Query 008219
Match_columns 573
No_of_seqs 472 out of 4674
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 21:00:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1707 Predicted Ras related/ 100.0 1.8E-93 3.8E-98 717.3 42.5 549 11-571 4-560 (625)
2 COG1160 Predicted GTPases [Gen 100.0 2E-40 4.3E-45 330.3 25.4 281 17-553 4-304 (444)
3 PRK03003 GTP-binding protein D 100.0 4.5E-36 9.7E-41 318.2 31.5 148 16-178 38-197 (472)
4 TIGR03594 GTPase_EngA ribosome 100.0 9.8E-34 2.1E-38 299.3 29.0 148 18-178 1-158 (429)
5 PRK00093 GTP-binding protein D 100.0 6.5E-33 1.4E-37 293.3 30.3 148 17-177 2-159 (435)
6 PRK09518 bifunctional cytidyla 100.0 8.8E-33 1.9E-37 306.2 31.1 150 14-178 273-434 (712)
7 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.7E-30 8E-35 226.8 14.4 142 426-572 7-150 (205)
8 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.2E-29 6.9E-34 220.8 14.7 165 13-181 6-173 (205)
9 KOG0092 GTPase Rab5/YPT51 and 100.0 4E-29 8.6E-34 219.4 14.8 165 14-183 3-170 (200)
10 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 6.1E-28 1.3E-32 211.5 15.2 166 12-182 18-187 (221)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.7E-27 3.7E-32 220.3 18.2 165 14-180 3-180 (182)
12 KOG0078 GTP-binding protein SE 100.0 2.1E-27 4.6E-32 212.9 16.7 165 12-181 8-175 (207)
13 cd04133 Rop_like Rop subfamily 100.0 3.1E-27 6.8E-32 217.1 18.0 164 17-182 2-175 (176)
14 KOG0080 GTPase Rab18, small G 100.0 1.2E-27 2.6E-32 202.0 13.3 165 13-182 8-176 (209)
15 KOG0394 Ras-related GTPase [Ge 99.9 1.3E-27 2.8E-32 207.3 12.8 168 13-183 6-181 (210)
16 cd01875 RhoG RhoG subfamily. 99.9 5E-27 1.1E-31 219.8 17.9 167 15-183 2-180 (191)
17 KOG0078 GTP-binding protein SE 99.9 2E-27 4.4E-32 213.1 14.4 145 424-573 8-153 (207)
18 KOG0098 GTPase Rab2, small G p 99.9 2.3E-27 5.1E-32 206.0 14.1 162 15-181 5-169 (216)
19 KOG0098 GTPase Rab2, small G p 99.9 2.6E-27 5.6E-32 205.8 14.3 143 426-573 4-147 (216)
20 cd04131 Rnd Rnd subfamily. Th 99.9 5.4E-27 1.2E-31 216.6 17.5 163 16-180 1-176 (178)
21 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.2E-26 2.5E-31 221.4 19.1 170 11-182 8-190 (232)
22 KOG0080 GTPase Rab18, small G 99.9 1.7E-27 3.7E-32 201.1 11.8 143 426-572 9-152 (209)
23 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 3.4E-27 7.5E-32 206.8 13.9 142 427-572 21-163 (221)
24 cd04121 Rab40 Rab40 subfamily. 99.9 1.3E-26 2.8E-31 215.5 18.4 162 15-181 5-168 (189)
25 KOG0079 GTP-binding protein H- 99.9 1.9E-27 4E-32 197.9 11.1 141 427-573 7-148 (198)
26 KOG0092 GTPase Rab5/YPT51 and 99.9 6.4E-27 1.4E-31 205.6 13.6 141 427-572 4-145 (200)
27 cd01874 Cdc42 Cdc42 subfamily. 99.9 2.3E-26 4.9E-31 212.2 17.7 162 16-179 1-174 (175)
28 cd04120 Rab12 Rab12 subfamily. 99.9 2.8E-26 6.1E-31 215.2 18.3 161 17-181 1-164 (202)
29 KOG0394 Ras-related GTPase [Ge 99.9 7E-27 1.5E-31 202.7 12.1 147 425-573 6-157 (210)
30 cd01893 Miro1 Miro1 subfamily. 99.9 6.6E-26 1.4E-30 207.6 18.8 165 17-181 1-165 (166)
31 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 6.7E-26 1.5E-30 215.1 19.0 168 16-185 1-181 (222)
32 KOG0079 GTP-binding protein H- 99.9 8.1E-27 1.8E-31 194.1 10.8 162 15-181 7-170 (198)
33 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1E-25 2.2E-30 207.3 18.2 161 16-181 2-165 (172)
34 cd01871 Rac1_like Rac1-like su 99.9 9.4E-26 2E-30 207.9 17.3 161 16-178 1-173 (174)
35 KOG0093 GTPase Rab3, small G p 99.9 4.4E-26 9.5E-31 189.6 12.7 143 426-573 19-162 (193)
36 KOG0087 GTPase Rab11/YPT3, sma 99.9 3.8E-26 8.3E-31 203.5 13.1 143 425-572 11-154 (222)
37 cd04134 Rho3 Rho3 subfamily. 99.9 1.6E-25 3.4E-30 209.5 17.4 166 17-184 1-178 (189)
38 cd04122 Rab14 Rab14 subfamily. 99.9 3.1E-25 6.8E-30 203.1 18.1 160 16-180 2-164 (166)
39 PLN03071 GTP-binding nuclear p 99.9 6.9E-25 1.5E-29 209.5 20.6 162 13-181 10-173 (219)
40 cd04136 Rap_like Rap-like subf 99.9 3.7E-25 8E-30 201.9 17.7 159 16-179 1-162 (163)
41 KOG0087 GTPase Rab11/YPT3, sma 99.9 1.3E-25 2.8E-30 200.1 13.3 164 12-180 10-176 (222)
42 cd04175 Rap1 Rap1 subgroup. T 99.9 7E-25 1.5E-29 200.4 18.1 159 16-179 1-162 (164)
43 smart00174 RHO Rho (Ras homolo 99.9 3.8E-25 8.2E-30 204.2 16.4 161 19-181 1-173 (174)
44 cd04103 Centaurin_gamma Centau 99.9 5.4E-25 1.2E-29 199.3 16.4 154 17-178 1-157 (158)
45 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.2E-24 2.5E-29 198.2 18.3 157 16-178 1-160 (162)
46 cd01867 Rab8_Rab10_Rab13_like 99.9 1.3E-24 2.7E-29 199.3 18.5 160 16-180 3-165 (167)
47 PTZ00369 Ras-like protein; Pro 99.9 1.3E-24 2.8E-29 203.4 18.3 162 15-181 4-168 (189)
48 cd01865 Rab3 Rab3 subfamily. 99.9 1.3E-24 2.7E-29 198.9 17.9 158 17-179 2-162 (165)
49 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.1E-24 2.3E-29 206.0 17.9 162 17-182 1-170 (201)
50 cd04140 ARHI_like ARHI subfami 99.9 1.3E-24 2.8E-29 198.8 17.9 156 17-177 2-162 (165)
51 cd04124 RabL2 RabL2 subfamily. 99.9 1.3E-24 2.8E-29 198.0 17.7 156 17-180 1-158 (161)
52 KOG0093 GTPase Rab3, small G p 99.9 4E-25 8.7E-30 183.9 12.7 161 16-181 21-184 (193)
53 cd04117 Rab15 Rab15 subfamily. 99.9 1.3E-24 2.8E-29 197.9 17.4 157 17-178 1-160 (161)
54 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.4E-24 3.1E-29 201.2 17.9 161 17-181 1-167 (182)
55 cd04126 Rab20 Rab20 subfamily. 99.9 1.8E-24 3.9E-29 205.2 18.8 160 17-180 1-190 (220)
56 cd04144 Ras2 Ras2 subfamily. 99.9 1.1E-24 2.3E-29 204.1 16.8 159 18-181 1-164 (190)
57 cd04176 Rap2 Rap2 subgroup. T 99.9 1.8E-24 3.8E-29 197.5 17.8 158 16-178 1-161 (163)
58 cd00877 Ran Ran (Ras-related n 99.9 1.4E-24 3.1E-29 198.5 17.1 158 17-181 1-160 (166)
59 cd01873 RhoBTB RhoBTB subfamil 99.9 2E-24 4.4E-29 201.9 17.8 158 16-178 2-194 (195)
60 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 2.5E-24 5.5E-29 197.1 18.0 159 16-179 2-163 (166)
61 cd04132 Rho4_like Rho4-like su 99.9 2.1E-24 4.6E-29 201.7 17.8 163 17-181 1-168 (187)
62 cd04145 M_R_Ras_like M-Ras/R-R 99.9 3E-24 6.5E-29 196.1 18.4 158 16-178 2-162 (164)
63 PF08356 EF_assoc_2: EF hand a 99.9 1.3E-25 2.8E-30 174.7 7.8 88 231-320 1-89 (89)
64 cd04127 Rab27A Rab27a subfamil 99.9 2.3E-24 4.9E-29 200.2 17.5 161 15-180 3-177 (180)
65 smart00173 RAS Ras subfamily o 99.9 3.7E-24 8.1E-29 195.5 18.0 158 17-179 1-161 (164)
66 cd04119 RJL RJL (RabJ-Like) su 99.9 3.4E-24 7.3E-29 196.4 17.8 159 17-180 1-167 (168)
67 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 3.2E-24 7E-29 196.9 17.4 159 18-179 2-164 (170)
68 cd04110 Rab35 Rab35 subfamily. 99.9 5E-24 1.1E-28 201.0 18.8 162 15-181 5-168 (199)
69 KOG0086 GTPase Rab4, small G p 99.9 5.8E-25 1.3E-29 184.0 10.8 142 425-571 6-148 (214)
70 cd04135 Tc10 TC10 subfamily. 99.9 3.7E-24 8E-29 197.6 16.9 161 17-179 1-173 (174)
71 cd04106 Rab23_lke Rab23-like s 99.9 4E-24 8.7E-29 194.9 16.9 156 17-177 1-160 (162)
72 cd04130 Wrch_1 Wrch-1 subfamil 99.9 3.6E-24 7.9E-29 197.5 16.5 159 17-177 1-171 (173)
73 cd04142 RRP22 RRP22 subfamily. 99.9 7.3E-24 1.6E-28 199.0 18.7 164 17-184 1-178 (198)
74 cd01864 Rab19 Rab19 subfamily. 99.9 5.5E-24 1.2E-28 194.6 17.4 160 15-178 2-164 (165)
75 cd04143 Rhes_like Rhes_like su 99.9 5.2E-24 1.1E-28 206.2 18.1 163 17-183 1-174 (247)
76 PF00071 Ras: Ras family; Int 99.9 4.1E-24 8.9E-29 194.8 16.1 158 18-180 1-161 (162)
77 cd01866 Rab2 Rab2 subfamily. 99.9 8.8E-24 1.9E-28 193.9 18.3 160 16-180 4-166 (168)
78 cd04109 Rab28 Rab28 subfamily. 99.9 6.8E-24 1.5E-28 202.5 17.7 160 17-181 1-167 (215)
79 cd01868 Rab11_like Rab11-like. 99.9 9.2E-24 2E-28 193.2 17.5 159 16-179 3-164 (165)
80 cd04116 Rab9 Rab9 subfamily. 99.9 7.7E-24 1.7E-28 194.7 17.1 159 15-178 4-169 (170)
81 cd04113 Rab4 Rab4 subfamily. 99.9 8.6E-24 1.9E-28 192.5 16.9 157 17-178 1-160 (161)
82 cd04112 Rab26 Rab26 subfamily. 99.9 1.1E-23 2.4E-28 197.4 18.0 161 17-182 1-165 (191)
83 cd01870 RhoA_like RhoA-like su 99.9 1.1E-23 2.3E-28 194.7 17.3 162 16-179 1-174 (175)
84 KOG0088 GTPase Rab21, small G 99.9 9.4E-25 2E-29 183.9 9.1 163 13-180 10-175 (218)
85 KOG0393 Ras-related small GTPa 99.9 1.1E-24 2.5E-29 196.7 10.3 168 15-184 3-183 (198)
86 smart00176 RAN Ran (Ras-relate 99.9 8.6E-24 1.9E-28 198.1 16.2 154 22-182 1-156 (200)
87 cd01892 Miro2 Miro2 subfamily. 99.9 1.3E-23 2.7E-28 192.9 16.7 163 14-181 2-167 (169)
88 cd04177 RSR1 RSR1 subgroup. R 99.9 2.3E-23 5.1E-28 191.1 18.3 161 16-180 1-164 (168)
89 cd04125 RabA_like RabA-like su 99.9 1.9E-23 4E-28 195.4 17.9 160 17-181 1-163 (188)
90 cd04121 Rab40 Rab40 subfamily. 99.9 1.3E-23 2.8E-28 195.3 16.5 140 427-572 5-145 (189)
91 KOG0095 GTPase Rab30, small G 99.9 5.4E-24 1.2E-28 177.5 12.0 140 426-570 5-145 (213)
92 cd04101 RabL4 RabL4 (Rab-like4 99.9 2.3E-23 5E-28 190.3 17.4 158 17-179 1-163 (164)
93 KOG0086 GTPase Rab4, small G p 99.9 6.9E-24 1.5E-28 177.6 12.6 161 16-181 9-172 (214)
94 cd04148 RGK RGK subfamily. Th 99.9 4.4E-23 9.5E-28 197.3 19.9 157 17-180 1-163 (221)
95 cd04149 Arf6 Arf6 subfamily. 99.9 1E-23 2.2E-28 193.2 14.8 158 14-177 7-167 (168)
96 PLN03118 Rab family protein; P 99.9 4.4E-23 9.5E-28 196.5 19.5 166 11-181 9-178 (211)
97 cd04118 Rab24 Rab24 subfamily. 99.9 3E-23 6.5E-28 194.9 18.1 161 17-181 1-167 (193)
98 cd04120 Rab12 Rab12 subfamily. 99.9 1.5E-23 3.2E-28 196.8 15.6 139 429-572 1-141 (202)
99 KOG0095 GTPase Rab30, small G 99.9 6E-24 1.3E-28 177.2 11.4 160 16-180 7-169 (213)
100 KOG0091 GTPase Rab39, small G 99.9 3E-24 6.6E-29 182.0 9.6 141 428-572 8-151 (213)
101 PLN03110 Rab GTPase; Provision 99.9 3.9E-23 8.4E-28 197.2 18.5 163 14-181 10-175 (216)
102 cd04111 Rab39 Rab39 subfamily. 99.9 3.9E-23 8.4E-28 196.3 18.4 160 16-180 2-166 (211)
103 cd04146 RERG_RasL11_like RERG/ 99.9 2E-23 4.4E-28 190.9 15.9 157 18-179 1-163 (165)
104 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.8E-23 4E-28 193.4 15.6 140 426-572 3-157 (182)
105 cd01860 Rab5_related Rab5-rela 99.9 6.5E-23 1.4E-27 187.1 17.7 159 16-179 1-162 (163)
106 cd00157 Rho Rho (Ras homology) 99.9 3.6E-23 7.7E-28 190.3 16.0 160 17-177 1-170 (171)
107 cd04115 Rab33B_Rab33A Rab33B/R 99.9 5.1E-23 1.1E-27 189.2 17.0 159 16-179 2-168 (170)
108 PLN00223 ADP-ribosylation fact 99.9 5.9E-23 1.3E-27 190.3 17.3 157 14-180 15-178 (181)
109 cd04131 Rnd Rnd subfamily. Th 99.9 3.6E-23 7.8E-28 191.0 15.5 137 429-572 2-153 (178)
110 cd04133 Rop_like Rop subfamily 99.9 3.1E-23 6.7E-28 190.6 14.9 137 429-572 2-151 (176)
111 smart00177 ARF ARF-like small 99.9 8E-23 1.7E-27 188.7 17.5 159 14-178 11-172 (175)
112 cd01863 Rab18 Rab18 subfamily. 99.9 9.3E-23 2E-27 185.7 17.6 156 17-178 1-160 (161)
113 cd04150 Arf1_5_like Arf1-Arf5- 99.9 7.5E-23 1.6E-27 185.8 16.9 155 17-177 1-158 (159)
114 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 5.1E-23 1.1E-27 196.3 16.5 139 427-572 12-165 (232)
115 cd01861 Rab6 Rab6 subfamily. 99.9 8.6E-23 1.9E-27 185.8 17.3 157 17-178 1-160 (161)
116 cd04129 Rho2 Rho2 subfamily. 99.9 8.6E-23 1.9E-27 190.7 17.6 164 16-181 1-174 (187)
117 smart00175 RAB Rab subfamily o 99.9 9.3E-23 2E-27 186.1 17.5 159 17-180 1-162 (164)
118 KOG0091 GTPase Rab39, small G 99.9 4.6E-23 1E-27 174.8 14.1 162 14-180 6-173 (213)
119 PLN03108 Rab family protein; P 99.9 1.3E-22 2.9E-27 192.7 19.0 161 15-180 5-168 (210)
120 cd04139 RalA_RalB RalA/RalB su 99.9 1.8E-22 4E-27 184.1 17.6 158 17-179 1-161 (164)
121 cd01862 Rab7 Rab7 subfamily. 99.9 1.7E-22 3.7E-27 186.0 17.5 161 17-181 1-168 (172)
122 cd04122 Rab14 Rab14 subfamily. 99.9 1.5E-22 3.2E-27 185.4 16.5 140 428-572 2-142 (166)
123 PTZ00133 ADP-ribosylation fact 99.9 1.8E-22 3.9E-27 187.4 17.0 161 14-180 15-178 (182)
124 KOG0088 GTPase Rab21, small G 99.9 1.4E-23 3.1E-28 176.8 8.1 141 427-572 12-153 (218)
125 cd04123 Rab21 Rab21 subfamily. 99.9 3.2E-22 6.9E-27 182.1 17.5 158 17-179 1-161 (162)
126 cd04158 ARD1 ARD1 subfamily. 99.9 2.2E-22 4.7E-27 184.8 16.2 155 18-180 1-161 (169)
127 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1.1E-22 2.3E-27 185.8 13.6 153 19-177 2-163 (164)
128 cd04147 Ras_dva Ras-dva subfam 99.9 3.8E-22 8.1E-27 188.1 17.6 160 18-180 1-163 (198)
129 KOG0395 Ras-related GTPase [Ge 99.9 1.9E-22 4.1E-27 187.3 15.3 162 15-181 2-166 (196)
130 cd01867 Rab8_Rab10_Rab13_like 99.9 3.2E-22 6.8E-27 183.4 16.5 141 427-572 2-143 (167)
131 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 2.4E-22 5.3E-27 184.8 15.5 140 428-572 2-142 (172)
132 cd01865 Rab3 Rab3 subfamily. 99.9 3.7E-22 8E-27 182.5 16.5 139 429-572 2-141 (165)
133 cd04154 Arl2 Arl2 subfamily. 99.9 4.7E-22 1E-26 183.3 16.6 158 12-177 10-172 (173)
134 cd01875 RhoG RhoG subfamily. 99.9 3.6E-22 7.9E-27 186.9 15.4 138 428-572 3-155 (191)
135 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 5.9E-22 1.3E-26 184.3 16.5 160 15-180 2-170 (183)
136 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 5.3E-22 1.2E-26 181.7 16.0 140 428-572 2-142 (166)
137 cd04117 Rab15 Rab15 subfamily. 99.9 4.9E-22 1.1E-26 180.9 15.4 139 429-572 1-140 (161)
138 cd04127 Rab27A Rab27a subfamil 99.9 8.7E-22 1.9E-26 182.8 17.1 142 427-572 3-155 (180)
139 cd04151 Arl1 Arl1 subfamily. 99.9 7.3E-22 1.6E-26 179.2 16.1 154 18-177 1-157 (158)
140 cd04157 Arl6 Arl6 subfamily. 99.9 3.8E-22 8.3E-27 181.7 14.2 154 18-177 1-161 (162)
141 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 7E-22 1.5E-26 182.3 15.7 157 15-177 14-173 (174)
142 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 8.9E-22 1.9E-26 180.7 16.1 139 430-572 2-143 (170)
143 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 6.8E-22 1.5E-26 186.8 15.7 142 429-572 1-146 (201)
144 cd04128 Spg1 Spg1p. Spg1p (se 99.9 6.8E-22 1.5E-26 183.3 15.3 138 429-572 1-144 (182)
145 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 8.7E-22 1.9E-26 187.0 16.4 137 429-572 2-153 (222)
146 cd01868 Rab11_like Rab11-like. 99.9 9.9E-22 2.1E-26 179.7 16.2 140 428-572 3-143 (165)
147 PTZ00132 GTP-binding nuclear p 99.9 4E-21 8.6E-26 183.6 20.7 165 11-182 4-170 (215)
148 cd04114 Rab30 Rab30 subfamily. 99.9 1.7E-21 3.8E-26 178.8 17.6 160 15-179 6-168 (169)
149 cd04136 Rap_like Rap-like subf 99.9 7E-22 1.5E-26 180.2 14.8 139 429-572 2-141 (163)
150 cd01892 Miro2 Miro2 subfamily. 99.9 9.3E-22 2E-26 180.5 15.6 139 425-570 1-141 (169)
151 cd00876 Ras Ras family. The R 99.9 1.6E-21 3.4E-26 177.1 16.3 156 18-178 1-159 (160)
152 PLN00023 GTP-binding protein; 99.9 1.7E-21 3.7E-26 190.3 17.3 144 425-570 18-190 (334)
153 cd04109 Rab28 Rab28 subfamily. 99.9 1.3E-21 2.7E-26 186.9 16.1 142 429-572 1-144 (215)
154 cd04119 RJL RJL (RabJ-Like) su 99.9 1.2E-21 2.6E-26 179.4 15.4 142 429-572 1-145 (168)
155 PLN03071 GTP-binding nuclear p 99.9 1.3E-21 2.7E-26 186.9 16.1 140 426-572 11-150 (219)
156 cd04110 Rab35 Rab35 subfamily. 99.9 1.7E-21 3.6E-26 183.7 16.5 140 427-572 5-145 (199)
157 cd04106 Rab23_lke Rab23-like s 99.9 1.5E-21 3.2E-26 177.9 15.5 138 429-572 1-141 (162)
158 cd01866 Rab2 Rab2 subfamily. 99.9 1.9E-21 4.1E-26 178.4 16.3 141 427-572 3-144 (168)
159 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2E-21 4.2E-26 178.7 16.3 141 428-572 2-144 (170)
160 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.3E-21 2.9E-26 180.4 15.1 137 429-572 2-153 (175)
161 cd04137 RheB Rheb (Ras Homolog 99.9 3E-21 6.5E-26 179.2 17.5 160 17-180 2-163 (180)
162 cd00154 Rab Rab family. Rab G 99.9 2E-21 4.3E-26 175.8 15.9 155 17-176 1-158 (159)
163 cd04111 Rab39 Rab39 subfamily. 99.9 2.1E-21 4.6E-26 184.4 16.5 141 428-572 2-144 (211)
164 cd04116 Rab9 Rab9 subfamily. 99.9 3.4E-21 7.5E-26 177.0 17.2 145 426-572 3-149 (170)
165 KOG0083 GTPase Rab26/Rab37, sm 99.9 4.4E-23 9.6E-28 168.7 3.9 135 433-572 2-138 (192)
166 cd04175 Rap1 Rap1 subgroup. T 99.9 1.7E-21 3.7E-26 178.0 14.7 139 429-572 2-141 (164)
167 KOG0097 GTPase Rab14, small G 99.9 1.4E-21 3.1E-26 161.5 12.5 162 15-181 10-174 (215)
168 cd01864 Rab19 Rab19 subfamily. 99.9 3.7E-21 8E-26 175.9 16.8 137 428-569 3-140 (165)
169 PLN03110 Rab GTPase; Provision 99.9 2.5E-21 5.4E-26 184.7 16.2 142 426-572 10-152 (216)
170 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.3E-21 2.8E-26 177.9 13.6 154 18-177 1-159 (160)
171 cd04138 H_N_K_Ras_like H-Ras/N 99.9 2.4E-21 5.3E-26 176.2 15.3 139 429-572 2-140 (162)
172 PF00071 Ras: Ras family; Int 99.9 1.5E-21 3.2E-26 178.0 13.8 138 430-572 1-139 (162)
173 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.5E-21 3.3E-26 178.7 13.9 156 18-177 1-166 (167)
174 cd04102 RabL3 RabL3 (Rab-like3 99.9 2.4E-21 5.2E-26 181.4 15.3 141 429-571 1-167 (202)
175 KOG0081 GTPase Rab27, small G 99.9 9.6E-23 2.1E-27 171.9 5.2 159 17-180 10-181 (219)
176 cd01871 Rac1_like Rac1-like su 99.9 3E-21 6.5E-26 177.9 15.6 137 429-572 2-153 (174)
177 KOG0081 GTPase Rab27, small G 99.9 6.2E-23 1.4E-27 173.0 3.9 143 427-573 8-160 (219)
178 smart00178 SAR Sar1p-like memb 99.9 2.5E-21 5.4E-26 180.2 15.2 159 14-178 15-183 (184)
179 PTZ00369 Ras-like protein; Pro 99.9 2.9E-21 6.3E-26 180.6 15.5 141 427-572 4-145 (189)
180 cd04125 RabA_like RabA-like su 99.9 3.5E-21 7.5E-26 180.1 16.0 139 429-572 1-140 (188)
181 cd00878 Arf_Arl Arf (ADP-ribos 99.9 5.8E-21 1.3E-25 173.2 16.5 153 18-177 1-157 (158)
182 cd04102 RabL3 RabL3 (Rab-like3 99.9 4.5E-21 9.7E-26 179.5 16.1 147 17-167 1-177 (202)
183 cd04176 Rap2 Rap2 subgroup. T 99.9 3E-21 6.5E-26 176.1 14.7 139 429-572 2-141 (163)
184 COG0486 ThdF Predicted GTPase 99.9 6.6E-21 1.4E-25 191.3 17.9 210 7-233 208-434 (454)
185 cd04113 Rab4 Rab4 subfamily. 99.9 4.6E-21 1E-25 174.5 15.1 139 429-572 1-140 (161)
186 cd04144 Ras2 Ras2 subfamily. 99.9 3.2E-21 7E-26 180.5 14.1 140 430-572 1-141 (190)
187 cd00879 Sar1 Sar1 subfamily. 99.9 5.6E-21 1.2E-25 179.0 15.7 157 14-178 17-189 (190)
188 KOG0097 GTPase Rab14, small G 99.9 2E-21 4.4E-26 160.5 10.9 142 426-572 9-151 (215)
189 cd00877 Ran Ran (Ras-related n 99.9 4.6E-21 1E-25 175.3 14.3 137 429-572 1-137 (166)
190 cd04124 RabL2 RabL2 subfamily. 99.9 6.8E-21 1.5E-25 173.4 15.3 136 429-572 1-136 (161)
191 cd04112 Rab26 Rab26 subfamily. 99.9 7E-21 1.5E-25 178.4 15.6 139 429-572 1-141 (191)
192 cd01863 Rab18 Rab18 subfamily. 99.9 9.3E-21 2E-25 172.4 16.0 140 429-572 1-140 (161)
193 cd04160 Arfrp1 Arfrp1 subfamil 99.9 4.9E-21 1.1E-25 175.4 14.1 153 18-177 1-166 (167)
194 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.8E-22 3.9E-27 165.2 3.9 156 20-180 1-160 (192)
195 cd01861 Rab6 Rab6 subfamily. 99.9 9.6E-21 2.1E-25 172.3 15.4 139 429-572 1-140 (161)
196 cd04132 Rho4_like Rho4-like su 99.9 9.3E-21 2E-25 177.0 15.4 137 429-572 1-145 (187)
197 cd04140 ARHI_like ARHI subfami 99.9 1.1E-20 2.4E-25 172.8 15.4 141 429-572 2-143 (165)
198 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.2E-20 2.5E-25 172.3 15.3 140 428-572 2-142 (164)
199 cd04134 Rho3 Rho3 subfamily. 99.9 1.1E-20 2.3E-25 176.8 15.0 136 430-572 2-152 (189)
200 PLN03108 Rab family protein; P 99.9 1.8E-20 3.9E-25 178.0 16.6 141 427-572 5-146 (210)
201 smart00173 RAS Ras subfamily o 99.8 1.1E-20 2.3E-25 172.6 14.3 139 429-572 1-140 (164)
202 smart00175 RAB Rab subfamily o 99.8 2E-20 4.3E-25 170.7 15.3 139 429-572 1-140 (164)
203 smart00176 RAN Ran (Ras-relate 99.8 1.5E-20 3.2E-25 176.2 14.3 132 434-572 1-132 (200)
204 cd04142 RRP22 RRP22 subfamily. 99.8 2.7E-20 5.8E-25 174.8 15.8 144 429-572 1-152 (198)
205 PRK15494 era GTPase Era; Provi 99.8 5.2E-20 1.1E-24 186.6 19.1 167 14-191 50-226 (339)
206 cd04101 RabL4 RabL4 (Rab-like4 99.8 3.4E-20 7.4E-25 169.3 15.9 138 429-572 1-142 (164)
207 TIGR00436 era GTP-binding prot 99.8 7.8E-20 1.7E-24 180.4 19.5 162 18-190 2-173 (270)
208 cd01897 NOG NOG1 is a nucleola 99.8 5E-20 1.1E-24 168.9 16.9 154 18-179 2-167 (168)
209 cd04118 Rab24 Rab24 subfamily. 99.8 2.9E-20 6.3E-25 174.6 15.6 138 429-572 1-144 (193)
210 cd01860 Rab5_related Rab5-rela 99.8 4.6E-20 1E-24 168.2 16.0 139 429-572 2-141 (163)
211 cd04159 Arl10_like Arl10-like 99.8 3.6E-20 7.9E-25 167.6 15.1 154 19-177 2-158 (159)
212 cd04126 Rab20 Rab20 subfamily. 99.8 2.8E-20 6E-25 176.6 14.7 130 429-568 1-150 (220)
213 cd01873 RhoBTB RhoBTB subfamil 99.8 4.5E-20 9.7E-25 172.6 15.6 137 428-572 2-174 (195)
214 smart00174 RHO Rho (Ras homolo 99.8 2.8E-20 6.1E-25 171.6 13.9 135 431-572 1-150 (174)
215 cd01890 LepA LepA subfamily. 99.8 8.6E-20 1.9E-24 169.2 16.6 154 18-179 2-176 (179)
216 KOG0395 Ras-related GTPase [Ge 99.8 2.6E-20 5.7E-25 173.0 12.9 140 428-572 3-143 (196)
217 COG1159 Era GTPase [General fu 99.8 2.2E-19 4.7E-24 170.5 18.9 176 13-197 3-188 (298)
218 cd04130 Wrch_1 Wrch-1 subfamil 99.8 6.2E-20 1.3E-24 169.2 14.9 137 429-572 1-152 (173)
219 KOG4252 GTP-binding protein [S 99.8 3.6E-21 7.8E-26 165.8 6.0 168 8-180 12-181 (246)
220 cd04155 Arl3 Arl3 subfamily. 99.8 7.9E-20 1.7E-24 168.4 15.5 154 14-177 12-172 (173)
221 cd04146 RERG_RasL11_like RERG/ 99.8 2.7E-20 5.8E-25 170.2 12.1 138 430-572 1-141 (165)
222 TIGR00450 mnmE_trmE_thdF tRNA 99.8 1.3E-19 2.7E-24 189.2 18.5 201 12-231 199-420 (442)
223 cd01898 Obg Obg subfamily. Th 99.8 1.1E-19 2.4E-24 166.9 15.9 155 18-178 2-169 (170)
224 PRK05291 trmE tRNA modificatio 99.8 1.2E-19 2.5E-24 190.7 18.0 201 13-232 212-428 (449)
225 cd04171 SelB SelB subfamily. 99.8 1.2E-19 2.6E-24 165.5 15.5 154 17-177 1-163 (164)
226 cd04103 Centaurin_gamma Centau 99.8 8.8E-20 1.9E-24 165.1 14.4 133 429-572 1-137 (158)
227 cd04177 RSR1 RSR1 subgroup. R 99.8 9.1E-20 2E-24 167.2 14.7 139 429-572 2-142 (168)
228 PF02421 FeoB_N: Ferrous iron 99.8 1.7E-20 3.7E-25 165.9 9.3 147 17-175 1-156 (156)
229 cd04123 Rab21 Rab21 subfamily. 99.8 1.6E-19 3.5E-24 164.2 16.0 139 429-572 1-140 (162)
230 cd04148 RGK RGK subfamily. Th 99.8 1.1E-19 2.3E-24 173.9 15.4 138 429-572 1-141 (221)
231 KOG4252 GTP-binding protein [S 99.8 2.8E-21 6E-26 166.5 3.8 141 427-573 19-160 (246)
232 PLN03118 Rab family protein; P 99.8 1.7E-19 3.6E-24 171.8 15.9 141 427-572 13-155 (211)
233 cd04143 Rhes_like Rhes_like su 99.8 1.2E-19 2.6E-24 175.7 14.9 141 429-572 1-149 (247)
234 PF00025 Arf: ADP-ribosylation 99.8 1.5E-19 3.2E-24 166.6 13.9 160 13-178 11-174 (175)
235 cd01862 Rab7 Rab7 subfamily. 99.8 2.9E-19 6.2E-24 164.4 15.9 142 429-572 1-145 (172)
236 TIGR02528 EutP ethanolamine ut 99.8 1.1E-19 2.4E-24 161.8 11.8 135 18-176 2-141 (142)
237 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.3E-19 7.2E-24 163.3 15.4 154 18-178 2-164 (168)
238 PLN00023 GTP-binding protein; 99.8 3.4E-19 7.4E-24 174.2 15.8 142 10-152 15-188 (334)
239 cd04135 Tc10 TC10 subfamily. 99.8 3.2E-19 7E-24 164.5 14.6 137 429-572 1-152 (174)
240 cd00154 Rab Rab family. Rab G 99.8 4.9E-19 1.1E-23 160.1 15.1 139 429-572 1-140 (159)
241 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 1.4E-19 2.9E-24 165.2 11.2 133 430-572 1-138 (164)
242 TIGR03156 GTP_HflX GTP-binding 99.8 5.3E-19 1.1E-23 179.4 16.1 152 15-178 188-350 (351)
243 PRK12299 obgE GTPase CgtA; Rev 99.8 9.9E-19 2.1E-23 175.9 17.5 158 17-180 159-328 (335)
244 cd04114 Rab30 Rab30 subfamily. 99.8 1E-18 2.2E-23 160.4 16.1 140 427-571 6-146 (169)
245 TIGR00231 small_GTP small GTP- 99.8 1.4E-18 3E-23 156.9 16.3 155 16-175 1-159 (161)
246 cd04139 RalA_RalB RalA/RalB su 99.8 1.1E-18 2.4E-23 159.0 15.2 139 429-572 1-140 (164)
247 cd01878 HflX HflX subfamily. 99.8 1.2E-18 2.6E-23 165.1 15.6 154 14-178 39-203 (204)
248 COG1100 GTPase SAR1 and relate 99.8 1.6E-18 3.4E-23 166.3 16.2 166 15-181 4-186 (219)
249 cd04149 Arf6 Arf6 subfamily. 99.8 1.1E-18 2.4E-23 159.8 14.3 128 427-564 8-135 (168)
250 cd00881 GTP_translation_factor 99.8 2E-18 4.4E-23 161.3 15.5 158 18-179 1-186 (189)
251 TIGR03598 GTPase_YsxC ribosome 99.8 1.8E-18 4E-23 160.2 14.6 157 5-169 7-179 (179)
252 PRK03003 GTP-binding protein D 99.8 2E-18 4.4E-23 183.4 16.8 158 15-180 210-382 (472)
253 cd01894 EngA1 EngA1 subfamily. 99.8 2.5E-18 5.4E-23 155.5 14.9 146 20-178 1-156 (157)
254 PRK00089 era GTPase Era; Revie 99.8 7.8E-18 1.7E-22 168.6 19.9 166 15-189 4-179 (292)
255 COG1160 Predicted GTPases [Gen 99.8 4E-18 8.6E-23 171.0 17.3 157 15-179 177-350 (444)
256 cd00876 Ras Ras family. The R 99.8 2.8E-18 6.1E-23 155.6 15.0 138 430-572 1-139 (160)
257 PRK12298 obgE GTPase CgtA; Rev 99.8 7.7E-18 1.7E-22 172.8 19.8 156 18-180 161-333 (390)
258 cd01870 RhoA_like RhoA-like su 99.8 3.9E-18 8.5E-23 157.4 15.9 134 429-569 2-149 (175)
259 cd01891 TypA_BipA TypA (tyrosi 99.8 3.4E-18 7.4E-23 160.6 15.7 149 18-171 4-173 (194)
260 TIGR02729 Obg_CgtA Obg family 99.8 4E-18 8.7E-23 171.4 17.1 155 17-178 158-327 (329)
261 cd01879 FeoB Ferrous iron tran 99.8 3E-18 6.6E-23 155.2 14.7 146 21-178 1-155 (158)
262 cd04137 RheB Rheb (Ras Homolog 99.8 3.2E-18 7E-23 158.8 14.8 139 429-572 2-141 (180)
263 smart00177 ARF ARF-like small 99.8 3.9E-18 8.4E-23 157.4 15.1 117 427-552 12-128 (175)
264 PLN00223 ADP-ribosylation fact 99.8 4E-18 8.8E-23 157.9 15.1 131 427-570 16-146 (181)
265 PTZ00132 GTP-binding nuclear p 99.8 4.7E-18 1E-22 162.4 15.9 140 426-572 7-146 (215)
266 PRK04213 GTP-binding protein; 99.8 2.4E-18 5.2E-23 162.7 13.6 153 14-179 7-191 (201)
267 cd04150 Arf1_5_like Arf1-Arf5- 99.8 3.8E-18 8.3E-23 154.8 14.4 115 429-552 1-115 (159)
268 cd01895 EngA2 EngA2 subfamily. 99.8 9.6E-18 2.1E-22 154.2 17.1 157 16-178 2-173 (174)
269 cd00157 Rho Rho (Ras homology) 99.8 3.6E-18 7.9E-23 156.9 14.1 137 429-572 1-151 (171)
270 KOG0393 Ras-related small GTPa 99.8 1E-18 2.2E-23 158.2 10.0 137 428-571 4-156 (198)
271 PTZ00133 ADP-ribosylation fact 99.8 6.1E-18 1.3E-22 156.9 15.3 117 427-552 16-132 (182)
272 cd04147 Ras_dva Ras-dva subfam 99.8 4.8E-18 1E-22 160.1 14.8 118 430-552 1-118 (198)
273 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 8.5E-18 1.8E-22 156.3 15.4 120 428-552 3-123 (183)
274 cd01889 SelB_euk SelB subfamil 99.8 7E-18 1.5E-22 158.2 14.8 162 17-182 1-188 (192)
275 PRK15467 ethanolamine utilizat 99.8 6E-18 1.3E-22 153.0 13.7 140 18-179 3-146 (158)
276 KOG0073 GTP-binding ADP-ribosy 99.8 1.4E-17 3E-22 142.3 14.9 162 14-180 14-178 (185)
277 cd04154 Arl2 Arl2 subfamily. 99.8 6.5E-18 1.4E-22 155.7 14.2 129 426-564 12-140 (173)
278 PF08477 Miro: Miro-like prote 99.8 2.7E-18 5.9E-23 147.7 10.5 113 18-130 1-119 (119)
279 cd01893 Miro1 Miro1 subfamily. 99.8 1.1E-17 2.3E-22 153.2 15.1 118 429-554 1-119 (166)
280 TIGR03594 GTPase_EngA ribosome 99.8 2E-17 4.4E-22 175.0 19.2 160 14-180 170-344 (429)
281 PRK00454 engB GTP-binding prot 99.8 1.5E-17 3.4E-22 156.5 16.4 165 7-179 15-193 (196)
282 cd04161 Arl2l1_Arl13_like Arl2 99.8 8.7E-18 1.9E-22 153.8 14.2 116 430-554 1-116 (167)
283 PF08477 Miro: Miro-like prote 99.8 5.8E-18 1.3E-22 145.7 12.1 114 430-549 1-119 (119)
284 PRK12297 obgE GTPase CgtA; Rev 99.8 2.8E-17 6.1E-22 169.3 19.3 153 18-180 160-327 (424)
285 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.6E-17 3.4E-22 150.1 15.4 145 16-178 1-155 (157)
286 cd04158 ARD1 ARD1 subfamily. 99.8 1.2E-17 2.6E-22 153.2 13.5 126 430-565 1-126 (169)
287 cd04163 Era Era subfamily. Er 99.7 2.8E-17 6.1E-22 149.9 15.7 156 15-178 2-167 (168)
288 PRK11058 GTPase HflX; Provisio 99.7 2.5E-17 5.5E-22 170.9 17.2 154 17-180 198-362 (426)
289 cd01881 Obg_like The Obg-like 99.7 1.4E-17 3.1E-22 153.7 13.4 151 21-177 1-174 (176)
290 PTZ00099 rab6; Provisional 99.7 2.8E-17 6.1E-22 151.1 15.1 138 39-181 3-143 (176)
291 cd04129 Rho2 Rho2 subfamily. 99.7 2.4E-17 5.1E-22 153.9 14.8 137 429-572 2-151 (187)
292 KOG0075 GTP-binding ADP-ribosy 99.7 4.9E-18 1.1E-22 141.9 8.1 155 15-178 19-180 (186)
293 cd04157 Arl6 Arl6 subfamily. 99.7 3.7E-17 8.1E-22 148.7 14.8 118 430-553 1-119 (162)
294 cd04170 EF-G_bact Elongation f 99.7 1.4E-17 3.1E-22 164.3 12.7 227 18-252 1-267 (268)
295 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 5.3E-17 1.1E-21 149.7 15.5 116 428-552 15-130 (174)
296 cd04156 ARLTS1 ARLTS1 subfamil 99.7 5E-17 1.1E-21 147.6 14.4 115 430-552 1-115 (160)
297 PF00009 GTP_EFTU: Elongation 99.7 7.1E-17 1.5E-21 150.7 15.1 159 15-179 2-186 (188)
298 cd04168 TetM_like Tet(M)-like 99.7 6.1E-17 1.3E-21 155.8 15.0 203 18-252 1-236 (237)
299 cd00882 Ras_like_GTPase Ras-li 99.7 6.9E-17 1.5E-21 144.3 14.4 153 21-176 1-156 (157)
300 PRK12296 obgE GTPase CgtA; Rev 99.7 8.1E-17 1.8E-21 167.8 16.6 157 17-180 160-340 (500)
301 KOG0070 GTP-binding ADP-ribosy 99.7 4E-17 8.7E-22 143.8 11.7 164 11-180 12-178 (181)
302 PRK00093 GTP-binding protein D 99.7 8.5E-17 1.8E-21 170.4 16.5 156 14-179 171-343 (435)
303 cd01886 EF-G Elongation factor 99.7 6.4E-17 1.4E-21 158.5 14.1 225 18-252 1-269 (270)
304 smart00178 SAR Sar1p-like memb 99.7 1.3E-16 2.9E-21 148.4 15.4 117 427-552 16-132 (184)
305 PRK09554 feoB ferrous iron tra 99.7 2.8E-16 6E-21 173.8 20.1 153 15-179 2-167 (772)
306 PRK09518 bifunctional cytidyla 99.7 1.2E-16 2.6E-21 177.8 16.8 158 15-180 449-621 (712)
307 cd04151 Arl1 Arl1 subfamily. 99.7 1.2E-16 2.7E-21 144.8 13.8 114 430-552 1-114 (158)
308 cd04105 SR_beta Signal recogni 99.7 2E-16 4.4E-21 149.1 15.5 117 18-134 2-124 (203)
309 KOG1423 Ras-like GTPase ERA [C 99.7 2.5E-16 5.4E-21 148.3 15.8 166 11-179 67-270 (379)
310 cd00878 Arf_Arl Arf (ADP-ribos 99.7 1.3E-16 2.8E-21 144.6 13.5 116 430-554 1-116 (158)
311 KOG0073 GTP-binding ADP-ribosy 99.7 1.3E-16 2.9E-21 136.3 12.4 118 426-552 14-131 (185)
312 TIGR00487 IF-2 translation ini 99.7 2.2E-16 4.7E-21 169.8 17.2 156 13-177 84-247 (587)
313 TIGR01393 lepA GTP-binding pro 99.7 2.7E-16 5.9E-21 170.0 17.9 158 18-183 5-183 (595)
314 KOG1191 Mitochondrial GTPase [ 99.7 1.8E-16 3.9E-21 158.8 14.9 220 12-234 264-512 (531)
315 CHL00189 infB translation init 99.7 2.6E-16 5.7E-21 171.3 16.4 158 13-178 241-408 (742)
316 cd01888 eIF2_gamma eIF2-gamma 99.7 4.5E-16 9.8E-21 147.0 16.0 160 17-181 1-200 (203)
317 cd04169 RF3 RF3 subfamily. Pe 99.7 1.8E-16 3.9E-21 155.2 13.4 221 18-252 4-266 (267)
318 cd00879 Sar1 Sar1 subfamily. 99.7 4.6E-16 9.9E-21 145.7 15.3 129 427-565 18-146 (190)
319 KOG3883 Ras family small GTPas 99.7 1.4E-15 3E-20 128.2 16.1 169 12-185 5-180 (198)
320 COG1100 GTPase SAR1 and relate 99.7 3.6E-16 7.7E-21 149.9 14.6 122 428-554 5-127 (219)
321 PRK05306 infB translation init 99.7 3.7E-16 8E-21 171.7 16.5 160 13-177 287-449 (787)
322 cd04160 Arfrp1 Arfrp1 subfamil 99.7 3.2E-16 7E-21 143.4 13.6 115 430-552 1-121 (167)
323 cd04159 Arl10_like Arl10-like 99.7 6.6E-16 1.4E-20 139.6 14.6 115 431-553 2-116 (159)
324 KOG0096 GTPase Ran/TC4/GSP1 (n 99.7 8.4E-17 1.8E-21 140.9 8.3 161 14-181 8-170 (216)
325 cd01896 DRG The developmentall 99.7 9.4E-16 2E-20 147.5 15.8 150 18-179 2-225 (233)
326 cd01898 Obg Obg subfamily. Th 99.7 3.1E-16 6.8E-21 143.9 12.0 140 430-571 2-148 (170)
327 TIGR00475 selB selenocysteine- 99.7 5.7E-16 1.2E-20 167.5 15.9 155 17-179 1-165 (581)
328 KOG1673 Ras GTPases [General f 99.7 1.7E-16 3.7E-21 133.9 8.8 164 15-181 19-187 (205)
329 TIGR00436 era GTP-binding prot 99.7 7.2E-16 1.6E-20 152.2 13.4 130 430-568 2-137 (270)
330 TIGR02528 EutP ethanolamine ut 99.7 2.2E-16 4.9E-21 140.3 8.9 116 430-572 2-123 (142)
331 cd04166 CysN_ATPS CysN_ATPS su 99.7 1E-15 2.3E-20 145.1 13.4 151 18-171 1-185 (208)
332 TIGR00491 aIF-2 translation in 99.7 1.2E-15 2.5E-20 163.8 15.4 157 17-177 5-213 (590)
333 cd00880 Era_like Era (E. coli 99.7 1.7E-15 3.6E-20 136.8 14.2 150 21-178 1-162 (163)
334 cd01876 YihA_EngB The YihA (En 99.7 1.9E-15 4.1E-20 138.1 14.2 156 18-178 1-169 (170)
335 PF00025 Arf: ADP-ribosylation 99.6 1.6E-15 3.4E-20 139.7 13.5 118 426-552 12-129 (175)
336 PF02421 FeoB_N: Ferrous iron 99.6 3.9E-16 8.5E-21 138.1 8.9 131 429-572 1-139 (156)
337 COG0218 Predicted GTPase [Gene 99.6 5.7E-15 1.2E-19 133.2 16.4 166 6-179 14-196 (200)
338 cd01884 EF_Tu EF-Tu subfamily. 99.6 3.4E-15 7.3E-20 139.3 15.4 150 16-169 2-172 (195)
339 COG1159 Era GTPase [General fu 99.6 8E-16 1.7E-20 146.4 11.2 119 429-555 7-131 (298)
340 COG0370 FeoB Fe2+ transport sy 99.6 1.4E-15 3E-20 159.6 13.9 156 15-182 2-166 (653)
341 TIGR00437 feoB ferrous iron tr 99.6 1.1E-15 2.3E-20 165.6 13.4 145 23-179 1-154 (591)
342 TIGR00450 mnmE_trmE_thdF tRNA 99.6 1.1E-15 2.3E-20 159.8 12.6 131 427-572 202-339 (442)
343 cd01890 LepA LepA subfamily. 99.6 2.3E-15 5.1E-20 139.4 13.2 131 430-570 2-150 (179)
344 PF08355 EF_assoc_1: EF hand a 99.6 2.7E-16 5.8E-21 119.6 5.5 70 354-423 1-75 (76)
345 PRK12317 elongation factor 1-a 99.6 2.4E-15 5.1E-20 158.3 14.7 159 13-172 3-197 (425)
346 cd04155 Arl3 Arl3 subfamily. 99.6 5.8E-15 1.2E-19 135.9 15.5 117 427-552 13-129 (173)
347 PRK05433 GTP-binding protein L 99.6 6.5E-15 1.4E-19 159.5 18.3 159 17-183 8-187 (600)
348 TIGR00157 ribosome small subun 99.6 4.3E-15 9.3E-20 143.7 14.9 93 74-174 24-117 (245)
349 cd01878 HflX HflX subfamily. 99.6 2.1E-15 4.5E-20 142.9 12.2 122 425-553 38-168 (204)
350 cd04171 SelB SelB subfamily. 99.6 3.8E-15 8.2E-20 135.6 13.2 112 430-553 2-119 (164)
351 cd04105 SR_beta Signal recogni 99.6 3.5E-15 7.6E-20 140.7 13.3 121 430-553 2-124 (203)
352 cd01891 TypA_BipA TypA (tyrosi 99.6 1.9E-15 4.2E-20 141.9 11.4 127 429-564 3-145 (194)
353 PRK12299 obgE GTPase CgtA; Rev 99.6 3.4E-15 7.4E-20 150.3 13.8 140 429-572 159-306 (335)
354 cd04167 Snu114p Snu114p subfam 99.6 4.6E-15 9.9E-20 141.3 13.9 111 18-132 2-136 (213)
355 KOG0070 GTP-binding ADP-ribosy 99.6 2.1E-15 4.6E-20 133.0 10.4 119 426-553 15-133 (181)
356 KOG0071 GTP-binding ADP-ribosy 99.6 5.5E-15 1.2E-19 122.7 11.7 160 14-178 15-176 (180)
357 TIGR03156 GTP_HflX GTP-binding 99.6 2.8E-15 6E-20 152.3 12.4 120 426-552 187-315 (351)
358 cd04104 p47_IIGP_like p47 (47- 99.6 1.2E-14 2.6E-19 136.6 15.8 159 16-180 1-184 (197)
359 cd01897 NOG NOG1 is a nucleola 99.6 4.8E-15 1E-19 135.7 12.7 133 430-572 2-146 (168)
360 KOG3883 Ras family small GTPas 99.6 8.5E-15 1.8E-19 123.5 12.5 141 427-572 8-153 (198)
361 TIGR02729 Obg_CgtA Obg family 99.6 5.8E-15 1.3E-19 148.6 13.7 143 428-572 157-307 (329)
362 cd04165 GTPBP1_like GTPBP1-lik 99.6 1.1E-14 2.5E-19 138.7 14.6 153 18-177 1-220 (224)
363 PRK10218 GTP-binding protein; 99.6 1.7E-14 3.6E-19 155.5 17.3 163 16-183 5-198 (607)
364 COG2229 Predicted GTPase [Gene 99.6 3.7E-14 8E-19 124.8 16.1 160 12-178 6-176 (187)
365 TIGR00231 small_GTP small GTP- 99.6 1.1E-14 2.3E-19 131.3 13.0 121 429-554 2-124 (161)
366 cd01858 NGP_1 NGP-1. Autoanti 99.6 3.7E-14 8E-19 128.3 16.1 89 82-177 4-92 (157)
367 TIGR01394 TypA_BipA GTP-bindin 99.6 1.7E-14 3.7E-19 155.7 16.0 161 18-183 3-194 (594)
368 KOG0076 GTP-binding ADP-ribosy 99.6 2E-15 4.4E-20 130.4 6.9 164 13-182 14-189 (197)
369 PRK15494 era GTPase Era; Provi 99.6 9.8E-15 2.1E-19 148.2 13.2 130 426-567 50-187 (339)
370 PTZ00099 rab6; Provisional 99.6 1.6E-14 3.4E-19 132.9 13.2 117 451-572 3-120 (176)
371 TIGR03680 eif2g_arch translati 99.6 2E-14 4.3E-19 149.9 15.5 165 14-180 2-196 (406)
372 PF10662 PduV-EutP: Ethanolami 99.6 1.7E-14 3.6E-19 124.6 12.3 136 18-176 3-142 (143)
373 cd01879 FeoB Ferrous iron tran 99.6 7.7E-15 1.7E-19 132.8 10.8 129 433-572 1-135 (158)
374 TIGR00483 EF-1_alpha translati 99.6 1.2E-14 2.6E-19 152.9 13.6 160 13-173 4-200 (426)
375 PRK10512 selenocysteinyl-tRNA- 99.6 4E-14 8.7E-19 153.6 16.7 155 17-178 1-164 (614)
376 PRK04004 translation initiatio 99.6 6.5E-14 1.4E-18 151.2 17.9 156 15-177 5-215 (586)
377 COG0486 ThdF Predicted GTPase 99.6 5.5E-15 1.2E-19 149.0 8.7 119 426-553 215-339 (454)
378 cd01885 EF2 EF2 (for archaea a 99.6 9.1E-14 2E-18 131.9 16.4 111 18-132 2-138 (222)
379 KOG0074 GTP-binding ADP-ribosy 99.6 1.9E-14 4.2E-19 119.7 10.2 132 426-569 15-146 (185)
380 PRK04000 translation initiatio 99.6 4.4E-14 9.4E-19 147.1 15.3 162 12-179 5-200 (411)
381 cd01883 EF1_alpha Eukaryotic e 99.6 1.5E-14 3.2E-19 138.3 10.9 150 18-169 1-194 (219)
382 KOG0075 GTP-binding ADP-ribosy 99.6 7.3E-15 1.6E-19 123.0 7.5 117 428-552 20-136 (186)
383 KOG0072 GTP-binding ADP-ribosy 99.6 1.9E-14 4.1E-19 120.2 9.9 158 13-179 15-178 (182)
384 COG2262 HflX GTPases [General 99.6 5.9E-14 1.3E-18 139.0 15.1 156 14-180 190-356 (411)
385 TIGR00484 EF-G translation elo 99.6 4.2E-14 9.2E-19 157.1 15.3 230 15-254 9-282 (689)
386 COG1163 DRG Predicted GTPase [ 99.6 7.5E-14 1.6E-18 133.3 14.7 154 14-179 61-288 (365)
387 KOG0071 GTP-binding ADP-ribosy 99.6 5.9E-14 1.3E-18 116.6 12.2 120 426-554 15-134 (180)
388 KOG1489 Predicted GTP-binding 99.5 5.3E-14 1.1E-18 133.7 13.0 152 18-177 198-364 (366)
389 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 3.6E-14 7.7E-19 129.8 11.6 114 430-552 2-116 (168)
390 cd00882 Ras_like_GTPase Ras-li 99.5 8E-14 1.7E-18 124.3 13.4 135 433-572 1-138 (157)
391 TIGR03598 GTPase_YsxC ribosome 99.5 7.4E-14 1.6E-18 129.3 13.1 131 425-567 15-161 (179)
392 COG3596 Predicted GTPase [Gene 99.5 8.5E-14 1.8E-18 130.5 13.3 166 11-180 34-222 (296)
393 PRK00007 elongation factor G; 99.5 5.6E-14 1.2E-18 155.9 14.3 232 15-254 9-283 (693)
394 PRK00089 era GTPase Era; Revie 99.5 6E-14 1.3E-18 140.5 13.2 130 429-568 6-144 (292)
395 KOG0074 GTP-binding ADP-ribosy 99.5 5.8E-14 1.3E-18 116.8 10.3 161 13-178 14-177 (185)
396 PRK12736 elongation factor Tu; 99.5 1.3E-13 2.8E-18 143.2 15.5 163 13-179 9-200 (394)
397 PRK12735 elongation factor Tu; 99.5 1.5E-13 3.3E-18 142.7 15.6 152 12-167 8-180 (396)
398 PRK04213 GTP-binding protein; 99.5 3.4E-14 7.5E-19 134.2 9.7 127 427-569 8-159 (201)
399 cd01855 YqeH YqeH. YqeH is an 99.5 1.8E-13 3.9E-18 128.0 14.4 93 76-177 24-122 (190)
400 COG1084 Predicted GTPase [Gene 99.5 2.7E-13 5.8E-18 130.2 15.5 157 14-180 166-336 (346)
401 PRK12297 obgE GTPase CgtA; Rev 99.5 1.3E-13 2.9E-18 142.2 14.2 138 429-571 159-304 (424)
402 PRK11058 GTPase HflX; Provisio 99.5 7.3E-14 1.6E-18 145.2 12.2 121 428-552 197-323 (426)
403 PRK12289 GTPase RsgA; Reviewed 99.5 2.5E-13 5.5E-18 137.1 15.7 87 79-174 82-169 (352)
404 PRK09866 hypothetical protein; 99.5 2.3E-12 5.1E-17 134.8 23.1 175 63-249 230-413 (741)
405 cd01859 MJ1464 MJ1464. This f 99.5 5.1E-13 1.1E-17 120.7 16.0 89 79-177 5-93 (156)
406 PRK13351 elongation factor G; 99.5 1.1E-13 2.5E-18 154.1 14.3 132 14-153 6-155 (687)
407 CHL00071 tufA elongation facto 99.5 3.3E-13 7.1E-18 140.9 16.5 153 12-168 8-181 (409)
408 PRK00741 prfC peptide chain re 99.5 8.6E-14 1.9E-18 148.3 12.0 131 15-153 9-161 (526)
409 KOG0096 GTPase Ran/TC4/GSP1 (n 99.5 3.4E-14 7.4E-19 124.7 7.2 121 427-553 9-129 (216)
410 KOG4423 GTP-binding protein-li 99.5 2.4E-15 5.1E-20 131.2 -0.1 166 15-183 24-197 (229)
411 KOG1673 Ras GTPases [General f 99.5 8.4E-14 1.8E-18 117.7 9.1 141 426-572 18-164 (205)
412 PRK05291 trmE tRNA modificatio 99.5 5E-14 1.1E-18 148.2 9.7 115 427-552 214-335 (449)
413 cd01899 Ygr210 Ygr210 subfamil 99.5 8.5E-13 1.8E-17 131.7 18.0 80 19-98 1-111 (318)
414 PF01926 MMR_HSR1: 50S ribosom 99.5 2.5E-13 5.4E-18 116.2 12.2 105 18-128 1-116 (116)
415 PRK12739 elongation factor G; 99.5 3.6E-13 7.9E-18 149.6 16.0 232 14-254 6-281 (691)
416 cd01895 EngA2 EngA2 subfamily. 99.5 3.2E-13 7E-18 123.9 13.1 116 428-553 2-128 (174)
417 cd01881 Obg_like The Obg-like 99.5 1.6E-13 3.4E-18 126.6 11.0 119 433-554 1-136 (176)
418 PRK12298 obgE GTPase CgtA; Rev 99.5 2.5E-13 5.5E-18 139.5 13.6 135 429-568 160-305 (390)
419 cd04163 Era Era subfamily. Er 99.5 3.2E-13 6.9E-18 122.9 12.7 131 428-567 3-141 (168)
420 PRK12296 obgE GTPase CgtA; Rev 99.5 3E-13 6.6E-18 141.2 13.5 143 428-572 159-318 (500)
421 PF09439 SRPRB: Signal recogni 99.5 1.7E-13 3.7E-18 124.0 10.1 116 17-134 4-127 (181)
422 TIGR00485 EF-Tu translation el 99.5 4.9E-13 1.1E-17 139.1 15.0 149 13-166 9-179 (394)
423 KOG4423 GTP-binding protein-li 99.5 9.7E-16 2.1E-20 133.6 -4.7 143 426-570 23-169 (229)
424 TIGR00503 prfC peptide chain r 99.5 7E-13 1.5E-17 141.4 15.3 131 14-152 9-161 (527)
425 TIGR02034 CysN sulfate adenyly 99.5 5.8E-13 1.3E-17 138.7 14.2 151 17-171 1-188 (406)
426 cd01857 HSR1_MMR1 HSR1/MMR1. 99.5 1.5E-12 3.2E-17 115.4 14.7 54 430-487 85-138 (141)
427 cd01894 EngA1 EngA1 subfamily. 99.5 1.7E-13 3.7E-18 123.7 8.7 114 432-554 1-121 (157)
428 cd00881 GTP_translation_factor 99.5 6.2E-13 1.3E-17 124.0 12.6 112 430-552 1-128 (189)
429 PRK05124 cysN sulfate adenylyl 99.5 5.3E-13 1.1E-17 141.2 13.5 156 13-172 24-217 (474)
430 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 1.7E-12 3.6E-17 122.1 15.1 160 17-181 1-185 (196)
431 PRK15467 ethanolamine utilizat 99.4 3.5E-13 7.5E-18 121.9 10.0 116 430-572 3-125 (158)
432 PRK00049 elongation factor Tu; 99.4 1.1E-12 2.3E-17 136.4 14.8 151 13-167 9-180 (396)
433 COG0536 Obg Predicted GTPase [ 99.4 1.3E-12 2.7E-17 126.1 14.1 158 19-180 162-333 (369)
434 cd01889 SelB_euk SelB subfamil 99.4 4.4E-13 9.6E-18 125.6 10.7 115 429-552 1-134 (192)
435 PRK12288 GTPase RsgA; Reviewed 99.4 1.8E-12 3.9E-17 131.0 15.8 86 84-175 118-203 (347)
436 KOG1191 Mitochondrial GTPase [ 99.4 2.1E-13 4.6E-18 137.0 8.4 125 428-553 268-404 (531)
437 TIGR03596 GTPase_YlqF ribosome 99.4 2.1E-12 4.5E-17 127.7 15.4 88 78-177 13-100 (276)
438 PRK00454 engB GTP-binding prot 99.4 1.2E-12 2.5E-17 123.2 12.8 117 425-553 21-150 (196)
439 PF05049 IIGP: Interferon-indu 99.4 1.7E-12 3.8E-17 130.1 14.6 160 14-179 33-217 (376)
440 PLN03127 Elongation factor Tu; 99.4 2.7E-12 5.9E-17 134.5 16.6 159 12-177 57-249 (447)
441 PRK05506 bifunctional sulfate 99.4 1.2E-12 2.6E-17 144.3 14.6 155 12-170 20-211 (632)
442 cd04164 trmE TrmE (MnmE, ThdF, 99.4 6.7E-13 1.5E-17 119.7 10.5 114 429-553 2-122 (157)
443 cd01849 YlqF_related_GTPase Yl 99.4 3.6E-12 7.8E-17 114.9 15.0 81 88-177 1-82 (155)
444 PLN03126 Elongation factor Tu; 99.4 2E-12 4.3E-17 136.1 15.1 153 12-168 77-250 (478)
445 PRK00098 GTPase RsgA; Reviewed 99.4 2.4E-12 5.3E-17 128.4 14.9 86 82-174 76-161 (298)
446 TIGR01393 lepA GTP-binding pro 99.4 2.2E-12 4.7E-17 139.9 14.8 133 428-570 3-153 (595)
447 cd01850 CDC_Septin CDC/Septin. 99.4 3.7E-12 8.1E-17 125.4 15.2 138 428-573 4-181 (276)
448 cd04166 CysN_ATPS CysN_ATPS su 99.4 1.2E-12 2.6E-17 124.2 11.0 131 430-570 1-167 (208)
449 TIGR00487 IF-2 translation ini 99.4 3.5E-12 7.6E-17 137.5 15.9 117 426-552 85-201 (587)
450 KOG0462 Elongation factor-type 99.4 2.5E-12 5.5E-17 130.4 13.6 162 17-186 61-241 (650)
451 cd01856 YlqF YlqF. Proteins o 99.4 6.3E-12 1.4E-16 115.3 15.2 88 78-177 11-98 (171)
452 PRK09563 rbgA GTPase YlqF; Rev 99.4 4.1E-12 8.9E-17 126.2 14.8 87 79-177 17-103 (287)
453 PRK09554 feoB ferrous iron tra 99.4 1.8E-12 3.9E-17 143.8 13.2 134 428-572 3-146 (772)
454 cd04168 TetM_like Tet(M)-like 99.4 1.8E-12 4E-17 124.8 11.5 115 430-553 1-131 (237)
455 PRK09602 translation-associate 99.4 1.3E-11 2.9E-16 127.0 18.3 81 17-97 2-113 (396)
456 cd04169 RF3 RF3 subfamily. Pe 99.4 4E-12 8.7E-17 124.6 13.5 131 430-570 4-154 (267)
457 KOG1423 Ras-like GTPase ERA [C 99.4 1.7E-12 3.8E-17 122.7 9.7 123 423-553 67-200 (379)
458 PLN00043 elongation factor 1-a 99.4 4.2E-12 9E-17 133.3 13.7 154 13-170 4-203 (447)
459 PF01926 MMR_HSR1: 50S ribosom 99.4 5.9E-12 1.3E-16 107.6 12.2 105 430-547 1-116 (116)
460 COG0218 Predicted GTPase [Gene 99.4 7.4E-12 1.6E-16 113.2 13.2 131 426-569 22-166 (200)
461 TIGR03597 GTPase_YqeH ribosome 99.4 5.8E-12 1.3E-16 128.9 13.9 96 73-176 50-149 (360)
462 PTZ00141 elongation factor 1- 99.4 7.6E-12 1.7E-16 131.4 14.6 155 13-170 4-203 (446)
463 cd01850 CDC_Septin CDC/Septin. 99.4 6.7E-12 1.5E-16 123.6 13.2 115 16-134 4-158 (276)
464 TIGR00491 aIF-2 translation in 99.4 2.8E-12 6E-17 137.9 11.1 111 430-552 6-135 (590)
465 TIGR00475 selB selenocysteine- 99.4 5.4E-12 1.2E-16 136.7 13.1 124 430-567 2-135 (581)
466 cd04167 Snu114p Snu114p subfam 99.4 4E-12 8.6E-17 121.1 10.6 113 430-551 2-136 (213)
467 cd01854 YjeQ_engC YjeQ/EngC. 99.3 1.5E-11 3.3E-16 122.0 15.0 83 82-173 74-157 (287)
468 COG0532 InfB Translation initi 99.3 5.8E-12 1.3E-16 129.1 11.9 158 16-177 5-167 (509)
469 PRK12740 elongation factor G; 99.3 5.3E-12 1.1E-16 140.6 12.4 225 22-254 1-265 (668)
470 TIGR00437 feoB ferrous iron tr 99.3 3.3E-12 7.2E-17 138.5 10.3 127 435-572 1-133 (591)
471 PTZ00327 eukaryotic translatio 99.3 1.7E-11 3.6E-16 128.3 15.1 162 13-180 31-233 (460)
472 cd01885 EF2 EF2 (for archaea a 99.3 1.1E-11 2.3E-16 117.8 12.1 113 430-551 2-138 (222)
473 cd01884 EF_Tu EF-Tu subfamily. 99.3 1.4E-11 3.1E-16 115.0 12.7 131 428-568 2-152 (195)
474 PRK12317 elongation factor 1-a 99.3 8.1E-12 1.8E-16 131.6 12.2 137 425-569 3-175 (425)
475 COG2229 Predicted GTPase [Gene 99.3 2.1E-11 4.5E-16 107.6 12.5 119 427-554 9-137 (187)
476 KOG0076 GTP-binding ADP-ribosy 99.3 2.4E-12 5.2E-17 111.6 6.4 120 427-552 16-140 (197)
477 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 1.6E-11 3.4E-16 116.5 12.5 162 18-180 1-176 (232)
478 KOG1145 Mitochondrial translat 99.3 2.3E-11 5E-16 123.4 14.1 154 14-178 151-314 (683)
479 CHL00189 infB translation init 99.3 1E-11 2.2E-16 135.7 12.0 118 426-552 242-361 (742)
480 KOG1707 Predicted Ras related/ 99.3 9.2E-12 2E-16 127.6 10.7 124 426-554 7-131 (625)
481 PF00009 GTP_EFTU: Elongation 99.3 7.4E-12 1.6E-16 116.8 9.1 117 427-553 2-137 (188)
482 KOG0090 Signal recognition par 99.3 2.6E-11 5.6E-16 109.2 11.3 115 17-134 39-160 (238)
483 cd00880 Era_like Era (E. coli 99.3 1.3E-11 2.8E-16 111.1 9.7 114 433-554 1-120 (163)
484 KOG0077 Vesicle coat complex C 99.3 2.1E-11 4.6E-16 104.9 10.1 156 14-175 18-188 (193)
485 KOG0077 Vesicle coat complex C 99.3 1.3E-11 2.9E-16 106.1 8.8 117 428-553 20-136 (193)
486 PRK05306 infB translation init 99.3 2E-11 4.3E-16 134.8 12.2 116 426-552 288-403 (787)
487 cd04104 p47_IIGP_like p47 (47- 99.3 1E-11 2.3E-16 116.6 8.7 112 429-552 2-121 (197)
488 KOG1490 GTP-binding protein CR 99.3 2.9E-11 6.2E-16 121.5 12.0 162 14-180 166-341 (620)
489 COG2262 HflX GTPases [General 99.3 2.8E-11 6.1E-16 120.2 11.6 123 424-553 188-319 (411)
490 COG0481 LepA Membrane GTPase L 99.3 2.5E-11 5.5E-16 121.2 11.3 159 18-184 11-190 (603)
491 PF09439 SRPRB: Signal recogni 99.3 7.2E-12 1.6E-16 113.5 6.4 121 430-554 5-128 (181)
492 cd04178 Nucleostemin_like Nucl 99.3 1.4E-10 3E-15 105.7 14.8 56 427-486 116-171 (172)
493 cd01882 BMS1 Bms1. Bms1 is an 99.3 1.3E-10 2.7E-15 111.4 15.1 144 13-168 36-184 (225)
494 COG1084 Predicted GTPase [Gene 99.3 8E-11 1.7E-15 113.4 13.5 121 425-552 165-294 (346)
495 cd04170 EF-G_bact Elongation f 99.3 4.3E-11 9.4E-16 118.2 12.3 129 430-570 1-147 (268)
496 PRK13796 GTPase YqeH; Provisio 99.3 8.1E-11 1.8E-15 120.7 14.5 87 82-176 64-155 (365)
497 cd01888 eIF2_gamma eIF2-gamma 99.3 5.2E-11 1.1E-15 112.5 12.1 118 429-553 1-152 (203)
498 CHL00071 tufA elongation facto 99.2 6.3E-11 1.4E-15 123.8 13.4 134 424-568 8-162 (409)
499 cd01886 EF-G Elongation factor 99.2 5.2E-11 1.1E-15 116.8 11.8 112 430-552 1-130 (270)
500 cd01896 DRG The developmentall 99.2 1E-10 2.3E-15 112.5 13.3 85 430-516 2-91 (233)
No 1
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=100.00 E-value=1.8e-93 Score=717.26 Aligned_cols=549 Identities=54% Similarity=0.873 Sum_probs=506.7
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 11 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
...++.+||++||+.||||||||-+|+...+++..|+..+...++.++....+...|+||+...+........++.||++
T Consensus 4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 45678999999999999999999999999999999999999999999999999999999998777667778899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCC
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (573)
++||+++++.+++.+..+|++.+++.+ .++||||||||+|+..... .+.+.....++..|.+++.+++|||++-.+
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~-~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN-NSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc-cchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 999999999999999999999999987 7999999999999987632 244556789999999999999999999999
Q ss_pred chhHHHHHHHHHhCCCCCCcchhhhhchhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHh
Q 008219 168 VPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQ 247 (573)
Q Consensus 168 i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~ 247 (573)
+.++|+.+.+++++|..|+|..+.+++++.+.+++.|+|.+||.++|+.|+++|++.+|++||+.++...+++.++.+++
T Consensus 163 ~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~ 242 (625)
T KOG1707|consen 163 VSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQ 242 (625)
T ss_pred hHhhhhhhhheeeccCccccccccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCccCCCcChhhHHHHHHHHHHcCCcchhhHHHhhhcCCCCcccccccC-CCCCCCCCCCCceecCHhHHHHHHHH
Q 008219 248 EKLREGVNERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELI-PYSAFKRAPDQSVELTNEAIDFLKGI 326 (573)
Q Consensus 248 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~-p~~~~~~~~~~~~~ls~~~~~~~~~~ 326 (573)
+.+|.||...|+|+.|||+|+.+|+++||+|++|++||+|||+|+|+|.++++ | .+++++++++|||+.|++||..+
T Consensus 243 e~~p~gv~~~~ltl~GFLfL~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p--~~~~~p~~s~ELs~~~~~Fl~~~ 320 (625)
T KOG1707|consen 243 EICPDGVYERGLTLPGFLFLNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPP--RLKVPPDQSVELSPKGYRFLVDV 320 (625)
T ss_pred hhcCchhhhccccccchHHHHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCc--cccCCCCcceeccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 6 99999999999999999999999
Q ss_pred HhhhCCCCCCCCChHhhhhhcccCCCCCCCCCCCCccccccCCCcccHHHHHhhchhhhccCHHHHHHHHHHhcCCCC--
Q 008219 327 FELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEWALMTLLDPARSVENLIYIGYPGD-- 404 (573)
Q Consensus 327 f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~i~l~~~~~~w~~~~~~~~~~~~~~l~y~g~~~~-- 404 (573)
|.+||+|+||.|+++|++.+|+++|+.||....++...+.+..|+++++||+++|++++++++..++++|.|+||+..
T Consensus 321 f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tlld~~~t~~~L~Ylgf~~~~~ 400 (625)
T KOG1707|consen 321 FEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWSLMTLLDPRRTLEYLAYLGFPTDAG 400 (625)
T ss_pred HHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHHHHhhccHHHHHHHHHhcCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred -cccceEEeccccchhhhcccCCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEe
Q 008219 405 -PSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLR 483 (573)
Q Consensus 405 -~~~a~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d 483 (573)
+.+++.++++|+.++++++.++++++|.|+|+.++|||.|+++|+|+.+...+..+...++.++.+... +..+++++-
T Consensus 401 ~~~~ai~vtRkr~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~-g~~k~LiL~ 479 (625)
T KOG1707|consen 401 SQASAIRVTRKRKLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK-GQQKYLILR 479 (625)
T ss_pred ccccceehhhhhhhhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec-cccceEEEe
Confidence 899999999999999999999999999999999999999999999999988767788889999999888 677777877
Q ss_pred cCChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccc-hhhHHH
Q 008219 484 EIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMA-IQDSTR 562 (573)
Q Consensus 484 t~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~ 562 (573)
.+|......+ .... ..||+++++||.+++.||+.+...+....... ..||++|++|+|+.+..+. .-+..+
T Consensus 480 ei~~~~~~~l-~~ke--~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~-----~~Pc~~va~K~dlDe~~Q~~~iqpde 551 (625)
T KOG1707|consen 480 EIGEDDQDFL-TSKE--AACDVACLVYDSSNPRSFEYLAEVYNKYFDLY-----KIPCLMVATKADLDEVPQRYSIQPDE 551 (625)
T ss_pred ecCccccccc-cCcc--ceeeeEEEecccCCchHHHHHHHHHHHhhhcc-----CCceEEEeeccccchhhhccCCChHH
Confidence 7776422222 2333 78999999999999999999988776654442 8999999999999876533 334488
Q ss_pred HHHHcCCcc
Q 008219 563 VFTFLVMVL 571 (573)
Q Consensus 563 ~~~~~~~~~ 571 (573)
+|++++++.
T Consensus 552 ~~~~~~i~~ 560 (625)
T KOG1707|consen 552 FCRQLGLPP 560 (625)
T ss_pred HHHhcCCCC
Confidence 999999864
No 2
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=2e-40 Score=330.25 Aligned_cols=281 Identities=18% Similarity=0.155 Sum_probs=215.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeecccccCCceeEEEEeCCCCccch---------hhhHhhhc
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADT--FPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDR---------GKLGEELR 85 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~ 85 (573)
..|+|+|+||||||||||||++.+ ++.+.||+... ++.....+.+..+.++||+|.+... .+...++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRD-r~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRD-RIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccC-CccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 579999999999999999999988 56678884322 2556666778889999999988433 13447799
Q ss_pred cCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCC
Q 008219 86 RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (573)
Q Consensus 86 ~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (573)
+||++|||+|.. ......+..+.+.|+.. ++|++||+||+|.... .....+.....++ .++.+||.||
T Consensus 83 eADvilfvVD~~--~Git~~D~~ia~~Lr~~--~kpviLvvNK~D~~~~-----e~~~~efyslG~g---~~~~ISA~Hg 150 (444)
T COG1160 83 EADVILFVVDGR--EGITPADEEIAKILRRS--KKPVILVVNKIDNLKA-----EELAYEFYSLGFG---EPVPISAEHG 150 (444)
T ss_pred hCCEEEEEEeCC--CCCCHHHHHHHHHHHhc--CCCEEEEEEcccCchh-----hhhHHHHHhcCCC---CceEeehhhc
Confidence 999999999955 44555555688888854 7999999999997743 1222233333333 7899999999
Q ss_pred CCchhHHHHHHHHHhCCCCCCcchhhhhchhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHH
Q 008219 166 IQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRV 245 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~ 245 (573)
.|+.+|++.++..+. +...
T Consensus 151 ~Gi~dLld~v~~~l~-~~e~------------------------------------------------------------ 169 (444)
T COG1160 151 RGIGDLLDAVLELLP-PDEE------------------------------------------------------------ 169 (444)
T ss_pred cCHHHHHHHHHhhcC-Cccc------------------------------------------------------------
Confidence 999999999887431 1000
Q ss_pred HhhhccCCccCCCcChhhHHHHHHHHHHcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHH
Q 008219 246 VQEKLREGVNERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKG 325 (573)
Q Consensus 246 i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~ 325 (573)
.+ .
T Consensus 170 ------------------------------------------------------~~-----~------------------ 172 (444)
T COG1160 170 ------------------------------------------------------EE-----E------------------ 172 (444)
T ss_pred ------------------------------------------------------cc-----c------------------
Confidence 00 0
Q ss_pred HHhhhCCCCCCCCChHhhhhhcccCCCCCCCCCCCCccccccCCCcccHHHHHhhchhhhccCHHHHHHHHHHhcCCCCc
Q 008219 326 IFELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEWALMTLLDPARSVENLIYIGYPGDP 405 (573)
Q Consensus 326 ~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~i~l~~~~~~w~~~~~~~~~~~~~~l~y~g~~~~~ 405 (573)
T Consensus 173 -------------------------------------------------------------------------------- 172 (444)
T COG1160 173 -------------------------------------------------------------------------------- 172 (444)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEeccccchhhhcccCCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecC
Q 008219 406 SSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREI 485 (573)
Q Consensus 406 ~~a~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~ 485 (573)
..+...+||+|||+||||||||+|+|+++++..++..++||++.+...... +..++.++||+
T Consensus 173 -----------------~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~-~~~~~~liDTA 234 (444)
T COG1160 173 -----------------EEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFER-DGRKYVLIDTA 234 (444)
T ss_pred -----------------cccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEE-CCeEEEEEECC
Confidence 000134899999999999999999999999999999999999998865554 67789999999
Q ss_pred ChhH---------HHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 486 PEEA---------VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 486 G~~~---------~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
|.++ +.+..++...+..||++++|+|++.+ +.+++..+..+.... +.++|||.||||+.+.
T Consensus 235 GiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~~-----g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 235 GIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEG--ISEQDLRIAGLIEEA-----GRGIVIVVNKWDLVEE 304 (444)
T ss_pred CCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCC--chHHHHHHHHHHHHc-----CCCeEEEEEccccCCc
Confidence 9433 22333466778999999999999988 777887777766655 8999999999998764
No 3
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=4.5e-36 Score=318.17 Aligned_cols=148 Identities=23% Similarity=0.171 Sum_probs=108.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCee--ecccccCCceeEEEEeCCCCccc--------hhhhHhh
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFP--ANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVED--------RGKLGEE 83 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~ 83 (573)
..+|+|+|++|||||||+|+|++.... ...++ .|+ ....+...+..+.+|||||++.. ......+
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~g---vT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPG---VTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCC---CCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 368999999999999999999987643 33444 332 33344556778999999998632 2234567
Q ss_pred hccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 84 ~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
++.||++|+|||+++..+.... .|...++.. ++|+++|+||+|+.... .+........++ .+++|||+
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~~--~i~~~l~~~--~~piilV~NK~Dl~~~~-----~~~~~~~~~g~~---~~~~iSA~ 182 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATDE--AVARVLRRS--GKPVILAANKVDDERGE-----ADAAALWSLGLG---EPHPVSAL 182 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCccc-----hhhHHHHhcCCC---CeEEEEcC
Confidence 8999999999999998776543 377777764 79999999999986531 111122222333 45799999
Q ss_pred CCCCchhHHHHHHHH
Q 008219 164 KQIQVPEVFYYAQKA 178 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~ 178 (573)
+|.|++++++.+.+.
T Consensus 183 ~g~gi~eL~~~i~~~ 197 (472)
T PRK03003 183 HGRGVGDLLDAVLAA 197 (472)
T ss_pred CCCCcHHHHHHHHhh
Confidence 999999999988764
No 4
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=9.8e-34 Score=299.35 Aligned_cols=148 Identities=19% Similarity=0.142 Sum_probs=106.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeecccccCCceeEEEEeCCCCcc--------chhhhHhhhccC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVE--------DRGKLGEELRRA 87 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~a 87 (573)
+|+|+|++|||||||+|+|++... +...+++.... ......+.+..+.+|||||... +......+++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~-~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDR-KYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCc-eEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 589999999999999999998763 34455532211 2334445677899999999743 223455678999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCC
Q 008219 88 DAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (573)
Q Consensus 88 d~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (573)
|++++|+|+++..+.... .+...+++. ++|+++|+||+|+.... ... .....++ ..+++++||++|.|
T Consensus 80 d~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~--~~~-----~~~~~lg-~~~~~~vSa~~g~g 147 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKED--AVA-----AEFYSLG-FGEPIPISAEHGRG 147 (429)
T ss_pred CEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCccc--ccH-----HHHHhcC-CCCeEEEeCCcCCC
Confidence 999999998876544443 366777665 79999999999987651 111 1123333 23789999999999
Q ss_pred chhHHHHHHHH
Q 008219 168 VPEVFYYAQKA 178 (573)
Q Consensus 168 i~~l~~~i~~~ 178 (573)
+.++++.+.+.
T Consensus 148 v~~ll~~i~~~ 158 (429)
T TIGR03594 148 IGDLLDAILEL 158 (429)
T ss_pred hHHHHHHHHHh
Confidence 99999987653
No 5
>PRK00093 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=6.5e-33 Score=293.28 Aligned_cols=148 Identities=19% Similarity=0.117 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeecccccCCceeEEEEeCCCCcc--------chhhhHhhhcc
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVE--------DRGKLGEELRR 86 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~ 86 (573)
.+|+|+|++|||||||+|+|++... +...+++.... ........+..+.+|||||+.. .......++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~-~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDR-IYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccc-eEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 5899999999999999999998773 44455532221 2233445568899999999876 12234467899
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCC
Q 008219 87 ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (573)
Q Consensus 87 ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (573)
+|++|+|+|++++.+.... .+...++.. ++|+++|+||+|+... ++..... ..++ ...++++||++|.
T Consensus 81 ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~------~~~~~~~-~~lg-~~~~~~iSa~~g~ 148 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDE------EADAYEF-YSLG-LGEPYPISAEHGR 148 (435)
T ss_pred CCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccc------hhhHHHH-HhcC-CCCCEEEEeeCCC
Confidence 9999999998876544332 245556555 7999999999996542 1111111 2333 2258999999999
Q ss_pred CchhHHHHHHH
Q 008219 167 QVPEVFYYAQK 177 (573)
Q Consensus 167 gi~~l~~~i~~ 177 (573)
|+.++++.+..
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999988765
No 6
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=100.00 E-value=8.8e-33 Score=306.19 Aligned_cols=150 Identities=20% Similarity=0.140 Sum_probs=107.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCee--ecccccCCceeEEEEeCCCCccc--------hhhhH
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVED--------RGKLG 81 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~ 81 (573)
....+|+|+|+||||||||+|+|++... +...++ .|+ ......+.+..+.+|||||++.. .....
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pG---vT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 349 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPG---VTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQ 349 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCC---eeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence 3456899999999999999999998764 333444 333 33344456788999999997642 23344
Q ss_pred hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEec
Q 008219 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (573)
Q Consensus 82 ~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (573)
.+++.+|++|+|+|+++. +...+..|...++.. ++|+++|+||+|+.... ..........++ ..++||
T Consensus 350 ~~~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~~-----~~~~~~~~lg~~---~~~~iS 417 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVG--LTSTDERIVRMLRRA--GKPVVLAVNKIDDQASE-----YDAAEFWKLGLG---EPYPIS 417 (712)
T ss_pred HHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHhc--CCCEEEEEECcccccch-----hhHHHHHHcCCC---CeEEEE
Confidence 678999999999998764 334444578888765 89999999999986531 111112222222 568999
Q ss_pred CCCCCCchhHHHHHHHH
Q 008219 162 ALKQIQVPEVFYYAQKA 178 (573)
Q Consensus 162 a~~~~gi~~l~~~i~~~ 178 (573)
|++|.||.++++.+.+.
T Consensus 418 A~~g~GI~eLl~~i~~~ 434 (712)
T PRK09518 418 AMHGRGVGDLLDEALDS 434 (712)
T ss_pred CCCCCCchHHHHHHHHh
Confidence 99999999999988764
No 7
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-30 Score=226.75 Aligned_cols=142 Identities=20% Similarity=0.353 Sum_probs=134.9
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+++|++|||||+|+.||.++.+.+.+..|++.++..+++.++|+..+++||||+|+++|+++ ...||++||+
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrti--t~syYR~ahG 84 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAHG 84 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhh--hHhhccCCCe
Confidence 46789999999999999999999999999999999999999999999988899999999999999999 9999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCc-cC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMV-LY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~ 572 (573)
||+|||+++.+||+.+..|+.++.++..+ ++|.++||||+|+.+.+ +..+++++|+.+++++ |+
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~---~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ 150 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDRYASE---NVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFL 150 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhhhccC---CCCeEEEeeccccHhheecCHHHHHHHHHhcCCccee
Confidence 99999999999999999999999998776 79999999999998877 6789999999999998 54
No 8
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.2e-29 Score=220.85 Aligned_cols=165 Identities=22% Similarity=0.355 Sum_probs=144.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
...-+||+|+|++|||||+|+.||..+.|...+..|.+... ..+.++++.++++||||+|+++|......++++||+|
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 34579999999999999999999999999999887777533 6778889999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
|+|||+|+.+||.++.. |+.+++++. .++|.+|||||+|+... +.++.+++ ..++..++. ..++|+||+++.|++
T Consensus 86 i~vyDiT~~~SF~~v~~-Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~-~~v~~~~a-~~fa~~~~~-~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 86 IFVYDITKQESFNNVKR-WIQEIDRYASENVPKLLVGNKCDLTEK-RVVSTEEA-QEFADELGI-PIFLETSAKDSTNVE 161 (205)
T ss_pred EEEEEcccHHHhhhHHH-HHHHhhhhccCCCCeEEEeeccccHhh-eecCHHHH-HHHHHhcCC-cceeecccCCccCHH
Confidence 99999999999999996 999999976 57899999999999987 66666655 566666663 239999999999999
Q ss_pred hHHHHHHHHHhC
Q 008219 170 EVFYYAQKAVLH 181 (573)
Q Consensus 170 ~l~~~i~~~~~~ 181 (573)
+.|..+...+..
T Consensus 162 ~~F~~la~~lk~ 173 (205)
T KOG0084|consen 162 DAFLTLAKELKQ 173 (205)
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
No 9
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4e-29 Score=219.40 Aligned_cols=165 Identities=22% Similarity=0.346 Sum_probs=141.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
...+||+++|+.+||||||+-|+..+.|.+...++.+.. +..+.+....+++.||||+|+++|.++.+.|+++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 357999999999999999999999999988755555542 255666677899999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
+|||+++.+||..++. |.++|++.. +++-+.|||||+|+... |++..++. ..++...+. .++|+|||+|.|+++
T Consensus 83 vvYDit~~~SF~~aK~-WvkeL~~~~~~~~vialvGNK~DL~~~-R~V~~~ea-~~yAe~~gl--l~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKN-WVKELQRQASPNIVIALVGNKADLLER-REVEFEEA-QAYAESQGL--LFFETSAKTGENVNE 157 (200)
T ss_pred EEEecccHHHHHHHHH-HHHHHHhhCCCCeEEEEecchhhhhhc-ccccHHHH-HHHHHhcCC--EEEEEecccccCHHH
Confidence 9999999999999996 999998865 56777889999999986 77777765 455555553 799999999999999
Q ss_pred HHHHHHHHHhCCC
Q 008219 171 VFYYAQKAVLHPT 183 (573)
Q Consensus 171 l~~~i~~~~~~~~ 183 (573)
+|..|.+.+....
T Consensus 158 if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 158 IFQAIAEKLPCSD 170 (200)
T ss_pred HHHHHHHhccCcc
Confidence 9999999875443
No 10
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.1e-28 Score=211.52 Aligned_cols=166 Identities=23% Similarity=0.304 Sum_probs=144.0
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
.+.+.+||+++|+.+|||||||+|++.+.|...|..|.+..- ..+.+.+..+++++|||+||++|..+++.|++++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 345569999999999999999999999999999888776544 445566778999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcC-C-CCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCC
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRLE-V-KVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~~-~-~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (573)
+|+|||+++..||++... |++.++... . ++-|+|||||.||.+. ++++.++.. ..+++++. .++++||+.|.|
T Consensus 98 aviVyDit~~~Sfe~t~k-Wi~dv~~e~gs~~viI~LVGnKtDL~dk-rqvs~eEg~-~kAkel~a--~f~etsak~g~N 172 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSK-WIEDVRRERGSDDVIIFLVGNKTDLSDK-RQVSIEEGE-RKAKELNA--EFIETSAKAGEN 172 (221)
T ss_pred EEEEEeccccchHHHHHH-HHHHHHhccCCCceEEEEEcccccccch-hhhhHHHHH-HHHHHhCc--EEEEecccCCCC
Confidence 999999999999999985 999998754 3 4778899999999998 888887764 67777775 799999999999
Q ss_pred chhHHHHHHHHHhCC
Q 008219 168 VPEVFYYAQKAVLHP 182 (573)
Q Consensus 168 i~~l~~~i~~~~~~~ 182 (573)
|.++|..+...+...
T Consensus 173 Vk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 173 VKQLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHHHHhccCc
Confidence 999999987765544
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.95 E-value=1.7e-27 Score=220.29 Aligned_cols=165 Identities=30% Similarity=0.459 Sum_probs=137.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
+..+||+++|++|||||||+++++.+.|...+.++.+. ......++...+.+.||||+|++.+......+++.+|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 45789999999999999999999999998876555443 33455666778899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------cccccHHHHHHHHHHHhcccCeEEEec
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE-----------NQQVSLEQVMMPIMQQFREIETCIECS 161 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (573)
|||++++.||+++...|.+.++...++.|++|||||+|+... .+.++.++ ...+++.++.. +++|||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~-~~~~a~~~~~~-~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQ-GANMAKQIGAA-TYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHH-HHHHHHHcCCC-EEEECC
Confidence 999999999999855699999888789999999999998642 12344444 46777777632 799999
Q ss_pred CCCCCC-chhHHHHHHHHHh
Q 008219 162 ALKQIQ-VPEVFYYAQKAVL 180 (573)
Q Consensus 162 a~~~~g-i~~l~~~i~~~~~ 180 (573)
|++|.| |+++|..+++.++
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 161 ALQSENSVRDIFHVATLACV 180 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 999998 9999999988643
No 12
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.1e-27 Score=212.94 Aligned_cols=165 Identities=20% Similarity=0.334 Sum_probs=146.0
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
.....+||+++|++|||||+|+.+|..+.|...+..+.+..- ..+..++..+.+++|||+|++++..+...|+++|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 445689999999999999999999999999888776555422 556667788999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCc
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRLEV-KVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (573)
+++|||+++..||+++.. |++.+.++.+ ++|.+|||||+|+... |.+..+.. +.++..++- +++|+||++|.||
T Consensus 88 i~LvyDitne~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~~-R~V~~e~g-e~lA~e~G~--~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEEK-RQVSKERG-EALAREYGI--KFFETSAKTNFNI 162 (207)
T ss_pred eEEEEEccchHHHHHHHH-HHHHHHhhCCCCCcEEEeecccccccc-ccccHHHH-HHHHHHhCC--eEEEccccCCCCH
Confidence 999999999999999996 9999998764 8999999999999986 77776655 788888874 8999999999999
Q ss_pred hhHHHHHHHHHhC
Q 008219 169 PEVFYYAQKAVLH 181 (573)
Q Consensus 169 ~~l~~~i~~~~~~ 181 (573)
.+.|..+.+.++.
T Consensus 163 ~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 163 EEAFLSLARDILQ 175 (207)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998765
No 13
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.95 E-value=3.1e-27 Score=217.15 Aligned_cols=164 Identities=27% Similarity=0.438 Sum_probs=135.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEe
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D 95 (573)
+||+++|++|||||||+.+++.+.|...+.++.+. ......+++..+.+.||||+|++++..+...+++.+|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 69999999999999999999999998776555543 33445556667899999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc---------ccccHHHHHHHHHHHhcccCeEEEecCCCCC
Q 008219 96 CDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN---------QQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (573)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (573)
++++.||+++...|++.++...++.|++|||||+|+.... +.+..+ ....++..++. .+++||||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~-~~~~~a~~~~~-~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTA-QGEELRKQIGA-AAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHH-HHHHHHHHcCC-CEEEECCCCccc
Confidence 9999999998546999998777789999999999996541 123433 34556666653 269999999999
Q ss_pred CchhHHHHHHHHHhCC
Q 008219 167 QVPEVFYYAQKAVLHP 182 (573)
Q Consensus 167 gi~~l~~~i~~~~~~~ 182 (573)
||+++|+.+++.++.|
T Consensus 160 nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 160 NVKAVFDAAIKVVLQP 175 (176)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999876543
No 14
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=201.98 Aligned_cols=165 Identities=26% Similarity=0.352 Sum_probs=143.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
....+||+++|++|||||||+-+|+.+.|.+..|.+.+..- +.+.+++..+++.||||+|+++|+.+.+.+++.|.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 34579999999999999999999999999998887665533 6677888899999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCc
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (573)
|+|||++.+++|..++ .|++++..++ +++-.++|+||+|...+ |.++.++.+ .++.++.. -++||||++..|+
T Consensus 88 IlVYDVT~Rdtf~kLd-~W~~Eld~Ystn~diikmlVgNKiDkes~-R~V~reEG~-kfAr~h~~--LFiE~SAkt~~~V 162 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLD-IWLKELDLYSTNPDIIKMLVGNKIDKESE-RVVDREEGL-KFARKHRC--LFIECSAKTRENV 162 (209)
T ss_pred EEEEEccchhhHHhHH-HHHHHHHhhcCCccHhHhhhcccccchhc-ccccHHHHH-HHHHhhCc--EEEEcchhhhccH
Confidence 9999999999999997 5999998876 56777899999998765 777777764 45566653 6999999999999
Q ss_pred hhHHHHHHHHHhCC
Q 008219 169 PEVFYYAQKAVLHP 182 (573)
Q Consensus 169 ~~l~~~i~~~~~~~ 182 (573)
...|++++.++...
T Consensus 163 ~~~FeelveKIi~t 176 (209)
T KOG0080|consen 163 QCCFEELVEKIIET 176 (209)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987643
No 15
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=207.33 Aligned_cols=168 Identities=22% Similarity=0.311 Sum_probs=142.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP--TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
.+.-+||+|+|++|||||||+|+++..+|...+..+++. -++.+.++..-+.++||||+|+++|.++.-.++++||++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 456799999999999999999999999988776655543 235666777788999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCc-ccccHHHHHHHHHHHhcccCeEEEecCCC
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE-----VKVPVIVVGCKLDLRDEN-QQVSLEQVMMPIMQQFREIETCIECSALK 164 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (573)
++|||++++.||+.+.. |.+++-... ...|+||+|||+|+.... +.++.. ....+++.-+++ ||||+|||.
T Consensus 86 vlvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~-~Aq~WC~s~gni-pyfEtSAK~ 162 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEK-KAQTWCKSKGNI-PYFETSAKE 162 (210)
T ss_pred EEEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHH-HHHHHHHhcCCc-eeEEecccc
Confidence 99999999999999996 998775432 368999999999998732 455544 457888888887 999999999
Q ss_pred CCCchhHHHHHHHHHhCCC
Q 008219 165 QIQVPEVFYYAQKAVLHPT 183 (573)
Q Consensus 165 ~~gi~~l~~~i~~~~~~~~ 183 (573)
+.||.+.|+.+.+.++...
T Consensus 163 ~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 163 ATNVDEAFEEIARRALANE 181 (210)
T ss_pred cccHHHHHHHHHHHHHhcc
Confidence 9999999999999877543
No 16
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.95 E-value=5e-27 Score=219.83 Aligned_cols=167 Identities=26% Similarity=0.422 Sum_probs=136.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
..+||+++|++|||||||+.+++.+.|...+.++.+. ......+++..+.+.||||+|++.+..+...+++.+|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 4689999999999999999999999987776555443 223345566678999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-----------cccHHHHHHHHHHHhcccCeEEEecC
Q 008219 94 YACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-----------QVSLEQVMMPIMQQFREIETCIECSA 162 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (573)
||++++.||+++...|.+.++...++.|++|||||+|+..... .+.. +....++..++. .++++|||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~-~~~~~~a~~~~~-~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITP-QQGGALAKQIHA-VKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCH-HHHHHHHHHcCC-cEEEEeCC
Confidence 9999999999997669988877667899999999999965411 1222 233455555553 27999999
Q ss_pred CCCCCchhHHHHHHHHHhCCC
Q 008219 163 LKQIQVPEVFYYAQKAVLHPT 183 (573)
Q Consensus 163 ~~~~gi~~l~~~i~~~~~~~~ 183 (573)
++|.||+++|+.+++.+..+.
T Consensus 160 k~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred CCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999887654
No 17
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2e-27 Score=213.07 Aligned_cols=145 Identities=15% Similarity=0.260 Sum_probs=136.8
Q ss_pred cCCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccc
Q 008219 424 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 503 (573)
Q Consensus 424 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~ 503 (573)
.....+||+++|++|||||+++.+|..+.+...+..|++.++.++++.+++...++++|||+|+++|..+ ...|+++|
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti--~~sYyrgA 85 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTI--TTAYYRGA 85 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHH--HHHHHhhc
Confidence 3567799999999999999999999999999999999999999999999988889999999999999999 89999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccCC
Q 008219 504 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLYK 573 (573)
Q Consensus 504 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~k 573 (573)
+++++|||+++..||+.+..|+..+.+..++ ++|.+|||||+|+..++ +..+.++++|+++|++|+.
T Consensus 86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~~---~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~E 153 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRNWIKNIDEHASD---DVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFE 153 (207)
T ss_pred CeeEEEEEccchHHHHHHHHHHHHHHhhCCC---CCcEEEeeccccccccccccHHHHHHHHHHhCCeEEE
Confidence 9999999999999999999999999998776 89999999999999877 7789999999999999873
No 18
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.3e-27 Score=206.03 Aligned_cols=162 Identities=22% Similarity=0.308 Sum_probs=144.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
..+|++++|+.|||||+|+.+++..+|.+.+..|.+.-. ..+.++.+.++++||||+|++.+.+....+++.|-++|+
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 568999999999999999999999999998877665433 566778889999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
|||+++++||..+.. |+..++... +|..++|+|||+|+... |.++.++. +.++.+.+- .++++||+++.|++|.
T Consensus 85 Vydit~r~sF~hL~~-wL~D~rq~~~~NmvImLiGNKsDL~~r-R~Vs~EEG-eaFA~ehgL--ifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 85 VYDITRRESFNHLTS-WLEDARQHSNENMVIMLIGNKSDLEAR-REVSKEEG-EAFAREHGL--IFMETSAKTAENVEEA 159 (216)
T ss_pred EEEccchhhHHHHHH-HHHHHHHhcCCCcEEEEEcchhhhhcc-ccccHHHH-HHHHHHcCc--eeehhhhhhhhhHHHH
Confidence 999999999999996 999999874 89999999999999988 77777766 667777764 6889999999999999
Q ss_pred HHHHHHHHhC
Q 008219 172 FYYAQKAVLH 181 (573)
Q Consensus 172 ~~~i~~~~~~ 181 (573)
|......++.
T Consensus 160 F~nta~~Iy~ 169 (216)
T KOG0098|consen 160 FINTAKEIYR 169 (216)
T ss_pred HHHHHHHHHH
Confidence 9988876643
No 19
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.6e-27 Score=205.78 Aligned_cols=143 Identities=16% Similarity=0.256 Sum_probs=134.6
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+|++++|+.|||||+|+.+|+...|...+..|.+.++-.+.+.+++...+++||||+|++.|.++ +..||+.|.+
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv--~~syYr~a~G 81 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSV--TRSYYRGAAG 81 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHH--HHHHhccCcc
Confidence 35689999999999999999999999999999999999999999999988899999999999999999 9999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccCC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLYK 573 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~k 573 (573)
++||||+++++||..+..|+.++.+...+ +..++|+|||+||...+ ++.++.+.||+++++.|++
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~---NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmE 147 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNE---NMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFME 147 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCC---CcEEEEEcchhhhhccccccHHHHHHHHHHcCceeeh
Confidence 99999999999999999999999988644 89999999999998877 8899999999999998763
No 20
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=5.4e-27 Score=216.56 Aligned_cols=163 Identities=31% Similarity=0.456 Sum_probs=134.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
++||+++|++|||||||+++++++.|...+.++.+. ......++...+.+.||||+|++.+......+++.+|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 479999999999999999999999988776555433 3344556677789999999999999888899999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------cccccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE-----------NQQVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
|++++.||+++...|.+.++..+++.|++|||||+|+... .+.++.++ ...+++.++. .+++||||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e-~~~~a~~~~~-~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQ-GCAIAKQLGA-EIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHH-HHHHHHHhCC-CEEEECccC
Confidence 9999999999755699999988889999999999998642 12344443 4567777763 279999999
Q ss_pred CCCC-chhHHHHHHHHHh
Q 008219 164 KQIQ-VPEVFYYAQKAVL 180 (573)
Q Consensus 164 ~~~g-i~~l~~~i~~~~~ 180 (573)
+|.| |+++|..+++..+
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999988543
No 21
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=1.2e-26 Score=221.35 Aligned_cols=170 Identities=24% Similarity=0.360 Sum_probs=139.7
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP-PTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 11 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
......+||+++|++|||||||+++|+.+.|...+.++.+ .....+.+....+.+.||||+|++.+......+++.||+
T Consensus 8 ~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 8 QPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred cCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 3445679999999999999999999999998877655443 333455666778899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------cccccHHHHHHHHHHHhcccCeEE
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE-----------NQQVSLEQVMMPIMQQFREIETCI 158 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 158 (573)
+|+|||++++.+|+++...|++.++...++.|++|||||+|+... .+.++.++ ...+++.++.. .|+
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e-~~~~a~~~~~~-~~~ 165 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQ-GCALAKQLGAE-VYL 165 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHH-HHHHHHHcCCC-EEE
Confidence 999999999999998644699999887778999999999998642 13355444 46777777632 699
Q ss_pred EecCCCCC-CchhHHHHHHHHHhCC
Q 008219 159 ECSALKQI-QVPEVFYYAQKAVLHP 182 (573)
Q Consensus 159 ~~Sa~~~~-gi~~l~~~i~~~~~~~ 182 (573)
+|||++|. ||+++|..+++.++..
T Consensus 166 EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 166 ECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred EccCCcCCcCHHHHHHHHHHHHHHh
Confidence 99999998 8999999999877543
No 22
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=201.06 Aligned_cols=143 Identities=18% Similarity=0.258 Sum_probs=133.6
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||++||.+|||||||+-+|..+.+....+.+++.++.++.+.++|...++-||||+|+|+|+.+ ++.||++|.+
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtL--TpSyyRgaqG 86 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTL--TPSYYRGAQG 86 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhcc--CHhHhccCce
Confidence 35689999999999999999999999999888888999999999999988899999999999999999 9999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+|+|||++.+++|..++.|+.++..+.... ++..++||||+|...++ +..++..+||+++++.|+
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~--diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFi 152 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNP--DIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFI 152 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCc--cHhHhhhcccccchhcccccHHHHHHHHHhhCcEEE
Confidence 999999999999999999999999987665 88889999999988766 678999999999998775
No 23
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.4e-27 Score=206.81 Aligned_cols=142 Identities=18% Similarity=0.284 Sum_probs=132.6
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
+.+|++++|+.+|||||||+||..+.+...|..|++.++..+++.+.+...++++|||+|+|+|+++ .+.|++++.++
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsl--ipsY~Rds~va 98 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--IPSYIRDSSVA 98 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhh--hhhhccCCeEE
Confidence 3489999999999999999999999999999999999999999999988899999999999999999 99999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|+|||+++..||+..+.|+.++....... ++-++|||||.||.+++ +..++++..|++++.-|+
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~--~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~ 163 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSD--DVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFI 163 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCC--ceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEE
Confidence 99999999999999999999999887664 68899999999999887 668899999999998654
No 24
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.95 E-value=1.3e-26 Score=215.45 Aligned_cols=162 Identities=20% Similarity=0.247 Sum_probs=135.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
..+||+++|++|||||||+.+|..+.+...+.++.+... ..+.++...+.+.+|||+|++.+..++..+++.+|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 469999999999999999999999888766554433211 334455667899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
|||++++.+|+++. .|++.+....++.|+||||||+|+... +.+..++ ...+++..+ .++++|||++|.||+++|
T Consensus 85 VfD~t~~~Sf~~~~-~w~~~i~~~~~~~piilVGNK~DL~~~-~~v~~~~-~~~~a~~~~--~~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 85 VYDITNRWSFDGID-RWIKEIDEHAPGVPKILVGNRLHLAFK-RQVATEQ-AQAYAERNG--MTFFEVSPLCNFNITESF 159 (189)
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccchhc-cCCCHHH-HHHHHHHcC--CEEEEecCCCCCCHHHHH
Confidence 99999999999997 499999887789999999999999765 4555544 456666665 289999999999999999
Q ss_pred HHHHHHHhC
Q 008219 173 YYAQKAVLH 181 (573)
Q Consensus 173 ~~i~~~~~~ 181 (573)
+++.+.+..
T Consensus 160 ~~l~~~i~~ 168 (189)
T cd04121 160 TELARIVLM 168 (189)
T ss_pred HHHHHHHHH
Confidence 999987753
No 25
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=1.9e-27 Score=197.91 Aligned_cols=141 Identities=21% Similarity=0.323 Sum_probs=133.1
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
+.+|.+|+|+||||||||+.+|..+.|+..|..|++.++.++++.++|...+++||||+|+|+|+.+ +..++++.+++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrti--tstyyrgthgv 84 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTI--TSTYYRGTHGV 84 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHH--HHHHccCCceE
Confidence 4468999999999999999999999999999999999999999999999999999999999999999 88999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccCC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLYK 573 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~k 573 (573)
|+|||+++.+||..+.+|+.++...++ .+|-|+||||.|+...+ +..++++.||..+|+.+|.
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd----sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FE 148 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNNCD----SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFE 148 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhcCc----cccceecccCCCCccceeeehHHHHHHHHhcCchhee
Confidence 999999999999999999999999887 79999999999998877 6689999999999998874
No 26
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.4e-27 Score=205.56 Aligned_cols=141 Identities=20% Similarity=0.286 Sum_probs=132.2
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+|++++|++|||||||+.||..++|.....+|++.-+..+++.+++...++.||||+|+|+|.++ .++||++|+++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sl--apMYyRgA~AA 81 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSL--APMYYRGANAA 81 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccc--ccceecCCcEE
Confidence 4589999999999999999999999999888899999999999999978889999999999999999 99999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|+|||+++.+||..++.|+.++.+..++ ++-+.|||||+||...+ +..++++.||++.++.||
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~~---~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ 145 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQASP---NIVIALVGNKADLLERREVEFEEAQAYAESQGLLFF 145 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCCC---CeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEE
Confidence 9999999999999999999999998764 78888999999998855 779999999999999887
No 27
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.94 E-value=2.3e-26 Score=212.21 Aligned_cols=162 Identities=22% Similarity=0.403 Sum_probs=130.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
.+||+++|++|||||||+++|+.+.|...+.++.+. ......+....+.+.||||+|++.+......+++.+|++|+||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 379999999999999999999999987776555433 3234445555688999999999999888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------ccccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
|++++.+++++...|...++...+++|++||+||+|+.... +.+..+ ....+++.++. ..+++|||+
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~-~~~~~a~~~~~-~~~~e~SA~ 158 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE-TGEKLARDLKA-VKYVECSAL 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHH-HHHHHHHHhCC-cEEEEecCC
Confidence 99999999999767999998777789999999999986531 223322 23445555543 279999999
Q ss_pred CCCCchhHHHHHHHHH
Q 008219 164 KQIQVPEVFYYAQKAV 179 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~~ 179 (573)
+|.|++++|+.+++++
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 28
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.94 E-value=2.8e-26 Score=215.21 Aligned_cols=161 Identities=23% Similarity=0.381 Sum_probs=132.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+.|+++|++|||||||++++..+.|...+.++.+... ..+.+.+..+.+.||||+|++.+..++..+++.+|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4699999999999999999999999887766554322 34555566789999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
|++++.||+.+.. |+..++... .+.|++|||||+|+... +++...+. ..+++..... .+++|||++|.||+++|+
T Consensus 81 Dvtd~~Sf~~l~~-w~~~i~~~~~~~~piilVgNK~DL~~~-~~v~~~~~-~~~a~~~~~~-~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPK-WMKMIDKYASEDAELLLVGNKLDCETD-REISRQQG-EKFAQQITGM-RFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccccc-cccCHHHH-HHHHHhcCCC-EEEEecCCCCCCHHHHHH
Confidence 9999999999985 999887654 57999999999999764 45554443 4455554222 799999999999999999
Q ss_pred HHHHHHhC
Q 008219 174 YAQKAVLH 181 (573)
Q Consensus 174 ~i~~~~~~ 181 (573)
++++.+..
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99987643
No 29
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.94 E-value=7e-27 Score=202.73 Aligned_cols=147 Identities=16% Similarity=0.256 Sum_probs=132.5
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
.+..+||+++|++|||||||+|++.+.+|...+..|++.++..+.+.+++....++||||+|+++|.++ .-.+|++||
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsL--g~aFYRgaD 83 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSL--GVAFYRGAD 83 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhc--ccceecCCc
Confidence 356799999999999999999999999999999999999999999999977789999999999999999 889999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCCCCcEEEEEeCCCCccc--c-cchhhHHHHHHHcC-CccCC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGE-DTGFEVPCLIVAAKDDLDSF--A-MAIQDSTRVFTFLV-MVLYK 573 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~--~-~~~~~~~~~~~~~~-~~~~k 573 (573)
++++|||++++.||+.++.|..++..+.. ..+...|+||+|||+|+... + ++...+++||++.| +|||.
T Consensus 84 cCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfE 157 (210)
T KOG0394|consen 84 CCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFE 157 (210)
T ss_pred eEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEE
Confidence 99999999999999999999998777644 33358999999999999762 3 77899999999987 88873
No 30
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=6.6e-26 Score=207.60 Aligned_cols=165 Identities=58% Similarity=0.982 Sum_probs=134.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeC
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~ 96 (573)
+||+++|++|||||||+++|.++.+...++++.+.++....+....+.+.+|||||.+.+...+..+++.+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999999987776665555555556667788999999999988777777888999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHHHH
Q 008219 97 DRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQ 176 (573)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 176 (573)
+++.+++.+...|.+.++....+.|+++|+||+|+.........++....+...+....++++|||++|.|++++|+.+.
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 160 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQ 160 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHH
Confidence 99999999876799988876678999999999999765211122333444555565444899999999999999999998
Q ss_pred HHHhC
Q 008219 177 KAVLH 181 (573)
Q Consensus 177 ~~~~~ 181 (573)
+.+++
T Consensus 161 ~~~~~ 165 (166)
T cd01893 161 KAVLH 165 (166)
T ss_pred HHhcC
Confidence 87664
No 31
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.94 E-value=6.7e-26 Score=215.10 Aligned_cols=168 Identities=27% Similarity=0.399 Sum_probs=137.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP-PTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
++||+|||++|||||||+++|+.+.|...+.++.. .+.....++...+.+.||||+|++.+....+.+++.+|++|+||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 37999999999999999999999998877655443 34445566677889999999999999998999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------ccccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
|++++++|+.+...|...++..+++.|++|||||+|+.... ..++.+ ....+++.++.. +|+||||+
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e-~g~~~ak~~~~~-~y~E~SAk 158 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHE-QGTVLAKQVGAV-SYVECSSR 158 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHH-HHHHHHHHcCCC-EEEEcCCC
Confidence 99999999999777998888877899999999999996531 012323 345666777643 89999999
Q ss_pred CCCC-chhHHHHHHHHHhCCCCC
Q 008219 164 KQIQ-VPEVFYYAQKAVLHPTGP 185 (573)
Q Consensus 164 ~~~g-i~~l~~~i~~~~~~~~~~ 185 (573)
++.| |+++|+.++++.+.+..+
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~~~ 181 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRGHR 181 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhccCC
Confidence 9985 999999999987665443
No 32
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=8.1e-27 Score=194.11 Aligned_cols=162 Identities=27% Similarity=0.359 Sum_probs=141.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
.-+|.+|+|++|||||||+.+|..+.|..+|..+.+..- ..+.+.+..++++||||+|++.|..+...+++..+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 457889999999999999999999999999877665533 566777888999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
|||+++.+||.+... |+++++..++.+|-+|||||+|.... +.+..++ ...++.+.+- .+||+||+.+.|++.+|
T Consensus 87 VYDVTn~ESF~Nv~r-WLeei~~ncdsv~~vLVGNK~d~~~R-rvV~t~d-Ar~~A~~mgi--e~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKR-WLEEIRNNCDSVPKVLVGNKNDDPER-RVVDTED-ARAFALQMGI--ELFETSAKENENVEAMF 161 (198)
T ss_pred EEECcchhhhHhHHH-HHHHHHhcCccccceecccCCCCccc-eeeehHH-HHHHHHhcCc--hheehhhhhcccchHHH
Confidence 999999999999995 99999999999999999999999885 4444444 4566666663 89999999999999999
Q ss_pred HHHHHHHhC
Q 008219 173 YYAQKAVLH 181 (573)
Q Consensus 173 ~~i~~~~~~ 181 (573)
.-|.+.++.
T Consensus 162 ~cit~qvl~ 170 (198)
T KOG0079|consen 162 HCITKQVLQ 170 (198)
T ss_pred HHHHHHHHH
Confidence 999887653
No 33
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.94 E-value=1e-25 Score=207.35 Aligned_cols=161 Identities=20% Similarity=0.352 Sum_probs=132.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
.+||+|+|++|||||||++++..+.+...+.++.+. ....+.+.+..+.+.||||||++.+..++..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 589999999999999999999999987766555443 3344555666788999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 95 ACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
|++++.+|+.+.. |...+... .+++|+++|+||+|+... +.++.++. ..+++.++ .++++|||++|.||+++|
T Consensus 82 d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~-~~v~~~~~-~~~a~~~~--~~~~e~Sa~~~~~v~~~f 156 (172)
T cd04141 82 SVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQ-RQVTTEEG-RNLAREFN--CPFFETSAALRHYIDDAF 156 (172)
T ss_pred ECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhc-CccCHHHH-HHHHHHhC--CEEEEEecCCCCCHHHHH
Confidence 9999999999985 87777653 357999999999998765 44554443 45556665 289999999999999999
Q ss_pred HHHHHHHhC
Q 008219 173 YYAQKAVLH 181 (573)
Q Consensus 173 ~~i~~~~~~ 181 (573)
+++++.+..
T Consensus 157 ~~l~~~~~~ 165 (172)
T cd04141 157 HGLVREIRR 165 (172)
T ss_pred HHHHHHHHH
Confidence 999987654
No 34
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.94 E-value=9.4e-26 Score=207.87 Aligned_cols=161 Identities=24% Similarity=0.424 Sum_probs=130.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
.+||+|+|++|||||||+.+++.+.|...+.++... ......+....+.+.||||+|++.+......+++.+|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 379999999999999999999999887775554433 2344455566788999999999999888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------ccccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
|++++.+|+++...|+..++...++.|++||+||+|+.... +.+..+ ....++..++.. ++++|||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~-~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYP-QGLAMAKEIGAV-KYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHH-HHHHHHHHcCCc-EEEEeccc
Confidence 99999999999767999887766789999999999996431 123323 334566666643 89999999
Q ss_pred CCCCchhHHHHHHHH
Q 008219 164 KQIQVPEVFYYAQKA 178 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~ 178 (573)
+|.|++++|+.+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999998763
No 35
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.4e-26 Score=189.62 Aligned_cols=143 Identities=15% Similarity=0.290 Sum_probs=133.3
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+|++|+|.+.||||||+.++++..+...+..|.+.++.++++.-.....++++|||+|+|+|+.+ +-.+++++++
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrti--TTayyRgamg 96 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTI--TTAYYRGAMG 96 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHH--HHHHhhccce
Confidence 35679999999999999999999999999999999999999999888767789999999999999999 8899999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccCC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLYK 573 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~k 573 (573)
+|||||+++.+||..+..|...+..+.-+ +.|+|+|+|||||.++| ++.+..+.+++++|+.||.
T Consensus 97 fiLmyDitNeeSf~svqdw~tqIktysw~---naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFE 162 (193)
T KOG0093|consen 97 FILMYDITNEESFNSVQDWITQIKTYSWD---NAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFE 162 (193)
T ss_pred EEEEEecCCHHHHHHHHHHHHHheeeecc---CceEEEEecccCCccceeeeHHHHHHHHHHhChHHhh
Confidence 99999999999999999999999998766 89999999999999988 5578999999999999874
No 36
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.8e-26 Score=203.46 Aligned_cols=143 Identities=19% Similarity=0.263 Sum_probs=134.8
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
....+||++||+++||||-|+.||..++|...+.+|++.++...++.+++...+.+||||+|+++|+.+ +..||++|.
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAi--tSaYYrgAv 88 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAI--TSAYYRGAV 88 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccc--cchhhcccc
Confidence 467799999999999999999999999999999999999999999999988889999999999999999 999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++.+.+|+.+.+|+.+++..... +++++|||||+||.+.+ +..++++.+|++.++.|+
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~---nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~ 154 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADS---NIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFL 154 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCC---CeEEEEeecchhhhhccccchhhhHhHHHhcCceEE
Confidence 999999999999999999999999988755 89999999999999876 779999999999888775
No 37
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=1.6e-25 Score=209.49 Aligned_cols=166 Identities=23% Similarity=0.341 Sum_probs=132.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEe
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D 95 (573)
.||+|+|++|||||||+++|.++.+...+.++.+. ......++...+.+.||||+|++.+......+++.+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 38999999999999999999999887765544332 22333445556889999999999988888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-----------cccHHHHHHHHHHHhcccCeEEEecCCC
Q 008219 96 CDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-----------QVSLEQVMMPIMQQFREIETCIECSALK 164 (573)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (573)
++++.+|+.+...|++.+....++.|++||+||+|+..... .+..++ ...++...+. .++++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~-~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEE-GLAVAKRINA-LRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHH-HHHHHHHcCC-CEEEEccCCc
Confidence 99999999987679999988777899999999999976421 122222 2344444443 3799999999
Q ss_pred CCCchhHHHHHHHHHhCCCC
Q 008219 165 QIQVPEVFYYAQKAVLHPTG 184 (573)
Q Consensus 165 ~~gi~~l~~~i~~~~~~~~~ 184 (573)
|.|++++|+++.+.++.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~~~~ 178 (189)
T cd04134 159 NRGVNEAFTEAARVALNVRP 178 (189)
T ss_pred CCCHHHHHHHHHHHHhcccc
Confidence 99999999999998876544
No 38
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.93 E-value=3.1e-25 Score=203.13 Aligned_cols=160 Identities=23% Similarity=0.364 Sum_probs=130.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
.+||+++|++|||||||+++|.++.+...++++.+... ....+....+.+.+|||||++.+......+++.+|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999999998887766544322 3345556678899999999999988889999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
||++++.+++.+.. |++.++... ++.|+++|+||+|+... +.+..++. ..+++..+ .++++|||++|.|++++|
T Consensus 82 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iiiv~nK~Dl~~~-~~~~~~~~-~~~~~~~~--~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 82 YDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLEAQ-RDVTYEEA-KQFADENG--LLFLECSAKTGENVEDAF 156 (166)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc-cCcCHHHH-HHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence 99999999999985 888876643 57899999999999765 44444443 45555554 289999999999999999
Q ss_pred HHHHHHHh
Q 008219 173 YYAQKAVL 180 (573)
Q Consensus 173 ~~i~~~~~ 180 (573)
..+.+.+.
T Consensus 157 ~~l~~~~~ 164 (166)
T cd04122 157 LETAKKIY 164 (166)
T ss_pred HHHHHHHh
Confidence 99987653
No 39
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.93 E-value=6.9e-25 Score=209.46 Aligned_cols=162 Identities=18% Similarity=0.294 Sum_probs=132.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
....+||+++|++|||||||+++++.+.+...+.++.+... .........+.+.+|||+|++.+...+..+++.+|++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 36789999999999999999999999988777666655433 2333445678999999999999998888999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
|+|||++++.+++.+.. |++.++...++.|++|||||+|+... .+..++ . .+....+ .++++|||++|.|+++
T Consensus 90 ilvfD~~~~~s~~~i~~-w~~~i~~~~~~~piilvgNK~Dl~~~--~v~~~~-~-~~~~~~~--~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 90 IIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR--QVKAKQ-V-TFHRKKN--LQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEEeCCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEEchhhhhc--cCCHHH-H-HHHHhcC--CEEEEcCCCCCCCHHH
Confidence 99999999999999985 99999887788999999999998643 232222 2 3333333 3799999999999999
Q ss_pred HHHHHHHHHhC
Q 008219 171 VFYYAQKAVLH 181 (573)
Q Consensus 171 l~~~i~~~~~~ 181 (573)
+|.++.+.+..
T Consensus 163 ~f~~l~~~~~~ 173 (219)
T PLN03071 163 PFLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHHc
Confidence 99999988754
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.93 E-value=3.7e-25 Score=201.90 Aligned_cols=159 Identities=26% Similarity=0.365 Sum_probs=128.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
.+||+++|++|||||||+++++.+.+...++++.+. ......+.+..+.+.||||||++.+...+..+++.+|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 379999999999999999999999887776554432 2344455566688999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 95 ACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
|++++.+++.+.. |...+... ..++|+++|+||+|+... +.+..++ ...+...++ .++++|||++|.|+.++|
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDE-RVVSREE-GQALARQWG--CPFYETSAKSKINVDEVF 155 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-ceecHHH-HHHHHHHcC--CeEEEecCCCCCCHHHHH
Confidence 9999999999885 88877653 357999999999998764 3333332 344555555 389999999999999999
Q ss_pred HHHHHHH
Q 008219 173 YYAQKAV 179 (573)
Q Consensus 173 ~~i~~~~ 179 (573)
+++++.+
T Consensus 156 ~~l~~~~ 162 (163)
T cd04136 156 ADLVRQI 162 (163)
T ss_pred HHHHHhc
Confidence 9998753
No 41
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-25 Score=200.11 Aligned_cols=164 Identities=23% Similarity=0.284 Sum_probs=141.0
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eecccccCCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
.-..-+||+++|++|||||-|+.|+..+.|..+...|.+.. +..+.++++.++.+||||+|+++|......+++.|.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 34567999999999999999999999999988866655542 2567788889999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCc
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (573)
+++|||++.+.+|+++.. |+.+|+.+. ++++++|||||+||... |.+..++. ..+++..+- .++++||..+.|+
T Consensus 90 AllVYDITr~~Tfenv~r-WL~ELRdhad~nivimLvGNK~DL~~l-raV~te~~-k~~Ae~~~l--~f~EtSAl~~tNV 164 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVER-WLKELRDHADSNIVIMLVGNKSDLNHL-RAVPTEDG-KAFAEKEGL--FFLETSALDATNV 164 (222)
T ss_pred eEEEEechhHHHHHHHHH-HHHHHHhcCCCCeEEEEeecchhhhhc-cccchhhh-HhHHHhcCc--eEEEecccccccH
Confidence 999999999999999985 999999976 79999999999999985 66666655 344444432 7999999999999
Q ss_pred hhHHHHHHHHHh
Q 008219 169 PEVFYYAQKAVL 180 (573)
Q Consensus 169 ~~l~~~i~~~~~ 180 (573)
++.|..++..++
T Consensus 165 e~aF~~~l~~I~ 176 (222)
T KOG0087|consen 165 EKAFERVLTEIY 176 (222)
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 42
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.93 E-value=7e-25 Score=200.38 Aligned_cols=159 Identities=27% Similarity=0.399 Sum_probs=128.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
++||+++|++|||||||+++++.+.+...++++.+.. .....+....+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 4799999999999999999999888877765554432 244555566788899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 95 ACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
|++++.+++.+.. |...+... ..+.|+++|+||+|+... +.....+ ...+++.++ .++++|||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDE-RVVGKEQ-GQNLARQWG--CAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhc-cEEcHHH-HHHHHHHhC--CEEEEeeCCCCCCHHHHH
Confidence 9999999999885 77776542 358999999999999764 3333332 345556665 389999999999999999
Q ss_pred HHHHHHH
Q 008219 173 YYAQKAV 179 (573)
Q Consensus 173 ~~i~~~~ 179 (573)
.++.+.+
T Consensus 156 ~~l~~~l 162 (164)
T cd04175 156 YDLVRQI 162 (164)
T ss_pred HHHHHHh
Confidence 9998754
No 43
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.93 E-value=3.8e-25 Score=204.22 Aligned_cols=161 Identities=26% Similarity=0.473 Sum_probs=129.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCC
Q 008219 19 IVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD 97 (573)
Q Consensus 19 I~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~ 97 (573)
|+|+|++|||||||+++++++.+...+.++... ......++...+.+.+|||||++.+......+++.+|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 689999999999999999999887765443322 2234445566678999999999999888889999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------ccccHHHHHHHHHHHhcccCeEEEecCCCCC
Q 008219 98 RPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (573)
Q Consensus 98 ~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (573)
++++|+.+...|++.+....+++|+++|+||+|+.... +.+..+ ....+++.++.. ++++|||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~-~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYE-QGEALAKRIGAV-KYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHH-HHHHHHHHcCCc-EEEEecCCCCC
Confidence 99999999767999998877899999999999987531 112222 334566666533 79999999999
Q ss_pred CchhHHHHHHHHHhC
Q 008219 167 QVPEVFYYAQKAVLH 181 (573)
Q Consensus 167 gi~~l~~~i~~~~~~ 181 (573)
|++++|+.+++.+++
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999987654
No 44
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.93 E-value=5.4e-25 Score=199.25 Aligned_cols=154 Identities=14% Similarity=0.213 Sum_probs=121.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeC
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~ 96 (573)
+||+++|++|||||||+.+++.+.|...++++.+.....+.+.+..+.+.+|||+|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 58999999999999999999998887776655444444455556668899999999864 3467889999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCC-cccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 97 DRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDE-NQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
+++.||+++.. |++.+.... ++.|+++|+||+|+... .+.+..++. ..+++..+. .++++|||++|.||+++|.
T Consensus 76 ~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~-~~~~~~~~~-~~~~e~SAk~~~~i~~~f~ 152 (158)
T cd04103 76 ENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARA-RQLCADMKR-CSYYETCATYGLNVERVFQ 152 (158)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHH-HHHHHHhCC-CcEEEEecCCCCCHHHHHH
Confidence 99999999985 988887654 57899999999998532 234444433 455555433 3899999999999999999
Q ss_pred HHHHH
Q 008219 174 YAQKA 178 (573)
Q Consensus 174 ~i~~~ 178 (573)
.+.+.
T Consensus 153 ~~~~~ 157 (158)
T cd04103 153 EAAQK 157 (158)
T ss_pred HHHhh
Confidence 98763
No 45
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.93 E-value=1.2e-24 Score=198.20 Aligned_cols=157 Identities=23% Similarity=0.374 Sum_probs=125.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
.+||+++|++|||||||+++|+++.+...+.++.+.. .....+....+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 4799999999999999999999998877766654433 234445555677999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 95 ACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
|++++.+++++.. |...+.+. ..++|+++|+||+|+... ..... ....+...++. +++++||++|.|++++|
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~--~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~ 154 (162)
T cd04138 81 AINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAAR--TVSSR-QGQDLAKSYGI--PYIETSAKTRQGVEEAF 154 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc--eecHH-HHHHHHHHhCC--eEEEecCCCCCCHHHHH
Confidence 9999999999875 77766553 247999999999998763 22222 23444455542 89999999999999999
Q ss_pred HHHHHH
Q 008219 173 YYAQKA 178 (573)
Q Consensus 173 ~~i~~~ 178 (573)
+++.+.
T Consensus 155 ~~l~~~ 160 (162)
T cd04138 155 YTLVRE 160 (162)
T ss_pred HHHHHH
Confidence 998864
No 46
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.93 E-value=1.3e-24 Score=199.31 Aligned_cols=160 Identities=21% Similarity=0.350 Sum_probs=131.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
.+||+++|++|||||||++++.+..+...+.++.+... ..+.+....+.+.+|||||++.+......+++.+|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 58999999999999999999999998877655554432 2344455568899999999998888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
||++++.++..+.. |+..+.... .+.|+++|+||+|+... +.+..++ ...+...++ .++++|||++|.|++++|
T Consensus 83 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~Dl~~~-~~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~~v~~~~ 157 (167)
T cd01867 83 YDITDEKSFENIRN-WMRNIEEHASEDVERMLVGNKCDMEEK-RVVSKEE-GEALADEYG--IKFLETSAKANINVEEAF 157 (167)
T ss_pred EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEECcccccc-cCCCHHH-HHHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence 99999999999985 999887753 57899999999999864 3344333 344555554 289999999999999999
Q ss_pred HHHHHHHh
Q 008219 173 YYAQKAVL 180 (573)
Q Consensus 173 ~~i~~~~~ 180 (573)
+++.+.++
T Consensus 158 ~~i~~~~~ 165 (167)
T cd01867 158 FTLAKDIK 165 (167)
T ss_pred HHHHHHHH
Confidence 99998764
No 47
>PTZ00369 Ras-like protein; Provisional
Probab=99.93 E-value=1.3e-24 Score=203.38 Aligned_cols=162 Identities=25% Similarity=0.390 Sum_probs=131.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
..+||+|+|++|||||||++++.++.+...+.++.+. ......++...+.+.||||||++++...+..+++.+|++++|
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 4699999999999999999999999887776554433 334455666678899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 94 YACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
||++++.+++.+.. |...+.... .+.|+++|+||+|+... +.+...+ ...+...++ .++++|||++|.|++++
T Consensus 84 ~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~-~~i~~~~-~~~~~~~~~--~~~~e~Sak~~~gi~~~ 158 (189)
T PTZ00369 84 YSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSE-RQVSTGE-GQELAKSFG--IPFLETSAKQRVNVDEA 158 (189)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-cccCHHH-HHHHHHHhC--CEEEEeeCCCCCCHHHH
Confidence 99999999999985 888776542 47899999999998654 3344333 234445554 28999999999999999
Q ss_pred HHHHHHHHhC
Q 008219 172 FYYAQKAVLH 181 (573)
Q Consensus 172 ~~~i~~~~~~ 181 (573)
|.++.+.+..
T Consensus 159 ~~~l~~~l~~ 168 (189)
T PTZ00369 159 FYELVREIRK 168 (189)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 48
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.93 E-value=1.3e-24 Score=198.89 Aligned_cols=158 Identities=24% Similarity=0.315 Sum_probs=127.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+||+++|++|||||||+++|.++.+...+.++.+... .........+.+.+|||||++.+......+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999998777655444322 22233345688999999999998888899999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
|++++.+++.+.. |++.++... .+.|+++|+||+|+... +....+ ....+...++. +++++||++|.|++++|+
T Consensus 82 d~~~~~s~~~~~~-~~~~i~~~~~~~~piivv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 82 DITNEESFNAVQD-WSTQIKTYSWDNAQVILVGNKCDMEDE-RVVSSE-RGRQLADQLGF--EFFEASAKENINVKQVFE 156 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCCEEEEEECcccCcc-cccCHH-HHHHHHHHcCC--EEEEEECCCCCCHHHHHH
Confidence 9999999999975 999987755 47899999999999765 333333 33445555543 799999999999999999
Q ss_pred HHHHHH
Q 008219 174 YAQKAV 179 (573)
Q Consensus 174 ~i~~~~ 179 (573)
.+.+.+
T Consensus 157 ~l~~~~ 162 (165)
T cd01865 157 RLVDII 162 (165)
T ss_pred HHHHHH
Confidence 998754
No 49
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=1.1e-24 Score=205.99 Aligned_cols=162 Identities=20% Similarity=0.282 Sum_probs=130.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eccccc-CCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFY-PDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
+||+|+|++|||||||+++|+++.+...+.++.+... ..+.+. ...+.+.+|||||++.+...+..+++.+|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 6899999999999999999999888777665544222 234444 5678899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-----CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCc
Q 008219 94 YACDRPETLDELSTFWLPELRRL-----EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~-----~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (573)
||++++.+|+.+.. |+..+... ..++|++||+||+|+... +.+..++ ...++...+. .++++|||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~-~~~~~~~~~~-~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLK-WKADLDSKVTLPNGEPIPCLLLANKCDLKKR-LAKDGEQ-MDQFCKENGF-IGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhcccCCCCCcEEEEEECCCcccc-cccCHHH-HHHHHHHcCC-ceEEEEeCCCCCCH
Confidence 99999999999974 88877642 257899999999999743 2344333 4556666552 38999999999999
Q ss_pred hhHHHHHHHHHhCC
Q 008219 169 PEVFYYAQKAVLHP 182 (573)
Q Consensus 169 ~~l~~~i~~~~~~~ 182 (573)
+++|+++.+.+...
T Consensus 157 ~e~f~~l~~~l~~~ 170 (201)
T cd04107 157 EEAMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999877543
No 50
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.93 E-value=1.3e-24 Score=198.80 Aligned_cols=156 Identities=24% Similarity=0.333 Sum_probs=124.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEe
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D 95 (573)
+||+++|++|||||||+++++++.+...+.++.+. +..........+.+.+|||||++.+......+++.+|++|+|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999887665444433 33444455667889999999999998888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 96 CDRPETLDELSTFWLPELRRLE----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
++++.+++.+.. |+..++... +++|+++|+||+|+... +.+...+. ......++ .++++|||++|.|++++
T Consensus 82 ~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~-~~v~~~~~-~~~~~~~~--~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 82 VTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHK-REVSSNEG-AACATEWN--CAFMETSAKTNHNVQEL 156 (165)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECcccccc-CeecHHHH-HHHHHHhC--CcEEEeecCCCCCHHHH
Confidence 999999999885 777776532 57999999999999764 33443332 33444444 37999999999999999
Q ss_pred HHHHHH
Q 008219 172 FYYAQK 177 (573)
Q Consensus 172 ~~~i~~ 177 (573)
|+++++
T Consensus 157 f~~l~~ 162 (165)
T cd04140 157 FQELLN 162 (165)
T ss_pred HHHHHh
Confidence 999875
No 51
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.93 E-value=1.3e-24 Score=197.97 Aligned_cols=156 Identities=24% Similarity=0.317 Sum_probs=125.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+||+++|++|||||||+++++.+.+.+.+.++..... ....+....+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999888766544332221 23344566788999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHH
Q 008219 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYY 174 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (573)
|++++.++..+.. |+..++...+++|+++|+||+|+... . .+....+....+ .+++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~p~ivv~nK~Dl~~~---~--~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSK-WYEELREYRPEIPCIVVANKIDLDPS---V--TQKKFNFAEKHN--LPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEECccCchh---H--HHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHH
Confidence 9999999999874 99999877678999999999998543 1 112223333333 38999999999999999999
Q ss_pred HHHHHh
Q 008219 175 AQKAVL 180 (573)
Q Consensus 175 i~~~~~ 180 (573)
+.+.++
T Consensus 153 l~~~~~ 158 (161)
T cd04124 153 AIKLAV 158 (161)
T ss_pred HHHHHH
Confidence 988654
No 52
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4e-25 Score=183.90 Aligned_cols=161 Identities=22% Similarity=0.307 Sum_probs=136.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
.+|+.|+|+..||||||+.+.++..|.+.+..+.+..- +.+--..+.++++||||+|++.+......++++|+++|+|
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 57999999999999999999999999887555444322 2222224568899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
||+++.+||..+.. |.-.++.++ .+.|+|+|+||||+..+ |.++.+. ...+..++|. .+||+|||.+.|++++|
T Consensus 101 yDitNeeSf~svqd-w~tqIktysw~naqvilvgnKCDmd~e-Rvis~e~-g~~l~~~LGf--efFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 101 YDITNEESFNSVQD-WITQIKTYSWDNAQVILVGNKCDMDSE-RVISHER-GRQLADQLGF--EFFETSAKENINVKQVF 175 (193)
T ss_pred EecCCHHHHHHHHH-HHHHheeeeccCceEEEEecccCCccc-eeeeHHH-HHHHHHHhCh--HHhhhcccccccHHHHH
Confidence 99999999999986 999998876 69999999999999987 6565554 4778888885 89999999999999999
Q ss_pred HHHHHHHhC
Q 008219 173 YYAQKAVLH 181 (573)
Q Consensus 173 ~~i~~~~~~ 181 (573)
+.++..+..
T Consensus 176 e~lv~~Ic~ 184 (193)
T KOG0093|consen 176 ERLVDIICD 184 (193)
T ss_pred HHHHHHHHH
Confidence 998876543
No 53
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.93 E-value=1.3e-24 Score=197.92 Aligned_cols=157 Identities=20% Similarity=0.298 Sum_probs=127.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+||+++|++|||||||+++++++.+...+.++.+... ....+....+.+.+|||+|++.+......+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999988776555444322 33444555678999999999999888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
|++++.+|+.+.. |++.+.... .+.|+++|+||+|+... +.+..++ ...+++.++ .++++|||++|.|++++|.
T Consensus 81 d~~~~~sf~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~-~~v~~~~-~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMK-WVSDVDEYAPEGVQKILIGNKADEEQK-RQVGDEQ-GNKLAKEYG--MDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc-cCCCHHH-HHHHHHHcC--CEEEEEeCCCCCCHHHHHH
Confidence 9999999999985 999887655 37999999999999765 4444433 345555555 3899999999999999999
Q ss_pred HHHHH
Q 008219 174 YAQKA 178 (573)
Q Consensus 174 ~i~~~ 178 (573)
++.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99764
No 54
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.93 E-value=1.4e-24 Score=201.23 Aligned_cols=161 Identities=21% Similarity=0.303 Sum_probs=127.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+||+++|++|||||||+++|+.+.|...+.++.+... ..+.+.+..+.+.||||+|++.+...+..+++.+|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999887666655322 34555566788999999999999988999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCc---ccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 95 ACDRPETLDELSTFWLPELRRLEV-KVPVIVVGCKLDLRDEN---QQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
|++++.+++++.. |+..++...+ ..| ++|+||+|+.... ......+....+++.++ .++++|||++|.|+++
T Consensus 81 D~t~~~s~~~i~~-~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~e~SAk~g~~v~~ 156 (182)
T cd04128 81 DLTRKSTLNSIKE-WYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK--APLIFCSTSHSINVQK 156 (182)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC--CEEEEEeCCCCCCHHH
Confidence 9999999999975 9998877543 455 6899999996321 11111233345555555 3899999999999999
Q ss_pred HHHHHHHHHhC
Q 008219 171 VFYYAQKAVLH 181 (573)
Q Consensus 171 l~~~i~~~~~~ 181 (573)
+|+++.+.+..
T Consensus 157 lf~~l~~~l~~ 167 (182)
T cd04128 157 IFKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 55
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.93 E-value=1.8e-24 Score=205.20 Aligned_cols=160 Identities=29% Similarity=0.348 Sum_probs=124.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeC
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~ 96 (573)
+||+|+|++|||||||+++|+.+.|....++ .+.... ......+.+.||||+|++.+......+++.+|++|+|||+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~T-ig~~~~--~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv 77 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVST-VGGAFY--LKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV 77 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCc-cceEEE--EEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC
Confidence 5899999999999999999999988654333 222111 1123567899999999999999899999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------------cccccHHHHHHHHHHHhccc----
Q 008219 97 DRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE------------------NQQVSLEQVMMPIMQQFREI---- 154 (573)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~------------------~~~~~~~~~~~~~~~~~~~~---- 154 (573)
+++++|+++...|....+...++.|+|||+||+|+... .+.+..++. ..+++.++..
T Consensus 78 t~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~-~~~a~~~~~~~~~~ 156 (220)
T cd04126 78 SNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA-KAFYKRINKYKMLD 156 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH-HHHHHHhCcccccc
Confidence 99999999986444444333457999999999999751 244555544 5566665521
Q ss_pred --------CeEEEecCCCCCCchhHHHHHHHHHh
Q 008219 155 --------ETCIECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 155 --------~~~~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
.+|+||||++|.||+++|..+++.++
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 37999999999999999999998764
No 56
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=1.1e-24 Score=204.08 Aligned_cols=159 Identities=23% Similarity=0.390 Sum_probs=128.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~ 96 (573)
||+|+|++|||||||+++|+.+.+...++++.+.. .....+.+..+.+.||||||++.+......+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999988877766654432 23344555567899999999999999899999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 97 DRPETLDELSTFWLPELRRL----EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~----~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
+++.+++.+.. |+..+... ..+.|+++|+||+|+... +.+...+. ..+...++. +++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~-~~v~~~~~-~~~~~~~~~--~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYE-REVSTEEG-AALARRLGC--EFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhcccc-CccCHHHH-HHHHHHhCC--EEEEecCCCCCCHHHHH
Confidence 99999999885 88877653 247899999999999764 34444433 445555552 79999999999999999
Q ss_pred HHHHHHHhC
Q 008219 173 YYAQKAVLH 181 (573)
Q Consensus 173 ~~i~~~~~~ 181 (573)
+++.+.+..
T Consensus 156 ~~l~~~l~~ 164 (190)
T cd04144 156 YTLVRALRQ 164 (190)
T ss_pred HHHHHHHHH
Confidence 999987653
No 57
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.92 E-value=1.8e-24 Score=197.48 Aligned_cols=158 Identities=23% Similarity=0.350 Sum_probs=127.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
++||+++|++|||||||+++++.+.+...+.++... ......+.+..+.+.||||||++.+...+..+++.+|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 479999999999999999999999887776554432 2234455555678999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 95 ACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
|++++.+++++.. |...+.... .++|+++|+||+|+... +.+...+ ...+...++ .++++|||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~-~~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 81 SLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESE-REVSSAE-GRALAEEWG--CPFMETSAKSKTMVNELF 155 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhc-CccCHHH-HHHHHHHhC--CEEEEecCCCCCCHHHHH
Confidence 9999999999985 887776542 58999999999998654 3333333 344555554 289999999999999999
Q ss_pred HHHHHH
Q 008219 173 YYAQKA 178 (573)
Q Consensus 173 ~~i~~~ 178 (573)
.++.+.
T Consensus 156 ~~l~~~ 161 (163)
T cd04176 156 AEIVRQ 161 (163)
T ss_pred HHHHHh
Confidence 998764
No 58
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.92 E-value=1.4e-24 Score=198.54 Aligned_cols=158 Identities=17% Similarity=0.303 Sum_probs=126.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+||+++|++|||||||+++++.+.+...+.++.+... .........+.+.+|||+|++.+......++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999998887766555544332 22333456788999999999988888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHH
Q 008219 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYY 174 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (573)
|++++.+++.+.. |+..++....++|+++|+||+|+... .+.. +. ..+.... ..+++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~piiiv~nK~Dl~~~--~~~~-~~-~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPN-WHRDLVRVCGNIPIVLCGNKVDIKDR--KVKA-KQ-ITFHRKK--NLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEEchhcccc--cCCH-HH-HHHHHHc--CCEEEEEeCCCCCChHHHHHH
Confidence 9999999999975 99999887778999999999999743 2222 22 2233322 237999999999999999999
Q ss_pred HHHHHhC
Q 008219 175 AQKAVLH 181 (573)
Q Consensus 175 i~~~~~~ 181 (573)
+.+.+..
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9987653
No 59
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=2e-24 Score=201.93 Aligned_cols=158 Identities=30% Similarity=0.446 Sum_probs=122.4
Q ss_pred ceEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCCCCCCC---Ceeec--------ccccCCceeEEEEeCCCCccchh
Q 008219 16 GVRIVVCGEKGTGKSSLIV-TAAADT-----FPANVPPVLP---PTRLP--------EDFYPDRVPITIIDTPSSVEDRG 78 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin-~l~~~~-----~~~~~~~~~~---~~~~~--------~~~~~~~~~~~i~Dt~G~~~~~~ 78 (573)
.+||+++|++|||||||+. ++.++. +...+.++.+ ..... ..+++..+.+.||||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999996 665543 3344444432 12211 13456688999999999875 3
Q ss_pred hhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------------cccccH
Q 008219 79 KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE------------------NQQVSL 140 (573)
Q Consensus 79 ~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~------------------~~~~~~ 140 (573)
....+++.+|++++|||++++.||+++...|.+.++...++.|++|||||+|+... .+.+..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 45568999999999999999999999976699999887678999999999998641 134554
Q ss_pred HHHHHHHHHHhcccCeEEEecCCCCCCchhHHHHHHHH
Q 008219 141 EQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKA 178 (573)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 178 (573)
++ ...+++.++. +|+||||++|.||+++|+.+++.
T Consensus 160 ~e-~~~~a~~~~~--~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ET-GRAVAKELGI--PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HH-HHHHHHHhCC--EEEEcCCCCCCCHHHHHHHHHHh
Confidence 44 4667777763 89999999999999999998763
No 60
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.92 E-value=2.5e-24 Score=197.08 Aligned_cols=159 Identities=21% Similarity=0.358 Sum_probs=128.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
.+||+++|++|||||||+++++++.+...+.++.+... ....+....+.+.+|||||++.+......+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999888766544443322 3334445567899999999999888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
||+++++++..+.. |+..++... ++.|+++|+||+|+... +.+..++ ...+...++ .+++++||++|.|++++|
T Consensus 82 ~d~~~~~s~~~l~~-~~~~~~~~~~~~~~~iiv~nK~Dl~~~-~~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 82 YDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTDK-RVVDYSE-AQEFADELG--IPFLETSAKNATNVEQAF 156 (166)
T ss_pred EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEEChhcccc-cCCCHHH-HHHHHHHcC--CeEEEEECCCCcCHHHHH
Confidence 99999999999986 999887765 57999999999998765 3343333 344555554 289999999999999999
Q ss_pred HHHHHHH
Q 008219 173 YYAQKAV 179 (573)
Q Consensus 173 ~~i~~~~ 179 (573)
..+.+.+
T Consensus 157 ~~i~~~~ 163 (166)
T cd01869 157 MTMAREI 163 (166)
T ss_pred HHHHHHH
Confidence 9998865
No 61
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=2.1e-24 Score=201.73 Aligned_cols=163 Identities=26% Similarity=0.405 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeccccc-CCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFY-PDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+||+|+|++|||||||+++|.++.+...+.++.... ....... ...+.+.||||||++.+......+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999998876655543322 2223333 45678999999999998888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc---ccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN---QQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
|++++.+++++...|+..+....++.|+++|+||+|+.... +.+.. +....+...++. .++++|||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~-~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTP-AQAESVAKKQGA-FAYLECSAKTMENVEEV 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCH-HHHHHHHHHcCC-cEEEEccCCCCCCHHHH
Confidence 99999999999767998887766789999999999986541 12222 334555556553 27999999999999999
Q ss_pred HHHHHHHHhC
Q 008219 172 FYYAQKAVLH 181 (573)
Q Consensus 172 ~~~i~~~~~~ 181 (573)
|..+++.++.
T Consensus 159 f~~l~~~~~~ 168 (187)
T cd04132 159 FDTAIEEALK 168 (187)
T ss_pred HHHHHHHHHh
Confidence 9999987754
No 62
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.92 E-value=3e-24 Score=196.06 Aligned_cols=158 Identities=22% Similarity=0.368 Sum_probs=127.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
.+||+++|++|||||||++++++..+...++++.... .....+.+..+.+.+|||||++++......+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999988877765554432 234445566678999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 95 ACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
|++++.+++.+.. |...+.+. ..+.|+++|+||+|+... +.+...+ ...+...++ . +++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~-~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQ-RKVSREE-GQELARKLK-I-PYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCcccccc-ceecHHH-HHHHHHHcC-C-cEEEeeCCCCCCHHHHH
Confidence 9999999999985 77777653 357899999999999765 3333333 344555554 2 89999999999999999
Q ss_pred HHHHHH
Q 008219 173 YYAQKA 178 (573)
Q Consensus 173 ~~i~~~ 178 (573)
+.+++.
T Consensus 157 ~~l~~~ 162 (164)
T cd04145 157 HDLVRV 162 (164)
T ss_pred HHHHHh
Confidence 999875
No 63
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=99.92 E-value=1.3e-25 Score=174.67 Aligned_cols=88 Identities=58% Similarity=1.063 Sum_probs=84.7
Q ss_pred CCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHHcCCcchhhHHHhhhcCCCCcccccccC-CCCCCCCCC
Q 008219 231 NSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELI-PYSAFKRAP 309 (573)
Q Consensus 231 ~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~-p~~~~~~~~ 309 (573)
+.+|...+++++++++++..|++++++|||++||++|+++|+++||+|++|+|||+|||+|+|.|.++++ | .+++++
T Consensus 1 n~pL~~~el~~ik~~v~~~~~~gv~~~GiT~~GFl~L~~lfierGR~ETtW~vLR~FgY~d~L~L~d~~l~p--~l~v~~ 78 (89)
T PF08356_consen 1 NKPLQPQELEDIKKVVRENIPDGVNDNGITLDGFLFLNKLFIERGRHETTWTVLRKFGYDDDLSLSDDFLYP--KLDVPP 78 (89)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCcCCCccchhhHHHHHHHHHHhCcchHHHHHHHHcCCCCcceeccccCCC--CccCCC
Confidence 3588999999999999999999999999999999999999999999999999999999999999999999 7 899999
Q ss_pred CCceecCHhHH
Q 008219 310 DQSVELTNEAI 320 (573)
Q Consensus 310 ~~~~~ls~~~~ 320 (573)
++++|||+.|+
T Consensus 79 ~~svELS~~gy 89 (89)
T PF08356_consen 79 DQSVELSPEGY 89 (89)
T ss_pred CCeeecCcCcC
Confidence 99999999874
No 64
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.92 E-value=2.3e-24 Score=200.22 Aligned_cols=161 Identities=19% Similarity=0.270 Sum_probs=129.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eccccc----------CCceeEEEEeCCCCccchhhhHh
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFY----------PDRVPITIIDTPSSVEDRGKLGE 82 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~i~Dt~G~~~~~~~~~~ 82 (573)
..+||+++|++|||||||++++.++.+...+.++.+... ....+. ...+.+.||||||++.+......
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 458999999999999999999999988777655443222 122222 34588999999999999889999
Q ss_pred hhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEe
Q 008219 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIEC 160 (573)
Q Consensus 83 ~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (573)
+++.+|++++|||++++.++.++.. |+..+... .++.|+++|+||+|+... +.+..++ ...+++.++ .+++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~-~~v~~~~-~~~~~~~~~--~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQ-RQVSEEQ-AKALADKYG--IPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhc-CccCHHH-HHHHHHHcC--CeEEEE
Confidence 9999999999999999999999985 99888764 357899999999999764 3344333 456666665 289999
Q ss_pred cCCCCCCchhHHHHHHHHHh
Q 008219 161 SALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 161 Sa~~~~gi~~l~~~i~~~~~ 180 (573)
||++|.|++++|+.+.+.+.
T Consensus 158 Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987654
No 65
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.92 E-value=3.7e-24 Score=195.52 Aligned_cols=158 Identities=25% Similarity=0.401 Sum_probs=126.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEe
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D 95 (573)
+||+|+|++|||||||+++|++..+...++++... ......+....+.+.+|||||++++...+..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999998887776554433 23444555667889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 96 CDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
++++++++.+.. |...+... ..++|+++|+||+|+... +....+ ....+...++ .++++|||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~-~~~~~~-~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESE-RVVSTE-EGKELARQWG--CPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-ceEcHH-HHHHHHHHcC--CEEEEeecCCCCCHHHHHH
Confidence 999999999875 77766542 247899999999999764 333333 3344555554 3899999999999999999
Q ss_pred HHHHHH
Q 008219 174 YAQKAV 179 (573)
Q Consensus 174 ~i~~~~ 179 (573)
.+.+.+
T Consensus 156 ~l~~~~ 161 (164)
T smart00173 156 DLVREI 161 (164)
T ss_pred HHHHHH
Confidence 998754
No 66
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.92 E-value=3.4e-24 Score=196.41 Aligned_cols=159 Identities=20% Similarity=0.288 Sum_probs=128.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+||+++|++|||||||+++|+++.+...+.++.+... ....+.+..+.+.+|||||++.+......+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998777665544322 34455566789999999999988888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC------CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCc
Q 008219 95 ACDRPETLDELSTFWLPELRRLE------VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~------~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (573)
|++++.+++.+.. |+..+.+.. .+.|+++|+||+|+... +....++. ..+....+ .+++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~-~~~~~~~~--~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDS-WLKEMKQEGGPHGNMENIVVVVCANKIDLTKH-RAVSEDEG-RLWAESKG--FKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhccccccCCCceEEEEEEchhcccc-cccCHHHH-HHHHHHcC--CeEEEEECCCCCCH
Confidence 9999999999875 988887643 36899999999999743 23333333 33445554 38999999999999
Q ss_pred hhHHHHHHHHHh
Q 008219 169 PEVFYYAQKAVL 180 (573)
Q Consensus 169 ~~l~~~i~~~~~ 180 (573)
+++++.+++.++
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 67
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.92 E-value=3.2e-24 Score=196.92 Aligned_cols=159 Identities=20% Similarity=0.289 Sum_probs=126.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEe
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D 95 (573)
||+++|++|||||||+++++++.|...+.++.+... ....+.+..+.+.||||||++.+......+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 899999999999999999999999877765544322 334445557889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhc-C-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 96 CDRPETLDELSTFWLPELRRL-E-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~-~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
++++.++..+.. |++.+.+. . .+.|+++|+||+|+.........++....+..+++. +++++||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA--EYWSVSALSGENVREFFF 158 (170)
T ss_pred CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC--eEEEEECCCCCCHHHHHH
Confidence 999999999985 99887553 2 247899999999986541111123333445555552 799999999999999999
Q ss_pred HHHHHH
Q 008219 174 YAQKAV 179 (573)
Q Consensus 174 ~i~~~~ 179 (573)
.+.+.+
T Consensus 159 ~l~~~~ 164 (170)
T cd04108 159 RVAALT 164 (170)
T ss_pred HHHHHH
Confidence 998865
No 68
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.92 E-value=5e-24 Score=200.97 Aligned_cols=162 Identities=25% Similarity=0.329 Sum_probs=131.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
..+||+|+|++|||||||+++|.+..+...+.++.+... ....+.+..+.+.||||||++.+......+++.+|++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 468999999999999999999999888766555443222 333444556789999999999998888999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
|||++++.+++.+.. |++.++......|+++|+||+|+... +.+..++ ...+...++ .+++++||++|.||+++|
T Consensus 85 v~D~~~~~s~~~~~~-~~~~i~~~~~~~piivVgNK~Dl~~~-~~~~~~~-~~~~~~~~~--~~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 85 VYDVTNGESFVNVKR-WLQEIEQNCDDVCKVLVGNKNDDPER-KVVETED-AYKFAGQMG--ISLFETSAKENINVEEMF 159 (199)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccccc-cccCHHH-HHHHHHHcC--CEEEEEECCCCcCHHHHH
Confidence 999999999999985 99999887778999999999998764 3333333 344555554 389999999999999999
Q ss_pred HHHHHHHhC
Q 008219 173 YYAQKAVLH 181 (573)
Q Consensus 173 ~~i~~~~~~ 181 (573)
+++.+.++.
T Consensus 160 ~~l~~~~~~ 168 (199)
T cd04110 160 NCITELVLR 168 (199)
T ss_pred HHHHHHHHH
Confidence 999998764
No 69
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.8e-25 Score=184.00 Aligned_cols=142 Identities=20% Similarity=0.324 Sum_probs=131.5
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
....+|++++|+.|.|||+|+++|+.+++...+..+.+.++..+.+.+.++..+++||||+|+++|+++ ++.||++|.
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSV--tRsYYRGAA 83 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSV--TRSYYRGAA 83 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHH--HHHHhcccc
Confidence 345689999999999999999999999999999999999999999999988889999999999999999 999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCcc
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVL 571 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~ 571 (573)
+.++|||+++++||+.+..|+.++....+. ++-++++|||.||...+ +...++.+||++..+-|
T Consensus 84 GAlLVYD~TsrdsfnaLtnWL~DaR~lAs~---nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~f 148 (214)
T KOG0086|consen 84 GALLVYDITSRDSFNALTNWLTDARTLASP---NIVVILCGNKKDLDPEREVTFLEASRFAQENELMF 148 (214)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHhhCCC---cEEEEEeCChhhcChhhhhhHHHHHhhhcccceee
Confidence 999999999999999999999999887765 89999999999998877 67899999999987644
No 70
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.92 E-value=3.7e-24 Score=197.62 Aligned_cols=161 Identities=24% Similarity=0.415 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEe
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP-PTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D 95 (573)
+||+++|++|||||||+++++++.+...+.++.. .......+....+.+.+|||||++.+......+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 5899999999999999999999988766555433 222344555566789999999999988888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------ccccHHHHHHHHHHHhcccCeEEEecCCC
Q 008219 96 CDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIECSALK 164 (573)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (573)
++++.+++.+...|.+.++...+++|+++|+||+|+.... +.+..+ ....+++.++.. ++++|||++
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~-~~~e~Sa~~ 158 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVE-QGQKLAKEIGAH-CYVECSALT 158 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHH-HHHHHHHHcCCC-EEEEecCCc
Confidence 9999999999877999888767789999999999986541 123333 234555666543 799999999
Q ss_pred CCCchhHHHHHHHHH
Q 008219 165 QIQVPEVFYYAQKAV 179 (573)
Q Consensus 165 ~~gi~~l~~~i~~~~ 179 (573)
|.|++++|+.++..+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998764
No 71
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.92 E-value=4e-24 Score=194.86 Aligned_cols=156 Identities=19% Similarity=0.312 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eccccc--CCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFY--PDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
+||+++|++|||||||+++++++.+...+.++.+... ....+. ...+.+.+|||||++.+......+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999888766554433221 223333 557889999999999998888999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
|||++++++++.+.. |+..+.....++|+++|+||+|+... +.+..+ ....+...++. +++++||++|.|+++++
T Consensus 81 v~d~~~~~s~~~l~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~~Sa~~~~~v~~l~ 155 (162)
T cd04106 81 VFSTTDRESFEAIES-WKEKVEAECGDIPMVLVQTKIDLLDQ-AVITNE-EAEALAKRLQL--PLFRTSVKDDFNVTELF 155 (162)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEEChhcccc-cCCCHH-HHHHHHHHcCC--eEEEEECCCCCCHHHHH
Confidence 999999999999875 99888876678999999999999765 334433 33455555552 89999999999999999
Q ss_pred HHHHH
Q 008219 173 YYAQK 177 (573)
Q Consensus 173 ~~i~~ 177 (573)
+++..
T Consensus 156 ~~l~~ 160 (162)
T cd04106 156 EYLAE 160 (162)
T ss_pred HHHHH
Confidence 98865
No 72
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.92 E-value=3.6e-24 Score=197.45 Aligned_cols=159 Identities=27% Similarity=0.406 Sum_probs=127.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEe
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D 95 (573)
+||+++|++|||||||++++.++.+...++++... ......+....+.+.+|||||++.+...+..+++.+|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 68999999999999999999998888776665422 22344455556889999999999998888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------ccccHHHHHHHHHHHhcccCeEEEecCCC
Q 008219 96 CDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIECSALK 164 (573)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (573)
++++.+|+++...|+..++...++.|+++|+||+|+.... +.+..++ ...++...+ ..++++|||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~a~~~~-~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSR-AKALAEKIG-ACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHH-HHHHHHHhC-CCeEEEEeCCC
Confidence 9999999998767998888765689999999999986531 2333333 345555554 23899999999
Q ss_pred CCCchhHHHHHHH
Q 008219 165 QIQVPEVFYYAQK 177 (573)
Q Consensus 165 ~~gi~~l~~~i~~ 177 (573)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.92 E-value=7.3e-24 Score=198.96 Aligned_cols=164 Identities=21% Similarity=0.283 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eecccccCCceeEEEEeCCCCccchhh--------hHhhhcc
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYPDRVPITIIDTPSSVEDRGK--------LGEELRR 86 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~ 86 (573)
+||+|+|++|||||||+++|+++.|...+.++.+.. .....+.+..+.+.||||||...+... ...+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999998877655443321 123344555588999999997654211 2345889
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecC
Q 008219 87 ADAVVLTYACDRPETLDELSTFWLPELRRL----EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (573)
Q Consensus 87 ad~il~v~D~~~~~s~~~~~~~~~~~l~~~----~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (573)
+|++|+|||++++.+++.+.. |.+.+... ..++|+++|+||+|+... +.+..+ ....+..+... .++++|||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~-~~~~~~-~~~~~~~~~~~-~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRH-RFAPRH-VLSVLVRKSWK-CGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECcccccc-ccccHH-HHHHHHHHhcC-CcEEEecC
Confidence 999999999999999999885 87776553 357999999999999764 333333 33334332222 38999999
Q ss_pred CCCCCchhHHHHHHHHHhCCCC
Q 008219 163 LKQIQVPEVFYYAQKAVLHPTG 184 (573)
Q Consensus 163 ~~~~gi~~l~~~i~~~~~~~~~ 184 (573)
++|.|++++|+.+.+.++....
T Consensus 157 k~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 157 KYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCCCCHHHHHHHHHHHhhccCC
Confidence 9999999999999998765543
No 74
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=5.5e-24 Score=194.64 Aligned_cols=160 Identities=19% Similarity=0.323 Sum_probs=127.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
..+||+++|++|||||||++++..+.+...+.++.+... ....+....+.+.+|||||++.+......+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 358999999999999999999999888776555443222 333444445789999999999888888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
|||++++.+++.+.. |+..+.... .++|+++|+||+|+... +.+...+ ...++..++. ..++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~-~~~~~~~~~~-~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 82 AYDITRRSSFESVPH-WIEEVEKYGASNVVLLLIGNKCDLEEQ-REVLFEE-ACTLAEKNGM-LAVLETSAKESQNVEEA 157 (165)
T ss_pred EEECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEECcccccc-cccCHHH-HHHHHHHcCC-cEEEEEECCCCCCHHHH
Confidence 999999999998874 998887643 57999999999999765 3333333 3445555543 37899999999999999
Q ss_pred HHHHHHH
Q 008219 172 FYYAQKA 178 (573)
Q Consensus 172 ~~~i~~~ 178 (573)
++.+.+.
T Consensus 158 ~~~l~~~ 164 (165)
T cd01864 158 FLLMATE 164 (165)
T ss_pred HHHHHHh
Confidence 9998764
No 75
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.92 E-value=5.2e-24 Score=206.18 Aligned_cols=163 Identities=20% Similarity=0.264 Sum_probs=128.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEe
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D 95 (573)
+||+++|++|||||||+++|+++.+...+.++.+.. .....+.+..+.+.||||+|++.+..+...++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 589999999999999999999998887766655432 3444555667889999999999888888888999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhc----------CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCC
Q 008219 96 CDRPETLDELSTFWLPELRRL----------EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (573)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~----------~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (573)
++++.+|+++.. |...+... ..++|+|+|+||+|+... +.+..++... +..... ...+++|||++|
T Consensus 81 v~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~-~~v~~~ei~~-~~~~~~-~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFP-REVQRDEVEQ-LVGGDE-NCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhc-cccCHHHHHH-HHHhcC-CCEEEEEeCCCC
Confidence 999999999975 87777542 247999999999999764 3444444322 222211 237999999999
Q ss_pred CCchhHHHHHHHHHhCCC
Q 008219 166 IQVPEVFYYAQKAVLHPT 183 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~~~~ 183 (573)
.|++++|+.+.+....|.
T Consensus 157 ~gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 157 SNLDEMFRALFSLAKLPN 174 (247)
T ss_pred CCHHHHHHHHHHHhcccc
Confidence 999999999998765444
No 76
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.92 E-value=4.1e-24 Score=194.83 Aligned_cols=158 Identities=29% Similarity=0.445 Sum_probs=135.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEe
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D 95 (573)
||+++|++|||||||+++|.++.+...+.++.+.. .....+....+.+.|||++|++.+.......++.+|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999888766654332 2555566778889999999999998888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHH
Q 008219 96 CDRPETLDELSTFWLPELRRLEV-KVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYY 174 (573)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (573)
++++.|++.+. .|++.+....+ +.|++|||||+|+... +.+..++ ...++..++ .++++|||+++.||.++|..
T Consensus 81 ~~~~~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~~-~~v~~~~-~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 81 VTDEESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSDE-REVSVEE-AQEFAKELG--VPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp TTBHHHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTGGGG-SSSCHHH-HHHHHHHTT--SEEEEEBTTTTTTHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccceeeecccccccc-ccchhhH-HHHHHHHhC--CEEEEEECCCCCCHHHHHHH
Confidence 99999999999 59999988776 6999999999998874 4566554 466777777 39999999999999999999
Q ss_pred HHHHHh
Q 008219 175 AQKAVL 180 (573)
Q Consensus 175 i~~~~~ 180 (573)
+++.++
T Consensus 156 ~i~~i~ 161 (162)
T PF00071_consen 156 LIRKIL 161 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 77
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.92 E-value=8.8e-24 Score=193.90 Aligned_cols=160 Identities=23% Similarity=0.331 Sum_probs=128.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
.+||+|+|++|||||||++++++..+...++++.+... ....+......+.+|||||++.+......+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999888776555443322 3344455567899999999998888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 94 YACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
||++++.++..+.. |+..++.. .++.|+++|+||+|+... +.+..++. ..+....+ .+++++||++|.|++++|
T Consensus 84 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~-~~~~~~~~--~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 84 YDITRRETFNHLTS-WLEDARQHSNSNMTIMLIGNKCDLESR-REVSYEEG-EAFAKEHG--LIFMETSAKTASNVEEAF 158 (168)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccccc-cCCCHHHH-HHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence 99999999999985 99888764 368999999999999754 33444333 34445544 279999999999999999
Q ss_pred HHHHHHHh
Q 008219 173 YYAQKAVL 180 (573)
Q Consensus 173 ~~i~~~~~ 180 (573)
..+.+.++
T Consensus 159 ~~~~~~~~ 166 (168)
T cd01866 159 INTAKEIY 166 (168)
T ss_pred HHHHHHHH
Confidence 99987653
No 78
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.92 E-value=6.8e-24 Score=202.50 Aligned_cols=160 Identities=21% Similarity=0.239 Sum_probs=129.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eecccccC-CceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYP-DRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
+||+|+|++|||||||+++|+++.+...+.++.+.. .....+.. ..+.+.||||+|++.+......+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999998877766654422 23333433 468899999999998888899999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 94 YACDRPETLDELSTFWLPELRRLE----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
||++++.+++.+.. |...+.... .+.|+++|+||+|+... +.+..+ ....+...++ .++++|||++|.|++
T Consensus 81 ~D~t~~~s~~~~~~-w~~~l~~~~~~~~~~~piilVgNK~DL~~~-~~v~~~-~~~~~~~~~~--~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLED-WYSMVRKVLKSSETQPLVVLVGNKTDLEHN-RTVKDD-KHARFAQANG--MESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhccccCCCceEEEEEECcccccc-cccCHH-HHHHHHHHcC--CEEEEEECCCCCCHH
Confidence 99999999999975 999887643 35689999999999754 344433 3345566655 279999999999999
Q ss_pred hHHHHHHHHHhC
Q 008219 170 EVFYYAQKAVLH 181 (573)
Q Consensus 170 ~l~~~i~~~~~~ 181 (573)
++|+++.+.+..
T Consensus 156 ~lf~~l~~~l~~ 167 (215)
T cd04109 156 LLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 79
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.91 E-value=9.2e-24 Score=193.16 Aligned_cols=159 Identities=25% Similarity=0.332 Sum_probs=126.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
.+||+++|++|||||||+++|++..+...+.++.+... ..+.+....+.+.+|||||++.+......+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999999888766544443322 3344445557899999999998888889999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 94 YACDRPETLDELSTFWLPELRRLEV-KVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
||++++.++..+.. |+..++.... ++|+++|+||+|+... +....++ ...+....+ .++++|||++|.|+++++
T Consensus 83 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~pi~vv~nK~Dl~~~-~~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 83 YDITKKQTFENVER-WLKELRDHADSNIVIMLVGNKSDLRHL-RAVPTEE-AKAFAEKNG--LSFIETSALDGTNVEEAF 157 (165)
T ss_pred EECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc-ccCCHHH-HHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence 99999999999985 9998877554 5999999999998765 3343333 334444443 389999999999999999
Q ss_pred HHHHHHH
Q 008219 173 YYAQKAV 179 (573)
Q Consensus 173 ~~i~~~~ 179 (573)
+.+.+.+
T Consensus 158 ~~l~~~i 164 (165)
T cd01868 158 KQLLTEI 164 (165)
T ss_pred HHHHHHh
Confidence 9998754
No 80
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.91 E-value=7.7e-24 Score=194.69 Aligned_cols=159 Identities=24% Similarity=0.312 Sum_probs=127.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
..+||+++|++|||||||+++++++.+...+.++.+.. .....+....+.+.||||||++.+......+++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 56999999999999999999999988876654433332 2344556777889999999999998889999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCC
Q 008219 93 TYACDRPETLDELSTFWLPELRRLE-----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (573)
|||++++.+++.+.. |...+.... .+.|+++|+||+|+.. +.+..+ ....+...++. .+++++||++|.|
T Consensus 84 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~-~~~~~~~~~~~-~~~~e~Sa~~~~~ 158 (170)
T cd04116 84 TFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIPE--RQVSTE-EAQAWCRENGD-YPYFETSAKDATN 158 (170)
T ss_pred EEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECccccc--cccCHH-HHHHHHHHCCC-CeEEEEECCCCCC
Confidence 999999999999875 887665422 4689999999999873 234433 33455566552 3799999999999
Q ss_pred chhHHHHHHHH
Q 008219 168 VPEVFYYAQKA 178 (573)
Q Consensus 168 i~~l~~~i~~~ 178 (573)
+.++|+.+++.
T Consensus 159 v~~~~~~~~~~ 169 (170)
T cd04116 159 VAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 81
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.91 E-value=8.6e-24 Score=192.53 Aligned_cols=157 Identities=26% Similarity=0.356 Sum_probs=127.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+||+|+|++|||||||+++|++..+...++++.+... ....+....+.+.+|||||++.+......+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 6899999999999999999999988766555443322 34455566688999999999988888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 95 ACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
|++++.++..+.. |+..++.. .+++|+++|+||+|+... +.+..++. ..+....+ .+++++||+++.|+.++|+
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~-~~~~~~~~-~~~~~~~~--~~~~~~Sa~~~~~i~~~~~ 155 (161)
T cd04113 81 DITNRTSFEALPT-WLSDARALASPNIVVILVGNKSDLADQ-REVTFLEA-SRFAQENG--LLFLETSALTGENVEEAFL 155 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcchh-ccCCHHHH-HHHHHHcC--CEEEEEECCCCCCHHHHHH
Confidence 9999999999885 88877654 368999999999999764 33443433 44555555 3899999999999999999
Q ss_pred HHHHH
Q 008219 174 YAQKA 178 (573)
Q Consensus 174 ~i~~~ 178 (573)
++.+.
T Consensus 156 ~~~~~ 160 (161)
T cd04113 156 KCARS 160 (161)
T ss_pred HHHHh
Confidence 99874
No 82
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=1.1e-23 Score=197.41 Aligned_cols=161 Identities=23% Similarity=0.333 Sum_probs=128.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCC-ee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPA-NVPPVLPP-TR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~-~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
+||+|+|++|||||||+++|.++.+.. .++++.+. .. ....+.+..+.+.||||||++.+......+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988753 34443332 22 2344556678899999999998888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
||++++.+++++.. |+..+.... .++|+++|+||+|+... +.+... ....+...++ .+++++||++|.|++++|
T Consensus 81 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~NK~Dl~~~-~~~~~~-~~~~l~~~~~--~~~~e~Sa~~~~~v~~l~ 155 (191)
T cd04112 81 YDITNKASFDNIRA-WLTEIKEYAQEDVVIMLLGNKADMSGE-RVVKRE-DGERLAKEYG--VPFMETSAKTGLNVELAF 155 (191)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccchhc-cccCHH-HHHHHHHHcC--CeEEEEeCCCCCCHHHHH
Confidence 99999999999985 998888765 37899999999999754 333333 3345555555 389999999999999999
Q ss_pred HHHHHHHhCC
Q 008219 173 YYAQKAVLHP 182 (573)
Q Consensus 173 ~~i~~~~~~~ 182 (573)
.++.+.+...
T Consensus 156 ~~l~~~~~~~ 165 (191)
T cd04112 156 TAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHh
Confidence 9999887543
No 83
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.91 E-value=1.1e-23 Score=194.69 Aligned_cols=162 Identities=24% Similarity=0.431 Sum_probs=127.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+.||+|+|++|||||||+++|.++.+...+.++.... .....+....+.+.+|||||++.+......++..+|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 3689999999999999999999998877665544332 234455566678999999999988887778899999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-----------cccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-----------QVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
|++++.+++.+...|...++....++|+++|+||+|+..... .+.. .....+...++.. ++++|||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~-~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKP-EEGRDMANKIGAF-GYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccH-HHHHHHHHHcCCc-EEEEeccc
Confidence 999999999997779998887667899999999999865310 1111 2223444444432 79999999
Q ss_pred CCCCchhHHHHHHHHH
Q 008219 164 KQIQVPEVFYYAQKAV 179 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~~ 179 (573)
+|.|++++|+.+.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998753
No 84
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.91 E-value=9.4e-25 Score=183.89 Aligned_cols=163 Identities=21% Similarity=0.326 Sum_probs=136.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP--TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
..-.|||+++|..-||||||+-|++.++|....-++... ....+.+......+.||||+|+++|....+.|+++++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 345799999999999999999999999987664332211 114455556677899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
++|||+++++||+.++. |..+|+..- ..+.+++||||+|+..+ +.+...++ +..+...+. .|+++||+.+.||.
T Consensus 90 lLVyDITDrdSFqKVKn-WV~Elr~mlGnei~l~IVGNKiDLEee-R~Vt~qeA-e~YAesvGA--~y~eTSAk~N~Gi~ 164 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKN-WVLELRTMLGNEIELLIVGNKIDLEEE-RQVTRQEA-EAYAESVGA--LYMETSAKDNVGIS 164 (218)
T ss_pred EEEEeccchHHHHHHHH-HHHHHHHHhCCeeEEEEecCcccHHHh-hhhhHHHH-HHHHHhhch--hheecccccccCHH
Confidence 99999999999999996 999998853 56889999999999987 77777665 556666664 79999999999999
Q ss_pred hHHHHHHHHHh
Q 008219 170 EVFYYAQKAVL 180 (573)
Q Consensus 170 ~l~~~i~~~~~ 180 (573)
++|+.+....+
T Consensus 165 elFe~Lt~~Mi 175 (218)
T KOG0088|consen 165 ELFESLTAKMI 175 (218)
T ss_pred HHHHHHHHHHH
Confidence 99999887664
No 85
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.91 E-value=1.1e-24 Score=196.72 Aligned_cols=168 Identities=27% Similarity=0.479 Sum_probs=145.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCeeeccccc-CCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANV-PPVLPPTRLPEDFY-PDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
..+|++|||+.+||||+|+-.+..+.|...+ |++.+.+...+.++ +..+.+.+|||+|+++|...++..+.++|++++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 5689999999999999999999999998884 55555666777885 888999999999999999888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------ccccHHHHHHHHHHHhcccCeEEEec
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIECS 161 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (573)
||++.++.|++++.++|+++++.++++.|+||||+|.|+..+. ..+.. +....+++++|.. .|+|||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~-~~g~~lA~~iga~-~y~EcS 160 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTY-EQGLELAKEIGAV-KYLECS 160 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccH-HHHHHHHHHhCcc-eeeeeh
Confidence 9999999999999999999999999999999999999998542 11222 3346777888764 899999
Q ss_pred CCCCCCchhHHHHHHHHHhCCCC
Q 008219 162 ALKQIQVPEVFYYAQKAVLHPTG 184 (573)
Q Consensus 162 a~~~~gi~~l~~~i~~~~~~~~~ 184 (573)
|++..|++++|+.+++.++.+..
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcccc
Confidence 99999999999999999887653
No 86
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.91 E-value=8.6e-24 Score=198.06 Aligned_cols=154 Identities=16% Similarity=0.286 Sum_probs=126.2
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCc
Q 008219 22 CGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRP 99 (573)
Q Consensus 22 vG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~ 99 (573)
+|++|||||||+++++.+.+...+.++.+... ....+....+.+.||||+|++.+..++..+++.+|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888777665554322 3444556678999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 100 ETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 100 ~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
.++..+.. |++.+++.++++|++||+||+|+... .+..+. ..+....+ .++++|||++|.||.++|.++++.+
T Consensus 81 ~S~~~i~~-w~~~i~~~~~~~piilvgNK~Dl~~~--~v~~~~--~~~~~~~~--~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPN-WHRDLVRVCENIPIVLCGNKVDVKDR--KVKAKS--ITFHRKKN--LQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHH-HHHHHHHhCCCCCEEEEEECcccccc--cCCHHH--HHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999985 99999887779999999999998643 233322 23444433 3899999999999999999999887
Q ss_pred hCC
Q 008219 180 LHP 182 (573)
Q Consensus 180 ~~~ 182 (573)
...
T Consensus 154 ~~~ 156 (200)
T smart00176 154 IGD 156 (200)
T ss_pred Hhc
Confidence 543
No 87
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=1.3e-23 Score=192.87 Aligned_cols=163 Identities=18% Similarity=0.194 Sum_probs=127.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCe-e-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPT-R-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
++.+||+++|++|||||||+++|+++.+. ..+.++.+.. . ..+.+.+..+.+.+||++|.+.+......+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 57899999999999999999999999987 6666654432 2 3344555567899999999998888888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
++|||++++.+++.+.. |+..+... .++|+++|+||+|+... +..... ....+.+.++. ..++++||++|.|+++
T Consensus 82 llv~d~~~~~s~~~~~~-~~~~~~~~-~~~p~iiv~NK~Dl~~~-~~~~~~-~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 156 (169)
T cd01892 82 CLVYDSSDPKSFSYCAE-VYKKYFML-GEIPCLFVAAKADLDEQ-QQRYEV-QPDEFCRKLGL-PPPLHFSSKLGDSSNE 156 (169)
T ss_pred EEEEeCCCHHHHHHHHH-HHHHhccC-CCCeEEEEEEccccccc-cccccc-CHHHHHHHcCC-CCCEEEEeccCccHHH
Confidence 99999999999998864 77766432 37999999999998654 222111 22344555543 2469999999999999
Q ss_pred HHHHHHHHHhC
Q 008219 171 VFYYAQKAVLH 181 (573)
Q Consensus 171 l~~~i~~~~~~ 181 (573)
+|+.+.+.+..
T Consensus 157 lf~~l~~~~~~ 167 (169)
T cd01892 157 LFTKLATAAQY 167 (169)
T ss_pred HHHHHHHHhhC
Confidence 99999987654
No 88
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.91 E-value=2.3e-23 Score=191.08 Aligned_cols=161 Identities=27% Similarity=0.412 Sum_probs=129.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
.+||+++|++|||||||++++.++.+...+.++.+.. .....+....+.+.+|||||++.+..+.+.+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 4799999999999999999999988877655544332 234455566688999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 95 ACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
|++++++++.... |...+... ..+.|+++|+||+|+... +....++ ...+...++.. +++++||++|.|++++|
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~-~~~~~~~-~~~~~~~~~~~-~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDD-RQVSRED-GVSLSQQWGNV-PFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhcccc-CccCHHH-HHHHHHHcCCc-eEEEeeCCCCCCHHHHH
Confidence 9999999999975 88877652 357999999999999765 3343333 33455555533 89999999999999999
Q ss_pred HHHHHHHh
Q 008219 173 YYAQKAVL 180 (573)
Q Consensus 173 ~~i~~~~~ 180 (573)
+++.+.++
T Consensus 157 ~~i~~~~~ 164 (168)
T cd04177 157 IDLVRQII 164 (168)
T ss_pred HHHHHHHh
Confidence 99987653
No 89
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=1.9e-23 Score=195.43 Aligned_cols=160 Identities=24% Similarity=0.337 Sum_probs=128.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+||+++|++|||||||+++|.++.+...+.++.+... ....+.+..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999988765554443322 33445556788999999999988888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
|++++.++..+.. |++.++... .+.|+++|+||+|+... +.+..++. ..+....+ . +++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~i~~-~~~~i~~~~~~~~~~ivv~nK~Dl~~~-~~v~~~~~-~~~~~~~~-~-~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKF-WINEINRYARENVIKVIVANKSDLVNN-KVVDSNIA-KSFCDSLN-I-PFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECCCCccc-ccCCHHHH-HHHHHHcC-C-eEEEEeCCCCCCHHHHHH
Confidence 9999999999986 999887754 46899999999998754 33333332 33444443 2 899999999999999999
Q ss_pred HHHHHHhC
Q 008219 174 YAQKAVLH 181 (573)
Q Consensus 174 ~i~~~~~~ 181 (573)
.+.+.+..
T Consensus 156 ~l~~~~~~ 163 (188)
T cd04125 156 LLVKLIIK 163 (188)
T ss_pred HHHHHHHH
Confidence 99987653
No 90
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.91 E-value=1.3e-23 Score=195.31 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=124.2
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+|+|.+|||||||+++|.++.+...+.++.+..+....+..++....+.+|||+|+++|..+ +..+++++|++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l--~~~~~~~ad~i 82 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTI--FRSYSRGAQGI 82 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHhcCCCEE
Confidence 4589999999999999999999999888777777777777777777766678999999999999998 88899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.||+.+..|+.++....+ ++|++|||||+||...+ +..++++++|++++++||
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~----~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~ 145 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAP----GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFF 145 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999976543 89999999999997654 568899999999998876
No 91
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.4e-24 Score=177.46 Aligned_cols=140 Identities=19% Similarity=0.249 Sum_probs=127.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
+..+||++||..|||||+|+++|..+-++.....+++.++-++++.+++++.+++||||+|+++|+++ ++.||+.|++
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsi--tqsyyrsaha 82 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSI--TQSYYRSAHA 82 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHH--HHHHhhhcce
Confidence 34689999999999999999999999999988899999999999999999999999999999999999 9999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCc
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMV 570 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 570 (573)
+|+|||++-..||+-+.+|+.++.++... ++--|+||||+|+.+.+ +....+++|++...+-
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~---kvlkilvgnk~d~~drrevp~qigeefs~~qdmy 145 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANN---KVLKILVGNKIDLADRREVPQQIGEEFSEAQDMY 145 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhc---ceEEEeeccccchhhhhhhhHHHHHHHHHhhhhh
Confidence 99999999999999999999999988654 67779999999998775 6677888888875543
No 92
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.91 E-value=2.3e-23 Score=190.27 Aligned_cols=158 Identities=20% Similarity=0.295 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCCee--eccccc-CCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAAD--TFPANVPPVLPPTR--LPEDFY-PDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~--~~~~~~~~~~~~~~--~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
+||+++|++|||||||+++|..+ .+..++.++.+... ....+. ...+.+.+|||||++.+..+...+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 46666655443222 223332 45689999999999888888899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
+|||++++.++..+. .|+..+.....++|+++|+||+|+... +.+...+. ..+...++ .++++|||++|.|++++
T Consensus 81 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~-~~~~~~~~--~~~~~~Sa~~~~gi~~l 155 (164)
T cd04101 81 LVYDVSNKASFENCS-RWVNKVRTASKHMPGVLVGNKMDLADK-AEVTDAQA-QAFAQANQ--LKFFKTSALRGVGYEEP 155 (164)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccc-cCCCHHHH-HHHHHHcC--CeEEEEeCCCCCChHHH
Confidence 999999999999887 499988876668999999999998765 33333222 23344444 37999999999999999
Q ss_pred HHHHHHHH
Q 008219 172 FYYAQKAV 179 (573)
Q Consensus 172 ~~~i~~~~ 179 (573)
++.+.+.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04101 156 FESLARAF 163 (164)
T ss_pred HHHHHHHh
Confidence 99998754
No 93
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.9e-24 Score=177.57 Aligned_cols=161 Identities=25% Similarity=0.339 Sum_probs=135.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
-+|++++|+.|.|||+|+.+|+.+++..+...+.+..- .-+.+..+.++++||||+|+++|.+....++++|-+.++|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 48999999999999999999999998777555444322 3344557789999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
||++++++|+.+.. |+..++... +++-|+++|||.|+... +++...++... +++-. + .+.++||++|+|++|.|
T Consensus 89 YD~TsrdsfnaLtn-WL~DaR~lAs~nIvviL~GnKkDL~~~-R~VtflEAs~F-aqEne-l-~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 89 YDITSRDSFNALTN-WLTDARTLASPNIVVILCGNKKDLDPE-REVTFLEASRF-AQENE-L-MFLETSALTGENVEEAF 163 (214)
T ss_pred EeccchhhHHHHHH-HHHHHHhhCCCcEEEEEeCChhhcChh-hhhhHHHHHhh-hcccc-e-eeeeecccccccHHHHH
Confidence 99999999999986 999998865 68899999999999988 78887776433 22221 2 68999999999999999
Q ss_pred HHHHHHHhC
Q 008219 173 YYAQKAVLH 181 (573)
Q Consensus 173 ~~i~~~~~~ 181 (573)
-.+.+.++.
T Consensus 164 l~c~~tIl~ 172 (214)
T KOG0086|consen 164 LKCARTILN 172 (214)
T ss_pred HHHHHHHHH
Confidence 988887754
No 94
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.91 E-value=4.4e-23 Score=197.31 Aligned_cols=157 Identities=23% Similarity=0.244 Sum_probs=123.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCC--CeeecccccCCceeEEEEeCCCCccchhhhHhhhc-cCCEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLP--PTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELR-RADAVVL 92 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-~ad~il~ 92 (573)
+||+++|++|||||||+++|+.+.+. ..++++.+ .....+.+....+.+.+|||||++ ......+++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988875 55555443 233455566677889999999987 233345666 9999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 93 TYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
|||++++.+|+.+.. |+..+.... .++|+|+|+||+|+... +.+..++. ..++..++ .+++++||++|.||++
T Consensus 79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~-~~v~~~~~-~~~a~~~~--~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARS-REVSVQEG-RACAVVFD--CKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhcccc-ceecHHHH-HHHHHHcC--CeEEEecCCCCCCHHH
Confidence 999999999998875 888887643 57999999999999765 44544433 34555554 2799999999999999
Q ss_pred HHHHHHHHHh
Q 008219 171 VFYYAQKAVL 180 (573)
Q Consensus 171 l~~~i~~~~~ 180 (573)
+|+.+.+.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 95
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.91 E-value=1e-23 Score=193.16 Aligned_cols=158 Identities=12% Similarity=0.100 Sum_probs=117.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
++.+||+++|++|||||||+++|..+.+....|+ .+.... .+....+.+.+|||||++.+...+..+++.+|++|+|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t-~g~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPT-VGFNVE--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccccCC-cccceE--EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4579999999999999999999988776543333 332222 2334578999999999998888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHH-Hhcc-cCeEEEecCCCCCCchh
Q 008219 94 YACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ-QFRE-IETCIECSALKQIQVPE 170 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~Sa~~~~gi~~ 170 (573)
||++++.++++....|.+.+... ..++|++||+||+|+... +..++....+.. .... ..++++|||++|.|+++
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA---MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC---CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 99999999998886454555432 257999999999998753 222322211100 1111 12689999999999999
Q ss_pred HHHHHHH
Q 008219 171 VFYYAQK 177 (573)
Q Consensus 171 l~~~i~~ 177 (573)
+|++|.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9998864
No 96
>PLN03118 Rab family protein; Provisional
Probab=99.91 E-value=4.4e-23 Score=196.46 Aligned_cols=166 Identities=26% Similarity=0.356 Sum_probs=129.5
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCC
Q 008219 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (573)
Q Consensus 11 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 88 (573)
......+||+|+|++|||||||+++|++..+... .++.+... ....++...+.+.||||||++.+......+++.+|
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCCc-CCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3345679999999999999999999998876433 33333222 23344555688999999999999998999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCC
Q 008219 89 AVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (573)
Q Consensus 89 ~il~v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (573)
++|+|||+++++++..+...|...+.... .+.|+++|+||+|+... +.+..++. ..+....+ .++++|||++|.
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~-~~i~~~~~-~~~~~~~~--~~~~e~SAk~~~ 163 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE-RDVSREEG-MALAKEHG--CLFLECSAKTRE 163 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc-CccCHHHH-HHHHHHcC--CEEEEEeCCCCC
Confidence 99999999999999999877877776532 46899999999999765 33333332 34444444 379999999999
Q ss_pred CchhHHHHHHHHHhC
Q 008219 167 QVPEVFYYAQKAVLH 181 (573)
Q Consensus 167 gi~~l~~~i~~~~~~ 181 (573)
|++++|+.+.+.+..
T Consensus 164 ~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 164 NVEQCFEELALKIME 178 (211)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987654
No 97
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.91 E-value=3e-23 Score=194.93 Aligned_cols=161 Identities=20% Similarity=0.283 Sum_probs=127.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPA-NVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
+||+|+|++|||||||+++|+++.+.. .+.++.+... ....+....+.+.+|||+|++.+......+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988864 4554444322 3345556667889999999998888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc---ccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 94 YACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN---QQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
||++++.+++.+.. |+..++...++.|+++|+||+|+.... +.+... ....+...++ .+++++||++|.|+++
T Consensus 81 ~d~~~~~s~~~~~~-~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~-~~~~~~~~~~--~~~~~~Sa~~~~gv~~ 156 (193)
T cd04118 81 YDLTDSSSFERAKF-WVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFH-DVQDFADEIK--AQHFETSSKTGQNVDE 156 (193)
T ss_pred EECCCHHHHHHHHH-HHHHHHhcCCCCCEEEEEEcccccccccccCccCHH-HHHHHHHHcC--CeEEEEeCCCCCCHHH
Confidence 99999999999874 999988776789999999999986431 222222 2344445544 2789999999999999
Q ss_pred HHHHHHHHHhC
Q 008219 171 VFYYAQKAVLH 181 (573)
Q Consensus 171 l~~~i~~~~~~ 181 (573)
+|+.+.+.+..
T Consensus 157 l~~~i~~~~~~ 167 (193)
T cd04118 157 LFQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 98
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.91 E-value=1.5e-23 Score=196.80 Aligned_cols=139 Identities=14% Similarity=0.276 Sum_probs=121.4
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
++|+|+|.+|||||||+++|..+.+...+.++.+..+..+.+.+++....+.+|||+|+++|.++ +..++++||++++
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l--~~~y~~~ad~iIl 78 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI--TSAYYRSAKGIIL 78 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHH--HHHHhcCCCEEEE
Confidence 36999999999999999999999998888888888887788888866778999999999999999 8899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHc-CCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFL-VMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~-~~~~~ 572 (573)
|||+++++||+.+..|+..+...... ++|++|||||+|+...+ +...+++++++++ ++.||
T Consensus 79 VfDvtd~~Sf~~l~~w~~~i~~~~~~---~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~ 141 (202)
T cd04120 79 VYDITKKETFDDLPKWMKMIDKYASE---DAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFC 141 (202)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEE
Confidence 99999999999999999887665432 79999999999997544 5677888899885 67665
No 99
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6e-24 Score=177.18 Aligned_cols=160 Identities=24% Similarity=0.312 Sum_probs=130.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
-+||+++|+.|||||+|++++..+-|.+....+.+..- +.+++.++.++++||||+|++++.+....+++.|+++++|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 48999999999999999999999888777655555433 5677889999999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
||++...+|+-+.+ |+.+++.+. .++--|+||||+|+.+. +++..... +.+.+.. ..-++++||+...|++.||
T Consensus 87 ydiscqpsfdclpe-wlreie~yan~kvlkilvgnk~d~~dr-revp~qig-eefs~~q--dmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 87 YDISCQPSFDCLPE-WLREIEQYANNKVLKILVGNKIDLADR-REVPQQIG-EEFSEAQ--DMYFLETSAKEADNVEKLF 161 (213)
T ss_pred EecccCcchhhhHH-HHHHHHHHhhcceEEEeeccccchhhh-hhhhHHHH-HHHHHhh--hhhhhhhcccchhhHHHHH
Confidence 99999999999996 999999875 35566899999999876 44443322 2222221 1257899999999999999
Q ss_pred HHHHHHHh
Q 008219 173 YYAQKAVL 180 (573)
Q Consensus 173 ~~i~~~~~ 180 (573)
..+.-.+.
T Consensus 162 ~~~a~rli 169 (213)
T KOG0095|consen 162 LDLACRLI 169 (213)
T ss_pred HHHHHHHH
Confidence 98876543
No 100
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.91 E-value=3e-24 Score=181.98 Aligned_cols=141 Identities=21% Similarity=0.271 Sum_probs=125.9
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcC-CCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
.++++|||++-||||||++.|..+++..-++||.+.++....+.+. |...++++|||+|+++|+++ ++.||+++=++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsi--tksyyrnsvgv 85 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSI--TKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHH--HHHHhhcccce
Confidence 4799999999999999999999999999999999998887766665 44569999999999999999 99999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCC-CCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGE-DTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||+++++||+.+..|+.+...+.. +. ++-+.+||+|+||...+ +..++++++|+.+|+.|+
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~--k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FV 151 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPD--KVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFV 151 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCC--eeEEEEeccccchhhhccccHHHHHHHHHhcCceEE
Confidence 999999999999999999988666543 33 66678899999999877 778999999999999886
No 101
>PLN03110 Rab GTPase; Provisional
Probab=99.91 E-value=3.9e-23 Score=197.17 Aligned_cols=163 Identities=23% Similarity=0.300 Sum_probs=131.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
...+||+++|++|||||||+++|++..+...+.++.+... ..+.+....+.+.||||+|++.+......+++.++++|
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 3568999999999999999999999888766544443322 34455566789999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
+|||++++.+++.+.. |+..++... .+.|+++|+||+|+... +.+..++ ...+...++ .+++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~-~~~~~~~~~~~~~piiiv~nK~Dl~~~-~~~~~~~-~~~l~~~~~--~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQR-WLRELRDHADSNIVIMMAGNKSDLNHL-RSVAEED-GQALAEKEG--LSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHH-HHHHHHHhCCCCCeEEEEEEChhcccc-cCCCHHH-HHHHHHHcC--CEEEEEeCCCCCCHHH
Confidence 9999999999999875 998887754 47999999999998764 3343333 344555544 3899999999999999
Q ss_pred HHHHHHHHHhC
Q 008219 171 VFYYAQKAVLH 181 (573)
Q Consensus 171 l~~~i~~~~~~ 181 (573)
+|+.+.+.+..
T Consensus 165 lf~~l~~~i~~ 175 (216)
T PLN03110 165 AFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999887644
No 102
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=3.9e-23 Score=196.31 Aligned_cols=160 Identities=24% Similarity=0.310 Sum_probs=127.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccc-cCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDF-YPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
.+||+|+|++|||||||+++|+++.+...+.++.+... ..+.+ ....+.+.+|||+|++.+......+++.+|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999888776554433221 22233 2446789999999999988888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 93 TYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
|||++++.+++++.. |+..+.... ...|++||+||+|+... +.+..++ ...+++.++ .+++++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~-~~v~~~~-~~~~~~~~~--~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQ-RQVTREE-AEKLAKDLG--MKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEccccccc-cccCHHH-HHHHHHHhC--CEEEEEeCCCCCCHHH
Confidence 999999999999985 888876532 35788999999999764 3344443 355666666 3899999999999999
Q ss_pred HHHHHHHHHh
Q 008219 171 VFYYAQKAVL 180 (573)
Q Consensus 171 l~~~i~~~~~ 180 (573)
+|+.+.+.+.
T Consensus 157 ~f~~l~~~~~ 166 (211)
T cd04111 157 AFELLTQEIY 166 (211)
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 103
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.91 E-value=2e-23 Score=190.89 Aligned_cols=157 Identities=30% Similarity=0.406 Sum_probs=123.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeecccccCCceeEEEEeCCCCcc-chhhhHhhhccCCEEEEEEe
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP-PTRLPEDFYPDRVPITIIDTPSSVE-DRGKLGEELRRADAVVLTYA 95 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~il~v~D 95 (573)
||+++|++|||||||+++++.+.+...++++.. .......+++..+.+.+|||||+.. +......+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 699999999999999999999888776655432 2233445556677899999999885 34556788999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCC-CchhH
Q 008219 96 CDRPETLDELSTFWLPELRRL---EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI-QVPEV 171 (573)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l 171 (573)
++++.+++.+.. |+..+... ..++|+++|+||+|+... +.+..++ ...+...++ .++++|||++|. |++++
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~v~~~~-~~~~~~~~~--~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHY-RQVSTEE-GEKLASELG--CLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHh-CccCHHH-HHHHHHHcC--CEEEEeCCCCCchhHHHH
Confidence 999999999875 88887764 348999999999998654 3344433 345556665 389999999995 99999
Q ss_pred HHHHHHHH
Q 008219 172 FYYAQKAV 179 (573)
Q Consensus 172 ~~~i~~~~ 179 (573)
|..+.+.+
T Consensus 156 f~~l~~~~ 163 (165)
T cd04146 156 FHELCREV 163 (165)
T ss_pred HHHHHHHH
Confidence 99998754
No 104
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.91 E-value=1.8e-23 Score=193.37 Aligned_cols=140 Identities=17% Similarity=0.222 Sum_probs=121.6
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
+..+||+++|++|||||||+++|+.+.+...+.|+.+..+. ..+..++....+.+|||+|++.|..+ +..+++++|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~--~~~~~~~ad~ 79 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDA 79 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhh--hhhhcCCCCE
Confidence 34689999999999999999999999998888888876554 45667766778999999999999998 8889999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-c
Q 008219 506 AVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-V 570 (573)
Q Consensus 506 vilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~ 570 (573)
+++|||++++.||+.+ ..|+..+....+ +.|++|||||+||... .+..++++++|+++++ +
T Consensus 80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~~~----~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 155 (182)
T cd04172 80 VLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT 155 (182)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC----CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCE
Confidence 9999999999999997 789998877653 7999999999999641 2668899999999995 7
Q ss_pred cC
Q 008219 571 LY 572 (573)
Q Consensus 571 ~~ 572 (573)
||
T Consensus 156 ~~ 157 (182)
T cd04172 156 YI 157 (182)
T ss_pred EE
Confidence 76
No 105
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.90 E-value=6.5e-23 Score=187.06 Aligned_cols=159 Identities=25% Similarity=0.330 Sum_probs=127.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
++||+++|++|||||||+++|+++.+.....++.+.. .....+....+.+.+|||||++.+......+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999998876444433322 24455667778999999999988888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
+|++++.++..... |+..+.... ++.|+++|+||+|+... +.....+ ...+....+ .+++++||++|.|+.+++
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~-~~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 81 YDITSEESFEKAKS-WVKELQRNASPNIIIALVGNKADLESK-RQVSTEE-AQEYADENG--LLFFETSAKTGENVNELF 155 (163)
T ss_pred EECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc-CcCCHHH-HHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence 99999999998885 888887654 67999999999998754 3333333 334455554 379999999999999999
Q ss_pred HHHHHHH
Q 008219 173 YYAQKAV 179 (573)
Q Consensus 173 ~~i~~~~ 179 (573)
+++.+.+
T Consensus 156 ~~l~~~l 162 (163)
T cd01860 156 TEIAKKL 162 (163)
T ss_pred HHHHHHh
Confidence 9998764
No 106
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.90 E-value=3.6e-23 Score=190.33 Aligned_cols=160 Identities=28% Similarity=0.470 Sum_probs=126.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEe
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPV-LPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D 95 (573)
+||+++|++|||||||+++|++..+...+.++ ...........+..+.+.+|||||++.+.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999999875443332 22233444555667889999999999887777788899999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc---------ccHHHHHHHHHHHhcccCeEEEecCCCCC
Q 008219 96 CDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ---------VSLEQVMMPIMQQFREIETCIECSALKQI 166 (573)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (573)
++++.++......|+..+.....++|+++|+||+|+...... ....+....+...++.. +++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAI-GYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCe-EEEEeecCCCC
Confidence 999999999888899988887678999999999998765211 11123334455555533 89999999999
Q ss_pred CchhHHHHHHH
Q 008219 167 QVPEVFYYAQK 177 (573)
Q Consensus 167 gi~~l~~~i~~ 177 (573)
|++++++.+++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999998875
No 107
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.90 E-value=5.1e-23 Score=189.22 Aligned_cols=159 Identities=23% Similarity=0.353 Sum_probs=125.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eecccccCCceeEEEEeCCCCccch-hhhHhhhccCCEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYPDRVPITIIDTPSSVEDR-GKLGEELRRADAVVL 92 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad~il~ 92 (573)
.+||+++|++|||||||+++++.+.+...+.++.+.. .....+.+..+.+.+|||+|++.+. .....+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999988766544433321 2334455667899999999998776 467788999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCC---CCC
Q 008219 93 TYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK---QIQ 167 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~g 167 (573)
|||++++.++..+.. |...+.... .++|+++|+||+|+... +.+..++ ...+..... .++++|||++ +.|
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-~~~~~~~-~~~~~~~~~--~~~~e~Sa~~~~~~~~ 156 (170)
T cd04115 82 VYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQ-IQVPTDL-AQRFADAHS--MPLFETSAKDPSENDH 156 (170)
T ss_pred EEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhh-cCCCHHH-HHHHHHHcC--CcEEEEeccCCcCCCC
Confidence 999999999999985 998887643 57999999999998765 3344333 344455543 3899999999 899
Q ss_pred chhHHHHHHHHH
Q 008219 168 VPEVFYYAQKAV 179 (573)
Q Consensus 168 i~~l~~~i~~~~ 179 (573)
++++|..+.+.+
T Consensus 157 i~~~f~~l~~~~ 168 (170)
T cd04115 157 VEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 108
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.90 E-value=5.9e-23 Score=190.33 Aligned_cols=157 Identities=12% Similarity=0.120 Sum_probs=119.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
++.+||+++|++|||||||++++..+.+....| +.+.... .+...++.+.+|||||++.+...+..+++++|++|+|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~p-t~g~~~~--~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVE--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccC-CcceeEE--EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 567999999999999999999999877764333 3333222 2345678999999999999988999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc------CeEEEecCCCCC
Q 008219 94 YACDRPETLDELSTFWLPELRR-LEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI------ETCIECSALKQI 166 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~-~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~ 166 (573)
||++++.++......+...+.. ..+++|++||+||+|+... ...++ +...++.. ..+++|||++|+
T Consensus 92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~---~~~~~----~~~~l~l~~~~~~~~~~~~~Sa~~g~ 164 (181)
T PLN00223 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNAAE----ITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC---CCHHH----HHHHhCccccCCCceEEEeccCCCCC
Confidence 9999999998887644444432 2257999999999998765 22222 22222211 135689999999
Q ss_pred CchhHHHHHHHHHh
Q 008219 167 QVPEVFYYAQKAVL 180 (573)
Q Consensus 167 gi~~l~~~i~~~~~ 180 (573)
|+.++|+++.+.+.
T Consensus 165 gv~e~~~~l~~~~~ 178 (181)
T PLN00223 165 GLYEGLDWLSNNIA 178 (181)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987654
No 109
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=3.6e-23 Score=191.04 Aligned_cols=137 Identities=16% Similarity=0.226 Sum_probs=119.1
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||+++|+++.+...+.++.+..+. ..+.+++....+.+|||+|++.|..+ ...+++++|++++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~--~~~~~~~a~~~il 78 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNV--RPLCYPDSDAVLI 78 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhc--chhhcCCCCEEEE
Confidence 69999999999999999999999998888888776554 45667766778999999999999988 8889999999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-ccC
Q 008219 509 VHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-VLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~~~ 572 (573)
|||++++.||+.+ ..|+..+....+ +.|++|||||+||... .+..++++++|+++++ +||
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~~~----~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~ 153 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEFCP----NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYL 153 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHHCC----CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEE
Confidence 9999999999996 789998887654 7999999999999641 2668899999999997 565
No 110
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.90 E-value=3.1e-23 Score=190.63 Aligned_cols=137 Identities=19% Similarity=0.321 Sum_probs=118.9
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|.+|||||||+.+|+.+.+...+.+|.+..+. ..+..++...++.||||+|+++|..+ ...+++++|++++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~--~~~~~~~a~~~il 78 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRL--RPLSYRGADVFVL 78 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCcccccc--chhhcCCCcEEEE
Confidence 69999999999999999999999998888888876554 44666766778999999999999998 8889999999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-----------cchhhHHHHHHHcCC-ccC
Q 008219 509 VHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-----------MAIQDSTRVFTFLVM-VLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~ 572 (573)
|||++++.||+.+ ..|+..+....+ ++|++|||||+||.+.+ +..++++++++++++ +||
T Consensus 79 vyd~~~~~Sf~~~~~~w~~~i~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 151 (176)
T cd04133 79 AFSLISRASYENVLKKWVPELRHYAP----NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYI 151 (176)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEE
Confidence 9999999999998 689998876543 79999999999996542 567899999999997 465
No 111
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.90 E-value=8e-23 Score=188.67 Aligned_cols=159 Identities=12% Similarity=0.105 Sum_probs=116.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
++.+||+++|++|||||||++++..+.+....| +.+.... .+....+.+.+|||||++.+...+..+++.+|++|+|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~-t~~~~~~--~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIP-TIGFNVE--TVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCC-ccccceE--EEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 457999999999999999999998777654333 2222222 2234578899999999999988899999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHH-h-cccCeEEEecCCCCCCchh
Q 008219 94 YACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQ-F-REIETCIECSALKQIQVPE 170 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~Sa~~~~gi~~ 170 (573)
||++++.+++...+.|...++.. .+++|++||+||+|+... ...++....+... . .....++++||++|.|+++
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA---MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC---CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 99999999998887444444432 257999999999998754 1222211111000 0 0111467899999999999
Q ss_pred HHHHHHHH
Q 008219 171 VFYYAQKA 178 (573)
Q Consensus 171 l~~~i~~~ 178 (573)
+|+++.+.
T Consensus 165 ~~~~l~~~ 172 (175)
T smart00177 165 GLTWLSNN 172 (175)
T ss_pred HHHHHHHH
Confidence 99998765
No 112
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.90 E-value=9.3e-23 Score=185.66 Aligned_cols=156 Identities=26% Similarity=0.376 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+||+++|++|||||||+++|.+..+.....++.+... ....+....+.+.+|||||++.+......+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 6899999999999999999999887665554444332 23344555688999999999988888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 95 ACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
|++++.+++.+.. |++.+.... .+.|+++|+||+|+... ....++ ...+....+ .+++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~~~--~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~gi~~~~ 154 (161)
T cd01863 81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKENR--EVTREE-GLKFARKHN--MLFIETSAKTRDGVQQAF 154 (161)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccccc--ccCHHH-HHHHHHHcC--CEEEEEecCCCCCHHHHH
Confidence 9999999999886 988887653 57999999999999743 233333 334444443 389999999999999999
Q ss_pred HHHHHH
Q 008219 173 YYAQKA 178 (573)
Q Consensus 173 ~~i~~~ 178 (573)
+.+.+.
T Consensus 155 ~~~~~~ 160 (161)
T cd01863 155 EELVEK 160 (161)
T ss_pred HHHHHh
Confidence 998764
No 113
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.90 E-value=7.5e-23 Score=185.79 Aligned_cols=155 Identities=13% Similarity=0.111 Sum_probs=114.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeC
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~ 96 (573)
+||+++|.+|||||||++++..+.+....| +.+.... .+....+.+.+|||||++.+...+..+++.+|++|+|||+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~p-t~g~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~ 77 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVE--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCC-CCCcceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 589999999999999999998877764333 3332221 2334578899999999998888889999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHH-Hh-cccCeEEEecCCCCCCchhHHH
Q 008219 97 DRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ-QF-REIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
+++.+++...+.|...++.. ..++|++||+||+|+... ...++....+.. .+ .....+++|||++|.|++++|+
T Consensus 78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 78 NDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred CCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence 99999998886444444332 246899999999999654 222222222211 01 1111578999999999999999
Q ss_pred HHHH
Q 008219 174 YAQK 177 (573)
Q Consensus 174 ~i~~ 177 (573)
++.+
T Consensus 155 ~l~~ 158 (159)
T cd04150 155 WLSN 158 (159)
T ss_pred HHhc
Confidence 8854
No 114
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=5.1e-23 Score=196.33 Aligned_cols=139 Identities=15% Similarity=0.218 Sum_probs=120.8
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+++|++|||||||+++|+++.+...+.++.+..+.. .+..++....+.||||+|++.|..+ ...++++||++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~--~~~~~~~ad~v 88 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNV--RPLCYSDSDAV 88 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHH--HHHHcCCCcEE
Confidence 35799999999999999999999999998888888776653 4667767789999999999999998 88899999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc-------------cccchhhHHHHHHHcCC-cc
Q 008219 507 VFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDS-------------FAMAIQDSTRVFTFLVM-VL 571 (573)
Q Consensus 507 ilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~-~~ 571 (573)
++|||++++.||+.+ ..|+..+....+ +.|+||||||+||.. ..+..++++++|+++++ .|
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~----~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~ 164 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYCP----STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY 164 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence 999999999999985 789998887653 789999999999964 23668899999999998 46
Q ss_pred C
Q 008219 572 Y 572 (573)
Q Consensus 572 ~ 572 (573)
|
T Consensus 165 ~ 165 (232)
T cd04174 165 L 165 (232)
T ss_pred E
Confidence 5
No 115
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.90 E-value=8.6e-23 Score=185.85 Aligned_cols=157 Identities=24% Similarity=0.331 Sum_probs=122.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+||+++|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999888766444333222 23334445578999999999999888899999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
|++++.+++.+.. |+..+.... .+.|+++|+||+|+... +....++ ........+ .+++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~D~~~~-~~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDK-WIDDVRDERGNDVIIVLVGNKTDLSDK-RQVSTEE-GEKKAKELN--AMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEEEChhcccc-CccCHHH-HHHHHHHhC--CEEEEEeCCCCCCHHHHHH
Confidence 9999999999885 888775533 36999999999999643 3333333 334444444 3799999999999999999
Q ss_pred HHHHH
Q 008219 174 YAQKA 178 (573)
Q Consensus 174 ~i~~~ 178 (573)
++.+.
T Consensus 156 ~i~~~ 160 (161)
T cd01861 156 KIASA 160 (161)
T ss_pred HHHHh
Confidence 98764
No 116
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.90 E-value=8.6e-23 Score=190.66 Aligned_cols=164 Identities=27% Similarity=0.428 Sum_probs=128.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+.||+|+|++|||||||++++..+.+...+.++... ......+....+.+.+|||+|++.+.......++.+|++++||
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 369999999999999999999987776554333222 2233344555677899999999888776667889999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc---------ccccHHHHHHHHHHHhcccCeEEEecCCCC
Q 008219 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN---------QQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (573)
|+++.++++.+...|...++...++.|+++|+||+|+.... +.+..+ ....+++.++. .++++|||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQ-QGKRVAKEIGA-KKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHH-HHHHHHHHhCC-cEEEEccCCCC
Confidence 99999999999877999998777789999999999985421 122222 33455666653 27999999999
Q ss_pred CCchhHHHHHHHHHhC
Q 008219 166 IQVPEVFYYAQKAVLH 181 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~~ 181 (573)
.|++++|+.+.+.++.
T Consensus 159 ~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 159 EGVDDVFEAATRAALL 174 (187)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999987643
No 117
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.90 E-value=9.3e-23 Score=186.13 Aligned_cols=159 Identities=28% Similarity=0.386 Sum_probs=126.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+||+++|++|||||||+++|.+..+...+.++.+... ....+....+.+.+|||||++.+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 6999999999999999999998887655443333222 23444455578999999999988888899999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
|++++.+++.+.. |+..+.... +++|+++|+||+|+... +....+. ...+...++ .+++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~-~l~~~~~~~~~~~pivvv~nK~D~~~~-~~~~~~~-~~~~~~~~~--~~~~e~Sa~~~~~i~~l~~ 155 (164)
T smart00175 81 DITNRESFENLKN-WLKELREYADPNVVIMLVGNKSDLEDQ-RQVSREE-AEAFAEEHG--LPFFETSAKTNTNVEEAFE 155 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcccc-cCCCHHH-HHHHHHHcC--CeEEEEeCCCCCCHHHHHH
Confidence 9999999999885 988887654 68999999999998764 2333333 334455554 2799999999999999999
Q ss_pred HHHHHHh
Q 008219 174 YAQKAVL 180 (573)
Q Consensus 174 ~i~~~~~ 180 (573)
.+.+.+.
T Consensus 156 ~i~~~~~ 162 (164)
T smart00175 156 ELAREIL 162 (164)
T ss_pred HHHHHHh
Confidence 9988653
No 118
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=4.6e-23 Score=174.83 Aligned_cols=162 Identities=22% Similarity=0.296 Sum_probs=134.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eccccc-CCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFY-PDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
.-.++++++|++-||||||+..++.++|.+-..++.+..- .-+++. +..+++++|||+|++++.+....+++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 3468999999999999999999999999877666555422 222222 5578899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhc--CCCCc-EEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCC
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRL--EVKVP-VIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~--~~~~p-iilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (573)
++|||++++.||+.+.. |..+...+ +|.++ +.|||+|+|+... |++..+++ +.+++..+- .++|+||++|.|
T Consensus 86 llvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq-RqVt~EEa-EklAa~hgM--~FVETSak~g~N 160 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQ-RQVTAEEA-EKLAASHGM--AFVETSAKNGCN 160 (213)
T ss_pred EEEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhh-ccccHHHH-HHHHHhcCc--eEEEecccCCCc
Confidence 99999999999999996 99887653 25555 4699999999977 77877765 677787774 899999999999
Q ss_pred chhHHHHHHHHHh
Q 008219 168 VPEVFYYAQKAVL 180 (573)
Q Consensus 168 i~~l~~~i~~~~~ 180 (573)
+++.|.-+.+.+.
T Consensus 161 VeEAF~mlaqeIf 173 (213)
T KOG0091|consen 161 VEEAFDMLAQEIF 173 (213)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877654
No 119
>PLN03108 Rab family protein; Provisional
Probab=99.90 E-value=1.3e-22 Score=192.68 Aligned_cols=161 Identities=22% Similarity=0.305 Sum_probs=129.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
..+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||+|++.+......+++.+|++|+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 469999999999999999999999888766554444332 234455556789999999999888888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 93 TYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
|||++++.+++.+.. |+..+... .++.|+++|+||+|+... +.+..++ ...+++.++ .+++++||+++.|++++
T Consensus 85 v~D~~~~~s~~~l~~-~~~~~~~~~~~~~piiiv~nK~Dl~~~-~~~~~~~-~~~~~~~~~--~~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 85 VYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHR-RAVSTEE-GEQFAKEHG--LIFMEASAKTAQNVEEA 159 (210)
T ss_pred EEECCcHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCccc-cCCCHHH-HHHHHHHcC--CEEEEEeCCCCCCHHHH
Confidence 999999999999875 88777654 357999999999999765 3344443 344555554 28999999999999999
Q ss_pred HHHHHHHHh
Q 008219 172 FYYAQKAVL 180 (573)
Q Consensus 172 ~~~i~~~~~ 180 (573)
|.++++.+.
T Consensus 160 f~~l~~~~~ 168 (210)
T PLN03108 160 FIKTAAKIY 168 (210)
T ss_pred HHHHHHHHH
Confidence 999988764
No 120
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.90 E-value=1.8e-22 Score=184.13 Aligned_cols=158 Identities=24% Similarity=0.374 Sum_probs=125.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEe
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D 95 (573)
+||+++|++|||||||+++++...+...+.++... ......++...+.+.+|||||+..+......+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999998887775554333 33444555667889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 96 CDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
++++.++..... |...+... ..++|+++|+||+|+... +..... ....+...++ .+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~-~~~~~~-~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDK-RQVSSE-EAANLARQWG--VPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEccccccc-cccCHH-HHHHHHHHhC--CeEEEeeCCCCCCHHHHHH
Confidence 999999999886 55555443 258999999999999763 122222 2334455554 3899999999999999999
Q ss_pred HHHHHH
Q 008219 174 YAQKAV 179 (573)
Q Consensus 174 ~i~~~~ 179 (573)
.+.+.+
T Consensus 156 ~l~~~~ 161 (164)
T cd04139 156 DLVREI 161 (164)
T ss_pred HHHHHH
Confidence 998754
No 121
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.90 E-value=1.7e-22 Score=185.96 Aligned_cols=161 Identities=24% Similarity=0.334 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+||+++|++|||||||++++.+..+...+.++.+... ....+....+.+.+|||||++.+......+++.+|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999887665544333221 23444556678899999999988888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 95 ACDRPETLDELSTFWLPELRRLE-----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
|++++.+++.... |.+.+.... .++|+++|+||+|+... +....+ ....+....+. .+++++||++|.|++
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~-~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDS-WRDEFLIQASPSDPENFPFVVLGNKIDLEEK-RQVSTK-KAQQWCQSNGN-IPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCccCCCCceEEEEEECcccccc-cccCHH-HHHHHHHHcCC-ceEEEEECCCCCCHH
Confidence 9999999988864 877654432 27999999999999753 223333 33455555553 389999999999999
Q ss_pred hHHHHHHHHHhC
Q 008219 170 EVFYYAQKAVLH 181 (573)
Q Consensus 170 ~l~~~i~~~~~~ 181 (573)
++++.+.+.+..
T Consensus 157 ~l~~~i~~~~~~ 168 (172)
T cd01862 157 QAFETIARKALE 168 (172)
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 122
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.89 E-value=1.5e-22 Score=185.41 Aligned_cols=140 Identities=15% Similarity=0.291 Sum_probs=121.3
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.+||+++|++|||||||+++|.++.+...+.++.+.++....+...+....+.+|||+|++.+..+ +..+++++|+++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~i 79 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAV--TRSYYRGAAGAL 79 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhcCCCEEE
Confidence 379999999999999999999999988877777777777666777766678899999999999988 788899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+|||++++.||+.+..|+..+...... +.|+++|+||+|+...+ ...+++.+++++.++++|
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd04122 80 MVYDITRRSTYNHLSSWLTDARNLTNP---NTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFL 142 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEE
Confidence 999999999999999999887665432 78999999999997655 457888999999888775
No 123
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.89 E-value=1.8e-22 Score=187.35 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=118.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
++.+||+++|++|||||||++++..+.+....| +.+.... .+...++.+.+|||||++.+...+..+++.+|++|+|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~-T~~~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIP-TIGFNVE--TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCC-ccccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 457999999999999999999998777765333 3332222 2344678999999999998888899999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHH-hcc-cCeEEEecCCCCCCchh
Q 008219 94 YACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQ-FRE-IETCIECSALKQIQVPE 170 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~Sa~~~~gi~~ 170 (573)
||++++.++......|.+.+... ..++|++||+||+|+... ...++....+... +.. ...++++||++|.|+++
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA---MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC---CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 99999999998876455444431 247899999999998654 2222221111111 100 01467999999999999
Q ss_pred HHHHHHHHHh
Q 008219 171 VFYYAQKAVL 180 (573)
Q Consensus 171 l~~~i~~~~~ 180 (573)
+|+++.+.+.
T Consensus 169 ~~~~l~~~i~ 178 (182)
T PTZ00133 169 GLDWLSANIK 178 (182)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 124
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.89 E-value=1.4e-23 Score=176.81 Aligned_cols=141 Identities=17% Similarity=0.207 Sum_probs=127.9
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+|++++|...||||||+-+++.++|....-.|....+..+.+.+.+....+.||||+|+++|..+ .+-||++++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHAL--GPIYYRgSnGa 89 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHAL--GPIYYRGSNGA 89 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhcc--CceEEeCCCce
Confidence 4589999999999999999999999998877777777777788888866678899999999999999 99999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++|++||+.+..|..++...... .+.++|||||+||++.+ +..++++.+|+..|..|+
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGn---ei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~ 153 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGN---EIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYM 153 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCC---eeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhhe
Confidence 9999999999999999999999998765 68899999999999887 778999999999998775
No 125
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.89 E-value=3.2e-22 Score=182.07 Aligned_cols=158 Identities=21% Similarity=0.334 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+||+++|++|||||||+++|++..+.....++..... ....+....+.+.+|||||++.+......+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999887665443332222 23333455678999999999888888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
|++++.+++.+.. |.+.++... .++|+++|+||+|+... +....+ ....+...++ .+++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~D~~~~-~~~~~~-~~~~~~~~~~--~~~~~~s~~~~~gi~~~~~ 155 (162)
T cd04123 81 DITDADSFQKVKK-WIKELKQMRGNNISLVIVGNKIDLERQ-RVVSKS-EAEEYAKSVG--AKHFETSAKTGKGIEELFL 155 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc-cCCCHH-HHHHHHHHcC--CEEEEEeCCCCCCHHHHHH
Confidence 9999999998875 888887654 37899999999998854 333333 2333444444 3789999999999999999
Q ss_pred HHHHHH
Q 008219 174 YAQKAV 179 (573)
Q Consensus 174 ~i~~~~ 179 (573)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04123 156 SLAKRM 161 (162)
T ss_pred HHHHHh
Confidence 998754
No 126
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.89 E-value=2.2e-22 Score=184.77 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=116.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD 97 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~ 97 (573)
||+++|++|||||||+++|.+..+.. +.++.+... ..+...++.+.+|||||+..+...+..+++.+|++++|+|++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~--~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s 77 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNV--ETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS 77 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeE--EEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC
Confidence 68999999999999999999887654 333222111 134456789999999999988888889999999999999999
Q ss_pred CcccHHHHHHHHHHHHHh-c-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHh----cccCeEEEecCCCCCCchhH
Q 008219 98 RPETLDELSTFWLPELRR-L-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF----REIETCIECSALKQIQVPEV 171 (573)
Q Consensus 98 ~~~s~~~~~~~~~~~l~~-~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l 171 (573)
++.++.++.. |+..+.. . ..+.|++||+||+|+... +..++.. .+.... +....+++|||++|.||+++
T Consensus 78 ~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 78 HRDRVSEAHS-ELAKLLTEKELRDALLLIFANKQDVAGA---LSVEEMT-ELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred cHHHHHHHHH-HHHHHhcChhhCCCCEEEEEeCcCcccC---CCHHHHH-HHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 9999999886 5555533 2 246899999999999653 3333322 222111 11126789999999999999
Q ss_pred HHHHHHHHh
Q 008219 172 FYYAQKAVL 180 (573)
Q Consensus 172 ~~~i~~~~~ 180 (573)
|+++.+.+.
T Consensus 153 f~~l~~~~~ 161 (169)
T cd04158 153 LDWLSRQLV 161 (169)
T ss_pred HHHHHHHHh
Confidence 999988654
No 127
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.89 E-value=1.1e-22 Score=185.76 Aligned_cols=153 Identities=18% Similarity=0.176 Sum_probs=117.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCC
Q 008219 19 IVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDR 98 (573)
Q Consensus 19 I~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~ 98 (573)
|+++|++|||||||+++|.+..+...+.++.+... ..+...++.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence 89999999999999999999887766555444332 3355678899999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccH-H--HHHHHHHHHhcccCeEEEecCCC------CCCch
Q 008219 99 PETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSL-E--QVMMPIMQQFREIETCIECSALK------QIQVP 169 (573)
Q Consensus 99 ~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~Sa~~------~~gi~ 169 (573)
+.++..... |+..+....+++|+++|+||+|+... +.... . .....+..+.+ .++++|||++ ++||.
T Consensus 80 ~~s~~~~~~-~l~~~~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~--~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 80 SERLPLARQ-ELHQLLQHPPDLPLVVLANKQDLPAA-RSVQEIHKELELEPIARGRR--WILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred HHHHHHHHH-HHHHHHhCCCCCcEEEEEeCcCCcCC-CCHHHHHHHhCChhhcCCCc--eEEEEeeecCCCChhHHHHHH
Confidence 999988875 66666544468999999999998765 21111 0 11122222222 2678888888 99999
Q ss_pred hHHHHHHH
Q 008219 170 EVFYYAQK 177 (573)
Q Consensus 170 ~l~~~i~~ 177 (573)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998764
No 128
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.89 E-value=3.8e-22 Score=188.07 Aligned_cols=160 Identities=26% Similarity=0.341 Sum_probs=122.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~ 96 (573)
||+++|++|||||||+++|+++.+...+.++..... ....+....+.+.+|||||+..+......++..+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 699999999999999999999988776655433222 3333444457899999999998888888899999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHH
Q 008219 97 DRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYY 174 (573)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (573)
+++.+++.+.. |...+.... .++|+++|+||+|+....+.+...+........++ .+++++||++|.|++++|++
T Consensus 81 ~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~l~~~ 157 (198)
T cd04147 81 DDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWN--CGFVETSAKDNENVLEVFKE 157 (198)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcC--CcEEEecCCCCCCHHHHHHH
Confidence 99999999875 777665532 47999999999998763233333333222211222 27899999999999999999
Q ss_pred HHHHHh
Q 008219 175 AQKAVL 180 (573)
Q Consensus 175 i~~~~~ 180 (573)
+.+.+.
T Consensus 158 l~~~~~ 163 (198)
T cd04147 158 LLRQAN 163 (198)
T ss_pred HHHHhh
Confidence 998764
No 129
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.89 E-value=1.9e-22 Score=187.31 Aligned_cols=162 Identities=27% Similarity=0.342 Sum_probs=139.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
+.+||+++|.+|||||+|..+++...|...+.++.+. ++....+++..+.+.|+||+|++++..+...+++.+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 5689999999999999999999999999997776654 557888888889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHH-HhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 94 YACDRPETLDELSTFWLPEL-RRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l-~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
|+++++.||+.+.. +...| +... .++|+++||||+|+... +.+..++. ..++..++. +++|+||+.+.+++++
T Consensus 82 ysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~-R~V~~eeg-~~la~~~~~--~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERE-RQVSEEEG-KALARSWGC--AFIETSAKLNYNVDEV 156 (196)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhc-cccCHHHH-HHHHHhcCC--cEEEeeccCCcCHHHH
Confidence 99999999999997 55555 3333 46899999999999987 67777765 455666663 7999999999999999
Q ss_pred HHHHHHHHhC
Q 008219 172 FYYAQKAVLH 181 (573)
Q Consensus 172 ~~~i~~~~~~ 181 (573)
|..+.+.+..
T Consensus 157 F~~L~r~~~~ 166 (196)
T KOG0395|consen 157 FYELVREIRL 166 (196)
T ss_pred HHHHHHHHHh
Confidence 9999997654
No 130
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.89 E-value=3.2e-22 Score=183.38 Aligned_cols=141 Identities=16% Similarity=0.270 Sum_probs=122.8
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+++|++|||||||+++|.++++...+.++.+.++....+...+....+.+|||+|++.+..+ ...+++++|++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--~~~~~~~ad~~ 79 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTI--TTAYYRGAMGI 79 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHH--HHHHhCCCCEE
Confidence 3589999999999999999999999998888888888877777777766678999999999999888 77889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.||+.+..|+..+...... ++|+++||||+|+.+.+ +..+++.++++.++++++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd01867 80 ILVYDITDEKSFENIRNWMRNIEEHASE---DVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFL 143 (167)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHhCCC---CCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999988775432 79999999999998654 456778889998888765
No 131
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.89 E-value=2.4e-22 Score=184.83 Aligned_cols=140 Identities=15% Similarity=0.270 Sum_probs=118.8
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.+||+|+|.+|||||||+++|+++.+...+.++.+..+. ..+..++....+.+|||+|++.+..+ +..+++.+|+++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l--~~~~~~~~d~~i 78 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAM--RDQYMRCGEGFI 78 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHH--hHHHhhcCCEEE
Confidence 379999999999999999999999998777777775554 44666656678899999999999998 888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+|||++++.||+.+..|+..+.+..... ++|+++|+||+|+...+ +..+++++++++++++||
T Consensus 79 lv~d~~~~~Sf~~~~~~~~~i~~~~~~~--~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~ 142 (172)
T cd04141 79 ICYSVTDRHSFQEASEFKKLITRVRLTE--DIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFF 142 (172)
T ss_pred EEEECCchhHHHHHHHHHHHHHHhcCCC--CCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEE
Confidence 9999999999999999887776643222 79999999999997654 567789999999999876
No 132
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.89 E-value=3.7e-22 Score=182.53 Aligned_cols=139 Identities=14% Similarity=0.266 Sum_probs=120.4
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+|+|++|||||||+++|.++++...+.++.+.++....+..++....+.+|||+|++.+..+ +..+++++|++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~--~~~~~~~~~~~l~ 79 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTI--TTAYYRGAMGFIL 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHccCCcEEEE
Confidence 79999999999999999999999998888888887777777766655678899999999999888 8889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.+|+.+..|+..+...... +.|+++|+||+|+...+ +..+++.++++.+++++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYSWD---NAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFF 141 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999988765433 78999999999997654 446778888888888765
No 133
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.88 E-value=4.7e-22 Score=183.33 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=115.8
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
..+..+||+++|++|||||||+++|.+..+. .+.++.+....... .+++.+.+|||||++.+...+..+++.+|+++
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~~~~~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQIKTLE--YEGYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccceEEEE--ECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 3456789999999999999999999987543 33333332222222 34688999999999988888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHh--cCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHh---cccCeEEEecCCCCC
Q 008219 92 LTYACDRPETLDELSTFWLPELRR--LEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF---REIETCIECSALKQI 166 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~--~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~ 166 (573)
+|||++++.++..... |+..+.. ...++|+++|+||+|+... ...++. ....... ....++++|||++|.
T Consensus 87 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 87 WVVDSSDRLRLDDCKR-ELKELLQEERLAGATLLILANKQDLPGA---LSEEEI-REALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcccccC---CCHHHH-HHHhCccccCCCceEEEeccCCCCc
Confidence 9999999999988775 5555432 2258999999999999764 122222 2222111 112379999999999
Q ss_pred CchhHHHHHHH
Q 008219 167 QVPEVFYYAQK 177 (573)
Q Consensus 167 gi~~l~~~i~~ 177 (573)
|++++|+++..
T Consensus 162 gi~~l~~~l~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999998764
No 134
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.88 E-value=3.6e-22 Score=186.90 Aligned_cols=138 Identities=22% Similarity=0.315 Sum_probs=116.6
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.+||+++|++|||||||+++|..+.+...+.++.+..+. ..+..++....+.+|||+|++.|..+ +..+++++|+++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l--~~~~~~~a~~~i 79 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRL--RTLSYPQTNVFI 79 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhh--hhhhccCCCEEE
Confidence 479999999999999999999999998888888876554 34556666778999999999999998 888999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-------------cchhhHHHHHHHcC-CccC
Q 008219 508 FVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-------------MAIQDSTRVFTFLV-MVLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~-~~~~ 572 (573)
+|||++++.||+.+. .|+..+....+ ++|++|||||+||...+ +..++++++|++++ ++||
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~~~----~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 155 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHHCP----NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYL 155 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEE
Confidence 999999999999997 58877765433 79999999999996532 34578899999988 4665
No 135
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.88 E-value=5.9e-22 Score=184.28 Aligned_cols=160 Identities=19% Similarity=0.237 Sum_probs=118.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccc-cCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDF-YPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
..+||+++|++|||||||++++..+.+....|+ .+... ..... ...++.+.+|||||++.+...+..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPT-KGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCc-cccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 368999999999999999999998887655443 22222 22222 235789999999999888888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHH--Hhcc--cCeEEEecCCCC
Q 008219 92 LTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ--QFRE--IETCIECSALKQ 165 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~Sa~~~ 165 (573)
+|+|++++.++..+.. |+..+... ..++|+++|+||+|+... ...++. ..+.. .... ..++++|||++|
T Consensus 81 ~v~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~SA~~~ 155 (183)
T cd04152 81 FVVDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNA---LSVSEV-EKLLALHELSASTPWHVQPACAIIG 155 (183)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCcccc---CCHHHH-HHHhCccccCCCCceEEEEeecccC
Confidence 9999999988888764 66655442 247999999999998653 222221 22111 1111 125889999999
Q ss_pred CCchhHHHHHHHHHh
Q 008219 166 IQVPEVFYYAQKAVL 180 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~ 180 (573)
.|++++++++.+.+.
T Consensus 156 ~gi~~l~~~l~~~l~ 170 (183)
T cd04152 156 EGLQEGLEKLYEMIL 170 (183)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 136
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.88 E-value=5.3e-22 Score=181.68 Aligned_cols=140 Identities=20% Similarity=0.339 Sum_probs=121.7
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.+||+|+|++|||||||+++++++.+...+.++.+.++....+...+....+.+||++|++.+..+ +..+++.+|+++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~ii 79 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAHGII 79 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHH--HHHHhCcCCEEE
Confidence 479999999999999999999999988877788887777777777766678899999999999888 778899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+|||+++++||..+..|+..+...... ++|+++|+||+|+...+ +..+++..+++.++++++
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd01869 80 IVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFL 142 (166)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCC---CCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEE
Confidence 999999999999999999988776422 79999999999997654 456788999999888775
No 137
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.88 E-value=4.9e-22 Score=180.88 Aligned_cols=139 Identities=17% Similarity=0.278 Sum_probs=120.8
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||+++++++.+...+.++.+.++....+...+....+.+||++|++.+..+ ...+++.+|++++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~~~~i~ 78 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI--TKQYYRRAQGIFL 78 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhh--HHHHhcCCcEEEE
Confidence 48999999999999999999999998777788777777677777755678889999999999888 7788999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.||+.+..|+..+...... ++|+++||||+|+...+ +..+++..+++.++++||
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~~---~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 140 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEYAPE---GVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFF 140 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 99999999999999999988765432 79999999999997655 567899999999988875
No 138
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.88 E-value=8.7e-22 Score=182.79 Aligned_cols=142 Identities=11% Similarity=0.175 Sum_probs=120.1
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcC----------CCeEEEEEEecCChhHHHhhhcc
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP----------GGTKKTVVLREIPEEAVAKLLSN 496 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~dt~G~~~~~~~~~~ 496 (573)
..+||+++|++|||||||+++|.++.+...+.++.+.++....+... +....+.+|||+|++.+..+ +
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~ 80 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSL--T 80 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHH--H
Confidence 45899999999999999999999999988887887766665555443 24568889999999999988 8
Q ss_pred ccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 497 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 497 ~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
..+++++|++++|||+++++||..+..|+..+....... +.|+++|+||+|+...+ +..+++.+++++++++++
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 155 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCE--NPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYF 155 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEE
Confidence 889999999999999999999999999999887654322 78999999999997654 556788999999998775
No 139
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.88 E-value=7.3e-22 Score=179.22 Aligned_cols=154 Identities=13% Similarity=0.128 Sum_probs=112.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD 97 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~ 97 (573)
||+++|++|||||||+++|..+.+....|+ .+.... .+...++.+.+|||||+..+...+..+++.+|++++|+|++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~ 77 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPT-IGFNVE--TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST 77 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCc-cCcCeE--EEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC
Confidence 689999999999999999988776543332 222222 23345788999999999988888899999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHH-hcc-cCeEEEecCCCCCCchhHHHH
Q 008219 98 RPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQ-FRE-IETCIECSALKQIQVPEVFYY 174 (573)
Q Consensus 98 ~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~Sa~~~~gi~~l~~~ 174 (573)
++.++......|...++.. ..++|+++|+||+|+.+. ....+....+... ... ..++++|||++|.|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 154 (158)
T cd04151 78 DRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA---LSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDW 154 (158)
T ss_pred CHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC---CCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHH
Confidence 9888877666555555432 247999999999998754 1122211111111 110 126999999999999999999
Q ss_pred HHH
Q 008219 175 AQK 177 (573)
Q Consensus 175 i~~ 177 (573)
+.+
T Consensus 155 l~~ 157 (158)
T cd04151 155 LVN 157 (158)
T ss_pred Hhc
Confidence 864
No 140
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.88 E-value=3.8e-22 Score=181.71 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=112.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~ 96 (573)
+|+++|++|||||||+++|.+..+ ...+.++.+.... .+...++.+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~ 78 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDS 78 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeC
Confidence 589999999999999999998753 4444444433222 2345678899999999999988999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCcccccHHHHHHHHH-HHhc-ccCeEEEecCCCCCCchh
Q 008219 97 DRPETLDELSTFWLPELRRL----EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIM-QQFR-EIETCIECSALKQIQVPE 170 (573)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~----~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~Sa~~~~gi~~ 170 (573)
+++.++..... |+..+... ..++|+++|+||+|+.... ...+....+. .... ...++++|||++|.|+++
T Consensus 79 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 79 SDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDAL---TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred CcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCCC---CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 99998887764 66555332 2479999999999987641 1111111110 0101 112589999999999999
Q ss_pred HHHHHHH
Q 008219 171 VFYYAQK 177 (573)
Q Consensus 171 l~~~i~~ 177 (573)
+|+++.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9998854
No 141
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.88 E-value=7e-22 Score=182.30 Aligned_cols=157 Identities=15% Similarity=0.186 Sum_probs=116.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+.+||+++|++|||||||+++++.+.+....++ .+.... .+...++.+.+|||||++.+...+..+++.+|++++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPT-IGSNVE--EIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCc-cccceE--EEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 468999999999999999999998887654433 222222 33345789999999999988888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHH-hc-ccCeEEEecCCCCCCchhH
Q 008219 95 ACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQ-FR-EIETCIECSALKQIQVPEV 171 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~Sa~~~~gi~~l 171 (573)
|++++.++......|...++.. ..++|+++|+||+|+... ...++....+... .. ...++++|||++|.|++++
T Consensus 91 D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 91 DSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA---MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence 9999998888776455554432 247999999999998753 2222222222100 00 0126899999999999999
Q ss_pred HHHHHH
Q 008219 172 FYYAQK 177 (573)
Q Consensus 172 ~~~i~~ 177 (573)
|+++.+
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999864
No 142
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.88 E-value=8.9e-22 Score=180.71 Aligned_cols=139 Identities=19% Similarity=0.263 Sum_probs=118.8
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 509 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv 509 (573)
||+++|++|||||||+++|+++.+...+.++.+..+..+.+...+....+.+|||+|+++|..+ +..+++++|++++|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI--ASTYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh--HHHHhcCCCEEEEE
Confidence 7999999999999999999999998888888887777677777766678999999999999988 88899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc---chhhHHHHHHHcCCccC
Q 008219 510 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM---AIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 510 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~ 572 (573)
||++++.||..+..|+..+....... ..|+++|+||+|+.+.+. ..+++..++++++++||
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (170)
T cd04108 80 FDLTDVASLEHTRQWLEDALKENDPS--SVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYW 143 (170)
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCC--CCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEE
Confidence 99999999999999999886654332 578999999999965432 35667788888888765
No 143
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=6.8e-22 Score=186.82 Aligned_cols=142 Identities=18% Similarity=0.254 Sum_probs=119.9
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcC-CCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
+||+|+|++|||||||+++|+++.+...+.++.+.++....+..+ +....+.+|||+|++.+..+ +..+++++|+++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~a~~~i 78 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM--TRVYYRGAVGAI 78 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhh--HHHHhCCCCEEE
Confidence 489999999999999999999999888888888877777777776 56778899999999999988 888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCC-CCCCCcEEEEEeCCCCccc-ccchhhHHHHHHHcC-CccC
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGED-TGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLV-MVLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~-~~~~ 572 (573)
+|||++++.||+.+..|+..+...... ...++|++|||||+|+... .+..+++.++++.++ .++|
T Consensus 79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (201)
T cd04107 79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWF 146 (201)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEE
Confidence 999999999999999999887653210 0127999999999999743 356788899999988 4554
No 144
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.88 E-value=6.8e-22 Score=183.31 Aligned_cols=138 Identities=13% Similarity=0.200 Sum_probs=117.2
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|.+|||||||+++|+++.+...+.++.+.++..+.+..++....+.+|||+|++.|..+ +..+++++|++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~--~~~~~~~a~~iil 78 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINM--LPLVCNDAVAILF 78 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHh--hHHHCcCCCEEEE
Confidence 48999999999999999999999998888888888777777888766678999999999999988 7789999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc------ccchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF------AMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.||+.+..|+..+....+. ..| ++||||+|+... +...++++++++.+++++|
T Consensus 79 v~D~t~~~s~~~i~~~~~~~~~~~~~---~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 144 (182)
T cd04128 79 MFDLTRKSTLNSIKEWYRQARGFNKT---AIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLI 144 (182)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEE
Confidence 99999999999999999988775432 567 688999999521 1235677889999887765
No 145
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.88 E-value=8.7e-22 Score=186.96 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=116.9
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+|||++|||||||+++|.++.+...+.|+.+..+. ..+.+++....+.+|||+|++.|..+ +..+++.+|++++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l--~~~~~~~~d~ill 78 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNV--RPLAYPDSDAVLI 78 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHH--hHHhccCCCEEEE
Confidence 69999999999999999999999999888888877665 45666766778899999999999998 8889999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-ccC
Q 008219 509 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-VLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~~~ 572 (573)
|||+++++||+.+. .|...+....+ ++|++|||||+||... .+..++++.+++++++ +||
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~~~~~----~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~ 153 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQEFCP----NAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYV 153 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEE
Confidence 99999999999994 67766655443 8999999999999642 2457789999999995 675
No 146
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.88 E-value=9.9e-22 Score=179.67 Aligned_cols=140 Identities=17% Similarity=0.260 Sum_probs=121.5
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.+||+++|++|||||||+++|.++.+...+.++.+.++....+..++....+.+||++|++.+..+ ...+++.+++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i 80 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAI--TSAYYRGAVGAL 80 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHH--HHHHHCCCCEEE
Confidence 479999999999999999999999988888888888887777877755668899999999999888 778899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ ...++.+.+++..+++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFI 143 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECccccccccCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999988776542 69999999999997654 456778888888887765
No 147
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.88 E-value=4e-21 Score=183.61 Aligned_cols=165 Identities=16% Similarity=0.281 Sum_probs=130.7
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCC
Q 008219 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (573)
Q Consensus 11 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 88 (573)
......+||+++|++|||||||+++++.+.+...+.++.+... .......+.+.+.+|||+|++.+......+++.++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 3456679999999999999999999988887766655554433 23333567789999999999988888888999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCc
Q 008219 89 AVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (573)
Q Consensus 89 ~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (573)
++++|||++++.++..+.. |+..+.....+.|+++|+||+|+... ....+. ..+....+ ..++++||++|.|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~i~lv~nK~Dl~~~--~~~~~~--~~~~~~~~--~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPN-WHRDIVRVCENIPIVLVGNKVDVKDR--QVKARQ--ITFHRKKN--LQYYDISAKSNYNF 156 (215)
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECccCccc--cCCHHH--HHHHHHcC--CEEEEEeCCCCCCH
Confidence 9999999999999999884 98888776678999999999998653 122221 22333333 27999999999999
Q ss_pred hhHHHHHHHHHhCC
Q 008219 169 PEVFYYAQKAVLHP 182 (573)
Q Consensus 169 ~~l~~~i~~~~~~~ 182 (573)
+++|.++.+.+...
T Consensus 157 ~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 157 EKPFLWLARRLTND 170 (215)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999887643
No 148
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=1.7e-21 Score=178.77 Aligned_cols=160 Identities=24% Similarity=0.320 Sum_probs=122.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
..+||+++|++|||||||++++.++.+...+.++.+... ....+.+..+.+.+|||||+..+......+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 458999999999999999999998776555433222111 233444556789999999998888888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
|||++++.+++.+.. |+..++... .+.|+++|+||+|+... +.+... ....+..... .++++|||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~~i~v~NK~D~~~~-~~i~~~-~~~~~~~~~~--~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPE-WLREIEQYANNKVITILVGNKIDLAER-REVSQQ-RAEEFSDAQD--MYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc-cccCHH-HHHHHHHHcC--CeEEEeeCCCCCCHHHH
Confidence 999999999988874 988887644 37999999999998754 333322 2233333332 37999999999999999
Q ss_pred HHHHHHHH
Q 008219 172 FYYAQKAV 179 (573)
Q Consensus 172 ~~~i~~~~ 179 (573)
|+.+.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998753
No 149
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.88 E-value=7e-22 Score=180.18 Aligned_cols=139 Identities=19% Similarity=0.276 Sum_probs=115.9
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||+++++++.+...+.++.+. ...+.+..++....+.+|||+|++++..+ +..+++++|++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~il 78 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVDGQQCMLEILDTAGTEQFTAM--RDLYIKNGQGFVL 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCccccchH--HHHHhhcCCEEEE
Confidence 69999999999999999999999888777776653 33455666755668889999999999988 7888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.+|+.+..|+..+....... ++|+++|+||+|+...+ ...+++..+++.+++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRVKDTE--NVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFY 141 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccceecHHHHHHHHHHcCCeEE
Confidence 999999999999999998887654333 79999999999997544 445677888888887765
No 150
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.88 E-value=9.3e-22 Score=180.45 Aligned_cols=139 Identities=43% Similarity=0.640 Sum_probs=117.3
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCC-CCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFS-DNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 503 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~ 503 (573)
+++++||+++|++|||||||+++|+++.+. ..+.+|.+.++....+..++....+.+||++|++.+..+ +..+++++
T Consensus 1 ~~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~~~~~ 78 (169)
T cd01892 1 QRNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL--NDAELAAC 78 (169)
T ss_pred CCeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc--chhhhhcC
Confidence 367899999999999999999999999998 788888888887777877766668889999999988877 77888999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCc
Q 008219 504 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMV 570 (573)
Q Consensus 504 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 570 (573)
|++++|||++++.+|+.+..|+..+.... ++|+++|+||+|+...+ +...+++++++.+++.
T Consensus 79 d~~llv~d~~~~~s~~~~~~~~~~~~~~~-----~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 141 (169)
T cd01892 79 DVACLVYDSSDPKSFSYCAEVYKKYFMLG-----EIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP 141 (169)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHhccCC-----CCeEEEEEEcccccccccccccCHHHHHHHcCCC
Confidence 99999999999999999988887653321 79999999999996543 3345677888888864
No 151
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.87 E-value=1.6e-21 Score=177.12 Aligned_cols=156 Identities=26% Similarity=0.408 Sum_probs=122.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~ 96 (573)
||+|+|++|||||||++++++..+...+.++..... ....+....+.+.+||+||+..+......+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 699999999999999999998887777655444222 3333344468899999999998888888999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHH
Q 008219 97 DRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYY 174 (573)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (573)
++++++.++.. |...+.... .++|+++|+||+|+... +....++ ...+...++ .+++++||++|.|++++++.
T Consensus 81 ~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~-~~~~~~~~~--~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENE-RQVSKEE-GKALAKEWG--CPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCccccc-ceecHHH-HHHHHHHcC--CcEEEeccCCCCCHHHHHHH
Confidence 99999998886 555554433 48999999999999874 3344333 344445554 38999999999999999999
Q ss_pred HHHH
Q 008219 175 AQKA 178 (573)
Q Consensus 175 i~~~ 178 (573)
+.+.
T Consensus 156 l~~~ 159 (160)
T cd00876 156 LVRE 159 (160)
T ss_pred HHhh
Confidence 8764
No 152
>PLN00023 GTP-binding protein; Provisional
Probab=99.87 E-value=1.7e-21 Score=190.33 Aligned_cols=144 Identities=16% Similarity=0.135 Sum_probs=120.4
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCC-------------CeEEEEEEecCChhHHH
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPG-------------GTKKTVVLREIPEEAVA 491 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~dt~G~~~~~ 491 (573)
....+||+|+|..|||||||+++|+++.+...+.+|.+..+.++.+.+.+ ....+.||||+|++.|.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 45568999999999999999999999999888888888777767666542 24578899999999999
Q ss_pred hhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCC---------CCCCCcEEEEEeCCCCcccc-------c
Q 008219 492 KLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGED---------TGFEVPCLIVAAKDDLDSFA-------M 555 (573)
Q Consensus 492 ~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~---------~~~~~p~ilv~nK~Dl~~~~-------~ 555 (573)
.+ +..+++++|++|+|||++++.||+.+..|+..+...... ...++|++|||||+||...+ +
T Consensus 98 sL--~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 98 DC--RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hh--hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 99 889999999999999999999999999999998765310 00158999999999996542 2
Q ss_pred chhhHHHHHHHcCCc
Q 008219 556 AIQDSTRVFTFLVMV 570 (573)
Q Consensus 556 ~~~~~~~~~~~~~~~ 570 (573)
..+++++||+++++.
T Consensus 176 ~~e~a~~~A~~~g~l 190 (334)
T PLN00023 176 LVDAARQWVEKQGLL 190 (334)
T ss_pred cHHHHHHHHHHcCCC
Confidence 478999999998853
No 153
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.87 E-value=1.3e-21 Score=186.86 Aligned_cols=142 Identities=18% Similarity=0.180 Sum_probs=120.8
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCC-CeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPG-GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++ ....+.+|||+|++.+..+ ...+++++|+++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l--~~~~~~~ad~ii 78 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKM--LDKYIYGAHAVF 78 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHH--HHHHhhcCCEEE
Confidence 4899999999999999999999999888888888887777777764 3568899999999998888 788899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+|||+++++||+.+..|+..+.........++|+++|+||+|+...+ +..+++.++++.++++++
T Consensus 79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~ 144 (215)
T cd04109 79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESC 144 (215)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999998877643211167899999999997544 556788899999887765
No 154
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.87 E-value=1.2e-21 Score=179.41 Aligned_cols=142 Identities=15% Similarity=0.198 Sum_probs=121.0
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||+++|+++++...+.++.+.++..+.+...+....+.+|||+|.+.+..+ +..+++++|++++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~il 78 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV--RNEFYKDTQGVLL 78 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHH--HHHHhccCCEEEE
Confidence 48999999999999999999999988888888887777777777767778999999999988887 7888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCC--CCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDT--GFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.+|+.+..|+..+....... ..+.|+++|+||+|+..++ ...++.+.++++.++++|
T Consensus 79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYF 145 (168)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEE
Confidence 999999999999999999987764320 0179999999999997433 457777888888887765
No 155
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.87 E-value=1.3e-21 Score=186.95 Aligned_cols=140 Identities=14% Similarity=0.201 Sum_probs=119.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+++|++|||||||+++++.+.+...+.++.+..+....+..+++...+.+|||+|++.|..+ +..+++++|+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~ 88 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--RDGYYIHGQC 88 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhh--hHHHcccccE
Confidence 55689999999999999999999999988888888877666666666656679999999999999988 8888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
+|+|||++++.||+.+..|+..+..... ++|++|||||+|+....+..++. +++++.+++||
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~~----~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~ 150 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYY 150 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEE
Confidence 9999999999999999999999886643 89999999999997544444444 77888888776
No 156
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.87 E-value=1.7e-21 Score=183.75 Aligned_cols=140 Identities=19% Similarity=0.299 Sum_probs=121.8
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+|+|++|||||||+++|.+..+...+.++.+.++....+...+....+.+||++|++.+..+ +..+++++|++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--~~~~~~~a~~i 82 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTI--TSTYYRGTHGV 82 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHH--HHHHhCCCcEE
Confidence 4689999999999999999999999988777788887777777777765668899999999999888 88899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||+++++||+.+..|+..+..... ..|++|||||+|+...+ +..+++.++++.+++++|
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~~----~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNCD----DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLF 145 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 999999999999999999998876553 79999999999997654 446778889988887765
No 157
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.87 E-value=1.5e-21 Score=177.87 Aligned_cols=138 Identities=17% Similarity=0.282 Sum_probs=118.7
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcC--CCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP--GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.+. +....+.+|||+|++.+..+ +..+++.+|++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~ 78 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAI--TKAYYRGAQAC 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHh--HHHHhcCCCEE
Confidence 489999999999999999999998887777887777665556555 56678999999999999988 78899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||+++++||+.+..|+..+..... ++|+++|+||+|+...+ +..+++.++++.+++++|
T Consensus 79 v~v~d~~~~~s~~~l~~~~~~~~~~~~----~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 141 (162)
T cd04106 79 ILVFSTTDRESFEAIESWKEKVEAECG----DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLF 141 (162)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEE
Confidence 999999999999999999988876543 89999999999997654 456788899999998875
No 158
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.87 E-value=1.9e-21 Score=178.36 Aligned_cols=141 Identities=16% Similarity=0.256 Sum_probs=121.2
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+|+|++|||||||++++++..+...+.++.+.+.....+...+....+.+||++|++.+..+ ...+++.+|++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~i 80 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSI--TRSYYRGAAGA 80 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhccCCEE
Confidence 3589999999999999999999999988887778777777677777766678999999999999888 77888999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.||+.+..|+..+...... ++|+++|+||+|+...+ ...+++..+++++++.+|
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSNS---NMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFM 144 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999988775422 79999999999997543 556778888888888765
No 159
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.87 E-value=2e-21 Score=178.65 Aligned_cols=141 Identities=21% Similarity=0.283 Sum_probs=120.2
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHH-hhhccccccccccEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA-KLLSNKDSLAACDIA 506 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~-~~~~~~~~~~~~d~v 506 (573)
.+||+++|++|||||||+++++++.+...+.++.+.++....+...+....+.+|||+|++.+. .+ ...+++++|++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~d~~ 79 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSM--VQHYYRNVHAV 79 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhh--HHHhhcCCCEE
Confidence 4799999999999999999999998887777777776766777777667789999999998886 45 67788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.||+.+..|+..+....... ++|+++|+||+|+...+ +..++++++++.++++||
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (170)
T cd04115 80 VFVYDVTNMASFHSLPSWIEECEQHSLPN--EVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLF 144 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcCCC--CCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEE
Confidence 99999999999999999998887654333 79999999999997655 456788889999888876
No 160
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.87 E-value=1.3e-21 Score=180.37 Aligned_cols=137 Identities=22% Similarity=0.313 Sum_probs=114.4
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+|+|.+|||||||+++|+++.+...+.|+.+..+.. .+..++....+.+|||+|++.+..+ +..+++++|++++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~a~~~il 78 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRL--RPLSYPQTDVFLV 78 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEECCCccchhhh--hhhhcccCCEEEE
Confidence 799999999999999999999999987888887765543 3556655678899999999999888 7889999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcC-CccC
Q 008219 509 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLV-MVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~-~~~~ 572 (573)
|||++++.||+.+. .|+..+....+ ++|++|||||+|+... .+..+++++++++.+ +.||
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~~~~----~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~ 153 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITHHCP----KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYV 153 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEE
Confidence 99999999999997 58887766543 7999999999998643 244678888998887 5665
No 161
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.87 E-value=3e-21 Score=179.21 Aligned_cols=160 Identities=23% Similarity=0.265 Sum_probs=124.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEe
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP-PTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D 95 (573)
.||+|+|++|||||||++++++..+...+.++.. .......+....+.+.+|||||++++......++..+|++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 5899999999999999999999887765544333 233334444556788999999999888888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHH
Q 008219 96 CDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYY 174 (573)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (573)
+++..+++.+...|...++... .+.|+++|+||+|+... +..... ....+...++ .+++++||++|.|+.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-~~~~~~-~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~ 157 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQ-RQVSTE-EGKELAESWG--AAFLESSARENENVEEAFEL 157 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhc-CccCHH-HHHHHHHHcC--CeEEEEeCCCCCCHHHHHHH
Confidence 9999999999874444444432 47899999999998754 333322 2344555555 38999999999999999999
Q ss_pred HHHHHh
Q 008219 175 AQKAVL 180 (573)
Q Consensus 175 i~~~~~ 180 (573)
+.+.+.
T Consensus 158 l~~~~~ 163 (180)
T cd04137 158 LIEEIE 163 (180)
T ss_pred HHHHHH
Confidence 988764
No 162
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.87 E-value=2e-21 Score=175.84 Aligned_cols=155 Identities=28% Similarity=0.394 Sum_probs=122.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
+||+++|++|||||||++++.+..+...+.++.+... .........+.+.+||+||+..+......+++.+|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999888776444333333 23333345688999999999888888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
|++++.+++.+.. |+..+.... .+.|+++|+||+|+... .....+ ....+....+ .+++++||+++.|++++++
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~-~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~ 155 (159)
T cd00154 81 DITNRESFENLDK-WLKELKEYAPENIPIILVGNKIDLEDQ-RQVSTE-EAQQFAKENG--LLFFETSAKTGENVEELFQ 155 (159)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEccccccc-ccccHH-HHHHHHHHcC--CeEEEEecCCCCCHHHHHH
Confidence 9999999999886 888887765 57999999999999633 223333 3344444433 3899999999999999999
Q ss_pred HHH
Q 008219 174 YAQ 176 (573)
Q Consensus 174 ~i~ 176 (573)
++.
T Consensus 156 ~i~ 158 (159)
T cd00154 156 SLA 158 (159)
T ss_pred HHh
Confidence 875
No 163
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=2.1e-21 Score=184.37 Aligned_cols=141 Identities=20% Similarity=0.257 Sum_probs=121.2
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcC-CCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
.+||+|+|++|||||||+++|+++.+...+.++.+.++..+.+.+. +....+.+|||+|++.+..+ +..+++++|++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~i 79 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSI--TRSYYRNSVGV 79 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHH--HHHHhcCCcEE
Confidence 4799999999999999999999999988888888877777777664 34568899999999999888 78899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.||+.+..|+..+....... ..|++||+||+|+...+ +..+++.++++.++++|+
T Consensus 80 ilv~D~~~~~Sf~~l~~~~~~i~~~~~~~--~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 144 (211)
T cd04111 80 LLVFDITNRESFEHVHDWLEEARSHIQPH--RPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYI 144 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCeEEEEEEccccccccccCHHHHHHHHHHhCCEEE
Confidence 99999999999999999999887654333 68899999999997644 557788999999988775
No 164
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.87 E-value=3.4e-21 Score=177.02 Aligned_cols=145 Identities=13% Similarity=0.206 Sum_probs=121.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+||++|++++..+ +..+++.+|+
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~~d~ 80 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSL--RTPFYRGSDC 80 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHh--HHHHhcCCCE
Confidence 35689999999999999999999999988777777777666667777767778899999999999988 8889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCC-CCCCcEEEEEeCCCCcccccchhhHHHHHHHcCC-ccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDT-GFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM-VLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~ 572 (573)
+++|||++++.||+.+..|+..+....... ..++|+++|+||+|+....+..++++++++++++ ++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T cd04116 81 CLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYF 149 (170)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEE
Confidence 999999999999999999998876643211 1279999999999997545667889999998884 443
No 165
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.87 E-value=4.4e-23 Score=168.72 Aligned_cols=135 Identities=16% Similarity=0.274 Sum_probs=122.8
Q ss_pred EEcCCCCChhHHHHHhhCCCCCCC-CCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEEEe
Q 008219 433 VFGPKKAGKSVLLNSFLGRPFSDN-YTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHD 511 (573)
Q Consensus 433 vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D 511 (573)
++|++++|||+|+-++..+.+-.. ..++.+.++..+.+..++.+.++++|||+|+++|+++ +..||+.+|+.+++||
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsv--t~ayyrda~allllyd 79 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSV--THAYYRDADALLLLYD 79 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhh--hHhhhcccceeeeeee
Confidence 689999999999999988777543 3567888899999999988899999999999999999 9999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 512 SSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 512 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++.||+++..|+.++.++..+ .+.+.++|||+|+..++ +..++.+++++.+++||.
T Consensus 80 iankasfdn~~~wlsei~ey~k~---~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfm 138 (192)
T KOG0083|consen 80 IANKASFDNCQAWLSEIHEYAKE---AVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFM 138 (192)
T ss_pred cccchhHHHHHHHHHHHHHHHHh---hHhHhhhccccccchhhccccchHHHHHHHHCCCce
Confidence 99999999999999999998765 79999999999997766 668999999999999985
No 166
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.87 E-value=1.7e-21 Score=177.97 Aligned_cols=139 Identities=19% Similarity=0.291 Sum_probs=116.0
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|.+|||||||+++++.+.+...+.++.+..+. ..+...+....+.+|||+|++.+..+ +..+++++|++++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~il 78 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAM--RDLYMKNGQGFVL 78 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhH--HHHHHhhCCEEEE
Confidence 69999999999999999999998887777666665443 45666655667889999999999998 8889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.+|+.+..|+..+....... +.|+++|+||+|+...+ ....++++++++++++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFL 141 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEE
Confidence 999999999999999998887653322 89999999999997654 345667889988888775
No 167
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.4e-21 Score=161.48 Aligned_cols=162 Identities=22% Similarity=0.347 Sum_probs=136.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP--TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
--+|.+|+|+-|||||+|+..+...+|..+-|.+.+. .+.-+++.+..++++||||+|++++....+.+++.+-+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 3589999999999999999999999987776655443 22345677889999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 93 TYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
|||++.+.++..+.. |+...+.. +++..+++++||.|+... +.+..++. ..++..-+- .++++||++|.|+++.
T Consensus 90 vyditrrstynhlss-wl~dar~ltnpnt~i~lignkadle~q-rdv~yeea-k~faeengl--~fle~saktg~nveda 164 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLESQ-RDVTYEEA-KEFAEENGL--MFLEASAKTGQNVEDA 164 (215)
T ss_pred EEEehhhhhhhhHHH-HHhhhhccCCCceEEEEecchhhhhhc-ccCcHHHH-HHHHhhcCe--EEEEecccccCcHHHH
Confidence 999999999999986 98888774 478889999999999987 67777765 445555443 6999999999999999
Q ss_pred HHHHHHHHhC
Q 008219 172 FYYAQKAVLH 181 (573)
Q Consensus 172 ~~~i~~~~~~ 181 (573)
|-+..+.++.
T Consensus 165 fle~akkiyq 174 (215)
T KOG0097|consen 165 FLETAKKIYQ 174 (215)
T ss_pred HHHHHHHHHH
Confidence 9888877654
No 168
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=3.7e-21 Score=175.90 Aligned_cols=137 Identities=18% Similarity=0.315 Sum_probs=118.1
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.+||+|+|++|||||||+++|.++.+...+.++.+.+.....+..++....+.+|||+|++.+..+ +..+++.+|+++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~~d~~l 80 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTI--TQSYYRSANGAI 80 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHhccCCEEE
Confidence 589999999999999999999999888877777777777777777755568899999999999888 788899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCC
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVM 569 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~ 569 (573)
+|||++++.||+.+..|+..+...... ++|+++|+||+|+...+ ....++.++++++++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 140 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGAS---NVVLLLIGNKCDLEEQREVLFEEACTLAEKNGM 140 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 999999999999999999988765432 79999999999997654 456778889988775
No 169
>PLN03110 Rab GTPase; Provisional
Probab=99.87 E-value=2.5e-21 Score=184.71 Aligned_cols=142 Identities=17% Similarity=0.248 Sum_probs=124.3
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+++|++|||||||+++|.++.+...+.++.+.++....+..++....+.+|||+|++++..+ +..+++.+++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~~~ 87 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI--TSAYYRGAVG 87 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhCCCCE
Confidence 35689999999999999999999999988778888888887788888766678999999999999988 8889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +..++++.+++.++++++
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 152 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADS---NIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFL 152 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCC---CCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999888776432 79999999999997655 456788899998888776
No 170
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.87 E-value=1.3e-21 Score=177.88 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=112.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD 97 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~ 97 (573)
||+++|++|||||||+++|.+..+....|+ .+.......+ ...+.+.+|||||+..+...+..+++.+|++++|+|++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t-~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~ 78 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPT-VGFNVEMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSS 78 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCc-cCcceEEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC
Confidence 689999999999999999999887655443 2222222222 34678999999999888888888999999999999999
Q ss_pred CcccHHHHHHHHHHHH-Hhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHH-HHhcc--cCeEEEecCCCCCCchhHH
Q 008219 98 RPETLDELSTFWLPEL-RRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIM-QQFRE--IETCIECSALKQIQVPEVF 172 (573)
Q Consensus 98 ~~~s~~~~~~~~~~~l-~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~Sa~~~~gi~~l~ 172 (573)
++.++..... |+..+ +.. ..+.|+++|+||+|+... ...++....+. ..+.. ..++++|||++|.|++++|
T Consensus 79 ~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 79 DEARLDESQK-ELKHILKNEHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred cHHHHHHHHH-HHHHHHhchhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 9988888876 44444 322 148999999999998653 11222211111 11111 1268999999999999999
Q ss_pred HHHHH
Q 008219 173 YYAQK 177 (573)
Q Consensus 173 ~~i~~ 177 (573)
+++.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 98854
No 171
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.87 E-value=2.4e-21 Score=176.24 Aligned_cols=139 Identities=18% Similarity=0.263 Sum_probs=116.6
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||+++|+++++...+.++.+..+ ...+..++....+.+|||+|++.+..+ +..+++++|++++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l--~~~~~~~~~~~i~ 78 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGFLC 78 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHH--HHHHHhcCCEEEE
Confidence 6899999999999999999999998877777766544 344566655567889999999999988 8889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.+|+.+..|+..+....... ++|+++|+||+|+........++.++++.++++++
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~--~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 140 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKDSD--DVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYI 140 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccceecHHHHHHHHHHhCCeEE
Confidence 999999999999999998887654332 79999999999998755567778888888887765
No 172
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.87 E-value=1.5e-21 Score=177.96 Aligned_cols=138 Identities=22% Similarity=0.361 Sum_probs=124.2
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 509 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv 509 (573)
||+|+|+++||||||+++|.++.+...+.++.+.+.....+..++....+.+||++|++.+..+ ....++++|++++|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--~~~~~~~~~~~ii~ 78 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSL--RDIFYRNSDAIIIV 78 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHH--HHHHHTTESEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccc--cccccccccccccc
Confidence 7999999999999999999999999888888877777788888867779999999999988887 77789999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 510 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 510 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
||+++++||+.+..|+..+....+. +.|++|||||.|+...+ +..++++++|++++++|+
T Consensus 79 fd~~~~~S~~~~~~~~~~i~~~~~~---~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~ 139 (162)
T PF00071_consen 79 FDVTDEESFENLKKWLEEIQKYKPE---DIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYF 139 (162)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHSTT---TSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEE
T ss_pred ccccccccccccccccccccccccc---cccceeeeccccccccccchhhHHHHHHHHhCCEEE
Confidence 9999999999999999999888762 69999999999998744 667899999999998876
No 173
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.87 E-value=1.5e-21 Score=178.73 Aligned_cols=156 Identities=17% Similarity=0.271 Sum_probs=115.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD 97 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~ 97 (573)
+|+++|++|||||||+++|.+. +...+.++.+.... .+...++.+.+|||||+..+...+..+++.+|++++|||++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s 77 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS 77 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence 4899999999999999999976 55555555444433 33446789999999999888888899999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHH--HHHHHHHhcccCeEEEecCCCC------CC
Q 008219 98 RPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQV--MMPIMQQFREIETCIECSALKQ------IQ 167 (573)
Q Consensus 98 ~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~------~g 167 (573)
++.+++.... |+..+.... .++|+++|+||+|+..........+. ...+....+....+++|||++| .|
T Consensus 78 ~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g 156 (167)
T cd04161 78 DDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPS 156 (167)
T ss_pred chhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccC
Confidence 9999998875 776665432 47999999999999775211111111 1111111122236788999998 89
Q ss_pred chhHHHHHHH
Q 008219 168 VPEVFYYAQK 177 (573)
Q Consensus 168 i~~l~~~i~~ 177 (573)
+.+.|+|+..
T Consensus 157 ~~~~~~wl~~ 166 (167)
T cd04161 157 IVEGLRWLLA 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 174
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.87 E-value=2.4e-21 Score=181.35 Aligned_cols=141 Identities=16% Similarity=0.042 Sum_probs=114.6
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcC-----CCeEEEEEEecCChhHHHhhhccccccccc
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-----GGTKKTVVLREIPEEAVAKLLSNKDSLAAC 503 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~ 503 (573)
+||+++|++|||||||+++|+++.+...+.+|.+..+..+.+.+. +....+.+|||+|++.|..+ +..+++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l--~~~~yr~a 78 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKST--RAVFYNQV 78 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHH--HHHHhCcC
Confidence 489999999999999999999999988888888776766666553 24568889999999999998 88899999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCC----------------CCCCCCcEEEEEeCCCCcccc-cc----hhhHHH
Q 008219 504 DIAVFVHDSSDESSWKRATELLVEVASYGE----------------DTGFEVPCLIVAAKDDLDSFA-MA----IQDSTR 562 (573)
Q Consensus 504 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~----------------~~~~~~p~ilv~nK~Dl~~~~-~~----~~~~~~ 562 (573)
|++|+|||++++.||+.+..|+.++..... ....++|++|||||+|+.+.+ +. ......
T Consensus 79 d~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ 158 (202)
T cd04102 79 NGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGF 158 (202)
T ss_pred CEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhh
Confidence 999999999999999999999999876321 001279999999999997654 22 234566
Q ss_pred HHHHcCCcc
Q 008219 563 VFTFLVMVL 571 (573)
Q Consensus 563 ~~~~~~~~~ 571 (573)
+|++.+++.
T Consensus 159 ia~~~~~~~ 167 (202)
T cd04102 159 VAEQGNAEE 167 (202)
T ss_pred HHHhcCCce
Confidence 788887764
No 175
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=9.6e-23 Score=171.92 Aligned_cols=159 Identities=19% Similarity=0.294 Sum_probs=130.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eccccc---------CCceeEEEEeCCCCccchhhhHhhhc
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TR-LPEDFY---------PDRVPITIIDTPSSVEDRGKLGEELR 85 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~-~~~~~~---------~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (573)
+|.+.+|++||||||++.++..++|....-++.+. .+ +.+.+. ...+.+++|||+|++++.+....+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 57889999999999999999999987774333322 22 222222 22467899999999999999999999
Q ss_pred cCCEEEEEEeCCCcccHHHHHHHHHHHHHh--cCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 86 RADAVVLTYACDRPETLDELSTFWLPELRR--LEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 86 ~ad~il~v~D~~~~~s~~~~~~~~~~~l~~--~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
+|-+++++||+++.+||-++.+ |+..++. ++.+.-||++|||+|+.+. +.++.++ ...++.+++- ||||+||-
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~-R~Vs~~q-a~~La~kygl--PYfETSA~ 164 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQ-RVVSEDQ-AAALADKYGL--PYFETSAC 164 (219)
T ss_pred hhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhh-hhhhHHH-HHHHHHHhCC--Ceeeeccc
Confidence 9999999999999999999996 9999976 5678889999999999987 5565554 4678888884 99999999
Q ss_pred CCCCchhHHHHHHHHHh
Q 008219 164 KQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~~~ 180 (573)
+|.||++..+.+...+.
T Consensus 165 tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVM 181 (219)
T ss_pred cCcCHHHHHHHHHHHHH
Confidence 99999998887776543
No 176
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.87 E-value=3e-21 Score=177.86 Aligned_cols=137 Identities=20% Similarity=0.265 Sum_probs=114.1
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+|+|++|||||||+.+++++.+...+.++....+. ..+..++....+.+|||+|++.+..+ +..+++++|++|+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~il 78 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTDVFLI 78 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEECCEEEEEEEEECCCchhhhhh--hhhhcCCCCEEEE
Confidence 69999999999999999999999998888777654443 34556655678899999999999888 8889999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-------------cchhhHHHHHHHcCC-ccC
Q 008219 509 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-------------MAIQDSTRVFTFLVM-VLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~-~~~ 572 (573)
|||+++++||+.+. .|+..+....+ ++|++|||||+|+...+ +..+++++++++++. +||
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 153 (174)
T cd01871 79 CFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 153 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEE
Confidence 99999999999996 58877766542 79999999999996431 457888999999984 665
No 177
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=6.2e-23 Score=173.04 Aligned_cols=143 Identities=11% Similarity=0.160 Sum_probs=124.9
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCC-------C--eEEEEEEecCChhHHHhhhccc
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPG-------G--TKKTVVLREIPEEAVAKLLSNK 497 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~i~dt~G~~~~~~~~~~~ 497 (573)
..+|.+.+|++||||||++.++..+++......|.+.++..+.+.++. . ...+++|||+|+|+|+++ +-
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL--TT 85 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL--TT 85 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH--HH
Confidence 457899999999999999999999999888777888887777665431 1 235679999999999999 88
Q ss_pred cccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccCC
Q 008219 498 DSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLYK 573 (573)
Q Consensus 498 ~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~k 573 (573)
.+++.|-+++++||.++..||-++..|+.++....-++ +.-+|++|||+||++.+ +..+++.++|.++++|||.
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE--~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE--NPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccC--CCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence 99999999999999999999999999999988765555 78899999999999877 6688999999999999984
No 178
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.87 E-value=2.5e-21 Score=180.16 Aligned_cols=159 Identities=17% Similarity=0.222 Sum_probs=116.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
++.+||+++|.+|||||||++++.++.+....|+ .+.+. ..+..+++++.+|||||+..+...+..++..+|++++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t-~~~~~--~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPT-QHPTS--EELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCc-cccce--EEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 4569999999999999999999998876543332 22222 22334578899999999988888889999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHh---------cccCeEEEecCC
Q 008219 94 YACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF---------REIETCIECSAL 163 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Sa~ 163 (573)
+|++++.++......+...++.. ..++|+++|+||+|+... ++.++....+.... .....+++|||+
T Consensus 92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~---~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~ 168 (184)
T smart00178 92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA---ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVV 168 (184)
T ss_pred EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC---CCHHHHHHHcCCCcccccccccCCceeEEEEeecc
Confidence 99999998888876344433321 247999999999998654 33333222221000 012369999999
Q ss_pred CCCCchhHHHHHHHH
Q 008219 164 KQIQVPEVFYYAQKA 178 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~ 178 (573)
+|.|++++++++.++
T Consensus 169 ~~~g~~~~~~wl~~~ 183 (184)
T smart00178 169 RRMGYGEGFKWLSQY 183 (184)
T ss_pred cCCChHHHHHHHHhh
Confidence 999999999999764
No 179
>PTZ00369 Ras-like protein; Provisional
Probab=99.87 E-value=2.9e-21 Score=180.63 Aligned_cols=141 Identities=19% Similarity=0.263 Sum_probs=118.5
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+|+|.+|||||||+++++++.+...+.++.+..+ .+.+.++++...+.+|||+|++.+..+ +..+++.+|++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l--~~~~~~~~d~i 80 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAM--RDQYMRTGQGF 80 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhh--HHHHhhcCCEE
Confidence 358999999999999999999999998877777776555 355666656668889999999999988 88899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.||+.+..|+..+....... ++|+++|+||+|+...+ +...++.++++.+++++|
T Consensus 81 ilv~D~s~~~s~~~~~~~~~~i~~~~~~~--~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~ 145 (189)
T PTZ00369 81 LCVYSITSRSSFEEIASFREQILRVKDKD--RVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFL 145 (189)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHhCCEEE
Confidence 99999999999999999998887654333 79999999999996544 456678888888888765
No 180
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=3.5e-21 Score=180.06 Aligned_cols=139 Identities=22% Similarity=0.276 Sum_probs=120.0
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+|+|++|||||||+++|.++.+...+.++.+.++....+..++....+.+|||+|.+.+..+ +..+++++|++++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--~~~~~~~~d~iil 78 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSL--NNSYYRGAHGYLL 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhh--HHHHccCCCEEEE
Confidence 48999999999999999999999998777788887777777777766678899999999999888 8889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.||..+..|+..+...... ++|+++|+||+|+.+.+ +...++..+++.++++++
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~~~~---~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 140 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRYARE---NVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFF 140 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEE
Confidence 99999999999999999998876443 68999999999997554 456778888888888765
No 181
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.86 E-value=5.8e-21 Score=173.24 Aligned_cols=153 Identities=16% Similarity=0.208 Sum_probs=113.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD 97 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~ 97 (573)
||+++|.+|||||||++++++..+... .++.+..... +....+.+.+|||||++.+......+++.+|++++|||++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~-~~t~~~~~~~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~ 77 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT-IPTIGFNVET--VEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSS 77 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCcCcceEE--EEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECC
Confidence 699999999999999999999874332 2223322222 3344688999999999988888889999999999999999
Q ss_pred CcccHHHHHHHHHHHH-Hhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHH--hcccCeEEEecCCCCCCchhHHH
Q 008219 98 RPETLDELSTFWLPEL-RRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQ--FREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 98 ~~~s~~~~~~~~~~~l-~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
++.++..... |+..+ +.. ..+.|+++|+||+|+... ...++....+... .....+++++||++|.|++++|+
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 78 DRERIEEAKE-ELHKLLNEEELKGVPLLIFANKQDLPGA---LSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CHHHHHHHHH-HHHHHHhCcccCCCcEEEEeeccCCccc---cCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 9999998876 44444 322 258999999999998765 1222222222111 11123799999999999999999
Q ss_pred HHHH
Q 008219 174 YAQK 177 (573)
Q Consensus 174 ~i~~ 177 (573)
.+..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 8864
No 182
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.86 E-value=4.5e-21 Score=179.54 Aligned_cols=147 Identities=18% Similarity=0.195 Sum_probs=114.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eccccc-----CCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFY-----PDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
+||+++|++|||||||+++++++.|...+.++.+... ....+. ...+.+.||||+|++.+......+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999998877666554322 222332 356889999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhc--------------------CCCCcEEEEEeCCCCCCCcccccHHH---HHHH
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRL--------------------EVKVPVIVVGCKLDLRDENQQVSLEQ---VMMP 146 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~--------------------~~~~piilv~NK~D~~~~~~~~~~~~---~~~~ 146 (573)
+|+|||++++.|++++. .|+..+... ..++|++|||||+|+... +.++... ....
T Consensus 81 iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~-r~~~~~~~~~~~~~ 158 (202)
T cd04102 81 IILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE-KESSGNLVLTARGF 158 (202)
T ss_pred EEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh-cccchHHHhhHhhh
Confidence 99999999999999998 599988652 247899999999999765 3333332 2335
Q ss_pred HHHHhcccCeEEEecCCCCCC
Q 008219 147 IMQQFREIETCIECSALKQIQ 167 (573)
Q Consensus 147 ~~~~~~~~~~~~~~Sa~~~~g 167 (573)
++.+++. +.++.+++....
T Consensus 159 ia~~~~~--~~i~~~c~~~~~ 177 (202)
T cd04102 159 VAEQGNA--EEINLNCTNGRL 177 (202)
T ss_pred HHHhcCC--ceEEEecCCccc
Confidence 6666664 678888876543
No 183
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.86 E-value=3e-21 Score=176.08 Aligned_cols=139 Identities=16% Similarity=0.239 Sum_probs=115.3
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|.+|||||||+++++.+.+...+.++.+ ......+..++....+.+|||+|+++|..+ +..+++++|++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~~i~ 78 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASM--RDLYIKNGQGFIV 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccch--HHHHHhhCCEEEE
Confidence 6999999999999999999999998877766655 344456666755667889999999999888 8888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.||..+..|+..+....... ++|+++|+||+|+...+ +...++..+++.++++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGYE--KVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFM 141 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEE
Confidence 999999999999999998887654322 89999999999996543 345667888888887665
No 184
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.86 E-value=6.6e-21 Score=191.35 Aligned_cols=210 Identities=20% Similarity=0.238 Sum_probs=153.5
Q ss_pred cCCCCCCCcceEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhH-
Q 008219 7 ANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADT--FPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLG- 81 (573)
Q Consensus 7 ~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~- 81 (573)
+.++...+..+||+|+|.||||||||+|+|++.. ++.+.|| +|| +...+..+++++.++||+|+.+..+..+
T Consensus 208 ~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~G---TTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~ 284 (454)
T COG0486 208 AKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAG---TTRDVIEEDINLNGIPVRLVDTAGIRETDDVVER 284 (454)
T ss_pred hhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCC---CccceEEEEEEECCEEEEEEecCCcccCccHHHH
Confidence 3455667889999999999999999999999977 5666777 666 6777888999999999999987666544
Q ss_pred -------hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc
Q 008219 82 -------EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI 154 (573)
Q Consensus 82 -------~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 154 (573)
..+++||++++|+|.+.+.+-.+.. .+. ....++|+++|.||+|+..... .... ....-
T Consensus 285 iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~--~~~---~~~~~~~~i~v~NK~DL~~~~~-------~~~~--~~~~~ 350 (454)
T COG0486 285 IGIERAKKAIEEADLVLFVLDASQPLDKEDLA--LIE---LLPKKKPIIVVLNKADLVSKIE-------LESE--KLANG 350 (454)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH--HHH---hcccCCCEEEEEechhcccccc-------cchh--hccCC
Confidence 6699999999999998863333333 333 2234799999999999998621 1111 11222
Q ss_pred CeEEEecCCCCCCchhHHHHHHHHHhCC---C-CCCcchhhhh-chhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhh
Q 008219 155 ETCIECSALKQIQVPEVFYYAQKAVLHP---T-GPLFDQESQA-LKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKC 229 (573)
Q Consensus 155 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~~---~-~~~~~~~~~~-~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~ 229 (573)
.+++.+||++|.|++.|.+.+.+.+... . .....+.++. ...++..++++.....+...+.++..++++..+..+
T Consensus 351 ~~~i~iSa~t~~Gl~~L~~~i~~~~~~~~~~~~~~~i~~~Rh~~~L~~a~~~l~~a~~~~~~~~~~dl~a~dLr~A~~~L 430 (454)
T COG0486 351 DAIISISAKTGEGLDALREAIKQLFGKGLGNQEGLFLSNLRHIQLLEQAAEHLEDALQQLELGQPLDLLAEDLRLAQEAL 430 (454)
T ss_pred CceEEEEecCccCHHHHHHHHHHHHhhcccccccceeecHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHHH
Confidence 2689999999999999999998876544 1 1122223332 556677777777776665557788899998888876
Q ss_pred cCCC
Q 008219 230 FNSP 233 (573)
Q Consensus 230 ~~~~ 233 (573)
....
T Consensus 431 geIt 434 (454)
T COG0486 431 GEIT 434 (454)
T ss_pred HHhh
Confidence 5443
No 185
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.86 E-value=4.6e-21 Score=174.48 Aligned_cols=139 Identities=17% Similarity=0.304 Sum_probs=118.8
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++....+.+||++|++.+..+ +..+++++|++++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--~~~~~~~~~~~i~ 78 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSV--TRSYYRGAAGALL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHh--HHHHhcCCCEEEE
Confidence 48999999999999999999999988777777777676666777755678899999999999887 7788999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.+|..+..|+..+...... ++|+++|+||+|+...+ +..+++..+++.++++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd04113 79 VYDITNRTSFEALPTWLSDARALASP---NIVVILVGNKSDLADQREVTFLEASRFAQENGLLFL 140 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEE
Confidence 99999999999999999887655432 89999999999997644 457788889998887765
No 186
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.86 E-value=3.2e-21 Score=180.50 Aligned_cols=140 Identities=19% Similarity=0.247 Sum_probs=114.9
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 509 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv 509 (573)
||+|+|.+|||||||+++|+++.+...+.++.+..+. ..+..++....+.+|||+|++++..+ +..+++.+|++++|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~~ilv 77 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTAL--RDQWIREGEGFILV 77 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHH--HHHHHHhCCEEEEE
Confidence 5899999999999999999999988877777765554 34556655567899999999999988 88899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 510 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 510 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
||++++.||+.+..|+..+.........++|+++||||+|+...+ +...++.++++.++++||
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 141 (190)
T cd04144 78 YSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFI 141 (190)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEE
Confidence 999999999999999988766432111279999999999996544 456677888988888765
No 187
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.86 E-value=5.6e-21 Score=179.04 Aligned_cols=157 Identities=22% Similarity=0.342 Sum_probs=115.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
.+.+||+++|++|||||||++++.+..+....+ +.+.+. ..+...++.+.+|||||+..+...+..+++.+|++++|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~-T~~~~~--~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVP-TLHPTS--EELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCC-ccCcce--EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 457999999999999999999999887643233 332222 23334568899999999988877788899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHh-c-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHh--------------cccCeE
Q 008219 94 YACDRPETLDELSTFWLPELRR-L-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF--------------REIETC 157 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~-~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 157 (573)
+|+++..++..... |+..+.. . ..+.|+++|+||+|+... +..++. ....... ....++
T Consensus 94 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~~pvivv~NK~Dl~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 94 VDAADPERFQESKE-ELDSLLSDEELANVPFLILGNKIDLPGA---VSEEEL-RQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EECCcHHHHHHHHH-HHHHHHcCccccCCCEEEEEeCCCCCCC---cCHHHH-HHHhCcccccccccccccccCceeEEE
Confidence 99999988887775 4444433 2 247999999999998753 333322 2222211 111268
Q ss_pred EEecCCCCCCchhHHHHHHHH
Q 008219 158 IECSALKQIQVPEVFYYAQKA 178 (573)
Q Consensus 158 ~~~Sa~~~~gi~~l~~~i~~~ 178 (573)
++|||++|.|++++|+++.+.
T Consensus 169 ~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 169 FMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEeEecCCCChHHHHHHHHhh
Confidence 999999999999999998763
No 188
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2e-21 Score=160.53 Aligned_cols=142 Identities=15% Similarity=0.285 Sum_probs=130.0
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+|.+|||+-|||||+|++.|...++...-+.+++..+-...+.+.|.+.+++||||+|+++|+.+ ++.|++++.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfrav--trsyyrgaag 86 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV--TRSYYRGAAG 86 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHH--HHHHhccccc
Confidence 46789999999999999999999999999888889999999999999988889999999999999999 9999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
.++|||++.+.++..+..|+.+......+ +..++++|||.||+..+ +..+++++|+++.|+.|.
T Consensus 87 almvyditrrstynhlsswl~dar~ltnp---nt~i~lignkadle~qrdv~yeeak~faeengl~fl 151 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFL 151 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCC---ceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEE
Confidence 99999999999999999999887765433 78899999999998776 779999999999998764
No 189
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.86 E-value=4.6e-21 Score=175.34 Aligned_cols=137 Identities=14% Similarity=0.205 Sum_probs=113.6
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||+++++.+.+...+.++.+.+.....+...++...+.+|||+|++.+..+ +..++..+|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~i~ 78 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL--RDGYYIGGQCAII 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccc--cHHHhcCCCEEEE
Confidence 48999999999999999999988877777777776665555555656678999999999988887 7788899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.||+.+..|+..+..... ++|+++||||+|+....+ ..+..++++..++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~----~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~ 137 (166)
T cd00877 79 MFDVTSRVTYKNVPNWHRDLVRVCG----NIPIVLCGNKVDIKDRKV-KAKQITFHRKKNLQYY 137 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEEchhcccccC-CHHHHHHHHHcCCEEE
Confidence 9999999999999999999887654 799999999999974333 3345567777677665
No 190
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.86 E-value=6.8e-21 Score=173.37 Aligned_cols=136 Identities=21% Similarity=0.280 Sum_probs=111.8
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|.+|||||||+++++++.+...+.++.+.......+..++....+.+|||+|++.+..+ +..+++++|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~i~ 78 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTM--HASYYHKAHACIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhh--hHHHhCCCCEEEE
Confidence 48999999999999999999999887766666554444445556655668889999999999998 8889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.+|+.+..|+..+....+ ++|+++|+||+|+... ...+..++++.+++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~----~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~ 136 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREYRP----EIPCIVVANKIDLDPS--VTQKKFNFAEKHNLPLY 136 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEECccCchh--HHHHHHHHHHHcCCeEE
Confidence 9999999999999999998876543 7999999999998542 23455667777777665
No 191
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=7e-21 Score=178.39 Aligned_cols=139 Identities=18% Similarity=0.313 Sum_probs=116.7
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCC-CCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
+||+|+|++|||||||+++|.++++.. .+.++.+..+....+.+++....+.+|||+|++.+..+ +..+++.+|+++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~ad~~i 78 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSV--THAYYRDAHALL 78 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHh--hHHHccCCCEEE
Confidence 489999999999999999999988764 45566666666556667766678899999999999887 778899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+|||++++.||+.+..|+..+...... ++|+++|+||+|+...+ +..++++++++.++++|+
T Consensus 79 ~v~D~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 141 (191)
T cd04112 79 LLYDITNKASFDNIRAWLTEIKEYAQE---DVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFM 141 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEE
Confidence 999999999999999999888876543 79999999999996544 456778889988888765
No 192
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.86 E-value=9.3e-21 Score=172.45 Aligned_cols=140 Identities=16% Similarity=0.271 Sum_probs=120.6
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+|+|++|||||||+++|.+..+...+.++.+.++....+...+....+.+||++|++.+..+ +..+++.+|++++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~d~~i~ 78 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL--TSSYYRGAQGVIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhh--hHHHhCCCCEEEE
Confidence 58999999999999999999999887777788887777676666655678899999999988887 7788899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.+|+.+..|+..+....... ++|+++|+||+|+.......++..+++++.+++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYSTNN--DIVKMLVGNKIDKENREVTREEGLKFARKHNMLFI 140 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCCCC--CCcEEEEEECCcccccccCHHHHHHHHHHcCCEEE
Confidence 999999999999999998887765433 89999999999998655566788889998888775
No 193
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.86 E-value=4.9e-21 Score=175.42 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=109.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC------CCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFP------ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
+|+++|++|||||||+++|.+.... ..+.++.+.. ...+...+..+.+|||||+..+......+++.+|+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v 78 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLN--IGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAII 78 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccc--eEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 5899999999999999999864321 1111111111 1223345789999999999988888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHh-c-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHh----cc-cCeEEEecCCC
Q 008219 92 LTYACDRPETLDELSTFWLPELRR-L-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF----RE-IETCIECSALK 164 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~-~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~Sa~~ 164 (573)
+|+|++++.++..... |+..+.. . ..++|+++|+||+|+... ....+. ..+.... +. ..+++++||++
T Consensus 79 ~vvd~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~D~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 79 YVIDSTDRERFEESKS-ALEKVLRNEALEGVPLLILANKQDLPDA---LSVEEI-KEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred EEEECchHHHHHHHHH-HHHHHHhChhhcCCCEEEEEEccccccC---CCHHHH-HHHhccccccccCCceEEEEeeCCC
Confidence 9999999888888775 5444433 2 247999999999998664 222222 2222211 11 12799999999
Q ss_pred CCCchhHHHHHHH
Q 008219 165 QIQVPEVFYYAQK 177 (573)
Q Consensus 165 ~~gi~~l~~~i~~ 177 (573)
|.|++++++++.+
T Consensus 154 g~gv~e~~~~l~~ 166 (167)
T cd04160 154 GTGVREGIEWLVE 166 (167)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999998864
No 194
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.86 E-value=1.8e-22 Score=165.20 Aligned_cols=156 Identities=24% Similarity=0.329 Sum_probs=128.5
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeC
Q 008219 20 VVCGEKGTGKSSLIVTAAADTFPAN--VPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (573)
Q Consensus 20 ~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~ 96 (573)
+++|++++|||+|+-|+-.+.|... .+++.-.++ .-.+++...+++++|||+|++++.+....++++||+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 3789999999999988877665433 222222333 5566778889999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHHH
Q 008219 97 DRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYA 175 (573)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 175 (573)
+++.||++... |+.++..+. ..+.+++++||||+..+ +.+..++. +.+++.++- |++++||++|.|++-.|-.+
T Consensus 81 ankasfdn~~~-wlsei~ey~k~~v~l~llgnk~d~a~e-r~v~~ddg-~kla~~y~i--pfmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 81 ANKASFDNCQA-WLSEIHEYAKEAVALMLLGNKCDLAHE-RAVKRDDG-EKLAEAYGI--PFMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred ccchhHHHHHH-HHHHHHHHHHhhHhHhhhccccccchh-hccccchH-HHHHHHHCC--CceeccccccccHhHHHHHH
Confidence 99999999996 999998875 46889999999999776 55555544 677888873 99999999999999999888
Q ss_pred HHHHh
Q 008219 176 QKAVL 180 (573)
Q Consensus 176 ~~~~~ 180 (573)
.+.+.
T Consensus 156 a~~l~ 160 (192)
T KOG0083|consen 156 AEELK 160 (192)
T ss_pred HHHHH
Confidence 87654
No 195
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.85 E-value=9.6e-21 Score=172.31 Aligned_cols=139 Identities=16% Similarity=0.259 Sum_probs=118.1
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||+++|++.++...+.++.+.++....+..++....+.+|||+|++.+..+ ...+++.+|++++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--~~~~~~~~~~ii~ 78 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSL--IPSYIRDSSVAVV 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhccCCEEEE
Confidence 38999999999999999999999988877777777777777777755568899999999999887 7788999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.||+.+..|+..+...... +.|+++|+||+|+...+ ...++...+++..+++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd01861 79 VYDITNRQSFDNTDKWIDDVRDERGN---DVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFI 140 (161)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEE
Confidence 99999999999999999988765432 69999999999995443 456778888888777654
No 196
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.85 E-value=9.3e-21 Score=177.03 Aligned_cols=137 Identities=20% Similarity=0.272 Sum_probs=112.6
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcC-CCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
+||+|+|++|||||||+++|+++.+...+.++.+.++.. .+... +....+.+|||+|++.+..+ +..+++++|+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~ii 77 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRL--RPLSYPDVDVLL 77 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHH--HHHhCCCCCEEE
Confidence 489999999999999999999999887777776655543 34444 45668899999999999888 778899999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-----cchhhHHHHHHHcCC-ccC
Q 008219 508 FVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-----MAIQDSTRVFTFLVM-VLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~-~~~ 572 (573)
+|||++++.||+.+. .|+..+....+ ++|+++|+||+|+.... +...+++++++.+++ ++|
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 145 (187)
T cd04132 78 ICYAVDNPTSLDNVEDKWFPEVNHFCP----GTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYL 145 (187)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEE
Confidence 999999999999996 58877765433 79999999999996532 346788899999887 654
No 197
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.85 E-value=1.1e-20 Score=172.78 Aligned_cols=141 Identities=16% Similarity=0.250 Sum_probs=114.0
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||+++++++.+...+.++.+..+. ..+...++...+.+|||+|++.+..+ +..+++.+|++++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~il 78 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKNICTLQITDTTGSHQFPAM--QRLSISKGHAFIL 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEE-EEEEECCEEEEEEEEECCCCCcchHH--HHHHhhcCCEEEE
Confidence 68999999999999999999999988777776664443 34445545668889999999999887 7778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.||+.+..|+..+.........++|+++|+||+|+...+ +...++..+++.++++||
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 143 (165)
T cd04140 79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFM 143 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEE
Confidence 9999999999999999877765432211279999999999997643 556677888888887765
No 198
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.85 E-value=1.2e-20 Score=172.28 Aligned_cols=140 Identities=18% Similarity=0.319 Sum_probs=115.3
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.+||+++|++|||||||+++++++.+...+.++.+..+ .....+.+....+.+|||+|++++..+ ...+++.+|+++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~i 78 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAM--REQYMRTGEGFL 78 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHH--HHHHHhhCCEEE
Confidence 47999999999999999999999887766666665443 344556655568889999999999888 778899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+|||++++.+|+.+..|+..+....... +.|+++|+||+|+...+ ...+++.++++.+++++|
T Consensus 79 lv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04145 79 LVFSVTDRGSFEEVDKFHTQILRVKDRD--EFPMILVGNKADLEHQRKVSREEGQELARKLKIPYI 142 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCC--CCCEEEEeeCccccccceecHHHHHHHHHHcCCcEE
Confidence 9999999999999999998887653322 79999999999997654 445678889988888765
No 199
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.85 E-value=1.1e-20 Score=176.76 Aligned_cols=136 Identities=22% Similarity=0.261 Sum_probs=112.5
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 509 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv 509 (573)
||+|+|++|||||||+++|.++.+...+.++.+..+. ..+..++....+.+|||+|++.+..+ +..+++.+|++++|
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l--~~~~~~~a~~~ilv 78 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRL--RSLSYADTDVIMLC 78 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhcccc--ccccccCCCEEEEE
Confidence 7999999999999999999999998888788776654 44555655678899999999999888 77889999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-------------cchhhHHHHHHHcC-CccC
Q 008219 510 HDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-------------MAIQDSTRVFTFLV-MVLY 572 (573)
Q Consensus 510 ~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~-~~~~ 572 (573)
||++++.||+.+. .|+..+....+ +.|++|||||+|+...+ +..+++.+++++.+ ++||
T Consensus 79 ~dv~~~~sf~~~~~~~~~~i~~~~~----~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 152 (189)
T cd04134 79 FSVDSPDSLENVESKWLGEIREHCP----GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYL 152 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEE
Confidence 9999999999986 58888876543 79999999999997543 23456778888777 5554
No 200
>PLN03108 Rab family protein; Provisional
Probab=99.85 E-value=1.8e-20 Score=178.05 Aligned_cols=141 Identities=13% Similarity=0.228 Sum_probs=122.0
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+....+.+|||+|++.+..+ +..+++.+|++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~--~~~~~~~ad~~ 82 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI--TRSYYRGAAGA 82 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHhccCCEE
Confidence 4589999999999999999999999888888888887777777777766668889999999999888 78889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.||+.+..|+..+...... ++|+++|+||+|+...+ +..++++++++++++++|
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~---~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANA---NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM 146 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999887655432 79999999999997654 557788999999988775
No 201
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.85 E-value=1.1e-20 Score=172.60 Aligned_cols=139 Identities=19% Similarity=0.323 Sum_probs=115.3
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+|+|++|||||||+++|+++.+...+.++.+..+. ..+..++....+.+|||+|++++..+ +..+++.+|++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~--~~~~~~~~~~~i~ 77 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYR-KQIEIDGEVCLLDILDTAGQEEFSAM--RDQYMRTGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEE-EEEEECCEEEEEEEEECCCcccchHH--HHHHHhhCCEEEE
Confidence 48999999999999999999999988777666654443 44556655678889999999999888 7788999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++++|+.+..|+..+....... ++|+++|+||+|+...+ ...+++.++++.+++++|
T Consensus 78 v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T smart00173 78 VYSITDRQSFEEIKKFREQILRVKDRD--DVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFL 140 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccceEcHHHHHHHHHHcCCEEE
Confidence 999999999999999988876654333 79999999999997644 456778888988887765
No 202
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.85 E-value=2e-20 Score=170.69 Aligned_cols=139 Identities=19% Similarity=0.328 Sum_probs=119.0
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||+++|.+..+...+.++.+.++....+..++....+.+||++|.+.+..+ ...+++.+|++++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~il 78 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSI--TSSYYRGAVGALL 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHhCCCCEEEE
Confidence 48999999999999999999999887777777777777777777755668899999999988887 7888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ ...+.+++++++++++++
T Consensus 79 v~d~~~~~s~~~~~~~l~~~~~~~~~---~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T smart00175 79 VYDITNRESFENLKNWLKELREYADP---NVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFF 140 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEE
Confidence 99999999999999999988776532 79999999999987643 456778889998888765
No 203
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.85 E-value=1.5e-20 Score=176.21 Aligned_cols=132 Identities=16% Similarity=0.221 Sum_probs=113.3
Q ss_pred EcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCC
Q 008219 434 FGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSS 513 (573)
Q Consensus 434 vG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~ 513 (573)
+|.+|||||||+++|+.+.+...+.++.+.++....+..+++...+.||||+|++.|..+ +..+++++|++++|||++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l--~~~~~~~ad~~ilV~D~t 78 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL--RDGYYIQGQCAIIMFDVT 78 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhh--hHHHhcCCCEEEEEEECC
Confidence 699999999999999998888777888877777677777766789999999999999998 888999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 514 DESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 514 ~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
++.||+.+..|+..+..... ++|++|||||+|+....+..+ ..++++..++.||
T Consensus 79 ~~~S~~~i~~w~~~i~~~~~----~~piilvgNK~Dl~~~~v~~~-~~~~~~~~~~~~~ 132 (200)
T smart00176 79 ARVTYKNVPNWHRDLVRVCE----NIPIVLCGNKVDVKDRKVKAK-SITFHRKKNLQYY 132 (200)
T ss_pred ChHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccCCHH-HHHHHHHcCCEEE
Confidence 99999999999999987643 899999999999965444433 3468888888776
No 204
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.84 E-value=2.7e-20 Score=174.81 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=108.9
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhh------cccccccc
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL------SNKDSLAA 502 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~------~~~~~~~~ 502 (573)
+||+|+|++|||||||+++|+++++...+.++.+.+.....+..++....+.+|||+|.+.+.... .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 489999999999999999999999988887777655554556666556788899999854321110 02345789
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHH-HcCCccC
Q 008219 503 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFT-FLVMVLY 572 (573)
Q Consensus 503 ~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~-~~~~~~~ 572 (573)
+|++++|||+++++||+.+..|+..+.........++|+++|+||+|+...+ +..++.+++++ .++++||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYL 152 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEE
Confidence 9999999999999999999999988876531001179999999999996654 44556666654 5678776
No 205
>PRK15494 era GTPase Era; Provisional
Probab=99.84 E-value=5.2e-20 Score=186.64 Aligned_cols=167 Identities=19% Similarity=0.288 Sum_probs=114.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccc-hhh-------hHhh
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVED-RGK-------LGEE 83 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~-~~~-------~~~~ 83 (573)
.+.++|+++|++|||||||+|+|++..+....+. ..+|+ ....+..++.++.+|||||+... ... ...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k-~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPK-VQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCC-CCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 4567999999999999999999998876533221 22332 22334456778999999998532 211 1135
Q ss_pred hccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 84 ~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
+..+|++++|+|.++ ++......|++.++.. +.|+++|+||+|+... ...+. ............++++||+
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~----~~~~~-~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK----YLNDI-KAFLTENHPDSLLFPISAL 199 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc----cHHHH-HHHHHhcCCCcEEEEEecc
Confidence 789999999999554 5666655577777665 6788899999998643 12222 2222222222379999999
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCcchhh
Q 008219 164 KQIQVPEVFYYAQKAVLHPTGPLFDQES 191 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~~~~~~~~~~~~~~ 191 (573)
+|.|++++++++.+.+ .+.++.|....
T Consensus 200 tg~gv~eL~~~L~~~l-~~~~~~~~~~~ 226 (339)
T PRK15494 200 SGKNIDGLLEYITSKA-KISPWLYAEDD 226 (339)
T ss_pred CccCHHHHHHHHHHhC-CCCCCCCCCCC
Confidence 9999999999998754 34455555443
No 206
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.84 E-value=3.4e-20 Score=169.25 Aligned_cols=138 Identities=19% Similarity=0.307 Sum_probs=113.5
Q ss_pred EEEEEEcCCCCChhHHHHHhhCC--CCCCCCCCCCcccEEEEEEEcC-CCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGR--PFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
+||+++|++|||||||+++|.++ .+...+.++.+.+.....+... +....+.+|||+|++.+..+ ...+++++|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~ 78 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDM--VSNYWESPSV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHH--HHHHhCCCCE
Confidence 48999999999999999999864 6667777777766665656554 35578999999999998888 7788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|..+..|+..+..... ++|+++|+||+|+...+ +...+++.+++.++++++
T Consensus 79 ii~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04101 79 FILVYDVSNKASFENCSRWVNKVRTASK----HMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFF 142 (164)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999988876642 79999999999996544 345566777777777764
No 207
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.84 E-value=7.8e-20 Score=180.41 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=111.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCCCCeeecccccCCceeEEEEeCCCCccchh--------hhHhhhccC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPA--NVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG--------KLGEELRRA 87 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~a 87 (573)
+|+++|+||||||||+|+|++..+.. ..+++.... .......++.++.+|||||+..... ....+++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~-i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR-ISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc-EEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 79999999999999999999987543 344322211 2223334456799999999864321 123568899
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCC
Q 008219 88 DAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (573)
Q Consensus 88 d~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (573)
|++++|+|+++..+.. ..+...++.. ++|+++|+||+|+... ....+....+....+ ..+++++||++|.|
T Consensus 81 Dvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~~~-~~~v~~iSA~~g~g 151 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFK---DKLLPLIDKYAILED-FKDIVPISALTGDN 151 (270)
T ss_pred CEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCH---HHHHHHHHHHHhhcC-CCceEEEecCCCCC
Confidence 9999999999876664 3366666654 7899999999999743 111122222322222 23799999999999
Q ss_pred chhHHHHHHHHHhCCCCCCcchh
Q 008219 168 VPEVFYYAQKAVLHPTGPLFDQE 190 (573)
Q Consensus 168 i~~l~~~i~~~~~~~~~~~~~~~ 190 (573)
++++++.+.+.+ .+.++.|..+
T Consensus 152 i~~L~~~l~~~l-~~~~~~~~~~ 173 (270)
T TIGR00436 152 TSFLAAFIEVHL-PEGPFRYPED 173 (270)
T ss_pred HHHHHHHHHHhC-CCCCCCCCCc
Confidence 999999998764 3334444443
No 208
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.84 E-value=5e-20 Score=168.88 Aligned_cols=154 Identities=21% Similarity=0.211 Sum_probs=104.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeecccccCCceeEEEEeCCCCccchh---------hhHhhhccC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG---------KLGEELRRA 87 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~~~~a 87 (573)
+|+++|++|||||||+|+|++..+... ++.+... .....+..+++.+.||||||+..... ........+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKS-LFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccc-eeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 799999999999999999999876422 2221111 11222334568999999999842110 111112346
Q ss_pred CEEEEEEeCCCcccH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCC
Q 008219 88 DAVVLTYACDRPETL--DELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (573)
Q Consensus 88 d~il~v~D~~~~~s~--~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (573)
|++++|+|++++.++ +... .|++.++....+.|+++|+||+|+... ... .+ ...+. .... .++++|||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~-~~~~~l~~~~~~~pvilv~NK~Dl~~~-~~~--~~-~~~~~-~~~~-~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQL-SLFEEIKPLFKNKPVIVVLNKIDLLTF-EDL--SE-IEEEE-ELEG-EEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHH-HHHHHHHhhcCcCCeEEEEEccccCch-hhH--HH-HHHhh-hhcc-CceEEEEeccc
Confidence 999999999987654 4444 488888765558999999999999765 111 11 12222 2222 37999999999
Q ss_pred CCchhHHHHHHHHH
Q 008219 166 IQVPEVFYYAQKAV 179 (573)
Q Consensus 166 ~gi~~l~~~i~~~~ 179 (573)
.|++++++++.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
No 209
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.84 E-value=2.9e-20 Score=174.60 Aligned_cols=138 Identities=15% Similarity=0.201 Sum_probs=114.5
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCC-CCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
+||+|+|++|||||||+++|+++.+.. .+.++.+..+..+.+..++....+.+||++|++.+..+ +..+++++|+++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~~d~ii 78 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAM--SRIYYRGAKAAI 78 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhh--hHhhcCCCCEEE
Confidence 489999999999999999999988864 46667766666667777766678889999999988887 778889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-----cchhhHHHHHHHcCCccC
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-----MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~ 572 (573)
+|||++++.||+.+..|+..+..... ++|+++|+||+|+.... +...++.++++.+++++|
T Consensus 79 lv~d~~~~~s~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~ 144 (193)
T cd04118 79 VCYDLTDSSSFERAKFWVKELQNLEE----HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHF 144 (193)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhcCC----CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEE
Confidence 99999999999999999988876543 79999999999985421 234567788888777654
No 210
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.84 E-value=4.6e-20 Score=168.18 Aligned_cols=139 Identities=20% Similarity=0.280 Sum_probs=118.5
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+|+|++|||||||+++|+++++...+.++.+..+....+..++....+.+||++|++.+... +..+++++|++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~i~ 79 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSL--APMYYRGAAAAIV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHH--HHHHhccCCEEEE
Confidence 79999999999999999999999988767777776676677788766778999999999988887 7778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|+|++++.+|.....|+..+...... ++|+++|+||+|+...+ ....+...++++++++++
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 141 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNASP---NIIIALVGNKADLESKRQVSTEEAQEYADENGLLFF 141 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEE
Confidence 99999999999999999988776532 79999999999987543 456677888888887654
No 211
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.84 E-value=3.6e-20 Score=167.61 Aligned_cols=154 Identities=18% Similarity=0.235 Sum_probs=112.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCC
Q 008219 19 IVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDR 98 (573)
Q Consensus 19 I~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~ 98 (573)
|+++|++|||||||+++|.+..+...+.++.+..... +..+.+.+.+|||||+..+...+..+++.+|++++|+|+++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 79 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD 79 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC
Confidence 8999999999999999999998877655443332222 23345889999999999888888899999999999999999
Q ss_pred cccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHH-H-hcccCeEEEecCCCCCCchhHHHHH
Q 008219 99 PETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ-Q-FREIETCIECSALKQIQVPEVFYYA 175 (573)
Q Consensus 99 ~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~Sa~~~~gi~~l~~~i 175 (573)
..++......|...++.. ..++|+++|+||+|+... ....+....+.. . .....+++++||++|.|++++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 156 (159)
T cd04159 80 RTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA---LSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWL 156 (159)
T ss_pred HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC---cCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHH
Confidence 888887765333333321 247899999999998764 111211111110 0 1111278999999999999999988
Q ss_pred HH
Q 008219 176 QK 177 (573)
Q Consensus 176 ~~ 177 (573)
.+
T Consensus 157 ~~ 158 (159)
T cd04159 157 IK 158 (159)
T ss_pred hh
Confidence 64
No 212
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.84 E-value=2.8e-20 Score=176.59 Aligned_cols=130 Identities=15% Similarity=0.267 Sum_probs=107.1
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+|+|.+|||||||+++|+++++.. +.++.+..+..... +...+.+|||+|++.|..+ +..+++++|++|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l--~~~~~~~ad~~Il 73 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGL--GSMYCRGAAAVIL 73 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhh--HHHHhccCCEEEE
Confidence 489999999999999999999999864 45565544433222 3467889999999999988 7889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc-------------------c-ccchhhHHHHHHHcC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-------------------F-AMAIQDSTRVFTFLV 568 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-------------------~-~~~~~~~~~~~~~~~ 568 (573)
|||++++.||+.+..|+..+...... ++|+||||||+|+.. . .+..++++.+|++++
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~~~~---~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~ 150 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDTANE---DCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRIN 150 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhC
Confidence 99999999999999988877664322 799999999999965 2 256789999999876
No 213
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=4.5e-20 Score=172.62 Aligned_cols=137 Identities=18% Similarity=0.229 Sum_probs=106.0
Q ss_pred eEEEEEEcCCCCChhHHHH-HhhCCC-----CCCCCCCCCcc--cEEEE-------EEEcCCCeEEEEEEecCChhHHHh
Q 008219 428 VFQCFVFGPKKAGKSVLLN-SFLGRP-----FSDNYTPTTDE--RYAVN-------VVDQPGGTKKTVVLREIPEEAVAK 492 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~-~l~~~~-----~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~i~dt~G~~~~~~ 492 (573)
.+||+++|++|||||||++ ++.++. +...+.||.+. .+... .+.+++....+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 3799999999999999996 665543 34455666642 22221 113455677899999999975 2
Q ss_pred hhccccccccccEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcc-------------------
Q 008219 493 LLSNKDSLAACDIAVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDS------------------- 552 (573)
Q Consensus 493 ~~~~~~~~~~~d~vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------------- 552 (573)
+ ...+++++|++++|||++++.||+.+. .|+..+....+ +.|++|||||+||..
T Consensus 80 ~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~----~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~ 153 (195)
T cd01873 80 D--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP----RVPVILVGCKLDLRYADLDEVNRARRPLARPIKN 153 (195)
T ss_pred h--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhccccccchhhhccccccccccc
Confidence 4 556889999999999999999999997 58888876543 789999999999963
Q ss_pred -cccchhhHHHHHHHcCCccC
Q 008219 553 -FAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 553 -~~~~~~~~~~~~~~~~~~~~ 572 (573)
..+..++++++|++++++||
T Consensus 154 ~~~V~~~e~~~~a~~~~~~~~ 174 (195)
T cd01873 154 ADILPPETGRAVAKELGIPYY 174 (195)
T ss_pred CCccCHHHHHHHHHHhCCEEE
Confidence 23568899999999999886
No 214
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.84 E-value=2.8e-20 Score=171.62 Aligned_cols=135 Identities=20% Similarity=0.289 Sum_probs=111.7
Q ss_pred EEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEEE
Q 008219 431 CFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVH 510 (573)
Q Consensus 431 i~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~ 510 (573)
|+|+|++|||||||+++|+++.+...+.++....+. ..+..++....+.+|||+|++.+..+ +..+++++|++++||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~ilv~ 77 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRL--RPLSYPDTDVFLICF 77 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchh--chhhcCCCCEEEEEE
Confidence 689999999999999999999998777777665444 44566655568899999999998887 778899999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-------------cchhhHHHHHHHcCC-ccC
Q 008219 511 DSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-------------MAIQDSTRVFTFLVM-VLY 572 (573)
Q Consensus 511 D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~-~~~ 572 (573)
|+++++||+.+. .|+..+....+ ++|+++||||+|+.... +..++++++++++++ +||
T Consensus 78 d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 150 (174)
T smart00174 78 SVDSPASFENVKEKWYPEVKHFCP----NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYL 150 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEE
Confidence 999999999996 58888876543 89999999999996532 446778889999886 654
No 215
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=8.6e-20 Score=169.21 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=109.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCCC------CCee----ecccc---cCCceeEEEEeCCCCccch
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADT-------FPANVPPVL------PPTR----LPEDF---YPDRVPITIIDTPSSVEDR 77 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~-------~~~~~~~~~------~~~~----~~~~~---~~~~~~~~i~Dt~G~~~~~ 77 (573)
+|+++|++|||||||+++|++.. +...+..+. +.+. ....+ ...++.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999999743 111111111 1111 11222 4567889999999999998
Q ss_pred hhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc-Ce
Q 008219 78 GKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI-ET 156 (573)
Q Consensus 78 ~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~ 156 (573)
.....+++.+|++|+|+|+++..+...... |.... . .++|+++|+||+|+... . ..+....+.+.++.. .+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~-~~~~~-~--~~~~iiiv~NK~Dl~~~-~---~~~~~~~~~~~~~~~~~~ 153 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLAN-FYLAL-E--NNLEIIPVINKIDLPSA-D---PERVKQQIEDVLGLDPSE 153 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHH-HHHHH-H--cCCCEEEEEECCCCCcC-C---HHHHHHHHHHHhCCCccc
Confidence 888899999999999999998777666552 44332 2 37899999999998653 1 122223444444321 24
Q ss_pred EEEecCCCCCCchhHHHHHHHHH
Q 008219 157 CIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 157 ~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
++++||++|.|++++++.+.+.+
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 154 AILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEEeeccCCCCHHHHHHHHHhhC
Confidence 89999999999999999998764
No 216
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.83 E-value=2.6e-20 Score=172.99 Aligned_cols=140 Identities=21% Similarity=0.307 Sum_probs=124.3
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.+|++|+|.+|||||+|+.+|+++.+...|.|++...+. +.+.++++...+.|+||+|++.+..+ ...+++.+|+++
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~-k~~~v~~~~~~l~ilDt~g~~~~~~~--~~~~~~~~~gF~ 79 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYR-KELTVDGEVCMLEILDTAGQEEFSAM--RDLYIRNGDGFL 79 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccccce-EEEEECCEEEEEEEEcCCCcccChHH--HHHhhccCcEEE
Confidence 579999999999999999999999999999999986555 55667767778889999999999998 888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+||+++++.||+.+..++..+.+..... .+|+++||||+|+...+ +..++++.+++.++++|+
T Consensus 80 lVysitd~~SF~~~~~l~~~I~r~~~~~--~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~ 143 (196)
T KOG0395|consen 80 LVYSITDRSSFEEAKQLREQILRVKGRD--DVPIILVGNKCDLERERQVSEEEGKALARSWGCAFI 143 (196)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcC--CCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEE
Confidence 9999999999999999999995544443 78999999999998855 778999999999999875
No 217
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=2.2e-19 Score=170.52 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=122.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhh--------hHh
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGK--------LGE 82 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~ 82 (573)
.++...|+|+|+||||||||+|+|++.+.....+. ..+|+ +.+.+..+..++.++||||....... ...
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k-~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCC-cchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 34567899999999999999999999986544332 22444 55666677899999999998654322 236
Q ss_pred hhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecC
Q 008219 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (573)
Q Consensus 83 ~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (573)
.+.++|+++||+|++....- .++..++.++.. +.|+++++||+|...... ......+....... ...++++||
T Consensus 82 sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~~--~~pvil~iNKID~~~~~~--~l~~~~~~~~~~~~-f~~ivpiSA 154 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGP--GDEFILEQLKKT--KTPVILVVNKIDKVKPKT--VLLKLIAFLKKLLP-FKEIVPISA 154 (298)
T ss_pred HhccCcEEEEEEeccccCCc--cHHHHHHHHhhc--CCCeEEEEEccccCCcHH--HHHHHHHHHHhhCC-cceEEEeec
Confidence 69999999999998875433 333466777663 789999999999887621 01222233333333 348999999
Q ss_pred CCCCCchhHHHHHHHHHhCCCCCCcchhhhhchhh
Q 008219 163 LKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPR 197 (573)
Q Consensus 163 ~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 197 (573)
++|.|++.|.+.+... +...++.|..+.-...++
T Consensus 155 ~~g~n~~~L~~~i~~~-Lpeg~~~yp~d~itD~~~ 188 (298)
T COG1159 155 LKGDNVDTLLEIIKEY-LPEGPWYYPEDQITDRPE 188 (298)
T ss_pred cccCCHHHHHHHHHHh-CCCCCCcCChhhccCChH
Confidence 9999999999987764 444444454443333333
No 218
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.83 E-value=6.2e-20 Score=169.19 Aligned_cols=137 Identities=16% Similarity=0.293 Sum_probs=112.2
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||++++.++.+...+.+++...+. ..+..++....+.+|||+|++.+..+ +..+++++|++++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~a~~~i~ 77 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFS-VVVLVDGKPVRLQLCDTAGQDEFDKL--RPLCYPDTDVFLL 77 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCEEEEEEEEECCCChhhccc--cccccCCCcEEEE
Confidence 58999999999999999999998888777776643333 34666655678899999999999888 7788999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-ccC
Q 008219 509 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-VLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~~~ 572 (573)
|||++++.||+.+. .|+..+..... ++|+++|+||+|+... .+..+++..+++++++ .|+
T Consensus 78 v~d~~~~~sf~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 152 (173)
T cd04130 78 CFSVVNPSSFQNISEKWIPEIRKHNP----KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYI 152 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEE
Confidence 99999999999985 68877765432 7999999999999642 2456788999998887 554
No 219
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.83 E-value=3.6e-21 Score=165.78 Aligned_cols=168 Identities=17% Similarity=0.253 Sum_probs=141.9
Q ss_pred CCCCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhc
Q 008219 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELR 85 (573)
Q Consensus 8 ~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (573)
+.......-+|++|+|..+|||||++.+++.+-|...+..+.+..- ....+..++++..+|||+|++++......+++
T Consensus 12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr 91 (246)
T KOG4252|consen 12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR 91 (246)
T ss_pred CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 4444556679999999999999999999999999888776665543 44555677888999999999999999999999
Q ss_pred cCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCC
Q 008219 86 RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (573)
Q Consensus 86 ~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (573)
+|.+.++||+.+++.||+...+ |.+.++..+..+|.++|-||+|+.++ ..+... ..+.+++.+.. .++.+|++..
T Consensus 92 gaqa~vLVFSTTDr~SFea~~~-w~~kv~~e~~~IPtV~vqNKIDlved-s~~~~~-evE~lak~l~~--RlyRtSvked 166 (246)
T KOG4252|consen 92 GAQASVLVFSTTDRYSFEATLE-WYNKVQKETERIPTVFVQNKIDLVED-SQMDKG-EVEGLAKKLHK--RLYRTSVKED 166 (246)
T ss_pred cccceEEEEecccHHHHHHHHH-HHHHHHHHhccCCeEEeeccchhhHh-hhcchH-HHHHHHHHhhh--hhhhhhhhhh
Confidence 9999999999999999999996 99999998889999999999999986 334333 34566666653 7899999999
Q ss_pred CCchhHHHHHHHHHh
Q 008219 166 IQVPEVFYYAQKAVL 180 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~ 180 (573)
.|+..+|..++..+.
T Consensus 167 ~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 167 FNVMHVFAYLAEKLT 181 (246)
T ss_pred hhhHHHHHHHHHHHH
Confidence 999999999988654
No 220
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.83 E-value=7.9e-20 Score=168.45 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=112.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
.+.+||+|+|++|||||||++++.+..+....+ +.+..... +...+..+.+|||||+..+...+..+++.+|++++|
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~-t~g~~~~~--i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITP-TQGFNIKT--VQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCC-CCCcceEE--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 457999999999999999999999876543222 22222222 233467899999999888877788889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc------CeEEEecCCCCC
Q 008219 94 YACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI------ETCIECSALKQI 166 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~ 166 (573)
+|+++..++......+...++.. ..++|+++|+||+|+... ...++ +...++.. .++++|||++|.
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~----i~~~l~~~~~~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA---APAEE----IAEALNLHDLRDRTWHIQACSAKTGE 161 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC---CCHHH----HHHHcCCcccCCCeEEEEEeECCCCC
Confidence 99999888887765344443321 247999999999998764 11222 22222211 147899999999
Q ss_pred CchhHHHHHHH
Q 008219 167 QVPEVFYYAQK 177 (573)
Q Consensus 167 gi~~l~~~i~~ 177 (573)
|++++|+++.+
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999865
No 221
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.83 E-value=2.7e-20 Score=170.20 Aligned_cols=138 Identities=22% Similarity=0.365 Sum_probs=110.0
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHH-HhhhccccccccccEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV-AKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~-~~~~~~~~~~~~~d~vil 508 (573)
||+|+|++|||||||+++++++.+...+.++....+. ..+..++....+.+||++|++.+ ... ...+++.+|++++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~d~~i~ 77 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYS-RQVTIDGEQVSLEILDTAGQQQADTEQ--LERSIRWADGFVL 77 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhce-EEEEECCEEEEEEEEECCCCcccccch--HHHHHHhCCEEEE
Confidence 5899999999999999999998887666666554443 44555655668889999998752 333 4567899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCC-CCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGE-DTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.||+.+..|+..+..... .. ++|+++|+||+|+...+ +..++++++++.++++||
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 141 (165)
T cd04146 78 VYSITDRSSFDEISQLKQLIREIKKRDR--EIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFF 141 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEE
Confidence 9999999999999999888776542 22 79999999999996544 556788899999888776
No 222
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.83 E-value=1.3e-19 Score=189.18 Aligned_cols=201 Identities=19% Similarity=0.202 Sum_probs=136.1
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhh--------
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADT--FPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGK-------- 79 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~-------- 79 (573)
..+..+||+++|+||||||||+|+|++.. ++..+++ +|+ ....+..++..+.+|||||+..+...
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pg---tTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~ 275 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKG---TTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEK 275 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC---cEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHH
Confidence 34678999999999999999999999875 4555665 333 33445556788999999998765432
Q ss_pred hHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEE
Q 008219 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIE 159 (573)
Q Consensus 80 ~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (573)
...+++.+|++++|+|++++.+++.. |+..+... ++|+++|+||+|+... .. ..+...++ .++++
T Consensus 276 ~~~~~~~aD~il~V~D~s~~~s~~~~---~l~~~~~~--~~piIlV~NK~Dl~~~----~~----~~~~~~~~--~~~~~ 340 (442)
T TIGR00450 276 SFKAIKQADLVIYVLDASQPLTKDDF---LIIDLNKS--KKPFILVLNKIDLKIN----SL----EFFVSSKV--LNSSN 340 (442)
T ss_pred HHHHHhhCCEEEEEEECCCCCChhHH---HHHHHhhC--CCCEEEEEECccCCCc----ch----hhhhhhcC--CceEE
Confidence 23578999999999999998877653 66655443 7899999999998643 11 12233333 26899
Q ss_pred ecCCCCCCchhHHHHHHHHHhCCC--------CCCcchhhh-hchhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhc
Q 008219 160 CSALKQIQVPEVFYYAQKAVLHPT--------GPLFDQESQ-ALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCF 230 (573)
Q Consensus 160 ~Sa~~~~gi~~l~~~i~~~~~~~~--------~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~ 230 (573)
+||++ .||+++++.+.+.+.... .......++ ....++...+.+...........++..++++.+.....
T Consensus 341 vSak~-~gI~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~r~~~~l~~a~~~l~~~~~~~~~~~~~el~a~~l~~a~~~l~ 419 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKINAFYSKERVELDDYLISSWQAMILLEKAIAQLQQFLSKLDRQLFLDMLVFHLREAINCLG 419 (442)
T ss_pred EEEec-CCHHHHHHHHHHHHHHHhcccccccccceEhHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 99998 599999988887663221 111112222 23455555665555544444455677777777776654
Q ss_pred C
Q 008219 231 N 231 (573)
Q Consensus 231 ~ 231 (573)
.
T Consensus 420 ~ 420 (442)
T TIGR00450 420 Q 420 (442)
T ss_pred H
Confidence 3
No 223
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.83 E-value=1.1e-19 Score=166.86 Aligned_cols=155 Identities=19% Similarity=0.228 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeecccccCCc-eeEEEEeCCCCccc----hhhhHh---hhccCC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDR-VPITIIDTPSSVED----RGKLGE---ELRRAD 88 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~Dt~G~~~~----~~~~~~---~~~~ad 88 (573)
.|+++|++|||||||+|+|.+.... ...+++.... ....+...+ ..+.+|||||+... ...... .+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVP-NLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCC-cceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999976542 2223221111 111223334 48999999997422 122222 345699
Q ss_pred EEEEEEeCCCc-ccHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCC
Q 008219 89 AVVLTYACDRP-ETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (573)
Q Consensus 89 ~il~v~D~~~~-~s~~~~~~~~~~~l~~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (573)
++++|+|++++ .+++.+.. |.+.+.... .++|+++|+||+|+.... ...+....+..... ..+++++||++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~~~~~~~~~~~~-~~~~~~~Sa~~ 155 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKT-IRNELELYNPELLEKPRIVVLNKIDLLDEE---ELFELLKELLKELW-GKPVFPISALT 155 (170)
T ss_pred EEEEEEecCCCCCHHHHHHH-HHHHHHHhCccccccccEEEEEchhcCCch---hhHHHHHHHHhhCC-CCCEEEEecCC
Confidence 99999999999 78888874 888887653 368999999999987651 12222223333321 23799999999
Q ss_pred CCCchhHHHHHHHH
Q 008219 165 QIQVPEVFYYAQKA 178 (573)
Q Consensus 165 ~~gi~~l~~~i~~~ 178 (573)
+.|++++++++.+.
T Consensus 156 ~~gi~~l~~~i~~~ 169 (170)
T cd01898 156 GEGLDELLRKLAEL 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999988753
No 224
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.83 E-value=1.2e-19 Score=190.74 Aligned_cols=201 Identities=21% Similarity=0.216 Sum_probs=137.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhh--------hHh
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGK--------LGE 82 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~ 82 (573)
.+..++|+++|.+|||||||+|+|++... +...+++...+ ....+..++.++.+|||||+.++... ...
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~-~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDV-IEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCccccc-EEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 35679999999999999999999998763 44555532211 22334456788999999998765432 224
Q ss_pred hhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecC
Q 008219 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (573)
Q Consensus 83 ~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (573)
+++.+|++++|+|++++.+++... .|.. ..++|+++|+||+|+... ... . ... ..+++++||
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~-~l~~-----~~~~piiiV~NK~DL~~~-~~~--~-------~~~--~~~~i~iSA 352 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDE-ILEE-----LKDKPVIVVLNKADLTGE-IDL--E-------EEN--GKPVIRISA 352 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHH-HHHh-----cCCCCcEEEEEhhhcccc-chh--h-------hcc--CCceEEEEe
Confidence 688999999999999988777543 2332 347899999999999764 111 1 111 137899999
Q ss_pred CCCCCchhHHHHHHHHHhCC-----CCCCcchhhhh-chhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCC
Q 008219 163 LKQIQVPEVFYYAQKAVLHP-----TGPLFDQESQA-LKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNS 232 (573)
Q Consensus 163 ~~~~gi~~l~~~i~~~~~~~-----~~~~~~~~~~~-~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~ 232 (573)
++|.|++++++.+.+.+... ........++. ...++...+.+.........+.++..++++.+.......
T Consensus 353 ktg~GI~~L~~~L~~~l~~~~~~~~~~~~~~~~R~~~~l~~a~~~l~~~~~~~~~~~~~~~~a~~l~~a~~~l~~i 428 (449)
T PRK05291 353 KTGEGIDELREAIKELAFGGFGGNQEGVFLTNARHLEALERALEHLERALEGLESGLPLELLAEDLRLALEALGEI 428 (449)
T ss_pred eCCCCHHHHHHHHHHHHhhccccccccceehHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876431 11222222222 445666666665555544445577777877777665443
No 225
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.83 E-value=1.2e-19 Score=165.47 Aligned_cols=154 Identities=21% Similarity=0.152 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCC-CCCCC-CCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADT---FPAN-VPPVL-PPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~---~~~~-~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
+.|+++|++|||||||+++|++.. +... .+++. ........+. .+..+.+|||||++.+......+++.+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP-SGKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec-CCcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 468999999999999999999643 2211 11111 1111112221 1578999999999888776677889999999
Q ss_pred EEEeCCCc---ccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhc-ccCeEEEecCCCCCC
Q 008219 92 LTYACDRP---ETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR-EIETCIECSALKQIQ 167 (573)
Q Consensus 92 ~v~D~~~~---~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~g 167 (573)
+|+|+++. ++.+. +..++... ..|+++|+||+|+..........+.........+ ...+++++||++|.|
T Consensus 80 ~V~d~~~~~~~~~~~~-----~~~~~~~~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREH-----LEILELLG-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHH-----HHHHHHhC-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 99999873 23222 22333331 3499999999999764110011111122222210 123899999999999
Q ss_pred chhHHHHHHH
Q 008219 168 VPEVFYYAQK 177 (573)
Q Consensus 168 i~~l~~~i~~ 177 (573)
++++++.+.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 226
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.83 E-value=8.8e-20 Score=165.14 Aligned_cols=133 Identities=18% Similarity=0.300 Sum_probs=106.0
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||+++++.+.+...+.++ ...+ ...+.+++....+.+|||+|++.. .+++.+|++++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~~-------~~~~~~~~~il 71 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPDA-------QFASWVDAVIF 71 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCch-------hHHhcCCEEEE
Confidence 48999999999999999999998887665444 3334 356777765667899999999642 24578999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc---cccchhhHHHHHHHcC-CccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS---FAMAIQDSTRVFTFLV-MVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~ 572 (573)
|||++++.||+.+..|+..+....... ++|+++||||+|+.. ..+..+++++++++.+ +.||
T Consensus 72 v~d~~~~~sf~~~~~~~~~i~~~~~~~--~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~ 137 (158)
T cd04103 72 VFSLENEASFQTVYNLYHQLSSYRNIS--EIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYY 137 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEE
Confidence 999999999999999999987764322 799999999999853 2355778888998764 7765
No 227
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.83 E-value=9.1e-20 Score=167.22 Aligned_cols=139 Identities=22% Similarity=0.325 Sum_probs=115.3
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|.+|||||||+++|.++.+...+.++.+..+ .+.+..++....+.+|||+|++.|..+ +..+++.++++++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~vl 78 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAM--RELYIKSGQGFLL 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhh--hHHHHhhCCEEEE
Confidence 6899999999999999999999998777777766544 455666656678899999999999988 8889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcC-CccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLV-MVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~-~~~~ 572 (573)
|||++++++|+.+..|...+....... ++|+++|+||+|+...+ ...++...+++.++ +++|
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~--~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKDSD--NVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFY 142 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCC--CCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEE
Confidence 999999999999999988876543222 79999999999997654 44567777888887 6665
No 228
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.83 E-value=1.7e-20 Score=165.86 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhh------hHhh--hccC
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADT-FPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGK------LGEE--LRRA 87 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~--~~~a 87 (573)
++|+++|.||||||||||+|++.+ .+.++|++.- ......+...+..+.++|+||....... ...+ ....
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv-~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTV-EKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSS-EEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCe-eeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 589999999999999999999987 3455787432 2245556666789999999997654322 2233 3689
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCC
Q 008219 88 DAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (573)
Q Consensus 88 d~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (573)
|++++|+|+++.+ .-. ++...+... ++|+++|+||+|.... +.... ....+.+.++. |++++||+++.|
T Consensus 80 D~ii~VvDa~~l~---r~l-~l~~ql~e~--g~P~vvvlN~~D~a~~-~g~~i--d~~~Ls~~Lg~--pvi~~sa~~~~g 148 (156)
T PF02421_consen 80 DLIIVVVDATNLE---RNL-YLTLQLLEL--GIPVVVVLNKMDEAER-KGIEI--DAEKLSERLGV--PVIPVSARTGEG 148 (156)
T ss_dssp SEEEEEEEGGGHH---HHH-HHHHHHHHT--TSSEEEEEETHHHHHH-TTEEE---HHHHHHHHTS---EEEEBTTTTBT
T ss_pred CEEEEECCCCCHH---HHH-HHHHHHHHc--CCCEEEEEeCHHHHHH-cCCEE--CHHHHHHHhCC--CEEEEEeCCCcC
Confidence 9999999987642 222 255566555 8999999999998765 22222 23456666763 899999999999
Q ss_pred chhHHHHH
Q 008219 168 VPEVFYYA 175 (573)
Q Consensus 168 i~~l~~~i 175 (573)
++++++.+
T Consensus 149 ~~~L~~~I 156 (156)
T PF02421_consen 149 IDELKDAI 156 (156)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99998864
No 229
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.83 E-value=1.6e-19 Score=164.21 Aligned_cols=139 Identities=17% Similarity=0.275 Sum_probs=114.9
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||+++|+++.+...+.++.+.......+...+....+.+||++|++.+..+ +..+++++|++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~~~~~~~~~~~i~ 78 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHAL--GPIYYRDADGAIL 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHh--hHHHhccCCEEEE
Confidence 48999999999999999999999887666666655555555666655568889999999988888 7788899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.+++.+..|+..+...... ++|+++|+||+|+...+ ...++..++++.+++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (162)
T cd04123 79 VYDITDADSFQKVKKWIKELKQMRGN---NISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHF 140 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 99999999999999999888776543 69999999999997544 345667778887777654
No 230
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.83 E-value=1.1e-19 Score=173.94 Aligned_cols=138 Identities=21% Similarity=0.329 Sum_probs=110.8
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCC-CCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccc-cccEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFS-DNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLA-ACDIA 506 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~-~~d~v 506 (573)
+||+++|++|||||||+++|+++.+. ..+.++++.++....+.+.+....+.+|||+|++.+ + ...+++ ++|++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~--~~~~~~~~ad~i 76 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--T--EDSCMQYQGDAF 76 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--H--HhHHhhcCCCEE
Confidence 48999999999999999999988876 566666665566677777766778899999999722 2 334556 99999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.||+.+..|+..+....... ++|+++|+||+|+...+ +..+++++++..++++|+
T Consensus 77 ilV~d~td~~S~~~~~~~~~~l~~~~~~~--~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~ 141 (221)
T cd04148 77 VVVYSVTDRSSFERASELRIQLRRNRQLE--DRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFI 141 (221)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEChhccccceecHHHHHHHHHHcCCeEE
Confidence 99999999999999999998887754322 79999999999997654 456677888888887765
No 231
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.82 E-value=2.8e-21 Score=166.47 Aligned_cols=141 Identities=18% Similarity=0.257 Sum_probs=128.9
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+|++|+|..+|||||+|++++.+-|...+..++++++....+.+.++..+..+|||+|+++|..+ +..||++|.+.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaI--tkAyyrgaqa~ 96 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAI--TKAYYRGAQAS 96 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHH--HHHHhccccce
Confidence 4589999999999999999999999999999999999998888888777778889999999999999 99999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccCC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLYK 573 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~k 573 (573)
+|||+.+|+.||+....|+..+..... .+|.|+|-||+|+.++. +...+++.+++++++.+|+
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~~----~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyR 160 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKETE----RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYR 160 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHhc----cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhh
Confidence 999999999999999999999887765 89999999999998765 5578889999999888764
No 232
>PLN03118 Rab family protein; Provisional
Probab=99.82 E-value=1.7e-19 Score=171.79 Aligned_cols=141 Identities=17% Similarity=0.245 Sum_probs=114.4
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+|+|++|||||||+++|+++.+. .+.++.+.++.+..+..++....+.+|||+|++.+..+ +..+++.+|++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d~~ 89 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTL--TSSYYRNAQGI 89 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHH--HHHHHhcCCEE
Confidence 3589999999999999999999998875 45566666676666777656678899999999999988 88899999999
Q ss_pred EEEEeCCChhhHHHHHH-HHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATE-LLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.+|..+.. |...+....... +.|+++|+||+|+...+ ...++...++++++++||
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~ 155 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQ--DCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFL 155 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccCccCHHHHHHHHHHcCCEEE
Confidence 99999999999999976 545554433222 78999999999997654 446777888888888765
No 233
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.82 E-value=1.2e-19 Score=175.70 Aligned_cols=141 Identities=18% Similarity=0.326 Sum_probs=110.7
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+|+|.+|||||||+++|+++.+...+.++.+ ++..+.+.+++....+.||||+|++.|..+ ...++..+|++|+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~--~~~~~~~ad~iIl 77 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAM--RRLSILTGDVFIL 77 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHH--HHHHhccCCEEEE
Confidence 4899999999999999999999998877766665 344456677755678889999999998887 7778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCC------CCCCCcEEEEEeCCCCcccc-cchhhHHHHHHH-cCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGED------TGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTF-LVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~------~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~-~~~~~~ 572 (573)
|||+++++||+.+..|+.++...... ...++|+|||+||+|+...+ +..+++.+++.. .++.+|
T Consensus 78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~ 149 (247)
T cd04143 78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYF 149 (247)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEE
Confidence 99999999999999999888654210 11279999999999997533 455666666543 234443
No 234
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.82 E-value=1.5e-19 Score=166.57 Aligned_cols=160 Identities=20% Similarity=0.274 Sum_probs=121.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
.++.+||+++|.+|+|||||+++|..+.+....|+ .+... ..+...++.+.+||.+|+..+...++.+++.+|++||
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT-~g~~~--~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISETIPT-IGFNI--EEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEE-SSEEE--EEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccccCcc-ccccc--ceeeeCcEEEEEEeccccccccccceeeccccceeEE
Confidence 36789999999999999999999997665443332 22222 2344567899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHH-HHhc--ccCeEEEecCCCCCCc
Q 008219 93 TYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIM-QQFR--EIETCIECSALKQIQV 168 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~Sa~~~~gi 168 (573)
|+|.++.+.+......+...+... ..++|+++++||+|+... ...++....+. ..+. ....++.|||.+|.|+
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~---~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA---MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS---STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EEecccceeecccccchhhhcchhhcccceEEEEeccccccCc---chhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 999999998888887666655532 247999999999998875 23333222211 2222 1226899999999999
Q ss_pred hhHHHHHHHH
Q 008219 169 PEVFYYAQKA 178 (573)
Q Consensus 169 ~~l~~~i~~~ 178 (573)
.+.++|+.+.
T Consensus 165 ~e~l~WL~~~ 174 (175)
T PF00025_consen 165 DEGLEWLIEQ 174 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 235
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.82 E-value=2.9e-19 Score=164.45 Aligned_cols=142 Identities=15% Similarity=0.244 Sum_probs=115.2
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||++++.+..+...+.++.+.++....+...+....+.+||++|++.+..+ +..+++++|++++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~~~~~~~~d~~i~ 78 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSL--GVAFYRGADCCVL 78 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhH--HHHHhcCCCEEEE
Confidence 48999999999999999999999887777777777777777777766667889999999988888 7888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCC-CCCCCCcEEEEEeCCCCccc-ccchhhHHHHHHHcC-CccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGE-DTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLV-MVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~-~~~~ 572 (573)
|||++++.+|+....|...+..... ....++|+++|+||+|+... ....++...+++..+ +++|
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 145 (172)
T cd01862 79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYF 145 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEE
Confidence 9999999999999888877655432 11127999999999999743 344566777888776 4443
No 236
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.81 E-value=1.1e-19 Score=161.76 Aligned_cols=135 Identities=21% Similarity=0.266 Sum_probs=95.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCc-----cchhhhHhhhccCCEEEE
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSV-----EDRGKLGEELRRADAVVL 92 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----~~~~~~~~~~~~ad~il~ 92 (573)
||+++|++|||||||+|+|++..+. +.++ ....+. -.+|||||+. .+.... ..++++|++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t-----~~~~~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vil 68 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKT-----QAVEYN-----DGAIDTPGEYVENRRLYSALI-VTAADADVIAL 68 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccc-----eeEEEc-----CeeecCchhhhhhHHHHHHHH-HHhhcCCEEEE
Confidence 8999999999999999999987652 2221 112221 1789999973 222222 35899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
|||++++.++... .|...+ ..|+++|+||+|+... ....+ ....+.+..+. .+++++||++|.|++++|
T Consensus 69 v~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~--~~~~~-~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 69 VQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEA--DVDIE-RAKELLETAGA-EPIFEISSVDEQGLEALV 137 (142)
T ss_pred EecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCc--ccCHH-HHHHHHHHcCC-CcEEEEecCCCCCHHHHH
Confidence 9999999988653 255432 3499999999998653 12222 22334444432 378999999999999999
Q ss_pred HHHH
Q 008219 173 YYAQ 176 (573)
Q Consensus 173 ~~i~ 176 (573)
+.+.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 8763
No 237
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.81 E-value=3.3e-19 Score=163.34 Aligned_cols=154 Identities=17% Similarity=0.116 Sum_probs=106.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee----eccccc-CCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR----LPEDFY-PDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
.|+|+|++|||||||+++|....+.....+. .+. ...... ..+..+.+|||||+..+...+..++..+|++++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~ 79 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGG--ITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAIL 79 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCC--eEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEE
Confidence 4899999999999999999988765542221 111 111221 246789999999998888888888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHH----HhcccCeEEEecCCCCCCc
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ----QFREIETCIECSALKQIQV 168 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi 168 (573)
|+|+++........ .+..++.. ++|+++|+||+|+.... ............. .++...+++++||++|.|+
T Consensus 80 v~d~~~~~~~~~~~--~~~~~~~~--~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (168)
T cd01887 80 VVAADDGVMPQTIE--AIKLAKAA--NVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI 154 (168)
T ss_pred EEECCCCccHHHHH--HHHHHHHc--CCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCH
Confidence 99998854332222 33344443 78999999999987541 1111111111111 1222237999999999999
Q ss_pred hhHHHHHHHH
Q 008219 169 PEVFYYAQKA 178 (573)
Q Consensus 169 ~~l~~~i~~~ 178 (573)
.++++++.+.
T Consensus 155 ~~l~~~l~~~ 164 (168)
T cd01887 155 DDLLEAILLL 164 (168)
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 238
>PLN00023 GTP-binding protein; Provisional
Probab=99.81 E-value=3.4e-19 Score=174.25 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=110.8
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eccccc-------------CCceeEEEEeCCCCc
Q 008219 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFY-------------PDRVPITIIDTPSSV 74 (573)
Q Consensus 10 ~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~-------------~~~~~~~i~Dt~G~~ 74 (573)
+......+||+|+|+.|||||||+++|+++.+...+.++.+... ..+.+. ...+.++||||+|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 44567789999999999999999999999988777666555432 222332 235789999999999
Q ss_pred cchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcC-------------CCCcEEEEEeCCCCCCCc--ccc-
Q 008219 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLE-------------VKVPVIVVGCKLDLRDEN--QQV- 138 (573)
Q Consensus 75 ~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~-------------~~~piilv~NK~D~~~~~--~~~- 138 (573)
.+..++..+++.+|++|+|||++++.+++++.. |++.+.... .++|++||+||+|+.... +.+
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~k-Wl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s 173 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSS 173 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccc
Confidence 999999999999999999999999999999985 999997642 258999999999997542 111
Q ss_pred -cHHHHHHHHHHHhc
Q 008219 139 -SLEQVMMPIMQQFR 152 (573)
Q Consensus 139 -~~~~~~~~~~~~~~ 152 (573)
...+....+++..+
T Consensus 174 ~~~~e~a~~~A~~~g 188 (334)
T PLN00023 174 GNLVDAARQWVEKQG 188 (334)
T ss_pred cccHHHHHHHHHHcC
Confidence 12344566666655
No 239
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.81 E-value=3.2e-19 Score=164.52 Aligned_cols=137 Identities=22% Similarity=0.360 Sum_probs=109.9
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||+++|+++.+...+.++....+. ..+..++....+.+|||+|++.+..+ +..+++++|++++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~il 77 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGGKQYLLGLYDTAGQEDYDRL--RPLSYPMTDVFLI 77 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEeCCCccccccc--ccccCCCCCEEEE
Confidence 48999999999999999999999987777666554443 34556645567789999999998887 7888999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-ccC
Q 008219 509 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-VLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~~~ 572 (573)
|||++++.+|+.+. .|+..+....+ ++|+++|+||+|+... .+..++++.+++++++ +||
T Consensus 78 v~~~~~~~s~~~~~~~~~~~l~~~~~----~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 152 (174)
T cd04135 78 CFSVVNPASFQNVKEEWVPELKEYAP----NVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYV 152 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEE
Confidence 99999999999996 57777665422 8999999999998643 2345778889988885 454
No 240
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.81 E-value=4.9e-19 Score=160.06 Aligned_cols=139 Identities=19% Similarity=0.366 Sum_probs=118.7
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||++++.+..+...+.++.+.+.....+...+....+.+||++|.+.+... ...+++++|++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~d~ii~ 78 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSI--TPSYYRGAHGAIL 78 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHH--HHHHhcCCCEEEE
Confidence 48999999999999999999999988887777777777777777655678899999999988887 7888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCc-ccccchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD-SFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~ 572 (573)
|+|++++.+++.+..|+..+...... +.|+++|+||+|+. ......++..+++++++++++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYAPE---NIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFF 140 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEEcccccccccccHHHHHHHHHHcCCeEE
Confidence 99999999999999999888876532 79999999999996 334557788888888777665
No 241
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.81 E-value=1.4e-19 Score=165.21 Aligned_cols=133 Identities=23% Similarity=0.220 Sum_probs=106.1
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 509 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv 509 (573)
.|+++|++|||||||+++|.++.+...+.++.+... ..+.++...+.+||++|++.+..+ +..+++++|++++|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad~ii~V 74 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKY--WKRYLSGSQGLIFV 74 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHH--HHHHHhhCCEEEEE
Confidence 389999999999999999999887777777766532 223335678999999999999888 88899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccch-----hhHHHHHHHcCCccC
Q 008219 510 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAI-----QDSTRVFTFLVMVLY 572 (573)
Q Consensus 510 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~ 572 (573)
||++++.+|.....|+..+....+ ++|+++|+||+|+...+... .++..++++.++.+|
T Consensus 75 ~D~t~~~s~~~~~~~l~~~~~~~~----~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 138 (164)
T cd04162 75 VDSADSERLPLARQELHQLLQHPP----DLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQ 138 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHhCCC----CCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEE
Confidence 999999999999999888865432 89999999999997654221 245666666666554
No 242
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.80 E-value=5.3e-19 Score=179.41 Aligned_cols=152 Identities=20% Similarity=0.200 Sum_probs=107.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCC-CCCCeeecccccCCceeEEEEeCCCCcc--chhh------hHhhh
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTF-PANVPP-VLPPTRLPEDFYPDRVPITIIDTPSSVE--DRGK------LGEEL 84 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~------~~~~~ 84 (573)
..++|+++|.||||||||+|+|++... +.+.++ |.+.+...+.+. ++..+.+|||+|+.. .... ....+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~-~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP-DGGEVLLTDTVGFIRDLPHELVAAFRATLEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC-CCceEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 458999999999999999999998763 333333 223333333332 456899999999732 1111 12358
Q ss_pred ccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 85 RRADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 85 ~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
..||++++|+|++++.+...... |...++... .++|+++|+||+|+... . ........ ..++++|||+
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~~~~piIlV~NK~Dl~~~-~------~v~~~~~~---~~~~i~iSAk 335 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEA-VEKVLEELGAEDIPQLLVYNKIDLLDE-P------RIERLEEG---YPEAVFVSAK 335 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHH-HHHHHHHhccCCCCEEEEEEeecCCCh-H------hHHHHHhC---CCCEEEEEcc
Confidence 89999999999999988777653 666666543 37899999999998754 1 11111111 1268999999
Q ss_pred CCCCchhHHHHHHHH
Q 008219 164 KQIQVPEVFYYAQKA 178 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~ 178 (573)
+|.|++++++.+.+.
T Consensus 336 tg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 336 TGEGLDLLLEAIAER 350 (351)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999988653
No 243
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=9.9e-19 Score=175.86 Aligned_cols=158 Identities=20% Similarity=0.194 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeecccccC-CceeEEEEeCCCCccch----hh---hHhhhccC
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYP-DRVPITIIDTPSSVEDR----GK---LGEELRRA 87 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~----~~---~~~~~~~a 87 (573)
..|+|||.||||||||+|+|++.+. +.++|.+.-.. ....+.. +...+.+|||||+.+.. .+ .-.+++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p-~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHP-NLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCc-eEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 3599999999999999999997653 23355421111 1122222 45679999999985422 12 22467789
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCC
Q 008219 88 DAVVLTYACDRPETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (573)
Q Consensus 88 d~il~v~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (573)
+++++|+|+++..+++.+.. |..++..+. .++|+++|+||+|+... .... .+.........+ .++++|||++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~-~~~EL~~~~~~L~~kp~IIV~NKiDL~~~-~~~~-~~~~~~~~~~~~--~~i~~iSAkt 312 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKT-IRNELEKYSPELADKPRILVLNKIDLLDE-EEER-EKRAALELAALG--GPVFLISAVT 312 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHH-HHHHHHHhhhhcccCCeEEEEECcccCCc-hhHH-HHHHHHHHHhcC--CCEEEEEcCC
Confidence 99999999999888888874 989887764 37899999999998764 1111 111222223332 3799999999
Q ss_pred CCCchhHHHHHHHHHh
Q 008219 165 QIQVPEVFYYAQKAVL 180 (573)
Q Consensus 165 ~~gi~~l~~~i~~~~~ 180 (573)
+.|++++++.+.+.+.
T Consensus 313 g~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 313 GEGLDELLRALWELLE 328 (335)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987653
No 244
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.80 E-value=1e-18 Score=160.38 Aligned_cols=140 Identities=19% Similarity=0.265 Sum_probs=113.1
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+++|++|||||||++++.++.+...+.++.+.+.....+...+....+.+||++|++.+... ...+++.+|++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~~~~~~~~d~~ 83 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSI--TQSYYRSANAL 83 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHhcCCCEE
Confidence 4589999999999999999999988877666666666666666777755668889999999888887 77889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCcc
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVL 571 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~ 571 (573)
++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ ......+.+.+....++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~---~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~ 146 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANN---KVITILVGNKIDLAERREVSQQRAEEFSDAQDMYY 146 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCeE
Confidence 9999999999999999999887665432 79999999999997544 33455566766655444
No 245
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.80 E-value=1.4e-18 Score=156.85 Aligned_cols=155 Identities=19% Similarity=0.250 Sum_probs=114.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeec--ccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP--EDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
.+||+++|.+|+|||||++++.+..+...+.++.+..... .......+.+.+|||||+..+........+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 4799999999999999999999988544433322222222 22323238899999999988888888889999999999
Q ss_pred EeCCCc-ccHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 94 YACDRP-ETLDELSTFWLPELRRLEV-KVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 94 ~D~~~~-~s~~~~~~~~~~~l~~~~~-~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
+|+... .++......|...+..... +.|+++|+||+|+.... ............+.. +++++||++|.|+.++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~-~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK----LKTHVAFLFAKLNGE-PIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch----hhHHHHHHHhhccCC-ceEEeecCCCCCHHHH
Confidence 999887 7776665446666665444 88999999999997641 222233334444433 7999999999999999
Q ss_pred HHHH
Q 008219 172 FYYA 175 (573)
Q Consensus 172 ~~~i 175 (573)
++.+
T Consensus 156 ~~~l 159 (161)
T TIGR00231 156 FKIV 159 (161)
T ss_pred HHHh
Confidence 9875
No 246
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.80 E-value=1.1e-18 Score=159.02 Aligned_cols=139 Identities=21% Similarity=0.318 Sum_probs=114.1
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||++++++..+...+.++....+. .....++....+.+||++|++.+..+ +..+++.+|++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~~i~ 77 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEDVQLNILDTAGQEDYAAI--RDNYHRSGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEE-EEEEECCEEEEEEEEECCChhhhhHH--HHHHhhcCCEEEE
Confidence 48999999999999999999999887766666554443 44555656678999999999998888 7889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-ccchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~ 572 (573)
|||++++.+|.....|+..+....... ++|+++|+||+|+... .....+...++++++++++
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04139 78 VFSITDMESFTATAEFREQILRVKDDD--NVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYV 140 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEccccccccccCHHHHHHHHHHhCCeEE
Confidence 999999999999999998887764333 8999999999999763 3455667778888887765
No 247
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.80 E-value=1.2e-18 Score=165.10 Aligned_cols=154 Identities=20% Similarity=0.218 Sum_probs=106.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCC-CCCC-CCCCCeeecccccCCceeEEEEeCCCCccch--hh------hHhh
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFP-ANVP-PVLPPTRLPEDFYPDRVPITIIDTPSSVEDR--GK------LGEE 83 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~------~~~~ 83 (573)
...++|+|+|++|||||||+|++++..+. ...+ ++.........+. +...+.+|||||+.... .. ....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP-DGREVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec-CCceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 34589999999999999999999987642 2222 1111222222222 23489999999974321 11 1123
Q ss_pred hccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecC
Q 008219 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (573)
Q Consensus 84 ~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (573)
+..+|++++|+|++++.++..... |.+.++... .++|+++|+||+|+.... .. . ..... ...+++++||
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~~~~~~~viiV~NK~Dl~~~~-~~--~----~~~~~--~~~~~~~~Sa 187 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIET-VEKVLKELGAEDIPMILVLNKIDLLDDE-EL--E----ERLEA--GRPDAVFISA 187 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHH-HHHHHHHcCcCCCCEEEEEEccccCChH-HH--H----HHhhc--CCCceEEEEc
Confidence 678999999999999888877653 777776644 468999999999997651 11 1 11121 1237999999
Q ss_pred CCCCCchhHHHHHHHH
Q 008219 163 LKQIQVPEVFYYAQKA 178 (573)
Q Consensus 163 ~~~~gi~~l~~~i~~~ 178 (573)
++|.|++++++++...
T Consensus 188 ~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 188 KTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999988764
No 248
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.79 E-value=1.6e-18 Score=166.31 Aligned_cols=166 Identities=30% Similarity=0.447 Sum_probs=127.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee--cccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL--PEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
..+||+++|++|||||||+++|.++.+...++++.+.-.. ........+.+.+|||+|++++...+..++..++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 3499999999999999999999999998876654333221 11122226789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcc-----------cccHHHHHHHHHHH-hcccCeEEE
Q 008219 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQ-----------QVSLEQVMMPIMQQ-FREIETCIE 159 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~ 159 (573)
|+|.++..++......|...++..+ .+.|+++|+||+|+..... .............. .... .+++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 162 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANP-ALLE 162 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccc-ceeE
Confidence 9999998888887778999998877 3799999999999987621 11111111111111 1122 3899
Q ss_pred ecCC--CCCCchhHHHHHHHHHhC
Q 008219 160 CSAL--KQIQVPEVFYYAQKAVLH 181 (573)
Q Consensus 160 ~Sa~--~~~gi~~l~~~i~~~~~~ 181 (573)
+|++ .+.++.+++..+.+.+..
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHH
Confidence 9999 999999999999887654
No 249
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.79 E-value=1.1e-18 Score=159.84 Aligned_cols=128 Identities=20% Similarity=0.195 Sum_probs=99.9
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
+.+||+++|.+|||||||+++|..+.+.. +.++.+.+.. .+.. ....+.+|||+|++.+..+ +..+++++|++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~--~~~~~~~a~~i 80 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPL--WRHYYTGTQGL 80 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHH--HHHHhccCCEE
Confidence 35899999999999999999999877653 4455554432 2332 4578999999999999888 88899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHH
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVF 564 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 564 (573)
++|||++++.+|..+..|+.++....... ++|++||+||+|+.. .+..+++++++
T Consensus 81 i~v~D~t~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~~~~~i~~~~ 135 (168)
T cd04149 81 IFVVDSADRDRIDEARQELHRIINDREMR--DALLLVFANKQDLPD-AMKPHEIQEKL 135 (168)
T ss_pred EEEEeCCchhhHHHHHHHHHHHhcCHhhc--CCcEEEEEECcCCcc-CCCHHHHHHHc
Confidence 99999999999999999887776542212 799999999999865 23344555443
No 250
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.79 E-value=2e-18 Score=161.29 Aligned_cols=158 Identities=18% Similarity=0.132 Sum_probs=110.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--------------Cee--ecccccCCceeEEEEeCCCCccchhhhH
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP--------------PTR--LPEDFYPDRVPITIIDTPSSVEDRGKLG 81 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~--------------~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (573)
+|+|+|.+|+|||||+|+|++............ .+. ....+...+..+.+|||||+..+.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999998876544322110 011 1122334467899999999988888888
Q ss_pred hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhc---------
Q 008219 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR--------- 152 (573)
Q Consensus 82 ~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~--------- 152 (573)
.+++.+|++++|+|+++..+..... ++..+.. .++|+++|+||+|+..........+.........+
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTRE--HLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHH--HHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 8999999999999998766544332 5555554 38999999999999863111111122222222221
Q ss_pred ---ccCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 153 ---EIETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 153 ---~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
...+++++||++|.|++++++.+.+.+
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 134899999999999999999998864
No 251
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.79 E-value=1.8e-18 Score=160.18 Aligned_cols=157 Identities=22% Similarity=0.203 Sum_probs=102.4
Q ss_pred cccCCCCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCcc---------
Q 008219 5 SAANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVE--------- 75 (573)
Q Consensus 5 ~~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------- 75 (573)
+-...+.+..+..+|+|+|++|||||||+|+|++..+...+.++.++|.....+..+ ..+.+|||||...
T Consensus 7 ~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~ 85 (179)
T TIGR03598 7 AVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKE 85 (179)
T ss_pred eccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHH
Confidence 334455666788999999999999999999999876544433333344311112112 2689999999642
Q ss_pred -chhhhHhhhc---cCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHh
Q 008219 76 -DRGKLGEELR---RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF 151 (573)
Q Consensus 76 -~~~~~~~~~~---~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~ 151 (573)
+......+++ .+|++++|+|++++.+..... ++..+... ++|+++|+||+|+.... ........+...+
T Consensus 86 ~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~~~--~~pviiv~nK~D~~~~~---~~~~~~~~i~~~l 158 (179)
T TIGR03598 86 KWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLRER--GIPVLIVLTKADKLKKS---ELNKQLKKIKKAL 158 (179)
T ss_pred HHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCCHH---HHHHHHHHHHHHH
Confidence 1222234444 468999999998765555543 55566554 79999999999987541 1122223333333
Q ss_pred cc---cCeEEEecCCCCCCch
Q 008219 152 RE---IETCIECSALKQIQVP 169 (573)
Q Consensus 152 ~~---~~~~~~~Sa~~~~gi~ 169 (573)
+. ..+++++||++|.|++
T Consensus 159 ~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 159 KKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred hhccCCCceEEEECCCCCCCC
Confidence 32 2379999999999984
No 252
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=2e-18 Score=183.41 Aligned_cols=158 Identities=16% Similarity=0.128 Sum_probs=110.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeecccccCCceeEEEEeCCCCccc----------hhh-hH
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED----------RGK-LG 81 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~-~~ 81 (573)
..+||+|+|+||||||||+|+|++..+ +...+++.... ....+..++..+.+|||||+... ... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~-~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDP-VDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCc-ceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 468999999999999999999998874 33344432211 22223345667899999996421 111 12
Q ss_pred hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc--cCeEEE
Q 008219 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETCIE 159 (573)
Q Consensus 82 ~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 159 (573)
.+++.+|++++|+|++++.++.... ++..+... ++|+|+|+||+|+...... ......+...+.. ..++++
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~~~--~~piIiV~NK~Dl~~~~~~---~~~~~~i~~~l~~~~~~~~~~ 361 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR--VLSMVIEA--GRALVLAFNKWDLVDEDRR---YYLEREIDRELAQVPWAPRVN 361 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCChhHH---HHHHHHHHHhcccCCCCCEEE
Confidence 4678999999999999998888775 66666554 7999999999999754111 1111222223322 238999
Q ss_pred ecCCCCCCchhHHHHHHHHHh
Q 008219 160 CSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 160 ~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
|||++|.|++++|+.+.+.+.
T Consensus 362 ~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 362 ISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987653
No 253
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=2.5e-18 Score=155.49 Aligned_cols=146 Identities=19% Similarity=0.161 Sum_probs=102.7
Q ss_pred EEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchh--------hhHhhhccCCE
Q 008219 20 VVCGEKGTGKSSLIVTAAADT--FPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG--------KLGEELRRADA 89 (573)
Q Consensus 20 ~ivG~~~vGKSSLin~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ad~ 89 (573)
+++|.+|||||||+|+|++.. +....+++... .........+..+.+|||||+..+.. .....++.+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRD-RIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeC-ceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 589999999999999999875 33334432111 12223334567899999999887543 23456889999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
+++|+|+.+..+..... +...++.. ++|+++|+||+|+.... .. ......++ ..+++++||++|.|++
T Consensus 80 ii~v~d~~~~~~~~~~~--~~~~~~~~--~~piiiv~nK~D~~~~~------~~-~~~~~~~~-~~~~~~~Sa~~~~gv~ 147 (157)
T cd01894 80 ILFVVDGREGLTPADEE--IAKYLRKS--KKPVILVVNKVDNIKEE------DE-AAEFYSLG-FGEPIPISAEHGRGIG 147 (157)
T ss_pred EEEEEeccccCCccHHH--HHHHHHhc--CCCEEEEEECcccCChH------HH-HHHHHhcC-CCCeEEEecccCCCHH
Confidence 99999988765554432 55556554 69999999999998751 11 12223333 2368999999999999
Q ss_pred hHHHHHHHH
Q 008219 170 EVFYYAQKA 178 (573)
Q Consensus 170 ~l~~~i~~~ 178 (573)
++++++++.
T Consensus 148 ~l~~~l~~~ 156 (157)
T cd01894 148 DLLDAILEL 156 (157)
T ss_pred HHHHHHHhh
Confidence 999998864
No 254
>PRK00089 era GTPase Era; Reviewed
Probab=99.78 E-value=7.8e-18 Score=168.57 Aligned_cols=166 Identities=22% Similarity=0.299 Sum_probs=111.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchh--------hhHhhh
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRG--------KLGEEL 84 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 84 (573)
+.-.|+|+|+||||||||+|+|++.......+. ..+++ .......++..+.++||||...... .....+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~-~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPK-PQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCC-CCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 456799999999999999999999875433221 11222 2222334557899999999765432 223467
Q ss_pred ccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCC
Q 008219 85 RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (573)
Q Consensus 85 ~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (573)
..+|++++|+|+++..+ .....+.+.++.. +.|+++|+||+|+... . .........+...++ ..+++++||++
T Consensus 83 ~~~D~il~vvd~~~~~~--~~~~~i~~~l~~~--~~pvilVlNKiDl~~~-~-~~l~~~~~~l~~~~~-~~~i~~iSA~~ 155 (292)
T PRK00089 83 KDVDLVLFVVDADEKIG--PGDEFILEKLKKV--KTPVILVLNKIDLVKD-K-EELLPLLEELSELMD-FAEIVPISALK 155 (292)
T ss_pred hcCCEEEEEEeCCCCCC--hhHHHHHHHHhhc--CCCEEEEEECCcCCCC-H-HHHHHHHHHHHhhCC-CCeEEEecCCC
Confidence 89999999999988322 2223355555543 7899999999999843 1 122233344444333 34899999999
Q ss_pred CCCchhHHHHHHHHHhCCCCCCcch
Q 008219 165 QIQVPEVFYYAQKAVLHPTGPLFDQ 189 (573)
Q Consensus 165 ~~gi~~l~~~i~~~~~~~~~~~~~~ 189 (573)
+.|++++++.+.+.+. +.++.+..
T Consensus 156 ~~gv~~L~~~L~~~l~-~~~~~y~~ 179 (292)
T PRK00089 156 GDNVDELLDVIAKYLP-EGPPYYPE 179 (292)
T ss_pred CCCHHHHHHHHHHhCC-CCCCCCCC
Confidence 9999999999988653 23334443
No 255
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=4e-18 Score=170.97 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=121.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhh-----------
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGK----------- 79 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 79 (573)
..+||+|+|.||||||||+|+|++... +.+.+| +|+ +...+.+++.++.++||+|.......
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aG---TTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~r 253 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAG---TTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVAR 253 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCC---ccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehh
Confidence 579999999999999999999999874 444555 666 55566677899999999997643222
Q ss_pred hHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc--CeE
Q 008219 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI--ETC 157 (573)
Q Consensus 80 ~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 157 (573)
...++..+|++++|+|++.+.+-++.. ....+.+. +.++++|+||+|+... .....++....+...++.+ .+.
T Consensus 254 t~~aI~~a~vvllviDa~~~~~~qD~~--ia~~i~~~--g~~~vIvvNKWDl~~~-~~~~~~~~k~~i~~~l~~l~~a~i 328 (444)
T COG1160 254 TLKAIERADVVLLVIDATEGISEQDLR--IAGLIEEA--GRGIVIVVNKWDLVEE-DEATMEEFKKKLRRKLPFLDFAPI 328 (444)
T ss_pred hHhHHhhcCEEEEEEECCCCchHHHHH--HHHHHHHc--CCCeEEEEEccccCCc-hhhHHHHHHHHHHHHhccccCCeE
Confidence 236789999999999988776655554 77777776 8999999999998875 2333444444444555443 389
Q ss_pred EEecCCCCCCchhHHHHHHHHH
Q 008219 158 IECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 158 ~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
+.+||++|.|+.++|+.+....
T Consensus 329 ~~iSA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 329 VFISALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHH
Confidence 9999999999999999888754
No 256
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.78 E-value=2.8e-18 Score=155.63 Aligned_cols=138 Identities=17% Similarity=0.256 Sum_probs=112.8
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 509 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv 509 (573)
||+|+|++|||||||++++++..+...+.++.. ......+...+....+.+||++|.+.+..+ ....++.+|++++|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i~v 77 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAM--RDLYIRQGDGFILV 77 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHH--HHHHHhcCCEEEEE
Confidence 689999999999999999999887777666655 344445555544568889999999988887 77888999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 510 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 510 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
||+++++++..+..|+..+....... ++|+++|+||+|+...+ ...+++..++++++++++
T Consensus 78 ~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 139 (160)
T cd00876 78 YSITDRESFEEIKGYREQILRVKDDE--DIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFI 139 (160)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECCcccccceecHHHHHHHHHHcCCcEE
Confidence 99999999999999988877654422 79999999999997633 556788888888876664
No 257
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=7.7e-18 Score=172.76 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=109.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCee--ecccccCC-ceeEEEEeCCCCccchh-------hhHhhhcc
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTR--LPEDFYPD-RVPITIIDTPSSVEDRG-------KLGEELRR 86 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~--~~~~~~~~-~~~~~i~Dt~G~~~~~~-------~~~~~~~~ 86 (573)
.|+|||.||||||||+|+|++.+. +..+|. +|+ ....+... ...+.++||||+..... ....+++.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~---TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPF---TTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCC---CccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 699999999999999999998663 333454 333 22223333 45699999999864221 12256899
Q ss_pred CCEEEEEEeCC---CcccHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEe
Q 008219 87 ADAVVLTYACD---RPETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIEC 160 (573)
Q Consensus 87 ad~il~v~D~~---~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (573)
+|++++|+|++ +...++... .|.+.+..+. .++|+++|+||+|+... ....+.+..+...++...+++++
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~-~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~---~el~~~l~~l~~~~~~~~~Vi~I 313 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENAR-IIINELEKYSPKLAEKPRWLVFNKIDLLDE---EEAEERAKAIVEALGWEGPVYLI 313 (390)
T ss_pred CCEEEEEeccCcccccChHHHHH-HHHHHHHhhhhhhcCCCEEEEEeCCccCCh---HHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999988 445566655 4888877654 36899999999998754 11223333444444322268999
Q ss_pred cCCCCCCchhHHHHHHHHHh
Q 008219 161 SALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 161 Sa~~~~gi~~l~~~i~~~~~ 180 (573)
||+++.|++++++.+.+.+.
T Consensus 314 SA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 314 SAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred ECCCCcCHHHHHHHHHHHhh
Confidence 99999999999999988653
No 258
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.78 E-value=3.9e-18 Score=157.42 Aligned_cols=134 Identities=19% Similarity=0.281 Sum_probs=107.9
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
.||+|+|++|||||||+++|.++.+...+.++.+..+. ..+...+....+.+|||+|++.+..+ +..+++++|++++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~i~ 78 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRL--RPLSYPDTDVILM 78 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhc--cccccCCCCEEEE
Confidence 48999999999999999999999988777777765554 34556655668899999999998887 7778899999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-------------cchhhHHHHHHHcCC
Q 008219 509 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-------------MAIQDSTRVFTFLVM 569 (573)
Q Consensus 509 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~ 569 (573)
|||+++++||+.+. .|+..+..... ++|+++|+||+|+.... +...+++++++.++.
T Consensus 79 v~~~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~ 149 (175)
T cd01870 79 CFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGA 149 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCC
Confidence 99999999999986 57777765433 79999999999986421 224567777877663
No 259
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.78 E-value=3.4e-18 Score=160.55 Aligned_cols=149 Identities=19% Similarity=0.192 Sum_probs=101.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCCCCCCC------------CCCCCee--ecccccCCceeEEEEeCCCCccchhhhH
Q 008219 18 RIVVCGEKGTGKSSLIVTAAA--DTFPANVP------------PVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLG 81 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~--~~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (573)
+|+++|++|||||||+++|+. +.+..... .+.+.+. ....+.++++.+.+|||||++.+.....
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999997 44443321 0011111 2233456678999999999999999999
Q ss_pred hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhc----c-cCe
Q 008219 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR----E-IET 156 (573)
Q Consensus 82 ~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~----~-~~~ 156 (573)
.+++.+|++++|+|+++.. +.... .|+..+... ++|+++|+||+|+... +.....+....+...++ . -.+
T Consensus 84 ~~~~~~d~~ilV~d~~~~~-~~~~~-~~~~~~~~~--~~p~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGP-MPQTR-FVLKKALEL--GLKPIVVINKIDRPDA-RPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHhcCEEEEEEECCCCc-cHHHH-HHHHHHHHc--CCCEEEEEECCCCCCC-CHHHHHHHHHHHHHHhCCccccCccC
Confidence 9999999999999998743 22222 244444443 7899999999999754 11111222223322221 1 127
Q ss_pred EEEecCCCCCCchhH
Q 008219 157 CIECSALKQIQVPEV 171 (573)
Q Consensus 157 ~~~~Sa~~~~gi~~l 171 (573)
++++||++|.|+.++
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999888554
No 260
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.78 E-value=4e-18 Score=171.42 Aligned_cols=155 Identities=22% Similarity=0.268 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeecccccC-CceeEEEEeCCCCccch----hhh---HhhhccC
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYP-DRVPITIIDTPSSVEDR----GKL---GEELRRA 87 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~----~~~---~~~~~~a 87 (573)
..|+|||.||||||||+|+|++... +.++|.+.-.... ..+.. +...+.||||||+.+.. .+. ..+++.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~i-g~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNL-GVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEE-EEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4699999999999999999998653 3334442211111 12222 34789999999985422 222 2446689
Q ss_pred CEEEEEEeCCCc---ccHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEec
Q 008219 88 DAVVLTYACDRP---ETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (573)
Q Consensus 88 d~il~v~D~~~~---~s~~~~~~~~~~~l~~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (573)
|++++|+|+++. .+++.+.. |.+++..+. .++|+++|+||+|+... ...++....+...++ .+++++|
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~-l~~EL~~~~~~l~~kp~IIV~NK~DL~~~---~~~~~~~~~l~~~~~--~~vi~iS 310 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEI-IRNELKKYSPELAEKPRIVVLNKIDLLDE---EELAELLKELKKALG--KPVFPIS 310 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHH-HHHHHHHhhhhhccCCEEEEEeCccCCCh---HHHHHHHHHHHHHcC--CcEEEEE
Confidence 999999999987 56777764 888776653 37899999999999765 122333344444443 2799999
Q ss_pred CCCCCCchhHHHHHHHH
Q 008219 162 ALKQIQVPEVFYYAQKA 178 (573)
Q Consensus 162 a~~~~gi~~l~~~i~~~ 178 (573)
|+++.|++++++.+.+.
T Consensus 311 Aktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 311 ALTGEGLDELLYALAEL 327 (329)
T ss_pred ccCCcCHHHHHHHHHHH
Confidence 99999999999998764
No 261
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.78 E-value=3e-18 Score=155.19 Aligned_cols=146 Identities=18% Similarity=0.168 Sum_probs=101.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeecccccCCceeEEEEeCCCCccchh------hhHhhh--ccCCEEE
Q 008219 21 VCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG------KLGEEL--RRADAVV 91 (573)
Q Consensus 21 ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~ad~il 91 (573)
|+|++|||||||+|++++..+. ..++++.... ....+...+..+.+|||||+..+.. ....++ ..+|+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEK-KEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCccccc-ceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE
Confidence 5899999999999999987633 2234322111 1122334457899999999876653 234455 4999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
+|+|+++..... .|...+... ++|+++|+||+|+... .... .....+...++ .+++++||++|.|+.++
T Consensus 80 ~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~-~~~~--~~~~~~~~~~~--~~~~~iSa~~~~~~~~l 148 (158)
T cd01879 80 NVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEK-RGIK--IDLDKLSELLG--VPVVPTSARKGEGIDEL 148 (158)
T ss_pred EEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhccc-ccch--hhHHHHHHhhC--CCeEEEEccCCCCHHHH
Confidence 999998754422 245455444 7999999999999765 1121 22234445554 27999999999999999
Q ss_pred HHHHHHH
Q 008219 172 FYYAQKA 178 (573)
Q Consensus 172 ~~~i~~~ 178 (573)
++.+.+.
T Consensus 149 ~~~l~~~ 155 (158)
T cd01879 149 KDAIAEL 155 (158)
T ss_pred HHHHHHH
Confidence 9988764
No 262
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.78 E-value=3.2e-18 Score=158.78 Aligned_cols=139 Identities=15% Similarity=0.252 Sum_probs=111.5
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
.||+++|.+|||||||+++|.+..+...+.++....+ ...+...+....+.+|||+|++.+..+ +..++..++++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i~ 78 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSIL--PQKYSIGIHGYIL 78 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHH--HHHHHhhCCEEEE
Confidence 4899999999999999999999887766666554433 344556645567889999999988887 7788899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|||+++..+|+.+..|+..+....... +.|+++|+||+|+...+ ...++...++++++.+++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (180)
T cd04137 79 VYSVTSRKSFEVVKVIYDKILDMLGKE--SVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFL 141 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEE
Confidence 999999999999999988877754333 78999999999997544 334566778888776654
No 263
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.78 E-value=3.9e-18 Score=157.36 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=95.0
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+++|.+|||||||+++|..+.+. .+.+|.+.... .+.. ....+.+|||+|++.+..+ +..++++||++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~--~~~~~~~ad~i 84 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPL--WRHYYTNTQGL 84 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHH--HHHHhCCCCEE
Confidence 3589999999999999999999877764 34566554432 2333 3578899999999999888 88899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
++|||++++.+|+....|+..+....... ++|++||+||+|+..
T Consensus 85 i~v~D~t~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~ 128 (175)
T smart00177 85 IFVVDSNDRDRIDEAREELHRMLNEDELR--DAVILVFANKQDLPD 128 (175)
T ss_pred EEEEECCCHHHHHHHHHHHHHHhhCHhhc--CCcEEEEEeCcCccc
Confidence 99999999999999999988876532111 789999999999975
No 264
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.78 E-value=4e-18 Score=157.95 Aligned_cols=131 Identities=18% Similarity=0.178 Sum_probs=101.5
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+++|.+|||||||++++..+.+. .+.++.+... ..+.. ....+.+||++|++.+..+ +..+++++|++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~--~~~~~~i~D~~Gq~~~~~~--~~~~~~~a~~i 88 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQGL 88 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEE--CCEEEEEEECCCCHHHHHH--HHHHhccCCEE
Confidence 3479999999999999999999987775 3456655433 33333 4578999999999999988 88999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCc
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMV 570 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 570 (573)
|+|||++++++|..+..++..+....... ++|++||+||+|+.... ...++.+.+++.
T Consensus 89 I~V~D~s~~~s~~~~~~~l~~~l~~~~~~--~~piilv~NK~Dl~~~~----~~~~~~~~l~l~ 146 (181)
T PLN00223 89 IFVVDSNDRDRVVEARDELHRMLNEDELR--DAVLLVFANKQDLPNAM----NAAEITDKLGLH 146 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhcCHhhC--CCCEEEEEECCCCCCCC----CHHHHHHHhCcc
Confidence 99999999999999988887775432112 79999999999997532 234455555543
No 265
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.78 E-value=4.7e-18 Score=162.36 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=115.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+++|++|||||||+++++.+.+...+.++.+..+....+...++...+.+|||+|++.+..+ +..++..+++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~--~~~~~~~~~~ 84 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGL--RDGYYIKGQC 84 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhh--hHHHhccCCE
Confidence 45589999999999999999999988888788888887776666666667789999999999999887 7788899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.||..+..|+..+..... ++|+++|+||+|+....+. .+...+++..++.++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~i~lv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~ 146 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVCE----NIPIVLVGNKVDVKDRQVK-ARQITFHRKKNLQYY 146 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECccCccccCC-HHHHHHHHHcCCEEE
Confidence 9999999999999999999988876543 7999999999998653332 233456777776654
No 266
>PRK04213 GTP-binding protein; Provisional
Probab=99.78 E-value=2.4e-18 Score=162.68 Aligned_cols=153 Identities=21% Similarity=0.219 Sum_probs=99.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeecccccCCceeEEEEeCCCC-----------ccchhhhH
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSS-----------VEDRGKLG 81 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~~~~ 81 (573)
...++|+++|++|||||||+|+|.+..+... .++ .+.....+... .+.+|||||. +.+...+.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~---~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG---VTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc---eeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 3568999999999999999999998775433 333 23322222222 5899999994 23333333
Q ss_pred hhh----ccCCEEEEEEeCCCcccHH---------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHH
Q 008219 82 EEL----RRADAVVLTYACDRPETLD---------ELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIM 148 (573)
Q Consensus 82 ~~~----~~ad~il~v~D~~~~~s~~---------~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~ 148 (573)
.++ ..++++++|+|.+....+. .....+...+... ++|+++|+||+|+... . .+....+.
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~-~----~~~~~~~~ 154 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAVNKMDKIKN-R----DEVLDEIA 154 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEEECccccCc-H----HHHHHHHH
Confidence 333 3567888999876532220 0111234444433 7999999999998764 1 22334444
Q ss_pred HHhccc-------CeEEEecCCCCCCchhHHHHHHHHH
Q 008219 149 QQFREI-------ETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 149 ~~~~~~-------~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
..++.. .++++|||++| |++++++++.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 555421 15899999999 9999999998864
No 267
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.78 E-value=3.8e-18 Score=154.82 Aligned_cols=115 Identities=21% Similarity=0.212 Sum_probs=94.0
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|.+|||||||++++..+.+. .+.++.+... ..+.. ....+.+||++|++.+..+ +..++++||++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~--~~~~~--~~~~~~l~D~~G~~~~~~~--~~~~~~~ad~~i~ 73 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQGLIF 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEE--CCEEEEEEECCCCHhHHHH--HHHHhcCCCEEEE
Confidence 48999999999999999999887776 3556655443 23333 3578899999999999888 8889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
|||++++.+|..+..++..+....... +.|++||+||+|+..
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~ 115 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDELR--DAVLLVFANKQDLPN 115 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHHhc--CCCEEEEEECCCCCC
Confidence 999999999999999888776442222 689999999999965
No 268
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=9.6e-18 Score=154.19 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=107.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeecccccCCceeEEEEeCCCCccchh-----------hhHh
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFP--ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG-----------KLGE 82 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~ 82 (573)
.++|+++|++|+|||||+|+|++.... ...+++.... ....+..++..+.+|||||...... ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDS-IDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCc-eeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 579999999999999999999987632 2233321111 1223334556789999999754311 1124
Q ss_pred hhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc--cCeEEEe
Q 008219 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETCIEC 160 (573)
Q Consensus 83 ~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 160 (573)
++..+|++++|+|++++.+..... +...+... +.|+++|+||+|+... .....+.....+...++. ..+++++
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~~--~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLR--IAGLILEE--GKALVIVVNKWDLVEK-DSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHH--HHHHHHhc--CCCEEEEEeccccCCc-cHHHHHHHHHHHHhhcccccCCceEEE
Confidence 578999999999999987765543 44554443 7899999999998765 212233333444444432 2389999
Q ss_pred cCCCCCCchhHHHHHHHH
Q 008219 161 SALKQIQVPEVFYYAQKA 178 (573)
Q Consensus 161 Sa~~~~gi~~l~~~i~~~ 178 (573)
||+++.|++++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999988763
No 269
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.77 E-value=3.6e-18 Score=156.90 Aligned_cols=137 Identities=20% Similarity=0.289 Sum_probs=108.1
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||+++|.++.+...+.++....+. ..+...+....+.+||++|++.+..+ ....++.+|++++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~D~~g~~~~~~~--~~~~~~~~~~~i~ 77 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYS-ATVTVDGKQVNLGLWDTAGQEEYDRL--RPLSYPNTDVFLI 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEeCCCccccccc--chhhcCCCCEEEE
Confidence 58999999999999999999999886666565554333 34455556778999999999887776 6677899999999
Q ss_pred EEeCCChhhHHHHHH-HHHHHHhcCCCCCCCCcEEEEEeCCCCccccc------------chhhHHHHHHHcCC-ccC
Q 008219 509 VHDSSDESSWKRATE-LLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM------------AIQDSTRVFTFLVM-VLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------------~~~~~~~~~~~~~~-~~~ 572 (573)
|||++++.+|..... |+..+..... ++|+++|+||+|+..... ..+++.+++..+++ +||
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 151 (171)
T cd00157 78 CFSVDSPSSFENVKTKWIPEIRHYCP----NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYM 151 (171)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC----CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEE
Confidence 999999999988764 6666666543 799999999999976542 25667778888876 544
No 270
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.77 E-value=1e-18 Score=158.18 Aligned_cols=137 Identities=20% Similarity=0.335 Sum_probs=119.9
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcC-CCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
.+||+|||+.+||||+|+..+..+.|+..|.||....+... +.++ +....+-+|||+|++.|..+ +...|..+|++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-v~V~dg~~v~L~LwDTAGqedYDrl--RplsY~~tdvf 80 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-VTVDDGKPVELGLWDTAGQEDYDRL--RPLSYPQTDVF 80 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-EEecCCCEEEEeeeecCCCcccccc--cccCCCCCCEE
Confidence 47999999999999999999999999999999988666655 5663 67778899999999999987 67789999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcC-Ccc
Q 008219 507 VFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLV-MVL 571 (573)
Q Consensus 507 ilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~-~~~ 571 (573)
++||++.+++||+++ .+|+.++.++.+ ++|+||||+|.||..+ .+..++++++|+++| +.|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp----~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y 156 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCP----NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKY 156 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCC----CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCccee
Confidence 999999999999997 479999999986 8999999999999842 245788999999998 444
No 271
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.77 E-value=6.1e-18 Score=156.94 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=94.9
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+++|++|||||||++++..+.+.. +.+|.+.... .+.. ....+.+|||+|++.+..+ +..+++++|++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~--~~~~~~~ad~i 88 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPL--WRHYYQNTNGL 88 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHH--HHHHhcCCCEE
Confidence 34799999999999999999998877764 4456554432 3333 4578899999999999988 88899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
|+|||++++.+|.....++..+....... ++|++||+||.|+..
T Consensus 89 I~v~D~t~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 89 IFVVDSNDRERIGDAREELERMLSEDELR--DAVLLVFANKQDLPN 132 (182)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhCHhhc--CCCEEEEEeCCCCCC
Confidence 99999999999999988887775432112 789999999999865
No 272
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.77 E-value=4.8e-18 Score=160.08 Aligned_cols=118 Identities=23% Similarity=0.289 Sum_probs=99.1
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 509 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv 509 (573)
||+++|.+|||||||+++|+++.+...+.++... .....+.+.+....+.+||++|...+..+ +..++..+|++++|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--~~~~~~~ad~vilv 77 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGGVSLTLDILDTSGSYSFPAM--RKLSIQNSDAFALV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECCEEEEEEEEECCCchhhhHH--HHHHhhcCCEEEEE
Confidence 6899999999999999999999887766565543 33445566655568889999999988887 77788999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 510 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 510 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
||++++.+|+.+..|+..+....... ++|++||+||+|+..
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~NK~Dl~~ 118 (198)
T cd04147 78 YAVDDPESFEEVERLREEILEVKEDK--FVPIVVVGNKADSLE 118 (198)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEEcccccc
Confidence 99999999999999998887765433 799999999999965
No 273
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.77 E-value=8.5e-18 Score=156.28 Aligned_cols=120 Identities=24% Similarity=0.257 Sum_probs=97.4
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEc-CCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQ-PGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
.+||+++|.+|||||||++++.++.+... .++.+.......+.. ++....+.+|||+|++.+..+ +..+++++|++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d~i 79 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPL--WKSYTRCTDGI 79 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHH--HHHHhccCCEE
Confidence 47999999999999999999999887644 455554444333433 224568899999999999888 78889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
++|||++++.++..+..|+..+....... ++|+++|+||+|+..
T Consensus 80 i~v~D~~~~~~~~~~~~~~~~i~~~~~~~--~~p~iiv~NK~D~~~ 123 (183)
T cd04152 80 VFVVDSVDVERMEEAKTELHKITRFSENQ--GVPVLVLANKQDLPN 123 (183)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhhhcC--CCcEEEEEECcCccc
Confidence 99999999999999988888777654333 799999999999864
No 274
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.77 E-value=7e-18 Score=158.19 Aligned_cols=162 Identities=19% Similarity=0.146 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC----CCCC----CCCC-CCCeeecccc------------cCCceeEEEEeCCCCcc
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADT----FPAN----VPPV-LPPTRLPEDF------------YPDRVPITIIDTPSSVE 75 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~----~~~~----~~~~-~~~~~~~~~~------------~~~~~~~~i~Dt~G~~~ 75 (573)
++|+++|++|||||||+++|+... +... .+++ .........+ ...++.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999999731 1111 1111 1111111112 13367899999999865
Q ss_pred chhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-ccccHHHHHHHHHHHh---
Q 008219 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-QQVSLEQVMMPIMQQF--- 151 (573)
Q Consensus 76 ~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-~~~~~~~~~~~~~~~~--- 151 (573)
+..........+|++++|+|+++......... +. ..... ++|+++|+||+|+.... .....++....+...+
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 54444455678899999999987654443321 22 22223 67999999999987531 1111122112222222
Q ss_pred c-ccCeEEEecCCCCCCchhHHHHHHHHHhCC
Q 008219 152 R-EIETCIECSALKQIQVPEVFYYAQKAVLHP 182 (573)
Q Consensus 152 ~-~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 182 (573)
+ ...+++++||++|.|+++|++.+...+..|
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1 113799999999999999999998876554
No 275
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.76 E-value=6e-18 Score=153.01 Aligned_cols=140 Identities=21% Similarity=0.223 Sum_probs=96.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchh----hhHhhhccCCEEEEE
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG----KLGEELRRADAVVLT 93 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~~~~~~ad~il~v 93 (573)
+|+++|++|||||||+|+|.+..... . .+....+... .+|||||+..... .....++.+|++++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~-----~~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v 71 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--R-----KTQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYV 71 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--c-----cceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEE
Confidence 79999999999999999988653211 1 1111222222 2799999743222 122447899999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 94 YACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
+|+++..++... |+..+ ..++|+++|+||+|+... .. +....+.+..+...|++++||++|.|++++++
T Consensus 72 ~d~~~~~s~~~~---~~~~~---~~~~~ii~v~nK~Dl~~~----~~-~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 72 HGANDPESRLPA---GLLDI---GVSKRQIAVISKTDMPDA----DV-AATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EeCCCcccccCH---HHHhc---cCCCCeEEEEEccccCcc----cH-HHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 999988765331 33332 236899999999998653 12 22334445555334899999999999999999
Q ss_pred HHHHHH
Q 008219 174 YAQKAV 179 (573)
Q Consensus 174 ~i~~~~ 179 (573)
.+.+..
T Consensus 141 ~l~~~~ 146 (158)
T PRK15467 141 YLASLT 146 (158)
T ss_pred HHHHhc
Confidence 988754
No 276
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.76 E-value=1.4e-17 Score=142.29 Aligned_cols=162 Identities=14% Similarity=0.168 Sum_probs=119.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
.++++|.|+|..|+||||++++|.+... ....++.+..-. ....+++.+++||.+|+......+..|+..+|++|+|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~gf~Ik--tl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLGFQIK--TLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccceeeE--EEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 4589999999999999999999998763 233333332222 2335678999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHH--HHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 94 YACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLE--QVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
+|.+++..+++-...+...+... -.+.|+++++||.|+...-....+. -.++.+.+... .+.+.|||.+|+++.+
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~--~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH--WRLVKCSAVTGEDLLE 168 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC--ceEEEEeccccccHHH
Confidence 99999988877766444444321 1378999999999998652111122 22223322222 2899999999999999
Q ss_pred HHHHHHHHHh
Q 008219 171 VFYYAQKAVL 180 (573)
Q Consensus 171 l~~~i~~~~~ 180 (573)
-++++...+.
T Consensus 169 gidWL~~~l~ 178 (185)
T KOG0073|consen 169 GIDWLCDDLM 178 (185)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 277
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.76 E-value=6.5e-18 Score=155.66 Aligned_cols=129 Identities=19% Similarity=0.284 Sum_probs=99.1
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+++|++|||||||+++|.+..+. .+.++.+ +....+... ...+.+|||+|++.+..+ +..+++++|+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~--~~~l~l~D~~G~~~~~~~--~~~~~~~~d~ 84 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYE--GYKLNIWDVGGQKTLRPY--WRNYFESTDA 84 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEEC--CEEEEEEECCCCHHHHHH--HHHHhCCCCE
Confidence 34589999999999999999999988653 3345544 333444444 467899999999988887 7788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHH
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVF 564 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 564 (573)
+++|||++++.+|.....|+..+....... ++|+++|+||+|+.... ..++.+++.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~-~~~~~~~~~ 140 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLA--GATLLILANKQDLPGAL-SEEEIREAL 140 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECcccccCC-CHHHHHHHh
Confidence 999999999999999988888776532222 89999999999997532 233444443
No 278
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.76 E-value=2.7e-18 Score=147.74 Aligned_cols=113 Identities=34% Similarity=0.471 Sum_probs=85.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CC-CCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFP-AN-VPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~-~~-~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
||+|+|++|||||||+++|++..+. .. ...+.+.+. ...........+.+||++|.+.+.......+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 11 111111211 2223334455699999999988887777789999999999
Q ss_pred EeCCCcccHHHHHHH--HHHHHHhcCCCCcEEEEEeCCC
Q 008219 94 YACDRPETLDELSTF--WLPELRRLEVKVPVIVVGCKLD 130 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~--~~~~l~~~~~~~piilv~NK~D 130 (573)
||++++.+++.+.+. |+..++...+++|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999997643 6777777667899999999998
No 279
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.76 E-value=1.1e-17 Score=153.15 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=92.4
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||+++|.++.+...+. +...... ......+....+.+|||+|.+.+... ...+++.+|++++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~ad~~il 76 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVP-RVLPEIT-IPADVTPERVPTTIVDTSSRPQDRAN--LAAEIRKANVICL 76 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCC-CcccceE-eeeeecCCeEEEEEEeCCCchhhhHH--HhhhcccCCEEEE
Confidence 389999999999999999999998865543 2222222 22344446678899999999877766 5566799999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 509 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 509 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
|||++++.+|+.+. .|+..+..... ++|+++|+||+|+.+.+
T Consensus 77 v~d~~~~~s~~~~~~~~~~~i~~~~~----~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 77 VYSVDRPSTLERIRTKWLPLIRRLGV----KVPIILVGNKSDLRDGS 119 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhccccc
Confidence 99999999999985 57776665433 79999999999997654
No 280
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=2e-17 Score=175.00 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=112.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhh-----------h
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGK-----------L 80 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~ 80 (573)
...++|+++|.+|||||||+|+|++... ....+++.... ....+..++..+.+|||||+...... .
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~-~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDS-IDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECc-EeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 4568999999999999999999998763 33344422111 22233345568999999997654321 1
Q ss_pred HhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc--CeEE
Q 008219 81 GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI--ETCI 158 (573)
Q Consensus 81 ~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 158 (573)
..+++.+|++|+|+|++++.+..+.. ++..+... ++|+++|+||+|+... ....++....+...+... .+++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~~~--~~~iiiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR--IAGLILEA--GKALVIVVNKWDLVKD--EKTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH--HHHHHHHc--CCcEEEEEECcccCCC--HHHHHHHHHHHHHhcccCCCCceE
Confidence 24689999999999999887776654 66666554 7999999999999732 122233333344444322 3899
Q ss_pred EecCCCCCCchhHHHHHHHHHh
Q 008219 159 ECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 159 ~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
+|||++|.|++++++.+.+.+.
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988643
No 281
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.76 E-value=1.5e-17 Score=156.45 Aligned_cols=165 Identities=21% Similarity=0.205 Sum_probs=107.6
Q ss_pred cCCCCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCcc----------c
Q 008219 7 ANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVE----------D 76 (573)
Q Consensus 7 ~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~ 76 (573)
..++.......+|+++|++|||||||+|+|++..+...+.++.+.++.. .+...+..+.||||||... +
T Consensus 15 ~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~ 93 (196)
T PRK00454 15 KLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI-NFFEVNDKLRLVDLPGYGYAKVSKEEKEKW 93 (196)
T ss_pred cHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE-EEEecCCeEEEeCCCCCCCcCCCchHHHHH
Confidence 3445566678999999999999999999999877555544444444421 1112246899999999532 2
Q ss_pred hhhhHhhhcc---CCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc
Q 008219 77 RGKLGEELRR---ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE 153 (573)
Q Consensus 77 ~~~~~~~~~~---ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 153 (573)
......+++. ++++++|+|.+++.+.... .+...+... ++|+++|+||+|+..... .+.....+...+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~---~~~~~~~i~~~l~~ 166 (196)
T PRK00454 94 QKLIEEYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGE---RKKQLKKVRKALKF 166 (196)
T ss_pred HHHHHHHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHH---HHHHHHHHHHHHHh
Confidence 2233344444 4688899998776544332 234444443 789999999999876411 11111122222221
Q ss_pred -cCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 154 -IETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 154 -~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
..+++++||+++.|++++++.+.+.+
T Consensus 167 ~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 167 GDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 23789999999999999999887653
No 282
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.76 E-value=8.7e-18 Score=153.79 Aligned_cols=116 Identities=21% Similarity=0.243 Sum_probs=96.1
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 509 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv 509 (573)
+|+++|.+|||||||+++|.++ +...+.++.+.. ...+.. +...+.+||++|++.+..+ +..+++++|++++|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~--~~~~~~i~D~~G~~~~~~~--~~~~~~~a~~ii~V 73 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRL--DKYEVCIFDLGGGANFRGI--WVNYYAEAHGLVFV 73 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEE--CCEEEEEEECCCcHHHHHH--HHHHHcCCCEEEEE
Confidence 4899999999999999999987 555666666643 334444 3578899999999999988 88899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 510 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 510 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
||++++.+|+.+..|+..+....... ++|++||+||+|+...+
T Consensus 74 ~D~s~~~s~~~~~~~l~~l~~~~~~~--~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 74 VDSSDDDRVQEVKEILRELLQHPRVS--GKPILVLANKQDKKNAL 116 (167)
T ss_pred EECCchhHHHHHHHHHHHHHcCcccc--CCcEEEEEeCCCCcCCC
Confidence 99999999999999999887653322 79999999999997644
No 283
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.76 E-value=5.8e-18 Score=145.69 Aligned_cols=114 Identities=22% Similarity=0.298 Sum_probs=86.8
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCC--CCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFS--DNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
||+|+|++|||||||+++|++.... .......+.+..............+.+||++|++.+... ....+..+|+++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~d~~i 78 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ--HQFFLKKADAVI 78 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT--SHHHHHHSCEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc--ccchhhcCcEEE
Confidence 7999999999999999999998876 223334445555555666655567889999999888776 556689999999
Q ss_pred EEEeCCChhhHHHHHHH---HHHHHhcCCCCCCCCcEEEEEeCCC
Q 008219 508 FVHDSSDESSWKRATEL---LVEVASYGEDTGFEVPCLIVAAKDD 549 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~---~~~~~~~~~~~~~~~p~ilv~nK~D 549 (573)
+|||++++.||+++..+ +..+..... ++|++||+||.|
T Consensus 79 lv~D~s~~~s~~~~~~~~~~l~~~~~~~~----~~piilv~nK~D 119 (119)
T PF08477_consen 79 LVYDLSDPESLEYLSQLLKWLKNIRKRDK----NIPIILVGNKSD 119 (119)
T ss_dssp EEEECCGHHHHHHHHHHHHHHHHHHHHSS----CSEEEEEEE-TC
T ss_pred EEEcCCChHHHHHHHHHHHHHHHHHccCC----CCCEEEEEeccC
Confidence 99999999999998554 555554433 799999999998
No 284
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=2.8e-17 Score=169.33 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=109.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeecccccCC-ceeEEEEeCCCCccch----hhhH---hhhccCC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPD-RVPITIIDTPSSVEDR----GKLG---EELRRAD 88 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~----~~~~---~~~~~ad 88 (573)
.|++||.||||||||+|+|++.+.. .++|.+.-.... ..+... +..+.+|||||..... .+.. .+++.++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~Pnl-G~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNL-GVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEE-EEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 7999999999999999999987632 234442111111 122222 6789999999975422 1222 3466799
Q ss_pred EEEEEEeCCCc---ccHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecC
Q 008219 89 AVVLTYACDRP---ETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (573)
Q Consensus 89 ~il~v~D~~~~---~s~~~~~~~~~~~l~~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (573)
++|+|+|+++. ..+++.. .|.++|..+. .++|+++|+||+|+... .+....+.+.++ .+++++||
T Consensus 239 llI~VID~s~~~~~dp~e~~~-~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~--~~i~~iSA 309 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYE-KINKELKLYNPRLLERPQIVVANKMDLPEA------EENLEEFKEKLG--PKVFPISA 309 (424)
T ss_pred EEEEEEeCCccccCChHHHHH-HHHHHHhhhchhccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC--CcEEEEeC
Confidence 99999999865 5666665 4888887754 37899999999998433 223344555554 37999999
Q ss_pred CCCCCchhHHHHHHHHHh
Q 008219 163 LKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 163 ~~~~gi~~l~~~i~~~~~ 180 (573)
+++.|++++++.+.+.+.
T Consensus 310 ~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 310 LTGQGLDELLYAVAELLE 327 (424)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987654
No 285
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.76 E-value=1.6e-17 Score=150.11 Aligned_cols=145 Identities=22% Similarity=0.282 Sum_probs=104.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeecccccCCceeEEEEeCCCCccchhh--------hHhhhc
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFP--ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGK--------LGEELR 85 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~ 85 (573)
.++|+++|++|+|||||++++++.... ...+++.... ....+...+.++.+|||||..++... ....+.
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDV-IEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccce-EEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 368999999999999999999987642 3344322111 22334455778999999998655322 235678
Q ss_pred cCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCC
Q 008219 86 RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (573)
Q Consensus 86 ~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (573)
.+|++++|+|++++.+...... +.. ..++|+++|+||+|+..... . . ......+++++||+++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~-~~~-----~~~~~vi~v~nK~D~~~~~~-~--------~--~~~~~~~~~~~Sa~~~ 142 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEI-LEL-----PADKPIIVVLNKSDLLPDSE-L--------L--SLLAGKPIIAISAKTG 142 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHH-HHh-----hcCCCEEEEEEchhcCCccc-c--------c--cccCCCceEEEECCCC
Confidence 9999999999998887776552 222 34799999999999886511 1 1 1111238999999999
Q ss_pred CCchhHHHHHHHH
Q 008219 166 IQVPEVFYYAQKA 178 (573)
Q Consensus 166 ~gi~~l~~~i~~~ 178 (573)
.|++++++++.+.
T Consensus 143 ~~v~~l~~~l~~~ 155 (157)
T cd04164 143 EGLDELKEALLEL 155 (157)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999988764
No 286
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.75 E-value=1.2e-17 Score=153.24 Aligned_cols=126 Identities=22% Similarity=0.249 Sum_probs=99.1
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 509 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv 509 (573)
||+++|.+|||||||+++|.+..+.. +.+|.+.+. ..+.. ....+.+|||+|++.+..+ +..+++++|++++|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~--~~~~~--~~~~i~l~Dt~G~~~~~~~--~~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNV--ETVEY--KNLKFTIWDVGGKHKLRPL--WKHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeE--EEEEE--CCEEEEEEECCCChhcchH--HHHHhccCCEEEEE
Confidence 58999999999999999999987653 455554433 23333 4578899999999888877 77889999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHH
Q 008219 510 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT 565 (573)
Q Consensus 510 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 565 (573)
||++++.+|..+..|+..+....... +.|++||+||+|+.. .+..++.+++++
T Consensus 74 ~D~s~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~~~~~~~~~~~ 126 (169)
T cd04158 74 VDSSHRDRVSEAHSELAKLLTEKELR--DALLLIFANKQDVAG-ALSVEEMTELLS 126 (169)
T ss_pred EeCCcHHHHHHHHHHHHHHhcChhhC--CCCEEEEEeCcCccc-CCCHHHHHHHhC
Confidence 99999999999999998887643222 689999999999964 344555655553
No 287
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.75 E-value=2.8e-17 Score=149.86 Aligned_cols=156 Identities=24% Similarity=0.282 Sum_probs=106.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchh--------hhHhhh
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRG--------KLGEEL 84 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 84 (573)
...+|+++|.+|+|||||+|+|++.......+. ..+++ ....+...+..+.+|||||...... .....+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCC-CCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 467899999999999999999998764322111 11222 2223345567899999999765432 223458
Q ss_pred ccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCC
Q 008219 85 RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (573)
Q Consensus 85 ~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (573)
..+|++++|+|++++.+ .....+...+... +.|+++|+||+|+.... ....+....+....+ ..+++++|+++
T Consensus 81 ~~~d~i~~v~d~~~~~~--~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~-~~~~~~~s~~~ 153 (168)
T cd04163 81 KDVDLVLFVVDASEPIG--EGDEFILELLKKS--KTPVILVLNKIDLVKDK--EDLLPLLEKLKELGP-FAEIFPISALK 153 (168)
T ss_pred HhCCEEEEEEECCCccC--chHHHHHHHHHHh--CCCEEEEEEchhccccH--HHHHHHHHHHHhccC-CCceEEEEecc
Confidence 89999999999998722 2222355555554 68999999999998431 222333334444332 23899999999
Q ss_pred CCCchhHHHHHHHH
Q 008219 165 QIQVPEVFYYAQKA 178 (573)
Q Consensus 165 ~~gi~~l~~~i~~~ 178 (573)
+.|++++++.+.+.
T Consensus 154 ~~~~~~l~~~l~~~ 167 (168)
T cd04163 154 GENVDELLEEIVKY 167 (168)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999988653
No 288
>PRK11058 GTPase HflX; Provisional
Probab=99.75 E-value=2.5e-17 Score=170.90 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCC-CCCeeecccccCCceeEEEEeCCCCccc--hhhh------Hhhhcc
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTF-PANVPPV-LPPTRLPEDFYPDRVPITIIDTPSSVED--RGKL------GEELRR 86 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~~~------~~~~~~ 86 (573)
.+|+|+|.||||||||+|+|++... +.+.+++ .+.+.....+. +...+.+|||+|+... ...+ ...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~-~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA-DVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeC-CCCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 5899999999999999999998763 3334332 22222222232 2337899999998432 2222 244789
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCC
Q 008219 87 ADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (573)
Q Consensus 87 ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (573)
||++++|+|++++.+++.+.. |...+.... .++|+++|+||+|+... . ...... ...+ ...++++||++|
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~-~----~~~~~~--~~~~-~~~~v~ISAktG 347 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDD-F----EPRIDR--DEEN-KPIRVWLSAQTG 347 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCc-h----hHHHHH--HhcC-CCceEEEeCCCC
Confidence 999999999999988777653 444444432 37999999999998653 1 011111 1111 113588999999
Q ss_pred CCchhHHHHHHHHHh
Q 008219 166 IQVPEVFYYAQKAVL 180 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~ 180 (573)
.|++++++.+.+.+.
T Consensus 348 ~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 348 AGIPLLFQALTERLS 362 (426)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998764
No 289
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.75 E-value=1.4e-17 Score=153.68 Aligned_cols=151 Identities=23% Similarity=0.276 Sum_probs=100.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeecccccCC-ceeEEEEeCCCCccc----hh---hhHhhhccCCEEE
Q 008219 21 VCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYPD-RVPITIIDTPSSVED----RG---KLGEELRRADAVV 91 (573)
Q Consensus 21 ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~----~~---~~~~~~~~ad~il 91 (573)
|+|++|||||||+|+|++... ...++++.... ....+... +..+.+|||||+... .. .....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEP-NLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecC-cceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998764 23333321111 11223344 788999999997432 11 1234578899999
Q ss_pred EEEeCCCc------ccHHHHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeE
Q 008219 92 LTYACDRP------ETLDELSTFWLPELRRLE--------VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETC 157 (573)
Q Consensus 92 ~v~D~~~~------~s~~~~~~~~~~~l~~~~--------~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (573)
+|+|+++. .++..... |...+.... .++|+++|+||+|+... ... .+... .........++
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-~~~--~~~~~-~~~~~~~~~~~ 154 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA-EEL--EEELV-RELALEEGAEV 154 (176)
T ss_pred EEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch-hHH--HHHHH-HHHhcCCCCCE
Confidence 99999988 46666653 666665432 37999999999999765 111 11100 11112222379
Q ss_pred EEecCCCCCCchhHHHHHHH
Q 008219 158 IECSALKQIQVPEVFYYAQK 177 (573)
Q Consensus 158 ~~~Sa~~~~gi~~l~~~i~~ 177 (573)
+++||+++.|++++++.+.+
T Consensus 155 ~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 155 VPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred EEEehhhhcCHHHHHHHHHh
Confidence 99999999999999998865
No 290
>PTZ00099 rab6; Provisional
Probab=99.75 E-value=2.8e-17 Score=151.10 Aligned_cols=138 Identities=20% Similarity=0.259 Sum_probs=108.6
Q ss_pred CCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhc
Q 008219 39 DTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRL 116 (573)
Q Consensus 39 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~ 116 (573)
+.|.+.+.++.+... ..+.+....+.+.||||||++.+...+..+++.||++|+|||++++.+|+.+.. |+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~-w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHH-HHHHHHHh
Confidence 346666666555322 445666778999999999999999999999999999999999999999999974 88877553
Q ss_pred -CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHHHHHHHhC
Q 008219 117 -EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLH 181 (573)
Q Consensus 117 -~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 181 (573)
.++.|++||+||+|+... +.+..++. ..+...++. .+++|||++|.||+++|+++.+.+..
T Consensus 82 ~~~~~piilVgNK~DL~~~-~~v~~~e~-~~~~~~~~~--~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDL-RKVTYEEG-MQKAQEYNT--MFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred cCCCCeEEEEEECcccccc-cCCCHHHH-HHHHHHcCC--EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 357899999999999754 34544443 344555542 78999999999999999999987643
No 291
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.74 E-value=2.4e-17 Score=153.90 Aligned_cols=137 Identities=23% Similarity=0.301 Sum_probs=107.4
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
.||+|+|++|||||||+++|..+.+...+.++....+ ...+...+....+.+||++|++.+... ...+++.+|++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~--~~~~~~~a~~~ll 78 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERL--RPLSYSKAHVILI 78 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhcccc--chhhcCCCCEEEE
Confidence 4899999999999999999998887766655544333 334555545567889999999887766 5567899999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc----------c-cchhhHHHHHHHcCC-ccC
Q 008219 509 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF----------A-MAIQDSTRVFTFLVM-VLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------~-~~~~~~~~~~~~~~~-~~~ 572 (573)
|||+++.++|+.+. .|+..+....+ ++|+++||||+|+... + +..+++.++++++++ +||
T Consensus 79 v~~i~~~~s~~~~~~~~~~~i~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (187)
T cd04129 79 GFAVDTPDSLENVRTKWIEEVRRYCP----NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEE
Confidence 99999999999997 58888776543 7999999999998542 1 335678889998884 554
No 292
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.74 E-value=4.9e-18 Score=141.91 Aligned_cols=155 Identities=17% Similarity=0.274 Sum_probs=123.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
.++.+.++|-.++|||||+|....+.+....-++.+..- ..+..+.+.+.+||.||+..+..+++.+.+.++++++|+
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm--rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V 96 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV 96 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhccccccee--EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence 468899999999999999999998887776433333222 235567789999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc--c----CeEEEecCCCCCC
Q 008219 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--I----ETCIECSALKQIQ 167 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~Sa~~~~g 167 (573)
|+.+++.++...+++...+.+.. .++|+++.|||.|+.+. .+.. .+..+++- + ..+|.+||+...|
T Consensus 97 Daad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A---L~~~----~li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 97 DAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA---LSKI----ALIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred ecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc---ccHH----HHHHHhCccccccceEEEEEEEEcCCcc
Confidence 99999988888877777776643 58999999999999886 2222 22233321 1 2799999999999
Q ss_pred chhHHHHHHHH
Q 008219 168 VPEVFYYAQKA 178 (573)
Q Consensus 168 i~~l~~~i~~~ 178 (573)
|+.+.+++++.
T Consensus 170 id~~~~Wli~h 180 (186)
T KOG0075|consen 170 IDITLDWLIEH 180 (186)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 293
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.74 E-value=3.7e-17 Score=148.74 Aligned_cols=118 Identities=20% Similarity=0.171 Sum_probs=93.1
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCC-CCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPF-SDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+|+++|++|||||||+++|.+... ...+.++.+... ..+. .+...+.+|||+|.+.+..+ +..+++.+|++++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~--~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ii~ 74 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFE--KGNLSFTAFDMSGQGKYRGL--WEHYYKNIQGIIF 74 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEE--ECCEEEEEEECCCCHhhHHH--HHHHHccCCEEEE
Confidence 589999999999999999998753 444556665433 2232 24578899999999999888 8888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
|+|++++.+|.....|+..+.........++|+++|+||+|+...
T Consensus 75 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 75 VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 999999999999888888776532111127999999999999753
No 294
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.74 E-value=1.4e-17 Score=164.31 Aligned_cols=227 Identities=15% Similarity=0.106 Sum_probs=144.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC--CCe----------------eecccccCCceeEEEEeCCCCccchhh
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVL--PPT----------------RLPEDFYPDRVPITIIDTPSSVEDRGK 79 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~--~~~----------------~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 79 (573)
+|+|+|.+|+|||||+++|+.........+.. +.+ .....+.++++.+.+|||||..++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 48999999999999999998643222111100 000 011233456789999999998887777
Q ss_pred hHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEE
Q 008219 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIE 159 (573)
Q Consensus 80 ~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (573)
...+++.+|++++|+|+++........ .+..+... ++|+++|+||+|+... ...+....+...++...-.+.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~--~~~~~~~~--~~p~iivvNK~D~~~~----~~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEK--LWEFADEA--GIPRIIFINKMDRERA----DFDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECCccCCC----CHHHHHHHHHHHhCCCeEEEE
Confidence 888999999999999998875544332 33445444 7899999999998764 344555666666764334566
Q ss_pred ecCCCCCCchhHHHHHHHHHhCC-C-C-----CCcchhhhhchhhHHHHHHHHHHhccCCCCCccCchhhh-----HHhh
Q 008219 160 CSALKQIQVPEVFYYAQKAVLHP-T-G-----PLFDQESQALKPRCVRALKRIFILCDHDRDGALSDAELN-----DFQV 227 (573)
Q Consensus 160 ~Sa~~~~gi~~l~~~i~~~~~~~-~-~-----~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~el~-----~~q~ 227 (573)
++..+|.|+..+.+.+....... . . +................++.+....+...+.++.++++. ..-+
T Consensus 153 ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~ 232 (268)
T cd04170 153 LPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLR 232 (268)
T ss_pred ecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 77889999888887766544321 1 0 000011111112233344555555554444455444443 3333
Q ss_pred h----------hcCCCCChhHHHHHHHHHhhhccC
Q 008219 228 K----------CFNSPLQPSEIVGVKRVVQEKLRE 252 (573)
Q Consensus 228 ~----------~~~~~l~~~~i~~l~~~i~~~~~~ 252 (573)
+ +++.++...+++.+.+.+.+++|+
T Consensus 233 ~~~~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~ 267 (268)
T cd04170 233 RALRAGLLVPVLCGSALTNIGVRELLDALVHLLPS 267 (268)
T ss_pred HHHHhCCEEEEEEeeCCCCcCHHHHHHHHHHhCCC
Confidence 2 577888888888888888888774
No 295
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.74 E-value=5.3e-17 Score=149.70 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=94.0
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.+||+++|++|||||||++++.++.+.. ..++.+.+.. .+.. ....+.+||++|++.+... +..+++++|+++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~vi 87 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSS--WNTYYTNTDAVI 87 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHH--HHHHhhcCCEEE
Confidence 4799999999999999999999888764 3455554432 2333 3468899999999988887 778899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
+|+|++++++|.....++..+....... ++|+++|+||+|+..
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~--~~p~viv~NK~Dl~~ 130 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAHEDLR--KAVLLVLANKQDLKG 130 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhc--CCCEEEEEECCCCCC
Confidence 9999999999998888887776543222 799999999999865
No 296
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.73 E-value=5e-17 Score=147.61 Aligned_cols=115 Identities=26% Similarity=0.285 Sum_probs=93.4
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 509 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv 509 (573)
+|+++|++|||||||+++|.++.+... .++.+. ....+... +...+.+||++|++.+..+ +..+++.+|++++|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~--~~~~~~~~-~~~~l~i~D~~G~~~~~~~--~~~~~~~~~~iv~v 74 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGF--NVEMLQLE-KHLSLTVWDVGGQEKMRTV--WKCYLENTDGLVYV 74 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCc--ceEEEEeC-CceEEEEEECCCCHhHHHH--HHHHhccCCEEEEE
Confidence 589999999999999999999887643 355443 33444444 5578999999999988887 77789999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 510 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 510 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
+|++++.++.....|+..+....... +.|+++|+||+|+..
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 115 (160)
T cd04156 75 VDSSDEARLDESQKELKHILKNEHIK--GVPVVLLANKQDLPG 115 (160)
T ss_pred EECCcHHHHHHHHHHHHHHHhchhhc--CCCEEEEEECccccc
Confidence 99999999999999888876543222 899999999999864
No 297
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.73 E-value=7.1e-17 Score=150.72 Aligned_cols=159 Identities=23% Similarity=0.258 Sum_probs=110.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------------CC-CCCCeeeccccc--CCceeEEEEeCCC
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANV-------------------PP-VLPPTRLPEDFY--PDRVPITIIDTPS 72 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-------------------~~-~~~~~~~~~~~~--~~~~~~~i~Dt~G 72 (573)
+..+|+++|+.++|||||+++|+........ .+ +... ....+. .....+.++||||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~--~~~~~~~~~~~~~i~~iDtPG 79 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDL--SFISFEKNENNRKITLIDTPG 79 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSS--EEEEEEBTESSEEEEEEEESS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccc--ccccccccccccceeeccccc
Confidence 4578999999999999999999865421110 01 0111 122223 6678999999999
Q ss_pred CccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhc
Q 008219 73 SVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR 152 (573)
Q Consensus 73 ~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 152 (573)
+.++.......++.+|++|+|+|+.+....... ..+..++.. ++|+++|+||+|+.........++....+.+.++
T Consensus 80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~--~~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQTE--EHLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp SHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHH--HHHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccceeecccceecccccceeeeecccccccccc--ccccccccc--ccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 999888888899999999999998876443332 356666666 7899999999999843111111222223333332
Q ss_pred c----cCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 153 E----IETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 153 ~----~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
. ..+++++||.+|.|+++|++.+.+.+
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 2 23899999999999999999988754
No 298
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.73 E-value=6.1e-17 Score=155.84 Aligned_cols=203 Identities=15% Similarity=0.146 Sum_probs=129.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-------CCCC-----------eeecccccCCceeEEEEeCCCCccchhh
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPP-------VLPP-----------TRLPEDFYPDRVPITIIDTPSSVEDRGK 79 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~-------~~~~-----------~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 79 (573)
+|+++|++|+|||||+++|+...-.....+ +.+. ......+.++++++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 489999999999999999987432111100 0000 0012334477889999999999999888
Q ss_pred hHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEE
Q 008219 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIE 159 (573)
Q Consensus 80 ~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (573)
...+++.+|++++|+|+++..... ...++..++.. ++|+++|+||+|+... ...+.+..+...++. .++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~--~~~~~~~~~~~--~~P~iivvNK~D~~~a----~~~~~~~~i~~~~~~--~~~~ 150 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ--TRILWRLLRKL--NIPTIIFVNKIDRAGA----DLEKVYQEIKEKLSS--DIVP 150 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH--HHHHHHHHHHc--CCCEEEEEECccccCC----CHHHHHHHHHHHHCC--CeEE
Confidence 889999999999999998865432 23466667665 7999999999998864 245666777777764 2333
Q ss_pred ecCCCCCCchhHHHHHHHHHhCCCCCCcchhhhhchhhHHHHHHHHHHhccCCCC-----CccCchhhhHHhhh------
Q 008219 160 CSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDRD-----GALSDAELNDFQVK------ 228 (573)
Q Consensus 160 ~Sa~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~-----~~l~~~el~~~q~~------ 228 (573)
+.-- ++...+. ...+.....++.+....++..+ +.++.+|+...-++
T Consensus 151 ~~~p---~~~~~~~-------------------~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~ 208 (237)
T cd04168 151 MQKV---GLAPNIC-------------------ETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRK 208 (237)
T ss_pred EECC---cEeeeee-------------------eeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence 2211 0000000 0000012233333333333333 34555555444443
Q ss_pred ----hcCCCCChhHHHHHHHHHhhhccC
Q 008219 229 ----CFNSPLQPSEIVGVKRVVQEKLRE 252 (573)
Q Consensus 229 ----~~~~~l~~~~i~~l~~~i~~~~~~ 252 (573)
+|+.++...+++.|++.+.+.+|+
T Consensus 209 ~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~ 236 (237)
T cd04168 209 VFPVYHGSALKGIGIEELLEGITKLFPT 236 (237)
T ss_pred eEEEEEccccCCcCHHHHHHHHHHhcCC
Confidence 688899999999999999998885
No 299
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.73 E-value=6.9e-17 Score=144.34 Aligned_cols=153 Identities=25% Similarity=0.331 Sum_probs=109.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCCCC-CCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCC
Q 008219 21 VCGEKGTGKSSLIVTAAADTF-PANVPPVL-PPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDR 98 (573)
Q Consensus 21 ivG~~~vGKSSLin~l~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~ 98 (573)
|+|++|+|||||++++.+... .....++. ...............+.+||+||+..+.......++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998776 33333322 2222333444557889999999988877777888999999999999999
Q ss_pred cccHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHHHH
Q 008219 99 PETLDELSTFW-LPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQ 176 (573)
Q Consensus 99 ~~s~~~~~~~~-~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 176 (573)
+.+.......+ .........++|+++|+||+|+.... ...... .......... .+++++|+.++.|+.++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~-~~~~~~-~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER-VVSEEE-LAEQLAKELG-VPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc-chHHHH-HHHHHHhhcC-CcEEEEecCCCCChHHHHHHHh
Confidence 98888877521 22223344689999999999987652 111111 0112222222 3899999999999999999875
No 300
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=8.1e-17 Score=167.77 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeecccccCCceeEEEEeCCCCccchh-------hhHhhhccCC
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG-------KLGEELRRAD 88 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ad 88 (573)
..|+|||.||||||||+|+|++.+.. .++|.+.-.. ....+...+..+.||||||+..... ..-.+++.+|
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P-~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVP-NLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccc-eEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 47999999999999999999986542 3355421111 2233445567899999999753211 1224578899
Q ss_pred EEEEEEeCCCc----ccHHHHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhc
Q 008219 89 AVVLTYACDRP----ETLDELSTFWLPELRRLE------------VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR 152 (573)
Q Consensus 89 ~il~v~D~~~~----~s~~~~~~~~~~~l~~~~------------~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 152 (573)
++|+|+|+++. ..+.++.. |..+|..+. .++|+|+|+||+|+... . ...+.........+
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~-i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da-~--el~e~l~~~l~~~g 314 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDA-LEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA-R--ELAEFVRPELEARG 314 (500)
T ss_pred EEEEEECCcccccccCchhhHHH-HHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh-H--HHHHHHHHHHHHcC
Confidence 99999999863 34444442 444554332 36899999999998754 1 11111121222222
Q ss_pred ccCeEEEecCCCCCCchhHHHHHHHHHh
Q 008219 153 EIETCIECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 153 ~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
.++++|||+++.|++++++++.+.+.
T Consensus 315 --~~Vf~ISA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 315 --WPVFEVSAASREGLRELSFALAELVE 340 (500)
T ss_pred --CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 27999999999999999999988653
No 301
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=4e-17 Score=143.83 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=128.7
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 11 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
....++++|+++|--|+||||++.+|-.++++...|++..... .+..+++++.+||.+|++..+..+..|++..+++
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE---~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVE---TVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCcccccee---EEEEcceEEEEEecCCCcccccchhhhccCCcEE
Confidence 4467889999999999999999999998888777665332222 3345589999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHH-Hhccc-CeEEEecCCCCCC
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ-QFREI-ETCIECSALKQIQ 167 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~Sa~~~~g 167 (573)
|||+|.++++.+....+.+...+.... .+.|+++.+||.|+.+. .+..+....+.. .+..- -.+-.|+|.+|.|
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a---ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA---LSAAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc---CCHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 999999999999999888888886654 58999999999999987 222222111111 11111 1577899999999
Q ss_pred chhHHHHHHHHHh
Q 008219 168 VPEVFYYAQKAVL 180 (573)
Q Consensus 168 i~~l~~~i~~~~~ 180 (573)
+.+.++++...+.
T Consensus 166 L~egl~wl~~~~~ 178 (181)
T KOG0070|consen 166 LYEGLDWLSNNLK 178 (181)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988653
No 302
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=8.5e-17 Score=170.41 Aligned_cols=156 Identities=22% Similarity=0.245 Sum_probs=111.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchh-----------
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRG----------- 78 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~----------- 78 (573)
...++|+|+|++|||||||+|+|++... +...++ +++ ....+...+..+.+|||||+.....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~g---tt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~ 247 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAG---TTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVI 247 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCC---ceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHH
Confidence 3579999999999999999999998653 333444 333 2333445677899999999753221
Q ss_pred hhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc--cCe
Q 008219 79 KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IET 156 (573)
Q Consensus 79 ~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~ 156 (573)
....+++.+|++|+|+|++++.+..+.. +...+... ++|+++|+||+|+.... ...+....+...+.. ..+
T Consensus 248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~~~--~~~~ivv~NK~Dl~~~~---~~~~~~~~~~~~l~~~~~~~ 320 (435)
T PRK00093 248 RTLKAIERADVVLLVIDATEGITEQDLR--IAGLALEA--GRALVIVVNKWDLVDEK---TMEEFKKELRRRLPFLDYAP 320 (435)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCcEEEEEECccCCCHH---HHHHHHHHHHHhcccccCCC
Confidence 1124688999999999999887766654 56666554 78999999999997531 122222333333322 238
Q ss_pred EEEecCCCCCCchhHHHHHHHHH
Q 008219 157 CIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 157 ~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
++++||++|.|++++++.+.+..
T Consensus 321 i~~~SA~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 321 IVFISALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999987754
No 303
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.72 E-value=6.4e-17 Score=158.45 Aligned_cols=225 Identities=16% Similarity=0.100 Sum_probs=138.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-------C---------CCCee--ecccccCCceeEEEEeCCCCccchhh
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPP-------V---------LPPTR--LPEDFYPDRVPITIIDTPSSVEDRGK 79 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~-------~---------~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~ 79 (573)
+|+|+|++|+|||||+++|+...-.....+ + .+.+. ....+.++++++.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 489999999999999999975321111000 0 00111 12334467889999999999888888
Q ss_pred hHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc--cCeE
Q 008219 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETC 157 (573)
Q Consensus 80 ~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (573)
...+++.+|++++|+|+++...-.. ..++..++.. ++|+++++||+|+.+. ..+.....+...++. +...
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~~--~~p~ivviNK~D~~~a----~~~~~~~~l~~~l~~~~~~~~ 152 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADRY--NVPRIAFVNKMDRTGA----DFFRVVEQIREKLGANPVPLQ 152 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCCC----CHHHHHHHHHHHhCCCceEEE
Confidence 8899999999999999877543222 2355666655 7899999999998754 233344555555543 2257
Q ss_pred EEecCCCC-CCchhHHHHHHHHHhCCC--CC------CcchhhhhchhhHHHHHHHHHHhccCCCCCccCch-----hhh
Q 008219 158 IECSALKQ-IQVPEVFYYAQKAVLHPT--GP------LFDQESQALKPRCVRALKRIFILCDHDRDGALSDA-----ELN 223 (573)
Q Consensus 158 ~~~Sa~~~-~gi~~l~~~i~~~~~~~~--~~------~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~-----el~ 223 (573)
+++|+..+ .|+-+++.. ++..++. .. ..........+.....++.+....+...+.|+..+ ++.
T Consensus 153 ~Pisa~~~f~g~vd~~~~--~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~ 230 (270)
T cd01886 153 LPIGEEDDFRGVVDLIEM--KALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIK 230 (270)
T ss_pred eccccCCCceEEEEcccc--EEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHH
Confidence 88999854 455555521 1111111 00 00111111223333444555555555555555444 443
Q ss_pred HHhhh----------hcCCCCChhHHHHHHHHHhhhccC
Q 008219 224 DFQVK----------CFNSPLQPSEIVGVKRVVQEKLRE 252 (573)
Q Consensus 224 ~~q~~----------~~~~~l~~~~i~~l~~~i~~~~~~ 252 (573)
..-.+ +|+.++...+++.+++.+...+|+
T Consensus 231 ~~l~~~~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~ 269 (270)
T cd01886 231 AAIRKGTIANKIVPVLCGSAFKNKGVQPLLDAVVDYLPS 269 (270)
T ss_pred HHHHHHHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCC
Confidence 33332 688889999999999999888874
No 304
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.72 E-value=1.3e-16 Score=148.36 Aligned_cols=117 Identities=21% Similarity=0.250 Sum_probs=93.1
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+++|.+|||||||++++.++.+.. +.++.+. ....+.. +...+.+||++|++.+..+ +..+++++|++
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~~~D~~G~~~~~~~--~~~~~~~ad~i 88 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP--TSEELAI--GNIKFTTFDLGGHQQARRL--WKDYFPEVNGI 88 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc--ceEEEEE--CCEEEEEEECCCCHHHHHH--HHHHhCCCCEE
Confidence 34799999999999999999999987653 3344332 2233333 3467889999999988887 78899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
++|+|++++.++.....++..+....... ++|+++|+||+|+..
T Consensus 89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~--~~piliv~NK~Dl~~ 132 (184)
T smart00178 89 VYLVDAYDKERFAESKRELDALLSDEELA--TVPFLILGNKIDAPY 132 (184)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcChhhc--CCCEEEEEeCccccC
Confidence 99999999999999988888776543222 799999999999864
No 305
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.71 E-value=2.8e-16 Score=173.80 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=112.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhh----------hHhh
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADT-FPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGK----------LGEE 83 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~~~ 83 (573)
+.++|+++|+||||||||+|+|++.. .+.+++++.- ......+...+.++.+|||||+..+... ...+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTv-e~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTV-ERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceE-eeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 46899999999999999999999865 3445655321 1244556677889999999998765421 1123
Q ss_pred --hccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEec
Q 008219 84 --LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (573)
Q Consensus 84 --~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (573)
...+|++++|+|+++.+.. . +|...+.+. ++|+++|+||+|+.+. +.. ....+.+.+.++. +++++|
T Consensus 81 l~~~~aD~vI~VvDat~ler~--l--~l~~ql~e~--giPvIvVlNK~Dl~~~-~~i--~id~~~L~~~LG~--pVvpiS 149 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN--L--YLTLQLLEL--GIPCIVALNMLDIAEK-QNI--RIDIDALSARLGC--PVIPLV 149 (772)
T ss_pred HhccCCCEEEEEecCCcchhh--H--HHHHHHHHc--CCCEEEEEEchhhhhc-cCc--HHHHHHHHHHhCC--CEEEEE
Confidence 3489999999999885432 2 255556555 7999999999998754 222 2334566677763 899999
Q ss_pred CCCCCCchhHHHHHHHHH
Q 008219 162 ALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 162 a~~~~gi~~l~~~i~~~~ 179 (573)
|++|.|++++.+.+....
T Consensus 150 A~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 150 STRGRGIEALKLAIDRHQ 167 (772)
T ss_pred eecCCCHHHHHHHHHHhh
Confidence 999999999999887754
No 306
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=1.2e-16 Score=177.82 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=110.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeecccccCCceeEEEEeCCCCccc----------hhh-hH
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED----------RGK-LG 81 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~-~~ 81 (573)
..+||+++|++|||||||+|+|++... +...+++.... ....+..++..+.+|||||+... ... ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~-~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDP-VDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCc-ceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 458999999999999999999999874 44455533221 22223345567889999996421 111 12
Q ss_pred hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc--cCeEEE
Q 008219 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETCIE 159 (573)
Q Consensus 82 ~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 159 (573)
.+++.+|++++|+|+++..+..... ++..+... ++|+++|+||+|+..... .+.....+...+.. ..++++
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~--i~~~~~~~--~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK--VMSMAVDA--GRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCEEE
Confidence 4578999999999999988887765 55555544 799999999999976411 11111222222221 237799
Q ss_pred ecCCCCCCchhHHHHHHHHHh
Q 008219 160 CSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 160 ~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
+||++|.|++++++.+.+.+.
T Consensus 601 iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988654
No 307
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.71 E-value=1.2e-16 Score=144.78 Aligned_cols=114 Identities=20% Similarity=0.186 Sum_probs=89.5
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 509 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv 509 (573)
||+++|++|||||||+++|..+.+.. +.++.+.+. ..+.. ....+.+|||+|.+.+..+ +..+++.+|++++|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~ii~v 73 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTY--KNLKFQVWDLGGQTSIRPY--WRCYYSNTDAIIYV 73 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEE--CCEEEEEEECCCCHHHHHH--HHHHhcCCCEEEEE
Confidence 68999999999999999998877653 344444333 23332 3468899999999999888 88889999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 510 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 510 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
+|++++.++.....++..+.+..... ++|+++|+||+|+..
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~~ 114 (158)
T cd04151 74 VDSTDRDRLGTAKEELHAMLEEEELK--GAVLLVFANKQDMPG 114 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhc--CCcEEEEEeCCCCCC
Confidence 99999988888777776554432222 799999999999975
No 308
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.71 E-value=2e-16 Score=149.12 Aligned_cols=117 Identities=20% Similarity=0.340 Sum_probs=90.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccC-CEEEEEEe
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRA-DAVVLTYA 95 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a-d~il~v~D 95 (573)
+|+++|++|||||||+++|....+...++++..... ........+..+.+|||||+..+......+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887666554422222 1111113467899999999999888888889998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCC
Q 008219 96 CDRP-ETLDELSTFWLPELRR---LEVKVPVIVVGCKLDLRDE 134 (573)
Q Consensus 96 ~~~~-~s~~~~~~~~~~~l~~---~~~~~piilv~NK~D~~~~ 134 (573)
+++. .++.....+|+..+.. ..+++|+++|+||+|+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9997 6777777655555433 2358999999999998764
No 309
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.71 E-value=2.5e-16 Score=148.34 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=116.4
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchh-----------
Q 008219 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRG----------- 78 (573)
Q Consensus 11 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~----------- 78 (573)
....+.++|+|+|.||||||||.|.+++.+..+....+..++. +...+..+..++.++||||......
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 3346789999999999999999999999887666444332333 5566677788999999999753322
Q ss_pred -hhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc----------ccHHHHHHHH
Q 008219 79 -KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ----------VSLEQVMMPI 147 (573)
Q Consensus 79 -~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~----------~~~~~~~~~~ 147 (573)
....++..||++++|+|+++....-+-. .+..++.+. ++|-++|.||+|.....+. -........+
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 1225688999999999999754433332 566666653 8999999999998764210 0001111222
Q ss_pred HHHhc-------------c--cCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 148 MQQFR-------------E--IETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 148 ~~~~~-------------~--~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
...+. . +..+|.+||++|.||+++-++++..+
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 22221 1 33699999999999999999999864
No 310
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.71 E-value=1.3e-16 Score=144.61 Aligned_cols=116 Identities=26% Similarity=0.280 Sum_probs=93.6
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 509 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv 509 (573)
||+++|.+|||||||++++++.... ...++.+ .....+... ...+.+||++|++.+... +..+++.+|++++|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~--~~~~~~~~~--~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~i~v 73 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIG--FNVETVEYK--NVSFTVWDVGGQDKIRPL--WKHYYENTNGIIFV 73 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcC--cceEEEEEC--CEEEEEEECCCChhhHHH--HHHHhccCCEEEEE
Confidence 6899999999999999999998743 3334443 333344433 467889999999998888 78889999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 510 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 510 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
||++++.+|.....++..+....... +.|+++|+||+|+....
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 74 VDSSDRERIEEAKEELHKLLNEEELK--GVPLLIFANKQDLPGAL 116 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccC--CCcEEEEeeccCCcccc
Confidence 99999999999999988876654333 89999999999997643
No 311
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.71 E-value=1.3e-16 Score=136.29 Aligned_cols=118 Identities=19% Similarity=0.302 Sum_probs=99.4
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
+..++|.|+|..|+||||++++|.+.... ...|+.+ +.++++.++ ...+.+||..|+..++++ |+.|+..+|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~-~i~pt~g--f~Iktl~~~--~~~L~iwDvGGq~~lr~~--W~nYfestdg 86 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTD-TISPTLG--FQIKTLEYK--GYTLNIWDVGGQKTLRSY--WKNYFESTDG 86 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCcc-ccCCccc--eeeEEEEec--ceEEEEEEcCCcchhHHH--HHHhhhccCe
Confidence 34799999999999999999999998843 3335555 667777665 578899999999999999 9999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
+|+|+|.+|+.+|++....+..+....... +.|+++++||.|+..
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~eerla--G~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEERLA--GAPLLVLANKQDLPG 131 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhhhhc--CCceEEEEecCcCcc
Confidence 999999999999999988887766533322 899999999999983
No 312
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.70 E-value=2.2e-16 Score=169.81 Aligned_cols=156 Identities=19% Similarity=0.170 Sum_probs=107.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCeeecccccC-CceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANV-PPVLPPTRLPEDFYP-DRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
..+..+|+++|++|+|||||+++|.+..+.... +++.... -...+.. ++..+.||||||++.|..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~i-g~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHI-GAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecc-eEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 346679999999999999999999988765543 2211111 1111222 223799999999999998888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHH------HHHhcccCeEEEecCCC
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPI------MQQFREIETCIECSALK 164 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~Sa~~ 164 (573)
++|+|+++....+... .+..++.. ++|+++++||+|+.... .+.....+ ...++...+++++||++
T Consensus 163 ILVVda~dgv~~qT~e--~i~~~~~~--~vPiIVviNKiDl~~~~----~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt 234 (587)
T TIGR00487 163 VLVVAADDGVMPQTIE--AISHAKAA--NVPIIVAINKIDKPEAN----PDRVKQELSEYGLVPEDWGGDTIFVPVSALT 234 (587)
T ss_pred EEEEECCCCCCHhHHH--HHHHHHHc--CCCEEEEEECcccccCC----HHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence 9999988753333222 22333333 79999999999986531 11111111 11222223799999999
Q ss_pred CCCchhHHHHHHH
Q 008219 165 QIQVPEVFYYAQK 177 (573)
Q Consensus 165 ~~gi~~l~~~i~~ 177 (573)
|.|++++++.+..
T Consensus 235 GeGI~eLl~~I~~ 247 (587)
T TIGR00487 235 GDGIDELLDMILL 247 (587)
T ss_pred CCChHHHHHhhhh
Confidence 9999999998864
No 313
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.70 E-value=2.7e-16 Score=170.03 Aligned_cols=158 Identities=20% Similarity=0.164 Sum_probs=112.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-------CCCCCCC------CCCee----ecccc---cCCceeEEEEeCCCCccch
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTF-------PANVPPV------LPPTR----LPEDF---YPDRVPITIIDTPSSVEDR 77 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~-------~~~~~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~~~~~ 77 (573)
+|+|+|+.++|||||+++|+...- ...+..+ .+.+. ....+ +...+.++||||||+.++.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 699999999999999999987531 1111110 01111 11222 2345889999999999999
Q ss_pred hhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc-Ce
Q 008219 78 GKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI-ET 156 (573)
Q Consensus 78 ~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~ 156 (573)
.....+++.+|++|+|+|+++..+.+.... |...+. .++|+++|+||+|+.... .++....+...++.. ..
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~~---~~ipiIiViNKiDl~~~~----~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLALE---NDLEIIPVINKIDLPSAD----PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHHH---cCCCEEEEEECcCCCccC----HHHHHHHHHHHhCCCcce
Confidence 889999999999999999999877766553 544443 278999999999986531 222233444444421 25
Q ss_pred EEEecCCCCCCchhHHHHHHHHHhCCC
Q 008219 157 CIECSALKQIQVPEVFYYAQKAVLHPT 183 (573)
Q Consensus 157 ~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 183 (573)
++++||++|.|++++++.+.+.+..|.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 899999999999999999998775553
No 314
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.8e-16 Score=158.76 Aligned_cols=220 Identities=20% Similarity=0.215 Sum_probs=139.3
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccc-hh--------hh
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVED-RG--------KL 80 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~-~~--------~~ 80 (573)
..+..++|+|+|+||||||||+|+|.........| +.++|+ +...+..+++++.+.||+|..+. .+ ..
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSp-v~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSP-VPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCC-CCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHH
Confidence 34567999999999999999999999887544322 334666 66777889999999999998762 22 22
Q ss_pred HhhhccCCEEEEEEeCCC--cccHHHHHHHHHHHHHhc-------CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHH-H
Q 008219 81 GEELRRADAVVLTYACDR--PETLDELSTFWLPELRRL-------EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ-Q 150 (573)
Q Consensus 81 ~~~~~~ad~il~v~D~~~--~~s~~~~~~~~~~~l~~~-------~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~-~ 150 (573)
...++.||++++|+|+.. -++-..+.+ .+...... ..+.|+++|.||+|+....++...... ..... .
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~-~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~-~~~~~~~ 420 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIAR-ILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPV-VYPSAEG 420 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHH-HHHHhccceEEEeccccccceEEEechhhccCccccccCCce-ecccccc
Confidence 366999999999999833 333233222 22222221 125899999999999876322221110 01111 1
Q ss_pred hcccCeEEEecCCCCCCchhHHHHHHHHHhC----CCC--CCcchhhhh-chhhHHH-HHHHHHHhccCCCCCccCchhh
Q 008219 151 FREIETCIECSALKQIQVPEVFYYAQKAVLH----PTG--PLFDQESQA-LKPRCVR-ALKRIFILCDHDRDGALSDAEL 222 (573)
Q Consensus 151 ~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~----~~~--~~~~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~l~~~el 222 (573)
.+......++|+++++|+++|...+.+.+.. +.. +.....+.+ +...+.. .+.+.+...+...|-.+..+++
T Consensus 421 ~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~~~l~~~~~~k~~~~D~~la~~~l 500 (531)
T KOG1191|consen 421 RSVFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHSAPPTLSQKRIKELLRTCAAPELERRFLAKQLKEDIDLAGEPL 500 (531)
T ss_pred CcccceEEEeeechhhhHHHHHHHHHHHHHHhhcCCCCCchhhcchhHHHHHHhhhhhhHHHHHHhhhcccchhhccchH
Confidence 1122256679999999999999998887632 222 222222222 2222332 5667676666666777778888
Q ss_pred hHHhhhhcCCCC
Q 008219 223 NDFQVKCFNSPL 234 (573)
Q Consensus 223 ~~~q~~~~~~~l 234 (573)
+.++........
T Consensus 501 R~a~~~i~r~tg 512 (531)
T KOG1191|consen 501 RLAQRSIARITG 512 (531)
T ss_pred HHHHhhhcccCC
Confidence 777776554433
No 315
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.69 E-value=2.6e-16 Score=171.29 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=111.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCC---CCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCC
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVP-PVL---PPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 88 (573)
..+..+|+|+|++++|||||+++|.+..+..... ++. +.+.........+..+.||||||++.|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3566799999999999999999999877654322 211 112222222235689999999999999988889999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHH------HHHhcccCeEEEecC
Q 008219 89 AVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPI------MQQFREIETCIECSA 162 (573)
Q Consensus 89 ~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~Sa 162 (573)
++|+|+|+++....+... .+..+... ++|+|+|+||+|+.... .+.....+ ...++...+++++||
T Consensus 321 iaILVVDA~dGv~~QT~E--~I~~~k~~--~iPiIVViNKiDl~~~~----~e~v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 321 IAILIIAADDGVKPQTIE--AINYIQAA--NVPIIVAINKIDKANAN----TERIKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred EEEEEEECcCCCChhhHH--HHHHHHhc--CceEEEEEECCCccccC----HHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence 999999998853333222 22333333 79999999999987641 11111111 222333348999999
Q ss_pred CCCCCchhHHHHHHHH
Q 008219 163 LKQIQVPEVFYYAQKA 178 (573)
Q Consensus 163 ~~~~gi~~l~~~i~~~ 178 (573)
++|.|+++|++.+...
T Consensus 393 ktG~GIdeLle~I~~l 408 (742)
T CHL00189 393 SQGTNIDKLLETILLL 408 (742)
T ss_pred CCCCCHHHHHHhhhhh
Confidence 9999999999988764
No 316
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.69 E-value=4.5e-16 Score=146.97 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC---CCC-CCCC-CCCeeeccccc-------------------------------C
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTF---PAN-VPPV-LPPTRLPEDFY-------------------------------P 60 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~---~~~-~~~~-~~~~~~~~~~~-------------------------------~ 60 (573)
++|+++|+.|+|||||+.+|.+... ... ..+. .........+. .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975421 111 0000 00000000000 0
Q ss_pred CceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccH
Q 008219 61 DRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSL 140 (573)
Q Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~ 140 (573)
....+.||||||++.+.......+..+|++++|+|++++........ .+..+.... ..|+++|+||+|+.... ..
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-~l~~~~~~~-~~~iiivvNK~Dl~~~~---~~ 155 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSE-HLAALEIMG-LKHIIIVQNKIDLVKEE---QA 155 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHH-HHHHHHHcC-CCcEEEEEEchhccCHH---HH
Confidence 12679999999998887777788889999999999987421111111 222333331 35799999999997641 11
Q ss_pred HHHHHHHHHHhc----ccCeEEEecCCCCCCchhHHHHHHHHHhC
Q 008219 141 EQVMMPIMQQFR----EIETCIECSALKQIQVPEVFYYAQKAVLH 181 (573)
Q Consensus 141 ~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 181 (573)
......+...+. ...+++++||++|.|++++++.+.+.+..
T Consensus 156 ~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 156 LENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 112222222221 12379999999999999999999886543
No 317
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.69 E-value=1.8e-16 Score=155.18 Aligned_cols=221 Identities=13% Similarity=0.061 Sum_probs=127.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC------CCe----------------eecccccCCceeEEEEeCCCCcc
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVL------PPT----------------RLPEDFYPDRVPITIIDTPSSVE 75 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~------~~~----------------~~~~~~~~~~~~~~i~Dt~G~~~ 75 (573)
+|+|+|++|+|||||+++|+...-.....+.. +.+ .....+.++++++++|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 59999999999999999998643221111110 000 01224557789999999999988
Q ss_pred chhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccC
Q 008219 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIE 155 (573)
Q Consensus 76 ~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (573)
+......+++.+|++++|+|+++..... ...++...... ++|+++++||+|+... ...+.+..+...++...
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~~--~~~i~~~~~~~--~~P~iivvNK~D~~~a----~~~~~~~~l~~~l~~~~ 155 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQ--TRKLFEVCRLR--GIPIITFINKLDREGR----DPLELLDEIEEELGIDC 155 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccHH--HHHHHHHHHhc--CCCEEEEEECCccCCC----CHHHHHHHHHHHHCCCc
Confidence 8877778899999999999998754322 22355555544 7899999999998765 12233455556665421
Q ss_pred eEEEecCCCCCCchhHHHHHHHHHh-CCCC--C--C-----cchhhhhchhhHHHHHHHHHHhccCCCCCccCchhhhHH
Q 008219 156 TCIECSALKQIQVPEVFYYAQKAVL-HPTG--P--L-----FDQESQALKPRCVRALKRIFILCDHDRDGALSDAELNDF 225 (573)
Q Consensus 156 ~~~~~Sa~~~~gi~~l~~~i~~~~~-~~~~--~--~-----~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~ 225 (573)
-.+.+-...+.++..+.+.+..+++ +... . . .....+...+.-..++++.+... ++..+++...
T Consensus 156 ~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~e~~------~~~~~~~~~~ 229 (267)
T cd04169 156 TPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLREEL------ELLEGAGPEF 229 (267)
T ss_pred eeEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHHHhCCC------ccchhhhHHH
Confidence 1222222334444444443333222 1110 0 0 00001111122223333333321 1222222222
Q ss_pred hhh----------hcCCCCChhHHHHHHHHHhhhccC
Q 008219 226 QVK----------CFNSPLQPSEIVGVKRVVQEKLRE 252 (573)
Q Consensus 226 q~~----------~~~~~l~~~~i~~l~~~i~~~~~~ 252 (573)
... +|+.++...++..|++.+.+++|+
T Consensus 230 ~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~ 266 (267)
T cd04169 230 DQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPA 266 (267)
T ss_pred hHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCC
Confidence 111 688899999999999999999885
No 318
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.69 E-value=4.6e-16 Score=145.67 Aligned_cols=129 Identities=23% Similarity=0.269 Sum_probs=99.6
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
+..||+++|++|||||||++++.++.+. .+.++.+.. ...+... ...+.+||++|++.+... +..+++.+|++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~--~~~~~l~D~~G~~~~~~~--~~~~~~~ad~i 90 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIG--NIKFKTFDLGGHEQARRL--WKDYFPEVDGI 90 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEEC--CEEEEEEECCCCHHHHHH--HHHHhccCCEE
Confidence 3479999999999999999999988764 344444432 2334444 367889999999888877 77888999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHH
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT 565 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 565 (573)
++|+|+++..+|.....++..+....... +.|+++|+||+|+.. .+..++.+++++
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~~pvivv~NK~Dl~~-~~~~~~~~~~~~ 146 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELA--NVPFLILGNKIDLPG-AVSEEELRQALG 146 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCcccc--CCCEEEEEeCCCCCC-CcCHHHHHHHhC
Confidence 99999999999998888888877543322 799999999999864 334455555544
No 319
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.69 E-value=1.4e-15 Score=128.20 Aligned_cols=169 Identities=19% Similarity=0.256 Sum_probs=126.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCCeeecccccCC-ceeEEEEeCCCCccc-hhhhHhhhcc
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN---VPPVLPPTRLPEDFYPD-RVPITIIDTPSSVED-RGKLGEELRR 86 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~-~~~~~~~~~~ 86 (573)
..-+..||++||..+||||+++.+|+.+..+.. .|++.+.+...++-+.+ .-.+.|+||.|...+ ..+-..++.-
T Consensus 5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 344678999999999999999999998775544 33333333333333322 345899999998877 3455688999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCC
Q 008219 87 ADAVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (573)
Q Consensus 87 ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (573)
+|++++|||..+++||+.+.. +.++|.+.. ..+||++.+||+|+.+. +++..+- ...+++.-. ...++++|..
T Consensus 85 aDafVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p-~~vd~d~-A~~Wa~rEk--vkl~eVta~d 159 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEP-REVDMDV-AQIWAKREK--VKLWEVTAMD 159 (198)
T ss_pred CceEEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccc-hhcCHHH-HHHHHhhhh--eeEEEEEecc
Confidence 999999999999999999874 666776543 46899999999999865 4444433 244444433 2789999999
Q ss_pred CCCchhHHHHHHHHHhCCCCC
Q 008219 165 QIQVPEVFYYAQKAVLHPTGP 185 (573)
Q Consensus 165 ~~gi~~l~~~i~~~~~~~~~~ 185 (573)
...+-+.|..+...+.+|+..
T Consensus 160 R~sL~epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 160 RPSLYEPFTYLASRLHQPQSK 180 (198)
T ss_pred chhhhhHHHHHHHhccCCccc
Confidence 999999999999988777643
No 320
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.69 E-value=3.6e-16 Score=149.93 Aligned_cols=122 Identities=27% Similarity=0.340 Sum_probs=106.0
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.+||+|+|++|||||||+++|.++.+...+.++.+..+........+...++.+|||+|++.+..+ +..++.++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~--~~~y~~~~~~~l 82 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSL--RPEYYRGANGIL 82 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHH--HHHHhcCCCEEE
Confidence 389999999999999999999999999999888887777776666645778999999999999999 889999999999
Q ss_pred EEEeCCC-hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 508 FVHDSSD-ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 508 lv~D~~~-~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
+|||.++ ..+++....|+..+....+. +.|+++|+||+|+....
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~---~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAPD---DVPILLVGNKIDLFDEQ 127 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCCC---CceEEEEecccccccch
Confidence 9999999 45566667888888877642 69999999999998754
No 321
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.69 E-value=3.7e-16 Score=171.75 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=109.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
..+...|+|+|+.++|||||+++|.+..+.....+..........+.+.+..+.||||||++.|..++...+..+|++|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 45678899999999999999999988776543222110111112233446789999999999999988889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHH---HHHHHHhcccCeEEEecCCCCCCch
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVM---MPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
|||+++...-+... .+..++.. ++|+|+|+||+|+..... ......+ ..+...++...+++++||++|.|++
T Consensus 367 VVdAddGv~~qT~e--~i~~a~~~--~vPiIVviNKiDl~~a~~-e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~ 441 (787)
T PRK05306 367 VVAADDGVMPQTIE--AINHAKAA--GVPIIVAINKIDKPGANP-DRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID 441 (787)
T ss_pred EEECCCCCCHhHHH--HHHHHHhc--CCcEEEEEECccccccCH-HHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence 99998853222222 22233333 799999999999965310 0011111 1112233333489999999999999
Q ss_pred hHHHHHHH
Q 008219 170 EVFYYAQK 177 (573)
Q Consensus 170 ~l~~~i~~ 177 (573)
++++.+..
T Consensus 442 eLle~I~~ 449 (787)
T PRK05306 442 ELLEAILL 449 (787)
T ss_pred HHHHhhhh
Confidence 99998864
No 322
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.69 E-value=3.2e-16 Score=143.37 Aligned_cols=115 Identities=23% Similarity=0.313 Sum_probs=89.4
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCC------CCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccc
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFS------DNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 503 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~ 503 (573)
+|+++|++|||||||+++|.+.... ..+.++.+... ..+.++ ...+.+|||+|++.+..+ +..+++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~--~~~~~~~~ 74 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSL--WDKYYAEC 74 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHH--HHHHhCCC
Confidence 5899999999999999999864321 12233333333 234433 468899999999998887 77889999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 504 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 504 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
|++++|+|++++.++.....++..+....... ++|+++|+||+|+..
T Consensus 75 ~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~D~~~ 121 (167)
T cd04160 75 HAIIYVIDSTDRERFEESKSALEKVLRNEALE--GVPLLILANKQDLPD 121 (167)
T ss_pred CEEEEEEECchHHHHHHHHHHHHHHHhChhhc--CCCEEEEEEcccccc
Confidence 99999999999999999988888876643222 799999999999865
No 323
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.68 E-value=6.6e-16 Score=139.55 Aligned_cols=115 Identities=20% Similarity=0.260 Sum_probs=95.0
Q ss_pred EEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEEE
Q 008219 431 CFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVH 510 (573)
Q Consensus 431 i~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~ 510 (573)
|+++|++|||||||+++|.+.++...+.++.+.... .+... ...+.+||++|.+.+..+ +..+++.+|++++|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~--~~~~~~~~d~ii~v~ 75 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG--NVTLKVWDLGGQPRFRSM--WERYCRGVNAIVYVV 75 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHH--HHHHHhcCCEEEEEE
Confidence 899999999999999999999988777776665443 23333 378899999999998887 788899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 511 DSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 511 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
|+++..++.....++..+....... ++|+++|+||+|+...
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 76 DAADRTALEAAKNELHDLLEKPSLE--GIPLLVLGNKNDLPGA 116 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhc--CCCEEEEEeCccccCC
Confidence 9999999998888887776543222 7999999999998753
No 324
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=8.4e-17 Score=140.91 Aligned_cols=161 Identities=17% Similarity=0.310 Sum_probs=131.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeccccc--CCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY--PDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
...+|++++|+.|.|||+++++.+.+.|...++.+.+....+..+. .+.+++..|||.|++.+......++-.+.+.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 4589999999999999999999999999998887776655443333 33589999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
++||++.+.++.++.. |...+.+.+.++||+++|||.|..... +... .+. -..+....++++||+++.|.+..
T Consensus 88 imFdVtsr~t~~n~~r-whrd~~rv~~NiPiv~cGNKvDi~~r~--~k~k-~v~---~~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPR-WHRDLVRVRENIPIVLCGNKVDIKARK--VKAK-PVS---FHRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred EEeeeeehhhhhcchH-HHHHHHHHhcCCCeeeeccceeccccc--cccc-cce---eeecccceeEEeecccccccccc
Confidence 9999999999999996 999998888899999999999987651 1111 100 00111137999999999999999
Q ss_pred HHHHHHHHhC
Q 008219 172 FYYAQKAVLH 181 (573)
Q Consensus 172 ~~~i~~~~~~ 181 (573)
|-++.+++..
T Consensus 161 Fl~LarKl~G 170 (216)
T KOG0096|consen 161 FLWLARKLTG 170 (216)
T ss_pred hHHHhhhhcC
Confidence 9999998743
No 325
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.68 E-value=9.4e-16 Score=147.47 Aligned_cols=150 Identities=20% Similarity=0.203 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeecccccCCceeEEEEeCCCCccch-------hhhHhhhccCCE
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDR-------GKLGEELRRADA 89 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ad~ 89 (573)
+|+++|++|||||||+|+|++... ..+++.+.- ......+..++..+++|||||+.... .....+++.+|+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~-~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~ 80 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTL-TCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL 80 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccc-cceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence 799999999999999999998752 333443211 11234444567899999999975432 123467899999
Q ss_pred EEEEEeCCCccc-HHHHHHHH----------------------------------------HHHH---------------
Q 008219 90 VVLTYACDRPET-LDELSTFW----------------------------------------LPEL--------------- 113 (573)
Q Consensus 90 il~v~D~~~~~s-~~~~~~~~----------------------------------------~~~l--------------- 113 (573)
+++|+|++++.. ...+.+.+ ...+
T Consensus 81 il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~ 160 (233)
T cd01896 81 ILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRED 160 (233)
T ss_pred EEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccC
Confidence 999999987642 22221111 0111
Q ss_pred ----------HhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 114 ----------RRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 114 ----------~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
......+|+++|+||+|+... +....+.. ..+++++||++|.|++++++.+.+.+
T Consensus 161 ~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-------~~~~~~~~----~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 161 ITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-------EELDLLAR----QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCHHHHHHHHhCCceEeeEEEEEECccCCCH-------HHHHHHhc----CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 111124799999999998754 11122222 12689999999999999999988753
No 326
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.68 E-value=3.1e-16 Score=143.86 Aligned_cols=140 Identities=19% Similarity=0.078 Sum_probs=92.1
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhH----HHhhhc-ccccccccc
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----VAKLLS-NKDSLAACD 504 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~----~~~~~~-~~~~~~~~d 504 (573)
+|+++|++|||||||+|+|.+........+..+....+..+... +...+.+|||+|... ...+.. ....++.+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 58999999999999999999866422222222333333334444 334788999999631 111100 112345699
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHc-CCcc
Q 008219 505 IAVFVHDSSDE-SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFL-VMVL 571 (573)
Q Consensus 505 ~vilv~D~~~~-~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~ 571 (573)
++++|+|++++ .+++.+..|+..+....... .++|+++|+||+|+.......+....+.++. +.++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 148 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPEL-LEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPV 148 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccc-cccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCE
Confidence 99999999999 79999999988887654221 1789999999999976544344445555542 4443
No 327
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.67 E-value=5.7e-16 Score=167.50 Aligned_cols=155 Identities=20% Similarity=0.149 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCCC-CCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADT---FPANV-PPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
+.|+++|++++|||||+++|++.. +.... +++.-. .....+...+..+.+|||||++.+.......+..+|++++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid-~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL 79 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTID-LGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALL 79 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEE-eEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence 469999999999999999999643 22221 221000 0111233445889999999999888877888999999999
Q ss_pred EEeCCCc---ccHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccccHHHHHHHHHHHhcc--cCeEEEecCCCCC
Q 008219 93 TYACDRP---ETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETCIECSALKQI 166 (573)
Q Consensus 93 v~D~~~~---~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~ 166 (573)
|+|+++. ++.+.+ ..++.. ++| +++|+||+|+.+........+....+...++. ..+++++||++|.
T Consensus 80 VVDa~~G~~~qT~ehl-----~il~~l--gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~ 152 (581)
T TIGR00475 80 VVDADEGVMTQTGEHL-----AVLDLL--GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ 152 (581)
T ss_pred EEECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence 9999884 343333 334443 677 99999999998652111122333444444431 2489999999999
Q ss_pred CchhHHHHHHHHH
Q 008219 167 QVPEVFYYAQKAV 179 (573)
Q Consensus 167 gi~~l~~~i~~~~ 179 (573)
|+++++..+...+
T Consensus 153 GI~eL~~~L~~l~ 165 (581)
T TIGR00475 153 GIGELKKELKNLL 165 (581)
T ss_pred CchhHHHHHHHHH
Confidence 9999999887654
No 328
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.67 E-value=1.7e-16 Score=133.87 Aligned_cols=164 Identities=18% Similarity=0.268 Sum_probs=127.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP--TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
-.+||.++|++.+|||||+-.++++.+...+..+.+. ..+.+.+.+..+.+.|||.+|++++..+++.+.+++-+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 4789999999999999999999998886554443333 22455566778899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc---ccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN---QQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
+||++.+.++..+.+ |++..+..+...--|+||+|.|..-.- -+..+.......++-... +.+.||+.++.|+.
T Consensus 99 mFDLt~r~TLnSi~~-WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA--sL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKE-WYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNA--SLFFCSTSHSINVQ 175 (205)
T ss_pred EEecCchHHHHHHHH-HHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC--cEEEeeccccccHH
Confidence 999999999999996 999999876554457899999964321 111122222333333332 79999999999999
Q ss_pred hHHHHHHHHHhC
Q 008219 170 EVFYYAQKAVLH 181 (573)
Q Consensus 170 ~l~~~i~~~~~~ 181 (573)
.+|..+..+++.
T Consensus 176 KIFK~vlAklFn 187 (205)
T KOG1673|consen 176 KIFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHHhC
Confidence 999988877653
No 329
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.66 E-value=7.2e-16 Score=152.20 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=93.9
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhH----H-Hhhhc-cccccccc
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----V-AKLLS-NKDSLAAC 503 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~----~-~~~~~-~~~~~~~~ 503 (573)
+|+++|+||||||||+|+|++.+...++..+.+|+..+..+... +...+.+|||+|... + ..+.+ ...+++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999999888887778888777766665 345688999999532 1 11100 34567899
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcC
Q 008219 504 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 568 (573)
Q Consensus 504 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 568 (573)
|++++|+|+++..++. ..++..+... +.|+++|+||+|+............++...+
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~~------~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~ 137 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQNL------KRPVVLTRNKLDNKFKDKLLPLIDKYAILED 137 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHhc------CCCEEEEEECeeCCCHHHHHHHHHHHHhhcC
Confidence 9999999999876664 3333444332 7999999999999754333444555555444
No 330
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.66 E-value=2.2e-16 Score=140.34 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=82.4
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCCh-----hHHHhhhcccccccccc
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE-----EAVAKLLSNKDSLAACD 504 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~-----~~~~~~~~~~~~~~~~d 504 (573)
||+++|++|||||||+|+|.+..+. +.++.+ +.+. . .+|||+|. +.+..+ . ..++++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~-~----~~iDt~G~~~~~~~~~~~~--~-~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYN-D----GAIDTPGEYVENRRLYSAL--I-VTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEc-C----eeecCchhhhhhHHHHHHH--H-HHhhcCC
Confidence 7999999999999999999988752 222222 2222 1 57999997 234444 2 2479999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCC-ccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM-VLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~ 572 (573)
++++|||++++.++.. ..|... . ..|+++|+||+|+.+.....+++++++++.+. ++|
T Consensus 65 ~vilv~d~~~~~s~~~-~~~~~~----~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 123 (142)
T TIGR02528 65 VIALVQSATDPESRFP-PGFASI----F-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIF 123 (142)
T ss_pred EEEEEecCCCCCcCCC-hhHHHh----c-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEE
Confidence 9999999999988754 233321 1 35999999999997544455667788887775 443
No 331
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.66 E-value=1e-15 Score=145.08 Aligned_cols=151 Identities=21% Similarity=0.127 Sum_probs=96.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--C----------------C------CC-----CCCee--ecccccCCceeEE
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPAN--V----------------P------PV-----LPPTR--LPEDFYPDRVPIT 66 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~--~----------------~------~~-----~~~~~--~~~~~~~~~~~~~ 66 (573)
+|+|+|++|+|||||+++|+...-... . . .. .+.|. ....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999986442211 0 0 00 01111 2233446678899
Q ss_pred EEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--ccHHHHH
Q 008219 67 IIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ--VSLEQVM 144 (573)
Q Consensus 67 i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~--~~~~~~~ 144 (573)
||||||+.++.......++.+|++++|+|++++..-... .....++... ..++|+|+||+|+...... .......
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~~-~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLLG-IRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHcC-CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 999999988776667788999999999998875322221 1333333331 2468889999998753111 0112223
Q ss_pred HHHHHHhcc-cCeEEEecCCCCCCchhH
Q 008219 145 MPIMQQFRE-IETCIECSALKQIQVPEV 171 (573)
Q Consensus 145 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 171 (573)
..+...++. ..++++|||++|.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 333444442 126899999999999854
No 332
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.66 E-value=1.2e-15 Score=163.79 Aligned_cols=157 Identities=19% Similarity=0.191 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC----CCCeeeccccc--------------CCceeEEEEeCCCCccchh
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPV----LPPTRLPEDFY--------------PDRVPITIIDTPSSVEDRG 78 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~----~~~~~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~ 78 (573)
--|+|+|++|+|||||+|+|.+..+....++. .+.+....... .....+.||||||++.+..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 35999999999999999999988776554431 11111111110 1112488999999999998
Q ss_pred hhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc---cc---------------H
Q 008219 79 KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ---VS---------------L 140 (573)
Q Consensus 79 ~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~---~~---------------~ 140 (573)
+...+++.+|++++|+|+++....+... .+..++.. ++|+++|+||+|+...... .. .
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e--~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~ 160 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQE--ALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNL 160 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHH--HHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHH
Confidence 8888999999999999998743322222 23334443 7899999999998642100 00 0
Q ss_pred HHH----HHHHHH------------HhcccCeEEEecCCCCCCchhHHHHHHH
Q 008219 141 EQV----MMPIMQ------------QFREIETCIECSALKQIQVPEVFYYAQK 177 (573)
Q Consensus 141 ~~~----~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 177 (573)
++. ...+.+ .++...+++++||++|.|+++|+..+..
T Consensus 161 ~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 161 DTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 000 001110 1233348999999999999999998754
No 333
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.66 E-value=1.7e-15 Score=136.78 Aligned_cols=150 Identities=25% Similarity=0.250 Sum_probs=101.1
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeecccccC-CceeEEEEeCCCCccchh-------hhHhhhccCCEE
Q 008219 21 VCGEKGTGKSSLIVTAAADTFPAN--VPPVLPPTRLPEDFYP-DRVPITIIDTPSSVEDRG-------KLGEELRRADAV 90 (573)
Q Consensus 21 ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ad~i 90 (573)
|+|++|+|||||++++++...... .+++.... ....... ....+.+|||||+..... ....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDP-VEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECC-eEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 589999999999999998654422 22211111 1111222 267899999999876543 334578999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHH--HHHHHHhcccCeEEEecCCCCCCc
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVM--MPIMQQFREIETCIECSALKQIQV 168 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi 168 (573)
++|+|+++..+..... +....... +.|+++|+||+|+.... ...... ...........+++++||+++.|+
T Consensus 80 l~v~~~~~~~~~~~~~--~~~~~~~~--~~~~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 152 (163)
T cd00880 80 LFVVDADLRADEEEEK--LLELLRER--GKPVLLVLNKIDLLPEE---EEEELLELRLLILLLLLGLPVIAVSALTGEGI 152 (163)
T ss_pred EEEEeCCCCCCHHHHH--HHHHHHhc--CCeEEEEEEccccCChh---hHHHHHHHHHhhcccccCCceEEEeeeccCCH
Confidence 9999999987766654 34444333 89999999999988752 111111 111122222348999999999999
Q ss_pred hhHHHHHHHH
Q 008219 169 PEVFYYAQKA 178 (573)
Q Consensus 169 ~~l~~~i~~~ 178 (573)
.++++.+.+.
T Consensus 153 ~~l~~~l~~~ 162 (163)
T cd00880 153 DELREALIEA 162 (163)
T ss_pred HHHHHHHHhh
Confidence 9999988763
No 334
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.65 E-value=1.9e-15 Score=138.11 Aligned_cols=156 Identities=23% Similarity=0.171 Sum_probs=98.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccc----------hhhhHhhhc--
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED----------RGKLGEELR-- 85 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~-- 85 (573)
.|+++|++|||||||+|++++..+.....++.+.+.....+... ..+.+|||||.... ......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 48999999999999999999766555544444343322222222 28999999996432 222233333
Q ss_pred -cCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCC
Q 008219 86 -RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (573)
Q Consensus 86 -~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (573)
..+++++++|.+...+.... .....+... +.|+++|+||+|+........................+++++||++
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~ 155 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLK 155 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCC
Confidence 45789999998766433322 244455544 6899999999998654111111111122222112223789999999
Q ss_pred CCCchhHHHHHHHH
Q 008219 165 QIQVPEVFYYAQKA 178 (573)
Q Consensus 165 ~~gi~~l~~~i~~~ 178 (573)
+.|+.++++.+.+.
T Consensus 156 ~~~~~~l~~~l~~~ 169 (170)
T cd01876 156 GQGIDELRALIEKW 169 (170)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988763
No 335
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.65 E-value=1.6e-15 Score=139.71 Aligned_cols=118 Identities=26% Similarity=0.352 Sum_probs=98.6
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
++.+||+++|.+|+|||||++++..+.... ..||.+ +.+..+... +..+.+||.+|+..++.+ ++.++.++|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~--~~~~~~~d~gG~~~~~~~--w~~y~~~~~~ 84 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYK--GYSLTIWDLGGQESFRPL--WKSYFQNADG 84 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEET--TEEEEEEEESSSGGGGGG--GGGGHTTESE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeC--cEEEEEEecccccccccc--ceeeccccce
Confidence 567899999999999999999999876443 334444 455556664 467899999999999988 9999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
+|+|+|+++.+.+.+....+..+....... ++|++|++||+|+..
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~--~~piLIl~NK~D~~~ 129 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELK--DIPILILANKQDLPD 129 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGT--TSEEEEEEESTTSTT
T ss_pred eEEEEecccceeecccccchhhhcchhhcc--cceEEEEeccccccC
Confidence 999999999999999999998887754333 899999999999875
No 336
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.65 E-value=3.9e-16 Score=138.12 Aligned_cols=131 Identities=17% Similarity=0.178 Sum_probs=90.1
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhH------HHhhhcccccc--
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA------VAKLLSNKDSL-- 500 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~------~~~~~~~~~~~-- 500 (573)
++|+++|.||||||||+|+|.|.+......|..|.+.....+.+. ...+.++|++|.-. ...+ +..++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~--~~~~~lvDlPG~ysl~~~s~ee~v--~~~~l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLG--DQQVELVDLPGIYSLSSKSEEERV--ARDYLLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEET--TEEEEEEE----SSSSSSSHHHHH--HHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEec--CceEEEEECCCcccCCCCCcHHHH--HHHHHhh
Confidence 589999999999999999999988554444555555554555554 37888999999311 1222 23333
Q ss_pred ccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 501 AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 501 ~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
...|+++.|+|+++.+ .-.....++.+. ++|+++|.||+|+..++....+...+++.+|+|.+
T Consensus 77 ~~~D~ii~VvDa~~l~---r~l~l~~ql~e~------g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi 139 (156)
T PF02421_consen 77 EKPDLIIVVVDATNLE---RNLYLTLQLLEL------GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVI 139 (156)
T ss_dssp TSSSEEEEEEEGGGHH---HHHHHHHHHHHT------TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EE
T ss_pred cCCCEEEEECCCCCHH---HHHHHHHHHHHc------CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEE
Confidence 6899999999998753 333344555544 89999999999998766555678889999998864
No 337
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=5.7e-15 Score=133.18 Aligned_cols=166 Identities=21% Similarity=0.193 Sum_probs=110.3
Q ss_pred ccCCCCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccc---------
Q 008219 6 AANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED--------- 76 (573)
Q Consensus 6 ~~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------- 76 (573)
+.....+.....-|+++|++|||||||+|+|++..-....+.+.+.|+..-.+...+ .+.++|.||....
T Consensus 14 ~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-~~~lVDlPGYGyAkv~k~~~e~ 92 (200)
T COG0218 14 PDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-ELRLVDLPGYGYAKVPKEVKEK 92 (200)
T ss_pred CCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-cEEEEeCCCcccccCCHHHHHH
Confidence 334455566777899999999999999999999763223333344666433343333 2899999996421
Q ss_pred -hhhhHhhhcc---CCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhc
Q 008219 77 -RGKLGEELRR---ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR 152 (573)
Q Consensus 77 -~~~~~~~~~~---ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 152 (573)
...+..|++. -.++++++|+..+ ....+...++.+... ++|+++|+||+|..... .....+..+++.+.
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~~--~i~~~vv~tK~DKi~~~---~~~k~l~~v~~~l~ 165 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLEL--GIPVIVVLTKADKLKKS---ERNKQLNKVAEELK 165 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHHc--CCCeEEEEEccccCChh---HHHHHHHHHHHHhc
Confidence 1223345443 5678888996655 444444588888877 89999999999988751 12222233443332
Q ss_pred ccC----eEEEecCCCCCCchhHHHHHHHHH
Q 008219 153 EIE----TCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 153 ~~~----~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
... .++..|+.++.|++++...|...+
T Consensus 166 ~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 166 KPPPDDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred CCCCccceEEEEecccccCHHHHHHHHHHHh
Confidence 211 278899999999999998887654
No 338
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.65 E-value=3.4e-15 Score=139.30 Aligned_cols=150 Identities=16% Similarity=0.167 Sum_probs=98.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC--------CC---CCCC---CCCCee--ecccccCCceeEEEEeCCCCccchhh
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTF--------PA---NVPP---VLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGK 79 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~--------~~---~~~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~ 79 (573)
.++|+++|..++|||||+++|+.... .. +... ..+.+. ....+..++..+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 57999999999999999999986410 00 0000 011111 22334466788999999999888777
Q ss_pred hHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCccc-ccHHHHHHHHHHHhcc---c
Q 008219 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDENQQ-VSLEQVMMPIMQQFRE---I 154 (573)
Q Consensus 80 ~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~D~~~~~~~-~~~~~~~~~~~~~~~~---~ 154 (573)
....+..+|++++|+|++.... ......+..+... ++| +|+|+||+|+...... ....+.+......++. .
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~--~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM--PQTREHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc--HHHHHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 7888999999999999876533 2222355556555 666 7899999998643111 1122233334444432 1
Q ss_pred CeEEEecCCCCCCch
Q 008219 155 ETCIECSALKQIQVP 169 (573)
Q Consensus 155 ~~~~~~Sa~~~~gi~ 169 (573)
.+++++||++|.|+.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 379999999999864
No 339
>COG1159 Era GTPase [General function prediction only]
Probab=99.65 E-value=8e-16 Score=146.37 Aligned_cols=119 Identities=18% Similarity=0.275 Sum_probs=95.3
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhH----H-Hhhhc-ccccccc
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----V-AKLLS-NKDSLAA 502 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~----~-~~~~~-~~~~~~~ 502 (573)
--|++||+||||||||+|+++|.+.+++++.+.|||..+..+... +...++++||+|-.. + ..+.+ ....+..
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~d 85 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSALKD 85 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhcc
Confidence 469999999999999999999999999999999999999998888 577888999999321 1 11111 4567899
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc
Q 008219 503 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM 555 (573)
Q Consensus 503 ~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 555 (573)
+|++++|+|+++. +..-+.++.+..... +.|++++.||+|......
T Consensus 86 vDlilfvvd~~~~--~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 86 VDLILFVVDADEG--WGPGDEFILEQLKKT-----KTPVILVVNKIDKVKPKT 131 (298)
T ss_pred CcEEEEEEecccc--CCccHHHHHHHHhhc-----CCCeEEEEEccccCCcHH
Confidence 9999999999986 555666654444332 689999999999887543
No 340
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.4e-15 Score=159.64 Aligned_cols=156 Identities=14% Similarity=0.140 Sum_probs=116.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchh------hhHhh-h-c
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADT-FPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG------KLGEE-L-R 85 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~-~-~ 85 (573)
+..+|+++|+||||||||+|+|++.+ .+.++||+. .-++.+.+...+..+.++|.||...... ....+ + .
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvT-VEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVT-VEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCee-EEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 45679999999999999999999966 788999842 2236677777788899999999765432 22233 3 4
Q ss_pred cCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCC
Q 008219 86 RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (573)
Q Consensus 86 ~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (573)
.+|+++.|+|+++.+.--. +.-++.+. ++|++++.|++|..+. +.+..+ .+.+.+.+|- |++++||++|
T Consensus 81 ~~D~ivnVvDAtnLeRnLy----ltlQLlE~--g~p~ilaLNm~D~A~~-~Gi~ID--~~~L~~~LGv--PVv~tvA~~g 149 (653)
T COG0370 81 KPDLIVNVVDATNLERNLY----LTLQLLEL--GIPMILALNMIDEAKK-RGIRID--IEKLSKLLGV--PVVPTVAKRG 149 (653)
T ss_pred CCCEEEEEcccchHHHHHH----HHHHHHHc--CCCeEEEeccHhhHHh-cCCccc--HHHHHHHhCC--CEEEEEeecC
Confidence 5799999999888653221 22233333 8999999999998876 333333 3567777774 9999999999
Q ss_pred CCchhHHHHHHHHHhCC
Q 008219 166 IQVPEVFYYAQKAVLHP 182 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~~~ 182 (573)
.|++++...+.+.....
T Consensus 150 ~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 150 EGLEELKRAIIELAESK 166 (653)
T ss_pred CCHHHHHHHHHHhcccc
Confidence 99999999998865443
No 341
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.64 E-value=1.1e-15 Score=165.56 Aligned_cols=145 Identities=18% Similarity=0.152 Sum_probs=102.1
Q ss_pred cCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhh------hHhhh--ccCCEEEEE
Q 008219 23 GEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGK------LGEEL--RRADAVVLT 93 (573)
Q Consensus 23 G~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~--~~ad~il~v 93 (573)
|+||||||||+|+|++... +.+++++.... ....+..++..+.+|||||+..+... ...++ ..+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~-~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEK-KEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEE-EEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 8999999999999998774 44455532111 22334455678999999998876543 22332 479999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 94 YACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
+|+++.+.. . ++...+.+. ++|+++|+||+|+.+. +... ...+.+.+.++ .+++++||++|.|++++++
T Consensus 80 vDat~ler~---l-~l~~ql~~~--~~PiIIVlNK~Dl~~~-~~i~--~d~~~L~~~lg--~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 80 VDASNLERN---L-YLTLQLLEL--GIPMILALNLVDEAEK-KGIR--IDEEKLEERLG--VPVVPTSATEGRGIERLKD 148 (591)
T ss_pred ecCCcchhh---H-HHHHHHHhc--CCCEEEEEehhHHHHh-CCCh--hhHHHHHHHcC--CCEEEEECCCCCCHHHHHH
Confidence 998874321 1 244444443 7999999999998654 2222 23455666666 3899999999999999999
Q ss_pred HHHHHH
Q 008219 174 YAQKAV 179 (573)
Q Consensus 174 ~i~~~~ 179 (573)
.+.+..
T Consensus 149 ~i~~~~ 154 (591)
T TIGR00437 149 AIRKAI 154 (591)
T ss_pred HHHHHh
Confidence 998764
No 342
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.64 E-value=1.1e-15 Score=159.82 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=94.0
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEE-EEEEcCCCeEEEEEEecCChhHHHhhh------ccccc
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAV-NVVDQPGGTKKTVVLREIPEEAVAKLL------SNKDS 499 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~dt~G~~~~~~~~------~~~~~ 499 (573)
..+||+++|++|||||||+|+|++..+..+...+++++... ..+.++ +..+.+|||+|.+.+.... +...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~--g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN--GILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC--CEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 44799999999999999999999987665555556655543 344444 3567899999975432210 13457
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 500 LAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 500 ~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
++.+|++++|||++++.+++.. |+..+... ++|+++|+||+|+... +..++++.++++++
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~~------~~piIlV~NK~Dl~~~-----~~~~~~~~~~~~~~ 339 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNKS------KKPFILVLNKIDLKIN-----SLEFFVSSKVLNSS 339 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhhC------CCCEEEEEECccCCCc-----chhhhhhhcCCceE
Confidence 8999999999999998887765 66655432 7899999999999653 23445666665543
No 343
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.64 E-value=2.3e-15 Score=139.37 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=90.8
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCC-------CCCCCCC------CcccEEEEEE--Ec---CCCeEEEEEEecCChhHHH
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPF-------SDNYTPT------TDERYAVNVV--DQ---PGGTKKTVVLREIPEEAVA 491 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~-------~~~~~~~------~~~~~~~~~~--~~---~~~~~~~~i~dt~G~~~~~ 491 (573)
+|+++|.+|||||||+++|++... ...+.++ .+.......+ .+ ++....+.+|||+|++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 699999999999999999987431 1111111 1222222222 22 4456678899999999988
Q ss_pred hhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCc
Q 008219 492 KLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMV 570 (573)
Q Consensus 492 ~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 570 (573)
.. ...+++.+|++++|||++++.+++....|.... .. ++|+++|+||+|+...+ .....+++++.++++
T Consensus 82 ~~--~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~~------~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~ 150 (179)
T cd01890 82 YE--VSRSLAACEGALLLVDATQGVEAQTLANFYLAL-EN------NLEIIPVINKIDLPSAD-PERVKQQIEDVLGLD 150 (179)
T ss_pred HH--HHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-Hc------CCCEEEEEECCCCCcCC-HHHHHHHHHHHhCCC
Confidence 87 778899999999999999987776666554322 21 78999999999986532 223345667776664
No 344
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=99.64 E-value=2.7e-16 Score=119.56 Aligned_cols=70 Identities=53% Similarity=0.971 Sum_probs=67.2
Q ss_pred CCCCCCCCccccccCCCcccHHHHHhhchhhhccCHHHHHHHHHHhcCCC-----CcccceEEeccccchhhhcc
Q 008219 354 PWDEAPYKDAAEKTALGGLSLDGFLSEWALMTLLDPARSVENLIYIGYPG-----DPSSAIRVTRKRRIDRKKQQ 423 (573)
Q Consensus 354 p~~~~~~~~~~~~~~~~~i~l~~~~~~w~~~~~~~~~~~~~~l~y~g~~~-----~~~~a~~~~~~~~~~~~~~~ 423 (573)
||...+++.+.++|++|+||++||||+|++++++||+.++++|+|+||++ ++.+|+.++++|+.++++++
T Consensus 1 PW~~~~~~~~~~~n~~G~iTl~gfLa~W~l~T~ld~~~tle~L~YLGy~~~~~~~~~~~Ai~VTr~R~~d~~k~~ 75 (76)
T PF08355_consen 1 PWIEPDFPDSVVTNEKGWITLQGFLAQWSLTTLLDPKRTLEYLAYLGYPGLSEQDSQTSAITVTRPRRLDRKKGQ 75 (76)
T ss_pred CCCCCCCcceeEEcCCCcCcHHHHHHHHHHHHHhCHHHHHHHHhhcCCCCccCCCCchhheEEcCchhhhhhccC
Confidence 89999999999999999999999999999999999999999999999999 89999999999999988764
No 345
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.63 E-value=2.4e-15 Score=158.34 Aligned_cols=159 Identities=20% Similarity=0.140 Sum_probs=103.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------------C-----------------CCCCee--ecccccCC
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVP------------P-----------------VLPPTR--LPEDFYPD 61 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~------------~-----------------~~~~~~--~~~~~~~~ 61 (573)
.++.++|+++|++++|||||+++|+...-..... + ..+.|. ....+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 4578999999999999999999998543211100 0 011222 22344567
Q ss_pred ceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--cc
Q 008219 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ--VS 139 (573)
Q Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~--~~ 139 (573)
++.+.+|||||++++.......+..+|++++|+|+++..++......++..+.... ..|+++|+||+|+...... ..
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHHHHH
Confidence 88999999999988876666668899999999999873233222222333444432 2469999999999753110 11
Q ss_pred HHHHHHHHHHHhcc---cCeEEEecCCCCCCchhHH
Q 008219 140 LEQVMMPIMQQFRE---IETCIECSALKQIQVPEVF 172 (573)
Q Consensus 140 ~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~ 172 (573)
..+.+..+...++. ..++++|||++|.|++++.
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 12223333344432 1379999999999999754
No 346
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.63 E-value=5.8e-15 Score=135.93 Aligned_cols=117 Identities=25% Similarity=0.316 Sum_probs=92.3
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..++|+++|++|||||||++++.+..+.. ..++.+. ....+... ...+.+||++|...+... +..+++.+|++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~--~~~~i~~~--~~~~~~~D~~G~~~~~~~--~~~~~~~~~~i 85 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGF--NIKTVQSD--GFKLNVWDIGGQRAIRPY--WRNYFENTDCL 85 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCc--ceEEEEEC--CEEEEEEECCCCHHHHHH--HHHHhcCCCEE
Confidence 35899999999999999999999986643 3344442 23344444 367889999999888777 67788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
++|+|+++..++.....++..+....... ++|+++++||+|+..
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~ 129 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLA--GVPVLVFANKQDLAT 129 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECCCCcc
Confidence 99999999999988888887766543222 799999999999865
No 347
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.63 E-value=6.5e-15 Score=159.52 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CCCC-----C---------CCC-CCCeeecccc---cCCceeEEEEeCCCCccc
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADT--FPAN-----V---------PPV-LPPTRLPEDF---YPDRVPITIIDTPSSVED 76 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~--~~~~-----~---------~~~-~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~ 76 (573)
-+|+|+|+.++|||||+.+|+... +... + .++ .........+ ++.++.++||||||+.++
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 379999999999999999998642 1110 0 010 0000111122 334688999999999999
Q ss_pred hhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc-C
Q 008219 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI-E 155 (573)
Q Consensus 77 ~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~ 155 (573)
...+..+++.+|++|+|+|+++......... |.... . .++|+++|+||+|+.... .+.....+...++.. .
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~~-~--~~lpiIvViNKiDl~~a~----~~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLAL-E--NDLEIIPVLNKIDLPAAD----PERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHH-H--CCCCEEEEEECCCCCccc----HHHHHHHHHHHhCCCcc
Confidence 9888999999999999999998766555442 44332 2 278999999999986541 122223343434321 1
Q ss_pred eEEEecCCCCCCchhHHHHHHHHHhCCC
Q 008219 156 TCIECSALKQIQVPEVFYYAQKAVLHPT 183 (573)
Q Consensus 156 ~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 183 (573)
.++++||++|.|++++++.+.+.+..|.
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 4899999999999999999998765553
No 348
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.63 E-value=4.3e-15 Score=143.68 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=69.6
Q ss_pred ccchhhhHhhhccCCEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhc
Q 008219 74 VEDRGKLGEELRRADAVVLTYACDRPE-TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR 152 (573)
Q Consensus 74 ~~~~~~~~~~~~~ad~il~v~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 152 (573)
+++..+.+.+++++|++++|+|++++. ++..+.. |+..+... ++|+++|+||+|+... +... .+....+ ...+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r-~l~~~~~~--~i~~vIV~NK~DL~~~-~~~~-~~~~~~~-~~~g 97 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR-FLVVAEAQ--NIEPIIVLNKIDLLDD-EDME-KEQLDIY-RNIG 97 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHH-HHHHHHHC--CCCEEEEEECcccCCC-HHHH-HHHHHHH-HHCC
Confidence 456667778999999999999999887 8888874 88777653 8999999999999754 2221 1222222 2333
Q ss_pred ccCeEEEecCCCCCCchhHHHH
Q 008219 153 EIETCIECSALKQIQVPEVFYY 174 (573)
Q Consensus 153 ~~~~~~~~Sa~~~~gi~~l~~~ 174 (573)
.+++++||++|.|++++++.
T Consensus 98 --~~v~~~SAktg~gi~eLf~~ 117 (245)
T TIGR00157 98 --YQVLMTSSKNQDGLKELIEA 117 (245)
T ss_pred --CeEEEEecCCchhHHHHHhh
Confidence 27999999999999998864
No 349
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.63 E-value=2.1e-15 Score=142.89 Aligned_cols=122 Identities=18% Similarity=0.213 Sum_probs=87.0
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChh---------HHHhhhc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEE---------AVAKLLS 495 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~---------~~~~~~~ 495 (573)
.+..++|+|+|++|||||||+|++++........+..+.......+.+. +...+.+|||+|.. .+...
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~-- 114 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP-DGREVLLTDTVGFIRDLPHQLVEAFRST-- 114 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec-CCceEEEeCCCccccCCCHHHHHHHHHH--
Confidence 3556899999999999999999999987543332333333444445555 33478899999962 22221
Q ss_pred cccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 496 NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 496 ~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
...+..+|++++|+|++++.++.....|...+...... ++|+++|+||+|+...
T Consensus 115 -~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~---~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 115 -LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE---DIPMILVLNKIDLLDD 168 (204)
T ss_pred -HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC---CCCEEEEEEccccCCh
Confidence 12467899999999999998888777666655544322 7899999999999764
No 350
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.63 E-value=3.8e-15 Score=135.65 Aligned_cols=112 Identities=16% Similarity=0.139 Sum_probs=76.0
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCC---CCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFS---DNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
.|+++|++|||||||+++|.+.... ....+..+.......+... ....+.+|||+|++.+... ...+++.+|++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~--~~~~~~~ad~i 78 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP-SGKRLGFIDVPGHEKFIKN--MLAGAGGIDLV 78 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec-CCcEEEEEECCChHHHHHH--HHhhhhcCCEE
Confidence 5899999999999999999975322 1122223333333334443 2457889999999988665 55678899999
Q ss_pred EEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 507 VFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 507 ilv~D~~~---~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
++|+|+++ ..+++.+. .+.... ..|+++|+||+|+...
T Consensus 79 i~V~d~~~~~~~~~~~~~~----~~~~~~-----~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 79 LLVVAADEGIMPQTREHLE----ILELLG-----IKRGLVVLTKADLVDE 119 (164)
T ss_pred EEEEECCCCccHhHHHHHH----HHHHhC-----CCcEEEEEECccccCH
Confidence 99999987 33333222 122111 3499999999999754
No 351
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.63 E-value=3.5e-15 Score=140.70 Aligned_cols=121 Identities=21% Similarity=0.298 Sum_probs=88.5
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccc-cEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC-DIAVF 508 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~-d~vil 508 (573)
+|+++|++|||||||+++|.++.+...+.++ +...........+....+.+||++|+.++... ...+++.+ +++|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~--~~~~~~~~~~~vV~ 78 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDK--LLETLKNSAKGIVF 78 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHH--HHHHHhccCCEEEE
Confidence 5899999999999999999998776554332 22222111221123567889999999998877 67788888 99999
Q ss_pred EEeCCCh-hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 509 VHDSSDE-SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 509 v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
|+|+++. .++.....++..+.........++|++||+||+|+...
T Consensus 79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9999998 67888877776654321111118999999999998654
No 352
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.62 E-value=1.9e-15 Score=141.87 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=87.4
Q ss_pred EEEEEEcCCCCChhHHHHHhhC--CCCCCCC------------CCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhh
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLG--RPFSDNY------------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL 494 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~ 494 (573)
-+|+++|.+|||||||+++|++ +.+...+ ..+.+.........+..+...+.+|||+|++.|...
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~- 81 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE- 81 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH-
Confidence 3799999999999999999997 4443222 111222233333334445678899999999999887
Q ss_pred ccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc--chhhHHHHH
Q 008219 495 SNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM--AIQDSTRVF 564 (573)
Q Consensus 495 ~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~ 564 (573)
...+++.+|++++|||+++. .+.....++..+... ++|+++|+||+|+...+. ..++..++.
T Consensus 82 -~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~~------~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~ 145 (194)
T cd01891 82 -VERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALEL------GLKPIVVINKIDRPDARPEEVVDEVFDLF 145 (194)
T ss_pred -HHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHHc------CCCEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 77889999999999999874 233334444444332 789999999999965332 234444444
No 353
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=3.4e-15 Score=150.30 Aligned_cols=140 Identities=15% Similarity=0.076 Sum_probs=98.8
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhH-------HHhhhccccccc
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA-------VAKLLSNKDSLA 501 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~-------~~~~~~~~~~~~ 501 (573)
..|++||.||||||||+|+|.+.+......+-.|.......+.+. +...+.+||++|.-. +... ...+++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~--flrhie 235 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHR--FLKHIE 235 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHH--HHHHhh
Confidence 479999999999999999999876543333434444555555554 456789999999521 1111 234567
Q ss_pred cccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 502 ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 502 ~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++++++|+|+++.++++....|..++..+.+... ++|+++|+||+|+.... ......+.++++.+.++|
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~-~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~ 306 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELA-DKPRILVLNKIDLLDEEEEREKRAALELAALGGPVF 306 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcc-cCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEE
Confidence 89999999999988889999999998877643211 78999999999997544 223345555555555543
No 354
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.62 E-value=4.6e-15 Score=141.35 Aligned_cols=111 Identities=21% Similarity=0.196 Sum_probs=80.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CCC------CCCee----ecccc---cCCceeEEEEeCCCC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANV-----------PPV------LPPTR----LPEDF---YPDRVPITIIDTPSS 73 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~-----------~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~ 73 (573)
+|+|+|+.|+|||||+++|+........ ... .+.+. ....+ ....+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999976543321 000 00000 00111 234588999999999
Q ss_pred ccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 008219 74 VEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLR 132 (573)
Q Consensus 74 ~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~ 132 (573)
.++......++..+|++++|+|+++..+.... .++..+... ++|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~--~~~~~~~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE--RLIRHAILE--GLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccC
Confidence 99888888899999999999999887665432 255555443 68999999999986
No 355
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.1e-15 Score=132.97 Aligned_cols=119 Identities=24% Similarity=0.273 Sum_probs=103.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
....+|+++|-.|+||||++++|..++...+ .||.+ +.+..+.+. ...+.+||..|+++++.+ ++.|+++.++
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~yk--n~~f~vWDvGGq~k~R~l--W~~Y~~~t~~ 87 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYK--NISFTVWDVGGQEKLRPL--WKHYFQNTQG 87 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEc--ceEEEEEecCCCcccccc--hhhhccCCcE
Confidence 4568999999999999999999998887765 57776 566667665 578999999999999999 9999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
+|+|+|++|++.+.+....+..+....... +.|+++.+||.|++..
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~--~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPELR--NAPLLVFANKQDLPGA 133 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccC--CceEEEEechhhcccc
Confidence 999999999999999998888877765533 8999999999999864
No 356
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=5.5e-15 Score=122.75 Aligned_cols=160 Identities=13% Similarity=0.154 Sum_probs=122.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
.++++|+++|-.++||||++..|..+..+...|++.... ..+..+++.+++||.+|++..+..+..|+....++|||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnv---etVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV---ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcccccccceeE---EEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 468999999999999999999999888776666532211 23446678999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc-cCeEEEecCCCCCCchhH
Q 008219 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE-IETCIECSALKQIQVPEV 171 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 171 (573)
+|..++...++.++++...+.... .+.|+++.+||-|+........+.+. ..+.. ... .=.+.++||.+|.|+.|-
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~-leLe~-~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDK-LELER-IRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHH-hcccc-ccCCccEeeccccccchhHHHH
Confidence 999999999998888888875533 47899999999999987211111111 11111 111 014788999999999999
Q ss_pred HHHHHHH
Q 008219 172 FYYAQKA 178 (573)
Q Consensus 172 ~~~i~~~ 178 (573)
+.++.+.
T Consensus 170 lswlsnn 176 (180)
T KOG0071|consen 170 LSWLSNN 176 (180)
T ss_pred HHHHHhh
Confidence 9998764
No 357
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.62 E-value=2.8e-15 Score=152.28 Aligned_cols=120 Identities=20% Similarity=0.230 Sum_probs=87.9
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCCh---------hHHHhhhcc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE---------EAVAKLLSN 496 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~---------~~~~~~~~~ 496 (573)
+..++|+++|.+|||||||+|+|++........+..|.+.....+.++ ++..+.+|||+|. +.|.. +
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~-~~~~i~l~DT~G~~~~l~~~lie~f~~---t 262 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP-DGGEVLLTDTVGFIRDLPHELVAAFRA---T 262 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC-CCceEEEEecCcccccCCHHHHHHHHH---H
Confidence 355899999999999999999999987433333334445555666665 3457889999996 23333 2
Q ss_pred ccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 497 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 497 ~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
...+.+||++++|+|++++.+++....|...+..... . +.|+++|+||+|+..
T Consensus 263 le~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~-~--~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 263 LEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA-E--DIPQLLVYNKIDLLD 315 (351)
T ss_pred HHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc-C--CCCEEEEEEeecCCC
Confidence 3457899999999999999888777655544443322 1 789999999999965
No 358
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.62 E-value=1.2e-14 Score=136.58 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=101.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CC--CCCCCeeeccccc-CCceeEEEEeCCCCccchhhhHh-----hhcc
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN-VP--PVLPPTRLPEDFY-PDRVPITIIDTPSSVEDRGKLGE-----ELRR 86 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~-----~~~~ 86 (573)
++||+++|++|||||||+|+|++...... .. +...++.....+. .....+.+|||||.......... .+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 47999999999999999999998654322 11 1111121111121 12346899999998654332222 3678
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc----------ccHHHHHHHHHHHhc----
Q 008219 87 ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ----------VSLEQVMMPIMQQFR---- 152 (573)
Q Consensus 87 ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~----------~~~~~~~~~~~~~~~---- 152 (573)
+|++++|.| .++...+..|++.++.. +.|+++|+||+|+...... ...++....+...++
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 154 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV 154 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 999999855 33555555688888876 7899999999998542110 111222222232232
Q ss_pred ccCeEEEecCC--CCCCchhHHHHHHHHHh
Q 008219 153 EIETCIECSAL--KQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 153 ~~~~~~~~Sa~--~~~gi~~l~~~i~~~~~ 180 (573)
...++|.+|+. .+.|+..+.+.++..+.
T Consensus 155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred CCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 12379999999 67899999998887653
No 359
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.61 E-value=4.8e-15 Score=135.73 Aligned_cols=133 Identities=17% Similarity=0.114 Sum_probs=86.0
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHH----------Hhhhccccc
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV----------AKLLSNKDS 499 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~----------~~~~~~~~~ 499 (573)
+|+++|.+|||||||+|+|.+..+.....+..+.......+.. +...+.+|||+|.... ..+ . ..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~--~-~~ 76 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAI--T-AL 76 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHH--H-HH
Confidence 6999999999999999999998764332222222233333332 3468899999997321 111 0 11
Q ss_pred cccccEEEEEEeCCChhhH--HHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 500 LAACDIAVFVHDSSDESSW--KRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 500 ~~~~d~vilv~D~~~~~s~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
...+|++++|+|+++..++ +....|+..+..... +.|+++|+||+|+...+... +.+++++..+.++|
T Consensus 77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~----~~pvilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~ 146 (168)
T cd01897 77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK----NKPVIVVLNKIDLLTFEDLS-EIEEEEELEGEEVL 146 (168)
T ss_pred HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC----cCCeEEEEEccccCchhhHH-HHHHhhhhccCceE
Confidence 1236899999999987654 556677777765432 79999999999997543222 24455554455443
No 360
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.61 E-value=8.5e-15 Score=123.45 Aligned_cols=141 Identities=21% Similarity=0.245 Sum_probs=109.4
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCC--CCCCcccEEEEEEEcCCC-eEEEEEEecCChhHH-Hhhhcccccccc
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY--TPTTDERYAVNVVDQPGG-TKKTVVLREIPEEAV-AKLLSNKDSLAA 502 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~i~dt~G~~~~-~~~~~~~~~~~~ 502 (573)
+..|++|+|-.+||||+++.+++.++-.... .+|+.. ..+..+..+.+ ...+.++||+|.... ..+ .+.|+.-
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~rgarE~l~lyDTaGlq~~~~eL--prhy~q~ 84 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETDRGAREQLRLYDTAGLQGGQQEL--PRHYFQF 84 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecCCChhheEEEeecccccCchhhh--hHhHhcc
Confidence 3479999999999999999999876554332 444443 44455666644 347779999997665 445 6778899
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 503 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 503 ~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+|++++|||..+++||+.++..-.+|....... .+|+++++||+|+.+.+ +..+.++.||+.-.+..|
T Consensus 85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKK--EvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~ 153 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKK--EVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLW 153 (198)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhhccccc--cccEEEEechhhcccchhcCHHHHHHHHhhhheeEE
Confidence 999999999999999999988877777754433 89999999999997544 668889999988776654
No 361
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.61 E-value=5.8e-15 Score=148.60 Aligned_cols=143 Identities=17% Similarity=0.056 Sum_probs=100.1
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhH----HHhh-hcccccccc
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----VAKL-LSNKDSLAA 502 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~----~~~~-~~~~~~~~~ 502 (573)
...|++||.||||||||+++|.+.+......+..|....+..+.+. +...+.+||++|... ...+ ......+++
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 3479999999999999999999876543333444555555556655 446889999999631 1111 002234578
Q ss_pred ccEEEEEEeCCCh---hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 503 CDIAVFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 503 ~d~vilv~D~~~~---~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
++++++|+|+++. .+++.+..|..++..+.... .++|++||+||+|+.......+..++++++++.+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l-~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi 307 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPEL-AEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVF 307 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhh-ccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEE
Confidence 9999999999986 67888888888777654321 179999999999997654444556667766665543
No 362
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.60 E-value=1.1e-14 Score=138.73 Aligned_cols=153 Identities=20% Similarity=0.172 Sum_probs=102.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC------------CCCee------ec--------------------cccc
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPV------------LPPTR------LP--------------------EDFY 59 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~------------~~~~~------~~--------------------~~~~ 59 (573)
||+++|+.++|||||+++|..+.+....... .+.+. .. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999976553321100 00000 00 0111
Q ss_pred CCceeEEEEeCCCCccchhhhHhhhc--cCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 008219 60 PDRVPITIIDTPSSVEDRGKLGEELR--RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ 137 (573)
Q Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~--~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~ 137 (573)
..+..+.++||||++.+.......+. .+|++++|+|++.... .....++..+... ++|+++|+||+|+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~~--~ip~ivvvNK~D~~~~~-- 154 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALAL--NIPVFVVVTKIDLAPAN-- 154 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHHc--CCCEEEEEECccccCHH--
Confidence 33567999999999888665555554 7999999999876543 3333467777666 78999999999986541
Q ss_pred ccHHHHHHHHHHHh---------------------------cccCeEEEecCCCCCCchhHHHHHHH
Q 008219 138 VSLEQVMMPIMQQF---------------------------REIETCIECSALKQIQVPEVFYYAQK 177 (573)
Q Consensus 138 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~Sa~~~~gi~~l~~~i~~ 177 (573)
........+...+ ....|++.+||.+|.|+++|...+..
T Consensus 155 -~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 -ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred -HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 2222233333322 22348999999999999999987643
No 363
>PRK10218 GTP-binding protein; Provisional
Probab=99.60 E-value=1.7e-14 Score=155.46 Aligned_cols=163 Identities=18% Similarity=0.158 Sum_probs=111.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC--CCCCCCC------------CCCCCee--ecccccCCceeEEEEeCCCCccchhh
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAAD--TFPANVP------------PVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGK 79 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~--~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~ 79 (573)
--+|+|+|+.++|||||+++|+.. .+..... ...+.+. ....+.++++++++|||||+.++...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 347999999999999999999973 3322211 0111111 23345577899999999999999999
Q ss_pred hHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc-----c
Q 008219 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE-----I 154 (573)
Q Consensus 80 ~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-----~ 154 (573)
+..+++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+.........++ +..+...++. .
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~~--gip~IVviNKiD~~~a~~~~vl~e-i~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFAY--GLKPIVVINKVDRPGARPDWVVDQ-VFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHHc--CCCEEEEEECcCCCCCchhHHHHH-HHHHHhccCccccccC
Confidence 99999999999999998875433222 244444444 789999999999876421111111 2222211111 1
Q ss_pred CeEEEecCCCCC----------CchhHHHHHHHHHhCCC
Q 008219 155 ETCIECSALKQI----------QVPEVFYYAQKAVLHPT 183 (573)
Q Consensus 155 ~~~~~~Sa~~~~----------gi~~l~~~i~~~~~~~~ 183 (573)
.|++.+||++|. |+..+++.+++.+..|.
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 278999999998 58889988888766553
No 364
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=3.7e-14 Score=124.84 Aligned_cols=160 Identities=19% Similarity=0.182 Sum_probs=119.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCC-------CCCCCCCeeeccccc----CCceeEEEEeCCCCccchhhh
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-------VPPVLPPTRLPEDFY----PDRVPITIIDTPSSVEDRGKL 80 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~ 80 (573)
......||+|+|+-++||||++.++.....+.. .......++..+++. .++..+.++|||||+++..++
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 345678999999999999999999987663111 111111234333333 445789999999999999999
Q ss_pred HhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEe
Q 008219 81 GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIEC 160 (573)
Q Consensus 81 ~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (573)
+.+.++++++++++|.+.+..++. . .++..+....+ +|+++++||.|+... ...++..+.+...... .+++++
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~~a-~-~ii~f~~~~~~-ip~vVa~NK~DL~~a---~ppe~i~e~l~~~~~~-~~vi~~ 158 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITFHA-E-EIIDFLTSRNP-IPVVVAINKQDLFDA---LPPEKIREALKLELLS-VPVIEI 158 (187)
T ss_pred HHHhCCcceEEEEEecCCCcchHH-H-HHHHHHhhccC-CCEEEEeeccccCCC---CCHHHHHHHHHhccCC-Cceeee
Confidence 999999999999999999998833 3 37777766532 999999999999986 3333333333333222 389999
Q ss_pred cCCCCCCchhHHHHHHHH
Q 008219 161 SALKQIQVPEVFYYAQKA 178 (573)
Q Consensus 161 Sa~~~~gi~~l~~~i~~~ 178 (573)
+|..+.+..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999999888765
No 365
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.60 E-value=1.1e-14 Score=131.26 Aligned_cols=121 Identities=26% Similarity=0.349 Sum_probs=94.2
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|.+|+|||||++++.+..+...+.++.+.......+..++....+.+||++|+..+..+ +....+.++.++.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~~~~i~ 79 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAI--RRLYYRAVESSLR 79 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHH--HHHHHhhhhEEEE
Confidence 69999999999999999999998866666666666565555666543467889999999888777 6667788999999
Q ss_pred EEeCCCh-hhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 509 VHDSSDE-SSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 509 v~D~~~~-~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
++|.... .++.... .+...+...... +.|+++|+||+|+...+
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~ 124 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAES---NVPIILVGNKIDLRDAK 124 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhccc---CCcEEEEEEcccCCcch
Confidence 9999877 6676665 566655554322 68999999999997644
No 366
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.59 E-value=3.7e-14 Score=128.26 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=57.8
Q ss_pred hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEec
Q 008219 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (573)
Q Consensus 82 ~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (573)
..++++|++++|+|++++.+... ..+.+.+.....++|+++|+||+|+... .........+.+.+. . ..+.+|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~---~~~~~~~~~~~~~~~-~-~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPT---WVTARWVKILSKEYP-T-IAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCH---HHHHHHHHHHhcCCc-E-EEEEee
Confidence 46789999999999988743322 1244555444346899999999999754 111222222222221 1 257899
Q ss_pred CCCCCCchhHHHHHHH
Q 008219 162 ALKQIQVPEVFYYAQK 177 (573)
Q Consensus 162 a~~~~gi~~l~~~i~~ 177 (573)
|+++.|++++++.+..
T Consensus 77 a~~~~~~~~L~~~l~~ 92 (157)
T cd01858 77 INNPFGKGSLIQLLRQ 92 (157)
T ss_pred ccccccHHHHHHHHHH
Confidence 9999999988876643
No 367
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.59 E-value=1.7e-14 Score=155.70 Aligned_cols=161 Identities=19% Similarity=0.189 Sum_probs=111.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--CCCCCC---C---------CCCCee--ecccccCCceeEEEEeCCCCccchhhhH
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADT--FPANVP---P---------VLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLG 81 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~--~~~~~~---~---------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (573)
+|+|+|+.++|||||+++|+... +..... . ..+.|. ....+.+++++++||||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 59999999999999999998632 221110 0 000111 2234557789999999999999988889
Q ss_pred hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc-----cCe
Q 008219 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE-----IET 156 (573)
Q Consensus 82 ~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 156 (573)
.+++.+|++++|+|+++... .....|+..+... ++|+++|+||+|+... +.....+.+..+...++. ..+
T Consensus 83 ~~l~~aD~alLVVDa~~G~~--~qT~~~l~~a~~~--~ip~IVviNKiD~~~a-~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPM--PQTRFVLKKALEL--GLKPIVVINKIDRPSA-RPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCc--HHHHHHHHHHHHC--CCCEEEEEECCCCCCc-CHHHHHHHHHHHHHhhccccccccCc
Confidence 99999999999999886432 2222466666665 7899999999998754 111111222222222211 127
Q ss_pred EEEecCCCCC----------CchhHHHHHHHHHhCCC
Q 008219 157 CIECSALKQI----------QVPEVFYYAQKAVLHPT 183 (573)
Q Consensus 157 ~~~~Sa~~~~----------gi~~l~~~i~~~~~~~~ 183 (573)
++.+||++|. |+..+++.+.+.+..|.
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 9999999996 79999999998776553
No 368
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2e-15 Score=130.45 Aligned_cols=164 Identities=16% Similarity=0.178 Sum_probs=118.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCC--------CCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhh
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN--------VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEEL 84 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 84 (573)
.+..+.|+|+|..|+|||||+.++-.. |... ..++.+. ....+.....++.+||.+|++...+++..++
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~-~~~~~~~l~~~ki~~tvgL--nig~i~v~~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTD-FSKAYGGLNPSKITPTVGL--NIGTIEVCNAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHH-HHhhhcCCCHHHeecccce--eecceeeccceeEEEEcCChHHHHHHHHHHH
Confidence 356789999999999999999987532 2211 2222111 2233344467899999999999999999999
Q ss_pred ccCCEEEEEEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHH--HHHHHHhcc-cCeEEEe
Q 008219 85 RRADAVVLTYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVM--MPIMQQFRE-IETCIEC 160 (573)
Q Consensus 85 ~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~ 160 (573)
..+|++++|+|+++++.++...+.+-+.+... -.++|+++.+||.|+.+. ....+.. .......+. ..++.+|
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~---~~~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA---MEAAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh---hhHHHHHHHhhhhhhcCCccCccccc
Confidence 99999999999999998888776454444332 248999999999999886 2222211 111222222 2379999
Q ss_pred cCCCCCCchhHHHHHHHHHhCC
Q 008219 161 SALKQIQVPEVFYYAQKAVLHP 182 (573)
Q Consensus 161 Sa~~~~gi~~l~~~i~~~~~~~ 182 (573)
||.+|+||++-..++++.+...
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999876543
No 369
>PRK15494 era GTPase Era; Provisional
Probab=99.59 E-value=9.8e-15 Score=148.16 Aligned_cols=130 Identities=17% Similarity=0.239 Sum_probs=87.9
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEE-EEEcCCCeEEEEEEecCChhH-HHh----hhc-ccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVN-VVDQPGGTKKTVVLREIPEEA-VAK----LLS-NKD 498 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~dt~G~~~-~~~----~~~-~~~ 498 (573)
.+.++|+++|++|||||||+|+|++..+..++..+.+++.... .+..+ ...+.+|||+|... +.. +.+ ...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~--~~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLK--DTQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeC--CeEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 3457999999999999999999999988766655555554433 33333 45688999999732 211 111 223
Q ss_pred ccccccEEEEEEeCCChhhHHHHHHHH-HHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHc
Q 008219 499 SLAACDIAVFVHDSSDESSWKRATELL-VEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFL 567 (573)
Q Consensus 499 ~~~~~d~vilv~D~~~~~s~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 567 (573)
+++.||++++|+|+++. |.....++ ..+... +.|.++|+||+|+... ...+..+++++.
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~------~~p~IlViNKiDl~~~--~~~~~~~~l~~~ 187 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL------NIVPIFLLNKIDIESK--YLNDIKAFLTEN 187 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc------CCCEEEEEEhhcCccc--cHHHHHHHHHhc
Confidence 57899999999998764 66665544 444332 5678899999999653 234455555443
No 370
>PTZ00099 rab6; Provisional
Probab=99.59 E-value=1.6e-14 Score=132.86 Aligned_cols=117 Identities=15% Similarity=0.215 Sum_probs=99.0
Q ss_pred CCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHh
Q 008219 451 RPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVAS 530 (573)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~ 530 (573)
+.|...+.+|.+.++..+.+.+.++...+.||||+|++.+..+ +..++++||++++|||++++.||+.+..|+..+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~--~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~ 80 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSL--IPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN 80 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhc--cHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 4566778889988887777888877789999999999999998 88899999999999999999999999999988876
Q ss_pred cCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 531 YGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 531 ~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
.... ++|++|||||+||...+ +..+++..+++.+++.||
T Consensus 81 ~~~~---~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~ 120 (176)
T PTZ00099 81 ERGK---DVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFH 120 (176)
T ss_pred hcCC---CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 5422 78999999999997543 556788888888887765
No 371
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.59 E-value=2e-14 Score=149.88 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=102.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCC---C-CCCC----------------CC---CeeecccccC------Ccee
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPA---N-VPPV----------------LP---PTRLPEDFYP------DRVP 64 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~---~-~~~~----------------~~---~~~~~~~~~~------~~~~ 64 (573)
++.++|+++|.+++|||||+++|.+..... . ..+. .+ .++....... .+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 567999999999999999999997532111 0 0000 00 0000000011 2467
Q ss_pred EEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHH
Q 008219 65 ITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVM 144 (573)
Q Consensus 65 ~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~ 144 (573)
+.+|||||++++...+...+..+|++++|+|+++........+ .+..+...+ ..|+++|+||+|+..........+.+
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~~g-i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEIIG-IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHHcC-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 9999999999888877788889999999999986431111111 222333332 35799999999997641111111112
Q ss_pred HHHHHHh-cccCeEEEecCCCCCCchhHHHHHHHHHh
Q 008219 145 MPIMQQF-REIETCIECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 145 ~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
..+.... ....+++++||++|.|++++++.+.+.+.
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 2222221 11237999999999999999999987543
No 372
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.59 E-value=1.7e-14 Score=124.63 Aligned_cols=136 Identities=22% Similarity=0.262 Sum_probs=90.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCcc----chhhhHhhhccCCEEEEE
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVE----DRGKLGEELRRADAVVLT 93 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----~~~~~~~~~~~ad~il~v 93 (573)
||+++|+.|+|||||+++|.+........ ..+.. .=.++||||-.- +...+-....+||+|++|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~KT---------q~i~~---~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll 70 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKKT---------QAIEY---YDNTIDTPGEYIENPRFYHALIVTAQDADVVLLL 70 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCcc---------ceeEe---cccEEECChhheeCHHHHHHHHHHHhhCCEEEEE
Confidence 79999999999999999999865422111 11111 125599999421 222233557799999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 94 YACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
.|++++.+.-.-. +. .. -++|+|-|+||+|+..+. ...+. ...+.+.-|. ..+|++|+.+|+||++|.+
T Consensus 71 ~dat~~~~~~pP~--fa----~~-f~~pvIGVITK~Dl~~~~--~~i~~-a~~~L~~aG~-~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 71 QDATEPRSVFPPG--FA----SM-FNKPVIGVITKIDLPSDD--ANIER-AKKWLKNAGV-KEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred ecCCCCCccCCch--hh----cc-cCCCEEEEEECccCccch--hhHHH-HHHHHHHcCC-CCeEEEECCCCcCHHHHHH
Confidence 9999876533211 22 21 268999999999999431 12222 2334444443 4689999999999999998
Q ss_pred HHH
Q 008219 174 YAQ 176 (573)
Q Consensus 174 ~i~ 176 (573)
.+.
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 763
No 373
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.58 E-value=7.7e-15 Score=132.79 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=88.0
Q ss_pred EEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhc----ccccc--ccccEE
Q 008219 433 VFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLS----NKDSL--AACDIA 506 (573)
Q Consensus 433 vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~----~~~~~--~~~d~v 506 (573)
++|.+|||||||++++.+........+..+.......+.+++ ..+.+|||+|.+.+..... ...++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999999864444444445444445565552 5788999999865443100 23334 499999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
++|+|+++..+. ..+...+... ++|+++|+||+|+..........+.+++.++++++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 135 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLEL------GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVV 135 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHHc------CCCEEEEEehhhhcccccchhhHHHHHHhhCCCeE
Confidence 999999876432 2344444432 79999999999997654333445677777777664
No 374
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.58 E-value=1.2e-14 Score=152.90 Aligned_cols=160 Identities=19% Similarity=0.097 Sum_probs=102.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------CCC-----------------CCCCee--ecccccCC
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADT--FPAN----------VPP-----------------VLPPTR--LPEDFYPD 61 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~--~~~~----------~~~-----------------~~~~~~--~~~~~~~~ 61 (573)
.++.++|+++|+.++|||||+++|+... +... ..+ ..+.|. ....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 4567999999999999999999998632 2100 000 001111 22334566
Q ss_pred ceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCccc--c
Q 008219 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELST-FWLPELRRLEVKVPVIVVGCKLDLRDENQQ--V 138 (573)
Q Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~-~~~~~l~~~~~~~piilv~NK~D~~~~~~~--~ 138 (573)
++.+.||||||++.+.......+..+|++++|+|+++..+...... .+...++.. ...|+++|+||+|+...... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHHH
Confidence 7899999999998887666667899999999999998754321111 122223333 24579999999999752111 0
Q ss_pred cHHHHHHHHHHHhcc---cCeEEEecCCCCCCchhHHH
Q 008219 139 SLEQVMMPIMQQFRE---IETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 139 ~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~ 173 (573)
...+.+..+.+.++. ..++++|||++|.|+.+++.
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 112233334444432 13799999999999997553
No 375
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.57 E-value=4e-14 Score=153.62 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCCC-CCCCCCee-ec-ccc-cCCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADT---FPANV-PPVLPPTR-LP-EDF-YPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~---~~~~~-~~~~~~~~-~~-~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
+-|+++|+.++|||||+++|++.. +.... .+ .|. .. ..+ ..++..+.+|||||++.+.......+..+|+
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rG---iTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~ 77 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRG---MTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDH 77 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCC---ceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCE
Confidence 358999999999999999998643 22221 12 111 11 111 1245678999999999887777788999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccccHHHHHHHHHHHhcc-cCeEEEecCCCCCC
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE-IETCIECSALKQIQ 167 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~g 167 (573)
+++|+|++....-+.. ..+..++.. ++| +++|+||+|+.+..+.....+.+..+....+. ..+++++||++|.|
T Consensus 78 ~lLVVda~eg~~~qT~--ehl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 78 ALLVVACDDGVMAQTR--EHLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 9999998874222211 233444444 456 68999999997641111112222223222221 13799999999999
Q ss_pred chhHHHHHHHH
Q 008219 168 VPEVFYYAQKA 178 (573)
Q Consensus 168 i~~l~~~i~~~ 178 (573)
+++|++.+...
T Consensus 154 I~~L~~~L~~~ 164 (614)
T PRK10512 154 IDALREHLLQL 164 (614)
T ss_pred CHHHHHHHHHh
Confidence 99999998764
No 376
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.57 E-value=6.5e-14 Score=151.19 Aligned_cols=156 Identities=21% Similarity=0.277 Sum_probs=101.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC----CCCeeeccccc----CCc-----e-----eEEEEeCCCCccc
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPV----LPPTRLPEDFY----PDR-----V-----PITIIDTPSSVED 76 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~----~~~~~~~~~~~----~~~-----~-----~~~i~Dt~G~~~~ 76 (573)
+...|+|+|++|+|||||+++|.+.......++. .+.+..+.... ... . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 3457999999999999999999876655444431 11111111110 000 1 2789999999999
Q ss_pred hhhhHhhhccCCEEEEEEeCCC---cccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc---c-------------
Q 008219 77 RGKLGEELRRADAVVLTYACDR---PETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ---Q------------- 137 (573)
Q Consensus 77 ~~~~~~~~~~ad~il~v~D~~~---~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~---~------------- 137 (573)
...+...+..+|++++|+|+++ +++++.+ ..++.. ++|+++|+||+|+..... .
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 8888888899999999999987 4444433 333333 789999999999852100 0
Q ss_pred --ccHHHHHHHH---HH-------------HhcccCeEEEecCCCCCCchhHHHHHHH
Q 008219 138 --VSLEQVMMPI---MQ-------------QFREIETCIECSALKQIQVPEVFYYAQK 177 (573)
Q Consensus 138 --~~~~~~~~~~---~~-------------~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 177 (573)
...++....+ .. .++...+++++||++|.|++++++.+..
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0000011111 11 1122237999999999999999988754
No 377
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.57 E-value=5.5e-15 Score=148.97 Aligned_cols=119 Identities=22% Similarity=0.277 Sum_probs=90.8
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHh------hhccccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK------LLSNKDS 499 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~------~~~~~~~ 499 (573)
+.-+|++++|+||||||||+|+|++.++.++++.++|||+.+.....- ++..+.++||+|.+.-.. +-+....
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 455899999999999999999999999999999999999998754433 567889999999543211 1124456
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 500 LAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 500 ~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
++.||.+++|+|++.+ ....+..+.+. ... +.|+++|.||.||..+
T Consensus 294 i~~ADlvL~v~D~~~~--~~~~d~~~~~~--~~~----~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 294 IEEADLVLFVLDASQP--LDKEDLALIEL--LPK----KKPIIVVLNKADLVSK 339 (454)
T ss_pred HHhCCEEEEEEeCCCC--CchhhHHHHHh--ccc----CCCEEEEEechhcccc
Confidence 7899999999999986 22223222221 111 7999999999999864
No 378
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.56 E-value=9.1e-14 Score=131.90 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=79.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCC----------------CCCeeeccccc--------CCceeEEEEeCC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPAN--VPPV----------------LPPTRLPEDFY--------PDRVPITIIDTP 71 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~--~~~~----------------~~~~~~~~~~~--------~~~~~~~i~Dt~ 71 (573)
+|+|+|+.++|||||+.+|+...-... ..+. .........+. ..++.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 589999999999999999986432111 1110 00000112222 237889999999
Q ss_pred CCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 008219 72 SSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLR 132 (573)
Q Consensus 72 G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~ 132 (573)
|+.++......+++.+|++++|+|++...+.+... .+...... ++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~--~l~~~~~~--~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET--VLRQALKE--RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEECCCcc
Confidence 99999999999999999999999999876655432 34444333 68999999999986
No 379
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.56 E-value=1.9e-14 Score=119.66 Aligned_cols=132 Identities=25% Similarity=0.303 Sum_probs=107.7
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
+..+||.++|-.|+|||||+..|.+...... .||.+ +.++.+... +...+.+||..|+...+.+ |..||.+.|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hl-tpT~G--Fn~k~v~~~-g~f~LnvwDiGGqr~IRpy--WsNYyenvd~ 88 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHL-TPTNG--FNTKKVEYD-GTFHLNVWDIGGQRGIRPY--WSNYYENVDG 88 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhc-cccCC--cceEEEeec-CcEEEEEEecCCccccchh--hhhhhhccce
Confidence 5679999999999999999999999875432 24444 677888887 6788999999999999999 9999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 569 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 569 (573)
+|+|+|.+|...|+++...+.++....... .+|+.+-+||.|+.-. ...++.+.++++
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~--~vpvlIfankQdllta----a~~eeia~klnl 146 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLA--EVPVLIFANKQDLLTA----AKVEEIALKLNL 146 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhh--ccceeehhhhhHHHhh----cchHHHHHhcch
Confidence 999999999999999998888877765544 8999999999998652 234444445443
No 380
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.56 E-value=4.4e-14 Score=147.13 Aligned_cols=162 Identities=15% Similarity=0.163 Sum_probs=101.1
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCCCCCee-ec---cc------------c------cC-----
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN----VPPVLPPTR-LP---ED------------F------YP----- 60 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~----~~~~~~~~~-~~---~~------------~------~~----- 60 (573)
..++.++|+++|+.++|||||+.+|.+...... ..+ .|. .. .. + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg---~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRG---ITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSET 81 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcC---cEEEecccccccccccccCcccccccccccccccccc
Confidence 456789999999999999999999965311100 111 000 00 00 0 00
Q ss_pred -CceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccc
Q 008219 61 -DRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE-TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQV 138 (573)
Q Consensus 61 -~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~ 138 (573)
....+.||||||++.+.......+..+|++++|+|++++. ..+... .+..++... ..|+++|+||+|+.......
T Consensus 82 ~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~--~l~~l~~~~-i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 82 ELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE--HLMALDIIG-IKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred ccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH--HHHHHHHcC-CCcEEEEEEeeccccchhHH
Confidence 0367999999998887666666677789999999998653 222211 222333331 34799999999997641111
Q ss_pred cHHHHHHHHHHHh-cccCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 139 SLEQVMMPIMQQF-REIETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 139 ~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
...+.+..+.... ....+++++||++|.|+++|++.+...+
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 1111222222211 1123799999999999999999988754
No 381
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.56 E-value=1.5e-14 Score=138.29 Aligned_cols=150 Identities=18% Similarity=0.085 Sum_probs=93.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------------CCC---CCCCee--ecccccCCceeEE
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPAN--------------------------VPP---VLPPTR--LPEDFYPDRVPIT 66 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~--------------------------~~~---~~~~~~--~~~~~~~~~~~~~ 66 (573)
+|+++|++++|||||+.+|+...-... ... ..+.|. ....+...+.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999974321100 000 001111 2233446788999
Q ss_pred EEeCCCCccchhhhHhhhccCCEEEEEEeCCCccc-----HH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-cccc
Q 008219 67 IIDTPSSVEDRGKLGEELRRADAVVLTYACDRPET-----LD-ELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-QQVS 139 (573)
Q Consensus 67 i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s-----~~-~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-~~~~ 139 (573)
+|||||+..+.......++.+|++|+|+|+++... .. .... ........ ..+|+++|+||+|+.... ....
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTRE-HALLARTL-GVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHH-HHHHHHHc-CCCeEEEEEEccccccccccHHH
Confidence 99999988777666677889999999999988421 11 1111 22233333 236899999999997420 1111
Q ss_pred HHHHHHH---HHHHhcc---cCeEEEecCCCCCCch
Q 008219 140 LEQVMMP---IMQQFRE---IETCIECSALKQIQVP 169 (573)
Q Consensus 140 ~~~~~~~---~~~~~~~---~~~~~~~Sa~~~~gi~ 169 (573)
.++.... ....++. ..++++|||++|.|+.
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 2222222 2333322 1379999999999988
No 382
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.56 E-value=7.3e-15 Score=123.04 Aligned_cols=117 Identities=16% Similarity=0.203 Sum_probs=100.7
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.+.+.++|-.++|||||+|....+.+...--|+.+.+. .. +..+...+.+||.+|+..|+++ +..|++++++++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm--rk--~tkgnvtiklwD~gGq~rfrsm--WerycR~v~aiv 93 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM--RK--VTKGNVTIKLWDLGGQPRFRSM--WERYCRGVSAIV 93 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhccccccee--EE--eccCceEEEEEecCCCccHHHH--HHHHhhcCcEEE
Confidence 46899999999999999999998888776667766433 22 3336678889999999999999 999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
+|+|+++++.+...+..+..+.....-. ++|++++|||.|+..
T Consensus 94 Y~VDaad~~k~~~sr~EL~~LL~k~~l~--gip~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 94 YVVDAADPDKLEASRSELHDLLDKPSLT--GIPLLVLGNKIDLPG 136 (186)
T ss_pred EEeecCCcccchhhHHHHHHHhcchhhc--CCcEEEecccccCcc
Confidence 9999999999998888888888776655 999999999999876
No 383
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.9e-14 Score=120.16 Aligned_cols=158 Identities=15% Similarity=0.172 Sum_probs=122.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
..+.++|.++|--|+|||++.-++.-++.+...|++.. ....+..++.++++||.+|+......++.++.+.|++|+
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevvttkPtigf---nve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGF---NVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCc---CccccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 34789999999999999999999887777766665322 223344578999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHH-----HHHHHHHhcccCeEEEecCCCCC
Q 008219 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQV-----MMPIMQQFREIETCIECSALKQI 166 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~Sa~~~~ 166 (573)
|+|.+|+.........++.+++... .+..+++++||.|.... ....+. +..+.++. -.++++||.+|+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~---~t~~E~~~~L~l~~Lk~r~---~~Iv~tSA~kg~ 165 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA---LTRSEVLKMLGLQKLKDRI---WQIVKTSAVKGE 165 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh---hhHHHHHHHhChHHHhhhe---eEEEeecccccc
Confidence 9999998777666666777776633 46788899999998765 112222 12222222 378999999999
Q ss_pred CchhHHHHHHHHH
Q 008219 167 QVPEVFYYAQKAV 179 (573)
Q Consensus 167 gi~~l~~~i~~~~ 179 (573)
|+++.++|+++.+
T Consensus 166 Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 166 GLDPAMDWLQRPL 178 (182)
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998864
No 384
>COG2262 HflX GTPases [General function prediction only]
Probab=99.56 E-value=5.9e-14 Score=138.98 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=112.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCC-CCCC-CCCCCCCeeecccccCCceeEEEEeCCCCccchh--hh------Hhh
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADT-FPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG--KL------GEE 83 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~------~~~ 83 (573)
..-..|+++|-+|+|||||+|+|++.. ++.+ ...|.++|+..+.+.+ +..+.+.||-|....-. .. -..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 345689999999999999999999765 3333 3334445554444443 67899999999764321 11 145
Q ss_pred hccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecC
Q 008219 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (573)
Q Consensus 84 ~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (573)
...||+++.|+|++++.-.+.+.. ....|...+ ..+|+|+|.||+|+..+. .....+....+ ..+.+||
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~------~~~~~~~~~~~---~~v~iSA 338 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDE------EILAELERGSP---NPVFISA 338 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCch------hhhhhhhhcCC---CeEEEEe
Confidence 788999999999999976666664 566666643 479999999999987651 11122222221 5899999
Q ss_pred CCCCCchhHHHHHHHHHh
Q 008219 163 LKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 163 ~~~~gi~~l~~~i~~~~~ 180 (573)
++|.|++.|.+.|...+.
T Consensus 339 ~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 339 KTGEGLDLLRERIIELLS 356 (411)
T ss_pred ccCcCHHHHHHHHHHHhh
Confidence 999999999999888764
No 385
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.55 E-value=4.2e-14 Score=157.08 Aligned_cols=230 Identities=15% Similarity=0.056 Sum_probs=136.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCC-----------CCCee--ecccccCCceeEEEEeCCCCccc
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPAN-----VPPV-----------LPPTR--LPEDFYPDRVPITIIDTPSSVED 76 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~-----~~~~-----------~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~ 76 (573)
+--+|+|+|++|+|||||+++|+...-... ..+. .+.|. ....+.++++.+.+|||||+.++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 344799999999999999999975321111 1110 01111 22334467889999999999988
Q ss_pred hhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc--
Q 008219 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI-- 154 (573)
Q Consensus 77 ~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-- 154 (573)
......+++.+|++++|+|+++........ ++..++.. ++|+++|+||+|+... ........+...++..
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~ivviNK~D~~~~----~~~~~~~~i~~~l~~~~~ 160 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQSET--VWRQANRY--EVPRIAFVNKMDKTGA----NFLRVVNQIKQRLGANAV 160 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhHHH--HHHHHHHc--CCCEEEEEECCCCCCC----CHHHHHHHHHHHhCCCce
Confidence 888889999999999999998865554332 55556555 7899999999999865 2344455566655532
Q ss_pred CeEEEecCCCCCCchhHHHHHHHHH-hCCCC--------CCcchhhhhchhhHHHHHHHHHHhccCCCCCc-----cCch
Q 008219 155 ETCIECSALKQIQVPEVFYYAQKAV-LHPTG--------PLFDQESQALKPRCVRALKRIFILCDHDRDGA-----LSDA 220 (573)
Q Consensus 155 ~~~~~~Sa~~~~gi~~l~~~i~~~~-~~~~~--------~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~-----l~~~ 220 (573)
...+++|+..+. ..+++.+.... .++.. +...............+++.+....+...+.+ +..+
T Consensus 161 ~~~ipis~~~~~--~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~ 238 (689)
T TIGR00484 161 PIQLPIGAEDNF--IGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIE 238 (689)
T ss_pred eEEeccccCCCc--eEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHH
Confidence 136888988773 33222222111 11110 00000001111222223333333333222223 3334
Q ss_pred hhhHHhhh----------hcCCCCChhHHHHHHHHHhhhccCCc
Q 008219 221 ELNDFQVK----------CFNSPLQPSEIVGVKRVVQEKLREGV 254 (573)
Q Consensus 221 el~~~q~~----------~~~~~l~~~~i~~l~~~i~~~~~~~~ 254 (573)
++.....+ +++.+....+++.|++.|..++|+..
T Consensus 239 ~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~ 282 (689)
T TIGR00484 239 EIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPT 282 (689)
T ss_pred HHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCch
Confidence 44332222 36678888899999999999998754
No 386
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.55 E-value=7.5e-14 Score=133.31 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=111.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhh-------hHhhhc
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGK-------LGEELR 85 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~ 85 (573)
....+|++||.|+||||||+|+|++..- +..|+-| ..+..+..+.+++..++++|+||+....+. .-..++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FT-Tl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFT-TLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCce-ecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 3457899999999999999999998663 3345531 122377888899999999999998654332 336799
Q ss_pred cCCEEEEEEeCCCccc-HHHHHHHH-------------------------------------------------------
Q 008219 86 RADAVVLTYACDRPET-LDELSTFW------------------------------------------------------- 109 (573)
Q Consensus 86 ~ad~il~v~D~~~~~s-~~~~~~~~------------------------------------------------------- 109 (573)
.||++++|+|+....+ .+.+...+
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999986654 32322211
Q ss_pred ----------HHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 110 ----------LPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 110 ----------~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
.+.+.....-+|.++|.||+|+... +....+.... .++.+||+.+.|+++|.+.+.+.+
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-------e~~~~l~~~~----~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-------EELERLARKP----NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-------HHHHHHHhcc----ceEEEecccCCCHHHHHHHHHHhh
Confidence 1111111125899999999998875 3334444433 689999999999999999999876
No 387
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=5.9e-14 Score=116.64 Aligned_cols=120 Identities=22% Similarity=0.231 Sum_probs=101.4
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
.+.++|+++|-.++||||++..|.-+... +..||.+ +.++++++. +.++.+||..|+++.+.+ |+.|+.+..+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVtyk--N~kfNvwdvGGqd~iRpl--WrhYy~gtqg 87 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYK--NVKFNVWDVGGQDKIRPL--WRHYYTGTQG 87 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEee--eeEEeeeeccCchhhhHH--HHhhccCCce
Confidence 34689999999999999999999877643 3334444 788888875 578889999999999999 9999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
+|+|+|+.++...++++..+..+.....-. +.|++|.+||.|++...
T Consensus 88 lIFV~Dsa~~dr~eeAr~ELh~ii~~~em~--~~~~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 88 LIFVVDSADRDRIEEARNELHRIINDREMR--DAIILILANKQDLPDAM 134 (180)
T ss_pred EEEEEeccchhhHHHHHHHHHHHhCCHhhh--cceEEEEecCccccccc
Confidence 999999999999999998887777654433 89999999999998743
No 388
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.55 E-value=5.3e-14 Score=133.70 Aligned_cols=152 Identities=16% Similarity=0.217 Sum_probs=108.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeecccccCC-ceeEEEEeCCCCccchhhh-------HhhhccCC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYPD-RVPITIIDTPSSVEDRGKL-------GEELRRAD 88 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~-------~~~~~~ad 88 (573)
.|.+||-||+|||||+|+|...+. +..|+-|+-...+. .+.++ ...+.+-|.||+.+...+- -.+++.|+
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG-~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG-TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc-eeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 478999999999999999998663 33344311111122 22233 3349999999987654432 26789999
Q ss_pred EEEEEEeCCCc---ccHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecC
Q 008219 89 AVVLTYACDRP---ETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (573)
Q Consensus 89 ~il~v~D~~~~---~s~~~~~~~~~~~l~~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (573)
..+||+|++.. .-++.+.. +..+++.+. .+.|.++|+||+|+.+. ....+..+...+.+. .++++||
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~ea-----e~~~l~~L~~~lq~~-~V~pvsA 349 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEA-----EKNLLSSLAKRLQNP-HVVPVSA 349 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhH-----HHHHHHHHHHHcCCC-cEEEeee
Confidence 99999999998 67777764 666776654 47899999999998643 122346677777653 5899999
Q ss_pred CCCCCchhHHHHHHH
Q 008219 163 LKQIQVPEVFYYAQK 177 (573)
Q Consensus 163 ~~~~gi~~l~~~i~~ 177 (573)
++++|+.++++.+-.
T Consensus 350 ~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 350 KSGEGLEELLNGLRE 364 (366)
T ss_pred ccccchHHHHHHHhh
Confidence 999999999986643
No 389
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.55 E-value=3.6e-14 Score=129.85 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=81.2
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcC-CCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
.|+|+|.+|||||||+++|.+..+.....+..+.......+... +....+.+|||+|++.+..+ +...+..+|++++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~--~~~~~~~~d~il~ 79 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNM--RARGASLTDIAIL 79 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHH--HHHHHhhcCEEEE
Confidence 48999999999999999999988765543333333333334332 13567889999999888877 6677899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
|+|+++...-+.. ..+..+... ++|+++|+||+|+..
T Consensus 80 v~d~~~~~~~~~~-~~~~~~~~~------~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 80 VVAADDGVMPQTI-EAIKLAKAA------NVPFIVALNKIDKPN 116 (168)
T ss_pred EEECCCCccHHHH-HHHHHHHHc------CCCEEEEEEceeccc
Confidence 9999985321111 112222222 799999999999874
No 390
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.54 E-value=8e-14 Score=124.33 Aligned_cols=135 Identities=22% Similarity=0.339 Sum_probs=95.5
Q ss_pred EEcCCCCChhHHHHHhhCCCC-CCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEEEe
Q 008219 433 VFGPKKAGKSVLLNSFLGRPF-SDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHD 511 (573)
Q Consensus 433 vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D 511 (573)
|+|++|+|||||++++.+... .....++. .+..............+.+||++|...+... ....++.+|++++|+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~~~~i~v~d 77 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSL--RRLYYRGADGIILVYD 77 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhH--HHHHhcCCCEEEEEEE
Confidence 589999999999999999876 44444444 5555555555445678899999998877776 5677899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhh--HHHHHHHcCCccC
Q 008219 512 SSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQD--STRVFTFLVMVLY 572 (573)
Q Consensus 512 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~ 572 (573)
++++.++.....|........... ++|+++|+||+|+......... ........+.++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (157)
T cd00882 78 VTDRESFENVKEWLLLILINKEGE--NIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYF 138 (157)
T ss_pred CcCHHHHHHHHHHHHHHHHhhccC--CCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEE
Confidence 999999988888732222221112 8999999999999764432222 3334444445443
No 391
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.54 E-value=7.4e-14 Score=129.31 Aligned_cols=131 Identities=17% Similarity=0.097 Sum_probs=82.1
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCCh----------hHHHhhh
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE----------EAVAKLL 494 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~----------~~~~~~~ 494 (573)
+...++|+|+|.+|||||||+|+|++..+.....++.++...+.....+ ..+.+|||+|. +.+..+
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~- 90 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEKEKWQKL- 90 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHHHHHHHH-
Confidence 3566799999999999999999999986433333333333333333333 25889999993 234333
Q ss_pred ccccccc---cccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc---chhhHHHHHHHc
Q 008219 495 SNKDSLA---ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM---AIQDSTRVFTFL 567 (573)
Q Consensus 495 ~~~~~~~---~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~ 567 (573)
...+++ .++++++|+|++++.+..... .+..+... ++|+++|+||+|+..... ..++.++.++..
T Consensus 91 -~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~~------~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~ 161 (179)
T TIGR03598 91 -IEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRER------GIPVLIVLTKADKLKKSELNKQLKKIKKALKKD 161 (179)
T ss_pred -HHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence 223443 468999999998864443332 22333222 799999999999975322 234444444443
No 392
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=8.5e-14 Score=130.52 Aligned_cols=166 Identities=20% Similarity=0.182 Sum_probs=117.0
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCCeeecccccCCceeEEEEeCCCCcc-------chhhh
Q 008219 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN---VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE-------DRGKL 80 (573)
Q Consensus 11 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~ 80 (573)
.....+++|.++|.+|||||||||+|..+...+. ..++..+++... ...+..+.||||||.++ +....
T Consensus 34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~--~~~~~~l~lwDtPG~gdg~~~D~~~r~~~ 111 (296)
T COG3596 34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRL--SYDGENLVLWDTPGLGDGKDKDAEHRQLY 111 (296)
T ss_pred hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHh--hccccceEEecCCCcccchhhhHHHHHHH
Confidence 3456789999999999999999999996553222 223222233222 23346799999999876 34456
Q ss_pred HhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-------------cccHHHHHHHH
Q 008219 81 GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-------------QVSLEQVMMPI 147 (573)
Q Consensus 81 ~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~-------------~~~~~~~~~~~ 147 (573)
..++...|+++++.++.++.--.+.+ ++..+...+.+.|+++|+|.+|.....+ ....++....+
T Consensus 112 ~d~l~~~DLvL~l~~~~draL~~d~~--f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRALGTDED--FLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred HHHhhhccEEEEeccCCCccccCCHH--HHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 67899999999999988875433333 5555555555799999999999765420 11223333444
Q ss_pred HHHhcccCeEEEecCCCCCCchhHHHHHHHHHh
Q 008219 148 MQQFREIETCIECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 148 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
...+..+.|++.+|...+.|++++...++..+.
T Consensus 190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 455555668999999999999999999998764
No 393
>PRK00007 elongation factor G; Reviewed
Probab=99.54 E-value=5.6e-14 Score=155.92 Aligned_cols=232 Identities=15% Similarity=0.072 Sum_probs=140.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCC----CC------------CCCCCee--ecccccCCceeEEEEeCCCCccc
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPAN----VP------------PVLPPTR--LPEDFYPDRVPITIIDTPSSVED 76 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~----~~------------~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~ 76 (573)
+-.+|+|+|++|+|||||+++|+...-... .. ...+.+. ....+.+.+..++++||||+.++
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 345899999999999999999974221100 00 0000111 22334467889999999999888
Q ss_pred hhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc--
Q 008219 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI-- 154 (573)
Q Consensus 77 ~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-- 154 (573)
.......++.+|++|+|+|++.....+.. ..+..+... ++|+|+++||+|+... ........+...++..
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~--~~~~~~~~~--~~p~iv~vNK~D~~~~----~~~~~~~~i~~~l~~~~~ 160 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQSE--TVWRQADKY--KVPRIAFVNKMDRTGA----DFYRVVEQIKDRLGANPV 160 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchhhH--HHHHHHHHc--CCCEEEEEECCCCCCC----CHHHHHHHHHHHhCCCee
Confidence 77778889999999999998766444332 355556655 7899999999998865 2444556666666652
Q ss_pred CeEEEecCCCC-CCchhHHHHHHHHHh-CCCCCCc-----c-hhhhhchhhHHHHHHHHHHhccCCCC-----CccCchh
Q 008219 155 ETCIECSALKQ-IQVPEVFYYAQKAVL-HPTGPLF-----D-QESQALKPRCVRALKRIFILCDHDRD-----GALSDAE 221 (573)
Q Consensus 155 ~~~~~~Sa~~~-~gi~~l~~~i~~~~~-~~~~~~~-----~-~~~~~~~~~~~~~l~~i~~~~~~~~~-----~~l~~~e 221 (573)
...+++||..+ .|+.+++........ ....... . ...........++++.+....+...+ ..++.++
T Consensus 161 ~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~ 240 (693)
T PRK00007 161 PIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEE 240 (693)
T ss_pred eEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHH
Confidence 25688999887 466666542221110 0000000 0 00011111222233333333222222 2344455
Q ss_pred hhHHhhh----------hcCCCCChhHHHHHHHHHhhhccCCc
Q 008219 222 LNDFQVK----------CFNSPLQPSEIVGVKRVVQEKLREGV 254 (573)
Q Consensus 222 l~~~q~~----------~~~~~l~~~~i~~l~~~i~~~~~~~~ 254 (573)
+...-++ +++.++...+++.|++.+.+++|+..
T Consensus 241 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~ 283 (693)
T PRK00007 241 IKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPL 283 (693)
T ss_pred HHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChh
Confidence 4444332 46778888899999999999998654
No 394
>PRK00089 era GTPase Era; Reviewed
Probab=99.54 E-value=6e-14 Score=140.52 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=92.3
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHH--------Hhhhcccccc
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV--------AKLLSNKDSL 500 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~--------~~~~~~~~~~ 500 (573)
-.|+|+|++|||||||+|+|++.+...++..+.+++..+..+... +...+.++||+|.... ... ....+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~--~~~~~ 82 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKA--AWSSL 82 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHH--HHHHH
Confidence 469999999999999999999999887777777777776665554 4468889999995321 112 33467
Q ss_pred ccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-ccchhhHHHHHHHcC
Q 008219 501 AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLV 568 (573)
Q Consensus 501 ~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~ 568 (573)
..+|++++|+|+++. +.....++....... +.|+++|+||+|+... .......+.+++..+
T Consensus 83 ~~~D~il~vvd~~~~--~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~ 144 (292)
T PRK00089 83 KDVDLVLFVVDADEK--IGPGDEFILEKLKKV-----KTPVILVLNKIDLVKDKEELLPLLEELSELMD 144 (292)
T ss_pred hcCCEEEEEEeCCCC--CChhHHHHHHHHhhc-----CCCEEEEEECCcCCCCHHHHHHHHHHHHhhCC
Confidence 899999999999984 333444443333322 7899999999999843 333445555555443
No 395
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.53 E-value=5.8e-14 Score=116.83 Aligned_cols=161 Identities=16% Similarity=0.222 Sum_probs=120.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
.++.+||.++|-.|+|||||+..|.+.......| +.+...+.+.+ .+++.+++||.+|+...+..+..|+.+.|++|+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hltp-T~GFn~k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTP-TNGFNTKKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhccc-cCCcceEEEee-cCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 3678999999999999999999998766544333 34444444444 346899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHH-HHhc-ccCeEEEecCCCCCCch
Q 008219 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIM-QQFR-EIETCIECSALKQIQVP 169 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~Sa~~~~gi~ 169 (573)
|+|.++...|+++...+.+.+.... ..+|+.+..||.|+... ...++....+. ..+. ..-.+-+|||.++.|+.
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta---a~~eeia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA---AKVEEIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh---cchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 9999999999988877776665432 47999999999998765 22222211110 0000 01157889999999999
Q ss_pred hHHHHHHHH
Q 008219 170 EVFYYAQKA 178 (573)
Q Consensus 170 ~l~~~i~~~ 178 (573)
+-.+++++.
T Consensus 169 dg~~wv~sn 177 (185)
T KOG0074|consen 169 DGSDWVQSN 177 (185)
T ss_pred CcchhhhcC
Confidence 999988764
No 396
>PRK12736 elongation factor Tu; Reviewed
Probab=99.53 E-value=1.3e-13 Score=143.25 Aligned_cols=163 Identities=18% Similarity=0.203 Sum_probs=104.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCC-----------CC-C--CCCCCee--ecccccCCceeEEEEeCCCCccc
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPA-----------NV-P--PVLPPTR--LPEDFYPDRVPITIIDTPSSVED 76 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~-----------~~-~--~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~ 76 (573)
.++.++|+++|+.++|||||+++|++..... +. + ...+.|. ....+..++..+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 5678999999999999999999998632100 00 0 0011111 22334455678999999999888
Q ss_pred hhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccc-cHHHHHHHHHHHhcc-
Q 008219 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDENQQV-SLEQVMMPIMQQFRE- 153 (573)
Q Consensus 77 ~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~D~~~~~~~~-~~~~~~~~~~~~~~~- 153 (573)
.......+..+|++++|+|++....-.. ...+..+... ++| +|+|+||+|+....... ...+.+..+...++.
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 7766677889999999999876432222 2244555555 678 67899999987431111 112233333334432
Q ss_pred --cCeEEEecCCCCC--------CchhHHHHHHHHH
Q 008219 154 --IETCIECSALKQI--------QVPEVFYYAQKAV 179 (573)
Q Consensus 154 --~~~~~~~Sa~~~~--------gi~~l~~~i~~~~ 179 (573)
..+++++||++|. ++.++++.+.+.+
T Consensus 165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 1389999999983 4566666665543
No 397
>PRK12735 elongation factor Tu; Reviewed
Probab=99.52 E-value=1.5e-13 Score=142.74 Aligned_cols=152 Identities=17% Similarity=0.155 Sum_probs=96.6
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCC-------CCC--CCCC-----CCCCee--ecccccCCceeEEEEeCCCCcc
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADT-------FPA--NVPP-----VLPPTR--LPEDFYPDRVPITIIDTPSSVE 75 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~-------~~~--~~~~-----~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~ 75 (573)
..++.++|+++|++++|||||+++|++.. +.. .... ..+.|. ....+..++..+.|+||||+.+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 34678999999999999999999998621 000 0000 011111 1222345567899999999987
Q ss_pred chhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCcc-cccHHHHHHHHHHHhcc
Q 008219 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVI-VVGCKLDLRDENQ-QVSLEQVMMPIMQQFRE 153 (573)
Q Consensus 76 ~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~pii-lv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~ 153 (573)
+.......+..+|++++|+|++........ ..+..+... ++|.+ +|+||+|+..... .....+.+..+...++.
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~--e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 777667778899999999998874322221 244455544 67865 6799999974311 11122233344444432
Q ss_pred ---cCeEEEecCCCCCC
Q 008219 154 ---IETCIECSALKQIQ 167 (573)
Q Consensus 154 ---~~~~~~~Sa~~~~g 167 (573)
..+++++||.+|.|
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 164 PGDDTPIIRGSALKALE 180 (396)
T ss_pred CcCceeEEecchhcccc
Confidence 13799999999964
No 398
>PRK04213 GTP-binding protein; Provisional
Probab=99.52 E-value=3.4e-14 Score=134.21 Aligned_cols=127 Identities=15% Similarity=0.068 Sum_probs=81.3
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCC-----------hhHHHhhhc
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP-----------EEAVAKLLS 495 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G-----------~~~~~~~~~ 495 (573)
..++|+++|.+|||||||+|+|.+..+.....+ +.+. ....+... .+.+|||+| ++.+...
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~-~~t~-~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~-- 79 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP-GVTR-KPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE-- 79 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC-ceee-CceEEeec----ceEEEeCCccccccccCHHHHHHHHHH--
Confidence 347999999999999999999999876543333 2222 22233322 578999999 5666665
Q ss_pred ccccc----ccccEEEEEEeCCChhhHH---------HHHH-HHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHH
Q 008219 496 NKDSL----AACDIAVFVHDSSDESSWK---------RATE-LLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDST 561 (573)
Q Consensus 496 ~~~~~----~~~d~vilv~D~~~~~s~~---------~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 561 (573)
...++ ..++++++|+|+++...+. ..+. .+..+... ++|+++|+||+|+.... .+...
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~p~iiv~NK~Dl~~~~--~~~~~ 151 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL------GIPPIVAVNKMDKIKNR--DEVLD 151 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc------CCCeEEEEECccccCcH--HHHHH
Confidence 43444 3467888899886532110 0111 12222221 79999999999996533 34566
Q ss_pred HHHHHcCC
Q 008219 562 RVFTFLVM 569 (573)
Q Consensus 562 ~~~~~~~~ 569 (573)
++++.+++
T Consensus 152 ~~~~~~~~ 159 (201)
T PRK04213 152 EIAERLGL 159 (201)
T ss_pred HHHHHhcC
Confidence 67777775
No 399
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.52 E-value=1.8e-13 Score=127.99 Aligned_cols=93 Identities=24% Similarity=0.169 Sum_probs=61.1
Q ss_pred chhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHH-----HH
Q 008219 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIM-----QQ 150 (573)
Q Consensus 76 ~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~-----~~ 150 (573)
+...+..+++++|++++|+|+++.... |...+.....++|+++|+||+|+.... ..... ...+. ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~--~~~~~-~~~~~~~~~~~~ 94 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKD--KNLVR-IKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCC--CCHHH-HHHHHHHHHHhh
Confidence 466777899999999999999876421 222222222478999999999987531 11111 11121 11
Q ss_pred hcc-cCeEEEecCCCCCCchhHHHHHHH
Q 008219 151 FRE-IETCIECSALKQIQVPEVFYYAQK 177 (573)
Q Consensus 151 ~~~-~~~~~~~Sa~~~~gi~~l~~~i~~ 177 (573)
.+. ..+++++||++|.|++++++.+.+
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~ 122 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKK 122 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 111 126899999999999999987754
No 400
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.52 E-value=2.7e-13 Score=130.23 Aligned_cols=157 Identities=25% Similarity=0.304 Sum_probs=108.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCee--ecccccCCceeEEEEeCCCCccch----hh-----hH
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDR----GK-----LG 81 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~----~~-----~~ 81 (573)
.....|+|.|.||||||||++++++.+. +..||- +|. .-+.+..+..+++++||||.-+-. .. +.
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPF---TTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPF---TTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCc---cccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 3567899999999999999999998764 334664 222 345566777899999999975321 11 11
Q ss_pred hhhccCCEEEEEEeCCCcc--cHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEE
Q 008219 82 EELRRADAVVLTYACDRPE--TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIE 159 (573)
Q Consensus 82 ~~~~~ad~il~v~D~~~~~--s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (573)
+.-+-+++|+|++|.+... +.+.... ++..++... +.|+++|.||+|.... ...++....+...-+ .....
T Consensus 243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~f-~~p~v~V~nK~D~~~~---e~~~~~~~~~~~~~~--~~~~~ 315 (346)
T COG1084 243 ALRHLAGVILFLFDPSETCGYSLEEQIS-LLEEIKELF-KAPIVVVINKIDIADE---EKLEEIEASVLEEGG--EEPLK 315 (346)
T ss_pred HHHHhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHhc-CCCeEEEEecccccch---hHHHHHHHHHHhhcc--ccccc
Confidence 3344578999999998764 4555554 788887765 4999999999998865 122222222222222 24678
Q ss_pred ecCCCCCCchhHHHHHHHHHh
Q 008219 160 CSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 160 ~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
+|+..+.+++.+...+...+.
T Consensus 316 ~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 316 ISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred eeeeehhhHHHHHHHHHHHhh
Confidence 999999999988887776544
No 401
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.52 E-value=1.3e-13 Score=142.25 Aligned_cols=138 Identities=18% Similarity=0.052 Sum_probs=94.1
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhH----HHhh-hccccccccc
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----VAKL-LSNKDSLAAC 503 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~----~~~~-~~~~~~~~~~ 503 (573)
..|++||.||||||||+++|.+.+......+-.|.......+.+. +...+.+||++|... ...+ ......++++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 479999999999999999999877554333333444444444444 356788999999521 1111 0022345779
Q ss_pred cEEEEEEeCCCh---hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCcc
Q 008219 504 DIAVFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVL 571 (573)
Q Consensus 504 d~vilv~D~~~~---~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 571 (573)
+++++|+|+++. ++++....|..++..+.+... ++|++||+||+|+... .+..+++++.++.++
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~-~kP~IVV~NK~DL~~~---~e~l~~l~~~l~~~i 304 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLL-ERPQIVVANKMDLPEA---EENLEEFKEKLGPKV 304 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhcc-CCcEEEEEeCCCCcCC---HHHHHHHHHHhCCcE
Confidence 999999999864 678888888888877643221 7999999999998532 344566666665443
No 402
>PRK11058 GTPase HflX; Provisional
Probab=99.51 E-value=7.3e-14 Score=145.17 Aligned_cols=121 Identities=17% Similarity=0.146 Sum_probs=84.6
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHH------Hhhhccccccc
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV------AKLLSNKDSLA 501 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~------~~~~~~~~~~~ 501 (573)
..+|+++|.+|||||||+|+|++.++.....+..|.+.....+.++ +...+.+|||+|.... ..+..+...++
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~-~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA-DVGETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeC-CCCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 3589999999999999999999987653333444444554556665 3336789999996221 11111334578
Q ss_pred cccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 502 ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 502 ~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
.||++++|+|++++.++..+..|..-+...... ++|+++|+||+|+..
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~---~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAH---EIPTLLVMNKIDMLD 323 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccC---CCCEEEEEEcccCCC
Confidence 999999999999998877765443333322211 799999999999964
No 403
>PRK12289 GTPase RsgA; Reviewed
Probab=99.51 E-value=2.5e-13 Score=137.11 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=59.2
Q ss_pred hhHhhhccCCEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeE
Q 008219 79 KLGEELRRADAVVLTYACDRPE-TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETC 157 (573)
Q Consensus 79 ~~~~~~~~ad~il~v~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (573)
.....+.++|++++|+|+.++. ....+. .|+..+... ++|+++|+||+|+.... .... .......++ . ++
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~Ld-R~L~~a~~~--~ip~ILVlNK~DLv~~~---~~~~-~~~~~~~~g-~-~v 152 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLS-RFLVKAEST--GLEIVLCLNKADLVSPT---EQQQ-WQDRLQQWG-Y-QP 152 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHH-HHHHHHHHC--CCCEEEEEEchhcCChH---HHHH-HHHHHHhcC-C-eE
Confidence 3445689999999999998775 343444 366555443 89999999999997541 1111 111122333 2 78
Q ss_pred EEecCCCCCCchhHHHH
Q 008219 158 IECSALKQIQVPEVFYY 174 (573)
Q Consensus 158 ~~~Sa~~~~gi~~l~~~ 174 (573)
+.+||+++.|+++|++.
T Consensus 153 ~~iSA~tg~GI~eL~~~ 169 (352)
T PRK12289 153 LFISVETGIGLEALLEQ 169 (352)
T ss_pred EEEEcCCCCCHHHHhhh
Confidence 99999999999887764
No 404
>PRK09866 hypothetical protein; Provisional
Probab=99.51 E-value=2.3e-12 Score=134.85 Aligned_cols=175 Identities=17% Similarity=0.137 Sum_probs=106.0
Q ss_pred eeEEEEeCCCCccc-----hhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 008219 63 VPITIIDTPSSVED-----RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ 137 (573)
Q Consensus 63 ~~~~i~Dt~G~~~~-----~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~ 137 (573)
..+.|+||||.... .......+..+|+|+||+|++...+..+. .+.+.+++.+.+.|+++|+||+|+.+.. .
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dre-e 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRN-S 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCcc-c
Confidence 45779999998652 22344679999999999998876555543 3677777764346999999999986531 1
Q ss_pred ccHHHHHHHHHHH----hcccCeEEEecCCCCCCchhHHHHHHHHHhCCCCCCcchhhhhchhhHHHHHHHHHHhccCCC
Q 008219 138 VSLEQVMMPIMQQ----FREIETCIECSALKQIQVPEVFYYAQKAVLHPTGPLFDQESQALKPRCVRALKRIFILCDHDR 213 (573)
Q Consensus 138 ~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 213 (573)
...+.....+... ......+|+|||++|.|++++++.+...-.-| ..... .-.+.+...+-...-..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~l~-----~~~~~----~wv~dfa~~~~gr~w~e 377 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNGKLP-----PPEQQ----RWVEDFAHAALGRRWRH 377 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCCCCC-----chhhh----HHHHHHHHHHhcccccc
Confidence 1122222222212 11234799999999999999999887732111 11111 11111211111111111
Q ss_pred CCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhh
Q 008219 214 DGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEK 249 (573)
Q Consensus 214 ~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~ 249 (573)
+..-.-+.++......|..++-..-++.+.+++...
T Consensus 378 ~d~~d~e~l~~~A~~lwedS~~~~~i~~~i~~~~~~ 413 (741)
T PRK09866 378 ADLADLEHIRHAADQLWEDSLFAQPIQALLHAAYAN 413 (741)
T ss_pred ccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHh
Confidence 111125667777788888888888787777776665
No 405
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.51 E-value=5.1e-13 Score=120.73 Aligned_cols=89 Identities=16% Similarity=0.089 Sum_probs=59.4
Q ss_pred hhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEE
Q 008219 79 KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCI 158 (573)
Q Consensus 79 ~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (573)
.....++++|++++|+|++++...... .+...+... ++|+++|+||+|+... . ... ....+....+ .+++
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~~--~~p~iiv~NK~Dl~~~-~--~~~-~~~~~~~~~~--~~~~ 74 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLEL--GKKLLIVLNKADLVPK-E--VLE-KWKSIKESEG--IPVV 74 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHhC--CCcEEEEEEhHHhCCH-H--HHH-HHHHHHHhCC--CcEE
Confidence 455677889999999999876543332 244444333 6899999999998643 1 111 1111222222 2789
Q ss_pred EecCCCCCCchhHHHHHHH
Q 008219 159 ECSALKQIQVPEVFYYAQK 177 (573)
Q Consensus 159 ~~Sa~~~~gi~~l~~~i~~ 177 (573)
.+||+++.|++++++.+.+
T Consensus 75 ~iSa~~~~gi~~L~~~l~~ 93 (156)
T cd01859 75 YVSAKERLGTKILRRTIKE 93 (156)
T ss_pred EEEccccccHHHHHHHHHH
Confidence 9999999999999887755
No 406
>PRK13351 elongation factor G; Reviewed
Probab=99.51 E-value=1.1e-13 Score=154.05 Aligned_cols=132 Identities=19% Similarity=0.165 Sum_probs=94.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----CC-C----------CCee--ecccccCCceeEEEEeCCCCcc
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVP-----PV-L----------PPTR--LPEDFYPDRVPITIIDTPSSVE 75 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-----~~-~----------~~~~--~~~~~~~~~~~~~i~Dt~G~~~ 75 (573)
.+..+|+|+|+.|+|||||+++|+...-..... +. . +.+. ....+.+.++.+++|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 345789999999999999999998643111100 00 0 0000 1223446788999999999998
Q ss_pred chhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc
Q 008219 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE 153 (573)
Q Consensus 76 ~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 153 (573)
+......+++.+|++++|+|+++........ .+..+... ++|+++|+||+|+... .....++.+...++.
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~--~~~~~~~~--~~p~iiviNK~D~~~~----~~~~~~~~i~~~l~~ 155 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTET--VWRQADRY--GIPRLIFINKMDRVGA----DLFKVLEDIEERFGK 155 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHhc--CCCEEEEEECCCCCCC----CHHHHHHHHHHHHCC
Confidence 8888899999999999999999876665443 34445544 7999999999998864 345556666666665
No 407
>CHL00071 tufA elongation factor Tu
Probab=99.51 E-value=3.3e-13 Score=140.87 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=100.0
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCC------CCC--------CCCCee--ecccccCCceeEEEEeCCCCcc
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN------VPP--------VLPPTR--LPEDFYPDRVPITIIDTPSSVE 75 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~------~~~--------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~ 75 (573)
..++.++|+++|++++|||||+++|++..-... +.. ..+.|. ....+..++..+.++||||+.+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 356789999999999999999999997421100 000 011111 1123345677899999999888
Q ss_pred chhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcc-cccHHHHHHHHHHHhcc
Q 008219 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDENQ-QVSLEQVMMPIMQQFRE 153 (573)
Q Consensus 76 ~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~ 153 (573)
+.......+..+|++++|+|++.... ......+..+... ++| +|+|+||+|+..... .....+.+......++.
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~--~qt~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPM--PQTKEHILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCc--HHHHHHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 87777788899999999999876432 2222355555555 678 778999999976411 11112233334444332
Q ss_pred ---cCeEEEecCCCCCCc
Q 008219 154 ---IETCIECSALKQIQV 168 (573)
Q Consensus 154 ---~~~~~~~Sa~~~~gi 168 (573)
..+++++||.+|.|+
T Consensus 164 ~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 164 PGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCcceEEEcchhhcccc
Confidence 138999999999764
No 408
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.50 E-value=8.6e-14 Score=148.35 Aligned_cols=131 Identities=12% Similarity=0.067 Sum_probs=90.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-----CC-e----------------eecccccCCceeEEEEeCCC
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVL-----PP-T----------------RLPEDFYPDRVPITIIDTPS 72 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-----~~-~----------------~~~~~~~~~~~~~~i~Dt~G 72 (573)
+.-+|+|+|++|+|||||+++|+...-.....+.. +. + .....+.++++.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 45589999999999999999997422111111100 00 0 01123457789999999999
Q ss_pred CccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhc
Q 008219 73 SVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR 152 (573)
Q Consensus 73 ~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 152 (573)
+.++......+++.+|++|+|+|+++.... ....++...+.. ++|+++++||+|+... ...+.+..+...++
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~--~t~~l~~~~~~~--~iPiiv~iNK~D~~~a----~~~~~l~~i~~~l~ 160 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP--QTRKLMEVCRLR--DTPIFTFINKLDRDGR----EPLELLDEIEEVLG 160 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCH--HHHHHHHHHHhc--CCCEEEEEECCccccc----CHHHHHHHHHHHhC
Confidence 998888788889999999999999875422 222355555554 8999999999998764 12334455556565
Q ss_pred c
Q 008219 153 E 153 (573)
Q Consensus 153 ~ 153 (573)
.
T Consensus 161 ~ 161 (526)
T PRK00741 161 I 161 (526)
T ss_pred C
Confidence 3
No 409
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=3.4e-14 Score=124.69 Aligned_cols=121 Identities=17% Similarity=0.251 Sum_probs=107.5
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+|++++|+.|.|||+++++++.++|...+.++.+.....-....+.+..++..|||+|+|.+..+ ...++-.+.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~ggl--rdgyyI~~qcA 86 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGL--RDGYYIQGQCA 86 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccc--ccccEEeccee
Confidence 4689999999999999999999999999999999998766555555556689999999999999888 77788889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
+++||++.+.++.++..|..++...+. ++|+|++|||.|....
T Consensus 87 iimFdVtsr~t~~n~~rwhrd~~rv~~----NiPiv~cGNKvDi~~r 129 (216)
T KOG0096|consen 87 IIMFDVTSRFTYKNVPRWHRDLVRVRE----NIPIVLCGNKVDIKAR 129 (216)
T ss_pred EEEeeeeehhhhhcchHHHHHHHHHhc----CCCeeeeccceecccc
Confidence 999999999999999999999988776 8999999999997653
No 410
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.50 E-value=2.4e-15 Score=131.22 Aligned_cols=166 Identities=16% Similarity=0.196 Sum_probs=128.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCC-ceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPD-RVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
.-+|+.|+|+-||||||++.+.+...|...+..+.+... ....++.+ -+++++||..|++++..+..-+++++++..
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 458999999999999999999998888777665444433 22333332 367899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhc-----CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCC
Q 008219 92 LTYACDRPETLDELSTFWLPELRRL-----EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~-----~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (573)
+|||+++..+|+.... |.+.+... +...|+++..||||..... ............++.+ +..++++|+|.+.
T Consensus 104 iVfdvt~s~tfe~~sk-wkqdldsk~qLpng~Pv~~vllankCd~e~~a-~~~~~~~~d~f~keng-f~gwtets~Kenk 180 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSK-WKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA-KNEATRQFDNFKKENG-FEGWTETSAKENK 180 (229)
T ss_pred EEEEccccccccHHHH-HHHhccCcccCCCCCcchheeccchhccChHh-hhhhHHHHHHHHhccC-ccceeeecccccc
Confidence 9999999999999985 99888552 3468899999999987651 1111223334444444 3489999999999
Q ss_pred CchhHHHHHHHHHhCCC
Q 008219 167 QVPEVFYYAQKAVLHPT 183 (573)
Q Consensus 167 gi~~l~~~i~~~~~~~~ 183 (573)
|++|.-..+++.++-..
T Consensus 181 ni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVND 197 (229)
T ss_pred ChhHHHHHHHHHHHhhc
Confidence 99999999998876544
No 411
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.50 E-value=8.4e-14 Score=117.74 Aligned_cols=141 Identities=13% Similarity=0.194 Sum_probs=120.2
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
.-.+||.++|++.+|||||+-.++++.+.+.+..+.+..+.-+++.+.+....+-|||..|++++..+ .+...+++-+
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~--lPiac~dsva 95 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINM--LPIACKDSVA 95 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhcc--CceeecCcEE
Confidence 34589999999999999999999999998888888899898899999877889999999999999988 7788899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCc----ccc--cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD----SFA--MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~----~~~--~~~~~~~~~~~~~~~~~~ 572 (573)
++++||.+.+.++..+..|+.+....... -+| |+||+|.|+- .+- ....+++.+|+-++.+.|
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~Nkt---AiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~ 164 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKT---AIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLF 164 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCc---cce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEE
Confidence 99999999999999999999998876642 344 5689999962 211 236788899999887654
No 412
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.50 E-value=5e-14 Score=148.23 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=84.0
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEE-EEEEcCCCeEEEEEEecCChhHHHhh------hccccc
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAV-NVVDQPGGTKKTVVLREIPEEAVAKL------LSNKDS 499 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~dt~G~~~~~~~------~~~~~~ 499 (573)
..++|+++|.+|||||||+|+|++.+...+...+++++... ..+.++ +..+.+|||+|.+.+... .+...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD--GIPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC--CeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 34799999999999999999999988655554555554443 344444 357889999997543221 113346
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 500 LAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 500 ~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
++.+|++++|+|++++.+++....|.. .. +.|+++|+||+|+..
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~----~~-----~~piiiV~NK~DL~~ 335 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE----LK-----DKPVIVVLNKADLTG 335 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh----cC-----CCCcEEEEEhhhccc
Confidence 789999999999999888775544433 11 799999999999965
No 413
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.50 E-value=8.5e-13 Score=131.74 Aligned_cols=80 Identities=26% Similarity=0.345 Sum_probs=54.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeccc----------------------cc-CCceeEEEEeCCCCc
Q 008219 19 IVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPED----------------------FY-PDRVPITIIDTPSSV 74 (573)
Q Consensus 19 I~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~~~~~----------------------~~-~~~~~~~i~Dt~G~~ 74 (573)
|+|+|.||||||||+|+|++... +.++|.+.-....... .+ ...+.+++|||||+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 58999999999999999998764 2334442211111000 11 134789999999983
Q ss_pred ----cchhhhH---hhhccCCEEEEEEeCCC
Q 008219 75 ----EDRGKLG---EELRRADAVVLTYACDR 98 (573)
Q Consensus 75 ----~~~~~~~---~~~~~ad~il~v~D~~~ 98 (573)
.+..+.. ..++.||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 3333333 35999999999999973
No 414
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.50 E-value=2.5e-13 Score=116.17 Aligned_cols=105 Identities=26% Similarity=0.395 Sum_probs=71.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeecccccCCceeEEEEeCCCCccchh---------hhHhhhcc
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG---------KLGEELRR 86 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~~~~ 86 (573)
||+|+|.+|||||||+|+|++... ....+++.... ....+...+..+.++||||...... .....+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~-~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP-VYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE-EEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeee-eeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 699999999999999999998543 22233322222 2233334667788999999864311 12244589
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 008219 87 ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCK 128 (573)
Q Consensus 87 ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK 128 (573)
+|++++|+|++++.. .....+++.++ .++|+++|.||
T Consensus 80 ~d~ii~vv~~~~~~~--~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPIT--EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSH--HHHHHHHHHHH---TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCC--HHHHHHHHHHh---cCCCEEEEEcC
Confidence 999999999777322 22223666665 38999999998
No 415
>PRK12739 elongation factor G; Reviewed
Probab=99.49 E-value=3.6e-13 Score=149.58 Aligned_cols=232 Identities=14% Similarity=0.088 Sum_probs=136.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCC----CC-C-----------CCCCee--ecccccCCceeEEEEeCCCCcc
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPAN----VP-P-----------VLPPTR--LPEDFYPDRVPITIIDTPSSVE 75 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~----~~-~-----------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~ 75 (573)
.+-.+|+|+|++++|||||+++|+...-... .. + ..+.+. ....+.+++..+.++||||+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 3456799999999999999999975321100 00 0 000111 1233446788999999999988
Q ss_pred chhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc-
Q 008219 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI- 154 (573)
Q Consensus 76 ~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~- 154 (573)
+......+++.+|++|+|+|++....... ...+..+... ++|+|+++||+|+... ........+...++..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt--~~i~~~~~~~--~~p~iv~iNK~D~~~~----~~~~~~~~i~~~l~~~~ 157 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQS--ETVWRQADKY--GVPRIVFVNKMDRIGA----DFFRSVEQIKDRLGANA 157 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCCC----CHHHHHHHHHHHhCCCc
Confidence 88888899999999999999887643332 2355556555 7899999999999865 2344555565655531
Q ss_pred -CeEEEecCCCCC-CchhHHHHHHHHHhCCC--CC------CcchhhhhchhhHHHHHHHHHHhccCCCCCc-----cCc
Q 008219 155 -ETCIECSALKQI-QVPEVFYYAQKAVLHPT--GP------LFDQESQALKPRCVRALKRIFILCDHDRDGA-----LSD 219 (573)
Q Consensus 155 -~~~~~~Sa~~~~-gi~~l~~~i~~~~~~~~--~~------~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~-----l~~ 219 (573)
...+++|+..+. |+-++...... .+... .. ...............+++.+....+...+.+ +..
T Consensus 158 ~~~~iPis~~~~f~g~vd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~ 236 (691)
T PRK12739 158 VPIQLPIGAEDDFKGVIDLIKMKAI-IWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITE 236 (691)
T ss_pred eeEEecccccccceEEEEcchhhhh-hccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCH
Confidence 246788888764 23333321111 11110 00 0000001111222233333333333222223 333
Q ss_pred hhhhHHhhh----------hcCCCCChhHHHHHHHHHhhhccCCc
Q 008219 220 AELNDFQVK----------CFNSPLQPSEIVGVKRVVQEKLREGV 254 (573)
Q Consensus 220 ~el~~~q~~----------~~~~~l~~~~i~~l~~~i~~~~~~~~ 254 (573)
+++.....+ +++.++...+++.+++.|.+++|+..
T Consensus 237 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~ 281 (691)
T PRK12739 237 EEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPL 281 (691)
T ss_pred HHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChh
Confidence 444333332 46778888899999999999998754
No 416
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.49 E-value=3.2e-13 Score=123.89 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=78.7
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEE-EEEcCCCeEEEEEEecCChhH----------HHhhhcc
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVN-VVDQPGGTKKTVVLREIPEEA----------VAKLLSN 496 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~dt~G~~~----------~~~~~~~ 496 (573)
+++|+++|.+|+|||||+++|++.........+.+++.... .+... ...+.+|||+|... +... +.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~-~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVL-RT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHH-HH
Confidence 47899999999999999999999875444434444433332 23333 35678999999532 2111 12
Q ss_pred ccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 497 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 497 ~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
...+..+|++++|+|++++.+..... ++..+... +.|+++|+||+|+...
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~------~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLR-IAGLILEE------GKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHhc------CCCEEEEEeccccCCc
Confidence 23567999999999999987654432 23333222 7899999999999764
No 417
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.49 E-value=1.6e-13 Score=126.55 Aligned_cols=119 Identities=24% Similarity=0.215 Sum_probs=79.7
Q ss_pred EEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHh----hh-ccccccccccEEE
Q 008219 433 VFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK----LL-SNKDSLAACDIAV 507 (573)
Q Consensus 433 vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~----~~-~~~~~~~~~d~vi 507 (573)
++|++|||||||+|+|.+.+......+..+.......+... +...+.+|||+|...... +. .....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 58999999999999999987521211222222222333333 256788999999632111 10 0123467899999
Q ss_pred EEEeCCCh------hhHHHHHHHHHHHHhcCCC------CCCCCcEEEEEeCCCCcccc
Q 008219 508 FVHDSSDE------SSWKRATELLVEVASYGED------TGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 508 lv~D~~~~------~s~~~~~~~~~~~~~~~~~------~~~~~p~ilv~nK~Dl~~~~ 554 (573)
+|+|+++. .++.....|...+...... . +.|+++|+||+|+....
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~NK~Dl~~~~ 136 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLT--AKPVIYVLNKIDLDDAE 136 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHh--hCCeEEEEEchhcCchh
Confidence 99999988 5788888887777654321 1 79999999999997643
No 418
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.49 E-value=2.5e-13 Score=139.51 Aligned_cols=135 Identities=16% Similarity=0.082 Sum_probs=93.1
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEE-EEcCCCeEEEEEEecCChhH-------HHhhhcccccc
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNV-VDQPGGTKKTVVLREIPEEA-------VAKLLSNKDSL 500 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~dt~G~~~-------~~~~~~~~~~~ 500 (573)
..|++||.||||||||+|+|.+.+. .++..+.||+..+.. +... +...+.++||+|... .... ....+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~--~l~~i 235 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIR--FLKHL 235 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHH--HHHHH
Confidence 3799999999999999999998774 445455555544443 3443 456789999999532 1111 12357
Q ss_pred ccccEEEEEEeCC---ChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcC
Q 008219 501 AACDIAVFVHDSS---DESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 568 (573)
Q Consensus 501 ~~~d~vilv~D~~---~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 568 (573)
+++|++++|+|++ +..+++....|+.++..+..... +.|+++|+||+|+.......+..+++.+.++
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~-~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~ 305 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLA-EKPRWLVFNKIDLLDEEEAEERAKAIVEALG 305 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhc-CCCEEEEEeCCccCChHHHHHHHHHHHHHhC
Confidence 8999999999998 45567777888877776532111 6899999999999754333344455555543
No 419
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.49 E-value=3.2e-13 Score=122.92 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=85.5
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhh------ccccccc
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL------SNKDSLA 501 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~------~~~~~~~ 501 (573)
..+|+++|.+|+|||||+|++.+.+.......+.+++......... +...+.+|||+|........ .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999987654444444444444433333 45678899999953221110 0334578
Q ss_pred cccEEEEEEeCCChhhHHHHHHHH-HHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHc
Q 008219 502 ACDIAVFVHDSSDESSWKRATELL-VEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFL 567 (573)
Q Consensus 502 ~~d~vilv~D~~~~~s~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~ 567 (573)
.+|++++|+|++++ +.....++ ..+... +.|+++|+||+|+.... ...+....++...
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 141 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEFILELLKKS------KTPVILVLNKIDLVKDKEDLLPLLEKLKELG 141 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHHHHHHHHHh------CCCEEEEEEchhccccHHHHHHHHHHHHhcc
Confidence 99999999999987 33334443 333332 68999999999997432 2233344444433
No 420
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.48 E-value=3e-13 Score=141.21 Aligned_cols=143 Identities=20% Similarity=0.110 Sum_probs=89.6
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChh----HHHhh-hcccccccc
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEE----AVAKL-LSNKDSLAA 502 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~----~~~~~-~~~~~~~~~ 502 (573)
..+|++||.||||||||+|+|.+.+......+-.|.......+... ...+.+||++|.- ....+ .....++++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~--~~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAG--DTRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEEC--CeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 4589999999999999999999876554333333434444445544 3578999999941 11111 002235688
Q ss_pred ccEEEEEEeCCCh----hhHHHHHHHHHHHHhcCCC--------CCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCc
Q 008219 503 CDIAVFVHDSSDE----SSWKRATELLVEVASYGED--------TGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMV 570 (573)
Q Consensus 503 ~d~vilv~D~~~~----~s~~~~~~~~~~~~~~~~~--------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 570 (573)
||++++|+|+++. ..++.+..+..++..+... ...++|+|||+||+|+...+...+...+..++.+++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~ 316 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWP 316 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCe
Confidence 9999999999852 3566666666666554320 011799999999999975432222222223334554
Q ss_pred cC
Q 008219 571 LY 572 (573)
Q Consensus 571 ~~ 572 (573)
+|
T Consensus 317 Vf 318 (500)
T PRK12296 317 VF 318 (500)
T ss_pred EE
Confidence 43
No 421
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.48 E-value=1.7e-13 Score=124.02 Aligned_cols=116 Identities=17% Similarity=0.298 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccc-cCCceeEEEEeCCCCccchhhhHh---hhccCCEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDF-YPDRVPITIIDTPSSVEDRGKLGE---ELRRADAVVL 92 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~---~~~~ad~il~ 92 (573)
-.|+|+|++|+|||+|+.+|..+........... .....+ ...+..+.++|+||+.+....... +...+.+|||
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~--n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN--NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SSE--EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC--CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 3689999999999999999999876655554321 222222 234567999999999988765444 4889999999
Q ss_pred EEeCCC-cccHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCC
Q 008219 93 TYACDR-PETLDELSTFWLPELRRL---EVKVPVIVVGCKLDLRDE 134 (573)
Q Consensus 93 v~D~~~-~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~D~~~~ 134 (573)
|+|.+. +..+..+.++++..+... ...+|+++++||.|+...
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 999874 456777777777777542 358999999999998875
No 422
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.48 E-value=4.9e-13 Score=139.07 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=96.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCC-------C----CCC------CCCCCCCeeecccccCCceeEEEEeCCCCcc
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADT-------F----PAN------VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~-------~----~~~------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 75 (573)
.++.++|+++|+.++|||||+++|++.. + ..+ ..++.-. .....+..++..+.||||||+++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~-~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN-TAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee-eEEEEEcCCCEEEEEEECCchHH
Confidence 4678999999999999999999998431 0 000 1111100 12233445677899999999988
Q ss_pred chhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCcc-cccHHHHHHHHHHHhcc
Q 008219 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVI-VVGCKLDLRDENQ-QVSLEQVMMPIMQQFRE 153 (573)
Q Consensus 76 ~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~pii-lv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~ 153 (573)
|.......+..+|++++|+|++.....+.. ..+..+... ++|.+ +|+||+|+..... .....+.+..+...++.
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 876666677889999999998874332222 244445544 67755 6899999875411 11112233444444432
Q ss_pred ---cCeEEEecCCCCC
Q 008219 154 ---IETCIECSALKQI 166 (573)
Q Consensus 154 ---~~~~~~~Sa~~~~ 166 (573)
..+++++||.+|.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 164 PGDDTPIIRGSALKAL 179 (394)
T ss_pred CccCccEEECcccccc
Confidence 1389999999885
No 423
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.47 E-value=9.7e-16 Score=133.61 Aligned_cols=143 Identities=17% Similarity=0.247 Sum_probs=120.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCe-EEEEEEecCChhHHHhhhcccccccccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGT-KKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
.+.+|+.|+|.-+|||||++.+++...|+..|..+++.++..+...++... .+.++||.+|+++|..+ +..|++.++
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~m--trVyykea~ 100 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNM--TRVYYKEAH 100 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcce--EEEEecCCc
Confidence 456799999999999999999999999999999999999988877776332 26779999999999999 999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCCCCcEEEEEeCCCCcccccc--hhhHHHHHHHcCCc
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGE-DTGFEVPCLIVAAKDDLDSFAMA--IQDSTRVFTFLVMV 570 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~ 570 (573)
+.++|||+++..+|+....|..++..... +....+|+|+.+||||+.+.... .....++++++|+.
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~ 169 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFE 169 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCcc
Confidence 99999999999999999999999876432 12127889999999999875432 46777788888753
No 424
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.46 E-value=7e-13 Score=141.44 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=88.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC----------CC------------eeecccccCCceeEEEEeCC
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVL----------PP------------TRLPEDFYPDRVPITIIDTP 71 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~----------~~------------~~~~~~~~~~~~~~~i~Dt~ 71 (573)
.+..+|+|+|.+++|||||+++|+...-.....+.. .. ......+.++++.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 345689999999999999999986422111111100 00 00123355778999999999
Q ss_pred CCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHh
Q 008219 72 SSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF 151 (573)
Q Consensus 72 G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~ 151 (573)
|+.++......+++.+|++|+|+|+++. +......+++.++.. ++|+++++||+|+... ...+....+...+
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~~--~~PiivviNKiD~~~~----~~~~ll~~i~~~l 160 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRLR--DTPIFTFMNKLDRDIR----DPLELLDEVENEL 160 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHhc--CCCEEEEEECccccCC----CHHHHHHHHHHHh
Confidence 9988887778889999999999998874 333333456655554 7999999999998753 2333444444554
Q ss_pred c
Q 008219 152 R 152 (573)
Q Consensus 152 ~ 152 (573)
+
T Consensus 161 ~ 161 (527)
T TIGR00503 161 K 161 (527)
T ss_pred C
Confidence 4
No 425
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.46 E-value=5.8e-13 Score=138.74 Aligned_cols=151 Identities=23% Similarity=0.170 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCCC----------C---------Cee--ecccccCCce
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANV------------PPVL----------P---------PTR--LPEDFYPDRV 63 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~------------~~~~----------~---------~~~--~~~~~~~~~~ 63 (573)
++|+++|+.++|||||+++|+...-.... .+.. + .|. ....+.+++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999754321110 1110 0 000 1122335677
Q ss_pred eEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHH--
Q 008219 64 PITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLE-- 141 (573)
Q Consensus 64 ~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~-- 141 (573)
++.|+||||+++|.......+..+|++++|+|++....-+... .+..++... ..++++|+||+|+.... ....+
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~--~~~~~~~~~-~~~iivviNK~D~~~~~-~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR--HSYIASLLG-IRHVVLAVNKMDLVDYD-EEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH--HHHHHHHcC-CCcEEEEEEecccccch-HHHHHHH
Confidence 8999999999888777777899999999999987653222111 222333332 34689999999987531 11111
Q ss_pred -HHHHHHHHHhccc-CeEEEecCCCCCCchhH
Q 008219 142 -QVMMPIMQQFREI-ETCIECSALKQIQVPEV 171 (573)
Q Consensus 142 -~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l 171 (573)
+....+...++.. .+++++||++|.|+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 2222222333321 27999999999999863
No 426
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.46 E-value=1.5e-12 Score=115.41 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=41.2
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCCh
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE 487 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~ 487 (573)
+++++|.+|||||||+|++++......+..++.++.. ..+.+.+ .+.+|||+|-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHF-QTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccce-EEEEeCC---CEEEEECCCc
Confidence 5999999999999999999998876665555555443 4455542 4678999994
No 427
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.46 E-value=1.7e-13 Score=123.66 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=74.4
Q ss_pred EEEcCCCCChhHHHHHhhCCCCCCCC-CCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHh-----hh-cccccccccc
Q 008219 432 FVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK-----LL-SNKDSLAACD 504 (573)
Q Consensus 432 ~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~-----~~-~~~~~~~~~d 504 (573)
+++|.+|||||||+++|++....... .+..+.+......... ...+.+|||+|...+.. +. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 58999999999999999987533222 2222222333333333 36788999999765432 10 0334678899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
++++|+|+.++.+... .++....... +.|+++|+||+|+....
T Consensus 79 ~ii~v~d~~~~~~~~~--~~~~~~~~~~-----~~piiiv~nK~D~~~~~ 121 (157)
T cd01894 79 VILFVVDGREGLTPAD--EEIAKYLRKS-----KKPVILVVNKVDNIKEE 121 (157)
T ss_pred EEEEEEeccccCCccH--HHHHHHHHhc-----CCCEEEEEECcccCChH
Confidence 9999999987644433 2232322222 79999999999997643
No 428
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.46 E-value=6.2e-13 Score=124.04 Aligned_cols=112 Identities=16% Similarity=0.098 Sum_probs=80.0
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCC----------------cccEEEEEEEcCCCeEEEEEEecCChhHHHhh
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTT----------------DERYAVNVVDQPGGTKKTVVLREIPEEAVAKL 493 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~ 493 (573)
+|+|+|.+|+|||||+|+|++........... +.......+.. ....+.+|||+|...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHHH
Confidence 48999999999999999999887664432211 11111222222 3567889999999887776
Q ss_pred hccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 494 LSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 494 ~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
+..+++.+|++++|+|++++.+.... .++..+... +.|+++|+||+|+..
T Consensus 79 --~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~------~~~i~iv~nK~D~~~ 128 (189)
T cd00881 79 --VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIAREG------GLPIIVAINKIDRVG 128 (189)
T ss_pred --HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHHC------CCCeEEEEECCCCcc
Confidence 67788999999999999987544322 333333331 899999999999975
No 429
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.46 E-value=5.3e-13 Score=141.19 Aligned_cols=156 Identities=20% Similarity=0.129 Sum_probs=98.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCCC----------C---------Cee--eccccc
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANV------------PPVL----------P---------PTR--LPEDFY 59 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~------------~~~~----------~---------~~~--~~~~~~ 59 (573)
.+..++|+++|+.++|||||+++|+...-.... .+.. + .|. ....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 467899999999999999999999865421110 1111 0 000 111233
Q ss_pred CCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccccc
Q 008219 60 PDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVS 139 (573)
Q Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~ 139 (573)
.++..+.|+||||++.+.......+..+|++++|+|++....-.... ....+...+ ..|+|+|+||+|+... ....
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~--~~~l~~~lg-~~~iIvvvNKiD~~~~-~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR--HSFIATLLG-IKHLVVAVNKMDLVDY-SEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH--HHHHHHHhC-CCceEEEEEeeccccc-hhHH
Confidence 56778999999998888766666789999999999987653221111 112222222 2579999999998753 1111
Q ss_pred HHHHHH---HHHHHhc--ccCeEEEecCCCCCCchhHH
Q 008219 140 LEQVMM---PIMQQFR--EIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 140 ~~~~~~---~~~~~~~--~~~~~~~~Sa~~~~gi~~l~ 172 (573)
..+... .+...++ ...+++++||++|.|+.++-
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 222222 2222332 12379999999999998753
No 430
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.45 E-value=1.7e-12 Score=122.06 Aligned_cols=160 Identities=18% Similarity=0.127 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchh---hh--------Hhh
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRG---KL--------GEE 83 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~---~~--------~~~ 83 (573)
++|+++|.+|||||||+|++++...........+.|+ ........+..+.++||||..+... .. ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998764332211111222 1222334678899999999875421 11 123
Q ss_pred hccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCC---CCcEEEEEeCCCCCCCccccc----HHHHHHHHHHHhcccCe
Q 008219 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLEV---KVPVIVVGCKLDLRDENQQVS----LEQVMMPIMQQFREIET 156 (573)
Q Consensus 84 ~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~ 156 (573)
..++|++|+|+++.+ .+- .+...++.++.... -.++++|.|++|......... ....+..+.+.++. .
T Consensus 81 ~~g~~~illVi~~~~-~t~--~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~--r 155 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTE--EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG--R 155 (196)
T ss_pred CCCCEEEEEEEECCC-cCH--HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC--e
Confidence 467899999999876 332 22335666655321 368999999999765411000 11334445555443 3
Q ss_pred EEEec-----CCCCCCchhHHHHHHHHHhC
Q 008219 157 CIECS-----ALKQIQVPEVFYYAQKAVLH 181 (573)
Q Consensus 157 ~~~~S-----a~~~~gi~~l~~~i~~~~~~ 181 (573)
++..+ +..+.++.+|++.+.+.+..
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 43333 45677888888877776554
No 431
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.45 E-value=3.5e-13 Score=121.86 Aligned_cols=116 Identities=18% Similarity=0.224 Sum_probs=78.8
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCCh-----hHHHhhhcccccccccc
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE-----EAVAKLLSNKDSLAACD 504 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~-----~~~~~~~~~~~~~~~~d 504 (573)
+|+++|.+|||||||+|++.+.... ...+++ +.+... .+|||+|. +.+..+ ...++++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~---~~~~~~ad 66 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHAL---ITTLQDVD 66 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceE-------EEECCC----CcccCCccccCCHHHHHHH---HHHHhcCC
Confidence 6999999999999999998875421 111222 222212 16999996 333332 23468999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCC--ccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM--VLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~ 572 (573)
++++|+|+++..++ ...|+..+. . +.|+++++||+|+... ..+...++++++++ ++|
T Consensus 67 ~il~v~d~~~~~s~--~~~~~~~~~---~----~~~ii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~p~~ 125 (158)
T PRK15467 67 MLIYVHGANDPESR--LPAGLLDIG---V----SKRQIAVISKTDMPDA--DVAATRKLLLETGFEEPIF 125 (158)
T ss_pred EEEEEEeCCCcccc--cCHHHHhcc---C----CCCeEEEEEccccCcc--cHHHHHHHHHHcCCCCCEE
Confidence 99999999988766 334554431 1 6899999999998652 34556677777775 554
No 432
>PRK00049 elongation factor Tu; Reviewed
Probab=99.45 E-value=1.1e-12 Score=136.36 Aligned_cols=151 Identities=18% Similarity=0.193 Sum_probs=96.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCC---CC---CC-----C---CCCCee--ecccccCCceeEEEEeCCCCccc
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFP---AN---VP-----P---VLPPTR--LPEDFYPDRVPITIIDTPSSVED 76 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~---~~---~~-----~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~ 76 (573)
.+..++|+++|+.++|||||+++|++.... .. +. . ..+.|. ....+..++..+.++||||+.++
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 467899999999999999999999873110 00 00 0 011111 12233456678999999999887
Q ss_pred hhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCcccc-cHHHHHHHHHHHhcc-
Q 008219 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVI-VVGCKLDLRDENQQV-SLEQVMMPIMQQFRE- 153 (573)
Q Consensus 77 ~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~pii-lv~NK~D~~~~~~~~-~~~~~~~~~~~~~~~- 153 (573)
.......+..+|++++|+|++....- ....++..+... ++|++ +++||+|+....... .....+..+...++.
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~--qt~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMP--QTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCch--HHHHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 77777788999999999998765332 222355566655 68976 689999997531111 112223333333321
Q ss_pred --cCeEEEecCCCCCC
Q 008219 154 --IETCIECSALKQIQ 167 (573)
Q Consensus 154 --~~~~~~~Sa~~~~g 167 (573)
..+++++||.+|.+
T Consensus 165 ~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 165 GDDTPIIRGSALKALE 180 (396)
T ss_pred ccCCcEEEeecccccC
Confidence 13799999999763
No 433
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.45 E-value=1.3e-12 Score=126.14 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=108.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhh-------hHhhhccCCEE
Q 008219 19 IVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGK-------LGEELRRADAV 90 (573)
Q Consensus 19 I~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~ad~i 90 (573)
|.+||-||+|||||++++...+. ..+||-|+-...+.+.-......+.+-|.||..+-.+. .-.+++++-++
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL 241 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVL 241 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhee
Confidence 67899999999999999998664 44466432222222222245667999999998754432 23678999999
Q ss_pred EEEEeCCCccc---HHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCC
Q 008219 91 VLTYACDRPET---LDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (573)
Q Consensus 91 l~v~D~~~~~s---~~~~~~~~~~~l~~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (573)
+.|+|++..+. .++... +..+|..+. .++|.+||+||+|+.... ...+.....+.+..+....++ +||.+
T Consensus 242 ~hviD~s~~~~~dp~~~~~~-i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~--e~~~~~~~~l~~~~~~~~~~~-ISa~t 317 (369)
T COG0536 242 LHVIDLSPIDGRDPIEDYQT-IRNELEKYSPKLAEKPRIVVLNKIDLPLDE--EELEELKKALAEALGWEVFYL-ISALT 317 (369)
T ss_pred EEEEecCcccCCCHHHHHHH-HHHHHHHhhHHhccCceEEEEeccCCCcCH--HHHHHHHHHHHHhcCCCccee-eehhc
Confidence 99999987654 555553 677777765 489999999999966541 122222333444444332333 99999
Q ss_pred CCCchhHHHHHHHHHh
Q 008219 165 QIQVPEVFYYAQKAVL 180 (573)
Q Consensus 165 ~~gi~~l~~~i~~~~~ 180 (573)
+.|++++...+.+.+.
T Consensus 318 ~~g~~~L~~~~~~~l~ 333 (369)
T COG0536 318 REGLDELLRALAELLE 333 (369)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999998877543
No 434
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.44 E-value=4.4e-13 Score=125.60 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=72.2
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCC----CCCCC---CCCCcccEEEEEEEcC------------CCeEEEEEEecCChhH
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRP----FSDNY---TPTTDERYAVNVVDQP------------GGTKKTVVLREIPEEA 489 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~----~~~~~---~~~~~~~~~~~~~~~~------------~~~~~~~i~dt~G~~~ 489 (573)
++|+++|++|||||||+++|++.. +.... .+..+.......+.+. +....+.+|||+|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 479999999999999999999731 11111 1111212211222221 2356888999999866
Q ss_pred HHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 490 VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 490 ~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
+... .......+|++++|+|+++.......+.+. +.... ++|+++|+||+|+..
T Consensus 81 ~~~~--~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~-----~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 81 LIRT--IIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL-----CKKLIVVLNKIDLIP 134 (192)
T ss_pred HHHH--HHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc-----CCCEEEEEECcccCC
Confidence 5332 223456789999999999864443333322 11111 689999999999974
No 435
>PRK12288 GTPase RsgA; Reviewed
Probab=99.44 E-value=1.8e-12 Score=130.98 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=61.0
Q ss_pred hccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 84 ~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
..++|.+++|++++...++..++. |+..+... ++|+++|+||+|+..........+. ......++ .+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr-~L~~a~~~--~i~~VIVlNK~DL~~~~~~~~~~~~-~~~y~~~g--~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDR-YLVACETL--GIEPLIVLNKIDLLDDEGRAFVNEQ-LDIYRNIG--YRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHH-HHHHHHhc--CCCEEEEEECccCCCcHHHHHHHHH-HHHHHhCC--CeEEEEeCC
Confidence 467999999999988889988885 76655543 7999999999999764110111111 11122333 289999999
Q ss_pred CCCCchhHHHHH
Q 008219 164 KQIQVPEVFYYA 175 (573)
Q Consensus 164 ~~~gi~~l~~~i 175 (573)
++.|+++|++.+
T Consensus 192 tg~GideL~~~L 203 (347)
T PRK12288 192 TGEGLEELEAAL 203 (347)
T ss_pred CCcCHHHHHHHH
Confidence 999999988754
No 436
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.1e-13 Score=136.97 Aligned_cols=125 Identities=19% Similarity=0.108 Sum_probs=92.9
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhH-------HHhhhcccccc
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA-------VAKLLSNKDSL 500 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~-------~~~~~~~~~~~ 500 (573)
.++|+|+|+||||||||+|+|..+++.++++.++|||+.+.....- .+.++.+.||+|..+ ...+.+.+..+
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV-NGVPVRLSDTAGIREESNDGIEALGIERARKRI 346 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeec-CCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence 4799999999999999999999999999999999999999865554 567888999999644 12233355677
Q ss_pred ccccEEEEEEeC--CChhhHHHHHHHHHHHHhcCC---CCCCCCcEEEEEeCCCCccc
Q 008219 501 AACDIAVFVHDS--SDESSWKRATELLVEVASYGE---DTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 501 ~~~d~vilv~D~--~~~~s~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~Dl~~~ 553 (573)
+.||++++|+|+ ++-++-..+...+........ ......|++++.||+|+..+
T Consensus 347 ~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 347 ERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred hhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 899999999999 444444444444444322110 00015789999999999765
No 437
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.44 E-value=2.1e-12 Score=127.71 Aligned_cols=88 Identities=19% Similarity=0.132 Sum_probs=59.0
Q ss_pred hhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeE
Q 008219 78 GKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETC 157 (573)
Q Consensus 78 ~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (573)
......+..+|++++|+|+..+.+..+.. +.+.+ .++|+++|.||+|+... .........+ ...+ .++
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~~~--i~~~l----~~kp~IiVlNK~DL~~~---~~~~~~~~~~-~~~~--~~v 80 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRNPM--IDEIR----GNKPRLIVLNKADLADP---AVTKQWLKYF-EEKG--IKA 80 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCChh--HHHHH----CCCCEEEEEEccccCCH---HHHHHHHHHH-HHcC--CeE
Confidence 34567899999999999998775544321 33333 26899999999998643 1111111112 1222 268
Q ss_pred EEecCCCCCCchhHHHHHHH
Q 008219 158 IECSALKQIQVPEVFYYAQK 177 (573)
Q Consensus 158 ~~~Sa~~~~gi~~l~~~i~~ 177 (573)
+.+||+++.|++++.+.+.+
T Consensus 81 i~iSa~~~~gi~~L~~~i~~ 100 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKK 100 (276)
T ss_pred EEEECCCcccHHHHHHHHHH
Confidence 99999999999998887655
No 438
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.43 E-value=1.2e-12 Score=123.20 Aligned_cols=117 Identities=21% Similarity=0.127 Sum_probs=75.8
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCCh----------hHHHhhh
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE----------EAVAKLL 494 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~----------~~~~~~~ 494 (573)
.+..++|+++|.+|||||||+++|++..+.....++.+....+..... ...+.+|||+|. +.+..+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~- 96 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL- 96 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH-
Confidence 445689999999999999999999997643333333333333333322 256889999993 344444
Q ss_pred ccccccc---cccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 495 SNKDSLA---ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 495 ~~~~~~~---~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
...+++ .++++++|+|++++.+. ...++....... ++|+++++||+|+.+.
T Consensus 97 -~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~i~~~l~~~-----~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 97 -IEEYLRTRENLKGVVLLIDSRHPLKE--LDLQMIEWLKEY-----GIPVLIVLTKADKLKK 150 (196)
T ss_pred -HHHHHHhCccceEEEEEEecCCCCCH--HHHHHHHHHHHc-----CCcEEEEEECcccCCH
Confidence 333444 44788899998876333 322222222222 7899999999999754
No 439
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.43 E-value=1.7e-12 Score=130.13 Aligned_cols=160 Identities=19% Similarity=0.212 Sum_probs=88.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCCCCCeeecccccCC-ceeEEEEeCCCCccchhhhH-----hhh
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPA---NVPPVLPPTRLPEDFYPD-RVPITIIDTPSSVEDRGKLG-----EEL 84 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~-----~~~ 84 (573)
..+++|+|+|.+|+|||||||+|.|-.... ...|+..+|..+..+... .-.+.+||.||......... ..+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 357899999999999999999998743221 133444444433344432 33599999999764333222 347
Q ss_pred ccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC--CC----cccccHHHHHHHHH----HHhcc-
Q 008219 85 RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLR--DE----NQQVSLEQVMMPIM----QQFRE- 153 (573)
Q Consensus 85 ~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~--~~----~~~~~~~~~~~~~~----~~~~~- 153 (573)
...|.+|++.+ .+-+..++ .+.+.+++. ++|+++|.+|+|.. .. .+....++.+..+. +.+..
T Consensus 113 ~~yD~fiii~s--~rf~~ndv--~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 113 YRYDFFIIISS--ERFTENDV--QLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GG-SEEEEEES--SS--HHHH--HHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccCEEEEEeC--CCCchhhH--HHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 78999999988 44444444 488888887 89999999999951 11 11222233333322 22222
Q ss_pred ---cCeEEEecCCC--CCCchhHHHHHHHHH
Q 008219 154 ---IETCIECSALK--QIQVPEVFYYAQKAV 179 (573)
Q Consensus 154 ---~~~~~~~Sa~~--~~gi~~l~~~i~~~~ 179 (573)
..++|-+|+.+ ..++..|.+.+.+.+
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL 217 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDL 217 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence 12789999985 345777777777654
No 440
>PLN03127 Elongation factor Tu; Provisional
Probab=99.43 E-value=2.7e-12 Score=134.48 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=99.6
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcC------CCCCC-----------CCCCCCCee--ecccccCCceeEEEEeCCC
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAAD------TFPAN-----------VPPVLPPTR--LPEDFYPDRVPITIIDTPS 72 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~------~~~~~-----------~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G 72 (573)
..++.++|+++|+.++|||||+++|.+. ..... ..+ .|. ....+..++.++.++||||
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rG---iTi~~~~~~~~~~~~~i~~iDtPG 133 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARG---ITIATAHVEYETAKRHYAHVDCPG 133 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcC---ceeeeeEEEEcCCCeEEEEEECCC
Confidence 4567899999999999999999999732 10000 112 111 2233445677899999999
Q ss_pred CccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcc-cccHHHHHHHHHHH
Q 008219 73 SVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDENQ-QVSLEQVMMPIMQQ 150 (573)
Q Consensus 73 ~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~D~~~~~~-~~~~~~~~~~~~~~ 150 (573)
+.++.......+..+|++++|+|++....-+ ....+..+... ++| +|+|+||+|+..... .....+.+..+...
T Consensus 134 h~~f~~~~~~g~~~aD~allVVda~~g~~~q--t~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~ 209 (447)
T PLN03127 134 HADYVKNMITGAAQMDGGILVVSAPDGPMPQ--TKEHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSF 209 (447)
T ss_pred ccchHHHHHHHHhhCCEEEEEEECCCCCchh--HHHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 9888776666778899999999987653322 22345555555 688 578999999975311 01111122222222
Q ss_pred hcc---cCeEEEecCC---CCCC-------chhHHHHHHH
Q 008219 151 FRE---IETCIECSAL---KQIQ-------VPEVFYYAQK 177 (573)
Q Consensus 151 ~~~---~~~~~~~Sa~---~~~g-------i~~l~~~i~~ 177 (573)
++. ..+++++||. +|.| +.+|++.+.+
T Consensus 210 ~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~ 249 (447)
T PLN03127 210 YKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDE 249 (447)
T ss_pred hCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHH
Confidence 221 2378888886 4444 4555555544
No 441
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.43 E-value=1.2e-12 Score=144.32 Aligned_cols=155 Identities=20% Similarity=0.134 Sum_probs=98.3
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCC------------CCCCC-C------------------Cee--ecccc
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN------------VPPVL-P------------------PTR--LPEDF 58 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~------------~~~~~-~------------------~~~--~~~~~ 58 (573)
..+..++|+|+|++++|||||+++|+...-... ..++. + .|. ....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 445678999999999999999999997542211 11110 0 000 11223
Q ss_pred cCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccc
Q 008219 59 YPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQV 138 (573)
Q Consensus 59 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~ 138 (573)
..++.++.|+||||++++.......+..+|++++|+|++....-+... ....+...+ ..|+++|+||+|+..... .
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e--~~~~~~~~~-~~~iivvvNK~D~~~~~~-~ 175 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR--HSFIASLLG-IRHVVLAVNKMDLVDYDQ-E 175 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH--HHHHHHHhC-CCeEEEEEEecccccchh-H
Confidence 356678999999999887666667789999999999987653222111 222333332 367899999999875211 1
Q ss_pred cHHHH---HHHHHHHhccc-CeEEEecCCCCCCchh
Q 008219 139 SLEQV---MMPIMQQFREI-ETCIECSALKQIQVPE 170 (573)
Q Consensus 139 ~~~~~---~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 170 (573)
..++. +..+...++.. .+++++||++|.|+.+
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 11112 22222333321 2689999999999985
No 442
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.43 E-value=6.7e-13 Score=119.70 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=78.1
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcc-cEEEEEEEcCCCeEEEEEEecCChhHHHh------hhccccccc
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDE-RYAVNVVDQPGGTKKTVVLREIPEEAVAK------LLSNKDSLA 501 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~dt~G~~~~~~------~~~~~~~~~ 501 (573)
++|+++|++|+|||||++++.+.........+.++ ......+... ...+.+|||+|...+.. .......+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999988754333223333 2222233333 45788999999543211 001234567
Q ss_pred cccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 502 ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 502 ~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
++|++++|+|++++.+......+.. .. +.|+++|+||+|+...
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-----~~----~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-----PA----DKPIIVVLNKSDLLPD 122 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-----hc----CCCEEEEEEchhcCCc
Confidence 9999999999998877666554433 11 7999999999998753
No 443
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.43 E-value=3.6e-12 Score=114.95 Aligned_cols=81 Identities=14% Similarity=0.041 Sum_probs=53.5
Q ss_pred CEEEEEEeCCCcccHHHHHHHHH-HHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCC
Q 008219 88 DAVVLTYACDRPETLDELSTFWL-PELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (573)
Q Consensus 88 d~il~v~D~~~~~s~~~~~~~~~-~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (573)
|++++|+|++++.+..... +. ..+.. .++|+++|+||+|+... ....+.+..+.... ..+++.+||++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~--i~~~~~~~--~~~p~IiVlNK~Dl~~~---~~~~~~~~~~~~~~--~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRSPD--IERVLIKE--KGKKLILVLNKADLVPK---EVLRKWLAYLRHSY--PTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccCHH--HHHHHHhc--CCCCEEEEEechhcCCH---HHHHHHHHHHHhhC--CceEEEEeccCCc
Confidence 7899999998876555322 22 23333 37999999999999654 11111111222222 2368999999999
Q ss_pred CchhHHHHHHH
Q 008219 167 QVPEVFYYAQK 177 (573)
Q Consensus 167 gi~~l~~~i~~ 177 (573)
|++++.+.+.+
T Consensus 72 gi~~L~~~i~~ 82 (155)
T cd01849 72 GIEKKESAFTK 82 (155)
T ss_pred ChhhHHHHHHH
Confidence 99999987765
No 444
>PLN03126 Elongation factor Tu; Provisional
Probab=99.42 E-value=2e-12 Score=136.15 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=99.8
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCC--CC----C-----CC---CCCCee--ecccccCCceeEEEEeCCCCcc
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFP--AN----V-----PP---VLPPTR--LPEDFYPDRVPITIIDTPSSVE 75 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~--~~----~-----~~---~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~ 75 (573)
..++.++|+++|++++|||||+++|+..... .. + .+ ..+.+. ....+..++..+.++||||+++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 3466899999999999999999999963211 00 0 00 000111 1222345677899999999998
Q ss_pred chhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcc-cccHHHHHHHHHHHhcc
Q 008219 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDENQ-QVSLEQVMMPIMQQFRE 153 (573)
Q Consensus 76 ~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~ 153 (573)
|.......+..+|++++|+|++....-+. ..++..+... ++| +|+++||+|+..... .....+.+..+...++.
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 88777788899999999999886543322 2355556555 678 788999999976311 11122233333344321
Q ss_pred ---cCeEEEecCCCCCCc
Q 008219 154 ---IETCIECSALKQIQV 168 (573)
Q Consensus 154 ---~~~~~~~Sa~~~~gi 168 (573)
..+++++||.+|.++
T Consensus 233 ~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 233 PGDDIPIISGSALLALEA 250 (478)
T ss_pred CcCcceEEEEEccccccc
Confidence 238999999998654
No 445
>PRK00098 GTPase RsgA; Reviewed
Probab=99.42 E-value=2.4e-12 Score=128.38 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=61.0
Q ss_pred hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEec
Q 008219 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (573)
Q Consensus 82 ~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (573)
..+.++|++++|+|++++.........|+..+... ++|+++|+||+|+... . .... ........++ .+++++|
T Consensus 76 ~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~-~-~~~~-~~~~~~~~~g--~~v~~vS 148 (298)
T PRK00098 76 LIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDD-L-EEAR-ELLALYRAIG--YDVLELS 148 (298)
T ss_pred ceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCC-H-HHHH-HHHHHHHHCC--CeEEEEe
Confidence 34689999999999998876666544577776654 7999999999999643 1 1111 1122223333 2799999
Q ss_pred CCCCCCchhHHHH
Q 008219 162 ALKQIQVPEVFYY 174 (573)
Q Consensus 162 a~~~~gi~~l~~~ 174 (573)
|+++.|++++++.
T Consensus 149 A~~g~gi~~L~~~ 161 (298)
T PRK00098 149 AKEGEGLDELKPL 161 (298)
T ss_pred CCCCccHHHHHhh
Confidence 9999999887753
No 446
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.41 E-value=2.2e-12 Score=139.87 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=92.0
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCC-------CCCCCC------CCcccEEEEE--EEc---CCCeEEEEEEecCChhH
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPF-------SDNYTP------TTDERYAVNV--VDQ---PGGTKKTVVLREIPEEA 489 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~-------~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~i~dt~G~~~ 489 (573)
.-+++++|..++|||||+++|+.... ...+.. ..+....... +.+ ++....+.+|||+|++.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 34899999999999999999987421 111111 1122222222 222 33456889999999999
Q ss_pred HHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCC
Q 008219 490 VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 569 (573)
Q Consensus 490 ~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 569 (573)
|... ...+++.||++++|+|++++.+++....|...+. . ++|+++|+||+|+.... .....+++++.+++
T Consensus 83 F~~~--v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~------~ipiIiViNKiDl~~~~-~~~~~~el~~~lg~ 152 (595)
T TIGR01393 83 FSYE--VSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-N------DLEIIPVINKIDLPSAD-PERVKKEIEEVIGL 152 (595)
T ss_pred HHHH--HHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-c------CCCEEEEEECcCCCccC-HHHHHHHHHHHhCC
Confidence 9887 7788999999999999999877776666654432 1 78999999999996432 12234556665665
Q ss_pred c
Q 008219 570 V 570 (573)
Q Consensus 570 ~ 570 (573)
.
T Consensus 153 ~ 153 (595)
T TIGR01393 153 D 153 (595)
T ss_pred C
Confidence 3
No 447
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.41 E-value=3.7e-12 Score=125.40 Aligned_cols=138 Identities=15% Similarity=0.169 Sum_probs=87.1
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCC--------CCCc--ccEEEEEEEcCCCeEEEEEEecCChh---------
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT--------PTTD--ERYAVNVVDQPGGTKKTVVLREIPEE--------- 488 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~~i~dt~G~~--------- 488 (573)
.++|+|+|.+|+|||||+|+|++..+..... ...+ .......+..++...++.+|||+|-.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 4799999999999999999999987765421 1222 22222334444444688999999921
Q ss_pred ---------HHHhhhc------cccccc--cccEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCC
Q 008219 489 ---------AVAKLLS------NKDSLA--ACDIAVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDL 550 (573)
Q Consensus 489 ---------~~~~~~~------~~~~~~--~~d~vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 550 (573)
.|...+. ....+. ++|+++++++.+.. .+...+ ..+..+.. ++|+++|+||+|+
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~-------~v~vi~VinK~D~ 155 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK-------RVNIIPVIAKADT 155 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc-------cCCEEEEEECCCc
Confidence 1111111 112333 57888888887752 232332 22333321 6899999999999
Q ss_pred cccc---cchhhHHHHHHHcCCccCC
Q 008219 551 DSFA---MAIQDSTRVFTFLVMVLYK 573 (573)
Q Consensus 551 ~~~~---~~~~~~~~~~~~~~~~~~k 573 (573)
.... .......+.++.+++++|+
T Consensus 156 l~~~e~~~~k~~i~~~l~~~~i~~~~ 181 (276)
T cd01850 156 LTPEELKEFKQRIMEDIEEHNIKIYK 181 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEC
Confidence 5532 3366778888888988774
No 448
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.41 E-value=1.2e-12 Score=124.17 Aligned_cols=131 Identities=15% Similarity=0.063 Sum_probs=81.2
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCC------------------------------CCCCcccEEEEEEEcCCCeEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNY------------------------------TPTTDERYAVNVVDQPGGTKKT 479 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 479 (573)
+|+|+|.+|+|||||+++|+........ ...+.+..... .....++..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~-~~~~~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAY-RYFSTPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecce-eEEecCCceE
Confidence 5899999999999999999864433221 00122222222 1222245678
Q ss_pred EEEecCChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCC-CcEEEEEeCCCCcccc----
Q 008219 480 VVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFE-VPCLIVAAKDDLDSFA---- 554 (573)
Q Consensus 480 ~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~-~p~ilv~nK~Dl~~~~---- 554 (573)
.+|||+|.+.|... ....++.+|++++|+|++++. .........+.... + .++|+|+||+|+....
T Consensus 80 ~liDTpG~~~~~~~--~~~~~~~ad~~llVvD~~~~~--~~~~~~~~~~~~~~-----~~~~iIvviNK~D~~~~~~~~~ 150 (208)
T cd04166 80 IIADTPGHEQYTRN--MVTGASTADLAILLVDARKGV--LEQTRRHSYILSLL-----GIRHVVVAVNKMDLVDYSEEVF 150 (208)
T ss_pred EEEECCcHHHHHHH--HHHhhhhCCEEEEEEECCCCc--cHhHHHHHHHHHHc-----CCCcEEEEEEchhcccCCHHHH
Confidence 89999999887654 445678999999999998762 22222222222222 3 4578899999986421
Q ss_pred -cchhhHHHHHHHcCCc
Q 008219 555 -MAIQDSTRVFTFLVMV 570 (573)
Q Consensus 555 -~~~~~~~~~~~~~~~~ 570 (573)
....+.+++++.++++
T Consensus 151 ~~i~~~~~~~~~~~~~~ 167 (208)
T cd04166 151 EEIVADYLAFAAKLGIE 167 (208)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 1134556666666643
No 449
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.41 E-value=3.5e-12 Score=137.47 Aligned_cols=117 Identities=17% Similarity=0.176 Sum_probs=85.2
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
.+..+|+++|.+|+|||||+++|.+.++.....+..|.......+.+. +...+.+|||+|++.|..+ +...+..+|+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~-~~~~i~~iDTPGhe~F~~~--r~rga~~aDi 161 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE-DGKMITFLDTPGHEAFTSM--RARGAKVTDI 161 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC-CCcEEEEEECCCCcchhhH--HHhhhccCCE
Confidence 345689999999999999999999987766554444444444445554 3337889999999999888 6777899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
+++|+|+++...-+..+. +..+... ++|+++++||+|+..
T Consensus 162 aILVVda~dgv~~qT~e~-i~~~~~~------~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEA-ISHAKAA------NVPIIVAINKIDKPE 201 (587)
T ss_pred EEEEEECCCCCCHhHHHH-HHHHHHc------CCCEEEEEECccccc
Confidence 999999987532222221 2222222 799999999999964
No 450
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.5e-12 Score=130.37 Aligned_cols=162 Identities=20% Similarity=0.228 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CCCC--CC---------CCCee--eccccc---CCceeEEEEeCCCCccchh
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFP--ANVP--PV---------LPPTR--LPEDFY---PDRVPITIIDTPSSVEDRG 78 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~--~~~~--~~---------~~~~~--~~~~~~---~~~~~~~i~Dt~G~~~~~~ 78 (573)
=+++||-+-.-|||||..+|+...-. .+.. .. -+-|. ....+. +..+.++++||||+.+|..
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 35999999999999999999864421 1100 00 00111 111111 3458999999999999999
Q ss_pred hhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc-CeE
Q 008219 79 KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI-ETC 157 (573)
Q Consensus 79 ~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 157 (573)
.....+..||++|+|+|+...-.-+.+.. ++..++. +..+|.|+||+|+...+ .+.....+.+-|... .++
T Consensus 141 EVsRslaac~G~lLvVDA~qGvqAQT~an-f~lAfe~---~L~iIpVlNKIDlp~ad----pe~V~~q~~~lF~~~~~~~ 212 (650)
T KOG0462|consen 141 EVSRSLAACDGALLVVDASQGVQAQTVAN-FYLAFEA---GLAIIPVLNKIDLPSAD----PERVENQLFELFDIPPAEV 212 (650)
T ss_pred eehehhhhcCceEEEEEcCcCchHHHHHH-HHHHHHc---CCeEEEeeeccCCCCCC----HHHHHHHHHHHhcCCccce
Confidence 99999999999999999887655555554 3333333 78999999999999862 333444455555432 279
Q ss_pred EEecCCCCCCchhHHHHHHHHHhCCCCCC
Q 008219 158 IECSALKQIQVPEVFYYAQKAVLHPTGPL 186 (573)
Q Consensus 158 ~~~Sa~~~~gi~~l~~~i~~~~~~~~~~~ 186 (573)
+.+|||+|.|++++++.+++.+..|....
T Consensus 213 i~vSAK~G~~v~~lL~AII~rVPpP~~~~ 241 (650)
T KOG0462|consen 213 IYVSAKTGLNVEELLEAIIRRVPPPKGIR 241 (650)
T ss_pred EEEEeccCccHHHHHHHHHhhCCCCCCCC
Confidence 99999999999999999999987776543
No 451
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.40 E-value=6.3e-12 Score=115.30 Aligned_cols=88 Identities=20% Similarity=0.127 Sum_probs=57.9
Q ss_pred hhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeE
Q 008219 78 GKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETC 157 (573)
Q Consensus 78 ~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (573)
......+.+||++++|+|++++....... +...+ .++|+++|+||+|+... .......+.+. ... ..+
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~--i~~~~----~~k~~ilVlNK~Dl~~~---~~~~~~~~~~~-~~~--~~v 78 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNPL--LEKIL----GNKPRIIVLNKADLADP---KKTKKWLKYFE-SKG--EKV 78 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCChh--hHhHh----cCCCEEEEEehhhcCCh---HHHHHHHHHHH-hcC--CeE
Confidence 44567899999999999998765432221 33322 25799999999998643 11111111111 111 268
Q ss_pred EEecCCCCCCchhHHHHHHH
Q 008219 158 IECSALKQIQVPEVFYYAQK 177 (573)
Q Consensus 158 ~~~Sa~~~~gi~~l~~~i~~ 177 (573)
+.+||+++.|++++.+.+..
T Consensus 79 i~iSa~~~~gi~~L~~~l~~ 98 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAAKK 98 (171)
T ss_pred EEEECCCcccHHHHHHHHHH
Confidence 99999999999998887755
No 452
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.40 E-value=4.1e-12 Score=126.24 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=58.0
Q ss_pred hhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEE
Q 008219 79 KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCI 158 (573)
Q Consensus 79 ~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (573)
.....+..+|++|+|+|+..+.+..... +.+.+ .++|+++|.||+|+... .........+ ...+ .+++
T Consensus 17 ~l~~~l~~aDvIL~VvDar~p~~~~~~~--l~~~~----~~kp~iiVlNK~DL~~~---~~~~~~~~~~-~~~~--~~vi 84 (287)
T PRK09563 17 EIKENLKLVDVVIEVLDARIPLSSENPM--IDKII----GNKPRLLILNKSDLADP---EVTKKWIEYF-EEQG--IKAL 84 (287)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCCCChh--HHHHh----CCCCEEEEEEchhcCCH---HHHHHHHHHH-HHcC--CeEE
Confidence 4557899999999999998775544321 33332 26899999999998643 1111111111 1212 2689
Q ss_pred EecCCCCCCchhHHHHHHH
Q 008219 159 ECSALKQIQVPEVFYYAQK 177 (573)
Q Consensus 159 ~~Sa~~~~gi~~l~~~i~~ 177 (573)
.+||+++.|++++.+.+..
T Consensus 85 ~vSa~~~~gi~~L~~~l~~ 103 (287)
T PRK09563 85 AINAKKGQGVKKILKAAKK 103 (287)
T ss_pred EEECCCcccHHHHHHHHHH
Confidence 9999999999998877655
No 453
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.40 E-value=1.8e-12 Score=143.81 Aligned_cols=134 Identities=13% Similarity=0.080 Sum_probs=91.5
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhc--------cccc
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLS--------NKDS 499 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~--------~~~~ 499 (573)
.++|+++|.||||||||+|+|.+.+.. +..-++++... +......+...+.++||+|...+..... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vgn~pGvTve~-k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-VGNWAGVTVER-KEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCceEee-EEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 368999999999999999999987653 33233333222 2222233556889999999765532100 1122
Q ss_pred c--ccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 500 L--AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 500 ~--~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
+ ..+|++++|+|+++.++- ..+..++.+. ++|+++|+||+|+.+++....+.++++++++++++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~------giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVv 146 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL------GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVI 146 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHHc------CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEE
Confidence 2 479999999999886432 2244444443 89999999999997655445667888899998765
No 454
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.40 E-value=1.8e-12 Score=124.81 Aligned_cols=115 Identities=16% Similarity=0.062 Sum_probs=78.7
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCC-----CC-----------CCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhh
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDN-----YT-----------PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL 493 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~ 493 (573)
+|+++|.+|+|||||+++|+....... .. ...+............+..++.+|||+|...|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 489999999999999999986421110 00 01111111222223334578899999999888776
Q ss_pred hccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 494 LSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 494 ~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
...+++.+|++++|+|+++.... ....++..+... ++|+++++||+|+...
T Consensus 81 --~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~------~~P~iivvNK~D~~~a 131 (237)
T cd04168 81 --VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL------NIPTIIFVNKIDRAGA 131 (237)
T ss_pred --HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc------CCCEEEEEECccccCC
Confidence 67788999999999999987443 233444444433 7999999999999753
No 455
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.39 E-value=1.3e-11 Score=126.99 Aligned_cols=81 Identities=23% Similarity=0.355 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeecc-----c-----------------cc-CCceeEEEEeCCC
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPA-NVPPVLPPTRLPE-----D-----------------FY-PDRVPITIIDTPS 72 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~~~~~-----~-----------------~~-~~~~~~~i~Dt~G 72 (573)
++|+|+|.||||||||+|+|++..... ++|.+.-...... . .. .....+++|||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876532 3543221111110 0 00 1236789999999
Q ss_pred Ccc----chhhhH---hhhccCCEEEEEEeCC
Q 008219 73 SVE----DRGKLG---EELRRADAVVLTYACD 97 (573)
Q Consensus 73 ~~~----~~~~~~---~~~~~ad~il~v~D~~ 97 (573)
... ...+.. ..++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 743 223333 3499999999999996
No 456
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.39 E-value=4e-12 Score=124.56 Aligned_cols=131 Identities=15% Similarity=0.035 Sum_probs=83.2
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCC---------CC-----------CcccEEEEEEEcCCCeEEEEEEecCChhH
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYT---------PT-----------TDERYAVNVVDQPGGTKKTVVLREIPEEA 489 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~---------~~-----------~~~~~~~~~~~~~~~~~~~~i~dt~G~~~ 489 (573)
+|+|+|.+|+|||||+++|+...-..... .. .+............+..++.+|||+|+..
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 69999999999999999998532111100 00 01112222233344567899999999988
Q ss_pred HHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCC
Q 008219 490 VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 569 (573)
Q Consensus 490 ~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 569 (573)
|... ....++.+|++++|+|+++...- ....++...... ++|+++++||+|+...... ....++.+.++.
T Consensus 84 f~~~--~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~~------~~P~iivvNK~D~~~a~~~-~~~~~l~~~l~~ 153 (267)
T cd04169 84 FSED--TYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRLR------GIPIITFINKLDREGRDPL-ELLDEIEEELGI 153 (267)
T ss_pred HHHH--HHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHhc------CCCEEEEEECCccCCCCHH-HHHHHHHHHHCC
Confidence 8765 55678999999999999886321 122333333222 7999999999998654321 123344445554
Q ss_pred c
Q 008219 570 V 570 (573)
Q Consensus 570 ~ 570 (573)
+
T Consensus 154 ~ 154 (267)
T cd04169 154 D 154 (267)
T ss_pred C
Confidence 3
No 457
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.38 E-value=1.7e-12 Score=122.67 Aligned_cols=123 Identities=20% Similarity=0.248 Sum_probs=94.2
Q ss_pred ccCCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCCh------hHHH---hh
Q 008219 423 QAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE------EAVA---KL 493 (573)
Q Consensus 423 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~------~~~~---~~ 493 (573)
....+.+.|+|||.||||||||.|.++|.+...++....||+..+-.+... +...+.++||+|. .... +.
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHh
Confidence 345667899999999999999999999999999999999999888877777 6678889999992 1111 11
Q ss_pred hc-cccccccccEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 494 LS-NKDSLAACDIAVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 494 ~~-~~~~~~~~d~vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
+. ....+..||++++|+|+++. -..+. ..+..+..+. .+|-++|.||+|....
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~t--r~~l~p~vl~~l~~ys-----~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASAT--RTPLHPRVLHMLEEYS-----KIPSILVMNKIDKLKQ 200 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCC--cCccChHHHHHHHHHh-----cCCceeeccchhcchh
Confidence 11 33466889999999999963 22232 3445555554 7999999999998654
No 458
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.38 E-value=4.2e-12 Score=133.27 Aligned_cols=154 Identities=18% Similarity=0.114 Sum_probs=99.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CC---------CCC----C-----ee--ecccccCC
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANV-----------PP---------VLP----P-----TR--LPEDFYPD 61 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-----------~~---------~~~----~-----~~--~~~~~~~~ 61 (573)
.++.++|+++|+.++|||||+.+|+...-.... .+ ..+ . |. ....+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 467899999999999999999999753211000 00 000 0 00 11223466
Q ss_pred ceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHH-------HHHHHHHHHHHhcCCCC-cEEEEEeCCCCCC
Q 008219 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLD-------ELSTFWLPELRRLEVKV-PVIVVGCKLDLRD 133 (573)
Q Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~-------~~~~~~~~~l~~~~~~~-piilv~NK~D~~~ 133 (573)
++.+.++||||+++|.......+..+|++|+|+|+++. .++ ...+ .+..++.. ++ ++|+|+||+|+..
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~e-h~~~~~~~--gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTRE-HALLAFTL--GVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHH-HHHHHHHc--CCCcEEEEEEcccCCc
Confidence 78999999999999998888999999999999999873 121 2222 23333333 66 4788999999862
Q ss_pred Cc-ccccH---HHHHHHHHHHhcc---cCeEEEecCCCCCCchh
Q 008219 134 EN-QQVSL---EQVMMPIMQQFRE---IETCIECSALKQIQVPE 170 (573)
Q Consensus 134 ~~-~~~~~---~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~ 170 (573)
.. ..... .+.+..+.+..+. ..+++++||.+|.|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 10 11112 2233344444442 13799999999999864
No 459
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.38 E-value=5.9e-12 Score=107.60 Aligned_cols=105 Identities=20% Similarity=0.349 Sum_probs=70.1
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEE-EEEEcCCCeEEEEEEecCChh----------HHHhhhcccc
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAV-NVVDQPGGTKKTVVLREIPEE----------AVAKLLSNKD 498 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~dt~G~~----------~~~~~~~~~~ 498 (573)
+|+|+|.+|||||||+|+|++.+....+..+.+++... ..+... ...+.++||+|-. .+.. ...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~~vDtpG~~~~~~~~~~~~~~~~---~~~ 75 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYN--NKKFILVDTPGINDGESQDNDGKEIRK---FLE 75 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEET--TEEEEEEESSSCSSSSHHHHHHHHHHH---HHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeec--eeeEEEEeCCCCcccchhhHHHHHHHH---HHH
Confidence 68999999999999999999976554554444444442 333343 4566799999931 1112 233
Q ss_pred ccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeC
Q 008219 499 SLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAK 547 (573)
Q Consensus 499 ~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 547 (573)
.+..+|++++|+|++++.. +.....+..+. . +.|+++|.||
T Consensus 76 ~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~--~-----~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNPIT-EDDKNILRELK--N-----KKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSHSH-HHHHHHHHHHH--T-----TSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCCCC-HHHHHHHHHHh--c-----CCCEEEEEcC
Confidence 4489999999999887421 22233334442 2 8999999998
No 460
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=7.4e-12 Score=113.16 Aligned_cols=131 Identities=16% Similarity=0.139 Sum_probs=86.9
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCC-CCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCC----------hhHHHhhh
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRP-FSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP----------EEAVAKLL 494 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G----------~~~~~~~~ 494 (573)
....-|+++|++|||||||||+|++.+ ...++..++.|+ .++.+.+.+ .+.++|.+| .+.+..+
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq-~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~- 96 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQ-LINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKL- 96 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccc-eeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHH-
Confidence 345689999999999999999999966 345554455544 445555552 267899999 2333333
Q ss_pred ccccccc---cccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCC
Q 008219 495 SNKDSLA---ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 569 (573)
Q Consensus 495 ~~~~~~~---~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 569 (573)
...|++ +-.++++++|+..+ ....+..+.+..... ++|+++|+||+|..............++.+++
T Consensus 97 -i~~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~ 166 (200)
T COG0218 97 -IEEYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLEL-----GIPVIVVLTKADKLKKSERNKQLNKVAEELKK 166 (200)
T ss_pred -HHHHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHHc-----CCCeEEEEEccccCChhHHHHHHHHHHHHhcC
Confidence 333443 35688899999876 566665555544444 89999999999998754333334445544443
No 461
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.37 E-value=5.8e-12 Score=128.93 Aligned_cols=96 Identities=22% Similarity=0.164 Sum_probs=65.5
Q ss_pred CccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHH---HHHH
Q 008219 73 SVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMM---PIMQ 149 (573)
Q Consensus 73 ~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~---~~~~ 149 (573)
.+++......+.+.++++++|+|+.+..+ .|.+.+.....+.|+++|+||+|+... ....+.... ....
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k--~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPK--SVNLSKIKEWMKKRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCC--CCCHHHHHHHHHHHHH
Confidence 34566777788899999999999877542 255555554447899999999999754 122222211 2233
Q ss_pred Hhcc-cCeEEEecCCCCCCchhHHHHHH
Q 008219 150 QFRE-IETCIECSALKQIQVPEVFYYAQ 176 (573)
Q Consensus 150 ~~~~-~~~~~~~Sa~~~~gi~~l~~~i~ 176 (573)
..+. ...++.+||++|.|++++++.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~ 149 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIK 149 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHH
Confidence 3332 12589999999999999998663
No 462
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.36 E-value=7.6e-12 Score=131.38 Aligned_cols=155 Identities=20% Similarity=0.111 Sum_probs=98.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------------CCCC---CCCee--ecccccCC
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN--------------------------VPPV---LPPTR--LPEDFYPD 61 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~--------------------------~~~~---~~~~~--~~~~~~~~ 61 (573)
.++.++|+++|+.++|||||+.+|+...-... .... .+.+. ....+.++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 45679999999999999999999986221000 0000 00010 12234466
Q ss_pred ceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCccc---H---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCC
Q 008219 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPET---L---DELSTFWLPELRRLEVKVP-VIVVGCKLDLRDE 134 (573)
Q Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s---~---~~~~~~~~~~l~~~~~~~p-iilv~NK~D~~~~ 134 (573)
+..+.|+||||+.+|.......+..+|++++|+|++...- + ....+ .+..+... ++| +|+++||+|....
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~e-h~~~~~~~--gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTRE-HALLAFTL--GVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHH-HHHHHHHc--CCCeEEEEEEccccccc
Confidence 7899999999999998888888999999999999886421 1 11121 33344444 666 6799999995321
Q ss_pred c-ccccHHHHHHHHHH---Hhcc---cCeEEEecCCCCCCchh
Q 008219 135 N-QQVSLEQVMMPIMQ---QFRE---IETCIECSALKQIQVPE 170 (573)
Q Consensus 135 ~-~~~~~~~~~~~~~~---~~~~---~~~~~~~Sa~~~~gi~~ 170 (573)
. .+...++....+.. ..+. ..+++++||.+|.|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 0 11122222333333 3332 13799999999999964
No 463
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.36 E-value=6.7e-12 Score=123.59 Aligned_cols=115 Identities=23% Similarity=0.289 Sum_probs=73.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-------CCCCee---eccccc--CCceeEEEEeCCCCccchhh----
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPP-------VLPPTR---LPEDFY--PDRVPITIIDTPSSVEDRGK---- 79 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~-------~~~~~~---~~~~~~--~~~~~~~i~Dt~G~~~~~~~---- 79 (573)
.++|+++|++|+|||||+|+|++..+...... ...+.. ....+. +..+++.+|||||..+....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999999876443110 111211 122222 33467999999997543210
Q ss_pred ----------hH------------hhhc--cCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 008219 80 ----------LG------------EELR--RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (573)
Q Consensus 80 ----------~~------------~~~~--~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~ 134 (573)
.. ..+. .+|+++++++.+. ..+...+..+++.+.. ++|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~~---~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLSK---RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHhc---cCCEEEEEECCCcCCH
Confidence 00 1122 4788888888665 2333332235666653 6899999999999764
No 464
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.36 E-value=2.8e-12 Score=137.95 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=76.2
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcC----------------CCeEEEEEEecCChhHHHhh
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP----------------GGTKKTVVLREIPEEAVAKL 493 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~dt~G~~~~~~~ 493 (573)
-|+++|.+|+|||||+++|.+..+........|.+.....+..+ .....+.+|||+|++.|..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 59999999999999999999987654321111111011111111 00113789999999999988
Q ss_pred hccccccccccEEEEEEeCCCh---hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 494 LSNKDSLAACDIAVFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 494 ~~~~~~~~~~d~vilv~D~~~~---~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
+..+++.+|++++|||+++. .+++.+.. +... ++|+++|+||+|+..
T Consensus 86 --~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~~------~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 86 --RKRGGALADLAILIVDINEGFKPQTQEALNI----LRMY------KTPFVVAANKIDRIP 135 (590)
T ss_pred --HHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHHc------CCCEEEEEECCCccc
Confidence 77788999999999999973 44444332 2221 789999999999964
No 465
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.35 E-value=5.4e-12 Score=136.75 Aligned_cols=124 Identities=13% Similarity=0.106 Sum_probs=87.0
Q ss_pred EEEEEcCCCCChhHHHHHhhCCC---CCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRP---FSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
.|+++|.+|+|||||+++|.+.. +........|.+.....+..++ ..+.+||++|++.|... ....+.++|++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~--~~~g~~~aD~a 77 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISN--AIAGGGGIDAA 77 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHH--HHhhhccCCEE
Confidence 68999999999999999999743 2223333444444444555552 78889999999988776 55677899999
Q ss_pred EEEEeCCCh---hhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCccccc---chhhHHHHHHHc
Q 008219 507 VFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFAM---AIQDSTRVFTFL 567 (573)
Q Consensus 507 ilv~D~~~~---~s~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~---~~~~~~~~~~~~ 567 (573)
++|+|++++ .+++.+. .+... ++| +++|+||+|+.+... ..++..++++..
T Consensus 78 ILVVDa~~G~~~qT~ehl~----il~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~ 135 (581)
T TIGR00475 78 LLVVDADEGVMTQTGEHLA----VLDLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSY 135 (581)
T ss_pred EEEEECCCCCcHHHHHHHH----HHHHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999984 3333322 22222 678 999999999976431 244556666554
No 466
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.35 E-value=4e-12 Score=121.10 Aligned_cols=113 Identities=14% Similarity=0.075 Sum_probs=77.8
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCC-----------------CCCCcccEE--EEEEEc---CCCeEEEEEEecCCh
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNY-----------------TPTTDERYA--VNVVDQ---PGGTKKTVVLREIPE 487 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~-----------------~~~~~~~~~--~~~~~~---~~~~~~~~i~dt~G~ 487 (573)
+|+|+|..++|||||+++|+........ ....+.... ...+.+ .+....+.+|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999875443221 000111111 111111 234578899999999
Q ss_pred hHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCc
Q 008219 488 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 551 (573)
Q Consensus 488 ~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 551 (573)
+.|... ...++..+|++++|+|+++..++.. ..++..+... ++|+++|+||+|+.
T Consensus 82 ~~f~~~--~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~------~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDE--VAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE------GLPIVLVINKIDRL 136 (213)
T ss_pred cchHHH--HHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEECcccC
Confidence 888766 6677899999999999998765533 3344443322 78999999999975
No 467
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.35 E-value=1.5e-11 Score=122.03 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=60.9
Q ss_pred hhhccCCEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEe
Q 008219 82 EELRRADAVVLTYACDRPE-TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIEC 160 (573)
Q Consensus 82 ~~~~~ad~il~v~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (573)
..+.++|++++|+|++++. ++..++. |+..+... ++|+++|+||+|+... . ............+ .+++.+
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr-~L~~~~~~--~ip~iIVlNK~DL~~~-~---~~~~~~~~~~~~g--~~v~~v 144 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDR-YLVAAEAA--GIEPVIVLTKADLLDD-E---EEELELVEALALG--YPVLAV 144 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHH-HHHHHHHc--CCCEEEEEEHHHCCCh-H---HHHHHHHHHHhCC--CeEEEE
Confidence 4488999999999999987 7787775 77777654 7999999999999754 1 1111112222333 288999
Q ss_pred cCCCCCCchhHHH
Q 008219 161 SALKQIQVPEVFY 173 (573)
Q Consensus 161 Sa~~~~gi~~l~~ 173 (573)
||+++.|+++|+.
T Consensus 145 SA~~g~gi~~L~~ 157 (287)
T cd01854 145 SAKTGEGLDELRE 157 (287)
T ss_pred ECCCCccHHHHHh
Confidence 9999999887765
No 468
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=5.8e-12 Score=129.08 Aligned_cols=158 Identities=16% Similarity=0.119 Sum_probs=110.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccC-CceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYP-DRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
..=|+++|+-..|||||+..+-+........+-..... +.+.++. ....+.++||||++.|..+...-..-+|++++
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 45689999999999999999988776555443211111 2222221 34579999999999999999888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHH--HHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLE--QVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
|+|+++.---+.+. -++.++.. +.|++++.||+|........... +........|+....++++||++|.|+++
T Consensus 85 VVa~dDGv~pQTiE--AI~hak~a--~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~e 160 (509)
T COG0532 85 VVAADDGVMPQTIE--AINHAKAA--GVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDE 160 (509)
T ss_pred EEEccCCcchhHHH--HHHHHHHC--CCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHH
Confidence 99998853333333 34455555 89999999999998652111000 01111223444445899999999999999
Q ss_pred HHHHHHH
Q 008219 171 VFYYAQK 177 (573)
Q Consensus 171 l~~~i~~ 177 (573)
|++.+.-
T Consensus 161 LL~~ill 167 (509)
T COG0532 161 LLELILL 167 (509)
T ss_pred HHHHHHH
Confidence 9997754
No 469
>PRK12740 elongation factor G; Reviewed
Probab=99.34 E-value=5.3e-12 Score=140.60 Aligned_cols=225 Identities=16% Similarity=0.119 Sum_probs=130.8
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCC-----CC--CCCC-----------eeecccccCCceeEEEEeCCCCccchhhhHhh
Q 008219 22 CGEKGTGKSSLIVTAAADTFPANV-----PP--VLPP-----------TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEE 83 (573)
Q Consensus 22 vG~~~vGKSSLin~l~~~~~~~~~-----~~--~~~~-----------~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (573)
+|++|+|||||+++|+...-.... .+ +.+. ......+.+.++.+.+|||||+.++......+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999754321111 00 0000 00112344678899999999998877778889
Q ss_pred hccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 84 ~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
+..+|++++|+|++......... ++..+... ++|+++|+||+|+... ...+....+...++...-...+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~--~~~~~~~~--~~p~iiv~NK~D~~~~----~~~~~~~~l~~~l~~~~~~~~~p~~ 152 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTET--VWRQAEKY--GVPRIIFVNKMDRAGA----DFFRVLAQLQEKLGAPVVPLQLPIG 152 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHH--HHHHHHHc--CCCEEEEEECCCCCCC----CHHHHHHHHHHHHCCCceeEEeccc
Confidence 99999999999998876555433 44445444 7899999999998764 2344555666666543334556666
Q ss_pred CCCCchhHHHHHHHHHhC-CCCC------CcchhhhhchhhHHHHHHHHHHhccCCCC-----CccCchhhhHHhhh---
Q 008219 164 KQIQVPEVFYYAQKAVLH-PTGP------LFDQESQALKPRCVRALKRIFILCDHDRD-----GALSDAELNDFQVK--- 228 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~~~~-~~~~------~~~~~~~~~~~~~~~~l~~i~~~~~~~~~-----~~l~~~el~~~q~~--- 228 (573)
.|.++..+.+.+...... .... ...............+++.+....+...+ ..++.+++......
T Consensus 153 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~ 232 (668)
T PRK12740 153 EGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATL 232 (668)
T ss_pred CCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 677665554433221110 0000 00000000111111222222222111111 23444444443322
Q ss_pred -------hcCCCCChhHHHHHHHHHhhhccCCc
Q 008219 229 -------CFNSPLQPSEIVGVKRVVQEKLREGV 254 (573)
Q Consensus 229 -------~~~~~l~~~~i~~l~~~i~~~~~~~~ 254 (573)
+++.+....+++.|++.+..++|+..
T Consensus 233 ~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~ 265 (668)
T PRK12740 233 AGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPL 265 (668)
T ss_pred cCCEEEEEeccccCCccHHHHHHHHHHHCCChh
Confidence 57788888999999999999988653
No 470
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.34 E-value=3.3e-12 Score=138.51 Aligned_cols=127 Identities=16% Similarity=0.113 Sum_probs=86.3
Q ss_pred cCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhc----ccccc--ccccEEEE
Q 008219 435 GPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLS----NKDSL--AACDIAVF 508 (573)
Q Consensus 435 G~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~----~~~~~--~~~d~vil 508 (573)
|++|||||||+|+|.+........+..|.+.....+..+ +..+.+|||+|...+..... .+.++ +.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~--~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ--GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC--CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 899999999999999987644444444443443444444 34678999999876543200 12222 47899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
|+|+++.+. ...+..++.+. ++|+++|+||+|+.+++....+.++++++++++++
T Consensus 79 VvDat~ler---~l~l~~ql~~~------~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv 133 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLEL------GIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVV 133 (591)
T ss_pred EecCCcchh---hHHHHHHHHhc------CCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEE
Confidence 999987532 22333333332 79999999999997655444567889999998775
No 471
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.34 E-value=1.7e-11 Score=128.27 Aligned_cols=162 Identities=17% Similarity=0.196 Sum_probs=102.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCC---CCCC-CCCCC---CCeee----------cc---ccc-------------
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADT---FPAN-VPPVL---PPTRL----------PE---DFY------------- 59 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~---~~~~-~~~~~---~~~~~----------~~---~~~------------- 59 (573)
....+.|+++|+-..|||||+.+|++.. +..+ ..+.. +.... .. .+.
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3567899999999999999999999643 1111 11100 00000 00 000
Q ss_pred ---CCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCc-ccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 008219 60 ---PDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRP-ETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN 135 (573)
Q Consensus 60 ---~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~-~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~ 135 (573)
.....+.++||||++.+.......+..+|++++|+|++.. ...+. .+ .+..+...+ -.|+|+|+||+|+....
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~e-hl~i~~~lg-i~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SE-HLAAVEIMK-LKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HH-HHHHHHHcC-CCcEEEEEecccccCHH
Confidence 0024689999999988877777888899999999999864 12111 11 223333332 24689999999997541
Q ss_pred ccccHHHHHHHHHHHh----cccCeEEEecCCCCCCchhHHHHHHHHHh
Q 008219 136 QQVSLEQVMMPIMQQF----REIETCIECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 136 ~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
. ..+....+...+ ....+++++||++|.|++.|++.+.+.+.
T Consensus 188 ~---~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 188 Q---AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred H---HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 1 112222222211 22348999999999999999998886543
No 472
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.33 E-value=1.1e-11 Score=117.81 Aligned_cols=113 Identities=15% Similarity=0.084 Sum_probs=77.2
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCC----------------cccEEEEEEEcC--------CCeEEEEEEecC
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTT----------------DERYAVNVVDQP--------GGTKKTVVLREI 485 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~--------~~~~~~~i~dt~ 485 (573)
+|+|+|..++|||||+.+|+...-.......+ +.......+.+. +....+.+|||+
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 69999999999999999998643211110111 111111112222 235678899999
Q ss_pred ChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCc
Q 008219 486 PEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 551 (573)
Q Consensus 486 G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 551 (573)
|++.|... ...+++.+|++++|+|++++.+.+.. ..+...... ++|+++|+||+|+.
T Consensus 82 G~~~f~~~--~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~~------~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSE--VTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALKE------RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHH--HHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHHc------CCCEEEEEECCCcc
Confidence 99988877 77888999999999999988655432 223333322 78999999999986
No 473
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.33 E-value=1.4e-11 Score=114.95 Aligned_cols=131 Identities=14% Similarity=0.056 Sum_probs=82.6
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCC------CCCCCCC--------CCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhh
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGR------PFSDNYT--------PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL 493 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~ 493 (573)
.++|+++|..++|||||+++|++. .....+. ...+.........+..+...+.++||+|...|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 478999999999999999999863 1100110 01111122223334335667889999999877665
Q ss_pred hccccccccccEEEEEEeCCChhhHHHHHH-HHHHHHhcCCCCCCCCc-EEEEEeCCCCccccc----chhhHHHHHHHc
Q 008219 494 LSNKDSLAACDIAVFVHDSSDESSWKRATE-LLVEVASYGEDTGFEVP-CLIVAAKDDLDSFAM----AIQDSTRVFTFL 567 (573)
Q Consensus 494 ~~~~~~~~~~d~vilv~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~----~~~~~~~~~~~~ 567 (573)
....+..+|++++|+|++.+ ...... .+..+... ++| +|+|.||+|+..+.. ..++..++.+++
T Consensus 82 --~~~~~~~~D~~ilVvda~~g--~~~~~~~~~~~~~~~------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~ 151 (195)
T cd01884 82 --MITGAAQMDGAILVVSATDG--PMPQTREHLLLARQV------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKY 151 (195)
T ss_pred --HHHHhhhCCEEEEEEECCCC--CcHHHHHHHHHHHHc------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 55667899999999999876 333332 33333333 676 778899999964221 133455555554
Q ss_pred C
Q 008219 568 V 568 (573)
Q Consensus 568 ~ 568 (573)
+
T Consensus 152 g 152 (195)
T cd01884 152 G 152 (195)
T ss_pred c
Confidence 4
No 474
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.33 E-value=8.1e-12 Score=131.61 Aligned_cols=137 Identities=14% Similarity=0.050 Sum_probs=86.5
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCC------------------------------CCCCcccEEEEEEEcCC
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY------------------------------TPTTDERYAVNVVDQPG 474 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~ 474 (573)
+++.++|+++|.+++|||||+++|+........ ...+.+..... ..+..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~-~~~~~ 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAH-KKFET 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeee-EEEec
Confidence 456799999999999999999999854322111 02233333322 22333
Q ss_pred CeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCC-CcEEEEEeCCCCccc
Q 008219 475 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFE-VPCLIVAAKDDLDSF 553 (573)
Q Consensus 475 ~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~-~p~ilv~nK~Dl~~~ 553 (573)
+...+.+|||+|++.|... ....+..+|++++|+|+++..++.....+...+.... + .|+++|+||+|+...
T Consensus 82 ~~~~i~liDtpG~~~~~~~--~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-----~~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKN--MITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-----GINQLIVAINKMDAVNY 154 (425)
T ss_pred CCeEEEEEECCCcccchhh--HhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-----CCCeEEEEEEccccccc
Confidence 5678899999999877554 3344689999999999997322333333332222222 4 468999999999742
Q ss_pred c-----cchhhHHHHHHHcCC
Q 008219 554 A-----MAIQDSTRVFTFLVM 569 (573)
Q Consensus 554 ~-----~~~~~~~~~~~~~~~ 569 (573)
. ...++..++++.+++
T Consensus 155 ~~~~~~~~~~~i~~~l~~~g~ 175 (425)
T PRK12317 155 DEKRYEEVKEEVSKLLKMVGY 175 (425)
T ss_pred cHHHHHHHHHHHHHHHHhhCC
Confidence 1 123455666665554
No 475
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.32 E-value=2.1e-11 Score=107.62 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=88.1
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCC-----CCCCCc-----ccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcc
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDN-----YTPTTD-----ERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSN 496 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~ 496 (573)
...||+|+|+.++||||+++++.......+ .....+ +-.-...+.++ +...+.+++|+|+++|..+ +
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~fm--~ 85 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKFM--W 85 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHHH--H
Confidence 457999999999999999999998775332 111111 11111223334 4467889999999999999 8
Q ss_pred ccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 497 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 497 ~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
.-+.+++.++++++|.+++..| .....+.-+.... .+|++|.+||.||....
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-----~ip~vVa~NK~DL~~a~ 137 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-----PIPVVVAINKQDLFDAL 137 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-----CCCEEEEeeccccCCCC
Confidence 8889999999999999999888 4444444444432 39999999999998754
No 476
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.4e-12 Score=111.56 Aligned_cols=120 Identities=16% Similarity=0.236 Sum_probs=95.3
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCC---CCC--CCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccc
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRP---FSD--NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLA 501 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~ 501 (573)
..+.++|+|..|+|||||+.++...- +.. .+..+.+.-..+.++.+. ..++.+||..|++..+++ +..||.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~~~l~fwdlgGQe~lrSl--w~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--NAPLSFWDLGGQESLRSL--WKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--cceeEEEEcCChHHHHHH--HHHHHH
Confidence 44679999999999999999886432 111 122233344445555554 467889999999999999 999999
Q ss_pred cccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 502 ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 502 ~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
.||++|+++|+++++.|+.....+..+......+ ++|+++.+||.|+..
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~le--g~p~L~lankqd~q~ 140 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLE--GAPVLVLANKQDLQN 140 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhc--CCchhhhcchhhhhh
Confidence 9999999999999999999998887777665444 999999999999876
No 477
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.32 E-value=1.6e-11 Score=116.49 Aligned_cols=162 Identities=15% Similarity=0.253 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecc-cc-cCCceeEEEEeCCCCccchh-----hhHhhhccCCEE
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE-DF-YPDRVPITIIDTPSSVEDRG-----KLGEELRRADAV 90 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~i~Dt~G~~~~~~-----~~~~~~~~ad~i 90 (573)
||+++|+.++||||+.+.+..+..+.+......+..+.. .+ ....+.+++||+||+..+.. ..+..++.++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 799999999999999998886554333332222222221 12 24567999999999976543 356779999999
Q ss_pred EEEEeCCCcccHHHHHH--HHHHHHHhcCCCCcEEEEEeCCCCCCCc-ccccHHHHHHHHHHHhccc----CeEEEecCC
Q 008219 91 VLTYACDRPETLDELST--FWLPELRRLEVKVPVIVVGCKLDLRDEN-QQVSLEQVMMPIMQQFREI----ETCIECSAL 163 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~--~~~~~l~~~~~~~piilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~ 163 (573)
|+|+|+...+-.+.+.. ..+..+.+.++++.+-+.++|+|+..++ +....++..+.+....... ..++.+|.-
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~ 160 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIW 160 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TT
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCc
Confidence 99999985543333331 1444556678999999999999998653 2222223333333333221 267778877
Q ss_pred CCCCchhHHHHHHHHHh
Q 008219 164 KQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~~~ 180 (573)
. ..+-+.+..++..+.
T Consensus 161 D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 161 D-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp S-THHHHHHHHHHHTTS
T ss_pred C-cHHHHHHHHHHHHHc
Confidence 6 466666666666543
No 478
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.3e-11 Score=123.38 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=112.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee----ecccccCCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR----LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
.+.--|.|+|.-.-|||||+..|.+........|- -|. ..+.+. .+.+++|.||||+..|..+...-...+|+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GG--ITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGG--ITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCC--ccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccE
Confidence 45567999999999999999999887765443321 222 222333 56889999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHH------HHhcccCeEEEecCC
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIM------QQFREIETCIECSAL 163 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~ 163 (573)
+++|+.++|.---+... -++..+.. +.|+|+.+||||..+.. .+.....+. ..+|.-.+++++||+
T Consensus 228 vVLVVAadDGVmpQT~E--aIkhAk~A--~VpiVvAinKiDkp~a~----pekv~~eL~~~gi~~E~~GGdVQvipiSAl 299 (683)
T KOG1145|consen 228 VVLVVAADDGVMPQTLE--AIKHAKSA--NVPIVVAINKIDKPGAN----PEKVKRELLSQGIVVEDLGGDVQVIPISAL 299 (683)
T ss_pred EEEEEEccCCccHhHHH--HHHHHHhc--CCCEEEEEeccCCCCCC----HHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence 99999988853333222 33344444 89999999999988752 222222222 344544589999999
Q ss_pred CCCCchhHHHHHHHH
Q 008219 164 KQIQVPEVFYYAQKA 178 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~ 178 (573)
+|.|++.|-+.+.-.
T Consensus 300 ~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 300 TGENLDLLEEAILLL 314 (683)
T ss_pred cCCChHHHHHHHHHH
Confidence 999999998877643
No 479
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.31 E-value=1e-11 Score=135.71 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=83.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCccc--EEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDER--YAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 503 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~ 503 (573)
.+..+|+|+|.+++|||||+++|.+..+........+.. .....+...+....+.+|||+|++.|..+ +...+..+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~m--r~rg~~~a 319 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSM--RSRGANVT 319 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHH--HHHHHHHC
Confidence 345689999999999999999999877654333222222 22122233334578999999999999988 77788999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 504 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 504 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
|++++|+|++++...+.... +..+... ++|+|+|+||+|+..
T Consensus 320 DiaILVVDA~dGv~~QT~E~-I~~~k~~------~iPiIVViNKiDl~~ 361 (742)
T CHL00189 320 DIAILIIAADDGVKPQTIEA-INYIQAA------NVPIIVAINKIDKAN 361 (742)
T ss_pred CEEEEEEECcCCCChhhHHH-HHHHHhc------CceEEEEEECCCccc
Confidence 99999999988532222222 2222221 899999999999975
No 480
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.30 E-value=9.2e-12 Score=127.56 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=90.8
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
+..++|+++|+.||||||||.+|+.+++....++ .-.+..+..-..+ +.....|+||...+.-... ....+++||+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~-rl~~i~IPadvtP-e~vpt~ivD~ss~~~~~~~--l~~EirkA~v 82 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPR-RLPRILIPADVTP-ENVPTSIVDTSSDSDDRLC--LRKEIRKADV 82 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccc-cCCccccCCccCc-CcCceEEEecccccchhHH--HHHHHhhcCE
Confidence 4568999999999999999999999998865532 2223333221222 3445778999765443333 3456799999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 506 AVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
+++||+++++++.+.+. .|+..+.+...+. .++|+|+||||+|.....
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~-~~~PVILvGNK~d~~~~~ 131 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDY-HETPVILVGNKSDNGDNE 131 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCC-ccCCEEEEeeccCCcccc
Confidence 99999999999999996 6888877754221 289999999999997654
No 481
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.30 E-value=7.4e-12 Score=116.85 Aligned_cols=117 Identities=22% Similarity=0.267 Sum_probs=80.6
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCC------------------CCCCcccEEEEEEEcCCCeEEEEEEecCChh
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY------------------TPTTDERYAVNVVDQPGGTKKTVVLREIPEE 488 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~ 488 (573)
+.++|+++|..++|||||+.+|++....... ....+.......+........+.++||+|+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4579999999999999999999864321110 1122222333333312356789999999998
Q ss_pred HHHhhhccccccccccEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 489 AVAKLLSNKDSLAACDIAVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 489 ~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
.|... ....++.+|++++|+|+.++. .... ..+..+... ++|+++|.||+|+...
T Consensus 82 ~f~~~--~~~~~~~~D~ailvVda~~g~--~~~~~~~l~~~~~~------~~p~ivvlNK~D~~~~ 137 (188)
T PF00009_consen 82 DFIKE--MIRGLRQADIAILVVDANDGI--QPQTEEHLKILREL------GIPIIVVLNKMDLIEK 137 (188)
T ss_dssp HHHHH--HHHHHTTSSEEEEEEETTTBS--THHHHHHHHHHHHT------T-SEEEEEETCTSSHH
T ss_pred ceeec--ccceecccccceeeeeccccc--cccccccccccccc------ccceEEeeeeccchhh
Confidence 88776 556689999999999999873 3333 333334333 7999999999999854
No 482
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=2.6e-11 Score=109.16 Aligned_cols=115 Identities=23% Similarity=0.314 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhc---cCCEEEEE
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELR---RADAVVLT 93 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---~ad~il~v 93 (573)
-.|.++|..++|||+|+-+|..+.+...+++..+ ....+..+.-.+.++|.||+.+.......+++ .+-++|||
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep---n~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP---NEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeecc---ceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 3599999999999999999998865444433222 22233334445899999999888877776666 89999999
Q ss_pred EeCCC-cccHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCC
Q 008219 94 YACDR-PETLDELSTFWLPELRRL---EVKVPVIVVGCKLDLRDE 134 (573)
Q Consensus 94 ~D~~~-~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~D~~~~ 134 (573)
+|..- .....++.++++..+... ....|+++++||.|+...
T Consensus 116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 99654 455677777788877654 357899999999998765
No 483
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.29 E-value=1.3e-11 Score=111.11 Aligned_cols=114 Identities=24% Similarity=0.225 Sum_probs=76.4
Q ss_pred EEcCCCCChhHHHHHhhCCCCCCCCCCCC-cccEEEEEEEcCCCeEEEEEEecCChhHHHhhh-----ccccccccccEE
Q 008219 433 VFGPKKAGKSVLLNSFLGRPFSDNYTPTT-DERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL-----SNKDSLAACDIA 506 (573)
Q Consensus 433 vvG~~~vGKSsLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~-----~~~~~~~~~d~v 506 (573)
++|.+|+|||||++++.+........... +........... ....+.+|||+|...+.... ....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999999876653332222 222222223322 25678899999965433210 033467899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
++|+|+++..+..... +....... +.|+++|+||+|+....
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~~------~~~~ivv~nK~D~~~~~ 120 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRER------GKPVLLVLNKIDLLPEE 120 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHhc------CCeEEEEEEccccCChh
Confidence 9999999986665554 33333322 89999999999997643
No 484
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=2.1e-11 Score=104.86 Aligned_cols=156 Identities=18% Similarity=0.250 Sum_probs=111.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
++.-|++++|-.|+|||||++.|-.++.....|+..+++. .+..++++++-+|.+|+......+..++..+|++++.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE---~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE---ELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChH---HheecCceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 4567999999999999999999988876655554333332 4556789999999999888888889999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHH--HHHHHHhcc------------cCeEE
Q 008219 94 YACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVM--MPIMQQFRE------------IETCI 158 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~--~~~~~~~~~------------~~~~~ 158 (573)
+|+-+.+.+.+.+..+-..+... -.+.|+++.+||+|..... +.++.. ..+.+..+. ...++
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~---se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA---SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc---cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 99999998888776444433322 1489999999999998872 222111 111111110 11467
Q ss_pred EecCCCCCCchhHHHHH
Q 008219 159 ECSALKQIQVPEVFYYA 175 (573)
Q Consensus 159 ~~Sa~~~~gi~~l~~~i 175 (573)
.||...+.|.-+.|.++
T Consensus 172 mcsi~~~~gy~e~fkwl 188 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWL 188 (193)
T ss_pred EEEEEccCccceeeeeh
Confidence 78888777766666554
No 485
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.3e-11 Score=106.11 Aligned_cols=117 Identities=20% Similarity=0.225 Sum_probs=93.1
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.-|++++|-.|+|||||++.|..+... ++.||... +...+.+ ++.++.-+|..|+..-+.. +..++..+|+++
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHP--TSE~l~I--g~m~ftt~DLGGH~qArr~--wkdyf~~v~~iv 92 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHP--TSEELSI--GGMTFTTFDLGGHLQARRV--WKDYFPQVDAIV 92 (193)
T ss_pred CceEEEEeecCCchhhHHHHHcccccc-ccCCCcCC--ChHHhee--cCceEEEEccccHHHHHHH--HHHHHhhhceeE
Confidence 358999999999999999999887754 44455443 2223333 4567888999999888887 899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
+.+|+.|.+.|.+....+..+....... ++|+++.+||+|.+..
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la--~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLA--TVPFLILGNKIDIPYA 136 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHh--cCcceeecccccCCCc
Confidence 9999999999999988776665544323 8999999999998764
No 486
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.28 E-value=2e-11 Score=134.79 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=83.0
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
.+...|+|+|..++|||||+++|.+..+........+.......+.+. ...+.||||+|++.|..+ ....+..+|+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m--~~rga~~aDi 363 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAM--RARGAQVTDI 363 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhH--HHhhhhhCCE
Confidence 345689999999999999999999877654443333333333344444 367889999999999888 6677889999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
++||||++++..-+.... +..+... ++|+|+++||+|+..
T Consensus 364 aILVVdAddGv~~qT~e~-i~~a~~~------~vPiIVviNKiDl~~ 403 (787)
T PRK05306 364 VVLVVAADDGVMPQTIEA-INHAKAA------GVPIIVAINKIDKPG 403 (787)
T ss_pred EEEEEECCCCCCHhHHHH-HHHHHhc------CCcEEEEEECccccc
Confidence 999999998522111122 2222222 899999999999964
No 487
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.28 E-value=1e-11 Score=116.61 Aligned_cols=112 Identities=15% Similarity=0.145 Sum_probs=69.5
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCC-CCcccEE--EEEEEcCCCeEEEEEEecCChhHH----Hhhhccccccc
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTP-TTDERYA--VNVVDQPGGTKKTVVLREIPEEAV----AKLLSNKDSLA 501 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~i~dt~G~~~~----~~~~~~~~~~~ 501 (573)
+||+++|++|||||||+|+|++......... +...... ...+... ....+.+|||+|.... ..++ ....+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l-~~~~~~ 79 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYL-EEMKFS 79 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHH-HHhCcc
Confidence 6899999999999999999999655432222 2211111 1112212 2346789999996321 1111 223467
Q ss_pred cccEEEEEEeCCChhhHHHHHHHH-HHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 502 ACDIAVFVHDSSDESSWKRATELL-VEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 502 ~~d~vilv~D~~~~~s~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
++|++++|.| .+|...+..+ ..+... +.|+++|+||+|+..
T Consensus 80 ~~d~~l~v~~----~~~~~~d~~~~~~l~~~------~~~~ilV~nK~D~~~ 121 (197)
T cd04104 80 EYDFFIIISS----TRFSSNDVKLAKAIQCM------GKKFYFVRTKVDRDL 121 (197)
T ss_pred CcCEEEEEeC----CCCCHHHHHHHHHHHHh------CCCEEEEEecccchh
Confidence 8999988844 2366665444 444443 689999999999853
No 488
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.27 E-value=2.9e-11 Score=121.52 Aligned_cols=162 Identities=17% Similarity=0.135 Sum_probs=111.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCee--ecccccCCceeEEEEeCCCCccch----hhh-----H
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDR----GKL-----G 81 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~----~~~-----~ 81 (573)
.+.-.++|||-||||||||+|.+..... +..|+ .+|+ ..+.++.+...++++||||+-+.. ..+ .
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYa---FTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYA---FTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcc---cccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 3445799999999999999988876543 22233 2333 556677777889999999975421 111 1
Q ss_pred hhhccCCEEEEEEeCCCc--ccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEE
Q 008219 82 EELRRADAVVLTYACDRP--ETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIE 159 (573)
Q Consensus 82 ~~~~~ad~il~v~D~~~~--~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (573)
...+--.+|+++.|++.. .|..... .++..++....++|+|+|+||+|....+.-....+.+..-...-+++ ++++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v-~v~~ 320 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV-KVVQ 320 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCc-eEEE
Confidence 233444678888998876 4555555 38888888888999999999999887622111222222222333333 8999
Q ss_pred ecCCCCCCchhHHHHHHHHHh
Q 008219 160 CSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 160 ~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
+|+.+.+|+.++...++..++
T Consensus 321 tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 321 TSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred ecccchhceeeHHHHHHHHHH
Confidence 999999999999988887764
No 489
>COG2262 HflX GTPases [General function prediction only]
Probab=99.27 E-value=2.8e-11 Score=120.16 Aligned_cols=123 Identities=20% Similarity=0.233 Sum_probs=93.0
Q ss_pred cCCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCC---------hhHHHhhh
Q 008219 424 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP---------EEAVAKLL 494 (573)
Q Consensus 424 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G---------~~~~~~~~ 494 (573)
.......|+++|-.|+|||||+|+|.+...........|.+.+...+.+. ++..+++-||.| .+.|.+
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~-~g~~vlLtDTVGFI~~LP~~LV~AFks-- 264 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELG-DGRKVLLTDTVGFIRDLPHPLVEAFKS-- 264 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeC-CCceEEEecCccCcccCChHHHHHHHH--
Confidence 34567799999999999999999999877655555566666777778887 467788999999 344555
Q ss_pred ccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 495 SNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 495 ~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
+.+....||+++.|+|++++...+.++....-+...... ++|+|+|.||+|+..+
T Consensus 265 -TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~---~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 265 -TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGAD---EIPIILVLNKIDLLED 319 (411)
T ss_pred -HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCC---CCCEEEEEecccccCc
Confidence 445668999999999999996555555544444443322 7999999999997653
No 490
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=2.5e-11 Score=121.18 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=113.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC----------------CCCCCC-Ceeecccc---cCCceeEEEEeCCCCccch
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPAN----------------VPPVLP-PTRLPEDF---YPDRVPITIIDTPSSVEDR 77 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~----------------~~~~~~-~~~~~~~~---~~~~~~~~i~Dt~G~~~~~ 77 (573)
+..|+.+-.-|||||..||+...-.-+ ..|+.- .......+ ++..+.++++||||+.+|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 478888999999999999986432111 111100 00012222 2467999999999999999
Q ss_pred hhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc-Ce
Q 008219 78 GKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI-ET 156 (573)
Q Consensus 78 ~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~ 156 (573)
......+..|.++++|+|++..-.-+.+.+ .+-.+.. +.-+|-|+||+|+...+ .+....++..-+|-- ..
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN-~YlAle~---~LeIiPViNKIDLP~Ad----pervk~eIe~~iGid~~d 162 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLALEN---NLEIIPVLNKIDLPAAD----PERVKQEIEDIIGIDASD 162 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHH-HHHHHHc---CcEEEEeeecccCCCCC----HHHHHHHHHHHhCCCcch
Confidence 888899999999999999887755555554 3334433 78999999999999862 233333444444421 26
Q ss_pred EEEecCCCCCCchhHHHHHHHHHhCCCC
Q 008219 157 CIECSALKQIQVPEVFYYAQKAVLHPTG 184 (573)
Q Consensus 157 ~~~~Sa~~~~gi~~l~~~i~~~~~~~~~ 184 (573)
.+.||||+|.||+++++.++..+..|..
T Consensus 163 av~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 163 AVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred heeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 8999999999999999999999877763
No 491
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.26 E-value=7.2e-12 Score=113.48 Aligned_cols=121 Identities=21% Similarity=0.236 Sum_probs=74.2
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEc-CCCeEEEEEEecCChhHHHhhh-ccccccccccEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQ-PGGTKKTVVLREIPEEAVAKLL-SNKDSLAACDIAV 507 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~dt~G~~~~~~~~-~~~~~~~~~d~vi 507 (573)
.|+++|++|+|||+|..+|..+....+..+- . .. ..... ......+.++|++|+++.+..+ ....+...+.+||
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e--~n-~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-E--NN-IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---S-S--EE-EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-c--CC-ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 5999999999999999999998654433222 1 11 12222 2244578899999998765431 1112467899999
Q ss_pred EEEeCCC-hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 508 FVHDSSD-ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 508 lv~D~~~-~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
+|+|++. ...+..+.+.+.++..........+|++|++||.|+...+
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 9999984 4456666666666554332112289999999999986543
No 492
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.26 E-value=1.4e-10 Score=105.72 Aligned_cols=56 Identities=21% Similarity=0.125 Sum_probs=42.8
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCC
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP 486 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G 486 (573)
..++++++|.||||||||+|+|.+.....+...+++|+.. ..+... ..+.++||+|
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~-~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM-QEVHLD---KKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce-EEEEeC---CCEEEEECcC
Confidence 3478999999999999999999998876666666666543 334443 2477899998
No 493
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.26 E-value=1.3e-10 Score=111.36 Aligned_cols=144 Identities=18% Similarity=0.214 Sum_probs=90.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
......|+|+|.+|+|||||++.+++..-........++.++ ....+.++.++||||.. ......++.+|++++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i~i---~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVll 109 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITV---VTGKKRRLTFIECPNDI---NAMIDIAKVADLVLL 109 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccEEE---EecCCceEEEEeCCchH---HHHHHHHHhcCEEEE
Confidence 456788999999999999999999875321111111112111 22357789999999843 333455799999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCcccccHHHHHHHHHH----HhcccCeEEEecCCCCCC
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPV-IVVGCKLDLRDENQQVSLEQVMMPIMQ----QFREIETCIECSALKQIQ 167 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~NK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~g 167 (573)
|+|++....... ..++..++.. +.|. ++|+||+|+.... ...++....+.. .+....+++.+||++...
T Consensus 110 viDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~--~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 110 LIDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKN--KTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcH--HHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 999876544333 2366666655 5775 5599999987531 112222222222 222235899999998744
Q ss_pred c
Q 008219 168 V 168 (573)
Q Consensus 168 i 168 (573)
+
T Consensus 184 ~ 184 (225)
T cd01882 184 Y 184 (225)
T ss_pred C
Confidence 3
No 494
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.26 E-value=8e-11 Score=113.40 Aligned_cols=121 Identities=20% Similarity=0.218 Sum_probs=88.8
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCCh-----hHHHhh-hcccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE-----EAVAKL-LSNKD 498 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~-----~~~~~~-~~~~~ 498 (573)
+.....|+|.|.||||||||++++.+.+......|-+|-...+..+.. +..+++++||+|. ++...+ .+...
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~--~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER--GYLRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec--CCceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 334568999999999999999999999888777776666666655544 3568999999992 111111 00122
Q ss_pred cccc-ccEEEEEEeCCCh--hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 499 SLAA-CDIAVFVHDSSDE--SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 499 ~~~~-~d~vilv~D~~~~--~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
+++. +++|++++|.+.. -+.+.+..++.++...- +.|+++|.||+|+..
T Consensus 243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f-----~~p~v~V~nK~D~~~ 294 (346)
T COG1084 243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF-----KAPIVVVINKIDIAD 294 (346)
T ss_pred HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc-----CCCeEEEEecccccc
Confidence 3333 5789999999964 46788888888887765 789999999999874
No 495
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.25 E-value=4.3e-11 Score=118.15 Aligned_cols=129 Identities=12% Similarity=0.031 Sum_probs=83.1
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCC------------------CCCcccEEEEEEEcCCCeEEEEEEecCChhHHH
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYT------------------PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA 491 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~ 491 (573)
+|+++|.+|+|||||+++|++........ ...+.......+.+ +...+.+|||+|...|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW--KGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE--CCEEEEEEECcCHHHHH
Confidence 48999999999999999997532211100 01111122222333 34678899999998776
Q ss_pred hhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCc
Q 008219 492 KLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMV 570 (573)
Q Consensus 492 ~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 570 (573)
.. ...+++.+|++++|+|+++.........| ..+... ++|+++++||+|+.... ......++.+.++.+
T Consensus 79 ~~--~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~~------~~p~iivvNK~D~~~~~-~~~~~~~l~~~~~~~ 147 (268)
T cd04170 79 GE--TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADEA------GIPRIIFINKMDRERAD-FDKTLAALQEAFGRP 147 (268)
T ss_pred HH--HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHHc------CCCEEEEEECCccCCCC-HHHHHHHHHHHhCCC
Confidence 65 66788999999999999987544333222 233322 79999999999987642 223344455555543
No 496
>PRK13796 GTPase YqeH; Provisional
Probab=99.25 E-value=8.1e-11 Score=120.65 Aligned_cols=87 Identities=22% Similarity=0.232 Sum_probs=56.7
Q ss_pred hhhccCC-EEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHH---HHHHHHHHhcc-cCe
Q 008219 82 EELRRAD-AVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQ---VMMPIMQQFRE-IET 156 (573)
Q Consensus 82 ~~~~~ad-~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~---~~~~~~~~~~~-~~~ 156 (573)
..+..+| +|++|+|+.+..+ .|.+.+.+...+.|+++|+||+|+... ....+. ......+.++. ...
T Consensus 64 ~~i~~~~~lIv~VVD~~D~~~------s~~~~L~~~~~~kpviLViNK~DLl~~--~~~~~~i~~~l~~~~k~~g~~~~~ 135 (365)
T PRK13796 64 NGIGDSDALVVNVVDIFDFNG------SWIPGLHRFVGNNPVLLVGNKADLLPK--SVKKNKVKNWLRQEAKELGLRPVD 135 (365)
T ss_pred HhhcccCcEEEEEEECccCCC------chhHHHHHHhCCCCEEEEEEchhhCCC--ccCHHHHHHHHHHHHHhcCCCcCc
Confidence 4455555 9999999877431 255666554447899999999999753 111111 12222333331 126
Q ss_pred EEEecCCCCCCchhHHHHHH
Q 008219 157 CIECSALKQIQVPEVFYYAQ 176 (573)
Q Consensus 157 ~~~~Sa~~~~gi~~l~~~i~ 176 (573)
++.+||++|.|++++++.+.
T Consensus 136 v~~vSAk~g~gI~eL~~~I~ 155 (365)
T PRK13796 136 VVLISAQKGHGIDELLEAIE 155 (365)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 89999999999999988664
No 497
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.25 E-value=5.2e-11 Score=112.47 Aligned_cols=118 Identities=17% Similarity=0.133 Sum_probs=70.9
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCC---CCCCCCCcccEEEEEEEc-------------------------C--C----
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFS---DNYTPTTDERYAVNVVDQ-------------------------P--G---- 474 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~---~~~~~~~~~~~~~~~~~~-------------------------~--~---- 474 (573)
++|+++|..++|||||+.++.+-... .......+.........+ . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 37999999999999999999764211 100001110000000000 0 0
Q ss_pred CeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 475 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 475 ~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
....+.+|||+|++.|... ....+..+|++++|+|++++.........+..+.... ..|+++|+||+|+...
T Consensus 81 ~~~~i~~iDtPG~~~~~~~--~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~-----~~~iiivvNK~Dl~~~ 152 (203)
T cd01888 81 LVRHVSFVDCPGHEILMAT--MLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG-----LKHIIIVQNKIDLVKE 152 (203)
T ss_pred cccEEEEEECCChHHHHHH--HHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC-----CCcEEEEEEchhccCH
Confidence 1257889999999887665 5566788999999999997411111112222222221 3579999999999753
No 498
>CHL00071 tufA elongation factor Tu
Probab=99.24 E-value=6.3e-11 Score=123.77 Aligned_cols=134 Identities=12% Similarity=0.016 Sum_probs=85.2
Q ss_pred cCCceEEEEEEcCCCCChhHHHHHhhCCCCCC------C---------CCCCCcccEEEEEEEcCCCeEEEEEEecCChh
Q 008219 424 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSD------N---------YTPTTDERYAVNVVDQPGGTKKTVVLREIPEE 488 (573)
Q Consensus 424 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~------~---------~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~ 488 (573)
.++..++|+++|.+++|||||+++|++..-.. . ....+.+... ....+..+...+.++||+|+.
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~-~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT-AHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc-cEEEEccCCeEEEEEECCChH
Confidence 35667999999999999999999999742110 0 0011122121 222333345678899999988
Q ss_pred HHHhhhccccccccccEEEEEEeCCChhhHHHHHH-HHHHHHhcCCCCCCCCc-EEEEEeCCCCcccccc----hhhHHH
Q 008219 489 AVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATE-LLVEVASYGEDTGFEVP-CLIVAAKDDLDSFAMA----IQDSTR 562 (573)
Q Consensus 489 ~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~----~~~~~~ 562 (573)
.|... ....+..+|++++|+|+... +..... .+..+... ++| +|++.||+|+...... ..+..+
T Consensus 87 ~~~~~--~~~~~~~~D~~ilVvda~~g--~~~qt~~~~~~~~~~------g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~ 156 (409)
T CHL00071 87 DYVKN--MITGAAQMDGAILVVSAADG--PMPQTKEHILLAKQV------GVPNIVVFLNKEDQVDDEELLELVELEVRE 156 (409)
T ss_pred HHHHH--HHHHHHhCCEEEEEEECCCC--CcHHHHHHHHHHHHc------CCCEEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 77655 44567899999999999876 333332 33333322 788 6788999999753321 235555
Q ss_pred HHHHcC
Q 008219 563 VFTFLV 568 (573)
Q Consensus 563 ~~~~~~ 568 (573)
+.+..+
T Consensus 157 ~l~~~~ 162 (409)
T CHL00071 157 LLSKYD 162 (409)
T ss_pred HHHHhC
Confidence 555544
No 499
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.24 E-value=5.2e-11 Score=116.83 Aligned_cols=112 Identities=15% Similarity=0.057 Sum_probs=74.7
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCC-----CCCC-------------CCCCcccEEEEEEEcCCCeEEEEEEecCChhHHH
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPF-----SDNY-------------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA 491 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~-----~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~ 491 (573)
+|+++|.+|+|||||+++|+...- ..+. ....+.......+.+ +...+.++||+|...|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence 489999999999999999973111 0010 001111112222333 35678899999988777
Q ss_pred hhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 492 KLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 492 ~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
.. ...+++.+|++++|+|+++...-+ ....+..+... ++|+++++||+|+..
T Consensus 79 ~~--~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~~------~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IE--VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADRY------NVPRIAFVNKMDRTG 130 (270)
T ss_pred HH--HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHHc------CCCEEEEEECCCCCC
Confidence 66 677889999999999998863211 12333333333 799999999999875
No 500
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.23 E-value=1e-10 Score=112.51 Aligned_cols=85 Identities=16% Similarity=0.052 Sum_probs=57.1
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHH----hhh-cccccccccc
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA----KLL-SNKDSLAACD 504 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~----~~~-~~~~~~~~~d 504 (573)
+|+++|.+|||||||+++|.+........+..+.......+.+. ...+.+|||+|..... .+. .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 68999999999999999999876432222222222333334443 4678899999963211 110 0234678999
Q ss_pred EEEEEEeCCChh
Q 008219 505 IAVFVHDSSDES 516 (573)
Q Consensus 505 ~vilv~D~~~~~ 516 (573)
++++|+|++++.
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999998764
Done!