Query 008219
Match_columns 573
No_of_seqs 472 out of 4674
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 20:59:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjg_A GTP-binding protein ENG 100.0 1.6E-37 5.4E-42 326.9 17.3 148 16-178 3-162 (436)
2 4dcu_A GTP-binding protein ENG 100.0 3.7E-36 1.3E-40 318.3 15.1 149 14-177 21-181 (456)
3 1mky_A Probable GTP-binding pr 100.0 7.1E-35 2.4E-39 306.9 22.2 150 18-178 3-163 (439)
4 4dkx_A RAS-related protein RAB 100.0 6.3E-29 2.2E-33 235.4 17.4 164 13-181 10-176 (216)
5 2atx_A Small GTP binding prote 99.9 6.8E-26 2.3E-30 211.6 19.8 173 8-182 10-194 (194)
6 3reg_A RHO-like small GTPase; 99.9 4.3E-26 1.5E-30 213.0 17.4 169 12-182 19-189 (194)
7 3ihw_A Centg3; RAS, centaurin, 99.9 6.3E-26 2.1E-30 210.1 17.8 164 9-180 13-179 (184)
8 3q3j_B RHO-related GTP-binding 99.9 4.9E-26 1.7E-30 216.2 16.3 174 8-183 19-205 (214)
9 3bwd_D RAC-like GTP-binding pr 99.9 6E-26 2E-30 209.5 14.7 167 13-182 5-182 (182)
10 2iwr_A Centaurin gamma 1; ANK 99.9 2.3E-25 7.8E-30 204.9 17.3 159 13-180 4-168 (178)
11 4dkx_A RAS-related protein RAB 99.9 5.4E-26 1.9E-30 215.2 13.2 141 427-572 12-153 (216)
12 2j0v_A RAC-like GTP-binding pr 99.9 3.3E-25 1.1E-29 210.1 17.5 169 13-183 6-182 (212)
13 1c1y_A RAS-related protein RAP 99.9 5E-25 1.7E-29 200.1 17.9 161 15-179 2-165 (167)
14 1m7b_A RND3/RHOE small GTP-bin 99.9 2.2E-25 7.6E-30 206.4 15.8 166 13-180 4-182 (184)
15 1mh1_A RAC1; GTP-binding, GTPa 99.9 3.9E-25 1.3E-29 204.6 17.2 169 13-183 2-182 (186)
16 2q3h_A RAS homolog gene family 99.9 3.6E-25 1.2E-29 208.0 16.9 169 10-180 14-194 (201)
17 1gwn_A RHO-related GTP-binding 99.9 3.2E-25 1.1E-29 209.0 15.6 167 12-180 24-203 (205)
18 3c5c_A RAS-like protein 12; GD 99.9 4.4E-25 1.5E-29 205.0 16.1 163 12-180 17-185 (187)
19 2bov_A RAla, RAS-related prote 99.9 1.2E-24 4.2E-29 204.9 19.2 168 8-180 6-176 (206)
20 3kkq_A RAS-related protein M-R 99.9 1.3E-24 4.4E-29 200.8 18.7 165 11-180 13-181 (183)
21 1z0f_A RAB14, member RAS oncog 99.9 1.2E-24 4.1E-29 199.9 18.3 164 12-180 11-177 (179)
22 2gco_A H9, RHO-related GTP-bin 99.9 1.1E-24 3.9E-29 204.6 18.5 165 14-180 23-199 (201)
23 1u8z_A RAS-related protein RAL 99.9 1.1E-24 3.7E-29 197.8 17.7 162 14-180 2-166 (168)
24 3t5g_A GTP-binding protein RHE 99.9 8.5E-25 2.9E-29 201.7 16.9 166 13-183 3-171 (181)
25 3oes_A GTPase rhebl1; small GT 99.9 4.4E-25 1.5E-29 207.4 15.1 170 8-182 16-188 (201)
26 3q72_A GTP-binding protein RAD 99.9 7.3E-25 2.5E-29 198.9 16.0 159 16-180 2-163 (166)
27 4gzl_A RAS-related C3 botulinu 99.9 4.9E-25 1.7E-29 207.7 15.2 165 13-179 27-203 (204)
28 2nzj_A GTP-binding protein REM 99.9 1.8E-24 6.3E-29 198.0 18.5 162 14-180 2-168 (175)
29 2a9k_A RAS-related protein RAL 99.9 1.3E-24 4.3E-29 201.3 17.5 165 11-180 13-180 (187)
30 2g3y_A GTP-binding protein GEM 99.9 1.4E-24 4.8E-29 204.9 17.8 164 12-180 33-202 (211)
31 2gf9_A RAS-related protein RAB 99.9 2.7E-24 9.1E-29 199.9 19.4 163 13-180 19-184 (189)
32 2j1l_A RHO-related GTP-binding 99.9 7.5E-25 2.6E-29 208.0 15.5 167 13-181 31-209 (214)
33 1x3s_A RAS-related protein RAB 99.9 1.8E-24 6.1E-29 201.9 17.6 165 11-181 10-178 (195)
34 3tw8_B RAS-related protein RAB 99.9 1.4E-24 4.8E-29 199.8 16.6 163 13-180 6-170 (181)
35 2hup_A RAS-related protein RAB 99.9 1.4E-24 4.8E-29 204.0 16.9 164 13-180 26-192 (201)
36 3cbq_A GTP-binding protein REM 99.9 2.2E-24 7.5E-29 201.7 17.7 164 13-181 20-188 (195)
37 1z0j_A RAB-22, RAS-related pro 99.9 2.5E-24 8.4E-29 196.0 17.6 161 14-179 4-167 (170)
38 2efe_B Small GTP-binding prote 99.9 3.9E-24 1.3E-28 197.1 19.0 163 13-180 9-174 (181)
39 1z2a_A RAS-related protein RAB 99.9 2E-24 6.7E-29 196.3 16.6 162 14-180 3-166 (168)
40 1r2q_A RAS-related protein RAB 99.9 2.4E-24 8.1E-29 196.0 17.1 161 14-179 4-167 (170)
41 2il1_A RAB12; G-protein, GDP, 99.9 1.3E-24 4.3E-29 202.8 15.6 165 12-180 22-189 (192)
42 1kao_A RAP2A; GTP-binding prot 99.9 1.8E-24 6.1E-29 196.1 16.1 160 15-179 2-164 (167)
43 2a5j_A RAS-related protein RAB 99.9 3E-24 1E-28 200.0 18.1 164 12-180 17-183 (191)
44 4dsu_A GTPase KRAS, isoform 2B 99.9 3.5E-24 1.2E-28 198.7 18.4 161 14-180 2-165 (189)
45 2fv8_A H6, RHO-related GTP-bin 99.9 2.7E-24 9.2E-29 203.1 17.8 168 14-183 23-202 (207)
46 1z08_A RAS-related protein RAB 99.9 2.2E-24 7.5E-29 196.5 16.5 162 14-180 4-168 (170)
47 3q85_A GTP-binding protein REM 99.9 1.9E-24 6.5E-29 196.8 15.8 160 16-180 2-166 (169)
48 1wms_A RAB-9, RAB9, RAS-relate 99.9 4E-24 1.4E-28 196.2 18.0 164 13-181 4-174 (177)
49 2ew1_A RAS-related protein RAB 99.9 3E-24 1E-28 201.7 17.4 162 14-180 24-188 (201)
50 1zbd_A Rabphilin-3A; G protein 99.9 6.2E-24 2.1E-28 199.8 19.5 162 14-180 6-170 (203)
51 2fg5_A RAB-22B, RAS-related pr 99.9 2.7E-24 9.4E-29 200.5 16.8 162 14-180 21-185 (192)
52 1ek0_A Protein (GTP-binding pr 99.9 3.1E-24 1.1E-28 195.2 16.6 161 15-179 2-167 (170)
53 3dz8_A RAS-related protein RAB 99.9 4.2E-25 1.4E-29 205.8 10.6 163 13-180 20-185 (191)
54 3tkl_A RAS-related protein RAB 99.9 6.7E-24 2.3E-28 198.2 18.8 164 13-181 13-179 (196)
55 2hxs_A RAB-26, RAS-related pro 99.9 1.5E-24 5.3E-29 199.2 14.2 163 14-181 4-173 (178)
56 4bas_A ADP-ribosylation factor 99.9 4.4E-24 1.5E-28 199.9 17.6 167 8-180 9-188 (199)
57 2ce2_X GTPase HRAS; signaling 99.9 8.6E-24 2.9E-28 191.3 18.6 160 15-180 2-164 (166)
58 1ky3_A GTP-binding protein YPT 99.9 3.7E-24 1.3E-28 197.2 16.4 165 13-180 5-177 (182)
59 2bme_A RAB4A, RAS-related prot 99.9 4.7E-24 1.6E-28 197.5 17.1 163 13-180 7-172 (186)
60 2g6b_A RAS-related protein RAB 99.9 1E-23 3.5E-28 194.0 19.2 165 12-181 6-174 (180)
61 2p5s_A RAS and EF-hand domain 99.9 4E-24 1.4E-28 200.5 16.7 166 11-180 23-196 (199)
62 3bc1_A RAS-related protein RAB 99.9 9E-24 3.1E-28 196.8 18.9 164 12-180 7-184 (195)
63 1g16_A RAS-related protein SEC 99.9 4.5E-24 1.5E-28 194.3 16.2 160 15-180 2-164 (170)
64 2oil_A CATX-8, RAS-related pro 99.9 7.3E-24 2.5E-28 197.6 17.9 163 13-180 22-187 (193)
65 2atv_A RERG, RAS-like estrogen 99.9 5.9E-24 2E-28 198.9 17.2 163 12-180 24-190 (196)
66 3con_A GTPase NRAS; structural 99.9 7.5E-24 2.6E-28 197.0 17.4 164 11-180 16-182 (190)
67 2erx_A GTP-binding protein DI- 99.9 5E-24 1.7E-28 194.3 15.9 160 15-179 2-165 (172)
68 2fn4_A P23, RAS-related protei 99.9 1E-23 3.4E-28 194.1 18.0 164 12-180 5-171 (181)
69 2bcg_Y Protein YP2, GTP-bindin 99.9 1.3E-23 4.5E-28 198.0 19.3 163 13-180 5-170 (206)
70 3clv_A RAB5 protein, putative; 99.9 2.2E-23 7.4E-28 195.9 20.5 161 13-180 4-203 (208)
71 3gj0_A GTP-binding nuclear pro 99.9 1.3E-24 4.4E-29 207.5 12.1 167 9-182 8-176 (221)
72 1upt_A ARL1, ADP-ribosylation 99.9 2.2E-23 7.5E-28 190.0 19.8 163 12-181 3-169 (171)
73 1z06_A RAS-related protein RAB 99.9 7.8E-24 2.7E-28 196.8 16.5 162 13-179 17-186 (189)
74 2fu5_C RAS-related protein RAB 99.9 2.2E-24 7.7E-29 199.2 12.4 162 14-180 6-170 (183)
75 1zd9_A ADP-ribosylation factor 99.9 1.1E-23 3.8E-28 195.6 16.8 162 12-179 18-183 (188)
76 3cph_A RAS-related protein SEC 99.9 1.3E-23 4.6E-28 198.9 17.6 164 10-179 14-180 (213)
77 1zj6_A ADP-ribosylation factor 99.9 1.4E-23 4.9E-28 194.6 17.4 163 14-183 14-180 (187)
78 3cpj_B GTP-binding protein YPT 99.9 1E-23 3.4E-28 201.6 16.6 165 13-182 10-177 (223)
79 2yc2_C IFT27, small RAB-relate 99.9 2.7E-24 9.2E-29 202.8 12.4 162 14-180 18-191 (208)
80 1vg8_A RAS-related protein RAB 99.9 1.1E-23 3.8E-28 198.6 16.3 163 13-180 5-174 (207)
81 1r8s_A ADP-ribosylation factor 99.9 2.2E-23 7.4E-28 188.8 17.3 156 17-179 1-160 (164)
82 1f6b_A SAR1; gtpases, N-termin 99.9 1E-23 3.5E-28 197.6 15.5 157 14-178 23-196 (198)
83 2y8e_A RAB-protein 6, GH09086P 99.9 1.6E-23 5.4E-28 192.4 16.3 161 14-179 12-175 (179)
84 2o52_A RAS-related protein RAB 99.9 8.9E-24 3E-28 198.4 14.7 162 14-180 23-187 (200)
85 1m2o_B GTP-binding protein SAR 99.9 1.9E-23 6.4E-28 194.5 16.5 156 14-177 21-188 (190)
86 2h17_A ADP-ribosylation factor 99.9 1.2E-23 4E-28 194.2 14.7 161 10-177 15-179 (181)
87 2gf0_A GTP-binding protein DI- 99.9 1.6E-23 5.4E-28 196.1 15.8 163 14-182 6-172 (199)
88 2h57_A ADP-ribosylation factor 99.9 2.7E-23 9.3E-28 193.3 17.2 163 11-179 16-185 (190)
89 1ksh_A ARF-like protein 2; sma 99.9 3.9E-23 1.4E-27 191.4 18.2 160 14-180 16-179 (186)
90 2cjw_A GTP-binding protein GEM 99.9 3.4E-23 1.2E-27 193.1 17.2 162 14-180 4-171 (192)
91 1fzq_A ADP-ribosylation factor 99.9 2.8E-23 9.4E-28 191.7 15.3 159 14-179 14-176 (181)
92 4djt_A GTP-binding nuclear pro 99.9 8.1E-24 2.8E-28 201.4 11.9 166 13-183 8-177 (218)
93 2b6h_A ADP-ribosylation factor 99.9 3.2E-23 1.1E-27 193.3 15.1 157 12-179 25-189 (192)
94 2fh5_B SR-beta, signal recogni 99.9 6.8E-23 2.3E-27 194.4 17.5 161 14-178 5-213 (214)
95 2f7s_A C25KG, RAS-related prot 99.9 1.3E-23 4.5E-28 199.8 11.8 163 13-180 22-198 (217)
96 3t1o_A Gliding protein MGLA; G 99.9 1.8E-23 6.2E-28 195.3 12.3 162 12-180 10-191 (198)
97 3llu_A RAS-related GTP-binding 99.9 3.6E-23 1.2E-27 193.5 14.3 169 8-179 12-195 (196)
98 2x77_A ADP-ribosylation factor 99.9 8.6E-23 3E-27 189.6 14.0 160 14-180 20-183 (189)
99 3th5_A RAS-related C3 botulinu 99.8 8.9E-25 3E-29 205.8 0.0 165 13-179 27-203 (204)
100 1moz_A ARL1, ADP-ribosylation 99.9 9.4E-23 3.2E-27 188.1 13.4 160 14-180 16-179 (183)
101 2wkq_A NPH1-1, RAS-related C3 99.9 2.4E-22 8.1E-27 204.0 16.6 167 14-182 153-331 (332)
102 2zej_A Dardarin, leucine-rich 99.9 5.2E-23 1.8E-27 190.4 9.8 164 16-181 2-178 (184)
103 2lkc_A Translation initiation 99.9 5.1E-22 1.8E-26 182.2 15.8 159 13-180 5-170 (178)
104 3o47_A ADP-ribosylation factor 99.9 2E-22 6.9E-27 203.5 14.0 158 13-180 162-326 (329)
105 1z06_A RAS-related protein RAB 99.9 7.7E-22 2.6E-26 183.3 16.6 144 425-572 17-162 (189)
106 3tw8_B RAS-related protein RAB 99.9 9.2E-22 3.1E-26 180.9 16.5 142 425-572 6-148 (181)
107 1svi_A GTP-binding protein YSX 99.9 6.9E-22 2.4E-26 184.4 15.7 164 8-179 15-193 (195)
108 3l0i_B RAS-related protein RAB 99.9 3.8E-24 1.3E-28 200.7 0.1 161 14-179 31-194 (199)
109 2wji_A Ferrous iron transport 99.9 3.2E-22 1.1E-26 181.6 12.8 153 15-179 2-163 (165)
110 2hup_A RAS-related protein RAB 99.9 4.3E-22 1.5E-26 187.0 14.1 145 423-572 24-170 (201)
111 2ew1_A RAS-related protein RAB 99.9 8.9E-22 3E-26 184.8 16.0 142 426-572 24-166 (201)
112 2gf9_A RAS-related protein RAB 99.9 1E-21 3.4E-26 182.5 15.5 143 425-572 19-162 (189)
113 1g16_A RAS-related protein SEC 99.9 7.9E-22 2.7E-26 179.4 14.4 141 427-572 2-142 (170)
114 1z08_A RAS-related protein RAB 99.9 1.3E-21 4.3E-26 178.1 15.5 142 426-572 4-146 (170)
115 2a5j_A RAS-related protein RAB 99.9 8.9E-22 3E-26 183.2 14.6 143 425-572 18-161 (191)
116 3q85_A GTP-binding protein REM 99.9 1.1E-21 3.8E-26 178.3 14.8 141 428-572 2-144 (169)
117 1r2q_A RAS-related protein RAB 99.9 1.2E-21 4.3E-26 177.9 14.9 141 427-572 5-146 (170)
118 3q3j_B RHO-related GTP-binding 99.9 1E-21 3.5E-26 186.3 14.9 141 425-572 24-179 (214)
119 2fu5_C RAS-related protein RAB 99.9 4.7E-22 1.6E-26 183.5 12.2 142 426-572 6-148 (183)
120 3cbq_A GTP-binding protein REM 99.9 7.3E-22 2.5E-26 184.5 13.6 144 425-572 20-165 (195)
121 3iev_A GTP-binding protein ERA 99.9 5.5E-21 1.9E-25 191.2 20.6 164 11-180 5-181 (308)
122 2efe_B Small GTP-binding prote 99.9 2.5E-21 8.7E-26 178.1 16.7 143 425-572 9-152 (181)
123 1zbd_A Rabphilin-3A; G protein 99.9 3.2E-21 1.1E-25 181.2 17.7 142 426-572 6-148 (203)
124 2qu8_A Putative nucleolar GTP- 99.9 2.4E-21 8.1E-26 185.7 16.9 165 14-180 27-204 (228)
125 3t5g_A GTP-binding protein RHE 99.9 1.5E-21 5E-26 179.8 14.8 141 427-572 5-146 (181)
126 3tkl_A RAS-related protein RAB 99.9 1.9E-21 6.4E-26 181.5 15.4 142 426-572 14-156 (196)
127 2fg5_A RAB-22B, RAS-related pr 99.9 2.4E-21 8.3E-26 180.4 15.8 142 426-572 21-163 (192)
128 2bme_A RAB4A, RAS-related prot 99.9 2.1E-21 7.2E-26 179.5 15.1 142 426-572 8-150 (186)
129 3lvq_E ARF-GAP with SH3 domain 99.9 2.1E-21 7.1E-26 208.1 17.3 156 14-180 320-483 (497)
130 3oes_A GTPase rhebl1; small GT 99.9 1.7E-21 5.7E-26 182.9 14.5 143 425-572 21-164 (201)
131 1z2a_A RAS-related protein RAB 99.9 1.6E-21 5.6E-26 176.9 13.9 141 426-572 3-144 (168)
132 1z0j_A RAB-22, RAS-related pro 99.9 3.7E-21 1.3E-25 174.9 16.3 141 427-572 5-146 (170)
133 3kkq_A RAS-related protein M-R 99.9 1.5E-21 5.1E-26 180.1 13.8 143 425-572 15-158 (183)
134 2bcg_Y Protein YP2, GTP-bindin 99.9 3.4E-21 1.2E-25 181.4 16.5 142 426-572 6-148 (206)
135 1z0f_A RAB14, member RAS oncog 99.9 2.8E-21 9.4E-26 177.3 15.4 142 426-572 13-155 (179)
136 3dz8_A RAS-related protein RAB 99.9 5.1E-22 1.7E-26 184.8 10.5 143 425-572 20-163 (191)
137 2o52_A RAS-related protein RAB 99.9 1.8E-21 6.1E-26 182.6 14.0 143 425-572 22-165 (200)
138 2oil_A CATX-8, RAS-related pro 99.9 2.1E-21 7.3E-26 180.8 14.3 143 425-572 22-165 (193)
139 1ek0_A Protein (GTP-binding pr 99.9 3.3E-21 1.1E-25 175.2 15.1 140 428-572 3-146 (170)
140 2il1_A RAB12; G-protein, GDP, 99.9 1.9E-21 6.6E-26 181.1 13.8 143 425-572 23-167 (192)
141 3gee_A MNME, tRNA modification 99.9 3.8E-21 1.3E-25 202.3 17.7 205 14-228 231-451 (476)
142 3pqc_A Probable GTP-binding pr 99.9 3.9E-21 1.3E-25 179.0 15.8 166 7-179 14-192 (195)
143 2g6b_A RAS-related protein RAB 99.9 6.9E-21 2.4E-25 175.0 17.0 142 426-572 8-151 (180)
144 2gj8_A MNME, tRNA modification 99.9 1.3E-21 4.6E-26 178.8 11.9 152 14-179 2-164 (172)
145 3r7w_A Gtpase1, GTP-binding pr 99.9 2.9E-21 9.8E-26 193.3 15.3 163 15-180 2-180 (307)
146 2g3y_A GTP-binding protein GEM 99.9 8.1E-21 2.8E-25 179.1 17.5 143 426-572 35-180 (211)
147 2nzj_A GTP-binding protein REM 99.9 5.6E-21 1.9E-25 174.6 15.9 141 427-572 3-146 (175)
148 1x3s_A RAS-related protein RAB 99.9 3.2E-21 1.1E-25 179.7 14.5 142 427-572 14-155 (195)
149 4dhe_A Probable GTP-binding pr 99.9 3E-21 1E-25 184.2 14.3 169 9-182 22-212 (223)
150 3dpu_A RAB family protein; roc 99.9 1.8E-20 6.2E-25 202.1 22.2 163 12-182 37-209 (535)
151 3q72_A GTP-binding protein RAD 99.9 4.2E-21 1.4E-25 174.0 14.5 139 428-572 2-141 (166)
152 3cpj_B GTP-binding protein YPT 99.9 3.1E-21 1.1E-25 184.2 14.1 142 426-572 11-153 (223)
153 2y8e_A RAB-protein 6, GH09086P 99.9 3.5E-21 1.2E-25 176.6 13.9 142 426-572 12-154 (179)
154 3bc1_A RAS-related protein RAB 99.9 1E-20 3.6E-25 175.9 17.3 143 426-572 9-162 (195)
155 1m7b_A RND3/RHOE small GTP-bin 99.9 5.4E-21 1.8E-25 176.7 15.2 140 426-572 5-159 (184)
156 3cph_A RAS-related protein SEC 99.9 4.9E-21 1.7E-25 181.2 15.1 143 425-572 17-159 (213)
157 3c5c_A RAS-like protein 12; GD 99.9 4.7E-21 1.6E-25 177.7 13.9 144 425-572 18-162 (187)
158 1kao_A RAP2A; GTP-binding prot 99.9 6E-21 2E-25 172.7 14.2 140 428-572 3-143 (167)
159 3reg_A RHO-like small GTPase; 99.8 7.2E-21 2.5E-25 177.4 15.0 141 425-572 20-165 (194)
160 3c5h_A Glucocorticoid receptor 99.8 2.3E-21 8E-26 188.8 11.8 165 9-179 12-253 (255)
161 1c1y_A RAS-related protein RAP 99.8 5.9E-21 2E-25 173.0 13.6 140 428-572 3-144 (167)
162 1wms_A RAB-9, RAB9, RAS-relate 99.8 1E-20 3.4E-25 173.4 15.2 145 426-572 5-151 (177)
163 3clv_A RAB5 protein, putative; 99.8 1.2E-20 4.1E-25 177.0 15.9 140 426-572 5-181 (208)
164 2p5s_A RAS and EF-hand domain 99.8 3E-21 1E-25 180.8 11.5 143 425-572 25-174 (199)
165 2f7s_A C25KG, RAS-related prot 99.8 5.2E-21 1.8E-25 181.7 13.0 144 425-572 22-176 (217)
166 2dyk_A GTP-binding protein; GT 99.8 4.9E-21 1.7E-25 172.5 12.1 149 17-178 2-159 (161)
167 4dsu_A GTPase KRAS, isoform 2B 99.8 1.3E-20 4.4E-25 174.6 15.2 141 427-572 3-143 (189)
168 1u8z_A RAS-related protein RAL 99.8 8.6E-21 2.9E-25 171.9 13.7 141 427-572 3-144 (168)
169 1gwn_A RHO-related GTP-binding 99.8 1.2E-20 4.2E-25 177.6 15.2 140 426-572 26-180 (205)
170 3a1s_A Iron(II) transport prot 99.8 7.2E-21 2.5E-25 185.3 13.9 155 14-180 3-166 (258)
171 1wf3_A GTP-binding protein; GT 99.8 3.3E-20 1.1E-24 184.6 18.9 157 14-179 5-171 (301)
172 2yc2_C IFT27, small RAB-relate 99.8 6.8E-21 2.3E-25 179.4 13.2 145 426-572 18-168 (208)
173 2fn4_A P23, RAS-related protei 99.8 7.5E-21 2.6E-25 174.7 13.2 143 425-572 6-149 (181)
174 3ihw_A Centg3; RAS, centaurin, 99.8 1.5E-20 5.3E-25 173.7 15.1 138 424-572 16-157 (184)
175 3l0i_B RAS-related protein RAB 99.8 6.3E-22 2.1E-26 185.5 5.7 144 425-573 30-174 (199)
176 2wjg_A FEOB, ferrous iron tran 99.8 6.2E-21 2.1E-25 176.8 12.2 159 13-183 4-171 (188)
177 2bov_A RAla, RAS-related prote 99.8 1.7E-20 5.7E-25 176.5 15.1 143 425-572 11-154 (206)
178 2hxs_A RAB-26, RAS-related pro 99.8 3.8E-21 1.3E-25 176.4 10.3 145 426-572 4-150 (178)
179 1vg8_A RAS-related protein RAB 99.8 1.7E-20 5.8E-25 176.6 15.1 145 426-572 6-152 (207)
180 2f9l_A RAB11B, member RAS onco 99.8 5.1E-20 1.8E-24 172.4 17.7 161 15-180 4-167 (199)
181 2atx_A Small GTP binding prote 99.8 2.3E-20 7.9E-25 173.9 15.3 140 426-572 16-170 (194)
182 3b1v_A Ferrous iron uptake tra 99.8 1.2E-20 4.1E-25 184.8 13.8 152 16-180 3-163 (272)
183 1ky3_A GTP-binding protein YPT 99.8 2.8E-20 9.5E-25 171.1 15.1 145 426-572 6-155 (182)
184 2cxx_A Probable GTP-binding pr 99.8 7.8E-21 2.7E-25 176.3 11.1 156 17-181 2-184 (190)
185 3con_A GTPase NRAS; structural 99.8 4.5E-20 1.5E-24 171.3 16.2 142 426-572 19-160 (190)
186 2a9k_A RAS-related protein RAL 99.8 2E-20 6.7E-25 172.9 13.6 142 426-572 16-158 (187)
187 2atv_A RERG, RAS-like estrogen 99.8 1.5E-20 5E-25 175.7 12.6 141 426-572 26-167 (196)
188 1oix_A RAS-related protein RAB 99.8 8E-20 2.7E-24 170.0 17.3 161 14-179 27-190 (191)
189 2j1l_A RHO-related GTP-binding 99.8 2.6E-20 9.1E-25 176.6 14.3 140 426-572 32-186 (214)
190 3geh_A MNME, tRNA modification 99.8 1.4E-20 4.7E-25 197.4 13.5 198 14-228 222-437 (462)
191 2iwr_A Centaurin gamma 1; ANK 99.8 3.8E-20 1.3E-24 169.9 14.5 138 426-572 5-146 (178)
192 2q3h_A RAS homolog gene family 99.8 2.7E-20 9.4E-25 174.5 13.7 142 424-572 16-172 (201)
193 2ce2_X GTPase HRAS; signaling 99.8 3.5E-20 1.2E-24 167.4 13.4 140 428-572 3-142 (166)
194 1xzp_A Probable tRNA modificat 99.8 9.1E-21 3.1E-25 199.5 10.9 200 15-228 242-457 (482)
195 2cjw_A GTP-binding protein GEM 99.8 5.9E-20 2E-24 171.0 15.0 142 426-572 4-149 (192)
196 2j0v_A RAC-like GTP-binding pr 99.8 2.7E-20 9.2E-25 176.1 12.7 140 426-572 7-157 (212)
197 3iby_A Ferrous iron transport 99.8 9.7E-21 3.3E-25 184.1 9.7 150 17-178 2-164 (256)
198 3r7w_B Gtpase2, GTP-binding pr 99.8 2E-20 7E-25 184.8 12.0 157 18-180 1-173 (331)
199 2gco_A H9, RHO-related GTP-bin 99.8 7.1E-20 2.4E-24 171.8 14.7 141 425-572 22-177 (201)
200 2erx_A GTP-binding protein DI- 99.8 4.2E-20 1.4E-24 168.1 12.8 142 427-572 2-144 (172)
201 2hjg_A GTP-binding protein ENG 99.8 3.9E-20 1.3E-24 194.3 13.7 161 14-180 173-348 (436)
202 1mh1_A RAC1; GTP-binding, GTPa 99.8 7.2E-20 2.5E-24 169.0 13.8 139 427-572 4-157 (186)
203 4djt_A GTP-binding nuclear pro 99.8 3.1E-20 1.1E-24 176.5 11.5 142 426-572 9-152 (218)
204 3gj0_A GTP-binding nuclear pro 99.8 1.2E-20 4.2E-25 179.8 8.6 141 425-572 12-152 (221)
205 3i8s_A Ferrous iron transport 99.8 2.8E-20 9.6E-25 183.0 11.3 154 15-180 2-168 (274)
206 4gzl_A RAS-related C3 botulinu 99.8 1.1E-19 3.7E-24 171.0 13.7 138 426-570 28-179 (204)
207 2gf0_A GTP-binding protein DI- 99.8 6.4E-20 2.2E-24 171.4 12.0 143 426-572 6-148 (199)
208 3bwd_D RAC-like GTP-binding pr 99.8 1.6E-20 5.3E-25 173.0 7.4 140 426-572 6-158 (182)
209 2fv8_A H6, RHO-related GTP-bin 99.8 1.4E-19 4.6E-24 170.7 13.6 140 426-572 23-177 (207)
210 2zej_A Dardarin, leucine-rich 99.8 3.4E-20 1.2E-24 171.4 8.7 137 428-570 2-148 (184)
211 3k53_A Ferrous iron transport 99.8 1.7E-19 5.8E-24 177.4 13.4 157 15-182 2-167 (271)
212 1zd9_A ADP-ribosylation factor 99.8 3E-19 1E-23 165.6 14.1 121 425-553 19-139 (188)
213 4bas_A ADP-ribosylation factor 99.8 3.6E-19 1.2E-23 166.4 14.5 123 425-553 14-142 (199)
214 4dcu_A GTP-binding protein ENG 99.8 4.2E-19 1.4E-23 187.5 15.7 162 13-180 192-368 (456)
215 1f6b_A SAR1; gtpases, N-termin 99.8 7.1E-19 2.4E-23 164.5 14.7 129 427-565 24-152 (198)
216 2h57_A ADP-ribosylation factor 99.8 1.1E-18 3.8E-23 162.0 15.3 133 425-564 18-151 (190)
217 3t1o_A Gliding protein MGLA; G 99.8 5.6E-20 1.9E-24 171.4 6.5 139 426-572 12-169 (198)
218 1ksh_A ARF-like protein 2; sma 99.8 2.4E-18 8.1E-23 159.0 17.4 119 426-553 16-134 (186)
219 2f9l_A RAB11B, member RAS onco 99.8 1.1E-18 3.8E-23 163.3 15.2 141 427-572 4-145 (199)
220 1nrj_B SR-beta, signal recogni 99.8 4E-19 1.4E-23 168.8 11.9 148 12-167 8-170 (218)
221 1m2o_B GTP-binding protein SAR 99.8 1.5E-18 5.1E-23 161.2 14.6 128 427-564 22-149 (190)
222 1r8s_A ADP-ribosylation factor 99.8 1.1E-18 3.7E-23 157.6 13.1 116 429-553 1-116 (164)
223 2h17_A ADP-ribosylation factor 99.8 1.4E-18 4.9E-23 159.9 13.4 119 425-552 18-136 (181)
224 1upt_A ARL1, ADP-ribosylation 99.8 3.6E-18 1.2E-22 155.2 15.9 119 426-553 5-123 (171)
225 3r7w_A Gtpase1, GTP-binding pr 99.8 1.4E-18 4.8E-23 173.7 14.2 139 427-572 2-159 (307)
226 1lnz_A SPO0B-associated GTP-bi 99.8 7.4E-19 2.5E-23 177.1 12.2 158 18-183 160-332 (342)
227 1oix_A RAS-related protein RAB 99.8 1.7E-18 5.9E-23 160.9 13.6 142 426-572 27-169 (191)
228 3llu_A RAS-related GTP-binding 99.8 3.9E-19 1.3E-23 166.0 9.2 139 425-572 17-175 (196)
229 1zj6_A ADP-ribosylation factor 99.8 9.9E-19 3.4E-23 161.8 11.5 118 426-552 14-131 (187)
230 1fzq_A ADP-ribosylation factor 99.8 1.9E-18 6.4E-23 159.2 12.7 119 426-553 14-132 (181)
231 2b6h_A ADP-ribosylation factor 99.8 1.6E-18 5.3E-23 161.4 12.0 120 425-553 26-145 (192)
232 1ega_A Protein (GTP-binding pr 99.8 3.7E-18 1.3E-22 170.0 14.4 157 14-179 6-173 (301)
233 3th5_A RAS-related C3 botulinu 99.6 3.9E-20 1.3E-24 173.9 0.0 140 426-572 28-182 (204)
234 1mky_A Probable GTP-binding pr 99.8 5.7E-18 2E-22 177.9 16.5 160 14-179 178-353 (439)
235 2x77_A ADP-ribosylation factor 99.8 4.7E-18 1.6E-22 157.5 13.4 119 426-553 20-138 (189)
236 3qq5_A Small GTP-binding prote 99.8 7.3E-19 2.5E-23 181.8 7.8 158 11-181 29-196 (423)
237 3sjy_A Translation initiation 99.8 1.5E-17 5.3E-22 172.7 17.7 166 12-182 4-193 (403)
238 1moz_A ARL1, ADP-ribosylation 99.7 5.1E-18 1.8E-22 156.2 12.2 119 426-553 16-134 (183)
239 2e87_A Hypothetical protein PH 99.7 1.3E-17 4.6E-22 170.3 16.4 158 14-179 165-334 (357)
240 2xtp_A GTPase IMAP family memb 99.7 3.4E-18 1.2E-22 167.1 11.0 167 12-183 18-210 (260)
241 2wji_A Ferrous iron transport 99.7 4.2E-18 1.4E-22 154.3 10.8 132 428-572 3-142 (165)
242 2wkq_A NPH1-1, RAS-related C3 99.7 9.6E-18 3.3E-22 169.9 13.3 140 426-572 153-307 (332)
243 3izy_P Translation initiation 99.7 6.5E-19 2.2E-23 186.8 4.3 160 15-180 3-167 (537)
244 2fh5_B SR-beta, signal recogni 99.7 1.8E-17 6.3E-22 156.8 13.3 124 426-554 5-131 (214)
245 3r7w_B Gtpase2, GTP-binding pr 99.7 2E-18 6.8E-23 170.6 6.7 132 430-572 1-152 (331)
246 3lxw_A GTPase IMAP family memb 99.7 2.7E-17 9.1E-22 159.2 14.4 168 13-185 18-212 (247)
247 1wb1_A Translation elongation 99.7 2.2E-17 7.4E-22 174.8 14.4 162 12-180 15-188 (482)
248 3lxx_A GTPase IMAP family memb 99.7 3.1E-17 1.1E-21 158.1 13.7 163 12-180 25-213 (239)
249 3c5h_A Glucocorticoid receptor 99.7 1.2E-18 4.3E-23 169.5 3.6 143 425-572 16-232 (255)
250 2ged_A SR-beta, signal recogni 99.7 2.5E-17 8.4E-22 153.1 12.2 116 14-134 46-171 (193)
251 2qtf_A Protein HFLX, GTP-bindi 99.7 4.4E-17 1.5E-21 165.9 14.3 164 14-181 176-354 (364)
252 1u0l_A Probable GTPase ENGC; p 99.7 1.5E-17 5E-22 165.7 9.8 133 31-174 32-166 (301)
253 3j2k_7 ERF3, eukaryotic polype 99.7 8.3E-17 2.8E-21 168.6 15.7 161 11-173 12-217 (439)
254 3iev_A GTP-binding protein ERA 99.7 6.9E-17 2.4E-21 161.5 14.4 136 425-568 7-153 (308)
255 3tr5_A RF-3, peptide chain rel 99.7 2.9E-17 9.8E-22 175.0 12.2 115 15-134 12-149 (528)
256 2wjg_A FEOB, ferrous iron tran 99.7 2.8E-17 9.5E-22 152.0 8.8 134 426-572 5-146 (188)
257 2ywe_A GTP-binding protein LEP 99.7 2.1E-16 7.2E-21 169.7 16.4 162 14-183 4-186 (600)
258 3o47_A ADP-ribosylation factor 99.7 5.5E-17 1.9E-21 163.7 11.1 120 425-553 162-281 (329)
259 3p26_A Elongation factor 1 alp 99.7 9.8E-17 3.3E-21 170.5 13.5 156 14-172 31-229 (483)
260 1zo1_I IF2, translation initia 99.7 9E-18 3.1E-22 176.6 5.4 158 15-177 3-163 (501)
261 2aka_B Dynamin-1; fusion prote 99.7 1.4E-16 4.9E-21 158.9 13.8 157 14-178 24-250 (299)
262 3lvq_E ARF-GAP with SH3 domain 99.7 2.6E-16 8.9E-21 168.4 16.5 119 426-553 320-438 (497)
263 3cb4_D GTP-binding protein LEP 99.7 2.2E-16 7.4E-21 170.0 15.8 161 15-183 3-184 (599)
264 1s0u_A EIF-2-gamma, translatio 99.7 3.1E-16 1.1E-20 163.1 16.3 168 13-182 5-199 (408)
265 2c78_A Elongation factor TU-A; 99.7 9.5E-17 3.2E-21 166.9 11.9 150 13-167 8-180 (405)
266 1nrj_B SR-beta, signal recogni 99.7 2.6E-17 8.9E-22 156.2 6.6 133 426-571 10-160 (218)
267 3t5d_A Septin-7; GTP-binding p 99.7 1.3E-16 4.6E-21 156.9 11.4 158 15-179 7-202 (274)
268 3a1s_A Iron(II) transport prot 99.7 7.1E-17 2.4E-21 157.0 9.3 136 426-572 3-144 (258)
269 1g7s_A Translation initiation 99.7 2.9E-16 9.8E-21 169.3 14.9 159 15-180 4-217 (594)
270 1zun_B Sulfate adenylate trans 99.7 3.7E-16 1.3E-20 163.8 15.3 157 13-173 21-216 (434)
271 2dyk_A GTP-binding protein; GT 99.7 7.9E-17 2.7E-21 144.7 8.5 126 429-569 2-135 (161)
272 2lkc_A Translation initiation 99.7 1.2E-16 4.2E-21 146.1 9.9 114 426-553 6-122 (178)
273 1pui_A ENGB, probable GTP-bind 99.7 2.6E-16 9.1E-21 148.2 12.4 163 12-179 22-197 (210)
274 2ged_A SR-beta, signal recogni 99.7 4.3E-17 1.5E-21 151.5 6.5 129 426-565 46-183 (193)
275 2cxx_A Probable GTP-binding pr 99.7 5.9E-17 2E-21 149.9 7.2 131 429-571 2-153 (190)
276 1kk1_A EIF2gamma; initiation o 99.7 7E-16 2.4E-20 160.6 15.9 161 13-182 7-201 (410)
277 2qu8_A Putative nucleolar GTP- 99.7 3.3E-16 1.1E-20 149.8 12.3 138 426-572 27-182 (228)
278 3iby_A Ferrous iron transport 99.7 4.3E-17 1.5E-21 158.3 5.8 131 429-572 2-144 (256)
279 3izq_1 HBS1P, elongation facto 99.7 4.1E-16 1.4E-20 169.2 14.1 156 14-171 165-362 (611)
280 1wf3_A GTP-binding protein; GT 99.7 3.3E-16 1.1E-20 155.7 11.7 117 428-553 7-132 (301)
281 3i8s_A Ferrous iron transport 99.7 1.2E-16 4E-21 157.1 8.1 134 428-572 3-146 (274)
282 3b1v_A Ferrous iron uptake tra 99.6 9.4E-17 3.2E-21 157.1 7.1 131 428-572 3-141 (272)
283 1d2e_A Elongation factor TU (E 99.6 2.1E-16 7.2E-21 163.7 9.7 163 15-181 2-195 (397)
284 1svi_A GTP-binding protein YSX 99.6 6.5E-16 2.2E-20 143.6 11.9 118 426-555 21-151 (195)
285 2gj8_A MNME, tRNA modification 99.6 1.3E-16 4.4E-21 145.5 6.6 119 428-552 4-129 (172)
286 3ec1_A YQEH GTPase; atnos1, at 99.6 3.9E-16 1.3E-20 159.6 10.6 98 72-177 57-158 (369)
287 3h2y_A GTPase family protein; 99.6 7.6E-16 2.6E-20 157.3 12.3 98 72-177 55-156 (368)
288 1jny_A EF-1-alpha, elongation 99.6 4.4E-16 1.5E-20 163.2 10.6 156 14-173 4-205 (435)
289 3def_A T7I23.11 protein; chlor 99.6 1.6E-15 5.5E-20 148.1 13.7 119 14-134 34-166 (262)
290 2elf_A Protein translation elo 99.6 1.9E-15 6.4E-20 154.4 13.8 147 18-179 23-178 (370)
291 3avx_A Elongation factor TS, e 99.6 1.5E-15 5.1E-20 170.3 13.2 166 12-181 292-486 (1289)
292 1f60_A Elongation factor EEF1A 99.6 1.2E-15 4E-20 160.7 11.7 155 14-172 5-203 (458)
293 3mca_A HBS1, elongation factor 99.6 2.1E-16 7.3E-21 171.0 6.1 154 13-169 174-371 (592)
294 2xex_A Elongation factor G; GT 99.6 7E-16 2.4E-20 170.1 10.1 233 13-255 7-283 (693)
295 1h65_A Chloroplast outer envel 99.6 3E-15 1E-19 146.9 13.6 119 14-134 37-169 (270)
296 3dpu_A RAB family protein; roc 99.6 3E-16 1E-20 169.2 6.8 139 425-572 38-185 (535)
297 2h5e_A Peptide chain release f 99.6 9.8E-15 3.4E-19 155.7 17.6 117 14-134 11-149 (529)
298 2dy1_A Elongation factor G; tr 99.6 6.8E-15 2.3E-19 161.7 16.7 116 13-132 6-139 (665)
299 3k53_A Ferrous iron transport 99.6 8.6E-16 2.9E-20 150.9 8.1 133 428-572 3-143 (271)
300 2j69_A Bacterial dynamin-like 99.6 4.9E-15 1.7E-19 163.5 14.4 163 14-180 67-324 (695)
301 3lxx_A GTPase IMAP family memb 99.6 4.7E-15 1.6E-19 142.8 12.3 138 425-571 26-185 (239)
302 2qag_A Septin-2, protein NEDD5 99.6 3.7E-16 1.3E-20 159.4 4.2 159 15-180 36-232 (361)
303 3pqc_A Probable GTP-binding pr 99.6 5.3E-15 1.8E-19 137.2 11.6 132 426-572 21-171 (195)
304 4dhe_A Probable GTP-binding pr 99.6 2.5E-15 8.4E-20 143.0 9.4 119 426-554 27-160 (223)
305 1r5b_A Eukaryotic peptide chai 99.6 1.9E-15 6.3E-20 159.6 9.2 156 14-172 41-243 (467)
306 1jwy_B Dynamin A GTPase domain 99.6 2.2E-14 7.4E-19 144.2 16.0 159 14-180 22-261 (315)
307 1dar_A EF-G, elongation factor 99.6 1.5E-14 5.2E-19 159.4 15.9 118 13-134 9-144 (691)
308 3gee_A MNME, tRNA modification 99.6 3.8E-15 1.3E-19 156.7 10.1 121 427-554 232-359 (476)
309 2rdo_7 EF-G, elongation factor 99.6 3.4E-14 1.2E-18 156.8 17.8 133 13-153 7-164 (704)
310 1ega_A Protein (GTP-binding pr 99.6 7.5E-15 2.6E-19 146.1 11.2 132 429-569 9-148 (301)
311 1lnz_A SPO0B-associated GTP-bi 99.6 5.4E-15 1.9E-19 148.9 9.9 133 429-568 159-301 (342)
312 4fid_A G protein alpha subunit 99.6 2.2E-14 7.6E-19 143.1 13.1 120 60-180 158-327 (340)
313 3ohm_A Guanine nucleotide-bind 99.5 4.6E-14 1.6E-18 140.4 13.1 121 60-181 164-318 (327)
314 3t34_A Dynamin-related protein 99.5 2E-14 6.8E-19 147.1 10.5 152 16-174 34-254 (360)
315 3qq5_A Small GTP-binding prote 99.5 5.6E-15 1.9E-19 152.7 6.1 136 426-572 32-173 (423)
316 2x2e_A Dynamin-1; nitration, h 99.5 1.1E-14 3.7E-19 148.5 7.9 154 15-177 30-254 (353)
317 1puj_A YLQF, conserved hypothe 99.5 7.1E-14 2.4E-18 137.2 12.3 98 67-177 3-102 (282)
318 3lxw_A GTPase IMAP family memb 99.5 3.4E-14 1.2E-18 137.3 9.7 141 426-571 19-179 (247)
319 1udx_A The GTP-binding protein 99.5 3.3E-13 1.1E-17 139.0 16.7 156 18-182 159-326 (416)
320 1xzp_A Probable tRNA modificat 99.5 1.1E-14 3.8E-19 153.2 5.5 115 427-552 242-364 (482)
321 1wxq_A GTP-binding protein; st 99.5 1.6E-14 5.6E-19 148.5 6.3 83 17-99 1-114 (397)
322 3vqt_A RF-3, peptide chain rel 99.5 2.9E-13 1E-17 144.9 16.0 114 17-134 32-167 (548)
323 2xtp_A GTPase IMAP family memb 99.5 1.7E-13 5.9E-18 133.6 12.4 138 426-569 20-177 (260)
324 3def_A T7I23.11 protein; chlor 99.5 6.8E-14 2.3E-18 136.5 9.3 121 426-552 34-165 (262)
325 2yv5_A YJEQ protein; hydrolase 99.5 4.7E-13 1.6E-17 133.0 15.2 107 61-173 48-161 (302)
326 2qpt_A EH domain-containing pr 99.5 1.1E-13 3.7E-18 148.5 11.3 119 13-134 62-233 (550)
327 2e87_A Hypothetical protein PH 99.5 2.5E-13 8.7E-18 138.6 13.2 140 426-572 165-313 (357)
328 2qnr_A Septin-2, protein NEDD5 99.4 7.6E-14 2.6E-18 138.7 7.7 160 14-181 16-214 (301)
329 3sjy_A Translation initiation 99.4 1.1E-13 3.9E-18 143.5 8.9 123 425-554 5-145 (403)
330 3t5d_A Septin-7; GTP-binding p 99.4 3.3E-13 1.1E-17 132.5 11.8 138 427-572 7-181 (274)
331 3j2k_7 ERF3, eukaryotic polype 99.4 5.1E-13 1.7E-17 139.8 13.9 135 425-569 14-193 (439)
332 3p32_A Probable GTPase RV1496/ 99.4 5.2E-14 1.8E-18 143.4 5.5 106 61-180 170-283 (355)
333 3geh_A MNME, tRNA modification 99.4 5E-14 1.7E-18 147.6 5.5 116 427-553 223-345 (462)
334 2www_A Methylmalonic aciduria 99.4 2.7E-13 9.2E-18 137.5 10.7 152 14-179 72-277 (349)
335 1h65_A Chloroplast outer envel 99.4 2.3E-13 7.9E-18 133.4 9.8 125 426-553 37-169 (270)
336 2qag_C Septin-7; cell cycle, c 99.4 2E-13 7E-18 140.7 9.2 159 15-179 30-225 (418)
337 2qag_A Septin-2, protein NEDD5 99.4 6.5E-14 2.2E-18 142.7 5.0 138 426-572 35-211 (361)
338 2qtf_A Protein HFLX, GTP-bindi 99.4 1.1E-12 3.9E-17 133.3 13.9 116 430-553 181-307 (364)
339 3p26_A Elongation factor 1 alp 99.4 3.2E-13 1.1E-17 143.4 8.9 120 425-552 30-185 (483)
340 2wsm_A Hydrogenase expression/ 99.4 4.4E-13 1.5E-17 127.1 7.9 153 15-180 29-213 (221)
341 3zvr_A Dynamin-1; hydrolase, D 99.4 1.2E-12 4.1E-17 143.2 12.1 154 15-178 50-275 (772)
342 1n0u_A EF-2, elongation factor 99.4 8.4E-13 2.9E-17 148.6 10.7 116 14-133 17-164 (842)
343 1d2e_A Elongation factor TU (E 99.4 1.2E-12 4.1E-17 135.4 10.8 134 427-569 2-154 (397)
344 3j25_A Tetracycline resistance 99.4 5.2E-13 1.8E-17 146.0 8.5 113 18-134 4-134 (638)
345 2xtz_A Guanine nucleotide-bind 99.4 1.2E-12 4.2E-17 132.1 10.2 119 61-180 181-344 (354)
346 3cb4_D GTP-binding protein LEP 99.4 1.6E-12 5.5E-17 139.9 11.4 134 427-570 3-154 (599)
347 2c78_A Elongation factor TU-A; 99.4 5.9E-13 2E-17 138.3 7.6 133 425-568 8-162 (405)
348 2aka_B Dynamin-1; fusion prote 99.4 1.4E-12 4.7E-17 129.9 10.0 119 427-554 25-208 (299)
349 3izy_P Translation initiation 99.4 2.9E-14 9.8E-19 151.2 -2.6 116 428-553 4-119 (537)
350 1zun_B Sulfate adenylate trans 99.4 2E-12 6.8E-17 135.4 11.3 132 426-568 22-192 (434)
351 1jny_A EF-1-alpha, elongation 99.4 1.1E-12 3.7E-17 137.4 9.3 132 426-568 4-181 (435)
352 1cip_A Protein (guanine nucleo 99.4 1.8E-12 6.3E-17 130.9 10.4 121 59-180 189-343 (353)
353 1yrb_A ATP(GTP)binding protein 99.3 2.6E-12 8.8E-17 125.2 10.9 164 12-179 10-255 (262)
354 1s0u_A EIF-2-gamma, translatio 99.3 1.1E-11 3.6E-16 128.9 16.0 130 426-566 6-166 (408)
355 1wb1_A Translation elongation 99.3 1.8E-12 6.2E-17 137.0 10.4 128 426-567 17-157 (482)
356 2ywe_A GTP-binding protein LEP 99.3 3.2E-12 1.1E-16 137.4 11.9 133 427-569 5-155 (600)
357 2p67_A LAO/AO transport system 99.3 9.6E-13 3.3E-17 133.2 7.5 107 60-180 146-260 (341)
358 1jal_A YCHF protein; nucleotid 99.3 3.9E-11 1.3E-15 120.8 19.1 83 16-98 2-108 (363)
359 1kk1_A EIF2gamma; initiation o 99.3 4.8E-12 1.7E-16 131.6 12.9 131 425-566 7-168 (410)
360 3izq_1 HBS1P, elongation facto 99.3 3E-12 1E-16 138.9 11.4 136 425-569 164-341 (611)
361 3ohm_A Guanine nucleotide-bind 99.3 4.6E-12 1.6E-16 126.0 11.7 76 475-554 165-250 (327)
362 3tr5_A RF-3, peptide chain rel 99.3 5.2E-13 1.8E-17 142.2 5.2 131 427-569 12-164 (528)
363 4fid_A G protein alpha subunit 99.3 4.6E-12 1.6E-16 126.4 11.6 76 475-554 159-244 (340)
364 4a9a_A Ribosome-interacting GT 99.3 3.5E-12 1.2E-16 129.2 10.5 113 16-132 72-195 (376)
365 1f60_A Elongation factor EEF1A 99.3 2.3E-12 8E-17 135.5 9.3 134 426-569 5-181 (458)
366 2qpt_A EH domain-containing pr 99.3 1.7E-12 5.7E-17 139.3 8.3 118 427-554 64-234 (550)
367 1zcb_A G alpha I/13; GTP-bindi 99.3 4.1E-12 1.4E-16 128.8 10.0 121 59-180 197-352 (362)
368 2j69_A Bacterial dynamin-like 99.3 4.9E-12 1.7E-16 139.5 11.3 120 426-553 67-245 (695)
369 3t34_A Dynamin-related protein 99.3 2E-12 6.8E-17 132.2 7.3 118 429-554 35-219 (360)
370 1jwy_B Dynamin A GTPase domain 99.3 1.9E-12 6.5E-17 129.9 6.4 70 477-554 131-214 (315)
371 2h5e_A Peptide chain release f 99.3 3.4E-12 1.2E-16 136.1 8.5 131 427-569 12-164 (529)
372 1r5b_A Eukaryotic peptide chai 99.3 2.7E-12 9.1E-17 135.4 7.6 133 425-567 40-217 (467)
373 1azs_C GS-alpha; complex (lyas 99.3 7.8E-12 2.7E-16 127.6 10.7 119 60-180 214-384 (402)
374 4fn5_A EF-G 1, elongation fact 99.3 1.8E-11 6E-16 135.8 14.2 116 15-134 11-152 (709)
375 1wxq_A GTP-binding protein; st 99.3 9.7E-12 3.3E-16 127.9 10.8 86 429-515 1-114 (397)
376 3avx_A Elongation factor TS, e 99.3 5.6E-12 1.9E-16 141.7 9.5 136 425-569 293-447 (1289)
377 1cip_A Protein (guanine nucleo 99.3 1.1E-11 3.8E-16 125.2 10.7 86 476-565 192-303 (353)
378 3cnl_A YLQF, putative uncharac 99.2 3.8E-12 1.3E-16 123.5 5.6 88 71-173 5-93 (262)
379 1g7s_A Translation initiation 99.2 4.3E-12 1.5E-16 136.8 6.5 113 428-552 5-136 (594)
380 2qag_C Septin-7; cell cycle, c 99.2 2.6E-11 9E-16 124.9 12.0 140 426-572 29-204 (418)
381 2hf9_A Probable hydrogenase ni 99.2 1.3E-11 4.5E-16 117.3 9.0 152 15-179 37-222 (226)
382 1zo1_I IF2, translation initia 99.2 1.2E-12 4.2E-17 137.5 1.9 114 428-552 4-117 (501)
383 2dby_A GTP-binding protein; GD 99.2 1.3E-11 4.4E-16 125.2 9.3 82 17-98 2-111 (368)
384 1pui_A ENGB, probable GTP-bind 99.2 2E-11 6.9E-16 114.5 9.5 131 426-568 24-170 (210)
385 3mca_A HBS1, elongation factor 99.2 2.5E-12 8.6E-17 139.1 1.5 118 425-552 174-329 (592)
386 1jal_A YCHF protein; nucleotid 99.2 7.1E-11 2.4E-15 118.9 11.5 86 429-514 3-108 (363)
387 1dar_A EF-G, elongation factor 99.2 2.6E-11 9E-16 133.6 9.1 131 426-568 10-158 (691)
388 2elf_A Protein translation elo 99.2 2E-11 6.7E-16 124.5 7.2 118 430-568 23-145 (370)
389 1n0u_A EF-2, elongation factor 99.2 2.9E-11 9.9E-16 136.1 8.4 118 426-552 17-164 (842)
390 2rdo_7 EF-G, elongation factor 99.2 1.4E-10 4.7E-15 128.1 13.4 120 426-554 8-150 (704)
391 2xex_A Elongation factor G; GT 99.2 6.7E-11 2.3E-15 130.4 10.7 117 426-553 8-142 (693)
392 2dy1_A Elongation factor G; tr 99.1 8.6E-11 2.9E-15 129.1 10.9 129 427-568 8-154 (665)
393 2x2e_A Dynamin-1; nitration, h 99.1 1.1E-10 3.6E-15 118.9 9.6 116 428-553 31-212 (353)
394 4a9a_A Ribosome-interacting GT 99.1 1.5E-10 5E-15 117.3 9.8 118 426-551 70-195 (376)
395 1udx_A The GTP-binding protein 99.1 1.1E-10 3.7E-15 120.3 8.3 138 430-571 159-301 (416)
396 2qnr_A Septin-2, protein NEDD5 99.1 9.9E-11 3.4E-15 116.1 7.2 139 427-573 17-193 (301)
397 2qm8_A GTPase/ATPase; G protei 99.1 5.6E-10 1.9E-14 112.4 12.8 153 14-179 53-259 (337)
398 1u0l_A Probable GTPase ENGC; p 99.0 7.7E-11 2.6E-15 117.0 3.5 115 443-572 32-150 (301)
399 2dby_A GTP-binding protein; GD 99.0 7.4E-10 2.5E-14 112.2 8.7 86 429-514 2-111 (368)
400 2xtz_A Guanine nucleotide-bind 98.9 2.7E-09 9.2E-14 107.6 10.0 75 475-553 181-265 (354)
401 1azs_C GS-alpha; complex (lyas 98.9 5.9E-09 2E-13 106.4 12.0 81 468-554 210-300 (402)
402 2ohf_A Protein OLA1, GTP-bindi 98.9 2E-09 6.9E-14 109.4 7.5 91 14-104 20-134 (396)
403 1t9h_A YLOQ, probable GTPase E 98.9 1.1E-09 3.9E-14 107.8 4.8 89 79-172 79-168 (307)
404 1zcb_A G alpha I/13; GTP-bindi 98.9 8.2E-09 2.8E-13 104.5 11.2 80 468-553 194-283 (362)
405 2ohf_A Protein OLA1, GTP-bindi 98.8 2.6E-09 8.8E-14 108.6 5.1 92 427-518 21-132 (396)
406 3vqt_A RF-3, peptide chain rel 98.8 1.7E-08 5.8E-13 108.0 10.7 117 427-554 30-168 (548)
407 3zvr_A Dynamin-1; hydrolase, D 98.8 2.8E-08 9.5E-13 108.9 12.5 116 428-553 51-232 (772)
408 3ec1_A YQEH GTPase; atnos1, at 98.8 5.1E-10 1.8E-14 114.2 -1.3 141 16-169 162-319 (369)
409 2rcn_A Probable GTPase ENGC; Y 98.8 6.8E-08 2.3E-12 97.0 13.6 83 83-173 127-211 (358)
410 3h2y_A GTPase family protein; 98.7 2.9E-10 1E-14 115.9 -4.3 127 16-153 160-304 (368)
411 3l82_B F-box only protein 4; T 98.7 2.2E-08 7.5E-13 91.2 7.4 106 70-179 109-221 (227)
412 1tq4_A IIGP1, interferon-induc 98.7 3.2E-07 1.1E-11 94.1 16.9 158 16-179 69-251 (413)
413 2wsm_A Hydrogenase expression/ 98.7 6.7E-09 2.3E-13 98.0 3.9 125 427-567 29-184 (221)
414 2www_A Methylmalonic aciduria 98.7 3E-09 1E-13 107.7 1.1 61 476-552 166-226 (349)
415 2j37_W Signal recognition part 98.7 4.3E-08 1.5E-12 103.1 9.7 152 14-178 99-310 (504)
416 3p32_A Probable GTPase RV1496/ 98.7 7.5E-09 2.6E-13 105.2 3.6 62 476-553 171-232 (355)
417 2qag_B Septin-6, protein NEDD5 98.6 1.4E-07 4.7E-12 96.7 9.7 113 17-134 43-191 (427)
418 4fn5_A EF-G 1, elongation fact 98.5 3.4E-07 1.2E-11 101.4 12.3 118 427-553 12-152 (709)
419 2hf9_A Probable hydrogenase ni 98.5 8.8E-10 3E-14 104.6 -7.7 29 426-454 36-64 (226)
420 3sop_A Neuronal-specific septi 98.5 3E-07 1E-11 89.3 10.1 115 16-134 2-155 (270)
421 1yrb_A ATP(GTP)binding protein 98.5 3.1E-08 1.1E-12 96.1 2.3 69 477-553 109-186 (262)
422 2p67_A LAO/AO transport system 98.5 3.1E-08 1.1E-12 100.0 2.3 62 476-553 148-209 (341)
423 3l2o_B F-box only protein 4; s 98.5 2.1E-07 7E-12 89.1 7.5 107 70-180 194-307 (312)
424 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 4.6E-07 1.6E-11 92.3 9.7 85 14-98 18-127 (392)
425 3j25_A Tetracycline resistance 98.4 8E-08 2.7E-12 105.0 2.5 115 429-554 3-135 (638)
426 3sop_A Neuronal-specific septi 98.4 8.8E-07 3E-11 86.0 9.6 136 428-572 2-177 (270)
427 2qag_B Septin-6, protein NEDD5 98.3 2.3E-06 8E-11 87.7 11.9 119 427-553 41-191 (427)
428 2v3c_C SRP54, signal recogniti 98.2 1.3E-06 4.5E-11 90.4 7.1 112 16-134 99-253 (432)
429 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 8.8E-07 3E-11 90.2 5.2 85 428-514 20-127 (392)
430 2qm8_A GTPase/ATPase; G protei 98.2 8E-07 2.8E-11 89.3 4.3 61 476-552 147-207 (337)
431 2yv5_A YJEQ protein; hydrolase 98.2 1.5E-06 5.1E-11 86.0 6.2 78 487-572 66-146 (302)
432 1puj_A YLQF, conserved hypothe 98.2 1.3E-06 4.6E-11 85.3 5.7 58 14-75 118-177 (282)
433 1f5n_A Interferon-induced guan 98.1 2.3E-06 8E-11 91.4 7.1 64 13-76 35-104 (592)
434 2j37_W Signal recognition part 98.1 1.2E-06 4.1E-11 92.1 4.7 115 427-552 100-254 (504)
435 3dm5_A SRP54, signal recogniti 98.1 1.1E-05 3.6E-10 83.2 11.2 141 15-171 99-281 (443)
436 3cnl_A YLQF, putative uncharac 98.0 2.6E-06 8.8E-11 82.3 4.3 57 17-75 100-156 (262)
437 3kl4_A SRP54, signal recogniti 97.9 7.3E-05 2.5E-09 77.0 12.4 140 15-170 96-279 (433)
438 1j8m_F SRP54, signal recogniti 97.8 4.1E-05 1.4E-09 75.2 8.9 94 61-171 179-281 (297)
439 2v3c_C SRP54, signal recogniti 97.7 3.4E-05 1.2E-09 79.8 6.4 128 429-570 100-267 (432)
440 1f5n_A Interferon-induced guan 97.7 2.6E-05 8.8E-10 83.4 5.6 63 425-487 35-101 (592)
441 3l82_B F-box only protein 4; T 97.7 2E-05 6.7E-10 71.9 3.9 77 485-569 110-190 (227)
442 2mys_B Myosin; muscle protein, 97.6 0.00023 7.7E-09 63.1 9.4 137 194-383 19-159 (166)
443 3fwb_A Cell division control p 97.6 0.00019 6.5E-09 63.0 8.4 141 193-381 16-158 (161)
444 3szr_A Interferon-induced GTP- 97.5 0.0001 3.5E-09 80.0 7.5 23 18-40 47-69 (608)
445 3dm5_A SRP54, signal recogniti 97.5 0.0003 1E-08 72.4 9.8 130 428-570 100-268 (443)
446 2obh_A Centrin-2; DNA repair c 97.5 0.00017 5.9E-09 62.3 6.8 136 198-381 4-141 (143)
447 1tq4_A IIGP1, interferon-induc 97.5 0.00021 7.2E-09 73.2 8.3 113 428-551 69-188 (413)
448 1dtl_A Cardiac troponin C; hel 97.4 0.00031 1.1E-08 61.7 8.1 145 192-382 10-158 (161)
449 3ox6_A Calcium-binding protein 97.4 0.00025 8.4E-09 61.6 7.2 144 194-381 5-151 (153)
450 2aao_A CDPK, calcium-dependent 97.4 0.00065 2.2E-08 59.9 10.1 140 194-382 21-160 (166)
451 3j04_B Myosin regulatory light 97.4 0.00014 4.7E-09 62.6 5.0 134 196-381 3-138 (143)
452 3u0k_A Rcamp; fluorescent prot 97.4 9.4E-05 3.2E-09 74.7 4.3 145 188-380 290-436 (440)
453 2bl0_C Myosin regulatory light 97.4 0.00021 7.3E-09 61.3 5.9 136 197-381 3-140 (142)
454 3qrx_A Centrin; calcium-bindin 97.4 0.00026 8.8E-09 62.8 6.5 141 194-382 22-164 (169)
455 3szr_A Interferon-induced GTP- 97.3 0.0004 1.4E-08 75.3 8.7 24 430-453 47-70 (608)
456 1top_A Troponin C; contractIle 97.3 0.00046 1.6E-08 60.6 7.4 143 194-381 14-158 (162)
457 1q80_A SCP, sarcoplasmic calci 97.3 0.00039 1.3E-08 61.9 7.0 146 197-381 3-154 (174)
458 2mys_C Myosin; muscle protein, 97.3 0.00098 3.4E-08 57.4 9.3 141 195-381 3-146 (149)
459 2lmt_A Calmodulin-related prot 97.3 0.00027 9.1E-09 61.5 5.3 139 194-380 4-144 (148)
460 3ney_A 55 kDa erythrocyte memb 97.3 0.0005 1.7E-08 62.8 7.2 31 9-39 12-42 (197)
461 1exr_A Calmodulin; high resolu 97.2 0.00052 1.8E-08 59.4 7.0 139 195-381 5-145 (148)
462 4ds7_A Calmodulin, CAM; protei 97.2 0.00029 1E-08 60.7 5.3 139 194-381 5-145 (147)
463 1nya_A Calerythrin; EF-hand, m 97.2 0.00066 2.2E-08 60.5 7.5 150 196-381 3-162 (176)
464 3dtp_E RLC, myosin regulatory 97.2 0.00036 1.2E-08 63.9 5.5 135 194-382 51-188 (196)
465 2ccm_A Calexcitin; EF hand, ca 97.2 0.0013 4.4E-08 59.6 9.0 152 195-381 7-169 (191)
466 1bif_A 6-phosphofructo-2-kinas 97.2 7.5E-05 2.6E-09 78.6 0.7 109 14-130 37-160 (469)
467 2sas_A Sarcoplasmic calcium-bi 97.2 0.0019 6.5E-08 57.9 10.0 153 196-382 4-166 (185)
468 1wdc_B Scallop myosin; calcium 97.1 0.0006 2.1E-08 59.6 6.2 134 194-381 12-148 (156)
469 3sjs_A URE3-BP sequence specif 97.1 0.00072 2.5E-08 63.2 7.1 138 191-384 42-181 (220)
470 2lvv_A Flagellar calcium-bindi 97.1 0.0007 2.4E-08 63.6 6.9 145 194-381 45-196 (226)
471 3e70_C DPA, signal recognition 97.1 0.00072 2.5E-08 67.2 6.9 142 14-171 127-310 (328)
472 2ovk_B RLC, myosin regulatory 97.1 0.00028 9.7E-09 61.5 3.5 137 193-382 9-147 (153)
473 2lhi_A Calmodulin, serine/thre 97.1 0.00048 1.6E-08 62.0 4.9 138 195-381 6-145 (176)
474 3l2o_B F-box only protein 4; s 97.0 6.6E-05 2.3E-09 71.9 -1.1 76 485-569 195-275 (312)
475 3akb_A Putative calcium bindin 97.0 0.00084 2.9E-08 59.0 6.3 143 200-381 4-158 (166)
476 1y1x_A Leishmania major homolo 97.0 0.0013 4.3E-08 59.9 7.5 129 200-383 27-157 (191)
477 2f2o_A Calmodulin fused with c 97.0 0.00082 2.8E-08 60.2 6.1 140 195-383 6-148 (179)
478 2xxa_A Signal recognition part 97.0 0.0015 5.1E-08 67.5 8.4 113 15-134 99-255 (433)
479 1j8m_F SRP54, signal recogniti 97.0 0.0012 4E-08 64.8 7.1 82 477-571 181-269 (297)
480 2hpk_A Photoprotein berovin; s 97.0 0.0011 3.6E-08 61.2 6.4 157 194-383 30-190 (208)
481 3kl4_A SRP54, signal recogniti 96.9 0.00052 1.8E-08 70.6 4.6 82 476-570 179-267 (433)
482 3k21_A PFCDPK3, calcium-depend 96.9 0.0014 4.8E-08 59.6 6.5 143 194-347 46-189 (191)
483 3pxi_A Negative regulator of g 96.9 0.0036 1.2E-07 69.9 11.0 24 16-39 201-224 (758)
484 2znd_A Programmed cell death p 96.9 0.0014 4.7E-08 58.3 6.1 131 200-384 7-139 (172)
485 3q5d_A Atlastin-1; G protein, 96.8 0.0017 5.9E-08 67.0 7.4 27 13-39 64-90 (447)
486 2ovk_C Myosin catalytic light 96.8 0.00053 1.8E-08 60.1 3.1 143 194-383 3-151 (159)
487 1rj9_A FTSY, signal recognitio 96.8 0.004 1.4E-07 61.1 9.7 24 15-38 101-124 (304)
488 2bl0_B Myosin regulatory light 96.8 0.0011 3.9E-08 56.7 5.1 131 202-382 7-139 (145)
489 3q5d_A Atlastin-1; G protein, 96.7 0.001 3.5E-08 68.6 4.9 26 426-451 65-90 (447)
490 1alv_A Calpain, S-camld; calci 96.7 0.0016 5.6E-08 57.9 5.7 128 200-383 4-140 (173)
491 3sg6_A Gcamp2, myosin light ch 96.7 0.0011 3.9E-08 68.2 5.1 141 193-381 305-447 (450)
492 1s6i_A CDPK, calcium-dependent 96.7 0.00041 1.4E-08 63.1 1.6 134 199-381 9-142 (188)
493 3ll8_B Calcineurin subunit B t 96.7 0.002 7E-08 55.8 6.1 135 197-383 3-144 (155)
494 1m45_A MLC1P, myosin light cha 96.7 0.00058 2E-08 59.0 2.4 136 202-381 6-145 (148)
495 3i5g_B Myosin regulatory light 96.7 0.0052 1.8E-07 53.7 8.6 135 192-380 8-145 (153)
496 3khe_A Calmodulin-like domain 96.7 0.00036 1.2E-08 63.3 1.0 145 196-383 36-185 (191)
497 2jnf_A Troponin C; stretch act 96.7 0.0044 1.5E-07 53.9 8.1 144 194-381 7-153 (158)
498 1wdc_C Scallop myosin; calcium 96.7 0.00067 2.3E-08 59.2 2.7 139 195-382 4-149 (156)
499 3cs1_A Flagellar calcium-bindi 96.7 0.0012 4.2E-08 61.5 4.5 145 195-382 43-194 (219)
500 3mse_B Calcium-dependent prote 96.7 0.002 6.7E-08 57.9 5.6 132 196-380 35-175 (180)
No 1
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=1.6e-37 Score=326.90 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=100.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCee--ecccccCCceeEEEEeCCCCc--------cchhhhHhh
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFP--ANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSV--------EDRGKLGEE 83 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~ 83 (573)
..+|+|+|+||||||||+|+|++..+. ...++ +|+ ....+.+.+..+.+|||||++ .+......+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g---~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 79 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPG---VTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 79 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC--------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCC---CccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 368999999999999999999987754 33444 333 344556677899999999986 344556688
Q ss_pred hccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 84 ~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
++.||++|+|+|++++.+..+. .+...++.. ++|+++|+||+|+....... .+ + ..++ ..+++++||+
T Consensus 80 ~~~ad~il~vvD~~~~~~~~d~--~~~~~l~~~--~~pvilv~NK~D~~~~~~~~--~~----~-~~lg-~~~~~~iSA~ 147 (436)
T 2hjg_A 80 MDEADVIIFMVNGREGVTAADE--EVAKILYRT--KKPVVLAVNKLDNTEMRANI--YD----F-YSLG-FGEPYPISGT 147 (436)
T ss_dssp HHHCSEEEEEEETTTCSCHHHH--HHHHHHTTC--CSCEEEEEECCCC-----CC--CS----S-GGGS-SCCCEECBTT
T ss_pred HHhCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCccchhhH--HH----H-HHcC-CCCeEEEeCc
Confidence 9999999999999988776543 366666654 89999999999987541100 01 1 1222 2378999999
Q ss_pred CCCCchhHHHHHHHH
Q 008219 164 KQIQVPEVFYYAQKA 178 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~ 178 (573)
+|.|+.++++.+.+.
T Consensus 148 ~g~gv~~L~~~i~~~ 162 (436)
T 2hjg_A 148 HGLGLGDLLDAVAEH 162 (436)
T ss_dssp TTBTHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHh
Confidence 999999999988763
No 2
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=100.00 E-value=3.7e-36 Score=318.26 Aligned_cols=149 Identities=16% Similarity=0.140 Sum_probs=99.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCee--ecccccCCceeEEEEeCCCC--------ccchhhhH
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFP--ANVPPVLPPTR--LPEDFYPDRVPITIIDTPSS--------VEDRGKLG 81 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~--------~~~~~~~~ 81 (573)
++..+|+|+|++|||||||+|+|++..+. ...++ .++ ......+.+..+.+|||||. +.+.....
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g---~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPG---VTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC--------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC---cceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 55679999999999999999999998754 33444 333 34455667889999999994 34455667
Q ss_pred hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEec
Q 008219 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (573)
Q Consensus 82 ~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (573)
.+++.+|++|+|+|..+..+. ....+.+.++.. ++|+++|+||+|+.... ....+.. .++ ...++++|
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~~--~~pvilV~NK~D~~~~~-----~~~~e~~--~lg-~~~~~~iS 165 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTA--ADEEVAKILYRT--KKPVVLAVNKLDNTEMR-----ANIYDFY--SLG-FGEPYPIS 165 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTTC--CSCEEEEEECC--------------CCSG--GGS-SSSEEECC
T ss_pred hhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHHc--CCCEEEEEECccchhhh-----hhHHHHH--HcC-CCceEEee
Confidence 889999999999997664443 333466677664 89999999999987541 0000111 122 22578999
Q ss_pred CCCCCCchhHHHHHHH
Q 008219 162 ALKQIQVPEVFYYAQK 177 (573)
Q Consensus 162 a~~~~gi~~l~~~i~~ 177 (573)
|++|.|+.++++.+.+
T Consensus 166 A~~g~gv~~L~~~i~~ 181 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAE 181 (456)
T ss_dssp TTTCTTHHHHHHHHHT
T ss_pred cccccchHHHHHHHHh
Confidence 9999999999998754
No 3
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=100.00 E-value=7.1e-35 Score=306.94 Aligned_cols=150 Identities=18% Similarity=0.154 Sum_probs=101.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeecccccCCceeEEEEeCCCCccc---------hhhhHhhhcc
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED---------RGKLGEELRR 86 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~~ 86 (573)
+|+|+|+||||||||+|+|++.+. +.+.+++.... ....+.+.+..+.+|||||++.. ..+...+++.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~-~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDP-VQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CC-SEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccce-eeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 799999999999999999998874 44555532211 33444556778999999998752 2345678999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCC
Q 008219 87 ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (573)
Q Consensus 87 ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (573)
||++++|+|+++..+..+. .+...++.. ++|+++|+||+|+... . ..+....+ ..++ ..+++++||++|.
T Consensus 82 ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~---~-~~~~~~~~-~~lg-~~~~~~iSA~~g~ 151 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE---F-EREVKPEL-YSLG-FGEPIPVSAEHNI 151 (439)
T ss_dssp CSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH---H-HHHTHHHH-GGGS-SCSCEECBTTTTB
T ss_pred CCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc---c-HHHHHHHH-HhcC-CCCEEEEeccCCC
Confidence 9999999999887665442 245555554 7999999999997532 1 11110111 1233 2368999999999
Q ss_pred CchhHHHHHHHH
Q 008219 167 QVPEVFYYAQKA 178 (573)
Q Consensus 167 gi~~l~~~i~~~ 178 (573)
|+.++++.+.+.
T Consensus 152 gv~~L~~~i~~~ 163 (439)
T 1mky_A 152 NLDTMLETIIKK 163 (439)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 999999988764
No 4
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.96 E-value=6.3e-29 Score=235.38 Aligned_cols=164 Identities=23% Similarity=0.304 Sum_probs=132.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP--TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
+++++||+|+|++|||||||+++|+.+.|...+.++.+. ......+....+.+.||||+|++++..+...+++.+|++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 457899999999999999999999999998887665543 234556667789999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
++|||++++.+|+++.. |+..++.. .+++|++|||||+|+... +.+..++. ..++..++. ++++|||++|.||+
T Consensus 90 ilv~di~~~~Sf~~i~~-~~~~i~~~~~~~~piilVgNK~Dl~~~-r~V~~~e~-~~~a~~~~~--~~~e~SAktg~nV~ 164 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTK-WIDDVRTERGSDVIIMLVGNKTDLADK-RQVSIEEG-ERKAKELNV--MFIETSAKAGYNVK 164 (216)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECTTCGGG-CCSCHHHH-HHHHHHHTC--EEEEEBTTTTBSHH
T ss_pred EEEeecchhHHHHHHHH-HHHHHHHhcCCCCeEEEEeeccchHhc-CcccHHHH-hhHHHHhCC--eeEEEeCCCCcCHH
Confidence 99999999999999985 88887653 468999999999999876 66666654 567777763 89999999999999
Q ss_pred hHHHHHHHHHhC
Q 008219 170 EVFYYAQKAVLH 181 (573)
Q Consensus 170 ~l~~~i~~~~~~ 181 (573)
++|+.+++.+..
T Consensus 165 e~F~~i~~~i~~ 176 (216)
T 4dkx_A 165 QLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 999999987643
No 5
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=6.8e-26 Score=211.62 Aligned_cols=173 Identities=23% Similarity=0.398 Sum_probs=139.4
Q ss_pred CCCCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhcc
Q 008219 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRR 86 (573)
Q Consensus 8 ~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (573)
+........+||+|+|++|||||||+++|++..+...+.++.+. ......+....+.+.+|||||++.+......+++.
T Consensus 10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 89 (194)
T 2atx_A 10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM 89 (194)
T ss_dssp CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCC
Confidence 33444457899999999999999999999999887776554433 22344555666899999999999999989999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------ccccHHHHHHHHHHHhcccC
Q 008219 87 ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIE 155 (573)
Q Consensus 87 ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 155 (573)
+|++++|||++++.++..+...|+..++...+++|+++|+||+|+.... +.+..+ ....+...++. .
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~-~ 167 (194)
T 2atx_A 90 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVE-QGQKLAKEIGA-C 167 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHH-HHHHHHHHHTC-S
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHH-HHHHHHHHcCC-c
Confidence 9999999999999999998766999998877789999999999997641 223333 33455666653 2
Q ss_pred eEEEecCCCCCCchhHHHHHHHHHhCC
Q 008219 156 TCIECSALKQIQVPEVFYYAQKAVLHP 182 (573)
Q Consensus 156 ~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 182 (573)
++++|||++|.|++++|+.+.+.++.|
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAILTP 194 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHhcC
Confidence 799999999999999999999887653
No 6
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.94 E-value=4.3e-26 Score=213.02 Aligned_cols=169 Identities=24% Similarity=0.370 Sum_probs=137.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
..++.+||+++|++|||||||+++|++..+...+.++.+... ....+.+..+.+.+|||||++.+......+++.+|++
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 346689999999999999999999999988777655443332 3444556678899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-ccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-QQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
++|||++++.++..+...|+..++...+++|+++|+||+|+.... +.+.. +....+...++. ..+++|||++|.|++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 176 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTK-QEGDDLCQKLGC-VAYIEASSVAKIGLN 176 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCH-HHHHHHHHHHTC-SCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccH-HHHHHHHHhcCC-CEEEEeecCCCCCHH
Confidence 999999999999998667999998877889999999999997532 23333 334566666663 249999999999999
Q ss_pred hHHHHHHHHHhCC
Q 008219 170 EVFYYAQKAVLHP 182 (573)
Q Consensus 170 ~l~~~i~~~~~~~ 182 (573)
++|+.+.+.+...
T Consensus 177 ~l~~~l~~~i~~~ 189 (194)
T 3reg_A 177 EVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
No 7
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.94 E-value=6.3e-26 Score=210.14 Aligned_cols=164 Identities=16% Similarity=0.183 Sum_probs=131.4
Q ss_pred CCCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCC
Q 008219 9 SGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (573)
Q Consensus 9 ~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 88 (573)
.....++.+||+|+|++|||||||+++|+++.+...+.++.+.+.....+.+..+.+.||||+|++.+. +++.+|
T Consensus 13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 344567899999999999999999999999998877666544444555666667889999999988765 788999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCc-ccccHHHHHHHHHHHhcccCeEEEecCCCC
Q 008219 89 AVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDEN-QQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (573)
Q Consensus 89 ~il~v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (573)
++++|||++++.+++.+.. |+..+.... .++|+++|+||+|+.... +.+..+ ....++..++.. ++++|||++|
T Consensus 88 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~-~~~~~~~~~~~~-~~~e~Sa~~~ 164 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDS-RARKLSTDLKRC-TYYETCATYG 164 (184)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHH-HHHHHHHHTTTC-EEEEEBTTTT
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccccCHH-HHHHHHHHcCCC-eEEEecCCCC
Confidence 9999999999999999885 999887753 579999999999996321 334444 345666776533 8999999999
Q ss_pred CCchhHHHHHHHHHh
Q 008219 166 IQVPEVFYYAQKAVL 180 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~ 180 (573)
.|++++|+++.+.+.
T Consensus 165 ~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 165 LNVERVFQDVAQKVV 179 (184)
T ss_dssp BTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 8
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.94 E-value=4.9e-26 Score=216.25 Aligned_cols=174 Identities=24% Similarity=0.341 Sum_probs=135.3
Q ss_pred CCCCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eecccccCCceeEEEEeCCCCccchhhhHhhhcc
Q 008219 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRR 86 (573)
Q Consensus 8 ~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (573)
+.+...+..+||+|+|++|||||||+++|+++.+...+.++.+.. .....+....+.+.||||+|++.+......+++.
T Consensus 19 ~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 98 (214)
T 3q3j_B 19 RAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD 98 (214)
T ss_dssp --------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred cCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCC
Confidence 344455778999999999999999999999999887765544433 2444566777899999999999999999999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------cccccHHHHHHHHHHHhcccC
Q 008219 87 ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE-----------NQQVSLEQVMMPIMQQFREIE 155 (573)
Q Consensus 87 ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 155 (573)
+|++|+|||++++.++..+...|+..++...+++|++||+||+|+..+ .+.+..+ ....++..++. .
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~-~ 176 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYE-QGCAIAKQLGA-E 176 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHH-HHHHHHHHHTC-S
T ss_pred CeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHH-HHHHHHHHcCC-C
Confidence 999999999999999999544699999988889999999999999753 1234433 34566666663 2
Q ss_pred eEEEecCCCCCC-chhHHHHHHHHHhCCC
Q 008219 156 TCIECSALKQIQ-VPEVFYYAQKAVLHPT 183 (573)
Q Consensus 156 ~~~~~Sa~~~~g-i~~l~~~i~~~~~~~~ 183 (573)
++++|||++|.| |+++|+.+.+.+....
T Consensus 177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 177 IYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 899999999998 9999999999876544
No 9
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.93 E-value=6e-26 Score=209.45 Aligned_cols=167 Identities=26% Similarity=0.412 Sum_probs=124.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
.++.+||+|+|++|||||||+++|+++.+...+.++.+. ......+....+.+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 356799999999999999999999998877665554332 2233444556677889999999999988999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccc----------cHHHHHHHHHHHhcccCeEEEec
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQV----------SLEQVMMPIMQQFREIETCIECS 161 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~S 161 (573)
+|||++++.+++.+...|+..++...+++|+++|+||+|+... +.. ..+ ....+...++. .++++||
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~v~~~-~~~~~~~~~~~-~~~~~~S 161 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD-KQFFIDHPGAVPITTV-QGEELKKLIGA-PAYIECS 161 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC-HHHHHHC--CCCCCHH-HHHHHHHHHTC-SEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcC-cccccccccCCCCCHH-HHHHHHHHcCC-CEEEEEE
Confidence 9999999999999986799999887778999999999998765 221 222 33455666653 3899999
Q ss_pred CCCCCCchhHHHHHHHHHhCC
Q 008219 162 ALKQIQVPEVFYYAQKAVLHP 182 (573)
Q Consensus 162 a~~~~gi~~l~~~i~~~~~~~ 182 (573)
|++|.|++++|+.+.+.++.|
T Consensus 162 a~~~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 162 SKSQENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999877643
No 10
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.93 E-value=2.3e-25 Score=204.91 Aligned_cols=159 Identities=16% Similarity=0.189 Sum_probs=122.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
..+.+||+++|++|||||||+++|+++.+....+ +.+. ......+....+.+.+|||||++. ..+++.+|+++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEK-TESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSS-CSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCC-CcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 4578999999999999999999999998876433 3333 334455556678899999999876 46788999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCC-cccccHHHHHHHHHHHhcccCeEEEecCCCCC
Q 008219 92 LTYACDRPETLDELSTFWLPELRRL----EVKVPVIVVGCKLDLRDE-NQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~----~~~~piilv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (573)
+|||++++.++..+.. |+..+... .+++|+++|+||+|+... .+.+..++ ...+...++.. ++++|||++|.
T Consensus 78 lv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~-~~~~~~~~~~~-~~~~~Sa~~~~ 154 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR-ARALXADMKRC-SYYETXATYGL 154 (178)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHH-HHHHHHHHSSE-EEEEEBTTTTB
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHH-HHHHHHhhcCC-eEEEEeccccC
Confidence 9999999999999885 66555442 258999999999999532 13344443 34555555433 89999999999
Q ss_pred CchhHHHHHHHHHh
Q 008219 167 QVPEVFYYAQKAVL 180 (573)
Q Consensus 167 gi~~l~~~i~~~~~ 180 (573)
|++++|+.+.+.+.
T Consensus 155 ~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 155 NVDRVFQEVAQKVV 168 (178)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988754
No 11
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.93 E-value=5.4e-26 Score=215.20 Aligned_cols=141 Identities=19% Similarity=0.277 Sum_probs=119.9
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
+.+||+|||++|||||||+++|+.+.+...+.+|.+.++..+.+...+...++.||||+|+++|.++ +..++++++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l--~~~~~~~a~~~ 89 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSL--IPSYIRDSAAA 89 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGG--HHHHHTTCSEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhH--HHHHhccccEE
Confidence 4589999999999999999999999999999999998888888888877889999999999999999 88999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.||+.+..|+..+...... ++|++|||||+|+...+ +..++++++|++++++||
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~---~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~ 153 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGS---DVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFI 153 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTT---SSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCC---CCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeE
Confidence 9999999999999999999998776543 79999999999998766 678999999999999886
No 12
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.93 E-value=3.3e-25 Score=210.10 Aligned_cols=169 Identities=27% Similarity=0.398 Sum_probs=135.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
....+||+|+|++|||||||+++|+++.+...+.++.+. ......+.+..+.+.||||||++.+...+..+++.+|+++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 356799999999999999999999998887666554443 3344455666789999999999999988889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccc-------cHHHHHHHHHHHhcccCeEEEecCCC
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQV-------SLEQVMMPIMQQFREIETCIECSALK 164 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (573)
+|||++++.++..+...|+..++...+++|++||+||+|+... +.+ ...+....+...++. .++++|||++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~ 163 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD-KGYLADHTNVITSTQGEELRKQIGA-AAYIECSSKT 163 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC-HHHHHTCSSCCCHHHHHHHHHHHTC-SEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhC-ccccccccCCCCHHHHHHHHHHcCC-ceEEEccCCC
Confidence 9999999999999876799999887778999999999998765 221 012333556666653 3899999999
Q ss_pred CCCchhHHHHHHHHHhCCC
Q 008219 165 QIQVPEVFYYAQKAVLHPT 183 (573)
Q Consensus 165 ~~gi~~l~~~i~~~~~~~~ 183 (573)
|.|++++|+.+.+.+....
T Consensus 164 g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHhhhh
Confidence 9999999999999886543
No 13
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.93 E-value=5e-25 Score=200.05 Aligned_cols=161 Identities=25% Similarity=0.376 Sum_probs=129.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
+.+||+++|++|||||||+++|+++.+...+.++.+... ....+....+.+.+|||||++.+......+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 579999999999999999999999888766555433222 3444556678899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
||++++.+++.+.. |+..+... ..++|+++|+||+|+... +.+..++ ...+...++.. ++++|||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDE-RVVGKEQ-GQNLARQWCNC-AFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGG-CCSCHHH-HHHHHHHTTSC-EEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECcccccc-ccCCHHH-HHHHHHHccCC-cEEEecCCCCCCHHHH
Confidence 99999999998875 77776553 358999999999999764 3344333 34555665433 8999999999999999
Q ss_pred HHHHHHHH
Q 008219 172 FYYAQKAV 179 (573)
Q Consensus 172 ~~~i~~~~ 179 (573)
++++.+.+
T Consensus 158 ~~~l~~~i 165 (167)
T 1c1y_A 158 FYDLVRQI 165 (167)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 14
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.93 E-value=2.2e-25 Score=206.36 Aligned_cols=166 Identities=30% Similarity=0.447 Sum_probs=133.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
....+||+|+|++|||||||+++|++..+...+.++.+. +.....+....+.+.+|||||++.+......+++.+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 456799999999999999999999998887665544332 2234455667789999999999999888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------ccccHHHHHHHHHHHhcccCeEEEe
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIEC 160 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (573)
+|||++++.+++.+...|+..++...++.|+++|+||+|+.... +.+..++ ...++..++.. ++++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~-~~~e~ 161 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ-GANMAKQIGAA-TYIEC 161 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH-HHHHHHHHTCS-EEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHH-HHHHHHHcCCc-EEEEe
Confidence 99999999999998556999998877799999999999997421 2233333 34566666533 89999
Q ss_pred cCC-CCCCchhHHHHHHHHHh
Q 008219 161 SAL-KQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 161 Sa~-~~~gi~~l~~~i~~~~~ 180 (573)
||+ +|.|++++|+.+.+.++
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHH
T ss_pred eecCCCcCHHHHHHHHHHHHh
Confidence 999 68999999999998765
No 15
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.93 E-value=3.9e-25 Score=204.59 Aligned_cols=169 Identities=24% Similarity=0.420 Sum_probs=136.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
.++.+||+++|++|||||||+++|+++.+...+.++..... ....+....+.+.+|||||++.+......+++.+|+++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 35689999999999999999999999888776555444332 34455566788999999999999888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------ccccHHHHHHHHHHHhcccCeEEEe
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIEC 160 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (573)
+|||++++.++..+...|+..++...+++|+++|+||+|+.... +.+..+ ....+...++. .++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~-~~~~~~ 159 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYP-QGLAMAKEIGA-VKYLEC 159 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHH-HHHHHHHHTTC-SEEEEC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHH-HHHHHHHhcCC-cEEEEe
Confidence 99999999999998766999998877789999999999987641 122222 23445555542 389999
Q ss_pred cCCCCCCchhHHHHHHHHHhCCC
Q 008219 161 SALKQIQVPEVFYYAQKAVLHPT 183 (573)
Q Consensus 161 Sa~~~~gi~~l~~~i~~~~~~~~ 183 (573)
||++|.|++++++.+.+.+..+.
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 160 SALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHSCCC
T ss_pred cCCCccCHHHHHHHHHHHHhccc
Confidence 99999999999999999876543
No 16
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.93 E-value=3.6e-25 Score=207.96 Aligned_cols=169 Identities=27% Similarity=0.400 Sum_probs=126.6
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCC
Q 008219 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (573)
Q Consensus 10 ~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 88 (573)
+......+||+|+|++|||||||+++|++..+...++++.+... ....+.+..+.+.+|||||++.+...+..+++.+|
T Consensus 14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 33456789999999999999999999999887776655443322 33444455678999999999999888889999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------ccccHHHHHHHHHHHhcccCeE
Q 008219 89 AVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETC 157 (573)
Q Consensus 89 ~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 157 (573)
++++|||++++.++..+...|+..+....+++|+++|+||+|+.... +.+..+ ....+...++. .++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~-~~~ 171 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEE-AAKLLAEEIKA-ASY 171 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHH-HHHHHHHHHTC-SEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHH-HHHHHHHhcCC-cEE
Confidence 99999999999999998766999998877799999999999997531 223333 33455556553 389
Q ss_pred EEecCCCCCCchhHHHHHHHHHh
Q 008219 158 IECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 158 ~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
++|||++|.|++++|+.+.+.+.
T Consensus 172 ~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 172 IECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 17
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.93 E-value=3.2e-25 Score=209.01 Aligned_cols=167 Identities=30% Similarity=0.445 Sum_probs=132.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
.....+||+|+|++|||||||+++|++..+...+.++.+. +.....+....+.+.||||||++.+......+++.+|++
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 3456799999999999999999999999887665544332 223445556678999999999999988888999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------ccccHHHHHHHHHHHhcccCeEEE
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIE 159 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 159 (573)
|+|||++++.++..+...|+..++...++.|+++|+||+|+.... +.+..++ ...++..++.. ++++
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~-~~~e 181 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ-GANMAKQIGAA-TYIE 181 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH-HHHHHHHHTCS-EEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHH-HHHHHHHcCCC-EEEE
Confidence 999999999999998556999998877789999999999997421 2233333 35566666532 8999
Q ss_pred ecCC-CCCCchhHHHHHHHHHh
Q 008219 160 CSAL-KQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 160 ~Sa~-~~~gi~~l~~~i~~~~~ 180 (573)
|||+ +|.|++++|+.+.+.++
T Consensus 182 ~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 182 CSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHHHHh
Confidence 9999 68999999999988754
No 18
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.93 E-value=4.4e-25 Score=204.98 Aligned_cols=163 Identities=26% Similarity=0.351 Sum_probs=127.8
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
.....+||+|+|++|||||||+++|+++.+...+.++.+... ....+....+.+.||||||++.+... ..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 446789999999999999999999999988777666554332 34455566788999999999887764 6789999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecC-CCC
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA-LKQ 165 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~ 165 (573)
++|||++++.+++.+.. |+..+.... .++|+++|+||+|+... +.+..++ ...++..++. ++++||| ++|
T Consensus 96 ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~-~~v~~~~-~~~~~~~~~~--~~~e~Sa~~~g 170 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALLLGNKLDMAQY-RQVTKAE-GVALAGRFGC--LFFEVSACLDF 170 (187)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEEEECGGGGGG-CSSCHHH-HHHHHHHHTC--EEEECCSSSCS
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHHhhccCCCCCEEEEEECcchhhc-CccCHHH-HHHHHHHcCC--cEEEEeecCcc
Confidence 99999999999999884 888887642 58999999999999764 4444443 3556666653 8999999 899
Q ss_pred CCchhHHHHHHHHHh
Q 008219 166 IQVPEVFYYAQKAVL 180 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~ 180 (573)
.||+++|+.+.+.+.
T Consensus 171 ~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 171 EHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh
Confidence 999999999988653
No 19
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=204.89 Aligned_cols=168 Identities=22% Similarity=0.345 Sum_probs=133.7
Q ss_pred CCCCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhcc
Q 008219 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRR 86 (573)
Q Consensus 8 ~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (573)
..+...++.+||+|+|++|||||||+++|++..+...++++.+... ....+....+.+.||||||++.+......+++.
T Consensus 6 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (206)
T 2bov_A 6 PKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS 85 (206)
T ss_dssp -----CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHH
T ss_pred ccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhh
Confidence 3344556789999999999999999999999888777666554433 344455556789999999999999999999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCC
Q 008219 87 ADAVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (573)
Q Consensus 87 ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (573)
+|++++|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+..++. ..+...++. +++++||++
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~-~~~~~~~~~--~~~~~Sa~~ 160 (206)
T 2bov_A 86 GEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK-RQVSVEEA-KNRAEQWNV--NYVETSAKT 160 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGG-CCSCHHHH-HHHHHHHTC--EEEEECTTT
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCcccc-ccccHHHH-HHHHHHhCC--eEEEEeCCC
Confidence 999999999999999999875 888887654 38999999999999765 34444433 445555552 899999999
Q ss_pred CCCchhHHHHHHHHHh
Q 008219 165 QIQVPEVFYYAQKAVL 180 (573)
Q Consensus 165 ~~gi~~l~~~i~~~~~ 180 (573)
|.|++++|+++.+.+.
T Consensus 161 g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 161 RANVDKVFFDLMREIR 176 (206)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998764
No 20
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.92 E-value=1.3e-24 Score=200.80 Aligned_cols=165 Identities=19% Similarity=0.293 Sum_probs=133.3
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 11 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
....+.+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++.+......+++.+|+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 3456789999999999999999999999888777665444332 344455666778899999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHh--cCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCC-CCC
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRR--LEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL-KQI 166 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~--~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~ 166 (573)
+++|||++++.+++.+.. |+..+.. ...++|+++|+||+|+... +.+..++ ...+...++ .++++|||+ +|.
T Consensus 93 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~v~~~~-~~~~~~~~~--~~~~~~Sa~~~~~ 167 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHL-RKVTRDQ-GKEMATKYN--IPYIETSAKDPPL 167 (183)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTT-CCSCHHH-HHHHHHHHT--CCEEEEBCSSSCB
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhc-cCcCHHH-HHHHHHHhC--CeEEEeccCCCCC
Confidence 999999999999999885 8777754 2358999999999999765 4454443 456666666 389999999 999
Q ss_pred CchhHHHHHHHHHh
Q 008219 167 QVPEVFYYAQKAVL 180 (573)
Q Consensus 167 gi~~l~~~i~~~~~ 180 (573)
|++++|+.+.+.+.
T Consensus 168 ~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 168 NVDKTFHDLVRVIR 181 (183)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988653
No 21
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.92 E-value=1.2e-24 Score=199.93 Aligned_cols=164 Identities=23% Similarity=0.331 Sum_probs=133.0
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
.....+||+|+|++|||||||+++|++..+...++++.+... ....+....+.+.+|||||++.+......+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 345689999999999999999999999988776665544332 334455567889999999999998889999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCc
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (573)
+++|||++++.+++.+.. |+..+.... .++|+++|+||+|+... +.+..++ ...+...++ .++++|||++|.|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSS-WLTDARNLTNPNTVIILIGNKADLEAQ-RDVTYEE-AKQFAEENG--LLFLEASAKTGENV 165 (179)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG-CCSCHHH-HHHHHHHTT--CEEEECCTTTCTTH
T ss_pred EEEEEeCcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECcccccc-cccCHHH-HHHHHHHcC--CEEEEEeCCCCCCH
Confidence 999999999999998874 888887654 68999999999999754 3344333 345555555 28999999999999
Q ss_pred hhHHHHHHHHHh
Q 008219 169 PEVFYYAQKAVL 180 (573)
Q Consensus 169 ~~l~~~i~~~~~ 180 (573)
+++|+++.+.+.
T Consensus 166 ~~l~~~l~~~i~ 177 (179)
T 1z0f_A 166 EDAFLEAAKKIY 177 (179)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999988653
No 22
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.92 E-value=1.1e-24 Score=204.62 Aligned_cols=165 Identities=25% Similarity=0.411 Sum_probs=132.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
...+||+|+|++|||||||+++|++..+...+.++.+. ......+....+.+.||||||++.+......+++.+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 45789999999999999999999998887665443332 22334455566889999999999998888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------ccccHHHHHHHHHHHhcccCeEEEec
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIECS 161 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (573)
|||++++.++..+...|...++...+++|+++|+||+|+.... +.+..+ ....+...++. .++++||
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~-~~~~~~S 180 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSE-EGRDMANRISA-FGYLECS 180 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHH-HHHHHHHHTTC-SEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHH-HHHHHHHhCCC-cEEEEee
Confidence 9999999999999667999998877789999999999997641 112222 23445555553 2799999
Q ss_pred CCCCCCchhHHHHHHHHHh
Q 008219 162 ALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 162 a~~~~gi~~l~~~i~~~~~ 180 (573)
|++|.|++++++.+.+.++
T Consensus 181 A~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999988754
No 23
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.92 E-value=1.1e-24 Score=197.80 Aligned_cols=162 Identities=22% Similarity=0.341 Sum_probs=128.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
++.+||+++|++|||||||+++|++..+...++++.+... ....+....+.+.+|||||++.+......+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 4579999999999999999999999888776655444332 334455666889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 93 TYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+..++ ...+...++. +++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~~--~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK-RQVSVEE-AKNRADQWNV--NYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGG-CCSCHHH-HHHHHHHHTC--EEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECcccccc-CccCHHH-HHHHHHHcCC--eEEEeCCCCCCCHHH
Confidence 999999999999875 887776643 38999999999999764 3344443 3445555552 899999999999999
Q ss_pred HHHHHHHHHh
Q 008219 171 VFYYAQKAVL 180 (573)
Q Consensus 171 l~~~i~~~~~ 180 (573)
+++++.+.+.
T Consensus 157 l~~~l~~~i~ 166 (168)
T 1u8z_A 157 VFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 24
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.92 E-value=8.5e-25 Score=201.65 Aligned_cols=166 Identities=19% Similarity=0.228 Sum_probs=133.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
..+.+||+|+|++|||||||+++|+++.+...++++.+.+. ....+....+.+.+|||||++.+......+++.+|+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 34679999999999999999999998888777766555443 33444455688999999999999888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
+|||++++.+++.+.. |+..+.... .++|+++|+||+|+... +.+..++ ...+...++. +++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~~--~~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHME-RVISYEE-GKALAESWNA--AFLESSAKENQTAV 157 (181)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTT-CCSCHHH-HHHHHHHTTC--EEEECCTTSHHHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhc-ceecHHH-HHHHHHHhCC--cEEEEecCCCCCHH
Confidence 9999999999999985 887775532 47999999999999765 4444443 4556666653 89999999999999
Q ss_pred hHHHHHHHHHhCCC
Q 008219 170 EVFYYAQKAVLHPT 183 (573)
Q Consensus 170 ~l~~~i~~~~~~~~ 183 (573)
++|+.+.+.+....
T Consensus 158 ~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 158 DVFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999876543
No 25
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=4.4e-25 Score=207.45 Aligned_cols=170 Identities=19% Similarity=0.219 Sum_probs=130.4
Q ss_pred CCCCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eecccccCCceeEEEEeCCCCccchhhhHhhhcc
Q 008219 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRR 86 (573)
Q Consensus 8 ~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (573)
.+++...+.+||+|+|++|||||||+++|++..+...+.++.+.. .....+....+.+.||||||++.+......+++.
T Consensus 16 ~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 95 (201)
T 3oes_A 16 FQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIG 95 (201)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTT
T ss_pred CCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhc
Confidence 345556778999999999999999999999998877765544332 2344455667889999999999999889999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCC
Q 008219 87 ADAVVLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (573)
Q Consensus 87 ad~il~v~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (573)
+|++++|||++++.+++.+.. |+..+... ..++|+++|+||+|+... +.+...+ ...+...++. ++++|||++
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~v~~~~-~~~~~~~~~~--~~~~~Sa~~ 170 (201)
T 3oes_A 96 VHGYVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKADLSPE-REVQAVE-GKKLAESWGA--TFMESSARE 170 (201)
T ss_dssp CCEEEEEEETTCHHHHHHHHH-HHHHHHC-----CCCEEEEEECTTCGGG-CCSCHHH-HHHHHHHHTC--EEEECCTTC
T ss_pred CCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccCccc-cccCHHH-HHHHHHHhCC--eEEEEeCCC
Confidence 999999999999999999985 88888664 247899999999999765 3444433 3556666653 899999999
Q ss_pred CCCchhHHHHHHHHHhCC
Q 008219 165 QIQVPEVFYYAQKAVLHP 182 (573)
Q Consensus 165 ~~gi~~l~~~i~~~~~~~ 182 (573)
|.|++++|+.+.+.+...
T Consensus 171 ~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 171 NQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999987543
No 26
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.92 E-value=7.3e-25 Score=198.92 Aligned_cols=159 Identities=22% Similarity=0.222 Sum_probs=109.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~ 94 (573)
.+||+++|++|||||||+++|++..+....+. .+++. ....+....+.+.+|||||++.+......+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCc-cccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 58999999999999999999997765544332 22333 44556677889999999999999888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHH
Q 008219 95 ACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 95 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (573)
|++++.+++.+.. |+..+... ..++|+++|+||+|+... +.+..++. ..+...++ .++++|||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~-~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 81 SVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRS-REVSVDEG-RACAVVFD--CKFIETSAALHHNVQALF 155 (166)
T ss_dssp ETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSS-CCSCHHHH-HHHHHHTT--CEEEECBGGGTBSHHHHH
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccccccc-cccCHHHH-HHHHHHhC--CcEEEeccCCCCCHHHHH
Confidence 9999999999886 77777654 358999999999999865 44444433 45555555 389999999999999999
Q ss_pred HHHHHHHh
Q 008219 173 YYAQKAVL 180 (573)
Q Consensus 173 ~~i~~~~~ 180 (573)
+.+.+.+.
T Consensus 156 ~~l~~~~~ 163 (166)
T 3q72_A 156 EGVVRQIR 163 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988653
No 27
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.92 E-value=4.9e-25 Score=207.66 Aligned_cols=165 Identities=24% Similarity=0.408 Sum_probs=131.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
.++.+||+++|++|||||||+++|+++.+...+.++.... .....+....+.+.||||||++.+......+++.+|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 3568999999999999999999999988877765544322 244455666788889999999999998999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-----------cccHHHHHHHHHHHhcccCeEEEe
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-----------QVSLEQVMMPIMQQFREIETCIEC 160 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 160 (573)
+|||++++.+++.+...|+..++...+++|+++|+||+|+..... .+..+ ....+...++. .++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~-~~~~~~ 184 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYP-QGLAMAKEIGA-VKYLEC 184 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHH-HHHHHHHHTTC-SEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHH-HHHHHHHhcCC-cEEEEe
Confidence 999999999999998679999988778899999999999876521 12222 23455555553 379999
Q ss_pred cCCCCCCchhHHHHHHHHH
Q 008219 161 SALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 161 Sa~~~~gi~~l~~~i~~~~ 179 (573)
||++|.|++++|+++.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998753
No 28
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.92 E-value=1.8e-24 Score=197.97 Aligned_cols=162 Identities=24% Similarity=0.236 Sum_probs=118.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eecccccCCceeEEEEeCCCCcc--chhhhHhhhccCCEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVE--DRGKLGEELRRADAV 90 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~~~~~~ad~i 90 (573)
+..+||+|+|++|||||||+++|++..+...++++..+. .....+....+.+.+|||||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 357999999999999999999999988766554432222 23444555667899999999887 455667889999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCc
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (573)
++|||++++.+++.+.. |...+... ..++|+++|+||+|+... +.+..++. ..+...++ .++++|||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~-~~v~~~~~-~~~~~~~~--~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARC-REVSVEEG-RACAVVFD--CKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTT-CCSCHHHH-HHHHHHHT--SEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhccc-cccCHHHH-HHHHHHcC--CeEEEEecCCCCCH
Confidence 99999999999999885 88877764 248999999999999865 44544433 34555555 28999999999999
Q ss_pred hhHHHHHHHHHh
Q 008219 169 PEVFYYAQKAVL 180 (573)
Q Consensus 169 ~~l~~~i~~~~~ 180 (573)
+++|+++.+.+.
T Consensus 157 ~~l~~~l~~~~~ 168 (175)
T 2nzj_A 157 AELFEGVVRQLR 168 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 29
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.92 E-value=1.3e-24 Score=201.28 Aligned_cols=165 Identities=22% Similarity=0.338 Sum_probs=130.7
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 11 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
...++.+||+|+|++|||||||+++|++..+...++++..... ....+....+.+.||||||++.+......+++.+|+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 3456789999999999999999999999888777665444332 334455556789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCC
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (573)
+++|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+..++ ...+...++. ++++|||++|.|
T Consensus 93 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~~--~~~~~Sa~~~~g 167 (187)
T 2a9k_A 93 FLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK-RQVSVEE-AKNRAEQWNV--NYVETSAKTRAN 167 (187)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGG-CCSCHHH-HHHHHHHTTC--EEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-CccCHHH-HHHHHHHcCC--eEEEeCCCCCCC
Confidence 999999999999998875 877776643 38999999999999764 3344433 3445555552 899999999999
Q ss_pred chhHHHHHHHHHh
Q 008219 168 VPEVFYYAQKAVL 180 (573)
Q Consensus 168 i~~l~~~i~~~~~ 180 (573)
++++++++.+.+.
T Consensus 168 i~~l~~~l~~~i~ 180 (187)
T 2a9k_A 168 VDKVFFDLMREIR 180 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 30
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.4e-24 Score=204.94 Aligned_cols=164 Identities=25% Similarity=0.267 Sum_probs=123.6
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCe-eecccccCCceeEEEEeCCCCcc-chhhhHhhhccC
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADT--FPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVE-DRGKLGEELRRA 87 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~a 87 (573)
.....+||+|+|++|||||||+|+|++.. +...++++..++ ...+.+++..+.+.+|||+|++. +......+++.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 34567999999999999999999999744 455555443333 24445556667889999999876 444556778899
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCC
Q 008219 88 DAVVLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (573)
Q Consensus 88 d~il~v~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (573)
|++++|||++++.+|+.+.. |...+... ..++|++||+||+|+... +.+..++. ..++..++ .++++|||++|
T Consensus 113 ~~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~-r~v~~~e~-~~~a~~~~--~~~~e~SAk~g 187 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRC-REVSVSEG-RACAVVFD--CKFIETSAAVQ 187 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGG-CCSCHHHH-HHHHHHHT--CEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcC-ceEeHHHH-HHHHHHcC--CEEEEEeCCCC
Confidence 99999999999999999885 88777653 247999999999999764 44554433 34445554 28999999999
Q ss_pred CCchhHHHHHHHHHh
Q 008219 166 IQVPEVFYYAQKAVL 180 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~ 180 (573)
.||+++|+.+.+.+.
T Consensus 188 ~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 188 HNVKELFEGIVRQVR 202 (211)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988653
No 31
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.92 E-value=2.7e-24 Score=199.94 Aligned_cols=163 Identities=22% Similarity=0.280 Sum_probs=132.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
....+||+|+|++|||||||+++|++..+...+.++.+.+. ....+....+.+.+|||||++.+......+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 34579999999999999999999999988766554444433 3334455678999999999999988899999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
++|||++++.+++.+.. |+..+.... .++|+++|+||+|+... +.+..+ ....+...++. ++++|||++|.|++
T Consensus 99 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~g~gi~ 173 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQD-WATQIKTYSWDNAQVILVGNKCDLEDE-RVVPAE-DGRRLADDLGF--EFFEASAKENINVK 173 (189)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG-CCSCHH-HHHHHHHHHTC--EEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccccc-cCCCHH-HHHHHHHHcCC--eEEEEECCCCCCHH
Confidence 99999999999998875 888887754 58999999999999764 333333 34556666653 89999999999999
Q ss_pred hHHHHHHHHHh
Q 008219 170 EVFYYAQKAVL 180 (573)
Q Consensus 170 ~l~~~i~~~~~ 180 (573)
++++++.+.+.
T Consensus 174 ~l~~~l~~~i~ 184 (189)
T 2gf9_A 174 QVFERLVDVIC 184 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 32
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.92 E-value=7.5e-25 Score=208.05 Aligned_cols=167 Identities=28% Similarity=0.438 Sum_probs=115.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
..+.+||+|+|++|||||||+++|+++.+...+.++.... .....+....+.+.||||||++.+......+++.+|+++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3567999999999999999999999988766655544332 234455566778999999999999888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------ccccHHHHHHHHHHHhcccCeEEEe
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIEC 160 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (573)
+|||++++.+++.+...|+..++...+++|+++|+||+|+.... +.+..+ ....+...++. .++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~-~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYH-RGQEMARSVGA-VAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHH-HHHHHHHHTTC-SEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHH-HHHHHHHhcCC-CEEEEe
Confidence 99999999999999767999998877789999999999997652 122222 23455555553 389999
Q ss_pred cCCCCCCchhHHHHHHHHHhC
Q 008219 161 SALKQIQVPEVFYYAQKAVLH 181 (573)
Q Consensus 161 Sa~~~~gi~~l~~~i~~~~~~ 181 (573)
||++|.|++++|+.+.+.+..
T Consensus 189 SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999987653
No 33
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.8e-24 Score=201.88 Aligned_cols=165 Identities=24% Similarity=0.317 Sum_probs=133.1
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCC
Q 008219 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (573)
Q Consensus 11 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 88 (573)
....+.+||+|+|++|||||||+++|++..+...+.++.+.+. ....+....+.+.||||||++.+......+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 89 (195)
T 1x3s_A 10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ 89 (195)
T ss_dssp TTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 3445689999999999999999999999888766555444332 33445566789999999999999888999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCC
Q 008219 89 AVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (573)
Q Consensus 89 ~il~v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (573)
++++|||++++.++..+.. |+..+.... .++|+++|+||+|+... .+..++ ...+....+ .++++|||++|.
T Consensus 90 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~ 163 (195)
T 1x3s_A 90 GVILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKENR--EVDRNE-GLKFARKHS--MLFIEASAKTCD 163 (195)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSSSC--CSCHHH-HHHHHHHTT--CEEEECCTTTCT
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCcEEEEEECCcCccc--ccCHHH-HHHHHHHcC--CEEEEecCCCCC
Confidence 9999999999999998884 988887754 57999999999999543 333333 344555554 289999999999
Q ss_pred CchhHHHHHHHHHhC
Q 008219 167 QVPEVFYYAQKAVLH 181 (573)
Q Consensus 167 gi~~l~~~i~~~~~~ 181 (573)
|++++++++.+.+..
T Consensus 164 gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 164 GVQCAFEELVEKIIQ 178 (195)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998754
No 34
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=199.80 Aligned_cols=163 Identities=24% Similarity=0.311 Sum_probs=129.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
....+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++.+......+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999887655444333222 3333445558899999999999988889999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
++|||++++.++..+.. |+..+....+++|+++|+||+|+... +.+...+ ...+...++. ++++|||++|.|+++
T Consensus 86 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~~--~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKR-WLHEINQNCDDVCRILVGNKNDDPER-KVVETED-AYKFAGQMGI--QLFETSAKENVNVEE 160 (181)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHCTTSEEEEEEECTTCGGG-CCSCHHH-HHHHHHHHTC--CEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECCCCchh-cccCHHH-HHHHHHHcCC--eEEEEECCCCCCHHH
Confidence 99999999999999875 99998887778999999999998765 3333333 3455555553 899999999999999
Q ss_pred HHHHHHHHHh
Q 008219 171 VFYYAQKAVL 180 (573)
Q Consensus 171 l~~~i~~~~~ 180 (573)
+++++.+.+.
T Consensus 161 l~~~l~~~~~ 170 (181)
T 3tw8_B 161 MFNCITELVL 170 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 35
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=204.03 Aligned_cols=164 Identities=19% Similarity=0.310 Sum_probs=127.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-e-eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-T-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
....+||+|+|++|||||||+++|++..+...+.++.+. . .....+....+.+.||||||++.+...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 355799999999999999999999998876655444332 2 23344445568999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
|+|||++++.+++.+.. |+..+.... .++|++||+||+|+... +.+..++ ...++..++. .++++|||++|.||+
T Consensus 106 ilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~NK~Dl~~~-~~v~~~~-~~~~~~~~~~-~~~~~~SA~~g~gi~ 181 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPH-WIEDVRKYAGSNIVQLLIGNKSDLSEL-REVSLAE-AQSLAEHYDI-LCAIETSAKDSSNVE 181 (201)
T ss_dssp EEEEETTBHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG-CCSCHHH-HHHHHHHTTC-SEEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCccccc-cccCHHH-HHHHHHHcCC-CEEEEEeCCCCCCHH
Confidence 99999999999999884 988887754 68999999999999764 3444443 3455565552 379999999999999
Q ss_pred hHHHHHHHHHh
Q 008219 170 EVFYYAQKAVL 180 (573)
Q Consensus 170 ~l~~~i~~~~~ 180 (573)
++|+++.+.+.
T Consensus 182 ~l~~~l~~~i~ 192 (201)
T 2hup_A 182 EAFLRVATELI 192 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 36
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.92 E-value=2.2e-24 Score=201.67 Aligned_cols=164 Identities=23% Similarity=0.245 Sum_probs=126.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCe-eecccccCCceeEEEEeCCCCccchh-hhHhhhccCCE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPA-NVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRG-KLGEELRRADA 89 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~ 89 (573)
....+||+|+|++|||||||+++|++..+.. ..+++...+ ...+.++...+.+.+|||+|++.+.. ....+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 3567999999999999999999998654322 233332222 23445556678899999999987764 66788999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCC
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (573)
+++|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+..++. ..++..++ .++++|||++|.|
T Consensus 100 ~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~v~~~~~-~~~a~~~~--~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARS-REVSLEEG-RHLAGTLS--CKHIETSAALHHN 174 (195)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTT-CCSCHHHH-HHHHHHTT--CEEEEEBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhcccc-CCcCHHHH-HHHHHHhC--CEEEEEcCCCCCC
Confidence 999999999999999985 888887643 48999999999999865 44554443 45556555 2899999999999
Q ss_pred chhHHHHHHHHHhC
Q 008219 168 VPEVFYYAQKAVLH 181 (573)
Q Consensus 168 i~~l~~~i~~~~~~ 181 (573)
++++|+.+++.+..
T Consensus 175 v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 175 TRELFEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
No 37
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.92 E-value=2.5e-24 Score=196.04 Aligned_cols=161 Identities=23% Similarity=0.348 Sum_probs=131.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
.+.+||+|+|++|||||||+|+|++..+...+.++.+.+. ....+....+.+.+|||||++.+......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 4579999999999999999999999987766555554433 34445566788999999999999888999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 92 LTYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
+|||++++.++..+.. |+..+... .++.|+++|+||+|+... +.+..+ ....+...++ .+++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~iilv~nK~Dl~~~-~~v~~~-~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 84 IVYDITKEETFSTLKN-WVRELRQHGPPSIVVAIAGNKCDLTDV-REVMER-DAKDYADSIH--AIFVETSAKNAININE 158 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTSEEEEEEECTTCGGG-CCSCHH-HHHHHHHHTT--CEEEECBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECCccccc-cccCHH-HHHHHHHHcC--CEEEEEeCCCCcCHHH
Confidence 9999999999998874 88888775 468999999999999764 334333 3345555555 3899999999999999
Q ss_pred HHHHHHHHH
Q 008219 171 VFYYAQKAV 179 (573)
Q Consensus 171 l~~~i~~~~ 179 (573)
+++.+.+.+
T Consensus 159 l~~~i~~~i 167 (170)
T 1z0j_A 159 LFIEISRRI 167 (170)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998764
No 38
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.92 E-value=3.9e-24 Score=197.06 Aligned_cols=163 Identities=21% Similarity=0.287 Sum_probs=130.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
....+||+|+|++|||||||+++|++..+.....++.+... ....+....+.+.+|||||++.+......+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999887766544433322 3344455578999999999999999899999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
++|||++++.+++.+.. |+..+.... +++|+++|+||+|+... +.+..++ ...+....+ .++++|||++|.|++
T Consensus 89 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~i~v~nK~Dl~~~-~~~~~~~-~~~~~~~~~--~~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 89 IIVFDVTNQASFERAKK-WVQELQAQGNPNMVMALAGNKSDLLDA-RKVTAED-AQTYAQENG--LFFMETSAKTATNVK 163 (181)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTT-CCSCHHH-HHHHHHHTT--CEEEECCSSSCTTHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCccccc-ccCCHHH-HHHHHHHcC--CEEEEEECCCCCCHH
Confidence 99999999999998874 888887654 58999999999999765 3344433 344555554 289999999999999
Q ss_pred hHHHHHHHHHh
Q 008219 170 EVFYYAQKAVL 180 (573)
Q Consensus 170 ~l~~~i~~~~~ 180 (573)
++++++.+.+.
T Consensus 164 ~l~~~l~~~~~ 174 (181)
T 2efe_B 164 EIFYEIARRLP 174 (181)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 39
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.92 E-value=2e-24 Score=196.29 Aligned_cols=162 Identities=22% Similarity=0.315 Sum_probs=130.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
...+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++.+......+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 4579999999999999999999999887766554443322 33444455788999999999988888899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
+|||++++.+++.+.. |+..+.....+.|+++|+||+|+... +.+..++ ...+...++. +++++||++|.|++++
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~piilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~~--~~~~~Sa~~~~~i~~l 157 (168)
T 1z2a_A 83 LVFSTTDRESFEAISS-WREKVVAEVGDIPTALVQNKIDLLDD-SCIKNEE-AEGLAKRLKL--RFYRTSVKEDLNVSEV 157 (168)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHHCSCCEEEEEECGGGGGG-CSSCHHH-HHHHHHHHTC--EEEECBTTTTBSSHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccCcc-cccCHHH-HHHHHHHcCC--eEEEEecCCCCCHHHH
Confidence 9999999999998885 88888765568999999999998764 3333333 3455566653 8999999999999999
Q ss_pred HHHHHHHHh
Q 008219 172 FYYAQKAVL 180 (573)
Q Consensus 172 ~~~i~~~~~ 180 (573)
++++.+.+.
T Consensus 158 ~~~l~~~~~ 166 (168)
T 1z2a_A 158 FKYLAEKHL 166 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
No 40
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.92 E-value=2.4e-24 Score=196.05 Aligned_cols=161 Identities=21% Similarity=0.287 Sum_probs=129.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
++.+||+++|++|||||||+++|+++.+...+.++.+.+. ....+....+.+.+|||||++.+......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 4679999999999999999999999887766555444333 34445566789999999999999888999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 92 LTYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
+|||++++.++..+.. |+..+... .+++|+++|+||+|+... +.+..++. ..+....+ .+++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~Dl~~~-~~~~~~~~-~~~~~~~~--~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 84 VVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLANK-RAVDFQEA-QSYADDNS--LLFMETSAKTSMNVNE 158 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG-CCSCHHHH-HHHHHHTT--CEEEECCTTTCTTHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCccc-cccCHHHH-HHHHHHcC--CeEEEEeCCCCCCHHH
Confidence 9999999999998885 88777664 468999999999998754 33444333 44555554 2899999999999999
Q ss_pred HHHHHHHHH
Q 008219 171 VFYYAQKAV 179 (573)
Q Consensus 171 l~~~i~~~~ 179 (573)
+++++.+.+
T Consensus 159 l~~~i~~~~ 167 (170)
T 1r2q_A 159 IFMAIAKKL 167 (170)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHHH
Confidence 999998754
No 41
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=202.79 Aligned_cols=165 Identities=22% Similarity=0.367 Sum_probs=126.0
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
.....+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++.+......+++.+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 345679999999999999999999999887666544443322 333444556889999999999998889999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCc
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (573)
+|+|||++++.+++.+.. |+..++... .++|+++|+||+|+... +.+..++ ...+...+... ++++|||++|.|+
T Consensus 102 iilV~D~~~~~s~~~~~~-~~~~i~~~~~~~~piilV~NK~Dl~~~-~~v~~~~-~~~~~~~~~~~-~~~~~SA~~g~gi 177 (192)
T 2il1_A 102 IILVYDITKKETFDDLPK-WMKMIDKYASEDAELLLVGNKLDCETD-REITRQQ-GEKFAQQITGM-RFCEASAKDNFNV 177 (192)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG-CCSCHHH-HHHHHHTSTTC-EEEECBTTTTBSH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECcccccc-cccCHHH-HHHHHHhcCCC-eEEEEeCCCCCCH
Confidence 999999999999999874 888887754 47999999999999764 3444433 34555554333 8999999999999
Q ss_pred hhHHHHHHHHHh
Q 008219 169 PEVFYYAQKAVL 180 (573)
Q Consensus 169 ~~l~~~i~~~~~ 180 (573)
+++|+.+.+.+.
T Consensus 178 ~~l~~~l~~~i~ 189 (192)
T 2il1_A 178 DEIFLKLVDDIL 189 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 42
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.92 E-value=1.8e-24 Score=196.15 Aligned_cols=160 Identities=24% Similarity=0.350 Sum_probs=128.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
+.+||+++|++|||||||+++|+++.+...+.++.... .....+....+.+.+|||||++.+......+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 57999999999999999999999988876655544332 24445556667899999999999999899999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 94 YACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
||++++.+++.+.. |...+.... .++|+++|+||+|+... +.+...+ ...+...++. ++++|||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~~--~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESE-REVSSSE-GRALAEEWGC--PFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGG-CCSCHHH-HHHHHHHHTS--CEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCccccc-ccCCHHH-HHHHHHHhCC--CEEEecCCCCcCHHHH
Confidence 99999999998885 666665432 48999999999998754 3344333 3455555552 8999999999999999
Q ss_pred HHHHHHHH
Q 008219 172 FYYAQKAV 179 (573)
Q Consensus 172 ~~~i~~~~ 179 (573)
++++.+.+
T Consensus 157 ~~~l~~~~ 164 (167)
T 1kao_A 157 FAEIVRQM 164 (167)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 43
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.92 E-value=3e-24 Score=199.96 Aligned_cols=164 Identities=22% Similarity=0.321 Sum_probs=129.3
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
.....+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.||||||++.+......+++.+|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 345689999999999999999999999887766444333322 334445556899999999999988888999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCc
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (573)
+++|||++++.+++.+.. |+..+... ..++|+++|+||+|+... +.+..++ ...+...++. ++++|||++|.|+
T Consensus 97 ii~v~d~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~-~~v~~~~-~~~~~~~~~~--~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTS-WLEDARQHSSSNMVIMLIGNKSDLESR-RDVKREE-GEAFAREHGL--IFMETSAKTACNV 171 (191)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG-CCSCHHH-HHHHHHHHTC--EEEEECTTTCTTH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccCCc-cccCHHH-HHHHHHHcCC--EEEEEeCCCCCCH
Confidence 999999999999999885 88888764 358999999999999764 3344333 3455555553 8999999999999
Q ss_pred hhHHHHHHHHHh
Q 008219 169 PEVFYYAQKAVL 180 (573)
Q Consensus 169 ~~l~~~i~~~~~ 180 (573)
+++|+.+.+.+.
T Consensus 172 ~~l~~~l~~~i~ 183 (191)
T 2a5j_A 172 EEAFINTAKEIY 183 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 44
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.92 E-value=3.5e-24 Score=198.70 Aligned_cols=161 Identities=20% Similarity=0.368 Sum_probs=128.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
.+.+||+|+|++|||||||+|+|++..+...++++..... ....+.+..+.+.+|||||++.+......+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 3579999999999999999999999988777666543322 344455666789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 93 TYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
|||++++.++..+.. |+..+... ..++|+++|+||+|+... ... .+....+...++. ++++|||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~-~~~~~~~~~~~~~--~~~~~Sa~~g~gi~~ 155 (189)
T 4dsu_A 82 VFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLPSR--TVD-TKQAQDLARSYGI--PFIETSAKTRQGVDD 155 (189)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSSSC--SSC-HHHHHHHHHHHTC--CEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCccc--ccC-HHHHHHHHHHcCC--eEEEEeCCCCCCHHH
Confidence 999999999999885 87777663 258999999999999753 222 3344566666653 899999999999999
Q ss_pred HHHHHHHHHh
Q 008219 171 VFYYAQKAVL 180 (573)
Q Consensus 171 l~~~i~~~~~ 180 (573)
+++++.+.+.
T Consensus 156 l~~~l~~~~~ 165 (189)
T 4dsu_A 156 AFYTLVREIR 165 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 45
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.7e-24 Score=203.06 Aligned_cols=168 Identities=24% Similarity=0.411 Sum_probs=130.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
+..+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.||||||++.+......+++.+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 4578999999999999999999999888766555444332 334445556889999999999998888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------ccccHHHHHHHHHHHhcccCeEEEec
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIECS 161 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (573)
|||++++.++..+...|+..++...+++|+++|+||+|+.... +.+..+ ....+...++. .++++||
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~-~~~~~~S 180 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTD-DGRAMAVRIQA-YDYLECS 180 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHH-HHHHHHHHTTC-SEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHH-HHHHHHHhcCC-CEEEEee
Confidence 9999999999999667999998877789999999999997541 112222 22344455543 2799999
Q ss_pred CCCCCCchhHHHHHHHHHhCCC
Q 008219 162 ALKQIQVPEVFYYAQKAVLHPT 183 (573)
Q Consensus 162 a~~~~gi~~l~~~i~~~~~~~~ 183 (573)
|++|.|++++++.+.+.++.+.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999877543
No 46
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.92 E-value=2.2e-24 Score=196.48 Aligned_cols=162 Identities=21% Similarity=0.321 Sum_probs=124.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
...+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++.+......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 4579999999999999999999999887665444444332 34445566788999999999988888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
+|+|++++.+++.+.. |+..++... .++|+++|+||+|+... +.+..++ ...+...++ .+++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 84 LVYDITDEDSFQKVKN-WVKELRKMLGNEICLCIVGNKIDLEKE-RHVSIQE-AESYAESVG--AKHYHTSAKQNKGIEE 158 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHHGGGSEEEEEEECGGGGGG-CCSCHHH-HHHHHHHTT--CEEEEEBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECcccccc-cccCHHH-HHHHHHHcC--CeEEEecCCCCCCHHH
Confidence 9999999999998884 888876643 47999999999999764 3444443 345566665 2899999999999999
Q ss_pred HHHHHHHHHh
Q 008219 171 VFYYAQKAVL 180 (573)
Q Consensus 171 l~~~i~~~~~ 180 (573)
+++++.+.+.
T Consensus 159 l~~~l~~~~~ 168 (170)
T 1z08_A 159 LFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 47
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.92 E-value=1.9e-24 Score=196.78 Aligned_cols=160 Identities=23% Similarity=0.237 Sum_probs=117.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeecccccCCceeEEEEeCCCCccchh-hhHhhhccCCEEEE
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN--VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG-KLGEELRRADAVVL 92 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~il~ 92 (573)
.+||+++|++|||||||+++|++..+... .+++.........+....+.+.+|||||++.+.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 48999999999999999999997665443 2222222334455666678899999999988776 56677999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 93 TYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
|||++++.+++.+.. |+..+.... .++|+++|+||+|+... +.+..++ ...+...++. ++++|||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~~--~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARS-REVSLEE-GRHLAGTLSC--KHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGG-CCSCHHH-HHHHHHHTTC--EEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhc-ccCCHHH-HHHHHHHcCC--cEEEecCccCCCHHH
Confidence 999999999999985 777776654 38999999999999754 4444443 3556666653 899999999999999
Q ss_pred HHHHHHHHHh
Q 008219 171 VFYYAQKAVL 180 (573)
Q Consensus 171 l~~~i~~~~~ 180 (573)
+|+.+.+.+.
T Consensus 157 l~~~l~~~i~ 166 (169)
T 3q85_A 157 LFEGAVRQIR 166 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 48
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.92 E-value=4e-24 Score=196.17 Aligned_cols=164 Identities=23% Similarity=0.324 Sum_probs=127.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
....+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++.+......+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 34679999999999999999999999887666444443322 3334445567899999999999998889999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCC
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE-----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (573)
++|||++++.++..+.. |+..+.... .++|+++|+||+|+.. +.+..++. ..+....... ++++|||++|
T Consensus 84 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~--~~~~~~~~-~~~~~~~~~~-~~~~~Sa~~~ 158 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDISE--RQVSTEEA-QAWCRDNGDY-PYFETSAKDA 158 (177)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCSS--CSSCHHHH-HHHHHHTTCC-CEEECCTTTC
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHHccccccCCCcEEEEEECCcccc--cccCHHHH-HHHHHhcCCc-eEEEEeCCCC
Confidence 99999999999998874 888776532 5789999999999973 33444433 3444433333 8999999999
Q ss_pred CCchhHHHHHHHHHhC
Q 008219 166 IQVPEVFYYAQKAVLH 181 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~~ 181 (573)
.|++++|+.+.+.+..
T Consensus 159 ~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 159 TNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987654
No 49
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=3e-24 Score=201.67 Aligned_cols=162 Identities=24% Similarity=0.334 Sum_probs=129.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
...+||+|+|++|||||||+++|+++.+...+.++.+... ....+....+.+.||||||++.+......+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999887665544433222 33444555678999999999999888899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
+|||++++.+++.+.. |+..+.... .++|+++|+||+|+... +.+..++. ..+....+ .++++|||++|.|+++
T Consensus 104 ~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~NK~Dl~~~-~~v~~~~~-~~~~~~~~--~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 104 LTYDITCEESFRCLPE-WLREIEQYASNKVITVLVGNKIDLAER-REVSQQRA-EEFSEAQD--MYYLETSAKESDNVEK 178 (201)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG-CSSCHHHH-HHHHHHHT--CCEEECCTTTCTTHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCccc-cccCHHHH-HHHHHHcC--CEEEEEeCCCCCCHHH
Confidence 9999999999998875 988887754 57999999999999754 33444433 44555554 2899999999999999
Q ss_pred HHHHHHHHHh
Q 008219 171 VFYYAQKAVL 180 (573)
Q Consensus 171 l~~~i~~~~~ 180 (573)
+|+.+.+.+.
T Consensus 179 l~~~l~~~i~ 188 (201)
T 2ew1_A 179 LFLDLACRLI 188 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 50
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.92 E-value=6.2e-24 Score=199.79 Aligned_cols=162 Identities=22% Similarity=0.280 Sum_probs=132.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
...+||+|+|++|||||||+++|++..+...+.++.+.+. ....+....+.+.||||||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 4579999999999999999999999988766555444333 33444556789999999999999888999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
+|||++++.+++.+.. |+..+.... .++|+++|+||+|+... +.+..+ ....+...++. ++++|||++|.|+++
T Consensus 86 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~gi~~ 160 (203)
T 1zbd_A 86 LMYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDMEDE-RVVSSE-RGRQLADHLGF--EFFEASAKDNINVKQ 160 (203)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCSSCEEEEEEECTTCTTS-CCSCHH-HHHHHHHHHTC--EEEECBTTTTBSSHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccCcc-cccCHH-HHHHHHHHCCC--eEEEEECCCCCCHHH
Confidence 9999999999998885 888887754 58999999999999765 334433 34556666653 899999999999999
Q ss_pred HHHHHHHHHh
Q 008219 171 VFYYAQKAVL 180 (573)
Q Consensus 171 l~~~i~~~~~ 180 (573)
+|+++.+.+.
T Consensus 161 l~~~l~~~i~ 170 (203)
T 1zbd_A 161 TFERLVDVIC 170 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 51
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.7e-24 Score=200.45 Aligned_cols=162 Identities=21% Similarity=0.323 Sum_probs=132.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
.+.+||+|+|++|||||||+++|++..+...+.++.+.+. ....+....+.+.+|||||++.+......+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 5679999999999999999999999887666555555443 33445567789999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
+|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+..++ ...+...++ .++++|||++|.|+++
T Consensus 101 lV~d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~NK~Dl~~~-~~v~~~~-~~~~~~~~~--~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKK-WVKELKEHGPENIVMAIAGNKCDLSDI-REVPLKD-AKEYAESIG--AIVVETSAKNAINIEE 175 (192)
T ss_dssp EEEETTCTHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG-CCSCHHH-HHHHHHTTT--CEEEECBTTTTBSHHH
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccccc-cccCHHH-HHHHHHHcC--CEEEEEeCCCCcCHHH
Confidence 9999999999999874 888887754 57999999999999753 3344433 355556555 3899999999999999
Q ss_pred HHHHHHHHHh
Q 008219 171 VFYYAQKAVL 180 (573)
Q Consensus 171 l~~~i~~~~~ 180 (573)
+++.+.+.+.
T Consensus 176 l~~~l~~~i~ 185 (192)
T 2fg5_A 176 LFQGISRQIP 185 (192)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHHH
Confidence 9999988653
No 52
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=3.1e-24 Score=195.23 Aligned_cols=161 Identities=22% Similarity=0.320 Sum_probs=128.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
+.+||+++|++|||||||+++|+++.+...+.++.+.+. ....+....+.+.+|||||++.+......+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999887766555444332 334455567889999999999998889999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCc--ccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDEN--QQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
|+|++++.++..+.. |+..+.... ++.|+++|+||+|+.... +.+..+ ....+....+. +++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~-~~~~~~~~~~~--~~~~~Sa~~~~gi~ 157 (170)
T 1ek0_A 82 VYDVTKPQSFIKARH-WVKELHEQASKDIIIALVGNKIDXLQEGGERKVARE-EGEKLAEEKGL--LFFETSAKTGENVN 157 (170)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHH-HHHHHHHHHTC--EEEECCTTTCTTHH
T ss_pred EEecCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCccccccccCCCHH-HHHHHHHHcCC--EEEEEeCCCCCCHH
Confidence 999999999999885 888776643 689999999999987542 223333 33445555552 89999999999999
Q ss_pred hHHHHHHHHH
Q 008219 170 EVFYYAQKAV 179 (573)
Q Consensus 170 ~l~~~i~~~~ 179 (573)
++|+++.+.+
T Consensus 158 ~l~~~l~~~i 167 (170)
T 1ek0_A 158 DVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 53
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=4.2e-25 Score=205.77 Aligned_cols=163 Identities=23% Similarity=0.278 Sum_probs=132.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
....+||+|+|++|||||||+++|++..+...+.++.+.+. ....+....+.+.||||||++.+......+++.+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 34679999999999999999999999887666433333222 3445556788999999999999988899999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
++|||++++.+++.+.. |+..+.... .++|+++|+||+|+... +.+..+ ....+...++. ++++|||++|.|++
T Consensus 100 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQD-WATQIKTYSWDNAQVILVGNKCDMEEE-RVVPTE-KGQLLAEQLGF--DFFEASAKENISVR 174 (191)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG-CCSCHH-HHHHHHHHHTC--EEEECBTTTTBSHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCccc-cccCHH-HHHHHHHHcCC--eEEEEECCCCCCHH
Confidence 99999999999999885 999887754 58999999999999765 334433 33556666653 89999999999999
Q ss_pred hHHHHHHHHHh
Q 008219 170 EVFYYAQKAVL 180 (573)
Q Consensus 170 ~l~~~i~~~~~ 180 (573)
++|+.+.+.+.
T Consensus 175 ~l~~~l~~~i~ 185 (191)
T 3dz8_A 175 QAFERLVDAIC 185 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 54
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.92 E-value=6.7e-24 Score=198.19 Aligned_cols=164 Identities=20% Similarity=0.305 Sum_probs=132.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
....+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.||||||++.+......+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 35679999999999999999999999887766544433322 3334445568899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
++|||++++.+++.+.. |+..+.... .++|+++|+||+|+... +.+...+ ...+...++. ++++|||++|.|++
T Consensus 93 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~~--~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK-KVVDYTT-AKEFADSLGI--PFLETSAKNATNVE 167 (196)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCTTT-CCSCHHH-HHHHHHHTTC--CEEEECTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccccc-cccCHHH-HHHHHHHcCC--cEEEEeCCCCCCHH
Confidence 99999999999999885 888887654 57999999999999865 3344333 3556666653 89999999999999
Q ss_pred hHHHHHHHHHhC
Q 008219 170 EVFYYAQKAVLH 181 (573)
Q Consensus 170 ~l~~~i~~~~~~ 181 (573)
++|+++.+.+..
T Consensus 168 ~l~~~l~~~i~~ 179 (196)
T 3tkl_A 168 QSFMTMAAEIKK 179 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 55
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.92 E-value=1.5e-24 Score=199.18 Aligned_cols=163 Identities=21% Similarity=0.251 Sum_probs=127.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-e-eecccccC-CceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-T-RLPEDFYP-DRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
++.+||+|+|++|||||||+++|++..+...+.++.+. . .....+.. ..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 46799999999999999999999998876553333332 2 23333333 358899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC---CCCc-EEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCC
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE---VKVP-VIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~---~~~p-iilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (573)
++|||++++.+++.+.. |+..+.... .+.| +++|+||+|+... +.+..++ ...+...++. ++++|||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~~--~~~~~Sa~~~~ 158 (178)
T 2hxs_A 84 LLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALVGNKIDLEHM-RTIKPEK-HLRFCQENGF--SSHFVSAKTGD 158 (178)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHHHHTCCCEEEEEEECGGGGGG-CSSCHHH-HHHHHHHHTC--EEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHHhcccCCCCeEEEEEEccccccc-cccCHHH-HHHHHHHcCC--cEEEEeCCCCC
Confidence 99999999999998874 888886632 2455 8999999999764 3344333 3455555552 89999999999
Q ss_pred CchhHHHHHHHHHhC
Q 008219 167 QVPEVFYYAQKAVLH 181 (573)
Q Consensus 167 gi~~l~~~i~~~~~~ 181 (573)
|++++|+++.+.+..
T Consensus 159 gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 159 SVFLCFQKVAAEILG 173 (178)
T ss_dssp THHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987654
No 56
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.92 E-value=4.4e-24 Score=199.93 Aligned_cols=167 Identities=18% Similarity=0.234 Sum_probs=122.6
Q ss_pred CCCCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhcc
Q 008219 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPA-NVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRR 86 (573)
Q Consensus 8 ~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (573)
..........||+|+|++|||||||+++|++..+.. .+.++.+.... .+...++.+.||||||++.+...+..+++.
T Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (199)
T 4bas_A 9 HHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAKKFRGLWETYYDN 86 (199)
T ss_dssp -------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred ccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHhc
Confidence 344556778999999999999999999999999877 55555553332 345678899999999999999999999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHHhcC---------CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHH-h-c-cc
Q 008219 87 ADAVVLTYACDRPETLDELSTFWLPELRRLE---------VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQ-F-R-EI 154 (573)
Q Consensus 87 ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~---------~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~-~-~-~~ 154 (573)
+|++|+|||++++.++..+.. |+..+.... .++|+++|+||+|+.... ..++....+... + . ..
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~ 162 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKS-EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK---TAAELVEILDLTTLMGDHP 162 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHH-HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC---CHHHHHHHHTHHHHHTTSC
T ss_pred CCEEEEEEECCcHHHHHHHHH-HHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC---CHHHHHHHhcchhhccCCe
Confidence 999999999999999999986 665554321 279999999999998752 222221121111 1 0 11
Q ss_pred CeEEEecCCCCCCchhHHHHHHHHHh
Q 008219 155 ETCIECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 155 ~~~~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
.++++|||++|.||+++|+.+.+.+.
T Consensus 163 ~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 163 FVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred eEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 27999999999999999999998764
No 57
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.91 E-value=8.6e-24 Score=191.29 Aligned_cols=160 Identities=21% Similarity=0.382 Sum_probs=129.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
+.+||+++|++|||||||+++|++..+...+.++.... .....+....+.+.+|||||++.+......+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 46899999999999999999999988776655544332 23444555667899999999999888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 94 YACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
||++++.++..+.. |+..+.... .++|+++|+||+|+... ... .+....+...++. +++++||++|.|++++
T Consensus 82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~nK~Dl~~~--~~~-~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l 155 (166)
T 2ce2_X 82 FAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLAAR--TVE-SRQAQDLARSYGI--PYIETSAKTRQGVEDA 155 (166)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSCC--CSC-HHHHHHHHHHHTC--CEEEECTTTCTTHHHH
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEchhhhhc--ccC-HHHHHHHHHHcCC--eEEEecCCCCCCHHHH
Confidence 99999999998874 888876643 37999999999998763 222 2334556666653 8999999999999999
Q ss_pred HHHHHHHHh
Q 008219 172 FYYAQKAVL 180 (573)
Q Consensus 172 ~~~i~~~~~ 180 (573)
++++.+.+.
T Consensus 156 ~~~l~~~~~ 164 (166)
T 2ce2_X 156 FYTLVREIR 164 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988653
No 58
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.91 E-value=3.7e-24 Score=197.18 Aligned_cols=165 Identities=19% Similarity=0.300 Sum_probs=117.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eeccccc-CCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFY-PDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
..+.+||+|+|++|||||||+++|++..+...+.++.+.. .....+. ...+.+.+|||||++.+......+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4567999999999999999999999988776654444322 2333444 446789999999999988888899999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCC
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRLE-----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (573)
+++|||++++.+++.+.. |+..+.... .++|+++|+||+|+....+.+..++ ...+....... ++++|||++
T Consensus 85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~-~~~~~~~~~~~-~~~~~Sa~~ 161 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS-AQELAKSLGDI-PLFLTSAKN 161 (182)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHH-HHHHHHHTTSC-CEEEEBTTT
T ss_pred EEEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHH-HHHHHHhcCCC-eEEEEecCC
Confidence 999999999999999875 887775532 5899999999999965423333333 34455434333 899999999
Q ss_pred CCCchhHHHHHHHHHh
Q 008219 165 QIQVPEVFYYAQKAVL 180 (573)
Q Consensus 165 ~~gi~~l~~~i~~~~~ 180 (573)
|.|++++++++.+.+.
T Consensus 162 ~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 162 AINVDTAFEEIARSAL 177 (182)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988654
No 59
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.91 E-value=4.7e-24 Score=197.47 Aligned_cols=163 Identities=25% Similarity=0.304 Sum_probs=129.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
....+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++.+......+++.+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 45679999999999999999999999888766544333222 2333445557899999999999988899999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
++|||++++.++..+.. |+..+... ..++|+++|+||+|+... +.+...+. ..+....+ .++++|||++|.|++
T Consensus 87 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~-~~~~~~~~--~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 87 LLVYDITSRETYNALTN-WLTDARMLASQNIVIILCGNKKDLDAD-REVTFLEA-SRFAQENE--LMFLETSALTGENVE 161 (186)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG-CCSCHHHH-HHHHHHTT--CEEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECcccccc-cccCHHHH-HHHHHHcC--CEEEEecCCCCCCHH
Confidence 99999999999998875 88877664 368999999999999754 33444433 44555554 389999999999999
Q ss_pred hHHHHHHHHHh
Q 008219 170 EVFYYAQKAVL 180 (573)
Q Consensus 170 ~l~~~i~~~~~ 180 (573)
++|+.+.+.+.
T Consensus 162 ~l~~~l~~~~~ 172 (186)
T 2bme_A 162 EAFVQCARKIL 172 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 60
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1e-23 Score=194.00 Aligned_cols=165 Identities=21% Similarity=0.295 Sum_probs=123.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCC
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPA-NVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 88 (573)
.....+||+|+|++|||||||+++|++..+.. .+.++.+... ....+....+.+.+|||||++.+...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 34678999999999999999999999988753 3333333322 22344455678999999999999888889999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCC
Q 008219 89 AVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (573)
Q Consensus 89 ~il~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (573)
++++|+|++++.+++.+.. |+..+.... .++|+++|+||+|+... +.+..++ ...+...++. ++++|||++|.|
T Consensus 86 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~~--~~~~~Sa~~~~g 160 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQA-WLTEIHEYAQHDVALMLLGNKVDSAHE-RVVKRED-GEKLAKEYGL--PFMETSAKTGLN 160 (180)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECCSTTSC-CCSCHHH-HHHHHHHHTC--CEEECCTTTCTT
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccCcc-cccCHHH-HHHHHHHcCC--eEEEEeCCCCCC
Confidence 9999999999999998875 888887654 58999999999999865 3344333 3455555552 899999999999
Q ss_pred chhHHHHHHHHHhC
Q 008219 168 VPEVFYYAQKAVLH 181 (573)
Q Consensus 168 i~~l~~~i~~~~~~ 181 (573)
++++++++.+.+..
T Consensus 161 i~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 161 VDLAFTAIAKELKR 174 (180)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
No 61
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=4e-24 Score=200.54 Aligned_cols=166 Identities=21% Similarity=0.296 Sum_probs=123.7
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCC
Q 008219 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (573)
Q Consensus 11 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 88 (573)
...++.+||+|+|++|||||||+++|++..+...+.++.+.+. ....+....+.+.||||||++.+......+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 3446689999999999999999999999887665444433222 34455566788999999999999998999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCC-----cccccHHHHHHHHHHHhcccCeEEEecC
Q 008219 89 AVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDE-----NQQVSLEQVMMPIMQQFREIETCIECSA 162 (573)
Q Consensus 89 ~il~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (573)
++|+|||++++.++..+.. |+..++... .++|+++|+||+|+... .+.+..+ ....+...++. ++++|||
T Consensus 103 ~iilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~-~~~~~~~~~~~--~~~~~SA 178 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIRE-WVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGH-FGEKLAMTYGA--LFCETSA 178 (199)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHH-HHHHHHHHHTC--EEEECCT
T ss_pred EEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccccccccccccccCHH-HHHHHHHHcCC--eEEEeeC
Confidence 9999999999999999885 988887654 57999999999998631 1233333 33455555553 8999999
Q ss_pred CCCCCchhHHHHHHHHHh
Q 008219 163 LKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 163 ~~~~gi~~l~~~i~~~~~ 180 (573)
++|.|++++|+++.+.+.
T Consensus 179 ~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 179 KDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp TTCTTHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 62
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.91 E-value=9e-24 Score=196.76 Aligned_cols=164 Identities=15% Similarity=0.215 Sum_probs=129.6
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---ecccccCC---------ceeEEEEeCCCCccchhh
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR---LPEDFYPD---------RVPITIIDTPSSVEDRGK 79 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~i~Dt~G~~~~~~~ 79 (573)
.....+||+|+|++|||||||+++|++..+...+.++.+... ....+... .+.+.+|||||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 345679999999999999999999999887665444333222 12223333 578999999999999888
Q ss_pred hHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeE
Q 008219 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETC 157 (573)
Q Consensus 80 ~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (573)
...+++.+|++++|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+..+ ....+...++. ++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~ 161 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSENPDIVLCGNKSDLEDQ-RAVKEE-EARELAEKYGI--PY 161 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSSSSSCCEEEEEECTTCGGG-CCSCHH-HHHHHHHHHTC--CE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-cccCHH-HHHHHHHHcCC--CE
Confidence 9999999999999999999999999874 888887654 58999999999999764 334333 33455555552 89
Q ss_pred EEecCCCCCCchhHHHHHHHHHh
Q 008219 158 IECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 158 ~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
++|||++|.|++++++.+.+.+.
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988653
No 63
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.91 E-value=4.5e-24 Score=194.30 Aligned_cols=160 Identities=22% Similarity=0.324 Sum_probs=125.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
..+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999887655443333222 334445557889999999999888888999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
|||++++.++..+.. |+..+.... .++|+++|+||+|+... .+..+ ....+...++. +++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~--~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQ-WFKTVNEHANDEAQLLLVGNKSDMETR--VVTAD-QGEALAKELGI--PFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCTTC--CSCHH-HHHHHHHHHTC--CEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCCcC--ccCHH-HHHHHHHHcCC--eEEEEECCCCCCHHHH
Confidence 999999999998874 888887654 58999999999999432 33333 33555666652 8999999999999999
Q ss_pred HHHHHHHHh
Q 008219 172 FYYAQKAVL 180 (573)
Q Consensus 172 ~~~i~~~~~ 180 (573)
++.+.+.+.
T Consensus 156 ~~~l~~~~~ 164 (170)
T 1g16_A 156 FFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 64
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.91 E-value=7.3e-24 Score=197.63 Aligned_cols=163 Identities=22% Similarity=0.260 Sum_probs=131.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
....+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.||||||++.+......+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 35579999999999999999999999888766555443322 3444556678999999999999988899999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
|+|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+..++ ...+....+ .++++|||++|.|++
T Consensus 102 i~v~D~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVER-WLKELYDHAEATIVVMLVGNKSDLSQA-REVPTEE-ARMFAENNG--LLFLETSALDSTNVE 176 (193)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHTTSCTTCEEEEEEECGGGGGG-CCSCHHH-HHHHHHHTT--CEEEEECTTTCTTHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECCCcccc-cccCHHH-HHHHHHHcC--CEEEEEeCCCCCCHH
Confidence 99999999999998875 888887653 58999999999999764 3344333 344555554 289999999999999
Q ss_pred hHHHHHHHHHh
Q 008219 170 EVFYYAQKAVL 180 (573)
Q Consensus 170 ~l~~~i~~~~~ 180 (573)
++++.+.+.+.
T Consensus 177 ~l~~~l~~~i~ 187 (193)
T 2oil_A 177 LAFETVLKEIF 187 (193)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 65
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=5.9e-24 Score=198.86 Aligned_cols=163 Identities=25% Similarity=0.360 Sum_probs=129.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
...+.+||+|+|++|||||||+++|+++.+...+.++.+... ....+....+.+.+|||||++. ......+++.+|++
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 345689999999999999999999999988777655544322 3345556678899999999988 67778899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCC-C
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI-Q 167 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-g 167 (573)
++|||++++.+++.+.. |+..+... ..++|+++|+||+|+... +.+..++. ..+...++ .++++|||++|. |
T Consensus 103 ilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~-~~v~~~~~-~~~~~~~~--~~~~~~Sa~~g~~g 177 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHS-RQVSTEEG-EKLATELA--CAFYECSACTGEGN 177 (196)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGG-CCSCHHHH-HHHHHHHT--SEEEECCTTTCTTC
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECcccccc-cccCHHHH-HHHHHHhC--CeEEEECCCcCCcC
Confidence 99999999999999875 88777653 258999999999999764 34444433 44555554 289999999999 9
Q ss_pred chhHHHHHHHHHh
Q 008219 168 VPEVFYYAQKAVL 180 (573)
Q Consensus 168 i~~l~~~i~~~~~ 180 (573)
++++|+++.+.+.
T Consensus 178 i~~l~~~l~~~i~ 190 (196)
T 2atv_A 178 ITEIFYELCREVR 190 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 66
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.91 E-value=7.5e-24 Score=196.97 Aligned_cols=164 Identities=21% Similarity=0.351 Sum_probs=120.1
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 11 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
...++.+||+++|++|||||||+++|+++.+...+.++..... ....+....+.+.||||||++.+......+++.+|+
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 3456789999999999999999999999887766555443322 334444556789999999999888888899999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCC
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (573)
+++|||++++.++..+.. |+..+.... .++|+++|+||+|+... .... +....+...++. ++++|||++|.|
T Consensus 96 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~~--~~~~-~~~~~~~~~~~~--~~~~~Sa~~~~g 169 (190)
T 3con_A 96 FLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLPTR--TVDT-KQAHELAKSYGI--PFIETSAKTRQG 169 (190)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSCC--CSCH-HHHHHHHHHHTC--CEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCcCCcc--cCCH-HHHHHHHHHcCC--eEEEEeCCCCCC
Confidence 999999999999998874 888876643 37999999999998763 2333 334556666653 899999999999
Q ss_pred chhHHHHHHHHHh
Q 008219 168 VPEVFYYAQKAVL 180 (573)
Q Consensus 168 i~~l~~~i~~~~~ 180 (573)
++++++++.+.+.
T Consensus 170 i~~l~~~l~~~~~ 182 (190)
T 3con_A 170 VEDAFYTLVREIR 182 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 67
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=5e-24 Score=194.30 Aligned_cols=160 Identities=22% Similarity=0.305 Sum_probs=125.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
+.+||+++|++|||||||+|+|+++.+...+.++.+. +..........+.+.+|||||++.+......+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 4689999999999999999999998876554443333 333344455667899999999999998889999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 94 YACDRPETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
||++++.+++.+.. |+..+.... +++|+++|+||+|+... +.+...+ ...+...++ .++++|||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~-~~v~~~~-~~~~~~~~~--~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPS-REVQSSE-AEALARTWK--CAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGG-CCSCHHH-HHHHHHHHT--CEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEccccccc-cccCHHH-HHHHHHHhC--CeEEEecCCCCcCHHH
Confidence 99999999988875 776665532 47999999999998764 3343333 244555554 2899999999999999
Q ss_pred HHHHHHHHH
Q 008219 171 VFYYAQKAV 179 (573)
Q Consensus 171 l~~~i~~~~ 179 (573)
+++++.+.+
T Consensus 157 l~~~l~~~~ 165 (172)
T 2erx_A 157 LFQELLNLE 165 (172)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 999998854
No 68
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.91 E-value=1e-23 Score=194.08 Aligned_cols=164 Identities=22% Similarity=0.290 Sum_probs=130.6
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
...+.+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++.+......+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 345689999999999999999999999988777666544332 3334445567899999999999988889999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHH-Hhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCc
Q 008219 91 VLTYACDRPETLDELSTFWLPEL-RRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l-~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (573)
++|||++++.++..+.. |+..+ +.. ..++|+++|+||+|+... +.+..++ ...+....+ .++++|||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~v~~~~-~~~~~~~~~--~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQ-RQVPRSE-ASAFGASHH--VAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGG-CCSCHHH-HHHHHHHTT--CEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-cccCHHH-HHHHHHHcC--CeEEEecCCCCCCH
Confidence 99999999999999885 77666 433 358999999999999764 3344333 344555554 28999999999999
Q ss_pred hhHHHHHHHHHh
Q 008219 169 PEVFYYAQKAVL 180 (573)
Q Consensus 169 ~~l~~~i~~~~~ 180 (573)
+++++++.+.+.
T Consensus 160 ~~l~~~l~~~~~ 171 (181)
T 2fn4_A 160 DEAFEQLVRAVR 171 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 69
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.91 E-value=1.3e-23 Score=198.04 Aligned_cols=163 Identities=21% Similarity=0.334 Sum_probs=131.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
....+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.||||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 34579999999999999999999999888766544433322 3344555567899999999999988899999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
|+|||++++.++..+.. |+..+.... .+.|+++|+||+|+... +.+..++ ...+....+. +++++||++|.|++
T Consensus 85 ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~~--~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDK-RVVEYDV-AKEFADANKM--PFLETSALDSTNVE 159 (206)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTT-CCSCHHH-HHHHHHHTTC--CEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCccc-cccCHHH-HHHHHHHcCC--eEEEEeCCCCCCHH
Confidence 99999999999999885 888887653 57999999999999875 3344433 3445555552 89999999999999
Q ss_pred hHHHHHHHHHh
Q 008219 170 EVFYYAQKAVL 180 (573)
Q Consensus 170 ~l~~~i~~~~~ 180 (573)
++|+.+.+.+.
T Consensus 160 ~l~~~l~~~i~ 170 (206)
T 2bcg_Y 160 DAFLTMARQIK 170 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 70
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.91 E-value=2.2e-23 Score=195.90 Aligned_cols=161 Identities=22% Similarity=0.333 Sum_probs=126.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCc----------------------------
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDR---------------------------- 62 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------------------- 62 (573)
....+||+|+|++|||||||+++|++..+...+.++.+... ....+....
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 35679999999999999999999999988766555544322 222222222
Q ss_pred ---------eeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 008219 63 ---------VPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133 (573)
Q Consensus 63 ---------~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~ 133 (573)
+.+.||||||++.+......+++.+|++++|+|++++.++..+.. |+..+.... +.|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~-~~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKT-WVNQLKISS-NYIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHH-HHHHHHHHS-CCEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHhhC-CCcEEEEEECCC-cc
Confidence 789999999999998889999999999999999999999998874 888887754 499999999999 33
Q ss_pred CcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHHHHHHHh
Q 008219 134 ENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
. +.+..++. ..+....+. ++++|||++|.|++++++++.+.+.
T Consensus 161 ~-~~~~~~~~-~~~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 161 K-FQVDILEV-QKYAQDNNL--LFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp --CCSCHHHH-HHHHHHTTC--EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred c-ccCCHHHH-HHHHHHcCC--cEEEEecCCCCCHHHHHHHHHHHHH
Confidence 2 33444433 445555542 8999999999999999999988653
No 71
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.91 E-value=1.3e-24 Score=207.49 Aligned_cols=167 Identities=16% Similarity=0.272 Sum_probs=133.7
Q ss_pred CCCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhcc
Q 008219 9 SGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRR 86 (573)
Q Consensus 9 ~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (573)
........+||+|+|++|||||||+++|+.+.+...+.++.+.+. ....+....+.+.||||||++.+......+++.
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 344556789999999999999999999887776655444444444 344555667899999999999998889999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCC
Q 008219 87 ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (573)
Q Consensus 87 ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (573)
+|++++|||++++.++..+.. |+..+.....++|+++|+||+|+.... ... ....+....+ .++++|||++|.
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~--~~~~~~~~~~--~~~~~~Sa~~~~ 160 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRK--VKA--KSIVFHRKKN--LQYYDISAKSNY 160 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHH-HHHHHHHHSTTCCEEEEEECTTSSSCS--SCG--GGCCHHHHHT--CEEEECBGGGTB
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECCcccccc--ccH--HHHHHHHHcC--CEEEEEeCCCCC
Confidence 999999999999999999985 999998877799999999999997652 111 1123334444 289999999999
Q ss_pred CchhHHHHHHHHHhCC
Q 008219 167 QVPEVFYYAQKAVLHP 182 (573)
Q Consensus 167 gi~~l~~~i~~~~~~~ 182 (573)
|++++|+.+.+.+...
T Consensus 161 gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 161 NFEKPFLWLARKLIGD 176 (221)
T ss_dssp TTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999987654
No 72
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.91 E-value=2.2e-23 Score=190.01 Aligned_cols=163 Identities=13% Similarity=0.116 Sum_probs=122.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
..++.+||+++|++|||||||+++|+++.+....++ .+..... +...++.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t-~~~~~~~--~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 3 HMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPT-IGFNVET--VTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCC-SSEEEEE--EEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCc-CccceEE--EEECCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 345679999999999999999999999887654443 3322222 3334789999999999999888999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHh-cc-cCeEEEecCCCCCC
Q 008219 92 LTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF-RE-IETCIECSALKQIQ 167 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~Sa~~~~g 167 (573)
+|+|++++.++..... |+..+... ..++|+++|+||+|+... ....+....+.... .. ..++++|||++|.|
T Consensus 80 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (171)
T 1upt_A 80 YVVDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQA---MTSSEMANSLGLPALKDRKWQIFKTSATKGTG 155 (171)
T ss_dssp EEEETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGCTTSCEEEEECCTTTCTT
T ss_pred EEEECCCHHHHHHHHH-HHHHHHhchhhCCCEEEEEEECCCCcCC---CCHHHHHHHhCchhccCCceEEEECcCCCCcC
Confidence 9999999999998886 55544332 258999999999999765 11222211111111 00 12799999999999
Q ss_pred chhHHHHHHHHHhC
Q 008219 168 VPEVFYYAQKAVLH 181 (573)
Q Consensus 168 i~~l~~~i~~~~~~ 181 (573)
++++++++.+.+..
T Consensus 156 i~~l~~~l~~~i~~ 169 (171)
T 1upt_A 156 LDEAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887643
No 73
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.91 E-value=7.8e-24 Score=196.78 Aligned_cols=162 Identities=23% Similarity=0.333 Sum_probs=126.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccch-hhhHhhhccCCE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDR-GKLGEELRRADA 89 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad~ 89 (573)
.++.+||+|+|++|||||||+++|+++.+...+.++.+... ....+....+.+.||||||++.+. .....+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 45679999999999999999999999888766544443322 334445556899999999998887 778889999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCC--
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ-- 165 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-- 165 (573)
+|+|||++++.++..+.. |+..+... ..++|+++|+||+|+... +.+..++ ...+...++. ++++|||++|
T Consensus 97 iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~v~~~~-~~~~~~~~~~--~~~~~Sa~~~~~ 171 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSA-IQVPTDL-AQKFADTHSM--PLFETSAKNPND 171 (189)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGG-CCSCHHH-HHHHHHHTTC--CEEECCSSSGGG
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-ceeCHHH-HHHHHHHcCC--EEEEEeCCcCCc
Confidence 999999999999999885 88888664 358999999999999764 3344333 3455555552 8999999999
Q ss_pred -CCchhHHHHHHHHH
Q 008219 166 -IQVPEVFYYAQKAV 179 (573)
Q Consensus 166 -~gi~~l~~~i~~~~ 179 (573)
.|++++|+.+.+.+
T Consensus 172 ~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 172 NDHVEAIFMTLAHKL 186 (189)
T ss_dssp GSCHHHHHHHHC---
T ss_pred ccCHHHHHHHHHHHH
Confidence 99999999987754
No 74
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.91 E-value=2.2e-24 Score=199.18 Aligned_cols=162 Identities=20% Similarity=0.337 Sum_probs=101.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
...+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++.+......+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4579999999999999999999998876554332222111 23334455688999999999998888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 92 LTYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
+|||++++.+++.+.. |+..+... ..++|+++|+||+|+... +.+..++ ...++..++. ++++|||++|.|+++
T Consensus 86 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~-~~v~~~~-~~~~~~~~~~--~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRN-WIRNIEEHASADVEKMILGNKCDVNDK-RQVSKER-GEKLALDYGI--KFMETSAKANINVEN 160 (183)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEEC--CCSC-CCSCHHH-HHHHHHHHTC--EEEECCC---CCHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccCCcc-CcCCHHH-HHHHHHHcCC--eEEEEeCCCCCCHHH
Confidence 9999999999999885 88888765 357999999999999765 3444443 3455666652 899999999999999
Q ss_pred HHHHHHHHHh
Q 008219 171 VFYYAQKAVL 180 (573)
Q Consensus 171 l~~~i~~~~~ 180 (573)
+|+.+.+.+.
T Consensus 161 l~~~l~~~i~ 170 (183)
T 2fu5_C 161 AFFTLARDIK 170 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 75
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.91 E-value=1.1e-23 Score=195.62 Aligned_cols=162 Identities=17% Similarity=0.208 Sum_probs=123.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
..++.+||+|+|++|||||||+++|+++.+...+.++.+.... .+...++.+.||||||++.+...+..+++.+|+++
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 3466899999999999999999999998887655544443332 24456789999999999998888899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhc--ccCeEEEecCCCCCC
Q 008219 92 LTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR--EIETCIECSALKQIQ 167 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~g 167 (573)
+|||++++.++..+.. |+..+... ..++|+++|+||+|+... ...++....+..... ...++++|||++|.|
T Consensus 96 ~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 171 (188)
T 1zd9_A 96 YMVDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGA---LDEKELIEKMNLSAIQDREICCYSISCKEKDN 171 (188)
T ss_dssp EEEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred EEEECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccC---CCHHHHHHHhChhhhccCCeeEEEEECCCCCC
Confidence 9999999999999886 65555432 258999999999999765 122222111111110 112789999999999
Q ss_pred chhHHHHHHHHH
Q 008219 168 VPEVFYYAQKAV 179 (573)
Q Consensus 168 i~~l~~~i~~~~ 179 (573)
++++++++.+.+
T Consensus 172 v~~l~~~l~~~~ 183 (188)
T 1zd9_A 172 IDITLQWLIQHS 183 (188)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 76
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.3e-23 Score=198.94 Aligned_cols=164 Identities=21% Similarity=0.327 Sum_probs=126.1
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccC
Q 008219 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRA 87 (573)
Q Consensus 10 ~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 87 (573)
+......+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.||||||++.+...+..+++.+
T Consensus 14 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 33456689999999999999999999999887655444333222 2334444458899999999998888889999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCC
Q 008219 88 DAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (573)
Q Consensus 88 d~il~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (573)
|++++|||++++.++..+.. |+..+.... .++|+++|+||+|+.. +.+..+ ....+...++. ++++|||++|.
T Consensus 94 d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~--~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~ 167 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQ-WFKTVNEHANDEAQLLLVGNKSDMET--RVVTAD-QGEALAKELGI--PFIESSAKNDD 167 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHHTTTCSEEEEEEECTTCSS--CCSCHH-HHHHHHHHHTC--CEEECBTTTTB
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcc--cccCHH-HHHHHHHHcCC--EEEEEeCCCCC
Confidence 99999999999999998874 888887654 4799999999999943 233333 33455566652 89999999999
Q ss_pred CchhHHHHHHHHH
Q 008219 167 QVPEVFYYAQKAV 179 (573)
Q Consensus 167 gi~~l~~~i~~~~ 179 (573)
|++++++++.+.+
T Consensus 168 gi~~l~~~l~~~~ 180 (213)
T 3cph_A 168 NVNEIFFTLAKLI 180 (213)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 77
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.4e-23 Score=194.65 Aligned_cols=163 Identities=9% Similarity=0.119 Sum_probs=119.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
++.+||+|+|++|||||||+++|+++.+. .+.++.+.+..... .+++.+.+|||||++.+...+..+++.+|++++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIV--INNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEE--ETTEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 56899999999999999999999988776 33333333222222 3468999999999999988899999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHH-hcc-cCeEEEecCCCCCCch
Q 008219 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQ-FRE-IETCIECSALKQIQVP 169 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~Sa~~~~gi~ 169 (573)
+|++++.+++.+.. |+..+... ..+.|+++|+||+|+... ...++....+... +.. ..++++|||++|.|++
T Consensus 91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 91 VDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 99999999999986 76666553 258999999999999764 2222222222111 111 1279999999999999
Q ss_pred hHHHHHHHHHhCCC
Q 008219 170 EVFYYAQKAVLHPT 183 (573)
Q Consensus 170 ~l~~~i~~~~~~~~ 183 (573)
++++++.+.+..+.
T Consensus 167 ~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 167 QGLEWMMSRLKIRL 180 (187)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999875443
No 78
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1e-23 Score=201.58 Aligned_cols=165 Identities=22% Similarity=0.276 Sum_probs=126.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
....+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.||||||++.+...+..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 35679999999999999999999999888766544433322 3344445558899999999999988899999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
|+|||++++.+++.+.. |+..+.... .++|++||+||+|+... +.+..++ ...+....+ .+++++||++|.||+
T Consensus 90 ilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~-~~v~~~~-~~~~~~~~~--~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNH-WLSELRENADDNVAVGLIGNKSDLAHL-RAVPTEE-SKTFAQENQ--LLFTETSALNSENVD 164 (223)
T ss_dssp EEEEC-CCHHHHHHHHH-HHHHHHHHCC--CEEEEEECCGGGGGG-CCSCHHH-HHHHHHHTT--CEEEECCCC-CCCHH
T ss_pred EEEEeCCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc-cccCHHH-HHHHHHHcC--CEEEEEeCCCCCCHH
Confidence 99999999999999885 888887653 57999999999999764 3444443 344555554 289999999999999
Q ss_pred hHHHHHHHHHhCC
Q 008219 170 EVFYYAQKAVLHP 182 (573)
Q Consensus 170 ~l~~~i~~~~~~~ 182 (573)
++|+++.+.+...
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987643
No 79
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.91 E-value=2.7e-24 Score=202.82 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=97.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCC--eeecccccCC--ceeEEEEeCCCCccchhhhHhhhccC
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAAD--TFPANVPPVLPP--TRLPEDFYPD--RVPITIIDTPSSVEDRGKLGEELRRA 87 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~--~~~~~~~~~~~~--~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~a 87 (573)
+..+||+|+|++|||||||+++|++. .+...+.++.+. ......+... .+.+.||||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999998 676665554431 2233444444 78999999999998888888999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCC-CcccccHHHHHHHHHHHhcccCeEEEecC
Q 008219 88 DAVVLTYACDRPETLDELSTFWLPELRRLE----VKVPVIVVGCKLDLRD-ENQQVSLEQVMMPIMQQFREIETCIECSA 162 (573)
Q Consensus 88 d~il~v~D~~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (573)
|++++|||++++.++..+.. |+..+.... .++|+++|+||+|+.. . +.+..++ ...+...++ .++++|||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~-~~v~~~~-~~~~~~~~~--~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKA-WFELLKSARPDRERPLRAVLVANKTDLPPQR-HQVRLDM-AQDWATTNT--LDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHH-HHHHHHHHCSCTTSCCEEEEEEECC--------CCCHHH-HHHHHHHTT--CEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHH-HHHHHHHhhcccccCCcEEEEEECcccchhh-ccCCHHH-HHHHHHHcC--CEEEEecc
Confidence 99999999999999999884 998887754 3899999999999987 3 3444443 355666665 38999999
Q ss_pred CC-CCCchhHHHHHHHHHh
Q 008219 163 LK-QIQVPEVFYYAQKAVL 180 (573)
Q Consensus 163 ~~-~~gi~~l~~~i~~~~~ 180 (573)
++ |.|++++|+++.+.+.
T Consensus 173 ~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp -------CHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 99 9999999999988654
No 80
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.91 E-value=1.1e-23 Score=198.60 Aligned_cols=163 Identities=23% Similarity=0.314 Sum_probs=127.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i 90 (573)
....+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.||||||++.+......+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45679999999999999999999999887766555443322 3344555668999999999998888888999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCC
Q 008219 91 VLTYACDRPETLDELSTFWLPELRRLE-----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (573)
Q Consensus 91 l~v~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (573)
|+|||++++.++..+.. |+..+.... .++|+++|+||+|+... .+..++ ...+....... +++++||++|
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~-~~~~~~~~~~~-~~~~~Sa~~g 159 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR-AQAWCYSKNNI-PYFETSAKEA 159 (207)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH-HHHHHHHTTSC-CEEECBTTTT
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcccccCCCCcEEEEEECCCCccc--ccCHHH-HHHHHHhcCCc-eEEEEeCCCC
Confidence 99999999999998874 887775532 47899999999999742 333333 33444423322 8999999999
Q ss_pred CCchhHHHHHHHHHh
Q 008219 166 IQVPEVFYYAQKAVL 180 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~ 180 (573)
.|++++++++.+.+.
T Consensus 160 ~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 160 INVEQAFQTIARNAL 174 (207)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 81
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.91 E-value=2.2e-23 Score=188.77 Aligned_cols=156 Identities=12% Similarity=0.120 Sum_probs=118.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeC
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~ 96 (573)
+||+++|++|||||||+++|+++.+....|+ .+... ..+...++.+.+|||||++.+...+..+++.+|++++|||+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t-~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 77 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNV--ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCC-SSCCE--EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCc-CceeE--EEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 6899999999999999999998887654443 32222 23445678999999999999988888999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhc--ccCeEEEecCCCCCCchhHH
Q 008219 97 DRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR--EIETCIECSALKQIQVPEVF 172 (573)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~ 172 (573)
+++.++..... |+..+... .++.|+++|+||+|+... ...++....+..... ...++++|||++|.|+++++
T Consensus 78 ~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 78 NDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp TCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred CCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCC---CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 99999998885 66665442 258999999999999765 222222111111110 01269999999999999999
Q ss_pred HHHHHHH
Q 008219 173 YYAQKAV 179 (573)
Q Consensus 173 ~~i~~~~ 179 (573)
+++.+.+
T Consensus 154 ~~l~~~i 160 (164)
T 1r8s_A 154 DWLSNQL 160 (164)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9998764
No 82
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.91 E-value=1e-23 Score=197.60 Aligned_cols=157 Identities=22% Similarity=0.306 Sum_probs=113.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
.+.+||+++|++|||||||+++|.++.+.. +.++.+.+.. .+..+++.+.+|||||++.+...+..+++.+|++++|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSE--ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFL 99 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCceeE--EEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence 467899999999999999999999887653 3333333333 2333458999999999999988888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhc---------------ccCe
Q 008219 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR---------------EIET 156 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 156 (573)
||++++.++..+.. |+..+... ..++|+++|+||+|+... +..++. ........ ...+
T Consensus 100 ~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (198)
T 1f6b_A 100 VDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPEA---ISEERL-REMFGLYGQTTGKGSVSLKELNARPLE 174 (198)
T ss_dssp EETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTTC---CCHHHH-HHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred EECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCcccc---CCHHHH-HHHhCcccccccccccccccccCceEE
Confidence 99999999999885 76666542 258999999999999763 333333 22222110 1137
Q ss_pred EEEecCCCCCCchhHHHHHHHH
Q 008219 157 CIECSALKQIQVPEVFYYAQKA 178 (573)
Q Consensus 157 ~~~~Sa~~~~gi~~l~~~i~~~ 178 (573)
+++|||++|.|++++|+++.+.
T Consensus 175 ~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 175 VFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999998763
No 83
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.91 E-value=1.6e-23 Score=192.38 Aligned_cols=161 Identities=24% Similarity=0.315 Sum_probs=127.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
++.+||+|+|++|||||||+++|++..+...+.++.+... ....+....+.+.+|||||++.+......+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 5679999999999999999999998887766544433222 33344455678999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 92 LTYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
+|||++++.++..+.. |+..+... ..++|+++|+||+|+... +.+..++. ..+....+ .++++|||++|.|+++
T Consensus 92 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~-~~~~~~~~--~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSK-WIDDVRTERGSDVIIMLVGNKTDLSDK-RQVSTEEG-ERKAKELN--VMFIETSAKAGYNVKQ 166 (179)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECGGGGGG-CCSCHHHH-HHHHHHHT--CEEEEEBTTTTBSHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCccccc-CcCCHHHH-HHHHHHcC--CeEEEEeCCCCCCHHH
Confidence 9999999999998875 88777654 358999999999999764 33444433 34445554 2899999999999999
Q ss_pred HHHHHHHHH
Q 008219 171 VFYYAQKAV 179 (573)
Q Consensus 171 l~~~i~~~~ 179 (573)
+++.+.+.+
T Consensus 167 l~~~l~~~~ 175 (179)
T 2y8e_A 167 LFRRVAAAL 175 (179)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 999998754
No 84
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.90 E-value=8.9e-24 Score=198.38 Aligned_cols=162 Identities=26% Similarity=0.330 Sum_probs=122.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
...+||+|+|++|||||||+++|+++.+...+.++.+... ....+....+.+.||||||++.+......+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 4579999999999999999999999887665444333222 33344455689999999999888888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 92 LTYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
+|||++++.+++.+.. |+..+... ..++|+++|+||+|+... +.+...+. ..+....+ .++++|||++|.|+++
T Consensus 103 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~-~~v~~~~~-~~~~~~~~--~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 103 LVYDITSRETYNSLAA-WLTDARTLASPNIVVILCGNKKDLDPE-REVTFLEA-SRFAQENE--LMFLETSALTGENVEE 177 (200)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHTCTTCEEEEEEECGGGGGG-CCSCHHHH-HHHHHHTT--CEEEEECTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCcccc-cccCHHHH-HHHHHHcC--CEEEEEeCCCCCCHHH
Confidence 9999999999999875 88877664 358999999999999754 33444433 44455554 2899999999999999
Q ss_pred HHHHHHHHHh
Q 008219 171 VFYYAQKAVL 180 (573)
Q Consensus 171 l~~~i~~~~~ 180 (573)
+|+.+.+.+.
T Consensus 178 l~~~l~~~i~ 187 (200)
T 2o52_A 178 AFLKCARTIL 187 (200)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.90 E-value=1.9e-23 Score=194.49 Aligned_cols=156 Identities=19% Similarity=0.303 Sum_probs=118.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
.+.+||+++|++|||||||+++|.++.+.. +.++.+.+... +..+++.+.+|||||++.+......+++.+|++++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 97 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEE--LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFL 97 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCEEEE--EEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCCeEE--EEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 567899999999999999999999988754 33344444333 333458999999999999888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhc----------ccCeEEEec
Q 008219 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR----------EIETCIECS 161 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~S 161 (573)
||++++.+++.+.. |+..+... ..++|+++|+||+|+... +..++.. ....... ...++++||
T Consensus 98 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T 1m2o_B 98 VDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA---VSEAELR-SALGLLNTTGSQRIEGQRPVEVFMCS 172 (190)
T ss_dssp EETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTC---CCHHHHH-HHTTCSSCCC---CCSSCCEEEEECB
T ss_pred EECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcCC---CCHHHHH-HHhCCccccccccccccceEEEEEeE
Confidence 99999999999885 66666442 258999999999999763 3333322 2111110 112799999
Q ss_pred CCCCCCchhHHHHHHH
Q 008219 162 ALKQIQVPEVFYYAQK 177 (573)
Q Consensus 162 a~~~~gi~~l~~~i~~ 177 (573)
|++|.|++++|+++.+
T Consensus 173 a~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 173 VVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp TTTTBSHHHHHHHHHT
T ss_pred CCcCCCHHHHHHHHHh
Confidence 9999999999999875
No 86
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.90 E-value=1.2e-23 Score=194.21 Aligned_cols=161 Identities=11% Similarity=0.143 Sum_probs=117.1
Q ss_pred CCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 10 ~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
.....+.+||+|+|++|||||||+++|+++.+. .+.++.+....... .+++.+.+|||||++.+...+..+++.+|+
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIV--INNTRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSCE-EEECCSSSSCEEEE--ETTEEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCCC-ccCCcCceeeEEEE--ECCEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 344567899999999999999999999998872 33333333222222 356899999999999998889999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHh-cc-cCeEEEecCCCC
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF-RE-IETCIECSALKQ 165 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~Sa~~~ 165 (573)
+++|||++++.+++.+.. |+..+... ..++|+++|+||+|+... ...++....+.... .. ..++++|||++|
T Consensus 92 ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 92 VIVVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTG 167 (181)
T ss_dssp EEEEEETTCTTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHhChhhCCCeEEEEEECCCcccC---CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 999999999999999886 55555442 358999999999999764 22222211111110 11 127999999999
Q ss_pred CCchhHHHHHHH
Q 008219 166 IQVPEVFYYAQK 177 (573)
Q Consensus 166 ~gi~~l~~~i~~ 177 (573)
.|++++++++.+
T Consensus 168 ~gi~~l~~~l~~ 179 (181)
T 2h17_A 168 EGLCQGLEWMMS 179 (181)
T ss_dssp BTHHHHHHHHHT
T ss_pred cCHHHHHHHHHh
Confidence 999999999875
No 87
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.6e-23 Score=196.13 Aligned_cols=163 Identities=23% Similarity=0.308 Sum_probs=128.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
...+||+|+|++|||||||+++|+++.+...+.++.+.+ .....+....+.+.+|||||++.+......+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 457999999999999999999999988766654444332 2334445567789999999999998888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCch
Q 008219 93 TYACDRPETLDELSTFWLPELRRL---EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
|||++++.+++.+.. |+..+... .+++|+++|+||+|+... .+..+ ....+...++. ++++|||++|.|++
T Consensus 86 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~~--~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~gi~ 159 (199)
T 2gf0_A 86 VFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQR--EVDTR-EAQAVAQEWKC--AFMETSAKMNYNVK 159 (199)
T ss_dssp EEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSSC--SSCHH-HHHHHHHHHTC--EEEECBTTTTBSHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCcc--ccCHH-HHHHHHHHhCC--eEEEEecCCCCCHH
Confidence 999999999988875 66666543 247899999999999753 23333 33445555552 89999999999999
Q ss_pred hHHHHHHHHHhCC
Q 008219 170 EVFYYAQKAVLHP 182 (573)
Q Consensus 170 ~l~~~i~~~~~~~ 182 (573)
++++++.+.+...
T Consensus 160 ~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 160 ELFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHHCSSS
T ss_pred HHHHHHHHHHhhh
Confidence 9999999876443
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.90 E-value=2.7e-23 Score=193.26 Aligned_cols=163 Identities=17% Similarity=0.249 Sum_probs=121.1
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADT-FPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 11 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
....+.+||+|+|++|||||||+++|++.. +...+.++.+.... .+..+++.+.+|||||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE--KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE--EEECSSCEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE--EEEECCEEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 344678999999999999999999999887 45555544443333 233446899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcccccHHHHHHHHH-HHhc-ccCeEEEecCC
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRLE----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIM-QQFR-EIETCIECSAL 163 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~Sa~ 163 (573)
+++|||++++.++..+.. |+..+.... .++|+++|+||+|+... ...++....+. ..+. ...++++|||+
T Consensus 94 ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDA---VTSVKVSQLLCLENIKDKPWHICASDAI 169 (190)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccC---CCHHHHHHHhChhhccCCceEEEEccCC
Confidence 999999999999999886 665554432 48999999999999764 22333222221 1111 11279999999
Q ss_pred CCCCchhHHHHHHHHH
Q 008219 164 KQIQVPEVFYYAQKAV 179 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~~ 179 (573)
+|.|++++++++.+.+
T Consensus 170 ~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQI 185 (190)
T ss_dssp TTBTHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999998764
No 89
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.90 E-value=3.9e-23 Score=191.37 Aligned_cols=160 Identities=12% Similarity=0.147 Sum_probs=121.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
++.+||+++|++|||||||+++|+++. ...+.++.+....... .+++.+.+|||||++.+...+..+++.+|++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~--~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLE--HRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 92 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEE--ETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 578999999999999999999999887 4444444443333333 3578999999999998888889999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHH-h-cccCeEEEecCCCCCCch
Q 008219 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQ-F-REIETCIECSALKQIQVP 169 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~Sa~~~~gi~ 169 (573)
+|++++.+++.+.. |+..+... ..++|+++|+||+|+... ...++....+... . ....++++|||++|.|++
T Consensus 93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 93 VDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGA---LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCC---CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 99999999999886 66555432 258999999999999765 2222221111111 0 011279999999999999
Q ss_pred hHHHHHHHHHh
Q 008219 170 EVFYYAQKAVL 180 (573)
Q Consensus 170 ~l~~~i~~~~~ 180 (573)
++++++.+.+.
T Consensus 169 ~l~~~l~~~i~ 179 (186)
T 1ksh_A 169 PGIDWLLDDIS 179 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 90
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.90 E-value=3.4e-23 Score=193.06 Aligned_cols=162 Identities=25% Similarity=0.266 Sum_probs=120.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCe-eecccccCCceeEEEEeCCCCcc-chhhhHhhhccCCE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADT--FPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVE-DRGKLGEELRRADA 89 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~ 89 (573)
+..+||+|+|++|||||||+|+|++.. +...++++..++ .....+++..+.+.+|||+|... +......+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 456999999999999999999999643 444444433333 24445556667889999999876 44566778899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCC
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (573)
+++|||++++.+|+.+.. |...+... ..++|+++|+||+|+... +.+..++. ..++..++ .++++|||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~-r~v~~~~~-~~~a~~~~--~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRX-REVSVSEG-RAXAVVFD--XKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGG-CCSCHHHH-HHHHHHTT--CEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhcc-ccccHHHH-HHHHHHhC--CceEEeccccCCC
Confidence 999999999999999875 87777653 247999999999999754 44544433 33444444 2899999999999
Q ss_pred chhHHHHHHHHHh
Q 008219 168 VPEVFYYAQKAVL 180 (573)
Q Consensus 168 i~~l~~~i~~~~~ 180 (573)
|+++|+.+.+.+.
T Consensus 159 v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 159 VKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.90 E-value=2.8e-23 Score=191.74 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=118.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
.+.+||+++|++|||||||+++|++..+.. +.++.+.+..... .+++.+.+|||||++.+...+..+++.+|++++|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g~~~~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQ--SQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEEEEEEE--ETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCCeEEEEEE--ECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 567999999999999999999999876432 2223333322223 3478999999999999988889999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHh--cccCeEEEecCCCCCCch
Q 008219 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF--REIETCIECSALKQIQVP 169 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~ 169 (573)
||++++.++..+.. |+..+... ..++|+++|+||+|+... ...++....+.... ....++++|||++|.|++
T Consensus 91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 91 IDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTA---APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccC---CCHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 99999999998875 66555332 258999999999999865 12222211111110 011279999999999999
Q ss_pred hHHHHHHHHH
Q 008219 170 EVFYYAQKAV 179 (573)
Q Consensus 170 ~l~~~i~~~~ 179 (573)
++|+++.+.+
T Consensus 167 ~l~~~l~~~~ 176 (181)
T 1fzq_A 167 DGMNWVCKNV 176 (181)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 92
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.90 E-value=8.1e-24 Score=201.38 Aligned_cols=166 Identities=17% Similarity=0.268 Sum_probs=127.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeccccc---CCceeEEEEeCCCCccchhhhHhhhccCCE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY---PDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~ 89 (573)
....+||+|+|++|||||||+|+|+++.+...+.++.+.......+. ...+.+.+|||||++.+......+++.+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 45689999999999999999999998887766555444444222222 223789999999999888888899999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCc
Q 008219 90 VVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (573)
Q Consensus 90 il~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (573)
+|+|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+.... ...+....+ .++++|||++|.|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~-~~~~~~~~~--~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 88 AILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPIVVCANKIDIKNR-QKISKKL-VMEVLKGKN--YEYFEISAKTAHNF 162 (218)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHCSSSCEEEEEECTTCC-----CCHHH-HHHHTTTCC--CEEEEEBTTTTBTT
T ss_pred EEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCccc-cccCHHH-HHHHHHHcC--CcEEEEecCCCCCH
Confidence 999999999999999884 888887644 35899999999999764 3333332 233333333 38999999999999
Q ss_pred hhHHHHHHHHHhCCC
Q 008219 169 PEVFYYAQKAVLHPT 183 (573)
Q Consensus 169 ~~l~~~i~~~~~~~~ 183 (573)
+++|+.+.+.+....
T Consensus 163 ~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 163 GLPFLHLARIFTGRP 177 (218)
T ss_dssp THHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999886544
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.90 E-value=3.2e-23 Score=193.26 Aligned_cols=157 Identities=12% Similarity=0.167 Sum_probs=116.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
..++.+||+|+|++|||||||+++|+++.+....| +.+.. ...+...++.+.+|||||++.+...+..+++.+|+++
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~-t~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFN--VETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE-ETTEE--EEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCC-cCcee--EEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 34678999999999999999999999887764333 22221 2233456789999999999999888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc------cCeEEEecCC
Q 008219 92 LTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE------IETCIECSAL 163 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~ 163 (573)
+|||++++.++..+.. |+..+... ..++|+++|+||+|+... ...++ +...++. ..++++|||+
T Consensus 102 lv~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~----i~~~~~~~~~~~~~~~~~~~SA~ 173 (192)
T 2b6h_A 102 FVVDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNA---MPVSE----LTDKLGLQHLRSRTWYVQATCAT 173 (192)
T ss_dssp EEEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHH----HHHHTTGGGCSSCCEEEEECBTT
T ss_pred EEEECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCC---CCHHH----HHHHhCcccccCCceEEEECcCC
Confidence 9999999999999885 66665442 258999999999999765 22222 2222221 1268999999
Q ss_pred CCCCchhHHHHHHHHH
Q 008219 164 KQIQVPEVFYYAQKAV 179 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~~ 179 (573)
+|.|++++++++.+.+
T Consensus 174 ~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 174 QGTGLYDGLDWLSHEL 189 (192)
T ss_dssp TTBTHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHH
Confidence 9999999999998864
No 94
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.90 E-value=6.8e-23 Score=194.39 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=116.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCC-ceeEEEEeCCCCccchh-hhHhhhccCCEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD-RVPITIIDTPSSVEDRG-KLGEELRRADAVV 91 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~il 91 (573)
++.+||+|+|++|||||||+++|++..+...++++.... ....+... ++.+.||||||++.+.. .+..+++.+|++|
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSS-AIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEE-EEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceee-EEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 467999999999999999999999998877776543322 22344433 68899999999998887 7788899999999
Q ss_pred EEEeCCCcc-cHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhc---------------
Q 008219 92 LTYACDRPE-TLDELSTFWLPELRR---LEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR--------------- 152 (573)
Q Consensus 92 ~v~D~~~~~-s~~~~~~~~~~~l~~---~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~--------------- 152 (573)
+|||+++.. ++......|...+.. ...++|+++|+||+|+.... ..+.....+...++
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK---SAKLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC---CHHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc---cHHHHHHHHHHHHHHHhccchhccccccC
Confidence 999999853 466666556666654 23579999999999998652 12222222222211
Q ss_pred ------------------c---cCeEEEecCCCC------CCchhHHHHHHHH
Q 008219 153 ------------------E---IETCIECSALKQ------IQVPEVFYYAQKA 178 (573)
Q Consensus 153 ------------------~---~~~~~~~Sa~~~------~gi~~l~~~i~~~ 178 (573)
. ..++++|||++| .||+++|+++.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0 237999999999 9999999998764
No 95
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.90 E-value=1.3e-23 Score=199.78 Aligned_cols=163 Identities=15% Similarity=0.250 Sum_probs=126.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eecccccCC----------ceeEEEEeCCCCccchhhh
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYPD----------RVPITIIDTPSSVEDRGKL 80 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--~~~~~~~~~----------~~~~~i~Dt~G~~~~~~~~ 80 (573)
....+||+|+|++|||||||+++|++..+...+.++.+.. .....+... .+.+.||||||++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 3557999999999999999999999887754433222111 122333443 6789999999999888888
Q ss_pred HhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEE
Q 008219 81 GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCI 158 (573)
Q Consensus 81 ~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (573)
..+++.+|++|+|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+..+ ....+...++. +++
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~ 176 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQ-REVNER-QARELADKYGI--PYF 176 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGG-CCSCHH-HHHHHHHHTTC--CEE
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCCEEEEEECCccccc-cccCHH-HHHHHHHHCCC--cEE
Confidence 899999999999999999999998874 888776544 58999999999999764 334333 33555566552 799
Q ss_pred EecCCCCCCchhHHHHHHHHHh
Q 008219 159 ECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 159 ~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
+|||++|.|++++++++.+.+.
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988654
No 96
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.89 E-value=1.8e-23 Score=195.29 Aligned_cols=162 Identities=19% Similarity=0.169 Sum_probs=121.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-----------CCCCee--ecc-cccCCceeEEEEeCCCCccch
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPP-----------VLPPTR--LPE-DFYPDRVPITIIDTPSSVEDR 77 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~-----------~~~~~~--~~~-~~~~~~~~~~i~Dt~G~~~~~ 77 (573)
.....+||+|+|++|||||||++.+.+ .+...+.+ +.+... ... .+....+.+.||||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 345689999999999999999976665 44333221 111111 112 445667889999999999999
Q ss_pred hhhHhhhccCCEEEEEEeCC------CcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHh
Q 008219 78 GKLGEELRRADAVVLTYACD------RPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF 151 (573)
Q Consensus 78 ~~~~~~~~~ad~il~v~D~~------~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~ 151 (573)
..+..+++.+|++|+|||++ +..++..+.. |+..++....++|+++|+||+|+... +..++ ...+...+
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~-~l~~~~~~~~~~piilv~NK~Dl~~~---~~~~~-~~~~~~~~ 163 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYGLTLDDVPIVIQVNKRDLPDA---LPVEM-VRAVVDPE 163 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTTCCTTSSCEEEEEECTTSTTC---CCHHH-HHHHHCTT
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHH-HHHhhccccCCCCEEEEEEchhcccc---cCHHH-HHHHHHhc
Confidence 99999999999999999999 4566666664 77777555578999999999999765 33333 34445555
Q ss_pred cccCeEEEecCCCCCCchhHHHHHHHHHh
Q 008219 152 REIETCIECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 152 ~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
+. .++++|||++|.|++++|+++.+.+.
T Consensus 164 ~~-~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 164 GK-FPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp CC-SCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred CC-ceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 42 27999999999999999999988764
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.89 E-value=3.6e-23 Score=193.53 Aligned_cols=169 Identities=14% Similarity=0.111 Sum_probs=114.0
Q ss_pred CCCCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eccccc-CCceeEEEEeCCCCccchhhh---Hh
Q 008219 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFY-PDRVPITIIDTPSSVEDRGKL---GE 82 (573)
Q Consensus 8 ~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~Dt~G~~~~~~~~---~~ 82 (573)
.......+.+||+++|++|||||||++++.+........+...+.. ....+. ...+.+.+|||||++.+.... ..
T Consensus 12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 91 (196)
T 3llu_A 12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM 91 (196)
T ss_dssp --------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred CCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence 3445567789999999999999999998887433222221111111 222222 566899999999999987776 89
Q ss_pred hhccCCEEEEEEeCCCc--ccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc------ccccHHHHHHHHHHHh--c
Q 008219 83 ELRRADAVVLTYACDRP--ETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN------QQVSLEQVMMPIMQQF--R 152 (573)
Q Consensus 83 ~~~~ad~il~v~D~~~~--~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~------~~~~~~~~~~~~~~~~--~ 152 (573)
+++.+|++|+|||++++ +++..+.. |+..+....+++|++||+||+|+.... +.+. .+....++... .
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~-~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~-~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIH-QRANDDLADAGLEK 169 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHH-HHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHH-HHHHHHHHHTTCTT
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHH-HHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHH-HHHHHHHHHhhhhc
Confidence 99999999999999997 55555553 666665556799999999999987631 1111 11123333311 1
Q ss_pred ccCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 153 EIETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 153 ~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
...++++|||++ .||+++|+.+++.+
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCcceEEEEech-hhHHHHHHHHHHHh
Confidence 113899999999 99999999998754
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.89 E-value=8.6e-23 Score=189.63 Aligned_cols=160 Identities=14% Similarity=0.110 Sum_probs=120.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
++.+||+++|++|||||||+++|+++.+....|+ .+..... +...++.+.+|||||++.+...+..+++.+|++++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t-~~~~~~~--~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPT-VGVNLET--LQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSS-TTCCEEE--EEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCC-CceEEEE--EEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence 5789999999999999999999998877554443 3322222 233478999999999999888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHh-cc-cCeEEEecCCCCCCch
Q 008219 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF-RE-IETCIECSALKQIQVP 169 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~Sa~~~~gi~ 169 (573)
+|++++.++..... |+..+... ..++|+++|+||+|+... ...++....+.... .. ..++++|||++|.|++
T Consensus 97 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 97 VDSTDRDRMGVAKH-ELYALLDEDELRKSLLLIFANKQDLPDA---ASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EETTCCTTHHHHHH-HHHHHHTCSTTTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EeCCCHHHHHHHHH-HHHHHHhhhhcCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 99999999998886 55555332 258999999999999765 11222211111111 00 1279999999999999
Q ss_pred hHHHHHHHHHh
Q 008219 170 EVFYYAQKAVL 180 (573)
Q Consensus 170 ~l~~~i~~~~~ 180 (573)
++++++.+.+.
T Consensus 173 ~l~~~l~~~i~ 183 (189)
T 2x77_A 173 EGMDWLVERLR 183 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.81 E-value=8.9e-25 Score=205.84 Aligned_cols=165 Identities=24% Similarity=0.409 Sum_probs=128.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
..+.+||+|+|++|||||||+++|+++.+...+.++... ......+....+.+.+|||||++.+......+++.+|+++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 356899999999999999999999988876665443332 2234445566778889999999999888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-----------cccHHHHHHHHHHHhcccCeEEEe
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-----------QVSLEQVMMPIMQQFREIETCIEC 160 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 160 (573)
+|||++++.++..+...|+..++...+++|+++|+||+|+..... .+.. +....+...++. .++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~-~~~~~v 184 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY-PQGLAMAKEIGA-VKYLEC 184 (204)
Confidence 999999999999987569988887767899999999999976411 1111 122333344432 278999
Q ss_pred cCCCCCCchhHHHHHHHHH
Q 008219 161 SALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 161 Sa~~~~gi~~l~~~i~~~~ 179 (573)
||++|.|++++++.+.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999987754
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=9.4e-23 Score=188.14 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=116.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
++.+||+++|++|||||||+++|+++.+. .+.++.+...... ...++.+.+|||||++.+...+..+++.+|++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETL--SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFV 92 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEEEE--EETTEEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC-ccCCcCccceEEE--EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 57899999999999999999999987763 2333333332222 23468999999999999888889999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHH-hc-ccCeEEEecCCCCCCch
Q 008219 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQ-FR-EIETCIECSALKQIQVP 169 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~Sa~~~~gi~ 169 (573)
+|++++.+++.+.. |+..+... ..++|+++|+||+|+... ...++....+... .. ...++++|||++|.|++
T Consensus 93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 93 VDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 99999999999885 66666543 358999999999999764 2222221111100 00 01279999999999999
Q ss_pred hHHHHHHHHHh
Q 008219 170 EVFYYAQKAVL 180 (573)
Q Consensus 170 ~l~~~i~~~~~ 180 (573)
++++++.+.+.
T Consensus 169 ~l~~~l~~~~~ 179 (183)
T 1moz_A 169 EGLDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 101
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.88 E-value=2.4e-22 Score=203.96 Aligned_cols=167 Identities=25% Similarity=0.414 Sum_probs=133.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
...+||+++|++|||||||+++++++.+...+.++..... ....+.+..+.+.+|||||++.+......+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 4569999999999999999999999888776655443322 334445556778899999999998888999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------ccccHHHHHHHHHHHhcccCeEEEec
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIECS 161 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (573)
|||++++.++..+...|+..++...+++|+++|+||+|+.... +.+... ....+...++. .++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~-~~~~~~S 310 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYP-QGLAMAKEIGA-VKYLECS 310 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHH-HHHHHHHHTTC-SEEEECC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHH-HHHHHHHHcCC-cEEEEec
Confidence 9999999999998867999998877789999999999986531 122222 23445555542 3899999
Q ss_pred CCCCCCchhHHHHHHHHHhCC
Q 008219 162 ALKQIQVPEVFYYAQKAVLHP 182 (573)
Q Consensus 162 a~~~~gi~~l~~~i~~~~~~~ 182 (573)
|++|.|++++|+.+.+.++.+
T Consensus 311 a~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHhcC
Confidence 999999999999999887654
No 102
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.88 E-value=5.2e-23 Score=190.41 Aligned_cols=164 Identities=15% Similarity=0.212 Sum_probs=113.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCCee--ecccc---cCCceeEEEEeCCCCccchhhhHhhhccCC
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAAD--TFPANVPPVLPPTR--LPEDF---YPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~--~~~~~~~~~~~~~~--~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 88 (573)
.+||+|+|++|||||||+++|++. .+...+.++.+... ....+ ....+.+.+|||+|++.+......+++.+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 34444444333222 11111 235678999999999988888889999999
Q ss_pred EEEEEEeCCCc-ccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccH--HHHHHHHHHHhccc--CeEEEecCC
Q 008219 89 AVVLTYACDRP-ETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSL--EQVMMPIMQQFREI--ETCIECSAL 163 (573)
Q Consensus 89 ~il~v~D~~~~-~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~ 163 (573)
++++|||++++ .++..+. .|+..+....++.|+++|+||+|+... +.... .+....++..++.. .+++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMK-PWLFNIKARASSSPVILVGTHLDVSDE-KQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHH-HHHHHHHHHCTTCEEEEEEECGGGCCH-HHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHH-HHHHHHHhhCCCCcEEEEEECCCcccc-hhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999997 4788887 499888776668999999999998764 22110 11112222222210 138999999
Q ss_pred CCC-CchhHHHHHHHHHhC
Q 008219 164 KQI-QVPEVFYYAQKAVLH 181 (573)
Q Consensus 164 ~~~-gi~~l~~~i~~~~~~ 181 (573)
+|. |++++++.+.+.+..
T Consensus 160 ~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 160 EESDALAKLRKTIINESLN 178 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 997 999999999887654
No 103
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.88 E-value=5.1e-22 Score=182.24 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=114.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
..+.++|+|+|++|||||||+++|++..+.....++.........+...+..+.+|||||++.+......++..+|++++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 45689999999999999999999999887655332221111222333456788999999999998888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc-------cCeEEEecCCCC
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE-------IETCIECSALKQ 165 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~ 165 (573)
|+|++++....... ++..+... ++|+++|+||+|+.... .++. ......... ..++++|||++|
T Consensus 85 v~d~~~~~~~~~~~--~l~~~~~~--~~p~ilv~nK~Dl~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 85 VVAADDGVMPQTVE--AINHAKAA--NVPIIVAINKMDKPEAN----PDRV-MQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEETTCCCCHHHHH--HHHHHGGG--SCCEEEEEETTTSSCSC----HHHH-HHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEECCCCCcHHHHH--HHHHHHhC--CCCEEEEEECccCCcCC----HHHH-HHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 99998865444333 33444433 79999999999997641 1111 111122111 137999999999
Q ss_pred CCchhHHHHHHHHHh
Q 008219 166 IQVPEVFYYAQKAVL 180 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~ 180 (573)
.|++++++++.+.+.
T Consensus 156 ~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 156 EGLDHLLEMILLVSE 170 (178)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhh
Confidence 999999999988653
No 104
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=203.51 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=118.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
.++.+||+|+|++|||||||+++|++..+....|+ .+. ....+...++.+.||||||++.+......+++.+|++|+
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT-~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGF--NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEE-TTE--EEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccc-cce--EEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 35678999999999999999999998887655442 221 223345567899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc------CeEEEecCCCC
Q 008219 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI------ETCIECSALKQ 165 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~ 165 (573)
|||++++.++..+...|...+.... .++|++||+||+|+... ...++ +...++.. .++++|||++|
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~---~~~~~----i~~~~~~~~~~~~~~~~~~vSAk~g 311 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA---MNAAE----ITDKLGLHSLRHRNWYIQATCATSG 311 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHH----HHHHHTCTTCCSSCEEEEECBTTTT
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc---cCHHH----HHHHhchhhhhcCCCEEEEEECCCC
Confidence 9999999999999875555554432 58999999999999875 12222 22222211 26999999999
Q ss_pred CCchhHHHHHHHHHh
Q 008219 166 IQVPEVFYYAQKAVL 180 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~ 180 (573)
.||+++|+.+.+.+.
T Consensus 312 ~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 312 DGLYEGLDWLSNQLR 326 (329)
T ss_dssp BTHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998754
No 105
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.88 E-value=7.7e-22 Score=183.25 Aligned_cols=144 Identities=20% Similarity=0.272 Sum_probs=123.8
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHH-hhhccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA-KLLSNKDSLAAC 503 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~-~~~~~~~~~~~~ 503 (573)
....+||+|+|.+|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|.+.+. .+ +..+++.+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~ 94 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM--VQHYYRNV 94 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTT--HHHHHTTC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhh--hHHHhcCC
Confidence 4567999999999999999999999999888888888888887888887666789999999999888 66 77889999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 504 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 504 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|++++|||++++.+|..+..|+..+....... ++|+++|+||+|+...+ +..++++++++.+++++|
T Consensus 95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 162 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLAN--DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLF 162 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccceeCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999999887764333 89999999999997654 457788999999988775
No 106
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.87 E-value=9.2e-22 Score=180.87 Aligned_cols=142 Identities=19% Similarity=0.287 Sum_probs=122.6
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
..+.+||+|+|.+|||||||+++|+++.+...+.++.+.+.....+...+....+.+|||+|.+.+..+ +..+++.+|
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 83 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI--TSTYYRGTH 83 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC--CGGGGTTCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh--HHHHhccCC
Confidence 346789999999999999999999999988788888888888788888866678999999999988887 888999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|..+..|+..+....+ ++|+++|+||+|+...+ +...++.++++.+++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (181)
T 3tw8_B 84 GVIVVYDVTSAESFVNVKRWLHEINQNCD----DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLF 148 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCT----TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999999877654 79999999999998765 456788999999998775
No 107
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.87 E-value=6.9e-22 Score=184.35 Aligned_cols=164 Identities=16% Similarity=0.115 Sum_probs=110.2
Q ss_pred CCCCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCC----------Cccch
Q 008219 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPS----------SVEDR 77 (573)
Q Consensus 8 ~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~ 77 (573)
.......+.++|+|+|++|||||||+|+|++..+...+.++.+.+.....+.. +..+.+||||| ++.+.
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (195)
T 1svi_A 15 PEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWG 93 (195)
T ss_dssp GGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHH
T ss_pred hhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHH
Confidence 33444567899999999999999999999998765544433333331111111 23699999999 44455
Q ss_pred hhhHhhhccC---CEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc-
Q 008219 78 GKLGEELRRA---DAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE- 153 (573)
Q Consensus 78 ~~~~~~~~~a---d~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~- 153 (573)
.....+++.+ |++++|+|++++.++.... +...+... +.|+++|+||+|+... +. .......+...+..
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~--~~p~i~v~nK~Dl~~~-~~--~~~~~~~~~~~~~~~ 166 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKYY--GIPVIVIATKADKIPK-GK--WDKHAKVVRQTLNID 166 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCG-GG--HHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCCh-HH--HHHHHHHHHHHHccc
Confidence 5566777777 9999999999988877653 45555553 7999999999999875 22 22222334443432
Q ss_pred -cCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 154 -IETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 154 -~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
..++++|||++|.|++++++++.+.+
T Consensus 167 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 167 PEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 23899999999999999999998754
No 108
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.87 E-value=3.8e-24 Score=200.71 Aligned_cols=161 Identities=20% Similarity=0.329 Sum_probs=118.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
...+||+|+|++|||||||+|+|++..+...+.++.+. .. ....+....+.+.||||||++.+......+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45799999999999999999999988776553222222 22 33344455688999999999999888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
+|||++++.+++.+.. |+..+.... .++|+++|+||+|+... +.+..+ ....+...++. ++++|||++|.|+++
T Consensus 111 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK-KVVDYT-TAKEFADSLGI--PFLETSAKNATNVEQ 185 (199)
T ss_dssp ECC-CCCSHHHHHHHH-HHHHHHSCC-CCSEEEEC-CCSSCC---CCCCSC-C-CHHHHTTTC--CBCCCCC---HHHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhccCCCCEEEEEECccCCcc-ccCCHH-HHHHHHHHcCC--eEEEEECCCCCCHHH
Confidence 9999999999999985 988887754 47999999999999765 333222 22345555552 799999999999999
Q ss_pred HHHHHHHHH
Q 008219 171 VFYYAQKAV 179 (573)
Q Consensus 171 l~~~i~~~~ 179 (573)
+|+++.+.+
T Consensus 186 l~~~l~~~l 194 (199)
T 3l0i_B 186 SFMTMAAEI 194 (199)
T ss_dssp HHHHHTTTT
T ss_pred HHHHHHHHH
Confidence 999987754
No 109
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.87 E-value=3.2e-22 Score=181.64 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=107.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeecccccCCceeEEEEeCCCCccch------hhhHhhhc--
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDR------GKLGEELR-- 85 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~-- 85 (573)
+.++|+++|++|||||||+++|++..+. ..++++... .....+...+..+.+|||||++.+. .....+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVE-KKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCC-CCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCccee-eeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 4689999999999999999999987653 334432111 1122233346789999999998764 23345554
Q ss_pred cCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCC
Q 008219 86 RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (573)
Q Consensus 86 ~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (573)
.+|++++|+|+++.+ ... .|+..+... ++|+++|+||+|+... +.+.. ....+...++ .++++|||++|
T Consensus 81 ~~~~~i~v~D~~~~~---~~~-~~~~~~~~~--~~p~ilv~nK~Dl~~~-~~~~~--~~~~~~~~~~--~~~~~~SA~~~ 149 (165)
T 2wji_A 81 KPDLVVNIVDATALE---RNL-YLTLQLMEM--GANLLLALNKMDLAKS-LGIEI--DVDKLEKILG--VKVVPLSAAKK 149 (165)
T ss_dssp CCSEEEEEEETTCHH---HHH-HHHHHHHHT--TCCEEEEEECHHHHHH-TTCCC--CHHHHHHHHT--SCEEECBGGGT
T ss_pred CCCEEEEEecCCchh---HhH-HHHHHHHhc--CCCEEEEEEchHhccc-cChhh--HHHHHHHHhC--CCEEEEEcCCC
Confidence 899999999988754 333 377777664 7999999999998643 22221 2345556665 28999999999
Q ss_pred CCchhHHHHHHHHH
Q 008219 166 IQVPEVFYYAQKAV 179 (573)
Q Consensus 166 ~gi~~l~~~i~~~~ 179 (573)
.|++++|+.+.+.+
T Consensus 150 ~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 150 MGIEELKKAISIAV 163 (165)
T ss_dssp BSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998753
No 110
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.87 E-value=4.3e-22 Score=187.02 Aligned_cols=145 Identities=14% Similarity=0.281 Sum_probs=116.2
Q ss_pred ccCCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccc
Q 008219 423 QAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAA 502 (573)
Q Consensus 423 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~ 502 (573)
......+||+|+|.+|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++.+..+ +..+++.
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~ 101 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI--TQSYYRS 101 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHH--HHHHHTT
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHH--HHHHHhh
Confidence 33456799999999999999999999999887777777777777777777755678999999999999888 8889999
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCC-ccC
Q 008219 503 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVM-VLY 572 (573)
Q Consensus 503 ~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~ 572 (573)
+|++++|||++++.+|+.+..|+..+...... ++|++||+||+|+...+ +..++++++++.+++ ++|
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 170 (201)
T 2hup_A 102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGS---NIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAI 170 (201)
T ss_dssp CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999988876532 79999999999998654 557788999999988 654
No 111
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=8.9e-22 Score=184.76 Aligned_cols=142 Identities=18% Similarity=0.256 Sum_probs=123.9
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++.+..+ +..+++.+|+
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d~ 101 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI--TQSYYRSANA 101 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HGGGSTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH--HHHHHhcCCE
Confidence 45789999999999999999999999888777788888887778888766678999999999999888 8889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +..++++++++..++++|
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 166 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASN---KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYL 166 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999988776432 79999999999997654 457788889998888775
No 112
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.87 E-value=1e-21 Score=182.47 Aligned_cols=143 Identities=15% Similarity=0.265 Sum_probs=123.6
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
.+..+||+|+|.+|||||||+++|+++.+...+.++.+.++....+...+....+.+|||+|++.+..+ +..+++.+|
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 96 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI--TTAYYRGAM 96 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS--GGGGGTTCS
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh--HHHhccCCC
Confidence 456799999999999999999999999988777788887777777777766778999999999888877 788999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +..++++++++++++++|
T Consensus 97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2gf9_A 97 GFLLMYDIANQESFAAVQDWATQIKTYSWD---NAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFF 162 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEE
Confidence 999999999999999999999888776432 79999999999997654 456788999999988765
No 113
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.87 E-value=7.9e-22 Score=179.36 Aligned_cols=141 Identities=18% Similarity=0.298 Sum_probs=117.6
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++.+..+ +..+++.+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~ 79 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI--TTAYYRGAMGI 79 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC--CHHHHTTEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh--HHHHhccCCEE
Confidence 4589999999999999999999999887777788888888888888866778999999999988877 78889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.+|..+..|+..+...... ++|+++|+||+|+....+..+++++++++++++++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 142 (170)
T 1g16_A 80 ILVYDITDERTFTNIKQWFKTVNEHAND---EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFI 142 (170)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999888776533 79999999999996545667888999999998765
No 114
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.87 E-value=1.3e-21 Score=178.07 Aligned_cols=142 Identities=19% Similarity=0.239 Sum_probs=116.8
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|++|||||||+++|+++.+...+.++.+..+....+..++....+.+|||+|++.+..+ +..+++.+|+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~ 81 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL--GPIYYRDSNG 81 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------CCSSTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhh--HHHHhccCCE
Confidence 45689999999999999999999999887777788887777777888767778999999999999888 8889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +..++++++++.+++++|
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLGN---EICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHY 146 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHGG---GSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999887665322 79999999999997654 556788999999988765
No 115
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.87 E-value=8.9e-22 Score=183.18 Aligned_cols=143 Identities=16% Similarity=0.250 Sum_probs=120.7
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
....+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++.+..+ +..+++.+|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 95 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI--TRSYYRGAA 95 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC--CHHHHTTCS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh--HHHHhccCC
Confidence 456799999999999999999999999988888888888888787888766678999999999988887 788999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +..+++++++++++++++
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 161 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSS---NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFM 161 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999888776433 79999999999997654 557788999999988765
No 116
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.87 E-value=1.1e-21 Score=178.32 Aligned_cols=141 Identities=18% Similarity=0.229 Sum_probs=107.3
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHh-hhccccccccccEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK-LLSNKDSLAACDIA 506 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~-~~~~~~~~~~~d~v 506 (573)
.+||+++|++|||||||+++|.+......+.++.+.......+..++....+.+|||+|++.+.. + ...+++.+|++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~d~~ 79 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWL--QDHCLQTGDAF 79 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC----------CHHHHHCSEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhh--hhhhhccCCEE
Confidence 58999999999999999999998887777767777777777777776677889999999988876 4 66678899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.+|+.+..|+..+....... ++|+++|+||+|+.+.+ +..++++++++.++++++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (169)
T 3q85_A 80 LIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHI 144 (169)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEECCChHHHHHHHHHHHHHHhcccCC--CCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEE
Confidence 99999999999999999999988765433 79999999999998654 667888999999998775
No 117
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.87 E-value=1.2e-21 Score=177.94 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=122.2
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+|+|++|||||||+++|+++.+...+.++.+..+....+...+....+.+|||+|++.+..+ +..+++.+|++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~d~~ 82 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL--APMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--HHHHHTTCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhh--hHHhccCCCEE
Confidence 4689999999999999999999998888777788887777777777766778999999999988887 77889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +..+++.++++.+++++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASP---NIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFM 146 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECccCccccccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999888776433 79999999999997654 456788889998888765
No 118
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.87 E-value=1e-21 Score=186.34 Aligned_cols=141 Identities=13% Similarity=0.207 Sum_probs=119.0
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
....+||+|+|++|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|++.+..+ +..+++++|
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d 100 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNV--RPLCYSDSD 100 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTT--GGGGCTTCS
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHH--HHHHcCCCe
Confidence 345689999999999999999999999988887788776654 45667767778999999999999888 888999999
Q ss_pred EEEEEEeCCChhhHHH-HHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-
Q 008219 505 IAVFVHDSSDESSWKR-ATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM- 569 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~- 569 (573)
++++|||++++.||.. +..|+..+....+ ++|++||+||+|+... .+..+++.++++++++
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 176 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYCP----STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAE 176 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHCT----TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCS
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCC
Confidence 9999999999999999 6899998887754 8999999999999762 3567889999999998
Q ss_pred ccC
Q 008219 570 VLY 572 (573)
Q Consensus 570 ~~~ 572 (573)
+||
T Consensus 177 ~~~ 179 (214)
T 3q3j_B 177 IYL 179 (214)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 119
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.87 E-value=4.7e-22 Score=183.48 Aligned_cols=142 Identities=13% Similarity=0.234 Sum_probs=97.0
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
+..+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++....+.+|||+|++.+..+ +..+++++|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 83 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--TTAYYRGAMG 83 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------CCTTTTTCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh--HHHHHhcCCE
Confidence 45689999999999999999999998877666667776677677777756678999999999999888 8889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +..++++++++++++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 148 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASA---DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFM 148 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999888776432 79999999999997654 557788999999998775
No 120
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.87 E-value=7.3e-22 Score=184.47 Aligned_cols=144 Identities=18% Similarity=0.247 Sum_probs=116.1
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHh-hhccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK-LLSNKDSLAAC 503 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~-~~~~~~~~~~~ 503 (573)
....+||+|+|++|||||||+++|.+........++.+.+.....+.+++....+.+|||+|++.+.. + +..+++.+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~--~~~~~~~~ 97 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWL--RDHCLQTG 97 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHH--HHHHHHHC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhh--HHHhhccC
Confidence 45679999999999999999999987655444445556566666677776667889999999987654 5 56778999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 504 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 504 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|++++|||++++.||..+..|+..+....... ++|+++|+||+|+...+ +..++++++++.+++++|
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~ 165 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHI 165 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTS--CCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEE
Confidence 99999999999999999999999887754322 79999999999997654 557788899999888765
No 121
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.87 E-value=5.5e-21 Score=191.24 Aligned_cols=164 Identities=18% Similarity=0.164 Sum_probs=124.1
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeecccccCC-ceeEEEEeCCCCccch----------
Q 008219 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN--VPPVLPPTRLPEDFYPD-RVPITIIDTPSSVEDR---------- 77 (573)
Q Consensus 11 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~---------- 77 (573)
....+.-.|+|+|+||||||||+|+|++..+... .+++... .....+... +..+.||||||+....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~-~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRM-RVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS-CEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceee-EEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 3456678999999999999999999999886533 3332111 123333444 7899999999986644
Q ss_pred hhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeE
Q 008219 78 GKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETC 157 (573)
Q Consensus 78 ~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (573)
.....+++.+|++++|+|++++.+..... .|+..++.. ++|+++|+||+|+... . ....+....+...++...++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~-~~~~~l~~~--~~pvilV~NK~Dl~~~-~-~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEE-IYQNFIKPL--NKPVIVVINKIDKIGP-A-KNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHTGGG--CCCEEEEEECGGGSSS-G-GGGHHHHHHHHHHCTTCCCE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHH-HHHHHHHhc--CCCEEEEEECccCCCC-H-HHHHHHHHHHHHhccCCCeE
Confidence 34557899999999999999998888766 378888775 7999999999999732 1 23344455666666544589
Q ss_pred EEecCCCCCCchhHHHHHHHHHh
Q 008219 158 IECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 158 ~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
++|||++|.|++++++.+.+.+.
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEEeCCCCCCHHHHHHHHHHhCc
Confidence 99999999999999999998764
No 122
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.87 E-value=2.5e-21 Score=178.07 Aligned_cols=143 Identities=17% Similarity=0.201 Sum_probs=124.0
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
....+||+|+|.+|||||||+++|++..+...+.++.+..+....+...+....+.+|||+|++.+..+ +..+++.+|
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 86 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL--APMYYRGAA 86 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGG--THHHHTTCS
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhh--hHHHhccCC
Confidence 345689999999999999999999999988877788888887777777766778999999999988888 888899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +..++++++++.+++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNP---NMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFM 152 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999988876533 79999999999997654 457788999999888765
No 123
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.87 E-value=3.2e-21 Score=181.18 Aligned_cols=142 Identities=14% Similarity=0.259 Sum_probs=123.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|.+|||||||+++|++..+...+.++.+..+....+...+....+.+|||+|.+.+..+ +..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 83 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTI--TTAYYRGAMG 83 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHTTGGGCSE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcch--HHHhhcCCCE
Confidence 45689999999999999999999999988777788887777777777766779999999999998888 8889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +..++++++++.+++++|
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWD---NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFF 148 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCS---SCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEE
Confidence 99999999999999999999888776432 79999999999997654 456788899999988765
No 124
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.87 E-value=2.4e-21 Score=185.73 Aligned_cols=165 Identities=13% Similarity=0.119 Sum_probs=112.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeecccccCCceeEEEEeCCCCccc---------hhhhHhh
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVED---------RGKLGEE 83 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~ 83 (573)
.+.+||+|+|++|||||||+|+|++..+... .+++.... ....+...+..+.||||||+... ......+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 105 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL-YVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL 105 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE-EEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceee-eeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence 4679999999999999999999998876422 22211111 11222335688999999998321 1122345
Q ss_pred hccCCEEEEEEeCCCcccHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHH--HHHHHHHHHhcccCeEEEe
Q 008219 84 LRRADAVVLTYACDRPETLDEL-STFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLE--QVMMPIMQQFREIETCIEC 160 (573)
Q Consensus 84 ~~~ad~il~v~D~~~~~s~~~~-~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 160 (573)
+..+|++|+|||++++.++... ...|+..++...+++|+++|+||+|+... +.+... +....+....+...++++|
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM-DSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc-hhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 7889999999999999887522 12477777665568999999999999765 333322 2233444444311389999
Q ss_pred cCCCCCCchhHHHHHHHHHh
Q 008219 161 SALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 161 Sa~~~~gi~~l~~~i~~~~~ 180 (573)
||++|.||+++|+.+.+.+.
T Consensus 185 SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLK 204 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 125
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.87 E-value=1.5e-21 Score=179.83 Aligned_cols=141 Identities=13% Similarity=0.225 Sum_probs=118.5
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+..++....+.+|||+|++.+..+ ...+++.+|++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~ 81 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIF--PQTYSIDINGY 81 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCC--CGGGTTTCSEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHH--HHHHHhcCCEE
Confidence 468999999999999999999998888777777777655 455666756678899999999988877 88899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.+|+.+..|+..+....... ++|+++|+||+|+...+ +..++++++++.+++++|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKV--QIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFL 146 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccchhcceecHHHHHHHHHHhCCcEE
Confidence 99999999999999999998887664433 79999999999997654 567889999999998875
No 126
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=181.49 Aligned_cols=142 Identities=20% Similarity=0.327 Sum_probs=125.1
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
+..+||+|+|.+|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++.+..+ +..+++.+|+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 91 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAHG 91 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTT--HHHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhh--HHHHHhhCCE
Confidence 46789999999999999999999999988888888888888888888866678999999999988887 7788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +...+++++++.++++++
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 156 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFL 156 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccccCHHHHHHHHHHcCCcEE
Confidence 99999999999999999999988776543 79999999999997655 456788999999998876
No 127
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=2.4e-21 Score=180.41 Aligned_cols=142 Identities=18% Similarity=0.258 Sum_probs=123.8
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|.+|||||||+++|+++.+...+.++.+..+....+...+....+.+|||+|.+.+..+ +..+++.+|+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 98 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL--APMYYRGSAA 98 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGG--THHHHTTCSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhh--hHHhhccCCE
Confidence 45689999999999999999999999887777788887777777777767789999999999998888 8889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +..++++++++++++++|
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 163 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPE---NIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVV 163 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999988776533 79999999999997644 557788999999888765
No 128
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.86 E-value=2.1e-21 Score=179.53 Aligned_cols=142 Identities=18% Similarity=0.310 Sum_probs=122.9
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
+..+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++.+..+ +..+++.+|+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 85 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV--TRSYYRGAAG 85 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHTTSTTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHHhcCCE
Confidence 45689999999999999999999999988888788887777777777755678999999999998888 7889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +...++.++++.++++++
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQ---NIVIILCGNKKDLDADREVTFLEASRFAQENELMFL 150 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999887765432 89999999999997644 556788899999888765
No 129
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=2.1e-21 Score=208.05 Aligned_cols=156 Identities=13% Similarity=0.147 Sum_probs=122.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
++.+||+|+|++|||||||+|+|++..++...++ .+.. ...+..+++.+.||||||++.+...+..+++.+|++|+|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T-~~~~--~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V 396 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPT-VGFN--VETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 396 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCC-SSEE--EEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCc-ccee--EEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 5679999999999999999999999887765553 2222 233456778999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHH-Hhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc------cCeEEEecCCCC
Q 008219 94 YACDRPETLDELSTFWLPEL-RRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE------IETCIECSALKQ 165 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l-~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~ 165 (573)
||++++.++..+.. |+..+ +.. ..++|+|||+||+|+... ...++ +...++. ..++++|||++|
T Consensus 397 ~D~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~Dl~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~SA~~g 468 (497)
T 3lvq_E 397 VDCADRDRIDEARQ-ELHRIINDREMRDAIILIFANKQDLPDA---MKPHE----IQEKLGLTRIRDRNWYVQPSCATSG 468 (497)
T ss_dssp EETTCGGGHHHHHH-HHHHHHTSGGGTTCEEEEEEECCSSSSC---CCHHH----HHHHTTCTTCCSSCEEEEECBTTTT
T ss_pred EECcchhHHHHHHH-HHHHHhhhhhcCCCcEEEEEECCCCCcC---CCHHH----HHHHhchhhhhcCCeEEEEEECCCC
Confidence 99999999999986 55444 332 258999999999999765 22222 2222221 126999999999
Q ss_pred CCchhHHHHHHHHHh
Q 008219 166 IQVPEVFYYAQKAVL 180 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~ 180 (573)
.||+++|+++.+.+.
T Consensus 469 ~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 469 DGLYEGLTWLTSNYK 483 (497)
T ss_dssp BTHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998753
No 130
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=182.94 Aligned_cols=143 Identities=17% Similarity=0.224 Sum_probs=116.8
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
....+||+|+|.+|||||||+++|+++.+...+.++.+..+ ...+...+....+.+|||+|.+.+..+ +..+++.+|
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 97 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSIL--PYSFIIGVH 97 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCC--CGGGTTTCC
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHH--HHHHHhcCC
Confidence 35679999999999999999999999998877777777655 455556656778899999999988888 888999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|+.+..|+..+....... ++|+++|+||+|+...+ +...+++++++.+++++|
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 164 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKT--RVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFM 164 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccCccccccCHHHHHHHHHHhCCeEE
Confidence 9999999999999999999999987764333 79999999999997655 557888999999998876
No 131
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.86 E-value=1.6e-21 Score=176.89 Aligned_cols=141 Identities=16% Similarity=0.248 Sum_probs=122.3
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
+..+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++.+..+ ...+++.+|+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 80 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI--TKAYYRGAQA 80 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC--CHHHHTTCCE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH--HHHHhcCCCE
Confidence 35689999999999999999999999888787888888888787877766778999999999988887 7888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|+.+..|+..+..... +.|+++|+||+|+...+ +..++++++++++++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T 1z2a_A 81 CVLVFSTTDRESFEAISSWREKVVAEVG----DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFY 144 (168)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHC----SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999988876652 79999999999997654 456788899999888765
No 132
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.86 E-value=3.7e-21 Score=174.86 Aligned_cols=141 Identities=17% Similarity=0.240 Sum_probs=122.0
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
+.+||+|+|.+|||||||+++|+++.+...+.++.+..+....+...+....+.+|||+|.+.+..+ ...+++.+|++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~~~~ 82 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRAL--APMYYRGSAAA 82 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--THHHHTTCSEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcc--cHhhCcCCCEE
Confidence 4589999999999999999999999887777788887777777777766778999999999988887 78889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.+++.+..|+..+...... ++|+++|+||+|+...+ +..++++++++.+++++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~---~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 146 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPP---SIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFV 146 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCT---TSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECCccccccccCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999888776433 79999999999997654 457788889998888765
No 133
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.86 E-value=1.5e-21 Score=180.11 Aligned_cols=143 Identities=19% Similarity=0.277 Sum_probs=120.9
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
..+.+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+..++....+.+|||+|++.+..+ ...+++.+|
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d 91 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAM--REQYMRTGD 91 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSS--HHHHHHHCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHH--HHHHHhcCC
Confidence 34679999999999999999999999888877777777655 556666656667889999999988887 778899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|+.+..|+..+....... ++|+++|+||+|+...+ +..++++++++++++++|
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 158 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRE--SFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYI 158 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSS--CCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEE
Confidence 9999999999999999999998887643322 89999999999997654 567889999999998876
No 134
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.86 E-value=3.4e-21 Score=181.45 Aligned_cols=142 Identities=20% Similarity=0.294 Sum_probs=124.6
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|++|||||||+++|.++.+...+.++.+.++....+..++....+.+|||+|++.+..+ +..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 83 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI--TSSYYRGSHG 83 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC--CGGGGTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH--HHHhccCCCE
Confidence 45689999999999999999999999988888888888888888888766678999999999988888 8889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|..+..|+..+...... ++|+++|+||+|+...+ +..+++.++++.+++++|
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATS---TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFL 148 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999888776533 79999999999997654 556788889999888775
No 135
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.86 E-value=2.8e-21 Score=177.32 Aligned_cols=142 Identities=15% Similarity=0.287 Sum_probs=122.8
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|.+|||||||+++|+++.+...+.++.+..+....+...+....+.+|||+|++.+..+ +..+++.+|+
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 90 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV--TRSYYRGAAG 90 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHH--HHHHHHTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhh--HHHHhccCCE
Confidence 45789999999999999999999999888777778777777777777766678999999999988887 7788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+++.+..|+..+...... ++|+++|+||+|+...+ +..++++++++++++++|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFL 155 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999888776533 79999999999997654 456788999999988765
No 136
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=5.1e-22 Score=184.82 Aligned_cols=143 Identities=14% Similarity=0.241 Sum_probs=125.7
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
.+..+||+|+|.+|||||||+++|+++.+...+.++.+.++....+...+....+.+|||+|++.+..+ +..+++.+|
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 97 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTI--TTAYYRGAM 97 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHH--HHHHHTTCC
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHH--HHHHHccCC
Confidence 346799999999999999999999999888777778888888888887777889999999999998888 888899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +..++++++++.+++++|
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 163 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTYSWD---NAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFF 163 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEE
Confidence 999999999999999999999998876533 89999999999997655 557788999999998776
No 137
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=182.59 Aligned_cols=143 Identities=18% Similarity=0.307 Sum_probs=114.1
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
.+..+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|.+.+..+ +..+++.+|
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d 99 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV--TRSYYRGAA 99 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC--CHHHHTTCS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH--HHHHhccCC
Confidence 356799999999999999999999999988888888888887777877766678999999999998887 888999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +...++.++++.+++++|
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 165 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASP---NIVVILCGNKKDLDPEREVTFLEASRFAQENELMFL 165 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999888765432 79999999999997654 556788899999888775
No 138
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=180.81 Aligned_cols=143 Identities=17% Similarity=0.209 Sum_probs=123.3
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
....+||+|+|.+|||||||+++|++..+...+.++.+..+....+...+....+.+|||+|.+.+..+ +..+++.+|
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 99 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI--TSAYYRGAV 99 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT--HHHHHTTCC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh--hHHHhccCC
Confidence 456799999999999999999999999988888788787777777777766778999999999888877 778899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|..+..|+..+...... ++|+++|+||+|+...+ +..++++++++.+++++|
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHAEA---TIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFL 165 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999888775432 79999999999997654 557788899998888765
No 139
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=3.3e-21 Score=175.15 Aligned_cols=140 Identities=18% Similarity=0.236 Sum_probs=120.6
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.+||+++|++|||||||+++|+++.+...+.++.+..+....+..++....+.+|||+|++.+..+ +..+++.+|+++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~d~~i 80 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL--APXYYRNAQAAL 80 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--HHHHHTTCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhh--hhhhhccCcEEE
Confidence 589999999999999999999999888777788887777777777766678999999999988887 778899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc----ccchhhHHHHHHHcCCccC
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF----AMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~ 572 (573)
+|||++++.+|..+..|+..+...... ++|+++|+||+|+... .+..++++++++.++++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~ 146 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQASK---DIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFF 146 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCT---TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999888776532 7999999999999754 2456778889998888765
No 140
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=181.11 Aligned_cols=143 Identities=14% Similarity=0.265 Sum_probs=115.3
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
....+||+|+|.+|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|.+.+..+ +..+++.+|
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d 100 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI--TSAYYRSAK 100 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHH--HHHHHHHCS
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHH--HHHHhcCCC
Confidence 456789999999999999999999999988777788887787787887756678999999999998888 788899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHc-CCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFL-VMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~-~~~~~ 572 (573)
++++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +..++++++++++ ++++|
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~---~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 167 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASE---DAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFC 167 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEE
Confidence 999999999999999999998887766443 79999999999997654 4567788888875 56554
No 141
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.86 E-value=3.8e-21 Score=202.34 Aligned_cols=205 Identities=19% Similarity=0.167 Sum_probs=125.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhh--------Hhh
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADT--FPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKL--------GEE 83 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~ 83 (573)
+..+||+|+|++|||||||+|+|++.. ++..++++.... ....+..+++.+.||||||+..+.... ..+
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~-~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDY-IEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEE-EEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 457899999999999999999999875 344455532211 223344567899999999987765433 346
Q ss_pred hccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 84 ~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
++.+|++++|+|++++.++..+.. +...++... ++|+++|+||+|+... ... . ...+... + ..++++|||+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l~-~~piIvV~NK~Dl~~~-~~~--~--~~~l~~~-~-~~~~i~vSAk 380 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTE-IRELKAAHP-AAKFLTVANKLDRAAN-ADA--L--IRAIADG-T-GTEVIGISAL 380 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHCT-TSEEEEEEECTTSCTT-THH--H--HHHHHHH-H-TSCEEECBTT
T ss_pred cccCCEEEEEEECCCCcchhhhHH-HHHHHHhcC-CCCEEEEEECcCCCCc-cch--h--HHHHHhc-C-CCceEEEEEC
Confidence 899999999999999988865432 444444433 7999999999999876 211 1 1222222 1 1389999999
Q ss_pred CCCCchhHHHHHHHHHh-CCC----CCCcchhhh-hchhhHHHHHHHHHHhccCCCCCccCchhhhHHhhh
Q 008219 164 KQIQVPEVFYYAQKAVL-HPT----GPLFDQESQ-ALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVK 228 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~~~-~~~----~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~ 228 (573)
+|.|++++++.+.+.+. .+. .+.....++ ....++...+++.........+..+..++++.....
T Consensus 381 tg~GI~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~dl~a~~lr~a~~~ 451 (476)
T 3gee_A 381 NGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALELIAHESETELIAFELRAALDY 451 (476)
T ss_dssp TTBSHHHHHHHHTHHHHSSCCCCTTSCCCCSHHHHHHHHHHHHHHHHHHTTTTTTCCSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999876 332 122222222 244566777777666655555566666766665544
No 142
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.86 E-value=3.9e-21 Score=178.99 Aligned_cols=166 Identities=16% Similarity=0.170 Sum_probs=111.7
Q ss_pred cCCCCCCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCC----------Cccc
Q 008219 7 ANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPS----------SVED 76 (573)
Q Consensus 7 ~~~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~ 76 (573)
..........+||+|+|++|||||||+|+|++..+....+ +.+.+. .......+..+.+||||| .+.+
T Consensus 14 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~t~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 91 (195)
T 3pqc_A 14 TPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSK-TPGKTR-SINFYLVNSKYYFVDLPGYGYAKVSKKERMLW 91 (195)
T ss_dssp STTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCS-SCCCCC-CEEEEEETTTEEEEECCCBSSSCCCHHHHHHH
T ss_pred ChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccC-CCCCcc-CeEEEEECCcEEEEECCCCccccCChhhHHHH
Confidence 3444455678999999999999999999999987433322 222222 111222234688999999 3344
Q ss_pred hhhhHhhhccC---CEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc
Q 008219 77 RGKLGEELRRA---DAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE 153 (573)
Q Consensus 77 ~~~~~~~~~~a---d~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 153 (573)
......+++.+ |++++|+|+++..+..... +...+... ++|+++|+||+|+..........+........++.
T Consensus 92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence 45555666665 9999999988765554432 45555554 79999999999998652111112222233333232
Q ss_pred cCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 154 IETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 154 ~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
.++++|||++|.|++++|+++.+.+
T Consensus 168 -~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 168 -YTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp -SCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -CceEEEecCCCCCHHHHHHHHHHHh
Confidence 3899999999999999999998865
No 143
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=6.9e-21 Score=175.00 Aligned_cols=142 Identities=16% Similarity=0.264 Sum_probs=113.1
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCC-CCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
+..+||+|+|.+|||||||+++|+++.+.. .+.++.+..+....+..++....+.+|||+|++.+..+ +..+++.+|
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d 85 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV--THAYYRDAH 85 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------CCGGGCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHccCCC
Confidence 457899999999999999999999988753 45567776666666667755678999999999999888 888999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +..++++++++.++++++
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQH---DVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFM 151 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEE
Confidence 999999999999999999999888776432 79999999999998654 456788889999888765
No 144
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.86 E-value=1.3e-21 Score=178.83 Aligned_cols=152 Identities=24% Similarity=0.282 Sum_probs=108.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhh--------hHhh
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGK--------LGEE 83 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~ 83 (573)
++.+||+|+|++|||||||+|+|++..+ +..++++.... ....+..++..+.+|||||+..+... ...+
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV-LREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSC-EEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceece-eeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3568999999999999999999998764 33344432111 22233344567999999998754321 1246
Q ss_pred hccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecC
Q 008219 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (573)
Q Consensus 84 ~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (573)
++.+|++++|+|++++.++... .|+..+.... .++|+++|+||+|+....... .. .. ..++++|||
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~--~~-------~~--~~~~~~~SA 147 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKADITGETLGM--SE-------VN--GHALIRLSA 147 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE--EE-------ET--TEEEEECCT
T ss_pred HHhCCEEEEEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECccCCcchhhh--hh-------cc--CCceEEEeC
Confidence 8999999999999999888743 3777776543 479999999999986431110 00 01 127999999
Q ss_pred CCCCCchhHHHHHHHHH
Q 008219 163 LKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 163 ~~~~gi~~l~~~i~~~~ 179 (573)
++|.|++++|+.+.+.+
T Consensus 148 ~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 148 RTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TTCTTHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998754
No 145
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.86 E-value=2.9e-21 Score=193.31 Aligned_cols=163 Identities=13% Similarity=0.187 Sum_probs=120.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCC-CCCCeeecccccCCceeEEEEeCCCCccc-----hhhhHhhhcc
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADT--FPANVPP-VLPPTRLPEDFYPDRVPITIIDTPSSVED-----RGKLGEELRR 86 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----~~~~~~~~~~ 86 (573)
..+||+++|++|||||||+++|+++. +....++ |.+.......+ .+++.+.||||||++.+ ......+++.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE-TTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe-CCceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 46899999999999999999999873 3332332 22222222222 34789999999999887 5677888999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHH---HHHHHhcCCCCcEEEEEeCCCCCCCcccc----cHHHHHHHHHHHhcc-cCeEE
Q 008219 87 ADAVVLTYACDRPETLDELSTFW---LPELRRLEVKVPVIVVGCKLDLRDENQQV----SLEQVMMPIMQQFRE-IETCI 158 (573)
Q Consensus 87 ad~il~v~D~~~~~s~~~~~~~~---~~~l~~~~~~~piilv~NK~D~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~ 158 (573)
+|++|+|||++++.+++++.. | +..++...+++|+++|+||+|+....... ...+....++..++. ..+++
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred CCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 999999999999999998863 5 44445556789999999999998731111 222344566666652 13899
Q ss_pred EecCCCCCCchhHHHHHHHHHh
Q 008219 159 ECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 159 ~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
+|||++ .|+.++|..++..+.
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTTC
T ss_pred EeeecC-ChHHHHHHHHHHHHc
Confidence 999999 899999998887643
No 146
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=8.1e-21 Score=179.12 Aligned_cols=143 Identities=17% Similarity=0.258 Sum_probs=111.7
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCC-CCCCCCcccEEEEEEEcCCCeEEEEEEecCChhH-HHhhhccccccccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA-VAKLLSNKDSLAAC 503 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~-~~~~~~~~~~~~~~ 503 (573)
...+||+|+|++|||||||+++|++..... ...++.+.++..+.+.+++....+.+|||+|.+. +..+ ...+++.+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l--~~~~~~~a 112 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL--HDHCMQVG 112 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHH--HHCCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhH--HHHHHhhC
Confidence 456899999999999999999999754422 2223455556666677776666888999999876 4555 66788999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 504 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 504 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
|++++|||++++.||+.+..|+..+....... ++|++|||||+||...+ +..++++.+++.++++||
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~--~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~ 180 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTE--DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFI 180 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGT--TSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEE
Confidence 99999999999999999999988877542222 79999999999997654 556778888988888775
No 147
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.86 E-value=5.6e-21 Score=174.64 Aligned_cols=141 Identities=18% Similarity=0.263 Sum_probs=105.9
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhH--HHhhhcccccccccc
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA--VAKLLSNKDSLAACD 504 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~--~~~~~~~~~~~~~~d 504 (573)
..+||+|+|++|||||||+++|.+..+...+. +.+.+.....+..++....+.+|||+|.+. +..+ ...+++.+|
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--~~~~~~~~~ 79 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWS--QESCLQGGS 79 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHH--HHHTTTSCS
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhh--HHhhcccCC
Confidence 46899999999999999999999998876654 444455556677775667889999999887 4455 567789999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|+.+..|+..+....... ++|+++|+||+|+...+ +..++++.+++.+++++|
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 146 (175)
T 2nzj_A 80 AYVIVYSIADRGSFESASELRIQLRRTHQAD--HVPIILVGNKADLARCREVSVEEGRACAVVFDCKFI 146 (175)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHCC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhccC--CCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999998887753322 79999999999997654 556778889988888765
No 148
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=3.2e-21 Score=179.67 Aligned_cols=142 Identities=16% Similarity=0.271 Sum_probs=123.3
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
+.+||+|+|.+|||||||+++|++..+...+.++.+..+....+...+....+.+|||+|++.+..+ +..+++.+|++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~i 91 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL--TPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS--HHHHHTTCCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh--hHHHhccCCEE
Confidence 4589999999999999999999999888777788887777777777766788999999999988877 77889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.+|..+..|+..+....... ++|+++|+||+|+....+..+++.++++++++++|
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRN--DIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFI 155 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCS--CCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcC--CCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999987764333 79999999999996655667788899999888765
No 149
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.86 E-value=3e-21 Score=184.23 Aligned_cols=169 Identities=14% Similarity=0.057 Sum_probs=113.4
Q ss_pred CCCCCCcceEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCCCCCeeeccccc-CCceeEEEEeCCCCcc---------
Q 008219 9 SGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTF---PANVPPVLPPTRLPEDFY-PDRVPITIIDTPSSVE--------- 75 (573)
Q Consensus 9 ~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~--------- 75 (573)
........++|+|+|++|||||||+|+|++..+ ....+++.... ....+. ..+..+.||||||...
T Consensus 22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 100 (223)
T 4dhe_A 22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI-NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKA 100 (223)
T ss_dssp GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE-EEEEESCTTSCSEEEEECCCCCSSCCCSTHHH
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce-EEEEecCCCCCcEEEEcCCCCCcccCChhhHH
Confidence 334455689999999999999999999999863 33344322221 122233 5568899999999643
Q ss_pred -chhhhHhhhcc---CCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHh
Q 008219 76 -DRGKLGEELRR---ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF 151 (573)
Q Consensus 76 -~~~~~~~~~~~---ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~ 151 (573)
+......+++. +|++++|+|+++..+... ..|+..++.. ++|+++|+||+|+..........+........+
T Consensus 101 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 101 HWEQLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 23444455555 888999999887654333 3477777764 799999999999987511111111112222222
Q ss_pred -----cccCeEEEecCCCCCCchhHHHHHHHHHhCC
Q 008219 152 -----REIETCIECSALKQIQVPEVFYYAQKAVLHP 182 (573)
Q Consensus 152 -----~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 182 (573)
....++++|||++|.|++++++.+.+.+..+
T Consensus 177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 1234899999999999999999999876543
No 150
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.86 E-value=1.8e-20 Score=202.12 Aligned_cols=163 Identities=17% Similarity=0.169 Sum_probs=114.8
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee--------cccc--cCCceeEEEEeCCCCccchhhhH
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL--------PEDF--YPDRVPITIIDTPSSVEDRGKLG 81 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~i~Dt~G~~~~~~~~~ 81 (573)
...+.+||+++|++|||||||+++|++..+...+.++.+.... .+.+ ...++.+.+|||||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 4567899999999999999999999998887665554443321 2222 23478999999999999999899
Q ss_pred hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEec
Q 008219 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (573)
Q Consensus 82 ~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (573)
.+++.+|++|+|+|+++. +... .|+..+....+++|+++|+||+|+... +.+..++ .......++ .++++||
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~-~~~~~l~~~~~~~pvilV~NK~Dl~~~-~~v~~~~-~~~~~~~~~--~~~~~vS 188 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKH-YWLRHIEKYGGKSPVIVVMNKIDENPS-YNIEQKK-INERFPAIE--NRFHRIS 188 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHH-HHHHHHHHHSSSCCEEEEECCTTTCTT-CCCCHHH-HHHHCGGGT--TCEEECC
T ss_pred HHccCCcEEEEEEeCCCc---hhHH-HHHHHHHHhCCCCCEEEEEECCCcccc-cccCHHH-HHHHHHhcC--CceEEEe
Confidence 999999999999998765 4444 499999888778999999999999865 3333332 233333333 2699999
Q ss_pred CCCCCCchhHHHHHHHHHhCC
Q 008219 162 ALKQIQVPEVFYYAQKAVLHP 182 (573)
Q Consensus 162 a~~~~gi~~l~~~i~~~~~~~ 182 (573)
|++|.||+++++.+.+.+...
T Consensus 189 A~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp C-----CTTHHHHHHHHHTCT
T ss_pred cCcccCHHHHHHHHHHHHhcc
Confidence 999999999999999987654
No 151
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.86 E-value=4.2e-21 Score=173.99 Aligned_cols=139 Identities=20% Similarity=0.278 Sum_probs=95.8
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.+||+++|++|||||||+++|.+....... ++.++.+ ...+..++....+.+|||+|++.+..+ ...+++.+|+++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~~i 77 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWL--PGHCMAMGDAYV 77 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC-----------------CCEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhh--hhhhhhhCCEEE
Confidence 479999999999999999999987765444 3333333 244566666778999999999999888 888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+|||++++.+|+.+..|+..+....... ++|+++|+||+|+...+ +..++++++++.+++++|
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (166)
T 3q72_A 78 IVYSVTDKGSFEKASELRVQLRRARQTD--DVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFI 141 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEeccccccccccCHHHHHHHHHHhCCcEE
Confidence 9999999999999999999988764333 89999999999997654 567788899999998775
No 152
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.1e-21 Score=184.20 Aligned_cols=142 Identities=20% Similarity=0.268 Sum_probs=117.4
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|++|||||||+++|++..+...+.++.+.++....+..++....+.+|||+|++.+..+ +..+++.+|+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 88 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI--TSAYYRGAVG 88 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC--CGGGTTTCCE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh--HHHHhccCCE
Confidence 45689999999999999999999999988888888888888887888766678999999999998888 8889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|+.+..|+..+...... ++|++||+||+|+...+ +..+++.++++.+++++|
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~---~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 153 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADD---NVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFT 153 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC-----CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999888776432 79999999999997654 556788899999888765
No 153
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.85 E-value=3.5e-21 Score=176.61 Aligned_cols=142 Identities=18% Similarity=0.282 Sum_probs=122.0
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|.+.+..+ ...+++.+|+
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~ 89 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--IPSYIRDSTV 89 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG--SHHHHHTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHH--HHHHhcCCCE
Confidence 34589999999999999999999998888777788887777777777766678999999999988888 7888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +..++++++++.++++++
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERGS---DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFI 154 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTT---SSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999888765432 79999999999997654 456788889988888765
No 154
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.85 E-value=1e-20 Score=175.90 Aligned_cols=143 Identities=12% Similarity=0.191 Sum_probs=121.4
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEE-EEEEEcCCC---------eEEEEEEecCChhHHHhhhc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYA-VNVVDQPGG---------TKKTVVLREIPEEAVAKLLS 495 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~dt~G~~~~~~~~~ 495 (573)
...+||+|+|++|||||||+++|+++.+...+.++.+.++. ...+...+. ...+.+|||+|.+.+..+
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-- 86 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL-- 86 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH--
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH--
Confidence 45689999999999999999999998887777777777666 566666644 578999999999998888
Q ss_pred cccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 496 NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 496 ~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+..+++.+|++++|||++++.++..+..|+..+....... ++|+++|+||+|+...+ +..++++++++.+++++|
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE--NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSS--SCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 7888999999999999999999999999999887765322 89999999999997654 456788899999888765
No 155
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.85 E-value=5.4e-21 Score=176.73 Aligned_cols=140 Identities=17% Similarity=0.222 Sum_probs=116.7
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|++|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|++.+..+ ...+++.+|+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~ 81 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDA 81 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTT--GGGGCTTCSE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhh--HHhhcCCCcE
Confidence 45689999999999999999999999887777777765554 44666666778999999999998887 7888999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcC-Cc
Q 008219 506 AVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLV-MV 570 (573)
Q Consensus 506 vilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~-~~ 570 (573)
+++|||++++.+|+.+ ..|+..+....+ ++|+++|+||+|+..+ .+..+++++++++++ ++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 157 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC----CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence 9999999999999998 688888876643 7999999999999742 245678899999887 56
Q ss_pred cC
Q 008219 571 LY 572 (573)
Q Consensus 571 ~~ 572 (573)
||
T Consensus 158 ~~ 159 (184)
T 1m7b_A 158 YI 159 (184)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 156
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=4.9e-21 Score=181.22 Aligned_cols=143 Identities=18% Similarity=0.286 Sum_probs=122.1
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
.+..+||+|+|++|||||||+++|++..+...+.++.+.++....+..++....+.+|||+|.+.+..+ +..+++.+|
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 94 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI--TTAYYRGAM 94 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC--CHHHHTTCS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH--HHHHhccCC
Confidence 345689999999999999999999998887777788888888787888755678999999999988887 788899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|+.+..|+..+...... ++|+++|+||+|+....+..++++++++.+++++|
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 159 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHAND---EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFI 159 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTTT---CSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999888776543 79999999999996544667788889999988765
No 157
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.85 E-value=4.7e-21 Score=177.67 Aligned_cols=144 Identities=16% Similarity=0.238 Sum_probs=113.3
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
....+||+|+|++|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|++.+..+ ..+++.+|
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~---~~~~~~~~ 93 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC---ERYLNWAH 93 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT---HHHHTTCS
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH---HHHHhhCC
Confidence 345689999999999999999999999887777777765553 34555656678899999999877654 35789999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|+.+..|+..+.........++|++||+||+|+...+ +..+++++++++++++||
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 162 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFF 162 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEE
Confidence 99999999999999999999988876521000179999999999997654 557889999999998875
No 158
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.85 E-value=6e-21 Score=172.74 Aligned_cols=140 Identities=17% Similarity=0.251 Sum_probs=117.2
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.+||+++|++|||||||+++|+++.+...+.++.+... ...+...+....+.+|||+|++.+..+ ...+++.+|+++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~~~~i 79 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASM--RDLYIKNGQGFI 79 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCSEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHH--HHHHhccCCEEE
Confidence 58999999999999999999999888777766665444 455666656678999999999888887 778889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+|||++++.+|+.+..|+..+....... ++|+++|+||+|+...+ +..++++++++++++++|
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYE--KVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFM 143 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEE
Confidence 9999999999999999998887754333 89999999999997654 456788889999888765
No 159
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.85 E-value=7.2e-21 Score=177.41 Aligned_cols=141 Identities=20% Similarity=0.260 Sum_probs=118.1
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
....+||+++|++|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|++.+..+ +..+++++|
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 96 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRL--RPLSYADSD 96 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTT--GGGGCTTCS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHH--hHhhccCCc
Confidence 456799999999999999999999999987777777766555 34556656677899999999999888 888999999
Q ss_pred EEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc---ccchhhHHHHHHHcCCc-cC
Q 008219 505 IAVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF---AMAIQDSTRVFTFLVMV-LY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~-~~ 572 (573)
++++|||++++.+|..+ ..|+..+..... ++|+++|+||+|+... .+..++++++++.+++. ++
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYID----TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYI 165 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCT----TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEE
Confidence 99999999999999997 678877776643 7999999999999753 35578899999999987 54
No 160
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.85 E-value=2.3e-21 Score=188.84 Aligned_cols=165 Identities=18% Similarity=0.142 Sum_probs=113.0
Q ss_pred CCCCCCcceEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCCCCCC-CCee--eccc--------------cc
Q 008219 9 SGPGGKTGVRIVVCGEK---------GTGKSSLIVTAAA---DTFPANVPPVL-PPTR--LPED--------------FY 59 (573)
Q Consensus 9 ~~~~~~~~~kI~ivG~~---------~vGKSSLin~l~~---~~~~~~~~~~~-~~~~--~~~~--------------~~ 59 (573)
........+||+|+|++ |||||||+++|++ ..+...+.++. +... ..+. ++
T Consensus 12 ~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (255)
T 3c5h_A 12 ENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLED 91 (255)
T ss_dssp TTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-----
T ss_pred CCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccC
Confidence 33445678999999999 9999999999998 44544433321 0000 1111 23
Q ss_pred CCceeEEEEe-----------------------CCCCccchhhhHhhhc---------------------cCCEEEEEEe
Q 008219 60 PDRVPITIID-----------------------TPSSVEDRGKLGEELR---------------------RADAVVLTYA 95 (573)
Q Consensus 60 ~~~~~~~i~D-----------------------t~G~~~~~~~~~~~~~---------------------~ad~il~v~D 95 (573)
...+.+.||| ++|++.+......+++ .+|++|+|||
T Consensus 92 ~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D 171 (255)
T 3c5h_A 92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID 171 (255)
T ss_dssp ----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE
T ss_pred CcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE
Confidence 4668899999 5555555555555555 7999999999
Q ss_pred CCCc--ccHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 96 CDRP--ETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 96 ~~~~--~s~~~~~~~~~~~l~~~--~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
++++ .+++.+.. |+..+... ..++|++||+||+|+... +.+ + ....+...... .++++|||++|.|++++
T Consensus 172 ~t~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~-~~v--~-~~~~~~~~~~~-~~~~e~SAk~g~gv~el 245 (255)
T 3c5h_A 172 VSRGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVE-RYI--R-DAHTFALSKKN-LQVVETSARSNVNVDLA 245 (255)
T ss_dssp CBC----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCH-HHH--H-HHHHHHHTSSS-CCEEECBTTTTBSHHHH
T ss_pred CCCCchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEccccccc-HHH--H-HHHHHHHhcCC-CeEEEEECCCCCCHHHH
Confidence 9998 99999885 88877653 258999999999999764 222 2 23334443222 28999999999999999
Q ss_pred HHHHHHHH
Q 008219 172 FYYAQKAV 179 (573)
Q Consensus 172 ~~~i~~~~ 179 (573)
|+.+.+.+
T Consensus 246 f~~l~~~l 253 (255)
T 3c5h_A 246 FSTLVQLI 253 (255)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
No 161
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.85 E-value=5.9e-21 Score=172.97 Aligned_cols=140 Identities=17% Similarity=0.259 Sum_probs=116.6
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.+||+++|.+|||||||+++|+++.+...+.++.+..+. ..+..++....+.+|||+|++.+..+ +..+++.+|+++
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~i 79 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAM--RDLYMKNGQGFA 79 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTH--HHHHHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHH--HHHHhccCCEEE
Confidence 589999999999999999999998887777777665544 45667766778999999999888877 778889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHc-CCccC
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFL-VMVLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~-~~~~~ 572 (573)
+|||++++.+|+.+..|+..+....... ++|+++|+||+|+...+ +..++++++++.+ ++++|
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTE--DVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFL 144 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcC--CCcEEEEEECccccccccCCHHHHHHHHHHccCCcEE
Confidence 9999999999999999998877653222 89999999999997655 4577888899887 66664
No 162
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.85 E-value=1e-20 Score=173.40 Aligned_cols=145 Identities=14% Similarity=0.217 Sum_probs=116.9
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|++|||||||+++|+++.+...+.++.+..+....+..++....+.+|||+|++.+..+ +..+++.+|+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~ 82 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSL--RTPFYRGSDC 82 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHH--HGGGGTTCSE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhh--HHHHHhcCCE
Confidence 45689999999999999999999998887777778777777777777766678999999999998888 7889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCC-CCCCCcEEEEEeCCCCcccccchhhHHHHHH-HcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGED-TGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT-FLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~ 572 (573)
+++|||++++.+|+.+..|+..+...... ...++|+++|+||+|+....+..++++++++ ..++++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 151 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYF 151 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEE
Confidence 99999999999999999999887664321 0017899999999999854566778888888 4456554
No 163
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.85 E-value=1.2e-20 Score=177.03 Aligned_cols=140 Identities=17% Similarity=0.216 Sum_probs=119.4
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCe-----------------------------
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGT----------------------------- 476 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 476 (573)
+..+||+|+|.+|||||||+++|++..+...+.++.+..+....+..++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 456899999999999999999999998887777888777777777776544
Q ss_pred --------EEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCC
Q 008219 477 --------KKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKD 548 (573)
Q Consensus 477 --------~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 548 (573)
..+.+|||+|++.+..+ ...+++.+|++++|||++++.++..+..|+..+.... +.|+++|+||+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-----~~piilv~NK~ 157 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASI--VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-----NYIIILVANKI 157 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTT--HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-----CCEEEEEEECT
T ss_pred cccCccceeEEEEEECCCcHHHHHH--HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-----CCcEEEEEECC
Confidence 78899999999888877 7788999999999999999999999999999888765 69999999999
Q ss_pred CCcccccchhhHHHHHHHcCCccC
Q 008219 549 DLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 549 Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
|+....+..++++++++++++++|
T Consensus 158 D~~~~~~~~~~~~~~~~~~~~~~~ 181 (208)
T 3clv_A 158 DKNKFQVDILEVQKYAQDNNLLFI 181 (208)
T ss_dssp TCC-CCSCHHHHHHHHHHTTCEEE
T ss_pred CcccccCCHHHHHHHHHHcCCcEE
Confidence 944334567889999999988775
No 164
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=3e-21 Score=180.85 Aligned_cols=143 Identities=15% Similarity=0.212 Sum_probs=110.9
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
.+..+||+|+|++|||||||+++|+++.+...+.++.+..+....+..++....+.+|||+|.+.+..+ +..+++.+|
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d 102 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSI--AKSYFRKAD 102 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHH--HHHHHHHCS
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhh--HHHHHhhCC
Confidence 455699999999999999999999999887777777777777777777766778999999999988887 778899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc-------cccchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-------FAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|+.+..|+..+...... ++|++||+||+|+.. ..+..++++++++.++++++
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 174 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHE---TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFC 174 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEE
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEE
Confidence 999999999999999999999888765432 799999999999963 12446788889999888765
No 165
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.85 E-value=5.2e-21 Score=181.75 Aligned_cols=144 Identities=10% Similarity=0.140 Sum_probs=119.4
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCC----------eEEEEEEecCChhHHHhhh
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGG----------TKKTVVLREIPEEAVAKLL 494 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~dt~G~~~~~~~~ 494 (573)
.+..+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+.+. ...+.+|||+|++.+..+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~- 100 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL- 100 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH-
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH-
Confidence 356799999999999999999999998887666666666666566666544 578999999999999888
Q ss_pred ccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 495 SNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 495 ~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+..+++.+|++++|||++++.+|+.+..|+..+....... ++|++||+||+|+...+ +..++++++++.+++++|
T Consensus 101 -~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 176 (217)
T 2f7s_A 101 -TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE--NPDIVLIGNKADLPDQREVNERQARELADKYGIPYF 176 (217)
T ss_dssp -HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTT--CCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred -HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcC--CCCEEEEEECCccccccccCHHHHHHHHHHCCCcEE
Confidence 8889999999999999999999999999988876554322 89999999999997654 457788999999998775
No 166
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.85 E-value=4.9e-21 Score=172.52 Aligned_cols=149 Identities=22% Similarity=0.209 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeecccccCCceeEEEEeCCCCccc-------hhhhHhhhccC
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFP--ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED-------RGKLGEELRRA 87 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~a 87 (573)
.||+++|++|||||||+++|.+..+. ...+++.... ....+...+..+.+|||||+..+ ......+++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL-KEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CC-EEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-eEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 58999999999999999999988743 2233321111 22233345568999999998762 33455778999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCC
Q 008219 88 DAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (573)
Q Consensus 88 d~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (573)
|++++|+|++++.+... ..+...++.. ++|+++|+||+|+.... +....+. .++ ..++++|||++|.|
T Consensus 81 ~~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~p~ilv~nK~Dl~~~~------~~~~~~~-~~~-~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQAD--YEVAEYLRRK--GKPVILVATKVDDPKHE------LYLGPLY-GLG-FGDPIPTSSEHARG 148 (161)
T ss_dssp SEEEEEEESSSCCCHHH--HHHHHHHHHH--TCCEEEEEECCCSGGGG------GGCGGGG-GGS-SCSCEECBTTTTBS
T ss_pred CEEEEEEECCCcccHhH--HHHHHHHHhc--CCCEEEEEECcccccch------HhHHHHH-hCC-CCCeEEEecccCCC
Confidence 99999999998755443 2245555553 79999999999997641 1111222 333 22789999999999
Q ss_pred chhHHHHHHHH
Q 008219 168 VPEVFYYAQKA 178 (573)
Q Consensus 168 i~~l~~~i~~~ 178 (573)
++++++++.+.
T Consensus 149 v~~l~~~l~~~ 159 (161)
T 2dyk_A 149 LEELLEAIWER 159 (161)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 99999999875
No 167
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.85 E-value=1.3e-20 Score=174.56 Aligned_cols=141 Identities=18% Similarity=0.270 Sum_probs=116.5
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+|+|++|||||||+++|+++.+...+.++.+... ...+..++....+.+|||+|++.+..+ +..+++.+|++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~ 79 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGF 79 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEETTEEEEEEEEECCCC---CTT--HHHHHHHCSEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEECCcEEEEEEEECCCcHHHHHH--HHHHHhcCCEE
Confidence 468999999999999999999999888777766665433 345566656667889999999998888 78889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.+|..+..|+..+....... ++|+++|+||+|+....+..++++++++.++++++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 143 (189)
T 4dsu_A 80 LCVFAINNTKSFEDIHHYREQIKRVKDSE--DVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFI 143 (189)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCS--CCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECccCcccccCHHHHHHHHHHcCCeEE
Confidence 99999999999999999998887754433 89999999999998766678889999999998775
No 168
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.85 E-value=8.6e-21 Score=171.90 Aligned_cols=141 Identities=19% Similarity=0.310 Sum_probs=115.1
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
+.+||+++|.+|||||||+++|+++.+...+.++.+.... ..+...+....+.+|||+|.+.+..+ +..+++.+|++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~ 79 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGEGF 79 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHH--HHHHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHH--HHHHhhcCCEE
Confidence 4589999999999999999999998887777666665443 34556655668999999999888887 77889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.+|..+..|+..+....... ++|+++|+||+|+...+ +..++++++++.++++++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T 1u8z_A 80 LCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYV 144 (168)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCT--TSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEECccccccCccCHHHHHHHHHHcCCeEE
Confidence 99999999999999999998887765433 79999999999997654 557788899998888765
No 169
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.84 E-value=1.2e-20 Score=177.59 Aligned_cols=140 Identities=17% Similarity=0.222 Sum_probs=116.8
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|++|||||||+++|+++.+...+.++.+..+. ..+..++....+.+|||+|++.+..+ ...+++++|+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~ 102 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNV--RPLSYPDSDA 102 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTT--GGGGCTTCSE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHH--HHhhccCCCE
Confidence 45689999999999999999999999888777777665553 45666766788999999999998888 7888999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcC-Cc
Q 008219 506 AVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLV-MV 570 (573)
Q Consensus 506 vilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~-~~ 570 (573)
+++|||++++.+|..+ ..|+..+....+ ++|+++|+||+|+... .+..+++++++++++ ++
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 178 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 178 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC----CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence 9999999999999999 688888877643 7999999999999742 245677889999887 56
Q ss_pred cC
Q 008219 571 LY 572 (573)
Q Consensus 571 ~~ 572 (573)
||
T Consensus 179 ~~ 180 (205)
T 1gwn_A 179 YI 180 (205)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 170
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.84 E-value=7.2e-21 Score=185.31 Aligned_cols=155 Identities=19% Similarity=0.167 Sum_probs=116.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhh------hHhhh--
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGK------LGEEL-- 84 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~-- 84 (573)
++.++|+++|++|||||||+|+|++..+ +.++|++. .......+...+..+.||||||+..+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~t-v~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVT-VEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSC-CEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCce-EEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 4679999999999999999999998764 34455532 22234445556789999999999876542 24444
Q ss_pred ccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCC
Q 008219 85 RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (573)
Q Consensus 85 ~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (573)
..+|++++|+|+++.++.. +|...+... ++|+++|+||+|+... +.+.. ....+...++. +++++||++
T Consensus 82 ~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~-~~i~~--~~~~l~~~lg~--~vi~~SA~~ 150 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKK-TGMKI--DRYELQKHLGI--PVVFTSSVT 150 (258)
T ss_dssp SCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHH-TTCCB--CHHHHHHHHCS--CEEECCTTT
T ss_pred cCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCc-cchHH--HHHHHHHHcCC--CEEEEEeeC
Confidence 5899999999999865432 266666554 8999999999998654 22222 24556677763 899999999
Q ss_pred CCCchhHHHHHHHHHh
Q 008219 165 QIQVPEVFYYAQKAVL 180 (573)
Q Consensus 165 ~~gi~~l~~~i~~~~~ 180 (573)
|.|++++++.+.+.+.
T Consensus 151 g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 151 GEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhh
Confidence 9999999999998765
No 171
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.84 E-value=3.3e-20 Score=184.55 Aligned_cols=157 Identities=24% Similarity=0.245 Sum_probs=113.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeecccccCCceeEEEEeCCCCccc--------hhhhHhh
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPAN--VPPVLPPTRLPEDFYPDRVPITIIDTPSSVED--------RGKLGEE 83 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~ 83 (573)
.+..+|+|+|+||||||||+|+|++..+... .+++... .....+..++.++.||||||+... ......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~-~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRK-RLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS-CEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeE-EEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 4556899999999999999999999886532 3332211 122234456789999999998763 3445578
Q ss_pred hccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 84 ~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
++.+|++++|+|++++.+... ..+.+.++...+++|+++|+||+|+.... . + .......+....+++++||+
T Consensus 84 l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~-~----~-~~~~~~~~~~~~~~~~iSA~ 155 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYP-E----E-AMKAYHELLPEAEPRMLSAL 155 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSH-H----H-HHHHHHHTSTTSEEEECCTT
T ss_pred HhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCch-H----H-HHHHHHHhcCcCcEEEEeCC
Confidence 999999999999998755443 32456776655579999999999997651 1 0 12222333223479999999
Q ss_pred CCCCchhHHHHHHHHH
Q 008219 164 KQIQVPEVFYYAQKAV 179 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~~ 179 (573)
+|.|++++++.+.+.+
T Consensus 156 ~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 156 DERQVAELKADLLALM 171 (301)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998754
No 172
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.84 E-value=6.8e-21 Score=179.40 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=91.3
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCC--CCCCCCCCCCcccEEEEEEEcCCC--eEEEEEEecCChhHHHhhhccccccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGR--PFSDNYTPTTDERYAVNVVDQPGG--TKKTVVLREIPEEAVAKLLSNKDSLA 501 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~dt~G~~~~~~~~~~~~~~~ 501 (573)
...+||+|+|.+|||||||+++|++. .+...+.++.+.++....+.+++. ...+.+|||+|.+.+..+ +..+++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~ 95 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQ--ISQYWN 95 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHH--HSTTCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHH--HHHHHh
Confidence 35689999999999999999999998 666666666665666677788755 778999999999999988 888999
Q ss_pred cccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc-cc-cchhhHHHHHHHcCCccC
Q 008219 502 ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-FA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 502 ~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~ 572 (573)
.+|++++|||++++.+|+.+..|+..+.........++|+++|+||+|+.. .+ +..+++++++++++++++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 168 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFF 168 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEE
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999998876541001799999999999976 44 557889999999988765
No 173
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.84 E-value=7.5e-21 Score=174.72 Aligned_cols=143 Identities=18% Similarity=0.318 Sum_probs=117.9
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
....+||+|+|.+|||||||+++|+++.+...+.++.+..+. ..+..++....+.+|||+|++.+..+ ...+++.+|
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d 82 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAM--REQYMRAGH 82 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCC--HHHHHHHCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHH--HHHHHhhCC
Confidence 345689999999999999999999999887777666665554 55666655678899999999888777 777889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|..+..|+..+....... ++|+++|+||+|+...+ +..+++.++++.+++++|
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 149 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRD--DFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYF 149 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999998875543222 79999999999997654 557788889998888765
No 174
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.84 E-value=1.5e-20 Score=173.74 Aligned_cols=138 Identities=20% Similarity=0.297 Sum_probs=113.0
Q ss_pred cCCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccc
Q 008219 424 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 503 (573)
Q Consensus 424 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~ 503 (573)
.....+||+|+|++|||||||+++|+++.+...+.++.+ .+ ...+.+++....+.+|||+|++.+. +++.+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~ 86 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-------FAAWV 86 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-------HHHHC
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-------eecCC
Confidence 345679999999999999999999999998877766633 33 3667777666788999999998776 45789
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc--c-ccchhhHHHHHHHcC-CccC
Q 008219 504 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS--F-AMAIQDSTRVFTFLV-MVLY 572 (573)
Q Consensus 504 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~--~-~~~~~~~~~~~~~~~-~~~~ 572 (573)
|++++|||++++.||+.+..|+..+....... ++|++||+||+|+.. . .+..+++++++++++ ++||
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~ 157 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNAS--EVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYY 157 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGG--GSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEE
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEE
Confidence 99999999999999999999999988764322 799999999999952 2 255788999999987 7665
No 175
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.84 E-value=6.3e-22 Score=185.52 Aligned_cols=144 Identities=19% Similarity=0.319 Sum_probs=118.6
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
....+||+|+|.+|||||||+++|+++.+...+.++.+.+.....+..++....+.+|||+|++.+..+ +..+++.+|
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 107 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--TSSYYRGAH 107 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC--SCC--CCCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH--HHHHhhcCC
Confidence 356799999999999999999999999888777777787888888888866678999999999988887 888999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccCC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLYK 573 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~k 573 (573)
++++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +..++++++++.+++++|.
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 174 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLE 174 (199)
T ss_dssp EEEECC-CCCSHHHHHHHHHHHHHHSCC-C---CSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccC---CCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEE
Confidence 999999999999999999999998776543 79999999999997655 4457788899999988863
No 176
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=6.2e-21 Score=176.78 Aligned_cols=159 Identities=16% Similarity=0.161 Sum_probs=114.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeecccccCCceeEEEEeCCCCccch------hhhHhhhc
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDR------GKLGEELR 85 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~ 85 (573)
.++.+||+++|++|||||||+++|++..+. ...+++. .......+...+..+.+|||||++.+. .....++.
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVT-VEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSC-CEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCee-ccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 356799999999999999999999986542 2244321 122333444557899999999998764 23445554
Q ss_pred --cCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 86 --RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 86 --~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
.+|++++|+|.++ ++... .|+..+... +.|+++|+||+|+... +.+. .....+...++. ++++|||+
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~-~~~~~~~~~--~~piilv~nK~Dl~~~-~~~~--~~~~~~~~~~~~--~~~~~Sa~ 151 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNL-YLTLQLMEM--GANLLLALNKMDLAKS-LGIE--IDVDKLEKILGV--KVVPLSAA 151 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHH-HHHHHHHTT--TCCEEEEEECHHHHHH-TTCC--CCHHHHHHHHTS--CEEECBGG
T ss_pred ccCCCEEEEEecchh---HHHHH-HHHHHHHhc--CCCEEEEEEhhhcccc-ccch--HHHHHHHHHhCC--CeEEEEec
Confidence 5999999999765 44444 377777664 7999999999998653 2222 233455666653 89999999
Q ss_pred CCCCchhHHHHHHHHHhCCC
Q 008219 164 KQIQVPEVFYYAQKAVLHPT 183 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~~~~~~ 183 (573)
+|.|++++++.+.+.+....
T Consensus 152 ~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 152 KKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GTBSHHHHHHHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHhcc
Confidence 99999999999998765443
No 177
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=176.49 Aligned_cols=143 Identities=19% Similarity=0.300 Sum_probs=120.1
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
....+||+|+|.+|||||||+++|+++.+...+.++.+..+. ..+..++....+.+|||+|.+.+..+ +..+++.+|
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~~ 87 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGE 87 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHH--HHHHHhhCC
Confidence 456789999999999999999999998887777666665443 44566655668999999999888887 778899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|..+..|+..+....... ++|+++|+||+|+...+ +..+++.++++.+++++|
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYV 154 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEeccCccccccccHHHHHHHHHHhCCeEE
Confidence 9999999999999999999999888765433 79999999999997654 557788899999888765
No 178
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.84 E-value=3.8e-21 Score=176.38 Aligned_cols=145 Identities=15% Similarity=0.171 Sum_probs=118.1
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCC-CeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPG-GTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
.+.+||+|+|++|||||||+++|+++.+...+.++.+.++....+..++ ....+.+|||+|++.+..+ +..+++++|
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~d 81 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM--LDKYIYGAQ 81 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT--HHHHHTTCS
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch--hhHHHhhCC
Confidence 4568999999999999999999999887766667777777777777774 2568999999999988877 778899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|+.+..|+..+...........|+++|+||+|+...+ +..++++++++.++++++
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 2hxs_A 82 GVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSH 150 (178)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEE
Confidence 99999999999999999999888776421000034489999999997654 556788899999988765
No 179
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.84 E-value=1.7e-20 Score=176.63 Aligned_cols=145 Identities=16% Similarity=0.236 Sum_probs=120.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
+..+||+|+|.+|||||||+++|++..+...+.++.+.+.....+..++....+.+|||+|++.+..+ +..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 83 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL--GVAFYRGADC 83 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS--CCGGGTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh--HHHHHhCCcE
Confidence 45689999999999999999999999988888888887777777888866778999999999988887 8889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCC-CCCCCcEEEEEeCCCCcccccchhhHHHHHH-HcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGED-TGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT-FLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~ 572 (573)
+++|||++++.+|..+..|+..+...... ...++|+++|+||+|+....+..+++.++++ ..++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYF 152 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEE
Confidence 99999999999999999999887664321 0017899999999999854556777888887 5556654
No 180
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.84 E-value=5.1e-20 Score=172.45 Aligned_cols=161 Identities=23% Similarity=0.321 Sum_probs=124.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
..+||+|+|++|||||||+++|++..+...+.++.+... ..+.+.+..+.+.+|||+|++.+......+++.+|++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 468999999999999999999999887766554443322 334445556788999999998888888888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
|+|+++..++..+.. |+..+.... .+.|+++|+||+|+... +.+...+. ..++...+ + .++++||+++.|++++
T Consensus 84 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~i~~v~nK~Dl~~~-~~~~~~~a-~~l~~~~~-~-~~~d~Sal~~~~i~~l 158 (199)
T 2f9l_A 84 VYDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHL-RAVPTDEA-RAFAEKNN-L-SFIETSALDSTNVEEA 158 (199)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG-CCSCHHHH-HHHHHHTT-C-EEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECcccccc-cCcCHHHH-HHHHHHcC-C-eEEEEeCCCCCCHHHH
Confidence 999999999988774 887776543 47899999999999764 33444333 44555544 2 7899999999999999
Q ss_pred HHHHHHHHh
Q 008219 172 FYYAQKAVL 180 (573)
Q Consensus 172 ~~~i~~~~~ 180 (573)
++.+.+.+.
T Consensus 159 ~~~l~~~~~ 167 (199)
T 2f9l_A 159 FKNILTEIY 167 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988654
No 181
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=2.3e-20 Score=173.95 Aligned_cols=140 Identities=21% Similarity=0.348 Sum_probs=117.7
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|++|||||||+++|+++.+...+.++.+..+. ..+..++....+.+|||+|++.+..+ +..+++++|+
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~d~ 92 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGGKQYLLGLYDTAGQEDYDRL--RPLSYPMTDV 92 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE-EEEESSSCEEEEEEECCCCSSSSTTT--GGGGCTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE-EEEEECCEEEEEEEEECCCCcchhHH--HHHhcCCCCE
Confidence 35689999999999999999999999887777777665553 45667766678999999999988888 8889999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-c
Q 008219 506 AVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-V 570 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~ 570 (573)
+++|||++++.+|..+. .|+..+....+ ++|+++|+||+|+... .+..+++.++++.+++ +
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 168 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYAP----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC 168 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcE
Confidence 99999999999999997 78888877644 7999999999999753 2456788899999887 5
Q ss_pred cC
Q 008219 571 LY 572 (573)
Q Consensus 571 ~~ 572 (573)
||
T Consensus 169 ~~ 170 (194)
T 2atx_A 169 YV 170 (194)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 182
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.84 E-value=1.2e-20 Score=184.78 Aligned_cols=152 Identities=20% Similarity=0.167 Sum_probs=113.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeecccccCCceeEEEEeCCCCccch------hhhHhhhc--c
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADT-FPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDR------GKLGEELR--R 86 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~--~ 86 (573)
.+||+++|+||||||||+|+|++.. ++.++|++.-.. ....+.. +..+.+|||||+..+. .....++. .
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~-~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER-KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC-EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE-EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 5899999999999999999999876 566677633221 2333444 7789999999998765 33455554 6
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCC
Q 008219 87 ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (573)
Q Consensus 87 ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (573)
+|++++|+|+++.++. . +|...+... ++|+++|+||+|+... +.+. .....+...++. ++++|||++|.
T Consensus 81 ~d~vi~V~D~t~~e~~---~-~~~~~l~~~--~~p~ilv~NK~Dl~~~-~~~~--~~~~~l~~~lg~--~vi~~SA~~g~ 149 (272)
T 3b1v_A 81 ADSILNVVDATNLERN---L-YLTTQLIET--GIPVTIALNMIDVLDG-QGKK--INVDKLSYHLGV--PVVATSALKQT 149 (272)
T ss_dssp CSEEEEEEEGGGHHHH---H-HHHHHHHHT--CSCEEEEEECHHHHHH-TTCC--CCHHHHHHHHTS--CEEECBTTTTB
T ss_pred CCEEEEEecCCchHhH---H-HHHHHHHhc--CCCEEEEEEChhhCCc-CCcH--HHHHHHHHHcCC--CEEEEEccCCC
Confidence 9999999998875433 2 366666654 8999999999998643 2222 223456666663 89999999999
Q ss_pred CchhHHHHHHHHHh
Q 008219 167 QVPEVFYYAQKAVL 180 (573)
Q Consensus 167 gi~~l~~~i~~~~~ 180 (573)
|++++|+.+.+.+.
T Consensus 150 gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 150 GVDQVVKKAAHTTT 163 (272)
T ss_dssp SHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988653
No 183
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.84 E-value=2.8e-20 Score=171.08 Aligned_cols=145 Identities=17% Similarity=0.261 Sum_probs=106.8
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcC-CCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
+..+||+|+|.+|||||||+++|+++.+...+.++.+.++....+..+ +....+.+|||+|++.+..+ +..+++.+|
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 83 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL--GVAFYRGAD 83 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------CCSTTCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhh--hHHHhhcCC
Confidence 456899999999999999999999998887777888777777777776 34568899999999999888 888999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCC-CCCCCcEEEEEeCCCCcccc--cchhhHHHHHH-HcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGED-TGFEVPCLIVAAKDDLDSFA--MAIQDSTRVFT-FLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~-~~~~~~~ 572 (573)
++++|||++++.+|+.+..|+..+...... ...++|+++|+||+|+.... +..++++++++ ..++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~ 155 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLF 155 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEE
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEE
Confidence 999999999999999999999887664320 00189999999999995432 45677888887 3455554
No 184
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.84 E-value=7.8e-21 Score=176.26 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCC-----------CccchhhhHhhhc
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPS-----------SVEDRGKLGEELR 85 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G-----------~~~~~~~~~~~~~ 85 (573)
+||+|+|++|||||||+++|++..+...+.+..........+ . .+.+||||| ++.+......+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 689999999999999999999988655432211111111122 1 689999999 3445555566677
Q ss_pred c-CCEEEEEEeCCCcccHHHHHHHHHHH---------HHh-cCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc
Q 008219 86 R-ADAVVLTYACDRPETLDELSTFWLPE---------LRR-LEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI 154 (573)
Q Consensus 86 ~-ad~il~v~D~~~~~s~~~~~~~~~~~---------l~~-~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 154 (573)
. ++++++|+++.+..++..+...|... ++. ...++|+++|+||+|+... + .+....+...++..
T Consensus 78 ~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~----~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN-V----QEVINFLAEKFEVP 152 (190)
T ss_dssp HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC-H----HHHHHHHHHHHTCC
T ss_pred hhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc-H----HHHHHHHHHHhhhh
Confidence 6 77777777777777887774456542 111 1247999999999999876 1 33445666666531
Q ss_pred -----CeEEEecCCCCCCchhHHHHHHHHHhC
Q 008219 155 -----ETCIECSALKQIQVPEVFYYAQKAVLH 181 (573)
Q Consensus 155 -----~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 181 (573)
.++++|||++|.|++++|+++.+.+..
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 147999999999999999999987643
No 185
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.83 E-value=4.5e-20 Score=171.33 Aligned_cols=142 Identities=18% Similarity=0.256 Sum_probs=108.3
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+++|.+|||||||+++|+++.+...+.++.+.... ..+...+....+.+|||+|.+.+..+ ...+++.+|+
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 95 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEG 95 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC-------------CTTCSE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE-EEEEECCEEEEEEEEECCChHHHHHH--HHHhhCcCCE
Confidence 35689999999999999999999998877666665554333 45566655678899999999988888 7889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|..+..|+..+....... ++|+++|+||+|+....+..+++++++++++++++
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSD--DVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFI 160 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCS--CCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEE
Confidence 999999999999999999998877654322 79999999999998755667888999999998765
No 186
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.83 E-value=2e-20 Score=172.89 Aligned_cols=142 Identities=19% Similarity=0.302 Sum_probs=118.0
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|.+|||||||+++|++..+...+.++.+..+. ..+...+....+.+|||+|.+.+..+ +..+++.+|+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 92 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI--RDNYFRSGEG 92 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHH--HHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHH--HHHHhccCCE
Confidence 45689999999999999999999998887777666665443 44556655668899999999888887 7788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|..+..|+..+....... ++|+++|+||+|+...+ +..++++++++++++++|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 158 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDE--NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYV 158 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCT--TCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEECccccccCccCHHHHHHHHHHcCCeEE
Confidence 999999999999999999998887765433 79999999999997654 556788899999988765
No 187
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.5e-20 Score=175.67 Aligned_cols=141 Identities=21% Similarity=0.290 Sum_probs=116.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|.+|||||||+++|+++.+...+.++.+..+. ..+..++....+.+|||+|.+. ..+ +..+++.+|+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~-~~~--~~~~~~~~d~ 101 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQED-TIQ--REGHMRWGEG 101 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCC-CHH--HHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE-EEEEECCEEEEEEEEECCCCCc-ccc--hhhhhccCCE
Confidence 45689999999999999999999999888777777776553 4455665667899999999876 444 6678899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|+.+..|+..+....... ++|+++|+||+|+...+ +..+++.++++++++++|
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 167 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPK--NVTLILVGNKADLDHSRQVSTEEGEKLATELACAFY 167 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCC--CCcEEEEEECcccccccccCHHHHHHHHHHhCCeEE
Confidence 999999999999999999998887653322 89999999999997754 557888899999988775
No 188
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.83 E-value=8e-20 Score=170.00 Aligned_cols=161 Identities=22% Similarity=0.314 Sum_probs=125.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il 91 (573)
...++|+|+|++|||||||+++|++..+...+.++.+... ..+.+.+..+.+.+|||+|++.+......+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 4569999999999999999999999887766555444322 33344455667888999999988888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 92 LTYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
+|+|+++..+++++.. |+..++.. ..+.|+++|+||+|+... +.....+ ...++...+ + .++++||+++.|+++
T Consensus 107 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~i~~v~nK~Dl~~~-~~~~~~~-a~~l~~~~~-~-~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 107 LVYDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHL-RAVPTDE-ARAFAEKNG-L-SFIETSALDSTNVEA 181 (191)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG-CCSCHHH-HHHHHHHTT-C-EEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECcccccc-cccCHHH-HHHHHHHcC-C-EEEEEeCCCCCCHHH
Confidence 9999999998888774 88777653 347899999999998754 3333333 344555544 2 789999999999999
Q ss_pred HHHHHHHHH
Q 008219 171 VFYYAQKAV 179 (573)
Q Consensus 171 l~~~i~~~~ 179 (573)
+++.+.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988754
No 189
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=176.56 Aligned_cols=140 Identities=19% Similarity=0.282 Sum_probs=96.9
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|.+|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|++.+..+ +..+++++|+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~l~Dt~G~~~~~~~--~~~~~~~~d~ 108 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM-VNLQVKGKPVHLHIWDTAGQDDYDRL--RPLFYPDASV 108 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEE-EEEEETTEEEEEEEEEC-----------------CEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCchhhhHH--HHHHhccCCE
Confidence 45689999999999999999999999887777676655443 44566656668999999999999888 8889999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-------------cchhhHHHHHHHcCC-c
Q 008219 506 AVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-------------MAIQDSTRVFTFLVM-V 570 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~-~ 570 (573)
+++|||++++.+|+.+. .|+..+..... ++|+++|+||+|+...+ +..+++.++++.+++ +
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 184 (214)
T 2j1l_A 109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCK----KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVA 184 (214)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS----SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCE
Confidence 99999999999999997 68888876653 79999999999997642 345677889998887 5
Q ss_pred cC
Q 008219 571 LY 572 (573)
Q Consensus 571 ~~ 572 (573)
+|
T Consensus 185 ~~ 186 (214)
T 2j1l_A 185 YL 186 (214)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 190
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.83 E-value=1.4e-20 Score=197.35 Aligned_cols=198 Identities=18% Similarity=0.226 Sum_probs=133.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhH--------
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLG-------- 81 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------- 81 (573)
+..+||+|+|++|||||||+|+|++..+ +...++ +|+ ....+..++..+.+|||||+.++....+
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~g---tT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~ 298 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPG---TTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSR 298 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTT---CCHHHHHHEEEETTEEEEECC--------------------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC---eeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHh
Confidence 4578999999999999999999998653 444554 333 2333445678999999999876544332
Q ss_pred hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEec
Q 008219 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (573)
Q Consensus 82 ~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (573)
.+++.+|++++|+|++++.+.... .|++.+. ++|+++|+||+|+... .... . ...+....++++||
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~--~i~~~l~----~~piivV~NK~Dl~~~-~~~~--~-----~~~~~~~~~~i~iS 364 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQ--EIYEQVK----HRPLILVMNKIDLVEK-QLIT--S-----LEYPENITQIVHTA 364 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHH--HHHHHHT----TSCEEEEEECTTSSCG-GGST--T-----CCCCTTCCCEEEEB
T ss_pred hhhhcCCEEEEEeccCCCCCHHHH--HHHHhcc----CCcEEEEEECCCCCcc-hhhH--H-----HHHhccCCcEEEEE
Confidence 468899999999999998776653 3666653 3799999999999875 2111 0 01111223799999
Q ss_pred CCCCCCchhHHHHHHHHHhCCC-----CCCcchhh-hhchhhHHHHHHHHHHhccCCCCCccCchhhhHHhhh
Q 008219 162 ALKQIQVPEVFYYAQKAVLHPT-----GPLFDQES-QALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVK 228 (573)
Q Consensus 162 a~~~~gi~~l~~~i~~~~~~~~-----~~~~~~~~-~~~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~ 228 (573)
|++|.|++++++.+.+.+.... .+.....+ .....++...+++.....+...+..+.+++++.....
T Consensus 365 Aktg~Gi~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~L~~a~~~L~~~~~~l~~~~~~dl~a~~Lr~a~~~ 437 (462)
T 3geh_A 365 AAQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQVQATITQQLPLDFWTIDLRGAIQA 437 (462)
T ss_dssp TTTTBSHHHHHHHHHHHHTTSSSSSCCSSCCCCHHHHHHHHHHHHHHHHHHHHTTTTCCGGGTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhccCCCCcccceechHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999875443 12222222 2355677888888777776666778888888877665
No 191
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.83 E-value=3.8e-20 Score=169.86 Aligned_cols=138 Identities=19% Similarity=0.237 Sum_probs=106.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+++|++|||||||+++|+++.+.. +.++.+..+ ...+..++....+.+|||+|++.+ .+++++|+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~d~ 75 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-------KFSGWADA 75 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCCH-------HHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCchh-------HHHHhCCE
Confidence 356899999999999999999999998876 556666444 466667756678899999998753 34688999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCc--cc-ccchhhHHHHHHHc-CCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD--SF-AMAIQDSTRVFTFL-VMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~--~~-~~~~~~~~~~~~~~-~~~~~ 572 (573)
+++|||++++.||+.+..|+..+.........++|+++|+||+|+. .. .+..++++++++++ ++++|
T Consensus 76 ~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~ 146 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYY 146 (178)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEE
Confidence 9999999999999999997655544321111179999999999994 22 25577888898876 56654
No 192
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=174.46 Aligned_cols=142 Identities=18% Similarity=0.282 Sum_probs=108.1
Q ss_pred cCCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccc
Q 008219 424 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 503 (573)
Q Consensus 424 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~ 503 (573)
.....+||+|+|.+|||||||+++|+++.+...+.++.+..+ ...+..++....+.+|||+|.+.+..+ +..+++++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~ 92 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKL--RPLCYTNT 92 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSS--GGGGGTTC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHH--hHhhcCCC
Confidence 345678999999999999999999999887766666665444 344556655568889999999988887 77889999
Q ss_pred cEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC
Q 008219 504 DIAVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM 569 (573)
Q Consensus 504 d~vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~ 569 (573)
|++++|||++++.+|..+. .|+..+....+ ++|+++|+||+|+... .+..+++..+++.+++
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP----KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA 168 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCS----SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC
Confidence 9999999999999999997 78888877654 7999999999999752 2456788889998886
Q ss_pred -ccC
Q 008219 570 -VLY 572 (573)
Q Consensus 570 -~~~ 572 (573)
+||
T Consensus 169 ~~~~ 172 (201)
T 2q3h_A 169 ASYI 172 (201)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 554
No 193
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.83 E-value=3.5e-20 Score=167.39 Aligned_cols=140 Identities=17% Similarity=0.251 Sum_probs=115.8
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
.+||+++|.+|||||||+++|+++.+...+.++.+... ...+...+....+.+|||+|.+.+..+ ...+++.+|+++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~~~~~~i 79 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM--RDQYMRTGEGFL 79 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHH--HHHHHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHH--HHHhhccCCEEE
Confidence 47999999999999999999999887766666655443 344556655667889999999887777 677889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
+|||++++.++..+..|+..+....... ++|+++|+||+|+....+..+++++++++++++++
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T 2ce2_X 80 CVFAINNTKSFEDIHQYREQIKRVKDSD--DVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYI 142 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCS--CCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999998887764333 79999999999998755667888999999998765
No 194
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.83 E-value=9.1e-21 Score=199.54 Aligned_cols=200 Identities=17% Similarity=0.228 Sum_probs=137.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeecccccCCceeEEEEeCCCCc-cchh--------hhHhh
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADT--FPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSV-EDRG--------KLGEE 83 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~--------~~~~~ 83 (573)
..++|+|+|.||||||||+|+|++.. ++.+++++.... ....+..++..+.||||||+. .+.. ....+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~-~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDV-ISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCS-CCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeee-EEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 45899999999999999999999875 455566533221 222334457889999999987 5542 23467
Q ss_pred hccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 84 ~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
++.+|++|+|+|++++.+++... +++.+ .++|+++|+||+|+... ...++. . ...+...++++|||+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~--il~~l----~~~piivV~NK~DL~~~---~~~~~~-~---~~~~~~~~~i~iSAk 387 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEK---INEEEI-K---NKLGTDRHMVKISAL 387 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCC---CCHHHH-H---HHHTCSTTEEEEEGG
T ss_pred hhcccEEEEEecCCCCCCHHHHH--HHHHh----cCCCEEEEEECcccccc---cCHHHH-H---HHhcCCCcEEEEECC
Confidence 89999999999999988876643 44444 37899999999999754 222221 1 112222379999999
Q ss_pred CCCCchhHHHHHHHHHhC----CCCCCcchhhh-hchhhHHHHHHHHHHhccCCCCCccCchhhhHHhhh
Q 008219 164 KQIQVPEVFYYAQKAVLH----PTGPLFDQESQ-ALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVK 228 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~~~~----~~~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~ 228 (573)
+|.|++++++.+.+.+.. ...+.....++ ....++...+++............+..++++.....
T Consensus 388 tg~Gi~eL~~~l~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~~l~a~~lr~a~~~ 457 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERALNL 457 (482)
T ss_dssp GTCCHHHHHHHHHHHTHHHHHHHTTCSCCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhhcCCCCcceEhhHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999999999886542 12222222222 245667777777666555555556667777666654
No 195
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.83 E-value=5.9e-20 Score=171.01 Aligned_cols=142 Identities=17% Similarity=0.270 Sum_probs=107.3
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCC--CCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhH-HHhhhcccccccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPF--SDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA-VAKLLSNKDSLAA 502 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~-~~~~~~~~~~~~~ 502 (573)
...+||+|+|++|||||||+++|++... ...+ ++.+.++....+.+++....+.+|||+|.+. +..+ ...+++.
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~--~~~~~~~ 80 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWL--HDHCMQV 80 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTT--GGGHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhH--HHhhccc
Confidence 3468999999999999999999996433 3222 3445555556677776666888999999876 4445 6677889
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 503 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 503 ~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+|++++|||++++.||+.+..|+..+....... ++|+++|+||+|+...+ +..++++.++..++++||
T Consensus 81 ~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~--~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 149 (192)
T 2cjw_A 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTE--DIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFI 149 (192)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC--CCeEEEEEechhhhccccccHHHHHHHHHHhCCceE
Confidence 999999999999999999999988776643222 79999999999997654 456677788888887765
No 196
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.83 E-value=2.7e-20 Score=176.13 Aligned_cols=140 Identities=18% Similarity=0.287 Sum_probs=116.2
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|++|||||||+++|+++.+...+.++.+..+. ..+..++....+.+|||+|++.+..+ +..+++++|+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 83 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQEDYSRL--RPLSYRGADI 83 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE-EEEECSSCEEEEEEECCCCCCCCCC----CGGGTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE-EEEEECCEEEEEEEEECCCcHHHHHH--HHhhccCCCE
Confidence 45689999999999999999999998887777777765553 45666766778999999999988887 7889999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc---------chhhHHHHHHHcCC-ccC
Q 008219 506 AVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM---------AIQDSTRVFTFLVM-VLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~-~~~ 572 (573)
+++|||++++.+|+.+. .|+..+....+ ++|++||+||+|+...+. ..++++++++++++ +||
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 157 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAP----NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYI 157 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEE
Confidence 99999999999999997 78888877653 799999999999976542 56788889999885 654
No 197
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.83 E-value=9.7e-21 Score=184.07 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeecccccCCceeEEEEeCCCCccchh----------hhHhhh-
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG----------KLGEEL- 84 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~- 84 (573)
.+|+++|++|||||||+|+|++... +.++|++.. ......+..++..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv-~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTV-EKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSS-EEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceE-EEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 3799999999999999999998763 334555321 223444555567999999999987653 334556
Q ss_pred -ccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCC
Q 008219 85 -RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (573)
Q Consensus 85 -~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (573)
+.+|++++|+|+++.++... +...+... ++|+++|+||+|+... +... .....+...++ .+++++||+
T Consensus 81 ~~~~d~vi~VvDas~~~~~~~----l~~~l~~~--~~pvilv~NK~Dl~~~-~~~~--~~~~~l~~~lg--~~vi~~SA~ 149 (256)
T 3iby_A 81 DLEYDCIINVIDACHLERHLY----LTSQLFEL--GKPVVVALNMMDIAEH-RGIS--IDTEKLESLLG--CSVIPIQAH 149 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHHH----HHHHHTTS--CSCEEEEEECHHHHHH-TTCE--ECHHHHHHHHC--SCEEECBGG
T ss_pred hCCCCEEEEEeeCCCchhHHH----HHHHHHHc--CCCEEEEEEChhcCCc-CCcH--HHHHHHHHHcC--CCEEEEECC
Confidence 89999999999888544332 44555554 8999999999998654 2121 12344666666 389999999
Q ss_pred CCCCchhHHHHHHHH
Q 008219 164 KQIQVPEVFYYAQKA 178 (573)
Q Consensus 164 ~~~gi~~l~~~i~~~ 178 (573)
+|.|++++++.+.+.
T Consensus 150 ~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 150 KNIGIPALQQSLLHC 164 (256)
T ss_dssp GTBSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999999886
No 198
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.82 E-value=2e-20 Score=184.80 Aligned_cols=157 Identities=13% Similarity=0.184 Sum_probs=107.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCCeeecccccCCceeEEEEeCCCCccchh---hhHhhhccCCEEE
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPAN---VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG---KLGEELRRADAVV 91 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~ad~il 91 (573)
||+++|+.|||||||++++.++.+... ..++.+..... + ...++++||||+|++++.. ....++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~I 77 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALV 77 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEE
Confidence 699999999999999999876543321 22222222221 2 3458899999999999864 4688999999999
Q ss_pred EEEeCCCcccHHHHHHHH---HHHHHhcCCCCcEEEEEeCCCCCCCc-ccccHHHHHHHHHHHhcc------cCeEEEec
Q 008219 92 LTYACDRPETLDELSTFW---LPELRRLEVKVPVIVVGCKLDLRDEN-QQVSLEQVMMPIMQQFRE------IETCIECS 161 (573)
Q Consensus 92 ~v~D~~~~~s~~~~~~~~---~~~l~~~~~~~piilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~S 161 (573)
+|||++++ .++... .| +..++...+++|+++||||+|+..+. +.....+......+.+.. -.+++++|
T Consensus 78 lV~Ditd~-~~~~~~-~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS 155 (331)
T 3r7w_B 78 YVIDSQDE-YINAIT-NLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS 155 (331)
T ss_dssp EECCCSSC-TTHHHH-HHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred EEEECCch-HHHHHH-HHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence 99999998 333332 24 44445556799999999999998752 111111222222233322 13899999
Q ss_pred CCCCCCchhHHHHHHHHHh
Q 008219 162 ALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 162 a~~~~gi~~l~~~i~~~~~ 180 (573)
|++ .||.+.|..+++.+.
T Consensus 156 Akd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 156 IFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp SSS-SHHHHHHHHHHTTSS
T ss_pred cCC-CcHHHHHHHHHHHHH
Confidence 997 589999999887654
No 199
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.82 E-value=7.1e-20 Score=171.76 Aligned_cols=141 Identities=18% Similarity=0.251 Sum_probs=116.4
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
....+||+|+|.+|||||||+++|.++.+...+.++.+..+.. .+..++....+.+|||+|++.+..+ +..+++.+|
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d 98 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRL--RPLSYPDTD 98 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTT--GGGGCTTCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHH--HHHhcCCCC
Confidence 3456899999999999999999999998887777777766553 3566655678999999999998888 788999999
Q ss_pred EEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-------------cchhhHHHHHHHcCC-
Q 008219 505 IAVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-------------MAIQDSTRVFTFLVM- 569 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~- 569 (573)
++++|||++++.+|..+ ..|+..+....+ ++|+++|+||+|+.... +..+++.++++.+++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 174 (201)
T 2gco_A 99 VILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAF 174 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCc
Confidence 99999999999999999 577777776543 79999999999997541 345678888888887
Q ss_pred ccC
Q 008219 570 VLY 572 (573)
Q Consensus 570 ~~~ 572 (573)
++|
T Consensus 175 ~~~ 177 (201)
T 2gco_A 175 GYL 177 (201)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 200
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=4.2e-20 Score=168.08 Aligned_cols=142 Identities=16% Similarity=0.265 Sum_probs=113.3
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+++|.+|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|.+.+..+ ...+++.+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~--~~~~~~~~~~~ 78 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAM--QRLSISKGHAF 78 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHH--HHHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHH--HHHhcccCCEE
Confidence 3589999999999999999999998887666666554333 34455545668899999999888877 77788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||++++.+++.+..|+..+....... .++|+++|+||+|+...+ +...+++.+++.+++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 144 (172)
T 2erx_A 79 ILVYSITSRQSLEELKPIYEQICEIKGDV-ESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFM 144 (172)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEE
Confidence 99999999999999999887776643211 179999999999997654 456778888988888765
No 201
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=3.9e-20 Score=194.28 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=116.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeecccccCCceeEEEEeCCCCc----------cchhhhH
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSV----------EDRGKLG 81 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 81 (573)
...+||+++|++|||||||+|+|++..+ +..++++.... ....+..++..+.||||||+. .+.....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~-~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA-VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeee-eEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 3568999999999999999999998875 34455532111 222344456789999999973 3333222
Q ss_pred -hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc--cCeEE
Q 008219 82 -EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETCI 158 (573)
Q Consensus 82 -~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 158 (573)
.+++.+|++++|+|++++.++++.. |+..+... ++|+++|+||+|+... +....++....+...+.. ..+++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~~~--~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAHEA--GKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHHT--TCEEEEEEECGGGSCC-CTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHHHc--CCcEEEEEECccCCCc-chHHHHHHHHHHHHhcccCCCCCEE
Confidence 5789999999999999998888764 88877764 7999999999999865 333334444445555432 23899
Q ss_pred EecCCCCCCchhHHHHHHHHHh
Q 008219 159 ECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 159 ~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
+|||++|.|++++++.+.+.+.
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 202
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.82 E-value=7.2e-20 Score=169.00 Aligned_cols=139 Identities=19% Similarity=0.273 Sum_probs=114.1
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+++|.+|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|++.+..+ +..+++.+|++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~ 80 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTDVS 80 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE-EEEEETTEEEEEEEECCCCSGGGTTT--GGGGCTTCSEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE-EEEEECCEEEEEEEEECCCCHhHHHH--HHHhccCCcEE
Confidence 4689999999999999999999998887776666655443 44556656678889999999998887 77889999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-cc
Q 008219 507 VFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-VL 571 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~~ 571 (573)
++|||++++.+|..+. .|+..+....+ ++|+++|+||+|+... .+..+++.++++.+++ ++
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 156 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhCC----CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 9999999999999997 68888877644 7999999999999653 2345678889988886 55
Q ss_pred C
Q 008219 572 Y 572 (573)
Q Consensus 572 ~ 572 (573)
+
T Consensus 157 ~ 157 (186)
T 1mh1_A 157 L 157 (186)
T ss_dssp E
T ss_pred E
Confidence 4
No 203
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.82 E-value=3.1e-20 Score=176.47 Aligned_cols=142 Identities=17% Similarity=0.182 Sum_probs=115.4
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCe-EEEEEEecCChhHHHhhhcccccccccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGT-KKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
...+||+|+|.+|||||||+|+|+++.+...+.++.+.......+...++. ..+.+|||+|.+.+..+ +..+++.+|
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 86 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL--KDVYYIGAS 86 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCC--CHHHHTTCS
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchH--HHHHhhcCC
Confidence 456899999999999999999999988876666676665555545444333 78999999999988877 788899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ +..+.+.++++.+++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGN---EAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYF 152 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCS---SSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEE
Confidence 999999999999999999999888776543 68999999999998753 556778888888887765
No 204
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.82 E-value=1.2e-20 Score=179.76 Aligned_cols=141 Identities=16% Similarity=0.228 Sum_probs=118.3
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
....+||+|+|.+|||||||+++|+.+.+...+.++.+.+.....+...++...+.+|||+|++.+..+ +..+++++|
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~ 89 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL--RDGYYIQAQ 89 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCC--CHHHHTTCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHH--HHHHHhcCC
Confidence 456689999999999999999998877766666677776666666777767778999999999988887 888899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
++++|||++++.+|..+..|+..+..... ++|+++|+||+|+....+. .+..++++.+++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~ 152 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCE----NIPIVLCGNKVDIKDRKVK-AKSIVFHRKKNLQYY 152 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHST----TCCEEEEEECTTSSSCSSC-GGGCCHHHHHTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCEEEEEECCcccccccc-HHHHHHHHHcCCEEE
Confidence 99999999999999999999999888754 7999999999999765443 356677888887765
No 205
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.82 E-value=2.8e-20 Score=182.98 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=111.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhh----------hHhh
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGK----------LGEE 83 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~~~ 83 (573)
+.++|+++|++|||||||+|+|++..+ +..++++. .......+...+..+.+|||||+..+... ...+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t-~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVT-VERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSS-SEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCee-EEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 579999999999999999999998774 23355532 12234445556678999999998876521 2222
Q ss_pred --hccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEec
Q 008219 84 --LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (573)
Q Consensus 84 --~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (573)
.+.+|++++|+|+++.++.. +|...+... ++|+++|+||+|+... +... .....+...++ .+++++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~----~~~~~l~~~--~~p~ivv~NK~Dl~~~-~~~~--~~~~~l~~~lg--~~~i~~S 149 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEK-QNIR--IEIDALSARLG--CPVIPLV 149 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHH----HHHHHHHHH--TCCEEEEEECHHHHHH-TTEE--ECHHHHHHHHT--SCEEECC
T ss_pred HhhcCCCEEEEEecCCChHHHH----HHHHHHHhc--CCCEEEEEECccchhh-hhHH--HHHHHHHHhcC--CCEEEEE
Confidence 37999999999988754332 355555555 7999999999998654 1111 12345566666 3899999
Q ss_pred CCCCCCchhHHHHHHHHHh
Q 008219 162 ALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 162 a~~~~gi~~l~~~i~~~~~ 180 (573)
|++|.|++++++.+.+.+.
T Consensus 150 A~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 150 STRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp CGGGHHHHHHHHHHHTCCC
T ss_pred cCCCCCHHHHHHHHHHHHh
Confidence 9999999999999987654
No 206
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.81 E-value=1.1e-19 Score=170.99 Aligned_cols=138 Identities=20% Similarity=0.235 Sum_probs=112.1
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+++|.+|||||||+++|+++.+...+.++.+.. ....+..++....+.+|||+|.+.+..+ +..+++++|+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~ 104 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRL--RPLSYPQTDV 104 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE-EEEEEECC-CEEEEEEEEECCSGGGTTT--GGGGCTTCSE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce-eEEEEEECCEEEEEEEEECCCchhhHHH--HHHHhccCCE
Confidence 456899999999999999999999988876666665433 3345667766778889999999999888 8889999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-------------cchhhHHHHHHHcCCc
Q 008219 506 AVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-------------MAIQDSTRVFTFLVMV 570 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~ 570 (573)
+++|||++++.+|+.+. .|+..+..... ++|+++|+||+|+...+ +..+++..+++.+++.
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 179 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 179 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS----SCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCc
Confidence 99999999999999997 78888777653 89999999999997543 3456788889888864
No 207
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=6.4e-20 Score=171.45 Aligned_cols=143 Identities=17% Similarity=0.270 Sum_probs=115.4
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|.+|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|.+.+..+ +..+++.+|+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 82 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAM--QRLSISKGHA 82 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHH--HHHHHHHCSE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHH--HHHhhccCCE
Confidence 34689999999999999999999998887766666654433 34455555668899999999888887 7788899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||++++.+|+.+..|+..+....... .++|+++|+||+|+....+..+++.++++.+++++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 148 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSV-EDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFM 148 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCG-GGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEE
Confidence 999999999999999988887666542110 178999999999998755667788889999888765
No 208
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.81 E-value=1.6e-20 Score=172.95 Aligned_cols=140 Identities=19% Similarity=0.320 Sum_probs=101.9
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|++|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|++.+..+ +..+++++|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 82 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRL--RPLSYRGADV 82 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTT--GGGGGTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhh--HHhhccCCCE
Confidence 34589999999999999999999998877666665554332 12333434556779999999998888 8889999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc-----------chhhHHHHHHHcCC-ccC
Q 008219 506 AVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM-----------AIQDSTRVFTFLVM-VLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~-~~~ 572 (573)
+++|||++++.+|+.+. .|+..+..... ++|+++|+||+|+...+. ..++++++++.+++ +|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 158 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAP----GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYI 158 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEE
Confidence 99999999999999997 68888877643 799999999999976442 46778899999886 654
No 209
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.4e-19 Score=170.69 Aligned_cols=140 Identities=21% Similarity=0.274 Sum_probs=109.2
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|.+|||||||+++|+++.+...+.++.+..+.. .+..++....+.+|||+|++.+..+ +..+++.+|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 99 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRL--RPLSYPDTDV 99 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTT--GGGGCTTCCE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHH--HHhhcCCCCE
Confidence 345899999999999999999999998887776776665543 3566655678899999999988887 7888999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-------------cchhhHHHHHHHcCC-c
Q 008219 506 AVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-------------MAIQDSTRVFTFLVM-V 570 (573)
Q Consensus 506 vilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~-~ 570 (573)
+++|||++++.+|..+ ..|+..+....+ ++|+++|+||+|+.... +..+++.++++.+++ +
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 175 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHFCP----NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYD 175 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCE
Confidence 9999999999999999 578777776543 79999999999997541 345677888888876 4
Q ss_pred cC
Q 008219 571 LY 572 (573)
Q Consensus 571 ~~ 572 (573)
+|
T Consensus 176 ~~ 177 (207)
T 2fv8_A 176 YL 177 (207)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 210
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.81 E-value=3.4e-20 Score=171.37 Aligned_cols=137 Identities=11% Similarity=0.055 Sum_probs=99.5
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCC--CCCCCCCCCCcccEEEEEEEc---CCCeEEEEEEecCChhHHHhhhcccccccc
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGR--PFSDNYTPTTDERYAVNVVDQ---PGGTKKTVVLREIPEEAVAKLLSNKDSLAA 502 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~ 502 (573)
.+||+|+|++|||||||+++|++. .+...+.++.+..+....+.. .+....+.+|||+|++.+..+ ...++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~ 79 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST--HPHFMTQ 79 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTT--SHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHh--hHHHccC
Confidence 369999999999999999999995 444445566665544443332 223557889999999999988 7888999
Q ss_pred ccEEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccc----hhhHHHHHHHcCCc
Q 008219 503 CDIAVFVHDSSDE-SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMA----IQDSTRVFTFLVMV 570 (573)
Q Consensus 503 ~d~vilv~D~~~~-~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~ 570 (573)
++++++|||++++ .+|..+..|+..+....+ +.|+++|+||+|+...+.. ...+++++++++++
T Consensus 80 ~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T 2zej_A 80 RALYLAVYDLSKGQAEVDAMKPWLFNIKARAS----SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFP 148 (184)
T ss_dssp SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT----TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSC
T ss_pred CcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC----CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCc
Confidence 9999999999997 589999999988876543 7999999999999765432 34456777777775
No 211
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.80 E-value=1.7e-19 Score=177.41 Aligned_cols=157 Identities=16% Similarity=0.094 Sum_probs=112.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeecccccCCceeEEEEeCCCCccchh------hhHhhh--c
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG------KLGEEL--R 85 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~ 85 (573)
+.++|+++|++|||||||+|+|++..+. ...+++. .......+...+..+.+|||||+..+.. ....++ .
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVT-VEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSS-CEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeE-EEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 4689999999999999999999987652 2244422 2223344555677899999999987655 344454 6
Q ss_pred cCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCC
Q 008219 86 RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (573)
Q Consensus 86 ~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (573)
.+|++++|+|+++.. ... +|...+.... .+|+++|+||+|+... +.... ....+.+.++. +++++||++|
T Consensus 81 ~~d~vi~v~D~~~~~---~~~-~~~~~~~~~~-~~p~ilv~NK~Dl~~~-~~~~~--~~~~l~~~lg~--~~~~~Sa~~g 150 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNL-FLTLELFEME-VKNIILVLNKFDLLKK-KGAKI--DIKKMRKELGV--PVIPTNAKKG 150 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHH-HHHHHHHHTT-CCSEEEEEECHHHHHH-HTCCC--CHHHHHHHHSS--CEEECBGGGT
T ss_pred CCcEEEEEecCCcch---hhH-HHHHHHHhcC-CCCEEEEEEChhcCcc-cccHH--HHHHHHHHcCC--cEEEEEeCCC
Confidence 899999999988753 222 2444554441 3999999999997653 22222 14556667763 8999999999
Q ss_pred CCchhHHHHHHHHHhCC
Q 008219 166 IQVPEVFYYAQKAVLHP 182 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~~~ 182 (573)
.|++++++.+.+.+...
T Consensus 151 ~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 151 EGVEELKRMIALMAEGK 167 (271)
T ss_dssp BTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999876543
No 212
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.80 E-value=3e-19 Score=165.61 Aligned_cols=121 Identities=14% Similarity=0.229 Sum_probs=100.6
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
.+..+||+|+|.+|||||||+++|+++.+...+.++.+..+. .+.. +...+.+|||+|++.+..+ +..+++.+|
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d 92 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK--GNVTIKLWDIGGQPRFRSM--WERYCRGVS 92 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE--TTEEEEEEEECCSHHHHTT--HHHHHTTCS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEe--CCEEEEEEECCCCHhHHHH--HHHHHccCC
Confidence 456799999999999999999999998887666666665433 3332 4578899999999999888 788899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
++++|||++++.+|..+..|+..+....... ++|+++|+||+|+...
T Consensus 93 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 93 AIVYMVDAADQEKIEASKNELHNLLDKPQLQ--GIPVLVLGNKRDLPGA 139 (188)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCCEEEEEECTTSTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCcccC--CCCEEEEEECCCCccC
Confidence 9999999999999999999998887642212 8999999999999763
No 213
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.80 E-value=3.6e-19 Score=166.38 Aligned_cols=123 Identities=22% Similarity=0.226 Sum_probs=97.7
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCC-CCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 503 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~ 503 (573)
.....||+|+|.+|||||||+++|+++.+.. .+.++.+ .....+. +....+.+|||+|++.+..+ +..+++++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~--~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~ 87 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFE--KGRVAFTVFDMGGAKKFRGL--WETYYDNI 87 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEE--ETTEEEEEEEECCSGGGGGG--GGGGCTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEE--eCCEEEEEEECCCCHhHHHH--HHHHHhcC
Confidence 4566899999999999999999999999887 5566665 3444443 35678999999999999988 88899999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCC-----CCCCCcEEEEEeCCCCccc
Q 008219 504 DIAVFVHDSSDESSWKRATELLVEVASYGED-----TGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 504 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~-----~~~~~p~ilv~nK~Dl~~~ 553 (573)
|++++|||++++.+|..+..|+..+...... ...++|++||+||+|+...
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 9999999999999999999999887664110 0016899999999999765
No 214
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=4.2e-19 Score=187.52 Aligned_cols=162 Identities=16% Similarity=0.170 Sum_probs=115.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCeeecccccCCceeEEEEeCCC----------Cccchhhh
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADT--FPANVPPVLPPTRLPEDFYPDRVPITIIDTPS----------SVEDRGKL 80 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~~~~ 80 (573)
....+||+++|++|||||||+|+|++.. .+...+++.... ....+...+..+.|||||| ++.+....
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~-~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA-VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CT-TSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEE-EEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 3567999999999999999999999765 334455432111 2223444567899999999 45555444
Q ss_pred H-hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc--cCeE
Q 008219 81 G-EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETC 157 (573)
Q Consensus 81 ~-~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (573)
. .+++.+|++|+|+|+++..+.. ...|...+... ++|+++|+||+|+... +....++....+...+.. ..++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~--~~~~~~~~~~~--~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQ--DKRIAGYAHEA--GKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHH--HHHHHHHHHHT--TCEEEEEEECGGGSCC-CSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHH--HHHHHHHHHHc--CCCEEEEEEChhcCCC-chHHHHHHHHHHHHhcccCCCCCE
Confidence 3 4789999999999988765433 33477777764 7999999999999865 334444444444444432 2389
Q ss_pred EEecCCCCCCchhHHHHHHHHHh
Q 008219 158 IECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 158 ~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
++|||++|.|++++|+.+.+.+.
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEEcCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 215
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.79 E-value=7.1e-19 Score=164.54 Aligned_cols=129 Identities=20% Similarity=0.213 Sum_probs=96.8
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
+.+||+++|++|||||||+++|.++.+.. +.++.+.. ...+..++ ..+.+|||+|++.+..+ +..+++.+|++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~--~~~~~~~~d~~ 96 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRV--WKNYLPAINGI 96 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCG--GGGGGGGCSEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHH--HHHHHhcCCEE
Confidence 45799999999999999999999988753 44554443 34455553 78899999999999888 88899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHH
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT 565 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 565 (573)
++|||++++.+|..+..|+..+....... ++|+++|+||+|+.. .+..+++.++++
T Consensus 97 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~~~~~~~~~~~ 152 (198)
T 1f6b_A 97 VFLVDCADHERLLESKEELDSLMTDETIA--NVPILILGNKIDRPE-AISEERLREMFG 152 (198)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGT--TSCEEEEEECTTSTT-CCCHHHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccC--CCcEEEEEECCCccc-cCCHHHHHHHhC
Confidence 99999999999999999999887653222 899999999999975 344556666654
No 216
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=161.96 Aligned_cols=133 Identities=19% Similarity=0.220 Sum_probs=102.8
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCC-CCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRP-FSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 503 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~ 503 (573)
....+||+|+|.+|||||||+++|++.. +...+.++.+ .....+..+ ...+.+|||+|++.+..+ +..+++++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~Dt~G~~~~~~~--~~~~~~~~ 91 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS--SLSFTVFDMSGQGRYRNL--WEHYYKEG 91 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECS--SCEEEEEEECCSTTTGGG--GGGGGGGC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEEC--CEEEEEEECCCCHHHHHH--HHHHHhcC
Confidence 3456899999999999999999999987 4444444444 555666665 368899999999999888 88899999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHH
Q 008219 504 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVF 564 (573)
Q Consensus 504 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 564 (573)
|++++|||++++.+|..+..|+..+.........++|+++|+||+|+... ...++..++.
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~ 151 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA-VTSVKVSQLL 151 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC-CCHHHHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC-CCHHHHHHHh
Confidence 99999999999999999999998887764320017999999999999753 2334444444
No 217
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.79 E-value=5.6e-20 Score=171.45 Aligned_cols=139 Identities=19% Similarity=0.155 Sum_probs=104.8
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCC-----------CCcccEEEEEE-EcCCCeEEEEEEecCChhHHHhh
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTP-----------TTDERYAVNVV-DQPGGTKKTVVLREIPEEAVAKL 493 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~i~dt~G~~~~~~~ 493 (573)
...+||+|+|++|||||||++.+.+.. ...+.+ +.+.++....+ ..++....+.+|||+|++.+..+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 456899999999999999997666543 333222 22222221122 34445668999999999988888
Q ss_pred hccccccccccEEEEEEeCC------ChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHc
Q 008219 494 LSNKDSLAACDIAVFVHDSS------DESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFL 567 (573)
Q Consensus 494 ~~~~~~~~~~d~vilv~D~~------~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 567 (573)
+..+++++|++++|||++ +..+|..+..|+.++..... ++|+++|+||+|+... +..++++++++++
T Consensus 91 --~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~----~~piilv~NK~Dl~~~-~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 91 --RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD----DVPIVIQVNKRDLPDA-LPVEMVRAVVDPE 163 (198)
T ss_dssp --HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTT----SSCEEEEEECTTSTTC-CCHHHHHHHHCTT
T ss_pred --HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccC----CCCEEEEEEchhcccc-cCHHHHHHHHHhc
Confidence 788999999999999999 56788888888888743322 8999999999999763 6678889999988
Q ss_pred CC-ccC
Q 008219 568 VM-VLY 572 (573)
Q Consensus 568 ~~-~~~ 572 (573)
++ +++
T Consensus 164 ~~~~~~ 169 (198)
T 3t1o_A 164 GKFPVL 169 (198)
T ss_dssp CCSCEE
T ss_pred CCceEE
Confidence 88 665
No 218
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.79 E-value=2.4e-18 Score=159.03 Aligned_cols=119 Identities=19% Similarity=0.283 Sum_probs=98.4
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
++.+||+++|++|||||||+++|+++. ...+.++.+ .....+..+ ...+.+|||+|++.+..+ +..+++++|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~ 88 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHR--GFKLNIWDVGGQKSLRSY--WRNYFESTDG 88 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEET--TEEEEEEEECCSHHHHTT--GGGGCTTCSE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEEC--CEEEEEEECCCCHhHHHH--HHHHhcCCCE
Confidence 356899999999999999999999988 445555554 444555554 478899999999999988 8889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
+++|||++++.+|+.+..|+..+....... ++|+++|+||+|+...
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 89 LIWVVDSADRQRMQDCQRELQSLLVEERLA--GATLLIFANKQDLPGA 134 (186)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhChhcC--CCcEEEEEeCccCCCC
Confidence 999999999999999999998887652222 7999999999999764
No 219
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.79 E-value=1.1e-18 Score=163.28 Aligned_cols=141 Identities=17% Similarity=0.255 Sum_probs=116.9
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
..+||+++|++|||||||+++|++..+...+.++.+.++....+.+++....+.+||++|++.+..+ ...+++.++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~--~~~~~~~~~~~ 81 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI--TSAYYRGAVGA 81 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC--CHHHHTTCSEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhh--hHHHHhcCCEE
Confidence 4689999999999999999999999988888888888777777888866678889999999888776 77788899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
++|||+++..+|..+..|+..+...... +.|+++|+||+|+...+ +...+++.++++.++.++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~ 145 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFI 145 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC---CCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEE
Confidence 9999999999999998898877654322 78999999999997654 456778899998887664
No 220
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=4e-19 Score=168.78 Aligned_cols=148 Identities=19% Similarity=0.322 Sum_probs=99.1
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhcc----C
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRR----A 87 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~----a 87 (573)
...+.++|+|+|++|||||||+++|++..+....+...++. ...+ ....+.+|||||++.+...+..+++. +
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS--AADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE--ETTG--GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceE--EEEe--eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 34567999999999999999999999987654322211111 1122 56789999999999988888888877 9
Q ss_pred CEEEEEEeCC-CcccHHHHHHHHHHHHHh-----cCCCCcEEEEEeCCCCCCCccccc-H----HHHHHHHHHHhcccCe
Q 008219 88 DAVVLTYACD-RPETLDELSTFWLPELRR-----LEVKVPVIVVGCKLDLRDENQQVS-L----EQVMMPIMQQFREIET 156 (573)
Q Consensus 88 d~il~v~D~~-~~~s~~~~~~~~~~~l~~-----~~~~~piilv~NK~D~~~~~~~~~-~----~~~~~~~~~~~~~~~~ 156 (573)
|++++|+|++ ++.++..... |+..+.. ...++|+++|+||+|+... +... . .+....+....+ .+
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~l~~~~~~~~~~~~--~~ 159 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTA-RPPSKIKDALESEIQKVIERRK--KS 159 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTC-CCHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred CEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhccc-CCHHHHHHHHHHHHHHHHHHHh--cc
Confidence 9999999999 8889988886 5554432 2358999999999999876 2221 1 222333333333 26
Q ss_pred EEEecCCCCCC
Q 008219 157 CIECSALKQIQ 167 (573)
Q Consensus 157 ~~~~Sa~~~~g 167 (573)
++++||++|.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 89999998865
No 221
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.78 E-value=1.5e-18 Score=161.18 Aligned_cols=128 Identities=20% Similarity=0.210 Sum_probs=101.0
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEE
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 506 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~v 506 (573)
+.+||+++|++|||||||+++|.++.+.. +.++.+. ....+..++ ..+.+|||+|++.+..+ +..+++.+|++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~ 94 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRL--WKDYFPEVNGI 94 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTS--GGGGCTTCCEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHH--HHHHHhcCCEE
Confidence 34699999999999999999999988753 4455444 345566653 78899999999988887 78889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHH
Q 008219 507 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVF 564 (573)
Q Consensus 507 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 564 (573)
++|||++++.||+.+..|+..+....... ++|+++|+||+|+.. .+..++..+++
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~~~~~~~~~~ 149 (190)
T 1m2o_B 95 VFLVDAADPERFDEARVELDALFNIAELK--DVPFVILGNKIDAPN-AVSEAELRSAL 149 (190)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCCEEEEEECTTSTT-CCCHHHHHHHT
T ss_pred EEEEECCChHHHHHHHHHHHHHHcchhhc--CCCEEEEEECCCCcC-CCCHHHHHHHh
Confidence 99999999999999999998887643222 899999999999976 33344444443
No 222
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.78 E-value=1.1e-18 Score=157.62 Aligned_cols=116 Identities=22% Similarity=0.252 Sum_probs=95.1
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEE
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 508 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vil 508 (573)
+||+++|++|||||||+++|+++.+.. +.++.+ .....+.. +...+.+|||+|++.+..+ +..+++++|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~~i~ 73 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQGLIF 73 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEEC--SSCEEEEEECCCCGGGHHH--HHHHTTTCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEE--CCEEEEEEEcCCChhhHHH--HHHHhccCCEEEE
Confidence 489999999999999999999887764 345544 33344444 3468899999999998887 7788999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 509 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 509 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
|||++++.||..+..|+..+....... ++|+++|+||+|+...
T Consensus 74 v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 74 VVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNA 116 (164)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhc--CCeEEEEEECcCCcCC
Confidence 999999999999999998887643222 7999999999999763
No 223
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.78 E-value=1.4e-18 Score=159.90 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=96.1
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
..+.+||+|+|.+|||||||+++|+++.+ ..+.++.+... ..+... ...+.+|||+|.+.+..+ +..+++++|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 90 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSS--WNTYYTNTE 90 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEET--TEEEEEEEESSSGGGTCG--GGGGGTTCC
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEEC--CEEEEEEECCCCHhHHHH--HHHHhccCC
Confidence 45568999999999999999999999887 33344544332 344444 378899999999998888 888999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
++++|||++++.+|+.+..|+..+....... ++|+++|+||+|+..
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHEDLR--KAGLLIFANKQDVKE 136 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhC--CCeEEEEEECCCccc
Confidence 9999999999999999999998887652112 899999999999976
No 224
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.78 E-value=3.6e-18 Score=155.24 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=97.7
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
++.+||+|+|++|||||||+++|.++.+.. +.++.+ .....+... ...+.+|||+|.+.+..+ +..+++++|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~ 77 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYK--NLKFQVWDLGGLTSIRPY--WRCYYSNTDA 77 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEET--TEEEEEEEECCCGGGGGG--GGGGCTTCSE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEEC--CEEEEEEECCCChhhhHH--HHHHhccCCE
Confidence 345899999999999999999999888753 334444 344445554 578899999999998888 8889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
+++|||++++.+|.....|+..+....... ++|+++|+||+|+...
T Consensus 78 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 78 VIYVVDSCDRDRIGISKSELVAMLEEEELR--KAILVVFANKQDMEQA 123 (171)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhchhhC--CCEEEEEEECCCCcCC
Confidence 999999999999999999998877653212 8999999999999764
No 225
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.78 E-value=1.4e-18 Score=173.73 Aligned_cols=139 Identities=9% Similarity=0.081 Sum_probs=105.0
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCC-CCCCcccEEEEEEEcCCCeEEEEEEecCChhHH-----Hhhhcccccc
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV-----AKLLSNKDSL 500 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~-----~~~~~~~~~~ 500 (573)
..+||+++|++|||||||+++|+++...... .+..|.......+.+. +...+.+|||+|++.+ ..+ +..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~--~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL-GNMTLNLWDCGGQDVFMENYFTKQ--KDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEET-TTEEEEEEEECCSHHHHHHHHTTT--HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeC-CceEEEEEECCCcHHHhhhhhhhH--HHHHh
Confidence 3579999999999999999999987443322 2222333333444444 4678999999999888 455 67788
Q ss_pred ccccEEEEEEeCCChhhHHHHHHHHH---HHHhcCCCCCCCCcEEEEEeCCCCcc--cc-----cchhhHHHHHHHcC--
Q 008219 501 AACDIAVFVHDSSDESSWKRATELLV---EVASYGEDTGFEVPCLIVAAKDDLDS--FA-----MAIQDSTRVFTFLV-- 568 (573)
Q Consensus 501 ~~~d~vilv~D~~~~~s~~~~~~~~~---~~~~~~~~~~~~~p~ilv~nK~Dl~~--~~-----~~~~~~~~~~~~~~-- 568 (573)
+++|++++|||++++.+|+.+..|.. .+....+ ++|+++|+||+|+.. .+ +..++++++++++|
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~----~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~ 154 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSP----DAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP 154 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCT----TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCC----CCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999977644 4443333 799999999999976 33 44588899999987
Q ss_pred -CccC
Q 008219 569 -MVLY 572 (573)
Q Consensus 569 -~~~~ 572 (573)
+++|
T Consensus 155 ~~~~~ 159 (307)
T 3r7w_A 155 NLIGF 159 (307)
T ss_dssp SCEEE
T ss_pred CeEEE
Confidence 4554
No 226
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.77 E-value=7.4e-19 Score=177.14 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=114.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeecccccCC-ceeEEEEeCCCCcc----chhhhHhh---hccCC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPD-RVPITIIDTPSSVE----DRGKLGEE---LRRAD 88 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~----~~~~~~~~---~~~ad 88 (573)
+|+|+|.+|||||||+|+|++.... .+++.+.-..... .+... ...+.||||||+.+ ...+...+ ++.+|
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g-~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG-MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE-EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE-EEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 5899999999999999999987632 2344321111111 12222 36899999999643 22233334 55699
Q ss_pred EEEEEEeCCC---cccHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecC
Q 008219 89 AVVLTYACDR---PETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (573)
Q Consensus 89 ~il~v~D~~~---~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (573)
++|+|+|+++ +.+++.+.. |..++..+. .++|+++|+||+|+... .+....+...+....++++|||
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~-~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~------~e~~~~l~~~l~~~~~v~~iSA 311 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLT-INQELSEYNLRLTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPISA 311 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHH-HHHHHHHSCSSTTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCCSS
T ss_pred EEEEEEECCcccccChHHHHHH-HHHHHHHhhhhhcCCCEEEEEECccCCCC------HHHHHHHHHHhhcCCCEEEEEC
Confidence 9999999998 788888874 888888764 47999999999998764 1334455566653237899999
Q ss_pred CCCCCchhHHHHHHHHHhCCC
Q 008219 163 LKQIQVPEVFYYAQKAVLHPT 183 (573)
Q Consensus 163 ~~~~gi~~l~~~i~~~~~~~~ 183 (573)
+++.|++++++.+.+.+....
T Consensus 312 ~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 312 VTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp CCSSTTHHHHHHHHHHHTSCC
T ss_pred CCCcCHHHHHHHHHHHHhhCc
Confidence 999999999999998875443
No 227
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.77 E-value=1.7e-18 Score=160.91 Aligned_cols=142 Identities=17% Similarity=0.232 Sum_probs=119.7
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++....+.+||++|.+++..+ ...+++.+++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~--~~~~~~~~~~ 104 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI--TSAYYRGAVG 104 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCC--CHHHHTTCCE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhh--hHHHhhcCCE
Confidence 45689999999999999999999999988888888888887788888865667788999999887776 7778889999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
+++|||+++..+|+.+..|+..+...... +.|+++|+||+|+...+ +...+++.++++.++.++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~l 169 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFI 169 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999988888777654322 78999999999997654 456788899998887664
No 228
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.77 E-value=3.9e-19 Score=166.00 Aligned_cols=139 Identities=11% Similarity=0.054 Sum_probs=100.5
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEE--EEEc-CCCeEEEEEEecCChhHHHhhhcc---cc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVN--VVDQ-PGGTKKTVVLREIPEEAVAKLLSN---KD 498 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~i~dt~G~~~~~~~~~~---~~ 498 (573)
.+..+||+++|++|||||||++++.+..... ++.+..+... ...+ .+....+.+|||+|++.|... . ..
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~ 91 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP--TFDYEM 91 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT--TCCHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh--hhhccc
Confidence 4566899999999999999999988854322 2222222211 1222 245678999999999988766 4 68
Q ss_pred ccccccEEEEEEeCCCh--hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------c-cchhhHHHHHH---
Q 008219 499 SLAACDIAVFVHDSSDE--SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------A-MAIQDSTRVFT--- 565 (573)
Q Consensus 499 ~~~~~d~vilv~D~~~~--~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------~-~~~~~~~~~~~--- 565 (573)
+++++|++++|||++++ +++..+..|+..+..... ++|++||+||+|+... + +...+++++++
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP----DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT----TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC----CCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 89999999999999997 677788888887754433 8999999999998542 2 34566777887
Q ss_pred -HcCCccC
Q 008219 566 -FLVMVLY 572 (573)
Q Consensus 566 -~~~~~~~ 572 (573)
.++++||
T Consensus 168 ~~~~~~~~ 175 (196)
T 3llu_A 168 EKLHLSFY 175 (196)
T ss_dssp TTSCEEEE
T ss_pred hcCCcceE
Confidence 6666665
No 229
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=9.9e-19 Score=161.84 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=93.7
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
+..+||+|+|.+|||||||+++|+++.+. .+.++.+.. ...+... ...+.+|||+|.+.+..+ +..+++++|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 86 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVIN--NTRFLMWDIGGQESLRSS--WNTYYTNTEF 86 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEET--TEEEEEEECCC----CGG--GHHHHTTCCE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEEC--CEEEEEEECCCCHhHHHH--HHHHhcCCCE
Confidence 45689999999999999999999988876 444554432 2334444 478899999999998888 7888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
+++|||++++.||+.+..|+..+....... +.|+++|+||+|+..
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 87 VIVVVDSTDRERISVTREELYKMLAHEDLR--KAGLLIFANKQDVKE 131 (187)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTSGGGT--TCEEEEEEECTTSTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhchhhC--CCeEEEEEECCCCcC
Confidence 999999999999999999998887753222 899999999999975
No 230
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.77 E-value=1.9e-18 Score=159.17 Aligned_cols=119 Identities=24% Similarity=0.329 Sum_probs=96.7
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+++|++|||||||+++|.++.+. .+.++.+ +....+..+ ...+.+|||+|++.+..+ +..+++.+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~--~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~ 86 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQ--GFKLNVWDIGGQRKIRPY--WRSYFENTDI 86 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEET--TEEEEEEECSSCGGGHHH--HHHHHTTCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEEC--CEEEEEEECCCCHHHHHH--HHHHhCCCCE
Confidence 45689999999999999999999998653 2334444 344455554 468889999999998887 7788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
+++|||++++.+|..+..|+..+....... ++|+++|+||+|+...
T Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 87 LIYVIDSADRKRFEETGQELTELLEEEKLS--CVPVLIFANKQDLLTA 132 (181)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHTTCGGGT--TCCEEEEEECTTSTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECcCcccC
Confidence 999999999999999999998876542222 7999999999999764
No 231
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.77 E-value=1.6e-18 Score=161.36 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=92.8
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
.++.+||+|+|++|||||||+++|+++.+.. +.++.+ +....+.. +...+.+|||+|.+.+..+ +..+++++|
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~--~~~~~~~~d 98 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPL--WRHYFQNTQ 98 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEE--TTEEEEEEECC-----CTT--HHHHHHTCC
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHH--HHHHhccCC
Confidence 3456899999999999999999999888653 334433 44444444 3478899999999988887 778899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
++++|||++++.+|..+..|+..+....... ++|+++|+||+|+...
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~--~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELR--DAVLLVFANKQDMPNA 145 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccC--CCeEEEEEECCCCCCC
Confidence 9999999999999999999998887643222 7999999999999763
No 232
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.76 E-value=3.7e-18 Score=169.98 Aligned_cols=157 Identities=18% Similarity=0.177 Sum_probs=108.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCCCCeeecccccCCceeEEEEeCCCCc-cc--------hhhhHh
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPA--NVPPVLPPTRLPEDFYPDRVPITIIDTPSSV-ED--------RGKLGE 82 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~~--------~~~~~~ 82 (573)
.+..+|+|+|++|||||||+|+|++..+.. ..+++.. .+....+..++..+.+|||||+. .. ......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr-~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR-HRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCS-SCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcce-eeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 345689999999999999999999987532 2333211 11223345567889999999987 22 223346
Q ss_pred hhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecC
Q 008219 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (573)
Q Consensus 83 ~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (573)
+++.+|++++|+|+++ +......+...+... +.|+++|+||+|+... + ....+....+...++. ..++++||
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~~--~~P~ilvlNK~D~~~~-~-~~~~~~l~~l~~~~~~-~~~i~iSA 156 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLREG--KAPVILAVNKVDNVQE-K-ADLLPHLQFLASQMNF-LDIVPISA 156 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHHSS--SSCEEEEEESTTTCCC-H-HHHHHHHHHHHTTSCC-SEEEECCT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHHhc--CCCEEEEEECcccCcc-H-HHHHHHHHHHHHhcCc-CceEEEEC
Confidence 7899999999999876 333333344555543 7999999999998862 1 1222333334343432 36999999
Q ss_pred CCCCCchhHHHHHHHHH
Q 008219 163 LKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 163 ~~~~gi~~l~~~i~~~~ 179 (573)
++|.|++++++.+.+.+
T Consensus 157 ~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp TTTTTHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 99999999999998754
No 233
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.62 E-value=3.9e-20 Score=173.94 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=111.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
+..+||+|+|.+|||||||+++|+++.+...+.++.+..+. ..+..++....+.+|||+|++.+..+ +..+++++|+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~d~ 104 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRL--RPLSYPQTDV 104 (204)
Confidence 45689999999999999999999998887666555544332 33455545567779999999999888 8889999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-c
Q 008219 506 AVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-V 570 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~ 570 (573)
+++|||++++.+|+.+. .|+..+....+ ++|+++|+||+|+... .+..+++.++++.+++ +
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~----~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180 (204)
Confidence 99999999999999987 77777766543 7999999999999754 2335667778888776 5
Q ss_pred cC
Q 008219 571 LY 572 (573)
Q Consensus 571 ~~ 572 (573)
++
T Consensus 181 ~~ 182 (204)
T 3th5_A 181 YL 182 (204)
Confidence 54
No 234
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=5.7e-18 Score=177.95 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=111.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhh------------
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGK------------ 79 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------ 79 (573)
...+||+|+|++|||||||+|+|++... +...+++.... ....+..++..+.+|||+|+......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~-~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDP-VDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCc-eEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 3468999999999999999999998764 44555532111 22334445668999999998533221
Q ss_pred hHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc--cCeE
Q 008219 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETC 157 (573)
Q Consensus 80 ~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (573)
...+++.+|++++|+|+++..+..+.. +...+... ++|+++|+||+|+... +....++....+...+.. ..++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~--i~~~l~~~--~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQR--MAGLMERR--GRASVVVFNKWDLVVH-REKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHHT--TCEEEEEEECGGGSTT-GGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECccCCCc-hhhHHHHHHHHHHHHhccCCCCcE
Confidence 135688999999999999877766532 55555554 7999999999999765 233333333344444432 2389
Q ss_pred EEecCCCCCCchhHHHHHHHHH
Q 008219 158 IECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 158 ~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
+++||++|.|++++++.+.+.+
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 235
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.76 E-value=4.7e-18 Score=157.50 Aligned_cols=119 Identities=19% Similarity=0.177 Sum_probs=97.4
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
++.+||+|+|++|||||||+++|.++.+.. +.++.+ .....+... ...+.+|||+|++.+..+ +..+++++|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~--~~~~~~~~d~ 92 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYK--NISFEVWDLGGQTGVRPY--WRCYFSDTDA 92 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEET--TEEEEEEEECCSSSSCCC--CSSSSTTCCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEEC--CEEEEEEECCCCHhHHHH--HHHHhhcCCE
Confidence 356899999999999999999999887653 344544 333444444 578899999999988887 8889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
+++|||++++.+|..+..|+..+....... ++|+++|+||+|+...
T Consensus 93 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 93 VIYVVDSTDRDRMGVAKHELYALLDEDELR--KSLLLIFANKQDLPDA 138 (189)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTCSTTT--TCEEEEEEECTTSTTC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhhcC--CCeEEEEEECCCCcCC
Confidence 999999999999999999998887653322 8999999999999764
No 236
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.75 E-value=7.3e-19 Score=181.78 Aligned_cols=158 Identities=18% Similarity=0.218 Sum_probs=107.4
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCC-eeecccccCCceeEEEEeCCCCccchhh-------h
Q 008219 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFP--ANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGK-------L 80 (573)
Q Consensus 11 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~ 80 (573)
......++|+|+|++|||||||+|+|++..+. ...+++... ......+.. ...+.+|||||+.++... .
T Consensus 29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHP-IGPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp ---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETT-TEEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECC-CCeEEEEECcCCCcccchhHHHHHHH
Confidence 34456799999999999999999999988753 234432111 112223222 238999999999876543 3
Q ss_pred HhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEe
Q 008219 81 GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIEC 160 (573)
Q Consensus 81 ~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (573)
..++..+|++|+|+|++ .......|+..++.. ++|+++|+||+|+.... .. +....+...++ .+++++
T Consensus 108 ~~~l~~aD~vllVvD~~----~~~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~-~~---~~~~~l~~~~g--~~v~~v 175 (423)
T 3qq5_A 108 RRVFYRADCGILVTDSA----PTPYEDDVVNLFKEM--EIPFVVVVNKIDVLGEK-AE---ELKGLYESRYE--AKVLLV 175 (423)
T ss_dssp HHHHTSCSEEEEECSSS----CCHHHHHHHHHHHHT--TCCEEEECCCCTTTTCC-CT---HHHHHSSCCTT--CCCCCC
T ss_pred HHHHhcCCEEEEEEeCC----ChHHHHHHHHHHHhc--CCCEEEEEeCcCCCCcc-HH---HHHHHHHHHcC--CCEEEE
Confidence 46789999999999972 223334588888876 89999999999998762 21 22233333343 289999
Q ss_pred cCCCCCCchhHHHHHHHHHhC
Q 008219 161 SALKQIQVPEVFYYAQKAVLH 181 (573)
Q Consensus 161 Sa~~~~gi~~l~~~i~~~~~~ 181 (573)
||++|.|++++++.+.+.+..
T Consensus 176 SAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHSCC
T ss_pred ECCCCCCHHHHHHHHHHhhhh
Confidence 999999999999999998743
No 237
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.75 E-value=1.5e-17 Score=172.70 Aligned_cols=166 Identities=17% Similarity=0.121 Sum_probs=115.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CC----------CCCCeee-----ccccc---CCceeEEEEeCC
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANV--PP----------VLPPTRL-----PEDFY---PDRVPITIIDTP 71 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~--~~----------~~~~~~~-----~~~~~---~~~~~~~i~Dt~ 71 (573)
..++.++|+++|++|+|||||+|+|++....... .. ....... ..... .....+.|||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 3467899999999999999999999975322110 00 0000000 00001 112789999999
Q ss_pred CCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHh
Q 008219 72 SSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF 151 (573)
Q Consensus 72 G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~ 151 (573)
|++.+.......+..+|++++|+|+++..+.....+ |+..++..+ ..|+++|+||+|+.... ...+....+...+
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~~-~~~iivviNK~Dl~~~~---~~~~~~~~i~~~l 158 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGIIG-VKNLIIVQNKVDVVSKE---EALSQYRQIKQFT 158 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHHT-CCCEEEEEECGGGSCHH---HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHcC-CCCEEEEEECccccchH---HHHHHHHHHHHHH
Confidence 999999888899999999999999998876666554 666666553 35999999999998751 1112222333322
Q ss_pred c----ccCeEEEecCCCCCCchhHHHHHHHHHhCC
Q 008219 152 R----EIETCIECSALKQIQVPEVFYYAQKAVLHP 182 (573)
Q Consensus 152 ~----~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 182 (573)
. ...+++++||++|.|+++|++.+.+.+..+
T Consensus 159 ~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 159 KGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 1 123799999999999999999998865443
No 238
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=5.1e-18 Score=156.20 Aligned_cols=119 Identities=19% Similarity=0.172 Sum_probs=93.8
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
++.+||+|+|++|||||||+++|+++.+ ..+.++.+. ....+... ...+.+|||+|.+.+... +..+++++|+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~--~~~~~~~~--~~~~~i~Dt~G~~~~~~~--~~~~~~~~d~ 88 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF--NVETLSYK--NLKLNVWDLGGQTSIRPY--WRCYYADTAA 88 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC--CEEEEEET--TEEEEEEEEC----CCTT--GGGTTTTEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc--ceEEEEEC--CEEEEEEECCCCHhHHHH--HHHHhccCCE
Confidence 4568999999999999999999998877 344455553 33444444 378899999999888877 7888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
+++|||++++.+|+.+..|+..+....... ++|+++|+||+|+...
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 89 VIFVVDSTDKDRMSTASKELHLMLQEEELQ--DAALLVFANKQDQPGA 134 (183)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHTTSSTTS--SCEEEEEEECTTSTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHcChhhC--CCeEEEEEECCCCCCC
Confidence 999999999999999999998887653222 8999999999999763
No 239
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.75 E-value=1.3e-17 Score=170.34 Aligned_cols=158 Identities=20% Similarity=0.200 Sum_probs=111.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeecccccCCceeEEEEeCCCCccch---------hhhHhh
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDR---------GKLGEE 83 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~ 83 (573)
...++|+++|.+|||||||+|+|++.... ...+.+..... ...+...+..+.+|||||+.... ......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGIN-VGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEE-EEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeecee-EEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 46789999999999999999999987642 22333211111 12233346789999999986432 112234
Q ss_pred hccCCEEEEEEeCCCcc--cHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEec
Q 008219 84 LRRADAVVLTYACDRPE--TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (573)
Q Consensus 84 ~~~ad~il~v~D~~~~~--s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (573)
...+|++++|+|+++.. ++..... |+..+.....++|+++|+||+|+... .. .++ ........+ .++++||
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~-~~~~i~~~~~~~piilV~NK~Dl~~~-~~--~~~-~~~~~~~~~--~~~~~iS 316 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIH-LFEEVHGEFKDLPFLVVINKIDVADE-EN--IKR-LEKFVKEKG--LNPIKIS 316 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHH-HHHHHHHHTTTSCEEEEECCTTTCCH-HH--HHH-HHHHHHHTT--CCCEECB
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHH-HHHHHHHhcCCCCEEEEEECcccCCh-HH--HHH-HHHHHHhcC--CCeEEEe
Confidence 55799999999999877 6666654 88888765448999999999999865 11 122 222333333 3799999
Q ss_pred CCCCCCchhHHHHHHHHH
Q 008219 162 ALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 162 a~~~~gi~~l~~~i~~~~ 179 (573)
|++|.|++++++.+.+.+
T Consensus 317 A~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 999999999999998865
No 240
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.74 E-value=3.4e-18 Score=167.08 Aligned_cols=167 Identities=16% Similarity=0.131 Sum_probs=105.1
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCC-CCCeeecccccCCceeEEEEeCCCCccchhh----------
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADT-FPANVPPV-LPPTRLPEDFYPDRVPITIIDTPSSVEDRGK---------- 79 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------- 79 (573)
...+.++|+|+|++|||||||+|+|++.. +.....+. .........+.+.+..+.||||||+..+...
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 34567999999999999999999999877 33333221 1111122234456788999999998765321
Q ss_pred -hHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEe-CCCCCCCcccccH--H----HHHHHHH
Q 008219 80 -LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLE---VKVPVIVVGC-KLDLRDENQQVSL--E----QVMMPIM 148 (573)
Q Consensus 80 -~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~N-K~D~~~~~~~~~~--~----~~~~~~~ 148 (573)
...+++.+|++|+|+|+++ +......+...+.... .+.|+++|+| |+|+... . ... . .....+.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~-~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-S-LMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-C-HHHHHHHCCCHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCC---CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-c-HHHHHHhcchHHHHHHH
Confidence 2236789999999999986 2222222334443321 1457776666 9999754 1 110 0 1123344
Q ss_pred HHhcccC-eE--EEecCCCCCCchhHHHHHHHHHhCCC
Q 008219 149 QQFREIE-TC--IECSALKQIQVPEVFYYAQKAVLHPT 183 (573)
Q Consensus 149 ~~~~~~~-~~--~~~Sa~~~~gi~~l~~~i~~~~~~~~ 183 (573)
..++... .+ +++||++|.|++++|+.+.+.+....
T Consensus 173 ~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 173 AACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 5554311 12 78999999999999999998775443
No 241
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.74 E-value=4.2e-18 Score=154.28 Aligned_cols=132 Identities=16% Similarity=0.142 Sum_probs=95.0
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHH------hhhccccccc
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA------KLLSNKDSLA 501 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~------~~~~~~~~~~ 501 (573)
.++|+++|++|||||||+++|.+..+.....++.+.......+... ...+.+|||+|++.+. .+ ...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~--~~~~~~ 78 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEII--ARDYII 78 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSSSSSHHHHH--HHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCCCcchhHHH--HHHHHh
Confidence 4799999999999999999999977654444544444444555554 3678899999987653 23 344554
Q ss_pred --cccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 502 --ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 502 --~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
++|++++|+|+++.+ ....|+..+... ++|+++|+||+|+...+....++++++++++++++
T Consensus 79 ~~~~~~~i~v~D~~~~~---~~~~~~~~~~~~------~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 142 (165)
T 2wji_A 79 NEKPDLVVNIVDATALE---RNLYLTLQLMEM------GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVV 142 (165)
T ss_dssp HHCCSEEEEEEETTCHH---HHHHHHHHHHHT------TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEE
T ss_pred cCCCCEEEEEecCCchh---HhHHHHHHHHhc------CCCEEEEEEchHhccccChhhHHHHHHHHhCCCEE
Confidence 899999999998754 344577666553 79999999999997654333467889998888765
No 242
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.74 E-value=9.6e-18 Score=169.88 Aligned_cols=140 Identities=19% Similarity=0.257 Sum_probs=114.1
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
+..+||+++|.+|||||||+++|+++.+...+.++.+..+ ...+..++....+.+|||+|.+.+..+ +..+++.+|+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 229 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRL--RPLSYPQTDV 229 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTT--GGGGCTTCSE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHH--HHHhccCCCE
Confidence 4568999999999999999999999888766666555433 344556655667889999999998887 8889999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-c
Q 008219 506 AVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-V 570 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~ 570 (573)
+++|||++++.+|..+. .|+..+..... ++|+++|+||+|+... .+..+++.++++.+++ +
T Consensus 230 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 305 (332)
T 2wkq_A 230 FLICFSLVSPASFHHVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 305 (332)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhhCC----CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcE
Confidence 99999999999999997 68877776654 7999999999999653 2446788889999886 5
Q ss_pred cC
Q 008219 571 LY 572 (573)
Q Consensus 571 ~~ 572 (573)
+|
T Consensus 306 ~~ 307 (332)
T 2wkq_A 306 YL 307 (332)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 243
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.73 E-value=6.5e-19 Score=186.78 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=112.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCeeeccccc-CCceeEEEEeCCCCccchhhhHhhhccCCEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANV-PPVLPPTRLPEDFY-PDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~ 92 (573)
+..+|+++|++|+|||||+++|.+..+.... +++.... ....+. ..+..+.||||||++.+..+...+++.+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i-~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI-GAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT-TSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE-eEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4678999999999999999999987654332 2211111 111122 245689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHH---HHHhcccCeEEEecCCCCCCch
Q 008219 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPI---MQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 93 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
|+|+++....+... ++..+... ++|+++|+||+|+....... ........ ...++...+++++||++|.|++
T Consensus 82 VVDa~dg~~~qt~e--~l~~~~~~--~vPiIVViNKiDl~~~~~~~-v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQTVE--SIQHAKDA--HVPIVLAINKCDKAEADPEK-VKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHHHHH--HHHHHHTT--TCCEEECCBSGGGTTTSCCS-SSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHHHHH--HHHHHHHc--CCcEEEEEecccccccchHH-HHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 99999876665544 44555544 78999999999987542111 11111111 1112222389999999999999
Q ss_pred hHHHHHHHHHh
Q 008219 170 EVFYYAQKAVL 180 (573)
Q Consensus 170 ~l~~~i~~~~~ 180 (573)
++++.+...+.
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999988653
No 244
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.73 E-value=1.8e-17 Score=156.76 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=90.3
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCC-eEEEEEEecCChhHHHh-hhccccccccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGG-TKKTVVLREIPEEAVAK-LLSNKDSLAAC 503 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~dt~G~~~~~~-~~~~~~~~~~~ 503 (573)
+..+||+|+|++|||||||+++|+++.+...+. +.+.... .+.+++. ...+.+|||+|++.+.. + +..+++.+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~ 79 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQL--LDRFKSSA 79 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHH--HHHHGGGE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeE--EEEecCCCccEEEEEECCCChhHHHHH--HHHHHhhC
Confidence 345799999999999999999999988776664 3333232 3555543 57899999999999887 6 67789999
Q ss_pred cEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 504 DIAVFVHDSSDES-SWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 504 d~vilv~D~~~~~-s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
|++++|||+++.. ++.....++..+.........++|+++|+||+|+...+
T Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred CEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 9999999999853 46666655544432210000179999999999997654
No 245
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.73 E-value=2e-18 Score=170.61 Aligned_cols=132 Identities=12% Similarity=0.117 Sum_probs=96.8
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCC---CCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHh---hhccccccccc
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSD---NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK---LLSNKDSLAAC 503 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~---~~~~~~~~~~~ 503 (573)
||+++|++|||||||++++.++.... ...+|.+..+.. + . ...+++||||+|+++|.. . +..+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~--~~~yyr~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYD--SERLFKSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHH--HHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhh--hhhhccCC
Confidence 68999999999999999988764432 245666655542 2 3 457899999999999853 3 56789999
Q ss_pred cEEEEEEeCCCh--hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------c-cchhhHHHHHHH----cCC
Q 008219 504 DIAVFVHDSSDE--SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------A-MAIQDSTRVFTF----LVM 569 (573)
Q Consensus 504 d~vilv~D~~~~--~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------~-~~~~~~~~~~~~----~~~ 569 (573)
+++|+|||++++ +++.....|+..+....+ ++|+++||||+|+... + +..++++++|+. +++
T Consensus 74 ~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~----~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i 149 (331)
T 3r7w_B 74 GALVYVIDSQDEYINAITNLAMIIEYAYKVNP----SINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQV 149 (331)
T ss_dssp SEEEEECCCSSCTTHHHHHHHHHHHHHHHHCT----TCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCE
T ss_pred CEEEEEEECCchHHHHHHHHHHHHHHHhhcCC----CCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCc
Confidence 999999999998 333333344555544433 8999999999999753 2 446677888885 677
Q ss_pred ccC
Q 008219 570 VLY 572 (573)
Q Consensus 570 ~~~ 572 (573)
+||
T Consensus 150 ~f~ 152 (331)
T 3r7w_B 150 SFY 152 (331)
T ss_dssp EEE
T ss_pred eEE
Confidence 776
No 246
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.73 E-value=2.7e-17 Score=159.16 Aligned_cols=168 Identities=18% Similarity=0.184 Sum_probs=105.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCcc--------chhhhHh
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVE--------DRGKLGE 82 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~ 82 (573)
....+||+|+|.+|||||||+|+|++..+.....+..++|. ....+...+..+.||||||+.. +...+..
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 35689999999999999999999999886544222211222 2334456678999999999743 2222333
Q ss_pred hh----ccCCEEEEEEeCCCcccHHHHHHHHHHHHHhc-C---CCCcEEEEEeCCCCCCCcccccHH----HHHHHHHHH
Q 008219 83 EL----RRADAVVLTYACDRPETLDELSTFWLPELRRL-E---VKVPVIVVGCKLDLRDENQQVSLE----QVMMPIMQQ 150 (573)
Q Consensus 83 ~~----~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~-~---~~~piilv~NK~D~~~~~~~~~~~----~~~~~~~~~ 150 (573)
++ +.+|++|+|+|+++. ......+++.+... . .+.|+|||+||+|+.......... +.+..+...
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~---~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRF---TAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBC---CHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCCCC---CHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHH
Confidence 33 999999999998752 22222244444432 1 268999999999997641110010 234566666
Q ss_pred hcccCeEEEecCCC-----CCCchhHHHHHHHHHhCCCCC
Q 008219 151 FREIETCIECSALK-----QIQVPEVFYYAQKAVLHPTGP 185 (573)
Q Consensus 151 ~~~~~~~~~~Sa~~-----~~gi~~l~~~i~~~~~~~~~~ 185 (573)
++. .++.+++.. +.|+.+|++.+.+.+......
T Consensus 175 ~g~--~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~ 212 (247)
T 3lxw_A 175 CGG--RVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGA 212 (247)
T ss_dssp TTT--CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCC--eEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCC
Confidence 664 566666554 579999999988876544333
No 247
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.73 E-value=2.2e-17 Score=174.81 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=110.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCC----C---CCC-CCCCCCCee--ecccccCCceeEEEEeCCCCccchhhhH
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADT----F---PAN-VPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLG 81 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~----~---~~~-~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (573)
..++.++|+++|++++|||||+++|++.. . ... .++ .|. ....+...+..+.||||||++++.....
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~G---iTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~ 91 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRG---ITIDIGFSAFKLENYRITLVDAPGHADLIRAVV 91 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------CCCEEEETTEEEEECCCSSHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCc---cEEecceEEEEECCEEEEEEECCChHHHHHHHH
Confidence 34678999999999999999999999865 1 111 111 111 1112233568999999999998888888
Q ss_pred hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHh-cc-cCeEEE
Q 008219 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF-RE-IETCIE 159 (573)
Q Consensus 82 ~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ 159 (573)
..+..+|++|+|+|+++...-+... ++..++.. ++|+++|+||+|+..........+.+..+.... +. ..++++
T Consensus 92 ~~~~~aD~~ilVvda~~g~~~qt~e--~l~~~~~~--~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 92 SAADIIDLALIVVDAKEGPKTQTGE--HMLILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp HHTTSCCEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred HHHhhCCEEEEEEecCCCccHHHHH--HHHHHHHc--CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 8999999999999998843222221 33344444 789999999999986411111122223333322 11 238999
Q ss_pred ecCCCCCCchhHHHHHHHHHh
Q 008219 160 CSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 160 ~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
+||++|.|++++++.+.+.+.
T Consensus 168 vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 168 ISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHhhc
Confidence 999999999999999988764
No 248
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=158.10 Aligned_cols=163 Identities=14% Similarity=0.120 Sum_probs=100.9
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--ecccccCCceeEEEEeCCCCccc-----------hh
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVED-----------RG 78 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~-----------~~ 78 (573)
.....+||+|+|++|||||||+|+|++..+.....+....+. ....+...+..+.||||||.... ..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 345679999999999999999999999876444221111111 22334456778999999996532 22
Q ss_pred hhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCccccc-----HHHHHHHHHHH
Q 008219 79 KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRL---EVKVPVIVVGCKLDLRDENQQVS-----LEQVMMPIMQQ 150 (573)
Q Consensus 79 ~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~D~~~~~~~~~-----~~~~~~~~~~~ 150 (573)
....+++.+|++|+|+|+++.... .. .|+..+... ....|+++|+||+|+... ..+. ..+.+..+...
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~-~~--~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~-~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEE-EH--KATEKILKMFGERARSFMILIFTRKDDLGD-TNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSH-HH--HHHHHHHHHHHHHHGGGEEEEEECGGGC-------------CHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHH-HH--HHHHHHHHHhhhhccceEEEEEeCCccCCc-ccHHHHHHhchHHHHHHHHH
Confidence 233456778999999998764442 21 244444321 124699999999998754 1111 01245566667
Q ss_pred hcccCeEEEecCCCC-----CCchhHHHHHHHHHh
Q 008219 151 FREIETCIECSALKQ-----IQVPEVFYYAQKAVL 180 (573)
Q Consensus 151 ~~~~~~~~~~Sa~~~-----~gi~~l~~~i~~~~~ 180 (573)
++. .++.+++..+ .++.+++..+...+.
T Consensus 181 ~~~--~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 181 FGD--RYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp HSS--SEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC--EEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 764 5777776643 688999988877654
No 249
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.2e-18 Score=169.49 Aligned_cols=143 Identities=17% Similarity=0.121 Sum_probs=99.8
Q ss_pred CCceEEEEEEcCC---------CCChhHHHHHhhC---CCCCCCCCCCC-cccEEEEEE--------------EcCCCeE
Q 008219 425 ERNVFQCFVFGPK---------KAGKSVLLNSFLG---RPFSDNYTPTT-DERYAVNVV--------------DQPGGTK 477 (573)
Q Consensus 425 ~~~~~ki~vvG~~---------~vGKSsLi~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~~ 477 (573)
....+||+|+|++ |||||||+++|++ ..+...+.++. +..+....+ ..++...
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4556999999999 9999999999999 55555554543 222221111 1334556
Q ss_pred EEEEEe-----------------------cCChhHHHhhhccccccc---------------------cccEEEEEEeCC
Q 008219 478 KTVVLR-----------------------EIPEEAVAKLLSNKDSLA---------------------ACDIAVFVHDSS 513 (573)
Q Consensus 478 ~~~i~d-----------------------t~G~~~~~~~~~~~~~~~---------------------~~d~vilv~D~~ 513 (573)
.+.||| ++|+++|..+ +..+++ +||++++|||++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASA--EKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECT--TCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhh--hhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 788999 6777777666 666666 799999999999
Q ss_pred Ch--hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHc-CCccC
Q 008219 514 DE--SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFL-VMVLY 572 (573)
Q Consensus 514 ~~--~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~ 572 (573)
++ .||+.+..|+..+....... ++|++||+||+|+...+.. +++++++++. ++++|
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~--~~piilV~NK~Dl~~~~~v-~~~~~~~~~~~~~~~~ 232 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKT--KKPIVVVLTKCDEGVERYI-RDAHTFALSKKNLQVV 232 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHT--TCCEEEEEECGGGBCHHHH-HHHHHHHHTSSSCCEE
T ss_pred CCchhhHHHHHHHHHHHHHHhccC--CCCEEEEEEcccccccHHH-HHHHHHHHhcCCCeEE
Confidence 98 99999999998887641111 7999999999999765432 5777888763 66654
No 250
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.5e-17 Score=153.11 Aligned_cols=116 Identities=21% Similarity=0.326 Sum_probs=85.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhcc----CCE
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRR----ADA 89 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~----ad~ 89 (573)
...++|+|+|++|||||||+++|++..+....++...++. .....+.+.+|||||+..+...+..++.. +|+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 121 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA----ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG 121 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee----eeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCE
Confidence 5678999999999999999999999876543222111111 12256789999999999887777766665 899
Q ss_pred EEEEEeCC-CcccHHHHHHHHHHHHHh-----cCCCCcEEEEEeCCCCCCC
Q 008219 90 VVLTYACD-RPETLDELSTFWLPELRR-----LEVKVPVIVVGCKLDLRDE 134 (573)
Q Consensus 90 il~v~D~~-~~~s~~~~~~~~~~~l~~-----~~~~~piilv~NK~D~~~~ 134 (573)
+++|||++ +..++..+.. |+..+.. ...++|+++|+||+|+...
T Consensus 122 ~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 122 LIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp EEEEEETTCCHHHHHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred EEEEEECCCCchhHHHHHH-HHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 99999999 8888888875 5544432 2358999999999999876
No 251
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.71 E-value=4.4e-17 Score=165.94 Aligned_cols=164 Identities=18% Similarity=0.192 Sum_probs=103.9
Q ss_pred CcceE-EEEEcCCCCCHHHHHHHHhcCCCC-CCCCCC-CCCeeecccccCCceeEEEEeCCCCccc--hh------hhHh
Q 008219 14 KTGVR-IVVCGEKGTGKSSLIVTAAADTFP-ANVPPV-LPPTRLPEDFYPDRVPITIIDTPSSVED--RG------KLGE 82 (573)
Q Consensus 14 ~~~~k-I~ivG~~~vGKSSLin~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~------~~~~ 82 (573)
+..++ |+|+|++|||||||+|+|++..+. .+.+++ .+.+.. .+...+..+.+|||+|+... .. ....
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~--~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~ 253 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRY--AIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS 253 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEE--EEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEE--EEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH
Confidence 44566 999999999999999999987642 223321 112222 23334578999999996321 11 1223
Q ss_pred hhccCCEEEEEEeCCCcc--cHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHh-cccCeEE
Q 008219 83 ELRRADAVVLTYACDRPE--TLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF-REIETCI 158 (573)
Q Consensus 83 ~~~~ad~il~v~D~~~~~--s~~~~~~~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 158 (573)
.+..+|++++|+|++++. ....+. .|...++... .++|+++|+||+|+.... ..........+...+ ....+++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~~ 331 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDVI 331 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEEE
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcEE
Confidence 578999999999998876 444443 3666666543 478999999999987641 111011122233444 2112689
Q ss_pred EecCCCCCCchhHHHHHHHHHhC
Q 008219 159 ECSALKQIQVPEVFYYAQKAVLH 181 (573)
Q Consensus 159 ~~Sa~~~~gi~~l~~~i~~~~~~ 181 (573)
++||++|.|++++++.+.+.+..
T Consensus 332 ~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 332 PISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHHHhcc
Confidence 99999999999999999886643
No 252
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=1.5e-17 Score=165.69 Aligned_cols=133 Identities=15% Similarity=0.130 Sum_probs=100.8
Q ss_pred HHHHHHhcCCCC-CCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcc-cHHHHHHH
Q 008219 31 SLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE-TLDELSTF 108 (573)
Q Consensus 31 SLin~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~-s~~~~~~~ 108 (573)
+|+.+++.+.|. ..+.++.+.... ..+..++ .+.|||| ++++..+...+++++|++|+|||++++. ++..+. .
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~-~ 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID-K 106 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH-H
Confidence 688889888887 666666664332 2232333 7999999 8899999999999999999999999987 677776 4
Q ss_pred HHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHH
Q 008219 109 WLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYY 174 (573)
Q Consensus 109 ~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (573)
|+..++.. ++|++||+||+|+... +.+ +....+...+....++++|||++|.|++++|..
T Consensus 107 ~l~~~~~~--~~piilv~NK~DL~~~-~~v---~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~ 166 (301)
T 1u0l_A 107 FLVLAEKN--ELETVMVINKMDLYDE-DDL---RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEY 166 (301)
T ss_dssp HHHHHHHT--TCEEEEEECCGGGCCH-HHH---HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHC--CCCEEEEEeHHHcCCc-hhH---HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHH
Confidence 98888764 8999999999999765 221 223344444442137999999999999998864
No 253
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.71 E-value=8.3e-17 Score=168.57 Aligned_cols=161 Identities=19% Similarity=0.120 Sum_probs=105.2
Q ss_pred CCCCcceEEEEEcCCCCCHHHHHHHHhcCCCC--CCC------------------------CC---CCCCee--eccccc
Q 008219 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFP--ANV------------------------PP---VLPPTR--LPEDFY 59 (573)
Q Consensus 11 ~~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~--~~~------------------------~~---~~~~~~--~~~~~~ 59 (573)
...+..++|+++|++|+|||||+++|+...-. ... .. ..+.|. ....+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 34567899999999999999999999654311 100 00 001111 222344
Q ss_pred CCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCccc---HH--HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 008219 60 PDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPET---LD--ELSTFWLPELRRLEVKVP-VIVVGCKLDLRD 133 (573)
Q Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s---~~--~~~~~~~~~l~~~~~~~p-iilv~NK~D~~~ 133 (573)
..+..+.||||||+++|.......+..+|++|+|+|+++... ++ ......+..+... ++| +|+|+||+|+..
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~--~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA--GVKHLIVLINKMDDPT 169 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc--CCCeEEEEeecCCCcc
Confidence 667899999999999998888889999999999999988632 11 1111133333333 667 999999999864
Q ss_pred Cc----ccccHHHHHHHHHHHhcc----cCeEEEecCCCCCCchhHHH
Q 008219 134 EN----QQVSLEQVMMPIMQQFRE----IETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 134 ~~----~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~ 173 (573)
.. +.....+.+..+...++. ..+++++||++|.|+.++.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 21 011112223333444442 13799999999999999665
No 254
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.71 E-value=6.9e-17 Score=161.46 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=107.7
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhH----------HHhhh
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----------VAKLL 494 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~----------~~~~~ 494 (573)
+.+.-.|+++|.+|||||||+|+|++.++...+..+.+++.....+...+....+.+|||+|... +...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~- 85 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI- 85 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH-
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH-
Confidence 44567899999999999999999999998877767777776665554442267899999999732 3333
Q ss_pred ccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCc-ccccchhhHHHHHHHcC
Q 008219 495 SNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD-SFAMAIQDSTRVFTFLV 568 (573)
Q Consensus 495 ~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 568 (573)
...+++.+|++++|+|++++.++.....|+..+... ++|+++|+||+|+. ..........++++.++
T Consensus 86 -~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~------~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~ 153 (308)
T 3iev_A 86 -AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL------NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP 153 (308)
T ss_dssp -HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG------CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT
T ss_pred -HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc------CCCEEEEEECccCCCCHHHHHHHHHHHHHhcc
Confidence 566789999999999999998888887777777653 79999999999998 44455667777877765
No 255
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.71 E-value=2.9e-17 Score=175.04 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=86.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------------------CCCCCCCeeecccccCCceeEEEEeCC
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPAN-----------------------VPPVLPPTRLPEDFYPDRVPITIIDTP 71 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~i~Dt~ 71 (573)
+..+|+|+|++|||||||+|+|+....... .+++. .......+.+.++.++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiT-i~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGIS-VTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCS-SSSSEEEEEETTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCee-EEEeEEEEEeCCEEEEEEECC
Confidence 457899999999999999999973211100 01110 111223445668899999999
Q ss_pred CCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 008219 72 SSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (573)
Q Consensus 72 G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~ 134 (573)
|+.++......+++.+|++|+|+|+++..+..... ++..+... ++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~--~~~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK--LMEVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH--HHHHHHTT--TCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEeCCCCccc
Confidence 99999999999999999999999999987776655 45555554 7999999999999754
No 256
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.69 E-value=2.8e-17 Score=152.01 Aligned_cols=134 Identities=16% Similarity=0.145 Sum_probs=100.7
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHH------hhhccccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA------KLLSNKDS 499 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~------~~~~~~~~ 499 (573)
.+.+||+++|++|||||||+++|++..+.....++.+.......+... ...+.+|||+|.+.+. .+ ...+
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~--~~~~ 80 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEII--ARDY 80 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHH--HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHH--HHHH
Confidence 346899999999999999999999976554444555555555555554 3778899999987653 23 3444
Q ss_pred cc--cccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 500 LA--ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 500 ~~--~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
++ .+|++++|+|+++ ++....|+..+... +.|+++|+||+|+...+....+++++++.++++++
T Consensus 81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 146 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA---LERNLYLTLQLMEM------GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVV 146 (188)
T ss_dssp HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHTT------TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEE
T ss_pred HhccCCCEEEEEecchh---HHHHHHHHHHHHhc------CCCEEEEEEhhhccccccchHHHHHHHHHhCCCeE
Confidence 54 5999999999864 66667787777653 79999999999997655444678889998888765
No 257
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.69 E-value=2.1e-16 Score=169.75 Aligned_cols=162 Identities=17% Similarity=0.196 Sum_probs=113.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCC--CCCC-----C---------CCC-CCCeeecccc---cCCceeEEEEeCCCC
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADT--FPAN-----V---------PPV-LPPTRLPEDF---YPDRVPITIIDTPSS 73 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~--~~~~-----~---------~~~-~~~~~~~~~~---~~~~~~~~i~Dt~G~ 73 (573)
.+..+|+|+|+.++|||||+++|+... +... . .++ .........+ ++..+.++||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 345689999999999999999998632 1110 0 010 0000011222 233588999999999
Q ss_pred ccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc
Q 008219 74 VEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE 153 (573)
Q Consensus 74 ~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 153 (573)
.++......+++.+|++|+|+|+++..+.+.... |...+. . ++|+++|+||+|+.... .++....+...++.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~~-~--~ipiIvviNKiDl~~a~----~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAVE-Q--DLVIIPVINKIDLPSAD----VDRVKKQIEEVLGL 155 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHHH-T--TCEEEEEEECTTSTTCC----HHHHHHHHHHTSCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHHH-C--CCCEEEEEeccCccccC----HHHHHHHHHHhhCC
Confidence 9999888899999999999999999887777663 655443 2 79999999999998651 23334445555542
Q ss_pred c-CeEEEecCCCCCCchhHHHHHHHHHhCCC
Q 008219 154 I-ETCIECSALKQIQVPEVFYYAQKAVLHPT 183 (573)
Q Consensus 154 ~-~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 183 (573)
. .+++++||++|.|++++++.+.+.+..|.
T Consensus 156 ~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 156 DPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp CGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred CcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 1 25899999999999999999998876553
No 258
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.69 E-value=5.5e-17 Score=163.65 Aligned_cols=120 Identities=21% Similarity=0.252 Sum_probs=92.1
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccccc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 504 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d 504 (573)
.+..+||+|+|.+|||||||+++|.++.+.... +|.+ .....+.. ....+.+|||+|++.+..+ +..+++.+|
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~--~~~~~~~~--~~~~l~i~Dt~G~~~~~~~--~~~~~~~ad 234 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNISFTVWDVGGQDKIRPL--WRHYFQNTQ 234 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETT--EEEEEEEE--TTEEEEEEECC-----CCS--HHHHHTTEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccc--eEEEEEec--CcEEEEEEECCCCHhHHHH--HHHHhccCC
Confidence 345689999999999999999999998865433 3333 33333433 4578899999999999888 788899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
++|+|||++++.+|..+..|+..+....... ++|++||+||+|+...
T Consensus 235 ~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 235 GLIFVVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNA 281 (329)
T ss_dssp EEEEEEETTCSSSHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTC
T ss_pred EEEEEEECCchHHHHHHHHHHHHHHhhhccC--CCeEEEEEECccCCcc
Confidence 9999999999999999999888876654322 7999999999999764
No 259
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.69 E-value=9.8e-17 Score=170.46 Aligned_cols=156 Identities=19% Similarity=0.154 Sum_probs=101.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCC--CC------------------------------CCCCCCCCeeecccccCC
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTF--PA------------------------------NVPPVLPPTRLPEDFYPD 61 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~--~~------------------------------~~~~~~~~~~~~~~~~~~ 61 (573)
+..+||+++|++|+|||||+++|++... .. ..+++.- ......+...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi-~~~~~~~~~~ 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTV-SICTSHFSTH 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSC-CCCEEEEECS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcce-EeeeEEEecC
Confidence 4569999999999999999999986521 00 0111100 0022334566
Q ss_pred ceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHH-----HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 008219 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDE-----LSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ 136 (573)
Q Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~-----~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~ 136 (573)
++.+.||||||++++......+++.+|++|+|+|+++..++.. .....+..+... ...|+|+|+||+|+... +
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~-~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDW-S 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTT-C
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccc-h
Confidence 7899999999999999989999999999999999998644321 221233333333 13579999999999863 2
Q ss_pred cccHHHH---HHHHHHHhcc---cCeEEEecCCCCCCchhHH
Q 008219 137 QVSLEQV---MMPIMQQFRE---IETCIECSALKQIQVPEVF 172 (573)
Q Consensus 137 ~~~~~~~---~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~ 172 (573)
....++. +..+...++. ..+++++||++|.|+.++.
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~ 229 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccC
Confidence 2222222 2223333332 2389999999999999754
No 260
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.69 E-value=9e-18 Score=176.55 Aligned_cols=158 Identities=17% Similarity=0.157 Sum_probs=106.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEE
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANV-PPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v 93 (573)
+..+|+++|++++|||||+++|.+..+.... +++... .....+...+..+.||||||++.|...+...+..+|++++|
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~-i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQH-IGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCC-SSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEe-EEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 5678999999999999999999876543322 221111 11123334567899999999999998888889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-cccHHH-HHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 94 YACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-QVSLEQ-VMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 94 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
+|+++....+... .+..++.. ++|+++|+||+|+..... .+.... ....+...++...+++++||++|.|++++
T Consensus 82 Vda~~g~~~qT~e--~l~~~~~~--~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL 157 (501)
T 1zo1_I 82 VAADDGVMPQTIE--AIQHAKAA--QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL 157 (501)
T ss_dssp EETTTBSCTTTHH--HHHHHHHT--TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred eecccCccHHHHH--HHHHHHhc--CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence 9998853322222 23334443 789999999999975311 110000 00001112222238999999999999999
Q ss_pred HHHHHH
Q 008219 172 FYYAQK 177 (573)
Q Consensus 172 ~~~i~~ 177 (573)
++.+..
T Consensus 158 le~I~~ 163 (501)
T 1zo1_I 158 LDAILL 163 (501)
T ss_dssp HHHTTT
T ss_pred hhhhhh
Confidence 998865
No 261
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.69 E-value=1.4e-16 Score=158.88 Aligned_cols=157 Identities=16% Similarity=0.114 Sum_probs=102.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC---CC-----------------------Ceee--c--c-----cc
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPV---LP-----------------------PTRL--P--E-----DF 58 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~---~~-----------------------~~~~--~--~-----~~ 58 (573)
....+|+|+|++|||||||+|+|++..+.+...+. .+ ++.. . . .+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999998864322110 00 1110 0 0 00
Q ss_pred -----------------cCCceeEEEEeCCCCcc-------------chhhhHhhhccCCEEE-EEEeCCCcccHHHHHH
Q 008219 59 -----------------YPDRVPITIIDTPSSVE-------------DRGKLGEELRRADAVV-LTYACDRPETLDELST 107 (573)
Q Consensus 59 -----------------~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~il-~v~D~~~~~s~~~~~~ 107 (573)
......+.||||||+.. +......+++.++.++ +|+|+++..+.....
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~- 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH-
Confidence 01136899999999752 2344557888888776 799988765544432
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc----cCeEEEecCCCCCCchhHHHHHHHH
Q 008219 108 FWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE----IETCIECSALKQIQVPEVFYYAQKA 178 (573)
Q Consensus 108 ~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~~i~~~ 178 (573)
.|+..+... +.|+++|+||+|+.... .... + .+...+.. ..+++++||++|.|++++++.+.+.
T Consensus 183 ~~~~~~~~~--~~~~i~V~NK~Dl~~~~-~~~~-~---~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 183 KIAKEVDPQ--GQRTIGVITKLDLMDEG-TDAR-D---VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHCTT--CSSEEEEEECGGGSCTT-CCCH-H---HHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHhCCC--CCeEEEEEEccccCCCC-chHH-H---HHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 266666543 78999999999997652 1111 1 11111111 1268899999999999999998774
No 262
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.69 E-value=2.6e-16 Score=168.42 Aligned_cols=119 Identities=21% Similarity=0.230 Sum_probs=98.6
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
...+||+|+|.+|||||||+++|+++.+... .+|.+ .....+... ...+.+|||+|++.+..+ +..+++++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~-~~T~~--~~~~~~~~~--~~~~~l~Dt~G~~~~~~~--~~~~~~~ad~ 392 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQDKIRPL--WRHYYTGTQG 392 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSS--EEEEEEESS--SCEEEEEEECCCGGGSGG--GGGGGTTCCE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCc-CCccc--eeEEEEEeC--CEEEEEEECCCcHHHHHH--HHHHhccCCE
Confidence 4568999999999999999999999886543 34443 444445543 468899999999999988 8899999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 506 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 506 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
+|+|||++++.+|..+..|+..+....... ++|+|||+||+|+...
T Consensus 393 ~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 393 LIFVVDCADRDRIDEARQELHRIINDREMR--DAIILIFANKQDLPDA 438 (497)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSGGGT--TCEEEEEEECCSSSSC
T ss_pred EEEEEECcchhHHHHHHHHHHHHhhhhhcC--CCcEEEEEECCCCCcC
Confidence 999999999999999999998887653322 8999999999999753
No 263
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.69 E-value=2.2e-16 Score=170.01 Aligned_cols=161 Identities=18% Similarity=0.192 Sum_probs=111.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCC--CCC-----CCCCC------CCCee----ecccc---cCCceeEEEEeCCCCc
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADT--FPA-----NVPPV------LPPTR----LPEDF---YPDRVPITIIDTPSSV 74 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~--~~~-----~~~~~------~~~~~----~~~~~---~~~~~~~~i~Dt~G~~ 74 (573)
+-.+|+|+|+.++|||||+++|+... +.. ..... .+.|. ....+ ++..+.++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 34689999999999999999998632 111 00000 00111 11222 2345889999999999
Q ss_pred cchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc
Q 008219 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI 154 (573)
Q Consensus 75 ~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 154 (573)
++......+++.+|++|+|+|+++..+.+.... |...+.. ++|+++|+||+|+.... .++....+...++..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~~---~ipiIvViNKiDl~~a~----~~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAMEM---DLEVVPVLNKIDLPAAD----PERVAEEIEDIVGID 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHHT---TCEEEEEEECTTSTTCC----HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHHC---CCCEEEeeeccCccccc----HHHHHHHHHHHhCCC
Confidence 999999999999999999999999877777663 6555433 78999999999998751 333445555555421
Q ss_pred -CeEEEecCCCCCCchhHHHHHHHHHhCCC
Q 008219 155 -ETCIECSALKQIQVPEVFYYAQKAVLHPT 183 (573)
Q Consensus 155 -~~~~~~Sa~~~~gi~~l~~~i~~~~~~~~ 183 (573)
.+++++||++|.|++++++.+.+.+..|.
T Consensus 155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 155 ATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp CTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred cceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 25899999999999999999998876553
No 264
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.68 E-value=3.1e-16 Score=163.14 Aligned_cols=168 Identities=18% Similarity=0.161 Sum_probs=100.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCC---CCCC-CCC-CCCCeeeccc---------c------c--CC----ceeEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADT---FPAN-VPP-VLPPTRLPED---------F------Y--PD----RVPIT 66 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~---~~~~-~~~-~~~~~~~~~~---------~------~--~~----~~~~~ 66 (573)
.+..++|+++|+.++|||||+++|++.. +... .++ +......... + . .. ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3467999999999999999999998543 2222 122 1111100000 0 0 11 26899
Q ss_pred EEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHH
Q 008219 67 IIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMP 146 (573)
Q Consensus 67 i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~ 146 (573)
||||||++.+.......+..+|++|+|+|+++........+ .+..++... ..|+++|+||+|+..........+.+..
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~l~-~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKE-HLMALEILG-IDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHH-HHHHHHHTT-CCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHH-HHHHHHHcC-CCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 99999998887777777888999999999996431111111 222333332 3589999999999875221122222233
Q ss_pred HHHHh-cccCeEEEecCCCCCCchhHHHHHHHHHhCC
Q 008219 147 IMQQF-REIETCIECSALKQIQVPEVFYYAQKAVLHP 182 (573)
Q Consensus 147 ~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 182 (573)
+...+ ....+++++||++|.|+++|++.+.+.+..+
T Consensus 163 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 163 FVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 33322 1123899999999999999999998865543
No 265
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.68 E-value=9.5e-17 Score=166.93 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=103.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcC--------CCCCC----------CCCCCCCeeecccccCCceeEEEEeCCCCc
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAAD--------TFPAN----------VPPVLPPTRLPEDFYPDRVPITIIDTPSSV 74 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~--------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 74 (573)
.+..++|+++|++|+|||||+++|++. .+... ..++. .......+...+..+.||||||++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiT-i~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGIT-INTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCC-CSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCC-EEeeeeEeccCCeEEEEEECCChH
Confidence 456799999999999999999999873 11110 01110 000223345667889999999999
Q ss_pred cchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccc-cHHHHHHHHHHHhc
Q 008219 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDENQQV-SLEQVMMPIMQQFR 152 (573)
Q Consensus 75 ~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~D~~~~~~~~-~~~~~~~~~~~~~~ 152 (573)
++......++..+|++|+|+|+++....+.. .|+..++.. ++| +++|+||+|+....... ...+....+...++
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~--~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 9988888899999999999999887644332 366666665 788 89999999997531101 11223344445544
Q ss_pred c---cCeEEEecCCCCCC
Q 008219 153 E---IETCIECSALKQIQ 167 (573)
Q Consensus 153 ~---~~~~~~~Sa~~~~g 167 (573)
. ..+++++||++|.|
T Consensus 163 ~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALE 180 (405)
T ss_dssp SCTTTSCEEECCHHHHHH
T ss_pred ccccCCCEEEccHHHhhh
Confidence 2 23899999999987
No 266
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.68 E-value=2.6e-17 Score=156.20 Aligned_cols=133 Identities=19% Similarity=0.222 Sum_probs=98.0
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCC---CCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDN---YTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAA 502 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~ 502 (573)
...++|+++|++|||||||+++|++..+... +.++.+..+ ....+.+|||+|++.+... ...+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~--~~~~~~~ 78 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYK--LSDYLKT 78 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHH--HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHH--HHHHHHh
Confidence 4567999999999999999999999876432 222222111 3457889999999888776 5666666
Q ss_pred ----ccEEEEEEeCC-ChhhHHHHHHHHHHHHhcCC---CCCCCCcEEEEEeCCCCccccc-c------hhhHHHHHHHc
Q 008219 503 ----CDIAVFVHDSS-DESSWKRATELLVEVASYGE---DTGFEVPCLIVAAKDDLDSFAM-A------IQDSTRVFTFL 567 (573)
Q Consensus 503 ----~d~vilv~D~~-~~~s~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~Dl~~~~~-~------~~~~~~~~~~~ 567 (573)
+|++++|||++ ++.+|.....|+..+..... .. ++|+++|+||+|+...+. . ..++.+++...
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 156 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN--GIDILIACNKSELFTARPPSKIKDALESEIQKVIERR 156 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTT--CCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccC--CCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999 88899999999888765421 11 899999999999976542 1 34556666655
Q ss_pred CCcc
Q 008219 568 VMVL 571 (573)
Q Consensus 568 ~~~~ 571 (573)
++++
T Consensus 157 ~~~~ 160 (218)
T 1nrj_B 157 KKSL 160 (218)
T ss_dssp HHHH
T ss_pred hccc
Confidence 4443
No 267
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.67 E-value=1.3e-16 Score=156.89 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=88.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCC-CCCC-------CCCCCCeeeccccc--CCceeEEEEeCCCCccc-------h
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTF-PANV-------PPVLPPTRLPEDFY--PDRVPITIIDTPSSVED-------R 77 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~-~~~~-------~~~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~~-------~ 77 (573)
..++|+|+|.+|||||||+|+|++... ...+ .++.+.......+. +..+.+.||||||+... .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 468999999999999999999887653 3333 22222222222333 33468999999998432 1
Q ss_pred hhh-------Hhhhcc-------------CCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 008219 78 GKL-------GEELRR-------------ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ 137 (573)
Q Consensus 78 ~~~-------~~~~~~-------------ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~ 137 (573)
... ..++.. +|+++++++.+.. ++......+++.+.. ++|+|+|+||+|+....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~-- 160 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPE-- 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHH--
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHH--
Confidence 111 233333 7899999986552 333343446777665 79999999999987541
Q ss_pred ccHHHHHHHHHHHhcc-cCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 138 VSLEQVMMPIMQQFRE-IETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 138 ~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
........+...+.. -.+++++||+++.|+.++++.+.+.+
T Consensus 161 -e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 -ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp -HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred -HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 111111222232211 12789999999999999999988754
No 268
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.67 E-value=7.1e-17 Score=157.02 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=98.4
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhh----cccccc-
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL----SNKDSL- 500 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~----~~~~~~- 500 (573)
.+.++|+++|.+|||||||+|+|++..+.....+..+.......+.. +...+.+|||+|...+.... -...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY--KGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE--CCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 34689999999999999999999998765444444444444334443 34788999999976554310 023444
Q ss_pred -ccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 501 -AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 501 -~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
..+|++++|+|+++.++. ..|...+... ++|+++|+||+|+...+....+..++++.++++++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~------~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi 144 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILEM------EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVV 144 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHTT------TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEE
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHhc------CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEE
Confidence 589999999999987554 3355555543 79999999999997655444568889999998876
No 269
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.67 E-value=2.9e-16 Score=169.31 Aligned_cols=159 Identities=19% Similarity=0.237 Sum_probs=106.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CC---CCCeeeccc--------------ccCCceeEEEEeCCCCccc
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVP-PV---LPPTRLPED--------------FYPDRVPITIIDTPSSVED 76 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~-~~---~~~~~~~~~--------------~~~~~~~~~i~Dt~G~~~~ 76 (573)
+..+|+|+|++|+|||||+++|++..+....+ ++ .+.+..... +......+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 46799999999999999999999765543322 11 111111111 1112235999999999999
Q ss_pred hhhhHhhhccCCEEEEEEeCCC---cccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--------------cc
Q 008219 77 RGKLGEELRRADAVVLTYACDR---PETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ--------------VS 139 (573)
Q Consensus 77 ~~~~~~~~~~ad~il~v~D~~~---~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~--------------~~ 139 (573)
......+++.+|++|+|+|+++ +++++.+ ..++.. ++|+++|+||+|+...... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-----~~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-----HHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-----HHHHHc--CCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9888888999999999999999 4444433 234443 7999999999998642110 00
Q ss_pred ----HHHHHHHHHHHh----------------cccCeEEEecCCCCCCchhHHHHHHHHHh
Q 008219 140 ----LEQVMMPIMQQF----------------REIETCIECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 140 ----~~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
..+....+...+ +...+++++||++|.|+++|++.+...+.
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 011111111111 11238999999999999999999987653
No 270
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.67 E-value=3.7e-16 Score=163.81 Aligned_cols=157 Identities=18% Similarity=0.150 Sum_probs=104.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------CCCCCCC-------------------ee--eccccc
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADT--FPAN----------VPPVLPP-------------------TR--LPEDFY 59 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~--~~~~----------~~~~~~~-------------------~~--~~~~~~ 59 (573)
.+..++|+++|++|+|||||+++|++.. +... .+++.+. |. ....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3456999999999999999999998754 1111 1121100 00 011233
Q ss_pred CCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCccc-
Q 008219 60 PDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKV-PVIVVGCKLDLRDENQQ- 137 (573)
Q Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~-piilv~NK~D~~~~~~~- 137 (573)
..+..+.||||||++++......++..+|++|+|+|+++....+.. .++..+... +. |+++|+||+|+......
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEcCcCCcccHHH
Confidence 4567899999999999988888889999999999999986543332 255555554 44 69999999999863111
Q ss_pred -ccHHHHHHHHHHHhc---ccCeEEEecCCCCCCchhHHH
Q 008219 138 -VSLEQVMMPIMQQFR---EIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 138 -~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
....+....+...++ ...+++++||++|.|+.+++.
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 112233344444554 113799999999999998643
No 271
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.67 E-value=7.9e-17 Score=144.71 Aligned_cols=126 Identities=17% Similarity=0.181 Sum_probs=83.7
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCC-CCCCcccEEEEEEEcCCCeEEEEEEecCChhH-------HHhhhcccccc
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPEEA-------VAKLLSNKDSL 500 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~-------~~~~~~~~~~~ 500 (573)
.||+++|++|||||||+++|.+..+.... .++.+.......+... ...+.+|||+|.+. +... ...++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~--~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD--RGRFLLVDTGGLWSGDKWEKKIQEK--VDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEET--TEEEEEEECGGGCSSSSCCHHHHHH--HHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeC--CceEEEEECCCCCCccchHHHHHHH--HHHHH
Confidence 68999999999999999999988754322 2333333444445554 34788999999875 3333 55678
Q ss_pred ccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCC
Q 008219 501 AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 569 (573)
Q Consensus 501 ~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 569 (573)
+.+|++++|+|++++.+. ...++..+.... ++|+++|+||+|+...+ +++++++ ++++
T Consensus 78 ~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~---~~~~~~~-~~~~ 135 (161)
T 2dyk_A 78 EDAEVVLFAVDGRAELTQ--ADYEVAEYLRRK-----GKPVILVATKVDDPKHE---LYLGPLY-GLGF 135 (161)
T ss_dssp TTCSEEEEEEESSSCCCH--HHHHHHHHHHHH-----TCCEEEEEECCCSGGGG---GGCGGGG-GGSS
T ss_pred HhCCEEEEEEECCCcccH--hHHHHHHHHHhc-----CCCEEEEEECcccccch---HhHHHHH-hCCC
Confidence 999999999999987433 333443333322 79999999999997642 3344455 4565
No 272
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.67 E-value=1.2e-16 Score=146.12 Aligned_cols=114 Identities=17% Similarity=0.189 Sum_probs=89.1
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 505 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~ 505 (573)
++.++|+|+|.+|||||||+++|+++.+...+.++.+.......+..+ ...+.+|||+|++.+..+ +..++..+|+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~--~~~~~~~~d~ 81 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN--DKKITFLDTPGHEAFTTM--RARGAQVTDI 81 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET--TEEEEESCCCSSSSSSCS--CCSSCCCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC--CceEEEEECCCCHHHHHH--HHHHHhhCCE
Confidence 456799999999999999999999998877666666655555555555 356789999999988887 7788899999
Q ss_pred EEEEEeCCCh---hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 506 AVFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 506 vilv~D~~~~---~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
+++|||++++ .+++.+ ..+... ++|+++|+||+|+...
T Consensus 82 ~i~v~d~~~~~~~~~~~~l----~~~~~~------~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 82 VILVVAADDGVMPQTVEAI----NHAKAA------NVPIIVAINKMDKPEA 122 (178)
T ss_dssp EEEEEETTCCCCHHHHHHH----HHHGGG------SCCEEEEEETTTSSCS
T ss_pred EEEEEECCCCCcHHHHHHH----HHHHhC------CCCEEEEEECccCCcC
Confidence 9999999984 333332 222222 7999999999999763
No 273
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.67 E-value=2.6e-16 Score=148.23 Aligned_cols=163 Identities=18% Similarity=0.135 Sum_probs=99.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccc----------hhhhH
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED----------RGKLG 81 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 81 (573)
......+|+|+|++|||||||+|+|++..+...+.++.+.+.....+...+ .+.+|||||+... .....
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 445678999999999999999999998775433333333443211121112 6889999997531 22222
Q ss_pred hhh---ccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEE
Q 008219 82 EEL---RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCI 158 (573)
Q Consensus 82 ~~~---~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (573)
.++ ..++++++|+|++++.+..... +...+... ++|+++|+||+|+...............+....+....++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~~--~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAVDS--NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE 176 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHH--HHHHHHHc--CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceE
Confidence 333 5789999999999876654321 33334433 7899999999998764110110112223333333233789
Q ss_pred EecCCCCCCchhHHHHHHHHH
Q 008219 159 ECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 159 ~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
++||+++.|++++++.+.+.+
T Consensus 177 ~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 177 TFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EEeecCCCCHHHHHHHHHHHH
Confidence 999999999999999887754
No 274
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.67 E-value=4.3e-17 Score=151.46 Aligned_cols=129 Identities=18% Similarity=0.183 Sum_probs=89.0
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCC---CCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDN---YTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAA 502 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~ 502 (573)
...++|+|+|.+|||||||+++|.+..+... ..++.+. .. ....+.+|||+|.+.+... +..+++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-------~~--~~~~~~l~Dt~G~~~~~~~--~~~~~~~ 114 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DY--DGSGVTLVDFPGHVKLRYK--LSDYLKT 114 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CC--CCTTCSEEEETTCCBSSCC--HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-------ee--cCCeEEEEECCCCchHHHH--HHHHHHh
Confidence 3457999999999999999999999875431 1111111 11 3346779999998766554 4444444
Q ss_pred ----ccEEEEEEeCC-ChhhHHHHHHHHHHHHhcCCC-CCCCCcEEEEEeCCCCcccccchhhHHHHHH
Q 008219 503 ----CDIAVFVHDSS-DESSWKRATELLVEVASYGED-TGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT 565 (573)
Q Consensus 503 ----~d~vilv~D~~-~~~s~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 565 (573)
+|++++|||++ +..+|.....|+..+...... ...++|+++|+||+|+...+...+..+.+.+
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~ 183 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHH
Confidence 89999999999 899999999988777653210 0017999999999999875544444444443
No 275
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.66 E-value=5.9e-17 Score=149.92 Aligned_cols=131 Identities=10% Similarity=0.058 Sum_probs=94.0
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCC-----------hhHHHhhhccc
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP-----------EEAVAKLLSNK 497 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G-----------~~~~~~~~~~~ 497 (573)
+||+|+|++|||||||+++|++..+...+.++.+... ..+... .+.+|||+| ++.+..+ ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~--~~ 73 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDE--IV 73 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHH--HH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHH--HH
Confidence 5899999999999999999999987765555444322 222222 578999999 6777776 66
Q ss_pred ccccc-ccEEEEEEeCCChhhHHHH-HHHHHH--------HHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHc
Q 008219 498 DSLAA-CDIAVFVHDSSDESSWKRA-TELLVE--------VASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFL 567 (573)
Q Consensus 498 ~~~~~-~d~vilv~D~~~~~s~~~~-~~~~~~--------~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 567 (573)
.+++. ++++++||++.+..+|..+ ..|... +....... ++|+++|+||+|+...+ .++++++++++
T Consensus 74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~--~~~~~~~~~~~ 149 (190)
T 2cxx_A 74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNV--QEVINFLAEKF 149 (190)
T ss_dssp HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCH--HHHHHHHHHHH
T ss_pred HHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhc--CCceEEEeehHhccCcH--HHHHHHHHHHh
Confidence 67776 7777777777777888776 455432 11111111 79999999999998654 56788899998
Q ss_pred CCcc
Q 008219 568 VMVL 571 (573)
Q Consensus 568 ~~~~ 571 (573)
++++
T Consensus 150 ~~~~ 153 (190)
T 2cxx_A 150 EVPL 153 (190)
T ss_dssp TCCG
T ss_pred hhhh
Confidence 8764
No 276
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.66 E-value=7e-16 Score=160.64 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=105.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCC---CCCC-CCC-CCCCeeecccc---------------c--CC----ceeEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADT---FPAN-VPP-VLPPTRLPEDF---------------Y--PD----RVPIT 66 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~---~~~~-~~~-~~~~~~~~~~~---------------~--~~----~~~~~ 66 (573)
.+..++|+++|++++|||||+++|++.. +... .++ +.........+ . .. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999999543 2211 122 11111000000 0 11 26899
Q ss_pred EEeCCCCccchhhhHhhhccCCEEEEEEeCCCcc----cHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHH
Q 008219 67 IIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE----TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQ 142 (573)
Q Consensus 67 i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~----s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~ 142 (573)
||||||++++.......+..+|++|+|+|+++.. +.+.+ ..++... ..|+++|+||+|+..... ..+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~~~-~~~iivviNK~Dl~~~~~---~~~ 157 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-----MALQIIG-QKNIIIAQNKIELVDKEK---ALE 157 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-----HHHHHHT-CCCEEEEEECGGGSCHHH---HHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-----HHHHHcC-CCcEEEEEECccCCCHHH---HHH
Confidence 9999999888777777888999999999998643 33333 2333332 358999999999987511 111
Q ss_pred HHHHHHHHhc----ccCeEEEecCCCCCCchhHHHHHHHHHhCC
Q 008219 143 VMMPIMQQFR----EIETCIECSALKQIQVPEVFYYAQKAVLHP 182 (573)
Q Consensus 143 ~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 182 (573)
..+.+...+. ...+++++||++|.|+++|++.+.+.+..+
T Consensus 158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 1222222221 123899999999999999999998865544
No 277
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.66 E-value=3.3e-16 Score=149.76 Aligned_cols=138 Identities=13% Similarity=0.090 Sum_probs=92.8
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCCh------hH----HHhhhc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE------EA----VAKLLS 495 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~------~~----~~~~~~ 495 (573)
...+||+|+|.+|||||||+|+|++..+.....+..+.......+... ...+.+|||+|. +. +..+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~-- 102 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTI-- 102 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHH--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHH--
Confidence 456899999999999999999999987753222222333333333333 367899999998 33 3332
Q ss_pred cccccccccEEEEEEeCCChhhHHH--HHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc-ch---hhHHHHHHHcC-
Q 008219 496 NKDSLAACDIAVFVHDSSDESSWKR--ATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM-AI---QDSTRVFTFLV- 568 (573)
Q Consensus 496 ~~~~~~~~d~vilv~D~~~~~s~~~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~---~~~~~~~~~~~- 568 (573)
..++..+|++++|||++++.+|.. ...|+..+..... ++|+++|+||+|+...+. .. ...+++++..+
T Consensus 103 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 103 -TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS----NKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN 177 (228)
T ss_dssp -HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-----CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred -HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc----CCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence 234678899999999999988752 3356666665432 799999999999976542 22 35667777765
Q ss_pred -CccC
Q 008219 569 -MVLY 572 (573)
Q Consensus 569 -~~~~ 572 (573)
+++|
T Consensus 178 ~~~~~ 182 (228)
T 2qu8_A 178 PIKFS 182 (228)
T ss_dssp CEEEE
T ss_pred CceEE
Confidence 5544
No 278
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.66 E-value=4.3e-17 Score=158.31 Aligned_cols=131 Identities=11% Similarity=0.067 Sum_probs=97.5
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHh----------hhcccc
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK----------LLSNKD 498 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~----------~~~~~~ 498 (573)
.+|+++|.+|||||||+|+|.+........+..+.......+... ...+.+|||+|...+.. + ...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~e~i--~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG--EHLIEITDLPGVYSLVANAEGISQDEQI--AAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET--TEEEEEEECCCCSSCC------CHHHHH--HHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC--CeEEEEEeCCCcccccccccCCCHHHHH--HHH
Confidence 379999999999999999999987554445555555555556555 34888999999765432 3 445
Q ss_pred cc--ccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 499 SL--AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 499 ~~--~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
++ +++|++++|+|+++.+++..+..+ +... ++|+++|+||+|+...+........+++.++++++
T Consensus 78 ~~~~~~~d~vi~VvDas~~~~~~~l~~~---l~~~------~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi 144 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACHLERHLYLTSQ---LFEL------GKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVI 144 (256)
T ss_dssp HHHHSCCSEEEEEEEGGGHHHHHHHHHH---HTTS------CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEE
T ss_pred HHhhCCCCEEEEEeeCCCchhHHHHHHH---HHHc------CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEE
Confidence 56 889999999999987665544443 3322 79999999999998765445567778889998875
No 279
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.1e-16 Score=169.19 Aligned_cols=156 Identities=20% Similarity=0.165 Sum_probs=103.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------------C-----------------CCCCee--ecccccCCc
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVP------------P-----------------VLPPTR--LPEDFYPDR 62 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~------------~-----------------~~~~~~--~~~~~~~~~ 62 (573)
+..+||+++|++|||||||+++|++........ + ..+.|. ....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 567999999999999999999999764321110 0 001111 233345667
Q ss_pred eeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcc---cH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 008219 63 VPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE---TL--DELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ 137 (573)
Q Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~---s~--~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~ 137 (573)
+.+.||||||++.+......+++.+|++|+|+|+++.. ++ .......+..+... ...|+|+|+||+|+... +.
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-gi~~iIVVvNKiDl~~~-~~ 322 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDW-SQ 322 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-TCCEEEEEEECTTTTTT-CH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-CCCeEEEEEecccccch-hH
Confidence 89999999999999888889999999999999998742 11 11111122233333 12459999999999863 22
Q ss_pred ccHH---HHHHHHHHHhcc---cCeEEEecCCCCCCchhH
Q 008219 138 VSLE---QVMMPIMQQFRE---IETCIECSALKQIQVPEV 171 (573)
Q Consensus 138 ~~~~---~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l 171 (573)
...+ +.+..+...++. ..++++|||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2222 222333333332 238999999999999876
No 280
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.65 E-value=3.3e-16 Score=155.66 Aligned_cols=117 Identities=21% Similarity=0.242 Sum_probs=88.7
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhH--------HHhhhccccc
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA--------VAKLLSNKDS 499 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~--------~~~~~~~~~~ 499 (573)
..+|+++|.+|||||||+|+|++.++..++..+.+++..+..+... +...+.+|||+|... +... ...+
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~~~l~~~~~~~--~~~~ 83 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDALGEFMDQE--VYEA 83 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHHHHHHHHH--HHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe-CCcEEEEecCccccchhhHHHHHHHHH--HHHH
Confidence 3579999999999999999999999877665566666655544333 467889999999654 4444 5678
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHH-HHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 500 LAACDIAVFVHDSSDESSWKRATELL-VEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 500 ~~~~d~vilv~D~~~~~s~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
++.+|++++|+|++++.+. .+.|+ ..+..... ++|+++|+||+|+...
T Consensus 84 l~~ad~il~VvD~~~~~~~--~~~~i~~~l~~~~~----~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTP--EDELVARALKPLVG----KVPILLVGNKLDAAKY 132 (301)
T ss_dssp TSSCSEEEEEEETTSCCCH--HHHHHHHHHGGGTT----TSCEEEEEECGGGCSS
T ss_pred HhcCCEEEEEEECCCCCCh--HHHHHHHHHHhhcC----CCCEEEEEECcccCCc
Confidence 8999999999999987443 35565 34444321 7999999999999754
No 281
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.65 E-value=1.2e-16 Score=157.10 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=96.5
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhc--------cccc
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLS--------NKDS 499 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~--------~~~~ 499 (573)
.++|+++|.+|||||||+|+|++........+..+.......+... ...+.+|||+|...+..... ...+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECS--SCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeC--CCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 4799999999999999999999987544444555555555556654 35678899999765442100 2222
Q ss_pred --cccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 500 --LAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 500 --~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
.+.+|++++|+|+++.++......++. .. ++|+++|+||+|+...+.......++++.++++++
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~~------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i 146 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQLL---EL------GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVI 146 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHHH---HH------TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEE
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHHH---hc------CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEE
Confidence 279999999999998765544444443 33 79999999999997765445567888889998875
No 282
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.65 E-value=9.4e-17 Score=157.06 Aligned_cols=131 Identities=15% Similarity=0.061 Sum_probs=94.5
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHH------hhhccccccc
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA------KLLSNKDSLA 501 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~------~~~~~~~~~~ 501 (573)
.+||+++|++|||||||+|+|.+........+..+... ....+.. ...+.+|||+|...+. .+ ...++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v--~~~~~~ 77 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKV--ARDYLL 77 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHH--HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHH--HHHHHh
Confidence 47999999999999999999999764333333333322 2233443 4578899999987654 23 344554
Q ss_pred --cccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 502 --ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 502 --~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
.+|++++|+|+++.+++ ..|...+... ++|+++|+||+|+...+....+..++++.++++++
T Consensus 78 ~~~~d~vi~V~D~t~~e~~---~~~~~~l~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi 141 (272)
T 3b1v_A 78 SQRADSILNVVDATNLERN---LYLTTQLIET------GIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVV 141 (272)
T ss_dssp TTCCSEEEEEEEGGGHHHH---HHHHHHHHHT------CSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEE
T ss_pred cCCCCEEEEEecCCchHhH---HHHHHHHHhc------CCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEE
Confidence 69999999999886544 3455555543 89999999999997655444677889999998875
No 283
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.65 E-value=2.1e-16 Score=163.70 Aligned_cols=163 Identities=16% Similarity=0.128 Sum_probs=110.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCC-------CCCC--CCC-----CCCCee--ecccccCCceeEEEEeCCCCccchh
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADT-------FPAN--VPP-----VLPPTR--LPEDFYPDRVPITIIDTPSSVEDRG 78 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~-------~~~~--~~~-----~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~ 78 (573)
+.+||+++|++++|||||+++|++.. +... ... ..+.|. ....+...+..+.||||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 56899999999999999999998741 1100 000 001111 1123445678899999999998888
Q ss_pred hhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCccc-ccHHHHHHHHHHHhcc---
Q 008219 79 KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDENQQ-VSLEQVMMPIMQQFRE--- 153 (573)
Q Consensus 79 ~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~D~~~~~~~-~~~~~~~~~~~~~~~~--- 153 (573)
....+++.+|++|+|+|+++....+... ++..++.. ++| +++|+||+|+...... ....+....+...++.
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e--~l~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTRE--HLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 8888899999999999999865444333 34555554 788 7899999999753111 1112233445555542
Q ss_pred cCeEEEecCCCCCC----------chhHHHHHHHHHhC
Q 008219 154 IETCIECSALKQIQ----------VPEVFYYAQKAVLH 181 (573)
Q Consensus 154 ~~~~~~~Sa~~~~g----------i~~l~~~i~~~~~~ 181 (573)
..+++++||++|.| +.+|++.+.+.+..
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 23899999999765 78888888775543
No 284
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.64 E-value=6.5e-16 Score=143.63 Aligned_cols=118 Identities=15% Similarity=0.159 Sum_probs=79.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCC----------hhHHHhhhc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP----------EEAVAKLLS 495 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G----------~~~~~~~~~ 495 (573)
...++|+|+|.+|||||||+|+|++..+.....++.++.........+ . .+.+|||+| ++.+..+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~-- 95 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-D--ELHFVDVPGYGFAKVSKSEREAWGRM-- 95 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-T--TEEEEECCCBCCCSSCHHHHHHHHHH--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-C--cEEEEECCCCCccccCHHHHHHHHHH--
Confidence 456899999999999999999999987544443443333333333333 2 578999999 7777776
Q ss_pred cccccccc---cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc
Q 008219 496 NKDSLAAC---DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM 555 (573)
Q Consensus 496 ~~~~~~~~---d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 555 (573)
...+++.+ |++++|+|++++.++.... ++..+... ++|+++|+||+|+...+.
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~------~~p~i~v~nK~Dl~~~~~ 151 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKYY------GIPVIVIATKADKIPKGK 151 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHHT------TCCEEEEEECGGGSCGGG
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc------CCCEEEEEECcccCChHH
Confidence 66666666 9999999999987776543 12222221 799999999999976543
No 285
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.64 E-value=1.3e-16 Score=145.53 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=85.3
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCC-CCCCcccEEEEEEEcCCCeEEEEEEecCChhH----HHh--hhcccccc
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----VAK--LLSNKDSL 500 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~----~~~--~~~~~~~~ 500 (573)
.+||+++|++|||||||+|+|.+..+.... .++.+.......+..++ ..+.+|||+|.+. +.. +.+...++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 479999999999999999999998754333 23333344445566552 4578999999743 111 10122457
Q ss_pred ccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 501 AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 501 ~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
+.+|++++|||++++.++. ...|+..+...... ++|+++|+||+|+..
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~---~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPA---KLPITVVRNKADITG 129 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCT---TCCEEEEEECHHHHC
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhccc---CCCEEEEEECccCCc
Confidence 8999999999999998876 34676666654432 799999999999854
No 286
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.64 E-value=3.9e-16 Score=159.57 Aligned_cols=98 Identities=19% Similarity=0.155 Sum_probs=68.6
Q ss_pred CCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHH---HHHHHH
Q 008219 72 SSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQ---VMMPIM 148 (573)
Q Consensus 72 G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~---~~~~~~ 148 (573)
.++.|...+..+++.++++++|+|++++.+ .|.+.+.....++|+++|+||+|+.... ...+. ......
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~--~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRS--VKYPKLLRWMRRMA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTT--CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCc--cCHHHHHHHHHHHH
Confidence 367888888888999999999999999763 2555555544589999999999997641 11111 112223
Q ss_pred HHhccc-CeEEEecCCCCCCchhHHHHHHH
Q 008219 149 QQFREI-ETCIECSALKQIQVPEVFYYAQK 177 (573)
Q Consensus 149 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~i~~ 177 (573)
...+.. .+++.+||++|.|++++++.+.+
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~ 158 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINR 158 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHh
Confidence 333321 26899999999999999886643
No 287
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.64 E-value=7.6e-16 Score=157.26 Aligned_cols=98 Identities=22% Similarity=0.130 Sum_probs=69.9
Q ss_pred CCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHH---HHHHHHH
Q 008219 72 SSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLE---QVMMPIM 148 (573)
Q Consensus 72 G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~---~~~~~~~ 148 (573)
..+.|...+..+.+.+|++++|+|++++. ..|.+.+++...++|+++|+||+|+.... ...+ +......
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~--~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS--VKHDKVKHWMRYSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT--SCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc--cCHHHHHHHHHHHH
Confidence 34678888888999999999999998753 23777777765689999999999997641 1111 1122223
Q ss_pred HHhcc-cCeEEEecCCCCCCchhHHHHHHH
Q 008219 149 QQFRE-IETCIECSALKQIQVPEVFYYAQK 177 (573)
Q Consensus 149 ~~~~~-~~~~~~~Sa~~~~gi~~l~~~i~~ 177 (573)
...+. ..+++.+||++|.|++++++.+.+
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence 33332 126899999999999999986643
No 288
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.63 E-value=4.4e-16 Score=163.21 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=104.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcC--CCCCC------------------------------CCCCCCCeeecccccCC
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAAD--TFPAN------------------------------VPPVLPPTRLPEDFYPD 61 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~ 61 (573)
+..++|+++|++|+|||||+++|+.. .+... ..++.- ......+...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi-~~~~~~~~~~ 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTI-NLTFMRFETK 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC------------CEEECS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCcee-EeeEEEEecC
Confidence 46799999999999999999999864 22210 111100 0012234566
Q ss_pred ceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHH------HHHHHHHhcCCC-CcEEEEEeCCCCCCC
Q 008219 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELST------FWLPELRRLEVK-VPVIVVGCKLDLRDE 134 (573)
Q Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~------~~~~~l~~~~~~-~piilv~NK~D~~~~ 134 (573)
++.+.||||||++++......+++.+|++|+|+|+++ .+|+.... ..+..++.. + .|+++|+||+|+...
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSS
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCc
Confidence 7899999999999998888899999999999999998 55654321 123333333 4 469999999999763
Q ss_pred c-cc---ccHHHHHHHHHHHhcc---cCeEEEecCCCCCCchhHHH
Q 008219 135 N-QQ---VSLEQVMMPIMQQFRE---IETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 135 ~-~~---~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~ 173 (573)
. .+ ....+.+..+...++. ..+++++||++|.|+.++++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 11 1122333444444442 13799999999999986543
No 289
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.63 E-value=1.6e-15 Score=148.07 Aligned_cols=119 Identities=18% Similarity=0.144 Sum_probs=85.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhc------
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELR------ 85 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------ 85 (573)
++.++|+++|++|||||||+|+|++..+ ...++++... .....+...+..+.||||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLR-PVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCC-CEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCccee-eEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 4689999999999999999999999874 3333332111 123344556789999999999877654443332
Q ss_pred ---cCCEEEEEEeCCCcccHHHHHHHHHHHHHhcC-C--CCcEEEEEeCCCCCCC
Q 008219 86 ---RADAVVLTYACDRPETLDELSTFWLPELRRLE-V--KVPVIVVGCKLDLRDE 134 (573)
Q Consensus 86 ---~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~-~--~~piilv~NK~D~~~~ 134 (573)
.+|++++|+|++... +......|++.++... . ..|+++|+||+|+...
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 899999999987755 5555445787776642 2 2599999999998643
No 290
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.62 E-value=1.9e-15 Score=154.36 Aligned_cols=147 Identities=14% Similarity=0.058 Sum_probs=102.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD 97 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~ 97 (573)
+|+++|++++|||||+++|+..... ... ....+...+..+.||||||+++|.......++.+|++|+|+| +
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~giT------i~~--~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~ 93 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKGTS------SDI--TMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P 93 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEEEE------SSS--EEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T
T ss_pred EEEEECCCCCCHHHHHHHHHhCCEE------EEe--eEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C
Confidence 8999999999999999999821110 111 112344567789999999999998888888999999999999 5
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCccccc-HHHHHHHHHHHhc-ccCeEEE--ecCCC---CCCc
Q 008219 98 RPETLDELSTFWLPELRRLEVKVPV-IVVGC-KLDLRDENQQVS-LEQVMMPIMQQFR-EIETCIE--CSALK---QIQV 168 (573)
Q Consensus 98 ~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~N-K~D~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~--~Sa~~---~~gi 168 (573)
.. ...... .++..++.. ++|. ++|+| |+|+ .. .... ..+.+..+...++ ...++++ +||++ |.|+
T Consensus 94 ~g-~~~qt~-e~~~~~~~~--~i~~~ivvvNNK~Dl-~~-~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 94 QG-LDAHTG-ECIIALDLL--GFKHGIIALTRSDST-HM-HAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp TC-CCHHHH-HHHHHHHHT--TCCEEEEEECCGGGS-CH-HHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred CC-CcHHHH-HHHHHHHHc--CCCeEEEEEEeccCC-CH-HHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence 43 333333 366666665 6787 89999 9999 43 1111 1112222222221 1238999 99999 9999
Q ss_pred hhHHHHHHHHH
Q 008219 169 PEVFYYAQKAV 179 (573)
Q Consensus 169 ~~l~~~i~~~~ 179 (573)
+++++.+.+.+
T Consensus 168 ~~L~~~l~~~~ 178 (370)
T 2elf_A 168 DELKARINEVA 178 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999888754
No 291
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.62 E-value=1.5e-15 Score=170.27 Aligned_cols=166 Identities=17% Similarity=0.156 Sum_probs=112.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHhcCC-------CCC--CCC-----CCCCCee--ecccccCCceeEEEEeCCCCcc
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADT-------FPA--NVP-----PVLPPTR--LPEDFYPDRVPITIIDTPSSVE 75 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~~~~-------~~~--~~~-----~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~ 75 (573)
..+..++|+++|++++|||||+++|++.. +.. ..+ .+.+.|. ....+...+..+.||||||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34567999999999999999999998741 100 000 0111111 1223456678999999999999
Q ss_pred chhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCccc-ccHHHHHHHHHHHhcc
Q 008219 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDENQQ-VSLEQVMMPIMQQFRE 153 (573)
Q Consensus 76 ~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~D~~~~~~~-~~~~~~~~~~~~~~~~ 153 (573)
+.......+..+|++|+|+|+++....+... ++..++.. ++| +|+|+||+|+...... ....+....+...++.
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QTrE--hL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQTRE--HILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTHHH--HHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHHHH--HHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 9888888899999999999999875443332 55566555 788 8999999999863110 1122233445555542
Q ss_pred ---cCeEEEecCCCC--------CCchhHHHHHHHHHhC
Q 008219 154 ---IETCIECSALKQ--------IQVPEVFYYAQKAVLH 181 (573)
Q Consensus 154 ---~~~~~~~Sa~~~--------~gi~~l~~~i~~~~~~ 181 (573)
..+++++||++| .|+.++++.+.+.+..
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 238999999999 4688999888875543
No 292
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.62 E-value=1.2e-15 Score=160.72 Aligned_cols=155 Identities=16% Similarity=0.104 Sum_probs=102.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCC--CCCC------------------------------CCCCCCCeeecccccCC
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADT--FPAN------------------------------VPPVLPPTRLPEDFYPD 61 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~~ 61 (573)
+..++|+++|++|+|||||+++|++.. +... ..++.-. .....+...
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~-~~~~~~~~~ 83 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITID-IALWKFETP 83 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCS-CSCEEEECS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEE-EEEEEEecC
Confidence 467999999999999999999998641 2110 0111000 011234566
Q ss_pred ceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcc---cHH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCC
Q 008219 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE---TLD---ELSTFWLPELRRLEVKVP-VIVVGCKLDLRDE 134 (573)
Q Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~---s~~---~~~~~~~~~l~~~~~~~p-iilv~NK~D~~~~ 134 (573)
+..+.||||||++++......++..+|++|+|+|+++.. +|+ ...+ .+..++.. ++| +|+|+||+|+...
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~~--~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFTL--GVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHHT--TCCEEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHHc--CCCeEEEEEEccccccC
Confidence 788999999999999888888999999999999988753 221 2222 33334443 565 9999999999742
Q ss_pred c--ccccHHHHHHHHHHHhcc---cCeEEEecCCCCCCchhHH
Q 008219 135 N--QQVSLEQVMMPIMQQFRE---IETCIECSALKQIQVPEVF 172 (573)
Q Consensus 135 ~--~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~ 172 (573)
. +.....+.+..+...++. ..+++++||++|.|+.++.
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 1 101122233444445542 1389999999999998653
No 293
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.62 E-value=2.1e-16 Score=170.95 Aligned_cols=154 Identities=18% Similarity=0.141 Sum_probs=83.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------CCC-----------------CCCCee--ecccccCC
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADT--FPAN----------VPP-----------------VLPPTR--LPEDFYPD 61 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~--~~~~----------~~~-----------------~~~~~~--~~~~~~~~ 61 (573)
.+..++|+|+|++|+|||||+++|+... +... ..+ ..+.|. ....+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3557899999999999999999997432 1100 000 001111 22233455
Q ss_pred ceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcc---cH--HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCc
Q 008219 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE---TL--DELSTFWLPELRRLEVKVP-VIVVGCKLDLRDEN 135 (573)
Q Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~---s~--~~~~~~~~~~l~~~~~~~p-iilv~NK~D~~~~~ 135 (573)
+..+.||||||+++|.......+..+|++|+|+|+++.. ++ .......+..+... ++| +|+|+||+|+...
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~- 330 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSW- 330 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTT-
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccc-
Confidence 688999999999999888888899999999999998642 12 11111133334444 565 9999999998763
Q ss_pred ccccHHHHHHHHHHHh----cc---cCeEEEecCCCCCCch
Q 008219 136 QQVSLEQVMMPIMQQF----RE---IETCIECSALKQIQVP 169 (573)
Q Consensus 136 ~~~~~~~~~~~~~~~~----~~---~~~~~~~Sa~~~~gi~ 169 (573)
......+....+...+ +. ..+++++||++|.||.
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 1112222223333333 21 1279999999999998
No 294
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.61 E-value=7e-16 Score=170.12 Aligned_cols=233 Identities=13% Similarity=0.080 Sum_probs=140.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcC--CCCCC---CCC--C---------CCCee--ecccccCCceeEEEEeCCCCc
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAAD--TFPAN---VPP--V---------LPPTR--LPEDFYPDRVPITIIDTPSSV 74 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~--~~~~~---~~~--~---------~~~~~--~~~~~~~~~~~~~i~Dt~G~~ 74 (573)
..+..+|+|+|++|+|||||+|+|+.. .+... ..+ + .+.|. ....+.+.++.++||||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 345689999999999999999999852 22100 000 0 00111 122344567899999999999
Q ss_pred cchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc
Q 008219 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI 154 (573)
Q Consensus 75 ~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 154 (573)
++......+++.+|++|+|+|+++..+..... ++..+... ++|+++|+||+|+... ...+....+...++..
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~--~~~~~~~~--~~p~ilviNK~Dl~~~----~~~~~~~~l~~~l~~~ 158 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTET--VWRQATTY--GVPRIVFVNKMDKLGA----NFEYSVSTLHDRLQAN 158 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCCEEEEEECTTSTTC----CHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHH--HHHHHHHc--CCCEEEEEECCCcccc----chHHHHHHHHHHhCCC
Confidence 99888899999999999999999987776654 33445554 7999999999999865 2344445555555431
Q ss_pred --CeEEEecCCCCCCchhHHHHHHHHHh-CC-C-CCCcc--hhhhhchhhHHHHHHHHHHhccCC---------CCCccC
Q 008219 155 --ETCIECSALKQIQVPEVFYYAQKAVL-HP-T-GPLFD--QESQALKPRCVRALKRIFILCDHD---------RDGALS 218 (573)
Q Consensus 155 --~~~~~~Sa~~~~gi~~l~~~i~~~~~-~~-~-~~~~~--~~~~~~~~~~~~~l~~i~~~~~~~---------~~~~l~ 218 (573)
...+++|+ +.|+..+++.+..... ++ . ...+. ..............+.++...... .+..++
T Consensus 159 ~~~~~ipisa--~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~ 236 (693)
T 2xex_A 159 AAPIQLPIGA--EDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEIS 236 (693)
T ss_dssp EEESEEEECC--GGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCC
T ss_pred ceeEEeeccc--CCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCC
Confidence 24678888 6667766655432221 11 0 00000 000111111111222222111110 123455
Q ss_pred chhhhHHhhh----------hcCCCCChhHHHHHHHHHhhhccCCcc
Q 008219 219 DAELNDFQVK----------CFNSPLQPSEIVGVKRVVQEKLREGVN 255 (573)
Q Consensus 219 ~~el~~~q~~----------~~~~~l~~~~i~~l~~~i~~~~~~~~~ 255 (573)
.+++...-++ +++.++...+++.+++.+.+++|+...
T Consensus 237 ~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~ 283 (693)
T 2xex_A 237 VSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLD 283 (693)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGG
T ss_pred HHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchh
Confidence 5555443322 477788888999999999999886543
No 295
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.61 E-value=3e-15 Score=146.86 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=84.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhH-------h--
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPA--NVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLG-------E-- 82 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~-- 82 (573)
...++|+++|.+|||||||+|+|++..+.. ..+++... .....+...+..+.||||||+.++..... .
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPR-PVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSS-CEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccee-eEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 457999999999999999999999887532 23332111 12334456678999999999876643221 1
Q ss_pred hhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcC-CC--CcEEEEEeCCCCCCC
Q 008219 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRLE-VK--VPVIVVGCKLDLRDE 134 (573)
Q Consensus 83 ~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~-~~--~piilv~NK~D~~~~ 134 (573)
..+.+|++++|+|++.. ++......|+..+.... .+ +|+++|+||+|+...
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 13479999999998764 45555445888886542 22 699999999998764
No 296
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.61 E-value=3e-16 Score=169.19 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=101.8
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEE------EEcC--CCeEEEEEEecCChhHHHhhhcc
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNV------VDQP--GGTKKTVVLREIPEEAVAKLLSN 496 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~i~dt~G~~~~~~~~~~ 496 (573)
....+||+++|.+|||||||+++|.+..+...+.++.+....... +... +....+.+|||+|++.+..+ .
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~--~ 115 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS--H 115 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT--C
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH--H
Confidence 345689999999999999999999999987777777776555431 1222 23578999999999988887 7
Q ss_pred ccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccC
Q 008219 497 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 497 ~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 572 (573)
..+++++|++++|||+++. +....|+..+....+ ++|+++|+||+|+...+ +..++.++++..+++++|
T Consensus 116 ~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~----~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 185 (535)
T 3dpu_A 116 QFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG----KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFH 185 (535)
T ss_dssp HHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS----SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEE
T ss_pred HHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC----CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceE
Confidence 7888999999999999764 556778888877654 69999999999997654 456777888888877664
No 297
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.61 E-value=9.8e-15 Score=155.70 Aligned_cols=117 Identities=11% Similarity=0.058 Sum_probs=83.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CC---------CCCCee--ecccccCCceeEEEEeCC
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANV-----------PP---------VLPPTR--LPEDFYPDRVPITIIDTP 71 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~-----------~~---------~~~~~~--~~~~~~~~~~~~~i~Dt~ 71 (573)
.+..+|+|+|++|||||||+++|+........ .. ..+.+. ....+.+.++.+.|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 35689999999999999999999964211100 00 000010 122344667899999999
Q ss_pred CCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 008219 72 SSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (573)
Q Consensus 72 G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~ 134 (573)
|+.++......+++.+|++|+|+|+++...... ..++..++.. ++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~~--~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRLR--DTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHHc--CCCEEEEEcCcCCccc
Confidence 999998888899999999999999988654332 2244444443 7999999999999764
No 298
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.61 E-value=6.8e-15 Score=161.66 Aligned_cols=116 Identities=20% Similarity=0.191 Sum_probs=85.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC----------------CCe--eecccccCCceeEEEEeCCCCc
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVL----------------PPT--RLPEDFYPDRVPITIIDTPSSV 74 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~----------------~~~--~~~~~~~~~~~~~~i~Dt~G~~ 74 (573)
..+..+|+|+|++|+|||||+++|++........+.. +.+ .....+.+.++.++||||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 3456789999999999999999999544321111110 000 1122334567899999999999
Q ss_pred cchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 008219 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLR 132 (573)
Q Consensus 75 ~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~ 132 (573)
++......+++.+|++++|+|+++....... .++..++.. ++|+++|+||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence 9988888999999999999998876554433 366666654 79999999999987
No 299
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.60 E-value=8.6e-16 Score=150.87 Aligned_cols=133 Identities=17% Similarity=0.115 Sum_probs=97.7
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHh------hhcccccc-
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK------LLSNKDSL- 500 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~------~~~~~~~~- 500 (573)
.+||+++|++|||||||+|+|++..+.....++.+.......+... ...+.+|||+|...+.. + ...++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~--~~~~~~ 78 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR--EKEFLVVDLPGIYSLTAHSIDELI--ARNFIL 78 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET--TEEEEEEECCCCSCCCSSCHHHHH--HHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC--CceEEEEeCCCccccccCCHHHHH--HHHhhh
Confidence 5799999999999999999999987744445555555555555554 35688999999765433 2 33444
Q ss_pred -ccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 501 -AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 501 -~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
.++|++++|+|+++.. ....+...+.... .+|+++|+||+|+...+....+...+++.++++++
T Consensus 79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~ 143 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM---RNLFLTLELFEME-----VKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVI 143 (271)
T ss_dssp TTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT-----CCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEE
T ss_pred ccCCcEEEEEecCCcch---hhHHHHHHHHhcC-----CCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEE
Confidence 6899999999998753 3344555555442 39999999999997655444458889999998875
No 300
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.60 E-value=4.9e-15 Score=163.46 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=108.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeee--------ccccc------------------CCc---
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPAN--VPPVLPPTRL--------PEDFY------------------PDR--- 62 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~~~--------~~~~~------------------~~~--- 62 (573)
...++|+|+|++|||||||+|+|++..+.+. .|++...+.+ ...+. ..+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 4579999999999999999999998875433 3433111110 00000 000
Q ss_pred ---------------------------eeEEEEeCCCCccc---hhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHH
Q 008219 63 ---------------------------VPITIIDTPSSVED---RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPE 112 (573)
Q Consensus 63 ---------------------------~~~~i~Dt~G~~~~---~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~ 112 (573)
..+.||||||.... ......+++.+|++|+|+|++++.+..... .|.+.
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHHHH
Confidence 46999999997653 334557899999999999999888777665 36555
Q ss_pred HHhcCCCCcEEEEEeCCCCCCCccccc------HHH----HHHHHHHHh----c------ccCeEEEecCC---------
Q 008219 113 LRRLEVKVPVIVVGCKLDLRDENQQVS------LEQ----VMMPIMQQF----R------EIETCIECSAL--------- 163 (573)
Q Consensus 113 l~~~~~~~piilv~NK~D~~~~~~~~~------~~~----~~~~~~~~~----~------~~~~~~~~Sa~--------- 163 (573)
+... +.|+++|+||+|+... ...+ .+. ....+...+ + ...++++|||+
T Consensus 226 l~~~--~~~iiiVlNK~Dl~~~-~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 226 IKGR--GLTVFFLVNAWDQVRE-SLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TTTS--CCCEEEEEECGGGGGG-GCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred HHhh--CCCEEEEEECcccccc-cccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 5544 6799999999998654 1010 010 111111111 1 11268999999
Q ss_pred -----CCCCchhHHHHHHHHHh
Q 008219 164 -----KQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 164 -----~~~gi~~l~~~i~~~~~ 180 (573)
++.|+++++..+.+.+.
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHH
T ss_pred chhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988654
No 301
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.59 E-value=4.7e-15 Score=142.79 Aligned_cols=138 Identities=13% Similarity=0.082 Sum_probs=86.5
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCC--CCcccEEEEEEEcCCCeEEEEEEecCC-----------hhHHH
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTP--TTDERYAVNVVDQPGGTKKTVVLREIP-----------EEAVA 491 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~dt~G-----------~~~~~ 491 (573)
....+||+++|.+|||||||+|+|++..+.....+ +.+.......+... ...+.+|||+| .+.+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK--ETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET--TEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC--CceEEEEECCCccCCCCCHHHHHHHHH
Confidence 34678999999999999999999999887655544 33333333344444 46788999999 33344
Q ss_pred hhhccccccccccEEEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccc-------hhhHHH
Q 008219 492 KLLSNKDSLAACDIAVFVHDSSDESS--WKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMA-------IQDSTR 562 (573)
Q Consensus 492 ~~~~~~~~~~~~d~vilv~D~~~~~s--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-------~~~~~~ 562 (573)
.. ...+++++|++++|+|+++... ...+..+...+.... ..|+++|+||+|+...+.. .+..++
T Consensus 104 ~~--~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~-----~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~ 176 (239)
T 3lxx_A 104 RC--ILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERA-----RSFMILIFTRKDDLGDTNLHDYLREAPEDIQD 176 (239)
T ss_dssp HH--HHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHH-----GGGEEEEEECGGGC------------CHHHHH
T ss_pred HH--HHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhc-----cceEEEEEeCCccCCcccHHHHHHhchHHHHH
Confidence 43 4455678999999999976433 222222222222211 5699999999998654321 235677
Q ss_pred HHHHcCCcc
Q 008219 563 VFTFLVMVL 571 (573)
Q Consensus 563 ~~~~~~~~~ 571 (573)
++++.+..|
T Consensus 177 l~~~~~~~~ 185 (239)
T 3lxx_A 177 LMDIFGDRY 185 (239)
T ss_dssp HHHHHSSSE
T ss_pred HHHHcCCEE
Confidence 777777554
No 302
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.59 E-value=3.7e-16 Score=159.39 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=81.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCC-CCCCCC--------CCCCCeeeccccc--CCceeEEEEeCCCC-------ccc
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADT-FPANVP--------PVLPPTRLPEDFY--PDRVPITIIDTPSS-------VED 76 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~-~~~~~~--------~~~~~~~~~~~~~--~~~~~~~i~Dt~G~-------~~~ 76 (573)
..++|+|+|++|||||||+|+|.+.. +...+. ++.........+. .....+.+|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 35899999999999999999987654 322221 1111111122222 22457999999998 444
Q ss_pred hhhhH-------hhhccCCEE-----------EEEEeCCC-cccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 008219 77 RGKLG-------EELRRADAV-----------VLTYACDR-PETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ 137 (573)
Q Consensus 77 ~~~~~-------~~~~~ad~i-----------l~v~D~~~-~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~ 137 (573)
..... .+++.++++ ++||++++ ..++..++..|++.+. .++|+|+|+||+|+... ++
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~-~e 191 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTL-KE 191 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCH-HH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCH-HH
Confidence 44443 555444332 34455445 5667777655666553 48999999999999865 22
Q ss_pred ccH-HHHHHHHHHHhcccCeEEEecCCCCCCchhHHHHHHHHHh
Q 008219 138 VSL-EQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 138 ~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
+.. .+........++ .+++++||++|.| ++.|..+.+.+.
T Consensus 192 v~~~k~~i~~~~~~~~--i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 192 RERLKKRILDEIEEHN--IKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHHHTTCC---CCSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC--CCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 211 012222222232 2789999999998 777777776654
No 303
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.59 E-value=5.3e-15 Score=137.20 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=88.1
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCC----------hhHHHhhhc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP----------EEAVAKLLS 495 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G----------~~~~~~~~~ 495 (573)
...+||+|+|.+|||||||+++|++....... ++.++.......... ..+.+|||+| .+.+..+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~~~-- 94 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-KTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWKRL-- 94 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-SSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHHHH--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccccc-CCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHHHH--
Confidence 45579999999999999999999998855443 333322332333333 2467999999 6667766
Q ss_pred cccccccc---cEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc---cchhhHHHHHHHc
Q 008219 496 NKDSLAAC---DIAVFVHDSSDESSWK--RATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA---MAIQDSTRVFTFL 567 (573)
Q Consensus 496 ~~~~~~~~---d~vilv~D~~~~~s~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~ 567 (573)
...+++.+ |++++|+|+++..+.. .+..|+.. . ++|+++|+||+|+.... ...++.++++..+
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence 55556555 9999999998764332 22333332 2 79999999999997543 2345566666654
Q ss_pred C-CccC
Q 008219 568 V-MVLY 572 (573)
Q Consensus 568 ~-~~~~ 572 (573)
+ +++|
T Consensus 166 ~~~~~~ 171 (195)
T 3pqc_A 166 GEYTII 171 (195)
T ss_dssp CCSCEE
T ss_pred CCCceE
Confidence 4 4443
No 304
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.58 E-value=2.5e-15 Score=142.98 Aligned_cols=119 Identities=12% Similarity=-0.022 Sum_probs=80.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCC-CCCCCCCCcccE-EEEEEEcCCCeEEEEEEecCC----------hhHHHhh
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPF-SDNYTPTTDERY-AVNVVDQPGGTKKTVVLREIP----------EEAVAKL 493 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~dt~G----------~~~~~~~ 493 (573)
...++|+|+|.+|||||||+|+|++..+ .......+++.. ....+.. .+...+.+|||+| ++.+..+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC-TTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC-CCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 4567999999999999999999999873 333333333333 2222221 2456788999999 4555555
Q ss_pred hcccccccc---ccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 494 LSNKDSLAA---CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 494 ~~~~~~~~~---~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
...+++. +|++++|+|++++.+. ....++..+... ++|+++|+||+|+...+
T Consensus 106 --~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~~------~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 106 --LSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAPT------GKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp --HHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGGG------CCCEEEEEECGGGSCHH
T ss_pred --HHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHhc------CCCEEEEEeccccCChh
Confidence 4445544 8899999999986332 122344444432 79999999999997644
No 305
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.58 E-value=1.9e-15 Score=159.60 Aligned_cols=156 Identities=18% Similarity=0.114 Sum_probs=90.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCC--CCC------------------------CCCC---CCCCee--ecccccCCc
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADT--FPA------------------------NVPP---VLPPTR--LPEDFYPDR 62 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~--~~~------------------------~~~~---~~~~~~--~~~~~~~~~ 62 (573)
+..++|+++|++++|||||+++|+... +.. +... ..+.|. ....+...+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 456899999999999999999997521 110 0000 000111 112334557
Q ss_pred eeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcc---cHHH---HHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCc
Q 008219 63 VPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE---TLDE---LSTFWLPELRRLEVKVP-VIVVGCKLDLRDEN 135 (573)
Q Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~---s~~~---~~~~~~~~l~~~~~~~p-iilv~NK~D~~~~~ 135 (573)
..+.||||||+++|.......+..+|++|+|+|+++.. +|+. ..+ .+..+... ++| +|+|+||+|+....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e-~l~~~~~~--~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTRE-HAVLARTQ--GINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH-HHHHHHHT--TCSSEEEEEECTTSTTCS
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHH-HHHHHHHc--CCCEEEEEEECccCCCcc
Confidence 88999999999999888888899999999999999862 2221 111 22222333 677 99999999996421
Q ss_pred ----ccccHHHHHHHHHHHh-cc----cCeEEEecCCCCCCchhHH
Q 008219 136 ----QQVSLEQVMMPIMQQF-RE----IETCIECSALKQIQVPEVF 172 (573)
Q Consensus 136 ----~~~~~~~~~~~~~~~~-~~----~~~~~~~Sa~~~~gi~~l~ 172 (573)
+.....+....+...+ +. ..+++++||++|.|+.+++
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 0011112233344443 21 1379999999999999876
No 306
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.58 E-value=2.2e-14 Score=144.15 Aligned_cols=159 Identities=19% Similarity=0.179 Sum_probs=97.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----CC---CCeeec-------------------------------
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPP----VL---PPTRLP------------------------------- 55 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~----~~---~~~~~~------------------------------- 55 (573)
....+|+|+|++|||||||+|+|++..+.+...+ .. .+++.+
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4567999999999999999999999876322110 00 011100
Q ss_pred ---------------------cc-ccCCceeEEEEeCCCCcc-------------chhhhHhhhccCCEEEEEEeCCCcc
Q 008219 56 ---------------------ED-FYPDRVPITIIDTPSSVE-------------DRGKLGEELRRADAVVLTYACDRPE 100 (573)
Q Consensus 56 ---------------------~~-~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~il~v~D~~~~~ 100 (573)
+. .......+.||||||+.. +......+++.+|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00 122346899999999864 2334557899999999999974432
Q ss_pred cH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc-CeEEEecCC---C---CCCchhHH
Q 008219 101 TL-DELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI-ETCIECSAL---K---QIQVPEVF 172 (573)
Q Consensus 101 s~-~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~---~---~~gi~~l~ 172 (573)
.. .... .+...+... +.|+++|+||+|+.... .. ....+...+... ..++++|+. + +.|+.+++
T Consensus 182 ~~~~~~~-~i~~~~~~~--~~~~i~v~NK~Dl~~~~-~~----~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~ 253 (315)
T 1jwy_B 182 LANSDAL-QLAKEVDPE--GKRTIGVITKLDLMDKG-TD----AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESL 253 (315)
T ss_dssp STTCSHH-HHHHHHCSS--CSSEEEEEECTTSSCSS-CC----CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHH
T ss_pred hhhhHHH-HHHHHhCCC--CCcEEEEEcCcccCCcc-hH----HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHH
Confidence 11 1111 255555443 78999999999998652 11 111122211111 245666655 4 78899999
Q ss_pred HHHHHHHh
Q 008219 173 YYAQKAVL 180 (573)
Q Consensus 173 ~~i~~~~~ 180 (573)
+.+...+.
T Consensus 254 ~~~~~~~~ 261 (315)
T 1jwy_B 254 KSEILYFK 261 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98877654
No 307
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.58 E-value=1.5e-14 Score=159.44 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=85.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCC-----------CCCCee--ecccccCCceeEEEEeCCCCc
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-----VPP-----------VLPPTR--LPEDFYPDRVPITIIDTPSSV 74 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~-----~~~-----------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~ 74 (573)
..+..+|+|+|++|+|||||+++|+....... ..+ ..+.|. ....+.+.++.++||||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 35678999999999999999999984211100 000 000111 122334567899999999999
Q ss_pred cchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 008219 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (573)
Q Consensus 75 ~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~ 134 (573)
++......+++.+|++|+|+|+++..+..... .|. .+... ++|+++|+||+|+...
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~-~~~~~--~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWR-QAEKY--KVPRIAFANKMDKTGA 144 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHH-HHHHc--CCCEEEEEECCCcccC
Confidence 99988999999999999999999988777665 244 44444 8999999999998764
No 308
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.57 E-value=3.8e-15 Score=156.68 Aligned_cols=121 Identities=20% Similarity=0.146 Sum_probs=69.9
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEE-EEEEcCCCeEEEEEEecCChhHHHhhh------ccccc
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAV-NVVDQPGGTKKTVVLREIPEEAVAKLL------SNKDS 499 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~dt~G~~~~~~~~------~~~~~ 499 (573)
..++|+++|.+|||||||+|+|++.+...+...+++++... ..+..+ +..+.+|||+|.+.+.... ++..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~--g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD--KTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEET--TEEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 45899999999999999999999987655554444444433 444554 3678999999987655331 13457
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 500 LAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 500 ~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
++.+|++++|+|++++.+++....+..-+.... ++|+++|+||+|+....
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-----~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP-----AAKFLTVANKLDRAANA 359 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-----TSEEEEEEECTTSCTTT
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-----CCCEEEEEECcCCCCcc
Confidence 899999999999999988764433333222222 68999999999997654
No 309
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.57 E-value=3.4e-14 Score=156.78 Aligned_cols=133 Identities=18% Similarity=0.105 Sum_probs=91.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCC--CCCC---CCC--C---------CCCee--ecccccCCc-------eeEEE
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADT--FPAN---VPP--V---------LPPTR--LPEDFYPDR-------VPITI 67 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~--~~~~---~~~--~---------~~~~~--~~~~~~~~~-------~~~~i 67 (573)
..+..+|+|+|+.|+|||||+++|+... +... ..+ . .+.|. ....+.+.+ +.++|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3456899999999999999999997532 1110 000 0 00111 111222333 88999
Q ss_pred EeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHH
Q 008219 68 IDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPI 147 (573)
Q Consensus 68 ~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~ 147 (573)
|||||+.+|......+++.+|++|+|+|+++........ ++..+... ++|+++|+||+|+... ...+....+
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~--~~~~~~~~--~ip~ilviNKiD~~~~----~~~~~~~~l 158 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET--VWRQANKY--KVPRIAFVNKMDRMGA----NFLKVVNQI 158 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH--HHHHHHHc--CCCEEEEEeCCCcccc----cHHHHHHHH
Confidence 999999999888999999999999999999876655443 33444443 7999999999998765 234455556
Q ss_pred HHHhcc
Q 008219 148 MQQFRE 153 (573)
Q Consensus 148 ~~~~~~ 153 (573)
...++.
T Consensus 159 ~~~l~~ 164 (704)
T 2rdo_7 159 KTRLGA 164 (704)
T ss_pred HHHhCC
Confidence 666653
No 310
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.57 E-value=7.5e-15 Score=146.08 Aligned_cols=132 Identities=17% Similarity=0.255 Sum_probs=92.2
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChh-HHHh-----h-hccccccc
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEE-AVAK-----L-LSNKDSLA 501 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~-~~~~-----~-~~~~~~~~ 501 (573)
.+|+++|++|||||||+|+|++......+..+.+++.....+... +...+.+|||+|.. .... + .....+++
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~ 87 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 87 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE-CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHh
Confidence 479999999999999999999988765554455555444333333 45678899999986 3211 1 01456789
Q ss_pred cccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc-cccchhhHHHHHHHcCC
Q 008219 502 ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-FAMAIQDSTRVFTFLVM 569 (573)
Q Consensus 502 ~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~ 569 (573)
.+|++++|+|+++ +...+.++.+..... +.|+++|+||+|+.. .....+...++++.+++
T Consensus 88 ~~D~vl~Vvd~~~---~~~~~~~i~~~l~~~-----~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~ 148 (301)
T 1ega_A 88 DVELVIFVVEGTR---WTPDDEMVLNKLREG-----KAPVILAVNKVDNVQEKADLLPHLQFLASQMNF 148 (301)
T ss_dssp CEEEEEEEEETTC---CCHHHHHHHHHHHSS-----SSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCC
T ss_pred cCCEEEEEEeCCC---CCHHHHHHHHHHHhc-----CCCEEEEEECcccCccHHHHHHHHHHHHHhcCc
Confidence 9999999999976 444455655444332 799999999999986 23334556667666654
No 311
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.56 E-value=5.4e-15 Score=148.90 Aligned_cols=133 Identities=19% Similarity=0.110 Sum_probs=96.6
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHH----Hhhhcccc---ccc
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV----AKLLSNKD---SLA 501 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~----~~~~~~~~---~~~ 501 (573)
.+|+++|.+|||||||+|+|++........+..+.......+.++ +...+.+|||+|.... ..+ ... .++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~-~~~~~~l~DtPG~i~~a~~~~~l--~~~fl~~i~ 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGL--GHQFLRHIE 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTT--HHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeC-CCceEEEecCCCCcccccccchh--HHHHHHHHH
Confidence 369999999999999999999876543333334444445556666 4467899999996431 112 122 345
Q ss_pred cccEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcC
Q 008219 502 ACDIAVFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 568 (573)
Q Consensus 502 ~~d~vilv~D~~~---~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 568 (573)
++|++++|+|+++ +.+++.+..|+.++..+.+... ++|+++|+||+|+...+ +..+++++.++
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~-~~p~ilV~NK~Dl~~~~---e~~~~l~~~l~ 301 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLT-ERPQIIVANKMDMPEAA---ENLEAFKEKLT 301 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTT-TSCBCBEEECTTSTTHH---HHHHHHHHHCC
T ss_pred hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhc-CCCEEEEEECccCCCCH---HHHHHHHHHhh
Confidence 6999999999998 7889999999999888753211 79999999999997632 34566777665
No 312
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.55 E-value=2.2e-14 Score=143.15 Aligned_cols=120 Identities=16% Similarity=0.138 Sum_probs=93.8
Q ss_pred CCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCC----------CcccHHHHHHHHHHHHHhc--CCCCcEEEEEe
Q 008219 60 PDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD----------RPETLDELSTFWLPELRRL--EVKVPVIVVGC 127 (573)
Q Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~----------~~~s~~~~~~~~~~~l~~~--~~~~piilv~N 127 (573)
.+++.+++|||+|++.+...+..++++++++|+|||++ +..++.+... |+..+... ..+.|++||+|
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~-~~~~i~~~~~~~~~piiLv~N 236 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA-VFKDIMTNEFLKGAVKLIFLN 236 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH-HHHHHHHCGGGTTSEEEEEEE
T ss_pred eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH-HHHHHhhhhccCCCeEEEEEE
Confidence 45688999999999999999999999999999999998 6778887775 55555432 25899999999
Q ss_pred CCCCCCCc--------------ccccHHHHHHHHHHHh------c------------------ccCeEEEecCCCCCCch
Q 008219 128 KLDLRDEN--------------QQVSLEQVMMPIMQQF------R------------------EIETCIECSALKQIQVP 169 (573)
Q Consensus 128 K~D~~~~~--------------~~~~~~~~~~~~~~~~------~------------------~~~~~~~~Sa~~~~gi~ 169 (573)
|+|+.... .....+++...+...+ . ....++++||+++.||+
T Consensus 237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~ 316 (340)
T 4fid_A 237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK 316 (340)
T ss_dssp CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence 99986421 0123556666677777 1 11268999999999999
Q ss_pred hHHHHHHHHHh
Q 008219 170 EVFYYAQKAVL 180 (573)
Q Consensus 170 ~l~~~i~~~~~ 180 (573)
.+|..+.+.++
T Consensus 317 ~vF~~v~~~Il 327 (340)
T 4fid_A 317 RVFMLAVDVIM 327 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888765
No 313
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.53 E-value=4.6e-14 Score=140.43 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=92.1
Q ss_pred CCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCC----------CcccHHHHHHHHHHHHHhc--CCCCcEEEEEe
Q 008219 60 PDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD----------RPETLDELSTFWLPELRRL--EVKVPVIVVGC 127 (573)
Q Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~----------~~~s~~~~~~~~~~~l~~~--~~~~piilv~N 127 (573)
.+++.+.+|||+|++.+...+..++++++++|+|||++ +..++.+... |+..+... ..+.|++|++|
T Consensus 164 ~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~iiL~~N 242 (327)
T 3ohm_A 164 LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLN 242 (327)
T ss_dssp ETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCEEEEEEE
T ss_pred eeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCceEEEEEE
Confidence 45678999999999999999999999999999999665 5666776664 55555432 25899999999
Q ss_pred CCCCCCCc---------------ccccHHHHHHHHHHHhccc-------CeEEEecCCCCCCchhHHHHHHHHHhC
Q 008219 128 KLDLRDEN---------------QQVSLEQVMMPIMQQFREI-------ETCIECSALKQIQVPEVFYYAQKAVLH 181 (573)
Q Consensus 128 K~D~~~~~---------------~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 181 (573)
|+|+.... ...+.+++...+...|... ..++++||+++.||+++|..+.+.++.
T Consensus 243 K~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 243 KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 318 (327)
T ss_dssp CHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence 99986531 0245566655555554321 257899999999999999999887754
No 314
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.53 E-value=2e-14 Score=147.07 Aligned_cols=152 Identities=15% Similarity=0.192 Sum_probs=97.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--ee----------------------------------------
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP--TR---------------------------------------- 53 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~--~~---------------------------------------- 53 (573)
-.+|+|+|++|||||||+|+|++..+.+...++... +.
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 349999999999999999999998764443221110 00
Q ss_pred ------------eccc-ccCCceeEEEEeCCCCccc-------------hhhhHhhhccCCEEEEEEeCCCcccHHHHHH
Q 008219 54 ------------LPED-FYPDRVPITIIDTPSSVED-------------RGKLGEELRRADAVVLTYACDRPETLDELST 107 (573)
Q Consensus 54 ------------~~~~-~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~ 107 (573)
+... .......+.+|||||+..+ ......+++.+|++|+|+|..+......
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--- 190 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--- 190 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC---
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH---
Confidence 0000 0122456899999998775 4456688999999999998765543332
Q ss_pred HHHHHHHhcC-CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHH
Q 008219 108 FWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFYY 174 (573)
Q Consensus 108 ~~~~~l~~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (573)
.|...++... .+.|+++|+||+|+... .....+ ........++ .+++++|++++.++++.+..
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~-~~~~~~-~~~~~~~~~~--~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDK-GTDAVE-ILEGRSFKLK--YPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCT-TCCSHH-HHTTSSSCCS--SCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCC-cccHHH-HHcCcccccc--CCeEEEEECChHHhccCCCH
Confidence 2444444433 37899999999998865 222111 1111111122 37999999999888776544
No 315
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.52 E-value=5.6e-15 Score=152.74 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=92.3
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCC-CCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhc-----cccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLS-----NKDS 499 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~-----~~~~ 499 (573)
...++|+|+|.+|||||||+|+|++..+.... .+..+.......+... +...+.+|||+|.+.+..+.. ...+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 45689999999999999999999998875433 3334444455556665 344788999999876544310 2346
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 500 LAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 500 ~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
++++|++++|+|++.. .....|+..+... ++|+++|+||+|+...+.. +..+++++.++++++
T Consensus 111 l~~aD~vllVvD~~~~---~~~~~~l~~l~~~------~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~ 173 (423)
T 3qq5_A 111 FYRADCGILVTDSAPT---PYEDDVVNLFKEM------EIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVL 173 (423)
T ss_dssp HTSCSEEEEECSSSCC---HHHHHHHHHHHHT------TCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCC
T ss_pred HhcCCEEEEEEeCCCh---HHHHHHHHHHHhc------CCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEE
Confidence 7899999999999333 3345666666655 7999999999999875433 566777777777765
No 316
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.52 E-value=1.1e-14 Score=148.51 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=93.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC---CC-----------------------eee--------------
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVL---PP-----------------------TRL-------------- 54 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~---~~-----------------------~~~-------------- 54 (573)
...+|+|+|++|||||||+|+|++..+.+...++. +. ++.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999988653322110 00 000
Q ss_pred -----------ccc-ccCCceeEEEEeCCCCcc-------------chhhhHhhhccCC-EEEEEEeCCCcccHHHHHH-
Q 008219 55 -----------PED-FYPDRVPITIIDTPSSVE-------------DRGKLGEELRRAD-AVVLTYACDRPETLDELST- 107 (573)
Q Consensus 55 -----------~~~-~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad-~il~v~D~~~~~s~~~~~~- 107 (573)
... .......+.||||||+.. +..+...++..++ ++++|+|++.. +.....
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~~~~ 187 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANSDAL 187 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGCHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchhHHH
Confidence 000 011246799999999743 2234456666555 55556665542 332221
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHH-hc---ccCeEEEecCCCCCCchhHHHHHHH
Q 008219 108 FWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQ-FR---EIETCIECSALKQIQVPEVFYYAQK 177 (573)
Q Consensus 108 ~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~Sa~~~~gi~~l~~~i~~ 177 (573)
.+++.+.. .+.|+++|+||+|+...... ..+. +... +. ...+++++||+++.|++++++.+.+
T Consensus 188 ~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~--~~~~---~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 188 KVAKEVDP--QGQRTIGVITKLDLMDEGTD--ARDV---LENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHCT--TCTTEEEEEECGGGSCTTCC--CHHH---HTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHhCc--CCCceEEEeccccccCcchh--HHHH---HhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 14444443 37899999999999765211 1111 1111 10 0126788999999999999998876
No 317
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.51 E-value=7.1e-14 Score=137.24 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=64.3
Q ss_pred EEeCCCCcc-chhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHH
Q 008219 67 IIDTPSSVE-DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMM 145 (573)
Q Consensus 67 i~Dt~G~~~-~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~ 145 (573)
|-..||+.. ........+..+|+++.|+|+.++.+..+.. +.+.+ .++|+++|+||+|+... +..+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~--l~~~l----~~kp~ilVlNK~DL~~~-------~~~~ 69 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPM--IEDIL----KNKPRIMLLNKADKADA-------AVTQ 69 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHH--HHHHC----SSSCEEEEEECGGGSCH-------HHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHH--HHHHH----CCCCEEEEEECcccCCH-------HHHH
Confidence 445688653 3445668899999999999999987775311 12222 37999999999999864 1122
Q ss_pred HHHHHhcc-cCeEEEecCCCCCCchhHHHHHHH
Q 008219 146 PIMQQFRE-IETCIECSALKQIQVPEVFYYAQK 177 (573)
Q Consensus 146 ~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~i~~ 177 (573)
.+...+.. -.+++.+||+++.|++++++.+.+
T Consensus 70 ~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~ 102 (282)
T 1puj_A 70 QWKEHFENQGIRSLSINSVNGQGLNQIVPASKE 102 (282)
T ss_dssp HHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEECCCcccHHHHHHHHHH
Confidence 22232311 127899999999999999987654
No 318
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.50 E-value=3.4e-14 Score=137.29 Aligned_cols=141 Identities=12% Similarity=-0.010 Sum_probs=83.0
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCC-CcccEE-EEEEEcCCCeEEEEEEecCCh--------hHH-Hhhh
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPT-TDERYA-VNVVDQPGGTKKTVVLREIPE--------EAV-AKLL 494 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~i~dt~G~--------~~~-~~~~ 494 (573)
...++|+++|.+|||||||+|+|++.........+ +++... ...+.. +...+.+|||+|. +.+ ..+.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW--DKCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE--TTEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE--CCcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 45689999999999999999999998876655443 233322 233333 3567889999994 211 1110
Q ss_pred c-cccccccccEEEEEEeCCChhhH-HHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccc-------hhhHHHHHH
Q 008219 495 S-NKDSLAACDIAVFVHDSSDESSW-KRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMA-------IQDSTRVFT 565 (573)
Q Consensus 495 ~-~~~~~~~~d~vilv~D~~~~~s~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-------~~~~~~~~~ 565 (573)
+ .....+++|++++|+|+++.... ..+-.++..+...... +.|+|||+||+|+...... ....+++.+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~---~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVL---KWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGG---GGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhh---ccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH
Confidence 0 01123899999999999853111 1122333333221111 6899999999999753211 134567777
Q ss_pred HcCCcc
Q 008219 566 FLVMVL 571 (573)
Q Consensus 566 ~~~~~~ 571 (573)
+.+..+
T Consensus 174 ~~g~~~ 179 (247)
T 3lxw_A 174 ECGGRV 179 (247)
T ss_dssp HTTTCE
T ss_pred HcCCeE
Confidence 766543
No 319
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.49 E-value=3.3e-13 Score=139.04 Aligned_cols=156 Identities=19% Similarity=0.214 Sum_probs=103.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeecccccCC-ceeEEEEeCCCCccchh----h---hHhhhccCC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYPD-RVPITIIDTPSSVEDRG----K---LGEELRRAD 88 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~----~---~~~~~~~ad 88 (573)
.|+|+|++|||||||+++|++... ...++.+.-.... ..+... ...+.+|||||+..... . ....+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~-G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNL-GVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEE-EEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceeccee-eEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 589999999999999999998653 1223322111111 112222 36799999999754211 1 123456799
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEEEecCCCC
Q 008219 89 AVVLTYACDRPETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (573)
Q Consensus 89 ~il~v~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (573)
.++.|+|++ ...+..+.. |.+.+.... .+.|.++|+||+|+... .... .+.......+ .+++.+||+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~-g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~-~l~~~l~~~g--~~vi~iSA~~g 309 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVK-ALADALAREG--LAVLPVSALTG 309 (416)
T ss_dssp EEEEEEETT-SCHHHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHH-HHHHHHHTTT--SCEEECCTTTC
T ss_pred hhhEEeCCc-cCCHHHHHH-HHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHH-HHHHHHHhcC--CeEEEEECCCc
Confidence 999999998 666666653 666665543 26899999999998753 1111 1122222222 27999999999
Q ss_pred CCchhHHHHHHHHHhCC
Q 008219 166 IQVPEVFYYAQKAVLHP 182 (573)
Q Consensus 166 ~gi~~l~~~i~~~~~~~ 182 (573)
.|++++++.+.+.+...
T Consensus 310 ~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 310 AGLPALKEALHALVRST 326 (416)
T ss_dssp TTHHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 99999999999987543
No 320
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.49 E-value=1.1e-14 Score=153.19 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=83.9
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccE-EEEEEEcCCCeEEEEEEecCChh-HHHhhh------cccc
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERY-AVNVVDQPGGTKKTVVLREIPEE-AVAKLL------SNKD 498 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~dt~G~~-~~~~~~------~~~~ 498 (573)
..++|+++|.||||||||+|+|++.++..+...+++++. ....+.++ ...+.+|||+|.+ .+.... +...
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~--g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecC--CeEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 348999999999999999999999876655544444443 33445554 3578999999986 432210 0335
Q ss_pred ccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 499 SLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 499 ~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
+++.+|++++|+|++++.+++... ++..+ . ++|+++|+||+|+..
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~-il~~l---~-----~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRK-ILERI---K-----NKRYLVVINKVDVVE 364 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHH-HHHHH---T-----TSSEEEEEEECSSCC
T ss_pred HhhcccEEEEEecCCCCCCHHHHH-HHHHh---c-----CCCEEEEEECccccc
Confidence 678999999999999988776543 22222 1 789999999999975
No 321
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.49 E-value=1.6e-14 Score=148.54 Aligned_cols=83 Identities=23% Similarity=0.269 Sum_probs=47.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeecc---c-------------------ccC-CceeEEEEeCCC
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPE---D-------------------FYP-DRVPITIIDTPS 72 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~~~~~---~-------------------~~~-~~~~~~i~Dt~G 72 (573)
+||+|+|.||||||||+|+|++... +.++|++........ . +.. ..+++.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998772 233443221111111 0 011 146899999999
Q ss_pred Cccc----hhhhH---hhhccCCEEEEEEeCCCc
Q 008219 73 SVED----RGKLG---EELRRADAVVLTYACDRP 99 (573)
Q Consensus 73 ~~~~----~~~~~---~~~~~ad~il~v~D~~~~ 99 (573)
+... ..... .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8642 12222 457999999999999875
No 322
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.48 E-value=2.9e-13 Score=144.92 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-----------------CCCCCCCC-----CeeecccccCCceeEEEEeCCCCc
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFP-----------------ANVPPVLP-----PTRLPEDFYPDRVPITIIDTPSSV 74 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~-----------------~~~~~~~~-----~~~~~~~~~~~~~~~~i~Dt~G~~ 74 (573)
=+|+|+|+.++|||||..+|+...-. .++..... .......+.++++.++|+||||+.
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 35999999999999999999732210 01110000 011233455788999999999999
Q ss_pred cchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 008219 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (573)
Q Consensus 75 ~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~ 134 (573)
+|.......++-+|++|+|+|+...-..+... .++...+. ++|+++++||+|....
T Consensus 112 DF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~--v~~~a~~~--~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 112 DFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK--LMDVCRMR--ATPVMTFVNKMDREAL 167 (548)
T ss_dssp GCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCCEEEEEECTTSCCC
T ss_pred HHHHHHHHHHHhcCceEEEeecCCCcccccHH--HHHHHHHh--CCceEEEEecccchhc
Confidence 99999999999999999999988765444443 44555555 8999999999998765
No 323
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.48 E-value=1.7e-13 Score=133.55 Aligned_cols=138 Identities=12% Similarity=0.088 Sum_probs=82.3
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCC-CCCC-CcccEEEEEEEcCCCeEEEEEEecCChhHHHh--------hhc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDN-YTPT-TDERYAVNVVDQPGGTKKTVVLREIPEEAVAK--------LLS 495 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~--------~~~ 495 (573)
...++|+|+|.+|||||||+|+|++...... ..++ .+.......+... ...+.+|||+|...+.. +.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 4568999999999999999999999874333 3333 2322333333333 46789999999644211 100
Q ss_pred -cccccccccEEEEEEeCCChhhH-HHHHHHHHHHHhcCCCCCCCCcEEEEEe-CCCCcccccch-------hhHHHHHH
Q 008219 496 -NKDSLAACDIAVFVHDSSDESSW-KRATELLVEVASYGEDTGFEVPCLIVAA-KDDLDSFAMAI-------QDSTRVFT 565 (573)
Q Consensus 496 -~~~~~~~~d~vilv~D~~~~~s~-~~~~~~~~~~~~~~~~~~~~~p~ilv~n-K~Dl~~~~~~~-------~~~~~~~~ 565 (573)
...+++.+|++++|+|+++.... ..+..++..+..... +.|.++|+| |+|+....... .+.+++++
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~----~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA----MGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG----GGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh----hccEEEEEEcccccCCccHHHHHHhcchHHHHHHHH
Confidence 22367899999999999862221 222234444322211 346666666 99997533221 33445666
Q ss_pred HcCC
Q 008219 566 FLVM 569 (573)
Q Consensus 566 ~~~~ 569 (573)
.++.
T Consensus 174 ~~~~ 177 (260)
T 2xtp_A 174 ACGG 177 (260)
T ss_dssp HTTT
T ss_pred HhCC
Confidence 6553
No 324
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.47 E-value=6.8e-14 Score=136.51 Aligned_cols=121 Identities=14% Similarity=0.159 Sum_probs=80.6
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCC-cccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccccc----
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTT-DERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSL---- 500 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~---- 500 (573)
...++|+++|.+|||||||+|+|++........... +.......+.. +...+.+|||+|.+.+... ...++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~l~liDTpG~~~~~~~--~~~~~~~i~ 109 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVEAGYV--NHQALELIK 109 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE--TTEEEEEEECCCSEETTEE--CHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE--CCeeEEEEECCCCCCcccc--hHHHHHHHH
Confidence 356899999999999999999999988644433232 33333333333 3458899999998654433 22222
Q ss_pred -----ccccEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 501 -----AACDIAVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 501 -----~~~d~vilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
.++|++++|+|++... +... ..|+..+....... ...|+++|+||+|+..
T Consensus 110 ~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~-~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 110 GFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKE-IWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGG-GGGGEEEEEECTTCCC
T ss_pred HHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchh-hhcCEEEEEeCcccCC
Confidence 3789999999987644 4444 35666555432210 0359999999999953
No 325
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.47 E-value=4.7e-13 Score=133.00 Aligned_cols=107 Identities=19% Similarity=0.156 Sum_probs=76.6
Q ss_pred CceeEEEEe-CCC-----CccchhhhHhhhccCCEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 008219 61 DRVPITIID-TPS-----SVEDRGKLGEELRRADAVVLTYACDRPE-TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133 (573)
Q Consensus 61 ~~~~~~i~D-t~G-----~~~~~~~~~~~~~~ad~il~v~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~ 133 (573)
+.+.+.++| +.| ++++....+.++.++|++++|+|++++. ++..++. |+..+... ++|+++|+||+|+..
T Consensus 48 D~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~-~l~~~~~~--~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 48 DYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDN-MLVVYEYF--KVEPVIVFNKIDLLN 124 (302)
T ss_dssp CEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHH-HHHHHHHT--TCEEEEEECCGGGCC
T ss_pred eEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHH-HHHHHHhC--CCCEEEEEEcccCCC
Confidence 344555555 323 5566677778999999999999999986 8887764 88877764 899999999999976
Q ss_pred CcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhHHH
Q 008219 134 ENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
. ..+...+........++ .+++++||++|.|++++++
T Consensus 125 ~-~~v~~~~~~~~~~~~~g--~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 125 E-EEKKELERWISIYRDAG--YDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp H-HHHHHHHHHHHHHHHTT--CEEEECCTTTCTTHHHHHH
T ss_pred c-cccHHHHHHHHHHHHCC--CeEEEEECCCCCCHHHHHh
Confidence 5 11111122223333343 2899999999999998876
No 326
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.47 E-value=1.1e-13 Score=148.49 Aligned_cols=119 Identities=25% Similarity=0.248 Sum_probs=82.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCC----CCCCCCCCCeee-cccc--------------------c--C----C
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFP----ANVPPVLPPTRL-PEDF--------------------Y--P----D 61 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~----~~~~~~~~~~~~-~~~~--------------------~--~----~ 61 (573)
.....+|+|+|.+|||||||+|+|++..+. ...+++...+.+ .... . + .
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 346789999999999999999999998763 223332110000 0000 0 0 0
Q ss_pred c-----------eeEEEEeCCCCcc-----------chhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCC
Q 008219 62 R-----------VPITIIDTPSSVE-----------DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK 119 (573)
Q Consensus 62 ~-----------~~~~i~Dt~G~~~-----------~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~ 119 (573)
+ ..+.||||||+.. +......++..+|++|+|+|+++........ .|+..++.. +
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~~--~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS-EAIGALRGH--E 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH-HHHHHTTTC--G
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH-HHHHHHHhc--C
Confidence 0 3689999999875 3345567889999999999998854444444 377777654 6
Q ss_pred CcEEEEEeCCCCCCC
Q 008219 120 VPVIVVGCKLDLRDE 134 (573)
Q Consensus 120 ~piilv~NK~D~~~~ 134 (573)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 899999999999865
No 327
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.47 E-value=2.5e-13 Score=138.58 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=96.7
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhh-------hcccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL-------LSNKD 498 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~-------~~~~~ 498 (573)
...++|+++|.+|||||||+|+|++........+..+.......+... ...+.+|||+|....... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 345799999999999999999999987433222333333443434333 467889999996331100 00112
Q ss_pred ccccccEEEEEEeCCChh--hHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccC
Q 008219 499 SLAACDIAVFVHDSSDES--SWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 572 (573)
Q Consensus 499 ~~~~~d~vilv~D~~~~~--s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
....+|++++|+|+++.. +++....|+..+..... +.|+++|+||+|+..... .++..++++..+++++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~----~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 313 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK----DLPFLVVINKIDVADEEN-IKRLEKFVKEKGLNPI 313 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT----TSCEEEEECCTTTCCHHH-HHHHHHHHHHTTCCCE
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC----CCCEEEEEECcccCChHH-HHHHHHHHHhcCCCeE
Confidence 345699999999999876 78888889888876543 689999999999976432 2445666666776654
No 328
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.45 E-value=7.6e-14 Score=138.66 Aligned_cols=160 Identities=17% Similarity=0.186 Sum_probs=81.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcC-CCCCCC--------CCCCCCeeecc--cccCCceeEEEEeCCCC-------cc
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAAD-TFPANV--------PPVLPPTRLPE--DFYPDRVPITIIDTPSS-------VE 75 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~-~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~i~Dt~G~-------~~ 75 (573)
.-.++|+|+|++|||||||+++|.+. .+.... .++........ ........+.+|||+|+ +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34689999999999999999998875 332221 11111111111 11233467999999998 44
Q ss_pred chhhhH-------hhhcc-------------CCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 008219 76 DRGKLG-------EELRR-------------ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN 135 (573)
Q Consensus 76 ~~~~~~-------~~~~~-------------ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~ 135 (573)
+..... .+++. +++++++.+.+. .+++.....++..+ ..+.|+++|+||+|+...
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l---~~~~~iilV~~K~Dl~~~- 170 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTL- 170 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH---TTTSCEEEEECCGGGSCH-
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH---HhcCCEEEEEEeCCCCCH-
Confidence 433332 33332 344555544332 24555543244433 346899999999999764
Q ss_pred cccc-HHHHHHHHHHHhcccCeEEEecCCCCCCchhHHHHHHHHHhC
Q 008219 136 QQVS-LEQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVLH 181 (573)
Q Consensus 136 ~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 181 (573)
++.. ..+.....+...+ + +++++||++| |++++|..+.+.+..
T Consensus 171 ~e~~~~~~~~~~~~~~~~-~-~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHN-I-KIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHHHHHHTT-C-CCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcC-C-eEEecCCccc-cccHHHHHHHHHhhc
Confidence 2221 1233344555554 2 8999999999 999999999887754
No 329
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.44 E-value=1.1e-13 Score=143.47 Aligned_cols=123 Identities=18% Similarity=0.140 Sum_probs=86.2
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCccc-----------EEE----EEEEc---CCCeEEEEEEecCC
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDER-----------YAV----NVVDQ---PGGTKKTVVLREIP 486 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~-----------~~~----~~~~~---~~~~~~~~i~dt~G 486 (573)
.++.++|+++|.+|+|||||+++|++............+. +.. ..... ......+.+|||+|
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 3456899999999999999999999865432110000000 000 00000 01126788999999
Q ss_pred hhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 487 EEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 487 ~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
++.|... ....+..+|++++|+|++++.++.....++..+.... ..|+++|+||+|+....
T Consensus 85 h~~~~~~--~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~-----~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 85 HEVLMAT--MLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-----VKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp CGGGHHH--HHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGGSCHH
T ss_pred cHHHHHH--HHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC-----CCCEEEEEECccccchH
Confidence 9988877 6677899999999999999877777777776665543 45899999999997654
No 330
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.44 E-value=3.3e-13 Score=132.55 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=81.7
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCC--------CCCCcccEEEEEEEcCCCeEEEEEEecCChh-------HHH
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY--------TPTTDERYAVNVVDQPGGTKKTVVLREIPEE-------AVA 491 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~-------~~~ 491 (573)
..++|+|+|.+|||||||+|+|++....... .++.+.......+...+....+.+|||+|.. .+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 4589999999999999999999886654433 2334444443444444444589999999951 111
Q ss_pred hh-----------hc-------cccccccccEEEEEEeCCChhhHHHHHH-HHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 492 KL-----------LS-------NKDSLAACDIAVFVHDSSDESSWKRATE-LLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 492 ~~-----------~~-------~~~~~~~~d~vilv~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
.+ +. ....-.++|+++++++.+... +...+. ++..+.. ++|+++|+||+|+..
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~-------~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE-------KVNIIPLIAKADTLT 158 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT-------TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc-------cCCEEEEEeccCCCC
Confidence 11 10 011113478999999876532 333333 3344432 689999999999875
Q ss_pred cccc---hhhHHHHHHHcCCccC
Q 008219 553 FAMA---IQDSTRVFTFLVMVLY 572 (573)
Q Consensus 553 ~~~~---~~~~~~~~~~~~~~~~ 572 (573)
.... .....+..+..++++|
T Consensus 159 ~~e~~~~~~~i~~~l~~~~i~v~ 181 (274)
T 3t5d_A 159 PEECQQFKKQIMKEIQEHKIKIY 181 (274)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEE
Confidence 4322 2344555566677765
No 331
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.44 E-value=5.1e-13 Score=139.80 Aligned_cols=135 Identities=11% Similarity=0.074 Sum_probs=88.6
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCC-------------------------------CCCCcccEEEEEEEcC
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-------------------------------TPTTDERYAVNVVDQP 473 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 473 (573)
.+..++|+++|.+|+|||||+++|++....... .+..|.+.....+..
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~- 92 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET- 92 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-
Confidence 456789999999999999999999654221111 111222233333333
Q ss_pred CCeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChhh---HH---HHHHHHHHHHhcCCCCCCCCc-EEEEEe
Q 008219 474 GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESS---WK---RATELLVEVASYGEDTGFEVP-CLIVAA 546 (573)
Q Consensus 474 ~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~p-~ilv~n 546 (573)
....+.+|||+|++.|... ....++.+|++++|+|++++.. |+ .....+..+... ++| +|+|+|
T Consensus 93 -~~~~~~iiDTPGh~~f~~~--~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~------~v~~iIvviN 163 (439)
T 3j2k_7 93 -EKKHFTILDAPGHKSFVPN--MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA------GVKHLIVLIN 163 (439)
T ss_pred -CCeEEEEEECCChHHHHHH--HHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc------CCCeEEEEee
Confidence 3468899999999999877 6677899999999999998632 22 222222222222 677 999999
Q ss_pred CCCCcccc-------cchhhHHHHHHHcCC
Q 008219 547 KDDLDSFA-------MAIQDSTRVFTFLVM 569 (573)
Q Consensus 547 K~Dl~~~~-------~~~~~~~~~~~~~~~ 569 (573)
|+|+.... ...++..++++++++
T Consensus 164 K~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~ 193 (439)
T 3j2k_7 164 KMDDPTVNWSNERYEECKEKLVPFLKKVGF 193 (439)
T ss_pred cCCCcccchHHHHHHHHHHHHHHHHHHhcc
Confidence 99995321 224455666666664
No 332
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.44 E-value=5.2e-14 Score=143.44 Aligned_cols=106 Identities=13% Similarity=0.068 Sum_probs=72.0
Q ss_pred CceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccH
Q 008219 61 DRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSL 140 (573)
Q Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~ 140 (573)
.++.+.||||||.... ....+..+|++++|+|.+.......+. ..-..+|+++|+||+|+... ...
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~--------~~~~~~p~ivVlNK~Dl~~~---~~~ 235 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK--------KGVLELADIVVVNKADGEHH---KEA 235 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC--------TTSGGGCSEEEEECCCGGGH---HHH
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH--------HhHhhcCCEEEEECCCCcCh---hHH
Confidence 5688999999996432 334569999999999987665443322 11124699999999998653 111
Q ss_pred HHHHHHHHHH---hc-----ccCeEEEecCCCCCCchhHHHHHHHHHh
Q 008219 141 EQVMMPIMQQ---FR-----EIETCIECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 141 ~~~~~~~~~~---~~-----~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
......+... +. ...++++|||++|.|++++++.+.+.+.
T Consensus 236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 2222223222 21 1237999999999999999999988653
No 333
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.44 E-value=5e-14 Score=147.56 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=76.0
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEE-EEEEEcCCCeEEEEEEecCChhHHHhhh------ccccc
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYA-VNVVDQPGGTKKTVVLREIPEEAVAKLL------SNKDS 499 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~dt~G~~~~~~~~------~~~~~ 499 (573)
..+||+++|.+|||||||+|+|++.++..+...+++++.. ...+..+ +..+.+|||+|.+.+.... +...+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG--GIPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET--TEEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC--CEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4589999999999999999999998766555444444332 2334444 3678899999976543321 13457
Q ss_pred cccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 500 LAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 500 ~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
++.+|++++|+|++++.++.. ..++..+. +.|+++|+||+|+...
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~--------~~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK--------HRPLILVMNKIDLVEK 345 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT--------TSCEEEEEECTTSSCG
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc--------CCcEEEEEECCCCCcc
Confidence 789999999999999866544 34444442 5799999999999754
No 334
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.43 E-value=2.7e-13 Score=137.50 Aligned_cols=152 Identities=17% Similarity=0.093 Sum_probs=89.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcC------C--CCCCCCCCC----------------------------------CC
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAAD------T--FPANVPPVL----------------------------------PP 51 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~------~--~~~~~~~~~----------------------------------~~ 51 (573)
.....|+|+|.||||||||+|+|++. + .....+++. ++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 34789999999999999999999862 1 000000000 01
Q ss_pred eee----cccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 008219 52 TRL----PEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGC 127 (573)
Q Consensus 52 ~~~----~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~N 127 (573)
++. ...+...++.+.|+||+|..... ......+|++++|+|++.......+. ..+ ...|.++|+|
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~----~~i----l~~~~ivVlN 220 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK----RGI----IEMADLVAVT 220 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC--------------------CCSCSEEEEC
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH----HHH----HhcCCEEEEe
Confidence 110 00112356789999999964322 34567899999999987654322221 111 1568899999
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhc--------ccCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 128 KLDLRDENQQVSLEQVMMPIMQQFR--------EIETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 128 K~D~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
|+|+... .........+...+. ...+++.+||++|.|++++++.+.+.+
T Consensus 221 K~Dl~~~---~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 221 KSDGDLI---VPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CCSGGGH---HHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eecCCCc---hhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 9998643 111111122222111 113789999999999999999998764
No 335
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.43 E-value=2.3e-13 Score=133.37 Aligned_cols=125 Identities=11% Similarity=0.049 Sum_probs=80.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhh----c-ccc--
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL----S-NKD-- 498 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~----~-~~~-- 498 (573)
...++|+++|.+|||||||+|+|++..+........++..... .....+...+.+|||+|.+.+..+. . ...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVM-VSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEE-EEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEE-EEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 3568999999999999999999999886544433333322222 2222245689999999975433210 0 111
Q ss_pred ccccccEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 499 SLAACDIAVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 499 ~~~~~d~vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
..+.+|++++|+|++.. ++...+ .|+..+....... ..+|+++|+||+|+...
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~-~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKG-IWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECCSCCCG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcc-cccCEEEEEECcccCCc
Confidence 23579999999998653 354443 5666665432110 02799999999999653
No 336
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.43 E-value=2e-13 Score=140.68 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=79.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCC----CCCee---eccccc--CCceeEEEEeCCCCccchh------
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPV----LPPTR---LPEDFY--PDRVPITIIDTPSSVEDRG------ 78 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~-~~~~----~~~~~---~~~~~~--~~~~~~~i~Dt~G~~~~~~------ 78 (573)
-.++|+|+|++|||||||+|+|++..+... ..+. ..+.. +...+. .....+.+|||+|+.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 367999999999999999999998765321 1110 01111 122222 2234689999999865411
Q ss_pred -h------------------hHhhhccCCEEEEEEeCCCc-ccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccc
Q 008219 79 -K------------------LGEELRRADAVVLTYACDRP-ETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQV 138 (573)
Q Consensus 79 -~------------------~~~~~~~ad~il~v~D~~~~-~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~ 138 (573)
. ...++.++++.+++|+.+.- .++...+..|+..+.. ++|+|+|+||+|+... +++
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~---~v~iIlVinK~Dll~~-~ev 185 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTP-EEC 185 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT---TSEEEEEEESTTSSCH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc---cCcEEEEEEcccCccH-HHH
Confidence 1 11234556655555554442 4566665457777753 7999999999999765 222
Q ss_pred cH-HHHHHHHHHHhcccCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 139 SL-EQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 139 ~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
.. .+.....+...+ + +++++||+++.++.+++..+...+
T Consensus 186 ~~~k~~i~~~~~~~~-i-~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 186 QQFKKQIMKEIQEHK-I-KIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHT-C-CCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHcC-C-eEEeCCCCCCcCHHHHHHHHHhhC
Confidence 21 122333334443 2 789999999999999887776543
No 337
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.42 E-value=6.5e-14 Score=142.72 Aligned_cols=138 Identities=15% Similarity=0.100 Sum_probs=74.6
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCC-CC--------CCCcccEEEEEEEcCCCeEEEEEEecCCh-------hH
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDN-YT--------PTTDERYAVNVVDQPGGTKKTVVLREIPE-------EA 489 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~i~dt~G~-------~~ 489 (573)
...++|+|+|++|||||||+++|.+...... +. ++.+.......+...+....+.+|||+|. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 3458999999999999999999877543222 11 12222211112222323447889999998 44
Q ss_pred HHhhhccc-------cccccc-----------cEEEEEEeCCC-hhhHHHHHH-HHHHHHhcCCCCCCCCcEEEEEeCCC
Q 008219 490 VAKLLSNK-------DSLAAC-----------DIAVFVHDSSD-ESSWKRATE-LLVEVASYGEDTGFEVPCLIVAAKDD 549 (573)
Q Consensus 490 ~~~~~~~~-------~~~~~~-----------d~vilv~D~~~-~~s~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D 549 (573)
+..+ .. .+++.+ ++.++||++++ ..++..++. ++..+ . . ++|+|+|+||+|
T Consensus 115 ~~~i--~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~--~----~~piIlV~NK~D 185 (361)
T 2qag_A 115 FKTI--ISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-H--N----KVNIVPVIAKAD 185 (361)
T ss_dssp -CCT--HHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-C--S-----SCEEEEEECCS
T ss_pred HHHH--HHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-c--c----CCCEEEEEECCC
Confidence 4443 22 333332 22234555544 455666663 33433 1 1 799999999999
Q ss_pred Ccccccc---hhhHHHHHHHcCCccC
Q 008219 550 LDSFAMA---IQDSTRVFTFLVMVLY 572 (573)
Q Consensus 550 l~~~~~~---~~~~~~~~~~~~~~~~ 572 (573)
+...+.. ..++.++++.+++++|
T Consensus 186 l~~~~ev~~~k~~i~~~~~~~~i~~~ 211 (361)
T 2qag_A 186 TLTLKERERLKKRILDEIEEHNIKIY 211 (361)
T ss_dssp SSCHHHHHHHHHHHHHHTTCC-CCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEE
Confidence 9765432 2577788888888876
No 338
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.42 E-value=1.1e-12 Score=133.31 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=78.0
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCCh---------hHHHhhhcccccc
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE---------EAVAKLLSNKDSL 500 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~---------~~~~~~~~~~~~~ 500 (573)
.|+++|.+|||||||+|+|.+........+..|.+.....+.+++ ..+.+|||+|. +.|... ...+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t---l~~~ 255 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT---LSEA 255 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH---HHGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH---HHHH
Confidence 499999999999999999999876333333333334445566663 57889999995 334443 2357
Q ss_pred ccccEEEEEEeCCChh--hHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 501 AACDIAVFVHDSSDES--SWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 501 ~~~d~vilv~D~~~~~--s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
..+|++++|+|++++. ++.....|...+...... +.|+++|+||+|+.+.
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~---~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVS---GKPILVTLNKIDKING 307 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC---SCCEEEEEECGGGCCS
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC---CCCEEEEEECCCCCCc
Confidence 8999999999999876 555555554444433221 7899999999999754
No 339
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.40 E-value=3.2e-13 Score=143.36 Aligned_cols=120 Identities=15% Similarity=0.042 Sum_probs=77.9
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCC-------------------------------CCCCCCcccEEEEEEEcC
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSD-------------------------------NYTPTTDERYAVNVVDQP 473 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 473 (573)
.+..+||+++|.+|+|||||+++|++..... ......+.......+.
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-- 107 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-- 107 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE--
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe--
Confidence 4567999999999999999999997651110 0001112222222232
Q ss_pred CCeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChhhHHH-----HHHHHHHHHhcCCCCCCCCcEEEEEeCC
Q 008219 474 GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKR-----ATELLVEVASYGEDTGFEVPCLIVAAKD 548 (573)
Q Consensus 474 ~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~-----~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 548 (573)
.....+.||||+|++.|... ...+++.+|++++|+|++++.++.. .......+..... ..|+|+|+||+
T Consensus 108 ~~~~~~~iiDTPG~~~f~~~--~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~----~~~iIvviNK~ 181 (483)
T 3p26_A 108 THRANFTIVDAPGHRDFVPN--AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG----IHNLIIAMNKM 181 (483)
T ss_dssp CSSCEEEEECCCCCGGGHHH--HHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT----CCCEEEEEECG
T ss_pred cCCceEEEEECCCcHHHHHH--HHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC----CCcEEEEEECc
Confidence 24568899999999998877 6778899999999999999754432 2222222222221 35699999999
Q ss_pred CCcc
Q 008219 549 DLDS 552 (573)
Q Consensus 549 Dl~~ 552 (573)
|+..
T Consensus 182 Dl~~ 185 (483)
T 3p26_A 182 DNVD 185 (483)
T ss_dssp GGGT
T ss_pred Cccc
Confidence 9976
No 340
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.38 E-value=4.4e-13 Score=127.14 Aligned_cols=153 Identities=11% Similarity=0.027 Sum_probs=92.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCC-------CCCCCC---------CCeeeccc------c----------cCCc
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPA-------NVPPVL---------PPTRLPED------F----------YPDR 62 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~-------~~~~~~---------~~~~~~~~------~----------~~~~ 62 (573)
+..+|+|+|.+|||||||+++|+...... ..++.. +....... + ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 35689999999999999999998652111 111100 00000000 0 2245
Q ss_pred eeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHH
Q 008219 63 VPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQ 142 (573)
Q Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~ 142 (573)
..+.+|||+|+..... .+...++.+++|+|++.... .... +.. .. +.|+++|+||+|+... .....++
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~-~~~---~~--~~~~iiv~NK~Dl~~~-~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEK-HPE---IF--RVADLIVINKVALAEA-VGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHH-CHH---HH--HTCSEEEEECGGGHHH-HTCCHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhh-hhh---hh--hcCCEEEEecccCCcc-hhhHHHH
Confidence 6789999999521111 11135789999999876532 1111 111 22 5799999999998642 1122333
Q ss_pred HHHHHHHHhcccCeEEEecCCCCCCchhHHHHHHHHHh
Q 008219 143 VMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
... ....++...+++++||++|.|++++++.+.+.+.
T Consensus 177 ~~~-~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 177 MKA-DAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHH-HHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred HHH-HHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 322 2333332248999999999999999999988653
No 341
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.38 E-value=1.2e-12 Score=143.16 Aligned_cols=154 Identities=17% Similarity=0.120 Sum_probs=99.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee----------------------------------------
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL---------------------------------------- 54 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~---------------------------------------- 54 (573)
.-.+|+|+|.+++|||||+|+|++..+.+...+. .|+.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~--~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI--VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC--SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc--ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 4569999999999999999999998764332211 1110
Q ss_pred -------------cccc-cCCceeEEEEeCCCCccch-------------hhhHhhh-ccCCEEEEEEeCCCcccHHHHH
Q 008219 55 -------------PEDF-YPDRVPITIIDTPSSVEDR-------------GKLGEEL-RRADAVVLTYACDRPETLDELS 106 (573)
Q Consensus 55 -------------~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~-~~ad~il~v~D~~~~~s~~~~~ 106 (573)
...+ ......+.|+||||..... .....++ ..+|++++|+|++....-.+..
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0000 1223458899999976511 1223344 6899999999998764444432
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhc----ccCeEEEecCCCCCCchhHHHHHHHH
Q 008219 107 TFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR----EIETCIECSALKQIQVPEVFYYAQKA 178 (573)
Q Consensus 107 ~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~i~~~ 178 (573)
.++..+... +.|+++|+||+|+..... .. ... ...... ...+++.+||++|.|+++|++.+.+.
T Consensus 208 -~ll~~L~~~--g~pvIlVlNKiDlv~~~~-~~-~~i---l~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 -KIAKEVDPQ--GQRTIGVITKLDLMDEGT-DA-RDV---LENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp -HHHHHHCTT--CSSEEEEEECTTSSCTTC-CS-HHH---HTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred -HHHHHHHhc--CCCEEEEEeCcccCCcch-hh-HHH---HHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 256666554 789999999999986521 11 111 111110 11267889999999999999998863
No 342
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.38 E-value=8.4e-13 Score=148.55 Aligned_cols=116 Identities=17% Similarity=0.149 Sum_probs=84.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCC--CCCCC---------------CC-CCCCeeecccc--------------cCC
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADT--FPANV---------------PP-VLPPTRLPEDF--------------YPD 61 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~--~~~~~---------------~~-~~~~~~~~~~~--------------~~~ 61 (573)
.+..+|+|+|++|||||||+++|+... ..... .+ +.........+ ...
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 346789999999999999999998742 11100 00 00011111112 234
Q ss_pred ceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 008219 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133 (573)
Q Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~ 133 (573)
++.++||||||+.+|......+++.+|++|+|+|+++..+++... .|.... .. ++|+++|+||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~-~~--~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQAL-GE--RIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHH-HT--TCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH-Hc--CCCeEEEEECCCcch
Confidence 788999999999999999999999999999999999998887765 354433 33 799999999999863
No 343
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.37 E-value=1.2e-12 Score=135.43 Aligned_cols=134 Identities=12% Similarity=0.033 Sum_probs=88.7
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCC-------CCCC--CC-----CCCcccEEEEEEEcCCCeEEEEEEecCChhHHHh
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRP-------FSDN--YT-----PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK 492 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~-------~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~ 492 (573)
..+||+++|.+++|||||+++|++.. +... .+ ...+.......+.+..+...+.+|||+|++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 35899999999999999999998731 1100 00 0111111112233333456889999999999877
Q ss_pred hhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCcccc----cchhhHHHHHHHc
Q 008219 493 LLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFA----MAIQDSTRVFTFL 567 (573)
Q Consensus 493 ~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~----~~~~~~~~~~~~~ 567 (573)
. ...+++.+|++++|+|++++...+..+. +..+... ++| +++|+||+|+..+. ...++.+++++++
T Consensus 82 ~--~~~~~~~aD~~ilVvda~~g~~~qt~e~-l~~~~~~------~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 152 (397)
T 1d2e_A 82 N--MITGTAPLDGCILVVAANDGPMPQTREH-LLLARQI------GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEF 152 (397)
T ss_dssp H--HHHTSSCCSEEEEEEETTTCSCHHHHHH-HHHHHHT------TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred H--HHhhHhhCCEEEEEEECCCCCCHHHHHH-HHHHHHc------CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHc
Confidence 6 5677899999999999998654433333 3333332 788 68999999997422 1235677788777
Q ss_pred CC
Q 008219 568 VM 569 (573)
Q Consensus 568 ~~ 569 (573)
++
T Consensus 153 ~~ 154 (397)
T 1d2e_A 153 GY 154 (397)
T ss_dssp TS
T ss_pred CC
Confidence 64
No 344
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.37 E-value=5.2e-13 Score=146.03 Aligned_cols=113 Identities=18% Similarity=0.179 Sum_probs=82.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------CCCCC-----------eeecccccCCceeEEEEeCCCCccchhh
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADTFPANVP-------PVLPP-----------TRLPEDFYPDRVPITIIDTPSSVEDRGK 79 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~~~~~~~-------~~~~~-----------~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 79 (573)
+|+|+|+.++|||||..+|+...-..... .+.+. ......+.++++.++|+||||+.+|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999997432111111 00000 0123345588899999999999999999
Q ss_pred hHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 008219 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (573)
Q Consensus 80 ~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~ 134 (573)
....++-+|++|+|+|+...-..+.. ..++.+... ++|.++++||+|....
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT~--~v~~~a~~~--~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQTR--ILFHALRKM--GIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHHH--HHHHHHHHH--TCSCEECCEECCSSSC
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEeccccccC
Confidence 99999999999999998876443333 244555555 7999999999998764
No 345
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.37 E-value=1.2e-12 Score=132.11 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=88.2
Q ss_pred CceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCC----------CcccHHHHHHHHHHHHHhc--CCCCcEEEEEeC
Q 008219 61 DRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD----------RPETLDELSTFWLPELRRL--EVKVPVIVVGCK 128 (573)
Q Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~----------~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK 128 (573)
..+.+.||||+|++.+...+..++++++++|+|||++ +..++++... |+..+... ..+.|++||+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence 5689999999999999999999999999999999998 7788888875 66666542 258999999999
Q ss_pred CCCCCCcc-cc-------------------cHHHHHHHHHHHhc-------------ccCeEEEecCCCCCCchhHHHHH
Q 008219 129 LDLRDENQ-QV-------------------SLEQVMMPIMQQFR-------------EIETCIECSALKQIQVPEVFYYA 175 (573)
Q Consensus 129 ~D~~~~~~-~~-------------------~~~~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~i 175 (573)
+|+..+.. .+ ..++....+...|. ....+++|||+++.||+++|+.+
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 99853200 01 12333333344331 11246899999999999999999
Q ss_pred HHHHh
Q 008219 176 QKAVL 180 (573)
Q Consensus 176 ~~~~~ 180 (573)
.+.+.
T Consensus 340 ~~~I~ 344 (354)
T 2xtz_A 340 DETLR 344 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 346
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.36 E-value=1.6e-12 Score=139.92 Aligned_cols=134 Identities=15% Similarity=0.086 Sum_probs=88.4
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCC-------CC------CCCcccEE--EEEEEc---CCCeEEEEEEecCChh
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDN-------YT------PTTDERYA--VNVVDQ---PGGTKKTVVLREIPEE 488 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-------~~------~~~~~~~~--~~~~~~---~~~~~~~~i~dt~G~~ 488 (573)
+..+|+|+|..++|||||+++|+...-... .. ...+.... ...+.+ ++....+.+|||+|+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 457999999999999999999986321100 00 01111111 112222 3345788999999999
Q ss_pred HHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcC
Q 008219 489 AVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 568 (573)
Q Consensus 489 ~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 568 (573)
.|... ...+++.+|++++|+|++++.+++....|..... . ++|+++|+||+|+...+ .....+++++.++
T Consensus 83 dF~~e--v~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-~------~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg 152 (599)
T 3cb4_D 83 DFSYE--VSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-M------DLEVVPVLNKIDLPAAD-PERVAEEIEDIVG 152 (599)
T ss_dssp GGHHH--HHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-T------TCEEEEEEECTTSTTCC-HHHHHHHHHHHTC
T ss_pred HHHHH--HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-C------CCCEEEeeeccCccccc-HHHHHHHHHHHhC
Confidence 88877 6778899999999999999888877777765543 2 79999999999997643 2334556666666
Q ss_pred Cc
Q 008219 569 MV 570 (573)
Q Consensus 569 ~~ 570 (573)
+.
T Consensus 153 ~~ 154 (599)
T 3cb4_D 153 ID 154 (599)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 347
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.36 E-value=5.9e-13 Score=138.27 Aligned_cols=133 Identities=13% Similarity=0.045 Sum_probs=90.2
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCC--------CCCCC--C-------CCCCcccEEEEEEEcCCCeEEEEEEecCCh
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGR--------PFSDN--Y-------TPTTDERYAVNVVDQPGGTKKTVVLREIPE 487 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~--------~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~ 487 (573)
.+..++|+++|.+|+|||||+++|++. .+... . ....+... ..+.+......+.+|||+|+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEECSSCEEEEEECCCS
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEeccCCeEEEEEECCCh
Confidence 345689999999999999999999873 11110 0 01112222 22333334568899999999
Q ss_pred hHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCccccc----chhhHHH
Q 008219 488 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFAM----AIQDSTR 562 (573)
Q Consensus 488 ~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~----~~~~~~~ 562 (573)
+.|... ...+++.+|++++|+|++++... ....++..+... ++| +++|+||+|+..+.. ..++..+
T Consensus 86 ~~f~~~--~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~ 156 (405)
T 2c78_A 86 ADYIKN--MITGAAQMDGAILVVSAADGPMP-QTREHILLARQV------GVPYIVVFMNKVDMVDDPELLDLVEMEVRD 156 (405)
T ss_dssp GGGHHH--HHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT------TCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc------CCCEEEEEEECccccCcHHHHHHHHHHHHH
Confidence 988776 66778999999999999987543 334555544443 788 889999999974221 2345667
Q ss_pred HHHHcC
Q 008219 563 VFTFLV 568 (573)
Q Consensus 563 ~~~~~~ 568 (573)
++++++
T Consensus 157 ~l~~~~ 162 (405)
T 2c78_A 157 LLNQYE 162 (405)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 777766
No 348
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.36 E-value=1.4e-12 Score=129.86 Aligned_cols=119 Identities=19% Similarity=0.170 Sum_probs=77.2
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCC-----CCCCC----------------------cccEE-------------
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDN-----YTPTT----------------------DERYA------------- 466 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-----~~~~~----------------------~~~~~------------- 466 (573)
..++|+|+|.+|||||||+|+|++..+... ...++ ++...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 456999999999999999999999887421 11111 11000
Q ss_pred ----------EE-EEEcCCCeEEEEEEecCChh-------------HHHhhhccccccccccEEE-EEEeCCChhhHHHH
Q 008219 467 ----------VN-VVDQPGGTKKTVVLREIPEE-------------AVAKLLSNKDSLAACDIAV-FVHDSSDESSWKRA 521 (573)
Q Consensus 467 ----------~~-~~~~~~~~~~~~i~dt~G~~-------------~~~~~~~~~~~~~~~d~vi-lv~D~~~~~s~~~~ 521 (573)
+. .+... ....+.+|||+|.. .+..+ ...+++.++.++ +|+|+++..+....
T Consensus 105 g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp SSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHH--HHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred ccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHH--HHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 00 00111 13578899999952 45555 667788888776 69999886444333
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 522 TELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
..++..+... +.|+++|+||+|+....
T Consensus 182 ~~~~~~~~~~------~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 182 LKIAKEVDPQ------GQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHHHCTT------CSSEEEEEECGGGSCTT
T ss_pred HHHHHHhCCC------CCeEEEEEEccccCCCC
Confidence 3344444321 79999999999997543
No 349
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.36 E-value=2.9e-14 Score=151.23 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=87.7
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
..+|+++|.+|+|||||+++|.+..+.....++.|.+.....+..+ +...+.+|||+|++.|..+ ...+++.+|+++
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~--~~~~~~~aD~vI 80 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAM--RARGTQVTDIVI 80 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTS--BBSSSBSBSSCE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHH--HHHHHccCCEEE
Confidence 3589999999999999999999877655555555544443444443 3347889999999999988 788899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
+|+|++++...+....+ ..+... ++|+++|+||+|+...
T Consensus 81 LVVDa~dg~~~qt~e~l-~~~~~~------~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 81 LVVAADDGVMKQTVESI-QHAKDA------HVPIVLAINKCDKAEA 119 (537)
T ss_dssp EECBSSSCCCHHHHHHH-HHHHTT------TCCEEECCBSGGGTTT
T ss_pred EEEECCCCccHHHHHHH-HHHHHc------CCcEEEEEeccccccc
Confidence 99999997655444433 333322 7999999999999753
No 350
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.36 E-value=2e-12 Score=135.43 Aligned_cols=132 Identities=14% Similarity=0.161 Sum_probs=86.9
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCC------------CCC---------------------CcccEEEEEEEc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY------------TPT---------------------TDERYAVNVVDQ 472 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~------------~~~---------------------~~~~~~~~~~~~ 472 (573)
+..+||+++|.+|+|||||+++|++....... ..+ .+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 45689999999999999999999865421100 001 111111122222
Q ss_pred CCCeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCC-cEEEEEeCCCCc
Q 008219 473 PGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEV-PCLIVAAKDDLD 551 (573)
Q Consensus 473 ~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~ 551 (573)
....+.+|||+|++.|... ...++..+|++++|+|++++... ....++..+... +. |+++|+||+|+.
T Consensus 102 --~~~~~~iiDtpGh~~f~~~--~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~------~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 102 --AKRKFIIADTPGHEQYTRN--MATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL------GIKHIVVAINKMDLN 170 (434)
T ss_dssp --SSEEEEEEECCCSGGGHHH--HHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT------TCCEEEEEEECTTTT
T ss_pred --CCceEEEEECCChHHHHHH--HHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc------CCCeEEEEEEcCcCC
Confidence 4567899999999988776 55678999999999999986432 233344333332 44 699999999997
Q ss_pred ccc-----cchhhHHHHHHHcC
Q 008219 552 SFA-----MAIQDSTRVFTFLV 568 (573)
Q Consensus 552 ~~~-----~~~~~~~~~~~~~~ 568 (573)
... ...++..+++++++
T Consensus 171 ~~~~~~~~~i~~~~~~~~~~~g 192 (434)
T 1zun_B 171 GFDERVFESIKADYLKFAEGIA 192 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHHHHHHHHhC
Confidence 521 12456667777776
No 351
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.35 E-value=1.1e-12 Score=137.36 Aligned_cols=132 Identities=11% Similarity=0.131 Sum_probs=87.6
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCC--CCCCCC-----------------------------CCCCcccEEEEEEEcCC
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGR--PFSDNY-----------------------------TPTTDERYAVNVVDQPG 474 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 474 (573)
+..++|+++|.+|+|||||+++|++. .+.... ....+.......+..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-- 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-- 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC--
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec--
Confidence 45689999999999999999999864 221100 011222222222332
Q ss_pred CeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHH-------HHHHHhcCCCCCCCC-cEEEEEe
Q 008219 475 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATEL-------LVEVASYGEDTGFEV-PCLIVAA 546 (573)
Q Consensus 475 ~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~-------~~~~~~~~~~~~~~~-p~ilv~n 546 (573)
....+.+|||+|++.|... ...+++.+|++++|+|+++ .+|+....| +..+... ++ |+++|+|
T Consensus 82 ~~~~~~iiDtpG~~~f~~~--~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~------~~~~iivviN 152 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKN--MITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM------GLDQLIVAVN 152 (435)
T ss_dssp SSCEEEECCCSSSTTHHHH--HHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT------TCTTCEEEEE
T ss_pred CCeEEEEEECCCcHHHHHH--HHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc------CCCeEEEEEE
Confidence 4467899999999999877 6678899999999999998 677754332 2222222 44 6899999
Q ss_pred CCCCccc-------ccchhhHHHHHHHcC
Q 008219 547 KDDLDSF-------AMAIQDSTRVFTFLV 568 (573)
Q Consensus 547 K~Dl~~~-------~~~~~~~~~~~~~~~ 568 (573)
|+|+... ....++.+++++.++
T Consensus 153 K~Dl~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (435)
T 1jny_A 153 KMDLTEPPYDEKRYKEIVDQVSKFMRSYG 181 (435)
T ss_dssp CGGGSSSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 9999762 122566777777776
No 352
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.35 E-value=1.8e-12 Score=130.89 Aligned_cols=121 Identities=16% Similarity=0.104 Sum_probs=91.9
Q ss_pred cCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCC----------cccHHHHHHHHHHHHHhc--CCCCcEEEEE
Q 008219 59 YPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDR----------PETLDELSTFWLPELRRL--EVKVPVIVVG 126 (573)
Q Consensus 59 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~ 126 (573)
..+++.+.+|||+|++.+...+..++++++++|||||+++ ..++.+... |+..+... ..+.|+|||+
T Consensus 189 ~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~ 267 (353)
T 1cip_A 189 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFL 267 (353)
T ss_dssp EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEE
T ss_pred eeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEE
Confidence 3457899999999999999999999999999999999999 456777765 66666542 2589999999
Q ss_pred eCCCCCCCc--------------ccccHHHHHHHHHHHh--------cccCeEEEecCCCCCCchhHHHHHHHHHh
Q 008219 127 CKLDLRDEN--------------QQVSLEQVMMPIMQQF--------REIETCIECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 127 NK~D~~~~~--------------~~~~~~~~~~~~~~~~--------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
||+|+.... ..+..++....+...| .....+++|||+++.||.++|+++.+.+.
T Consensus 268 NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 268 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp ECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred ECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 999985320 0134444444444322 11227899999999999999999988764
No 353
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.35 E-value=2.6e-12 Score=125.24 Aligned_cols=164 Identities=16% Similarity=0.070 Sum_probs=96.3
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHh-----cCCC--CCCCCCCCC-------------Ceeecc--c------------
Q 008219 12 GGKTGVRIVVCGEKGTGKSSLIVTAA-----ADTF--PANVPPVLP-------------PTRLPE--D------------ 57 (573)
Q Consensus 12 ~~~~~~kI~ivG~~~vGKSSLin~l~-----~~~~--~~~~~~~~~-------------~~~~~~--~------------ 57 (573)
..++...++++|.+|||||||++.|. +.+. ....++... +.+... .
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYD 89 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHH
Confidence 34567889999999999999999998 4331 111111000 000000 0
Q ss_pred --------------ccCCceeEEEEeCCCCccchhhhH------hhhccCCEEEEEEeCCCcccHHHHHHHHH---HHHH
Q 008219 58 --------------FYPDRVPITIIDTPSSVEDRGKLG------EELRRADAVVLTYACDRPETLDELSTFWL---PELR 114 (573)
Q Consensus 58 --------------~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~ad~il~v~D~~~~~s~~~~~~~~~---~~l~ 114 (573)
.....+.+.||||||+........ .++.. +++++|+|+....+.......+. ....
T Consensus 90 ~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 168 (262)
T 1yrb_A 90 RLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL 168 (262)
T ss_dssp HHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc
Confidence 001236899999999865433211 24566 89999999765444333321111 1112
Q ss_pred hcCCCCcEEEEEeCCCCCCCccccc-HHHH-------HHHH-----------------HHHhcccCeEEEecCCCCCCch
Q 008219 115 RLEVKVPVIVVGCKLDLRDENQQVS-LEQV-------MMPI-----------------MQQFREIETCIECSALKQIQVP 169 (573)
Q Consensus 115 ~~~~~~piilv~NK~D~~~~~~~~~-~~~~-------~~~~-----------------~~~~~~~~~~~~~Sa~~~~gi~ 169 (573)
. .++|+++|+||+|+... .... ..+. ...+ ...++...+++++||++|.|++
T Consensus 169 ~--~~~p~~iv~NK~D~~~~-~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~ 245 (262)
T 1yrb_A 169 R--LGATTIPALNKVDLLSE-EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE 245 (262)
T ss_dssp H--HTSCEEEEECCGGGCCH-HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHH
T ss_pred c--cCCCeEEEEeccccccc-ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHH
Confidence 2 26899999999998764 1110 0110 0011 1333322378999999999999
Q ss_pred hHHHHHHHHH
Q 008219 170 EVFYYAQKAV 179 (573)
Q Consensus 170 ~l~~~i~~~~ 179 (573)
++++.+.+.+
T Consensus 246 ~l~~~i~~~~ 255 (262)
T 1yrb_A 246 DLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 354
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.35 E-value=1.1e-11 Score=128.88 Aligned_cols=130 Identities=15% Similarity=0.105 Sum_probs=83.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCC---CCCCCC--CCcccEEEEEEEc-------------C--CC----eEEEEE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPF---SDNYTP--TTDERYAVNVVDQ-------------P--GG----TKKTVV 481 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~~----~~~~~i 481 (573)
+..++|+++|..++|||||+++|.+... .....+ |....+....+.. + +. ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 3468999999999999999999996532 222222 2322233222211 1 11 267899
Q ss_pred EecCChhHHHhhhccccccccccEEEEEEeCCCh----hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc--
Q 008219 482 LREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDE----SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM-- 555 (573)
Q Consensus 482 ~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~----~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-- 555 (573)
|||+|++.|... ....+..+|++++|+|++++ .+++.+. .+.... ..|+++|+||+|+.....
T Consensus 86 iDtPGh~~f~~~--~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l~-----~~~iivv~NK~Dl~~~~~~~ 154 (408)
T 1s0u_A 86 VDSPGHETLMAT--MLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEILG-----IDKIIIVQNKIDLVDEKQAE 154 (408)
T ss_dssp EECSSHHHHHHH--HHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHTT-----CCCEEEEEECTTSSCTTTTT
T ss_pred EECCCHHHHHHH--HHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHcC-----CCeEEEEEEccCCCCHHHHH
Confidence 999999988776 55567789999999999964 3343332 222221 358999999999976432
Q ss_pred -chhhHHHHHHH
Q 008219 556 -AIQDSTRVFTF 566 (573)
Q Consensus 556 -~~~~~~~~~~~ 566 (573)
..++..++++.
T Consensus 155 ~~~~~i~~~l~~ 166 (408)
T 1s0u_A 155 ENYEQIKEFVKG 166 (408)
T ss_dssp THHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 24556666654
No 355
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.34 E-value=1.8e-12 Score=137.05 Aligned_cols=128 Identities=10% Similarity=0.122 Sum_probs=84.4
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCC-------CCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhcccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRP-------FSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKD 498 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~ 498 (573)
...++|+++|.+++|||||+++|.+.. ......+..|.......+.++ ...+.+|||+|++.|... ...
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~--~~~ 92 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRA--VVS 92 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHH--HHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHH--HHH
Confidence 456899999999999999999999876 111222222222222233333 368899999999988776 667
Q ss_pred ccccccEEEEEEeCCCh---hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc---cchhhHHHHHHHc
Q 008219 499 SLAACDIAVFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA---MAIQDSTRVFTFL 567 (573)
Q Consensus 499 ~~~~~d~vilv~D~~~~---~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~ 567 (573)
.+..+|++++|+|++++ .+++.+. .+... ++|+++|+||+|+.... ...++..++++..
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~------~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~ 157 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHML----ILDHF------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQST 157 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHH----HHHHT------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHHH----HHHHc------CCCEEEEEECCCcccchhHHHHHHHHHHHHhhh
Confidence 78999999999999984 3333322 22222 78999999999997532 1244555666554
No 356
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.34 E-value=3.2e-12 Score=137.36 Aligned_cols=133 Identities=19% Similarity=0.155 Sum_probs=89.0
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCC--CCC-----CCC--------CCCcccEEEEEEEc---CCCeEEEEEEecCChh
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRP--FSD-----NYT--------PTTDERYAVNVVDQ---PGGTKKTVVLREIPEE 488 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~--~~~-----~~~--------~~~~~~~~~~~~~~---~~~~~~~~i~dt~G~~ 488 (573)
+..+|+++|..++|||||+++|+... ... ... ...+.......+.+ ++....+.+|||+|+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 45799999999999999999997521 110 000 00111111111222 3345788899999999
Q ss_pred HHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcC
Q 008219 489 AVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 568 (573)
Q Consensus 489 ~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 568 (573)
.|... ...+++.+|++++|+|++++.+++....|..... . ++|+++|+||+|+...+ .....+++++.++
T Consensus 85 dF~~e--v~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~------~ipiIvviNKiDl~~a~-~~~v~~el~~~lg 154 (600)
T 2ywe_A 85 DFSYE--VSRALAACEGALLLIDASQGIEAQTVANFWKAVE-Q------DLVIIPVINKIDLPSAD-VDRVKKQIEEVLG 154 (600)
T ss_dssp GGHHH--HHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-T------TCEEEEEEECTTSTTCC-HHHHHHHHHHTSC
T ss_pred hHHHH--HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-C------CCCEEEEEeccCccccC-HHHHHHHHHHhhC
Confidence 88776 6677899999999999999988888777765543 2 89999999999997643 2333455666666
Q ss_pred C
Q 008219 569 M 569 (573)
Q Consensus 569 ~ 569 (573)
+
T Consensus 155 ~ 155 (600)
T 2ywe_A 155 L 155 (600)
T ss_dssp C
T ss_pred C
Confidence 5
No 357
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.34 E-value=9.6e-13 Score=133.24 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=68.4
Q ss_pred CCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccccc
Q 008219 60 PDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVS 139 (573)
Q Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~ 139 (573)
..++.+.||||||...... .....+|++++|+|++....+..+.. .. . ++|+++|+||+|+... ..
T Consensus 146 ~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~----~~--~--~~p~ivv~NK~Dl~~~---~~ 211 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK----GL--M--EVADLIVINKDDGDNH---TN 211 (341)
T ss_dssp HTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH----HH--H--HHCSEEEECCCCTTCH---HH
T ss_pred ccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH----hh--h--cccCEEEEECCCCCCh---HH
Confidence 4578899999999765433 35689999999999876543221110 00 1 4689999999998764 11
Q ss_pred HHHHHHHHHH---Hhcc-----cCeEEEecCCCCCCchhHHHHHHHHHh
Q 008219 140 LEQVMMPIMQ---QFRE-----IETCIECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 140 ~~~~~~~~~~---~~~~-----~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
.......+.. .++. ..+++++||++|.|++++++.+.+.+.
T Consensus 212 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 212 VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1111122222 2221 237899999999999999999988653
No 358
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.34 E-value=3.9e-11 Score=120.79 Aligned_cols=83 Identities=19% Similarity=0.235 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCC-CCeeecccccCC---------------ceeEEEEeCCCCccchh
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTF-PANVPPVL-PPTRLPEDFYPD---------------RVPITIIDTPSSVEDRG 78 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~-~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 78 (573)
.++|+|+|.||||||||+|+|++..+ +.++|++. ....-.+.+... ...+.+|||||+..+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 47999999999999999999998763 33344321 111111111111 25799999999987542
Q ss_pred ----h---hHhhhccCCEEEEEEeCCC
Q 008219 79 ----K---LGEELRRADAVVLTYACDR 98 (573)
Q Consensus 79 ----~---~~~~~~~ad~il~v~D~~~ 98 (573)
+ ...+++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2 2245899999999999986
No 359
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.34 E-value=4.8e-12 Score=131.57 Aligned_cols=131 Identities=14% Similarity=0.143 Sum_probs=84.3
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCC---CCCCC--CCcccEEEEEEEc-------------C--CC----eEEEE
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFS---DNYTP--TTDERYAVNVVDQ-------------P--GG----TKKTV 480 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~---~~~~~--~~~~~~~~~~~~~-------------~--~~----~~~~~ 480 (573)
.+..++|+++|..++|||||+++|++.... ....+ |....+....+.. + +. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 356689999999999999999999965322 12222 2222232222211 1 11 26789
Q ss_pred EEecCChhHHHhhhccccccccccEEEEEEeCCCh----hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc-
Q 008219 481 VLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDE----SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM- 555 (573)
Q Consensus 481 i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~----~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~- 555 (573)
+|||+|++.|... ....+..+|++++|+|++++ .+++.+. .+.... ..|+++|+||+|+.....
T Consensus 87 iiDtPGh~~f~~~--~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~-----~~~iivviNK~Dl~~~~~~ 155 (410)
T 1kk1_A 87 FIDAPGHEALMTT--MLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG-----QKNIIIAQNKIELVDKEKA 155 (410)
T ss_dssp EEECSSHHHHHHH--HHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT-----CCCEEEEEECGGGSCHHHH
T ss_pred EEECCChHHHHHH--HHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC-----CCcEEEEEECccCCCHHHH
Confidence 9999999988776 45566789999999999964 3333332 222221 458999999999976432
Q ss_pred --chhhHHHHHHH
Q 008219 556 --AIQDSTRVFTF 566 (573)
Q Consensus 556 --~~~~~~~~~~~ 566 (573)
..++..++++.
T Consensus 156 ~~~~~~i~~~l~~ 168 (410)
T 1kk1_A 156 LENYRQIKEFIEG 168 (410)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 23455555543
No 360
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.33 E-value=3e-12 Score=138.87 Aligned_cols=136 Identities=14% Similarity=0.073 Sum_probs=87.4
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCC-------------------------------CCCcccEEEEEEEcC
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-------------------------------PTTDERYAVNVVDQP 473 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~ 473 (573)
.+..+||+++|.+|||||||+++|++........ +..+.......+..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~- 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST- 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence 3456899999999999999999999764332211 11122222222333
Q ss_pred CCeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChh---hH--HHHHHHHHHHHhcCCCCCCC-CcEEEEEeC
Q 008219 474 GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDES---SW--KRATELLVEVASYGEDTGFE-VPCLIVAAK 547 (573)
Q Consensus 474 ~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~---s~--~~~~~~~~~~~~~~~~~~~~-~p~ilv~nK 547 (573)
....+.||||+|++.|... ...+++.+|++|+|+|++++. +| .........+.... + .|+|+|+||
T Consensus 243 -~~~~~~iiDTPG~e~f~~~--~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-----gi~~iIVVvNK 314 (611)
T 3izq_1 243 -HRANFTIVDAPGHRDFVPN--AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-----GIHNLIIAMNK 314 (611)
T ss_dssp -SSCEEEEEECCSSSCHHHH--HTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-----TCCEEEEEEEC
T ss_pred -CCceEEEEECCCCcccHHH--HHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-----CCCeEEEEEec
Confidence 3467899999999998887 677889999999999998752 11 11122222222222 4 459999999
Q ss_pred CCCcccc-c----chhhHHHHHHHcCC
Q 008219 548 DDLDSFA-M----AIQDSTRVFTFLVM 569 (573)
Q Consensus 548 ~Dl~~~~-~----~~~~~~~~~~~~~~ 569 (573)
+|+...+ . ...+...+.+++++
T Consensus 315 iDl~~~~~~~~~ei~~~l~~~l~~~g~ 341 (611)
T 3izq_1 315 MDNVDWSQQRFEEIKSKLLPYLVDIGF 341 (611)
T ss_dssp TTTTTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhHHHHHHHHHHHHHHHHhhcc
Confidence 9997622 1 13445555555553
No 361
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.33 E-value=4.6e-12 Score=125.99 Aligned_cols=76 Identities=11% Similarity=0.060 Sum_probs=64.5
Q ss_pred CeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCC----------ChhhHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 008219 475 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSS----------DESSWKRATELLVEVASYGEDTGFEVPCLIV 544 (573)
Q Consensus 475 ~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv 544 (573)
+..++.+|||+|++.++.+ +..++++++++|+|||++ +..+|.+...|+..+....... ++|++|+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~--w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~--~~~iiL~ 240 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRK--WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ--NSSVILF 240 (327)
T ss_dssp TTEEEEEEEECCSHHHHTT--GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT--TCEEEEE
T ss_pred eceeeEEEEcCCchhHHHH--HHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC--CceEEEE
Confidence 3578899999999999999 999999999999999654 6778998888998887654323 8999999
Q ss_pred EeCCCCcccc
Q 008219 545 AAKDDLDSFA 554 (573)
Q Consensus 545 ~nK~Dl~~~~ 554 (573)
+||+|+...+
T Consensus 241 ~NK~DL~~~k 250 (327)
T 3ohm_A 241 LNKKDLLEEK 250 (327)
T ss_dssp EECHHHHHHH
T ss_pred EECchhhhhh
Confidence 9999997644
No 362
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.33 E-value=5.2e-13 Score=142.19 Aligned_cols=131 Identities=15% Similarity=0.034 Sum_probs=90.0
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCC---------------CC-------CCCCcccEEEEEEEcCCCeEEEEEEec
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSD---------------NY-------TPTTDERYAVNVVDQPGGTKKTVVLRE 484 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~---------------~~-------~~~~~~~~~~~~~~~~~~~~~~~i~dt 484 (573)
+..+|+|+|.+|||||||+++|+...... .. ....+.......+.+ +...+.+|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY--KDYLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE--TTEEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe--CCEEEEEEEC
Confidence 35699999999999999999997211100 00 011122222223333 3578899999
Q ss_pred CChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHH
Q 008219 485 IPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVF 564 (573)
Q Consensus 485 ~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 564 (573)
+|+..|... +..+++.+|++++|+|++++.+.+....|. .+... ++|+++|+||+|+.... ..+...++.
T Consensus 90 PG~~df~~~--~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~------~iPiivviNK~Dl~~~~-~~~~l~ei~ 159 (528)
T 3tr5_A 90 PGHADFTED--TYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLR------HTPIMTFINKMDRDTRP-SIELLDEIE 159 (528)
T ss_dssp CCSTTCCHH--HHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTT------TCCEEEEEECTTSCCSC-HHHHHHHHH
T ss_pred CCchhHHHH--HHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc------CCCEEEEEeCCCCcccc-HHHHHHHHH
Confidence 999888777 778899999999999999986666655443 33332 79999999999996532 234455666
Q ss_pred HHcCC
Q 008219 565 TFLVM 569 (573)
Q Consensus 565 ~~~~~ 569 (573)
+.++.
T Consensus 160 ~~l~~ 164 (528)
T 3tr5_A 160 SILRI 164 (528)
T ss_dssp HHHCC
T ss_pred HhhCC
Confidence 66665
No 363
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.33 E-value=4.6e-12 Score=126.40 Aligned_cols=76 Identities=14% Similarity=0.048 Sum_probs=66.1
Q ss_pred CeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCC----------ChhhHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 008219 475 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSS----------DESSWKRATELLVEVASYGEDTGFEVPCLIV 544 (573)
Q Consensus 475 ~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv 544 (573)
+...+.+|||+|++.++.+ +..++++++++|+|||++ +..+|.+...|+..+....... ++|++|+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~--w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~--~~piiLv 234 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKX--WVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK--GAVKLIF 234 (340)
T ss_dssp SSCEEEEEECCSCHHHHHH--HHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT--TSEEEEE
T ss_pred eeeeeccccCCCccccccc--HHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC--CCeEEEE
Confidence 3568899999999999999 999999999999999999 7788999999998887654333 8999999
Q ss_pred EeCCCCcccc
Q 008219 545 AAKDDLDSFA 554 (573)
Q Consensus 545 ~nK~Dl~~~~ 554 (573)
+||+|+...+
T Consensus 235 ~NK~DL~~ek 244 (340)
T 4fid_A 235 LNKMDLFEEK 244 (340)
T ss_dssp EECHHHHHHH
T ss_pred EECchhhhhh
Confidence 9999997643
No 364
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.32 E-value=3.5e-12 Score=129.19 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=78.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeecccccCCceeEEEEeCCCCccchh-------hhHhhhccC
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADT-FPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG-------KLGEELRRA 87 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~a 87 (573)
..+|+|||.||||||||+|+|++.. .+.++|.+.-.. ....+...+.+++++||||...... ..-..++.|
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~-~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVT-VPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCE-EEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeee-eeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 4689999999999999999999866 334466532222 3445566788999999999764322 223568899
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCC
Q 008219 88 DAVVLTYACDRPETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLR 132 (573)
Q Consensus 88 d~il~v~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~D~~ 132 (573)
|++++|+|++++.. ... .+..+|.... .++|.+++.||+|..
T Consensus 151 d~il~vvD~~~p~~--~~~-~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 151 NLLFIILDVNKPLH--HKQ-IIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp SEEEEEEETTSHHH--HHH-HHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred CccccccccCccHH--HHH-HHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 99999999987632 222 1334444432 357888888998864
No 365
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.32 E-value=2.3e-12 Score=135.53 Aligned_cols=134 Identities=10% Similarity=0.082 Sum_probs=87.6
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCC--CCCCC----------------------C-------CCCCcccEEEEEEEcCC
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGR--PFSDN----------------------Y-------TPTTDERYAVNVVDQPG 474 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~--~~~~~----------------------~-------~~~~~~~~~~~~~~~~~ 474 (573)
+..++|+++|.+|+|||||+++|++. .+... . ....+.......+..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-- 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-- 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec--
Confidence 35689999999999999999999864 11100 0 011222222222333
Q ss_pred CeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChh---hHH---HHHHHHHHHHhcCCCCCCCCc-EEEEEeC
Q 008219 475 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDES---SWK---RATELLVEVASYGEDTGFEVP-CLIVAAK 547 (573)
Q Consensus 475 ~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~---s~~---~~~~~~~~~~~~~~~~~~~~p-~ilv~nK 547 (573)
....+.+|||+|++.|... ...++..+|++++|+|++++. +|+ .....+..+... ++| +|+|+||
T Consensus 83 ~~~~~~iiDtPGh~~f~~~--~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~------~v~~iivviNK 154 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKN--MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL------GVRQLIVAVNK 154 (458)
T ss_dssp SSEEEEEEECCCCTTHHHH--HHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT------TCCEEEEEEEC
T ss_pred CCceEEEEECCCcHHHHHH--HHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc------CCCeEEEEEEc
Confidence 4567999999999988877 667789999999999999762 332 222233222222 665 8999999
Q ss_pred CCCcc--c-c--cchhhHHHHHHHcCC
Q 008219 548 DDLDS--F-A--MAIQDSTRVFTFLVM 569 (573)
Q Consensus 548 ~Dl~~--~-~--~~~~~~~~~~~~~~~ 569 (573)
+|+.. . + ...++..++++.+++
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~ 181 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGY 181 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 99973 1 1 224566677777763
No 366
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.32 E-value=1.7e-12 Score=139.27 Aligned_cols=118 Identities=12% Similarity=0.083 Sum_probs=82.4
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCC--CCCCCCCcccEEEEEEEcCCC-----------------------------
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFS--DNYTPTTDERYAVNVVDQPGG----------------------------- 475 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------------------------- 475 (573)
...+|+|+|.+|||||||+|+|++..+. .+...+.+++... +.....
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~--i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVA--VMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEE--EECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEE--EEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 4579999999999999999999998874 2333333333221 111100
Q ss_pred -e----------EEEEEEecCChhH-----------HHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCC
Q 008219 476 -T----------KKTVVLREIPEEA-----------VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGE 533 (573)
Q Consensus 476 -~----------~~~~i~dt~G~~~-----------~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~ 533 (573)
. ..+.+|||+|... +... ...++..+|++++|+|+++.........++..+...
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~--~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-- 217 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAV--LRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-- 217 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHH--HHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHH--HHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--
Confidence 0 2578999999753 4444 556778999999999998855555566666665432
Q ss_pred CCCCCCcEEEEEeCCCCcccc
Q 008219 534 DTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 534 ~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
+.|+++|+||+|+....
T Consensus 218 ----~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 218 ----EDKIRVVLNKADMVETQ 234 (550)
T ss_dssp ----GGGEEEEEECGGGSCHH
T ss_pred ----CCCEEEEEECCCccCHH
Confidence 68999999999997643
No 367
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.31 E-value=4.1e-12 Score=128.79 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=85.1
Q ss_pred cCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCC----------cccHHHHHHHHHHHHHhc--CCCCcEEEEE
Q 008219 59 YPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDR----------PETLDELSTFWLPELRRL--EVKVPVIVVG 126 (573)
Q Consensus 59 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~ 126 (573)
..+++.+.+|||+|++.+...+..++++++++|||||+++ ..++.+... |+..+... ..+.|+|||+
T Consensus 197 ~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~-~~~~i~~~~~~~~~piILv~ 275 (362)
T 1zcb_A 197 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN-IFETIVNNRVFSNVSIILFL 275 (362)
T ss_dssp EETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEE
T ss_pred eeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH-HHHHHhcchhhCCCCEEEEE
Confidence 3457899999999999999999999999999999999999 778888775 66665442 3589999999
Q ss_pred eCCCCCCCc---------------ccccHHHHHHHHHHHh--------cccCeEEEecCCCCCCchhHHHHHHHHHh
Q 008219 127 CKLDLRDEN---------------QQVSLEQVMMPIMQQF--------REIETCIECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 127 NK~D~~~~~---------------~~~~~~~~~~~~~~~~--------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
||+|+.... ..+..++....+...| .....+++|||+++.||+++|+.+.+.++
T Consensus 276 NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 276 NKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp ECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 999986320 0134444444333322 11236899999999999999999987654
No 368
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.31 E-value=4.9e-12 Score=139.53 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=83.1
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCccc---------EEEEEEEcCCC---------------------
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDER---------YAVNVVDQPGG--------------------- 475 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~--------------------- 475 (573)
+..++|+|+|.+|+|||||+|+|+|.+...+...+.|.. ........++.
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 456899999999999999999999988765543333310 00011110100
Q ss_pred ------------------------e--EEEEEEecCChhHHH---hhhccccccccccEEEEEEeCCChhhHHHHHHHHH
Q 008219 476 ------------------------T--KKTVVLREIPEEAVA---KLLSNKDSLAACDIAVFVHDSSDESSWKRATELLV 526 (573)
Q Consensus 476 ------------------------~--~~~~i~dt~G~~~~~---~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~ 526 (573)
. ..+.+|||+|..... .. +..+++.+|++++|+|++++.+......|..
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~--~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~ 224 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNEL--SLGYVNNCHAILFVMRASQPCTLGERRYLEN 224 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHH--HTHHHHSSSEEEEEEETTSTTCHHHHHHHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHH--HHHHHHhCCEEEEEEeCCCccchhHHHHHHH
Confidence 0 257899999976532 23 5678899999999999999877776665544
Q ss_pred HHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 527 EVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 527 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
.+... +.|+++|+||+|+...
T Consensus 225 ~l~~~------~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 225 YIKGR------GLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HTTTS------CCCEEEEEECGGGGGG
T ss_pred HHHhh------CCCEEEEEECcccccc
Confidence 43322 6899999999999754
No 369
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.30 E-value=2e-12 Score=132.17 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=75.8
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEE-----------------------------------------
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAV----------------------------------------- 467 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 467 (573)
.+|+|+|++|||||||+|+|++..+......+.+.....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 389999999999999999999987633332222111000
Q ss_pred -------------EEEEcCCCeEEEEEEecCChhHH-------------HhhhccccccccccEEEEEEeCCChhhHHHH
Q 008219 468 -------------NVVDQPGGTKKTVVLREIPEEAV-------------AKLLSNKDSLAACDIAVFVHDSSDESSWKRA 521 (573)
Q Consensus 468 -------------~~~~~~~~~~~~~i~dt~G~~~~-------------~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~ 521 (573)
..+... ....+.+|||+|...+ ..+ ...+++++|++++|+|.++.....
T Consensus 115 ~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~--~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENM--VRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp SCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHH--HHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred cCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHH--HHHHhhcCCeEEEEeecccCCcCC--
Confidence 001111 2335789999996554 444 667889999999999886543222
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 522 TELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
..|+..+....+. +.|+++|+||+|+....
T Consensus 190 ~~~~~l~~~~~~~---~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 190 SDAIKISREVDPS---GDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp CHHHHHHHHSCTT---CTTEEEEEECGGGCCTT
T ss_pred HHHHHHHHHhccc---CCCEEEEEeCCccCCCc
Confidence 2233333322222 78999999999997643
No 370
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.29 E-value=1.9e-12 Score=129.86 Aligned_cols=70 Identities=11% Similarity=0.018 Sum_probs=46.1
Q ss_pred EEEEEEecCChhH-------------HHhhhccccccccccEEEEEEeCCChhhH-HHHHHHHHHHHhcCCCCCCCCcEE
Q 008219 477 KKTVVLREIPEEA-------------VAKLLSNKDSLAACDIAVFVHDSSDESSW-KRATELLVEVASYGEDTGFEVPCL 542 (573)
Q Consensus 477 ~~~~i~dt~G~~~-------------~~~~~~~~~~~~~~d~vilv~D~~~~~s~-~~~~~~~~~~~~~~~~~~~~~p~i 542 (573)
..+.+|||+|... +... ...+++.+|++++|+|+++.... .....++..+.. . +.|++
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~-~-----~~~~i 202 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRM--VMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-E-----GKRTI 202 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHH--HHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-S-----CSSEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHH--HHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC-C-----CCcEE
Confidence 4688999999643 3444 66788999999999998543211 111122233322 1 79999
Q ss_pred EEEeCCCCcccc
Q 008219 543 IVAAKDDLDSFA 554 (573)
Q Consensus 543 lv~nK~Dl~~~~ 554 (573)
+|+||+|+....
T Consensus 203 ~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 203 GVITKLDLMDKG 214 (315)
T ss_dssp EEEECTTSSCSS
T ss_pred EEEcCcccCCcc
Confidence 999999997543
No 371
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.29 E-value=3.4e-12 Score=136.07 Aligned_cols=131 Identities=15% Similarity=0.044 Sum_probs=83.7
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCC---------------C-----CCC--cccEEEEEEEcCCCeEEEEEEec
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY---------------T-----PTT--DERYAVNVVDQPGGTKKTVVLRE 484 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~---------------~-----~~~--~~~~~~~~~~~~~~~~~~~i~dt 484 (573)
...+|+|+|.+|+|||||+++|++....... + ... +.......+.. +...+.+|||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~liDT 89 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY--HDCLVNLLDT 89 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE--TTEEEEEECC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE--CCeEEEEEEC
Confidence 4579999999999999999999863211100 0 000 11111112222 4578899999
Q ss_pred CChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHH
Q 008219 485 IPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVF 564 (573)
Q Consensus 485 ~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 564 (573)
+|++.|... ...+++.+|++++|+|++++..... ..++..+... ++|+++|+||+|+..... .+...++.
T Consensus 90 PG~~df~~~--~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~~------~ipiivviNK~Dl~~~~~-~~~~~~i~ 159 (529)
T 2h5e_A 90 PGHEDFSED--TYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRLR------DTPILTFMNKLDRDIRDP-MELLDEVE 159 (529)
T ss_dssp CCSTTCCHH--HHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTTT------TCCEEEEEECTTSCCSCH-HHHHHHHH
T ss_pred CCChhHHHH--HHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHHc------CCCEEEEEcCcCCccccH-HHHHHHHH
Confidence 999887766 6678899999999999998733221 2222222221 899999999999976432 23345565
Q ss_pred HHcCC
Q 008219 565 TFLVM 569 (573)
Q Consensus 565 ~~~~~ 569 (573)
+.++.
T Consensus 160 ~~l~~ 164 (529)
T 2h5e_A 160 NELKI 164 (529)
T ss_dssp HHHCC
T ss_pred HHhCC
Confidence 66554
No 372
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.29 E-value=2.7e-12 Score=135.43 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=75.5
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCC--CCCC----------------------CC-------CCCCcccEEEEEEEcC
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGR--PFSD----------------------NY-------TPTTDERYAVNVVDQP 473 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~--~~~~----------------------~~-------~~~~~~~~~~~~~~~~ 473 (573)
.+..++|+++|..++|||||+++|+.. .+.. .. ....|.......+..+
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 456789999999999999999999742 1100 00 0011111111223333
Q ss_pred CCeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCCh---hhHHHHHHH---HHHHHhcCCCCCCCCc-EEEEEe
Q 008219 474 GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDE---SSWKRATEL---LVEVASYGEDTGFEVP-CLIVAA 546 (573)
Q Consensus 474 ~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~---~s~~~~~~~---~~~~~~~~~~~~~~~p-~ilv~n 546 (573)
...+.+|||+|++.|... ....+..+|++|+|+|++++ .+|+....+ +..+... ++| +|+|+|
T Consensus 120 --~~~~~iiDtPGh~~f~~~--~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~------~vp~iivviN 189 (467)
T 1r5b_A 120 --HRRFSLLDAPGHKGYVTN--MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ------GINHLVVVIN 189 (467)
T ss_dssp --SEEEEECCCCC-------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT------TCSSEEEEEE
T ss_pred --CeEEEEEECCCcHHHHHH--HHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc------CCCEEEEEEE
Confidence 468899999999998877 66778999999999999986 344322222 2222222 787 999999
Q ss_pred CCCCccc-----c--cchhhHHHHHHHc
Q 008219 547 KDDLDSF-----A--MAIQDSTRVFTFL 567 (573)
Q Consensus 547 K~Dl~~~-----~--~~~~~~~~~~~~~ 567 (573)
|+|+... + ....+..++++++
T Consensus 190 K~Dl~~~~~~~~~~~~i~~e~~~~l~~~ 217 (467)
T 1r5b_A 190 KMDEPSVQWSEERYKECVDKLSMFLRRV 217 (467)
T ss_dssp CTTSTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHh
Confidence 9999541 1 1234566677665
No 373
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.29 E-value=7.8e-12 Score=127.64 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=90.2
Q ss_pred CCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCC----------cccHHHHHHHHHHHHHhc--CCCCcEEEEEe
Q 008219 60 PDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDR----------PETLDELSTFWLPELRRL--EVKVPVIVVGC 127 (573)
Q Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~N 127 (573)
.+++.+.||||+|++.+...+..++++++++|||||+++ ..++.+... |+..+... ..+.|++||+|
T Consensus 214 ~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~piiLvgN 292 (402)
T 1azs_C 214 VDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTISVILFLN 292 (402)
T ss_dssp ETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCCEEEEEE
T ss_pred cCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCeEEEEEE
Confidence 456899999999999999999999999999999999999 889998885 87777653 36899999999
Q ss_pred CCCCCCCccc---c---------------------------cHHHHHHHHHHHhc----------ccCeEEEecCCCCCC
Q 008219 128 KLDLRDENQQ---V---------------------------SLEQVMMPIMQQFR----------EIETCIECSALKQIQ 167 (573)
Q Consensus 128 K~D~~~~~~~---~---------------------------~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~g 167 (573)
|+|+... +. + ..+++...+...|. ....+++|||+++.|
T Consensus 293 K~DL~~~-ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~n 371 (402)
T 1azs_C 293 KQDLLAE-KVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTEN 371 (402)
T ss_dssp CHHHHHH-HHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHH
T ss_pred Chhhhhh-hhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcC
Confidence 9998542 11 1 02222222222221 112577999999999
Q ss_pred chhHHHHHHHHHh
Q 008219 168 VPEVFYYAQKAVL 180 (573)
Q Consensus 168 i~~l~~~i~~~~~ 180 (573)
|+++|..+.+.++
T Consensus 372 V~~vF~~v~~~I~ 384 (402)
T 1azs_C 372 IRRVFNDCRDIIQ 384 (402)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877553
No 374
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.28 E-value=1.8e-11 Score=135.78 Aligned_cols=116 Identities=18% Similarity=0.190 Sum_probs=80.3
Q ss_pred cce-EEEEEcCCCCCHHHHHHHHhcCCC-------CCCCCCCCC-------------Ceeecccc-----cCCceeEEEE
Q 008219 15 TGV-RIVVCGEKGTGKSSLIVTAAADTF-------PANVPPVLP-------------PTRLPEDF-----YPDRVPITII 68 (573)
Q Consensus 15 ~~~-kI~ivG~~~vGKSSLin~l~~~~~-------~~~~~~~~~-------------~~~~~~~~-----~~~~~~~~i~ 68 (573)
.++ +|+|+|+.++|||||..+|+...- +.....+.+ .......+ ..+++.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 445 599999999999999999973220 000000000 00011111 1246899999
Q ss_pred eCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 008219 69 DTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (573)
Q Consensus 69 Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~ 134 (573)
||||+.+|......+++-+|++|+|+|+...-..+... .++...+. ++|.++|+||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~--v~~~a~~~--~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSET--VWRQANKY--GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHH--TCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHH--HHHHHHHc--CCCeEEEEccccccCc
Confidence 99999999999999999999999999988765444433 44444444 8999999999998654
No 375
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.28 E-value=9.7e-12 Score=127.88 Aligned_cols=86 Identities=15% Similarity=0.041 Sum_probs=47.3
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccE-EEEE--EE-------------------cCC-CeEEEEEEecC
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERY-AVNV--VD-------------------QPG-GTKKTVVLREI 485 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~-~~~~--~~-------------------~~~-~~~~~~i~dt~ 485 (573)
+||+++|.||||||||+|+|++.. ..+...+.++.. .... +. +.+ ....+.+|||+
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 489999999999999999999987 333333333222 1111 11 111 13578899999
Q ss_pred ChhH----HHhhh-ccccccccccEEEEEEeCCCh
Q 008219 486 PEEA----VAKLL-SNKDSLAACDIAVFVHDSSDE 515 (573)
Q Consensus 486 G~~~----~~~~~-~~~~~~~~~d~vilv~D~~~~ 515 (573)
|... ...+. ....+++.+|++++|+|+++.
T Consensus 80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 9743 22220 022467999999999999875
No 376
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.27 E-value=5.6e-12 Score=141.69 Aligned_cols=136 Identities=13% Similarity=0.040 Sum_probs=89.1
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCC-------CCC--CC-----CCCCcccEEEEEEEcCCCeEEEEEEecCChhHH
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRP-------FSD--NY-----TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV 490 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~-------~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~ 490 (573)
.+..++|+++|.+++|||||+++|++.. +.. .. ..+.+.......+.+..+...+.+|||+|++.|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3456899999999999999999998631 000 00 011111111112223334568899999999999
Q ss_pred HhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCccccc----chhhHHHHHH
Q 008219 491 AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFAM----AIQDSTRVFT 565 (573)
Q Consensus 491 ~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~----~~~~~~~~~~ 565 (573)
... ....++.+|++|+|+|++++...+ ...++..+... ++| +|+|+||+|+..++. ..++..++++
T Consensus 373 ~~~--mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l------gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk 443 (1289)
T 3avx_A 373 VKN--MITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV------GVPYIIVFLNKCDMVDDEELLELVEMEVRELLS 443 (1289)
T ss_dssp HHH--HHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH------TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc------CCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence 876 667789999999999999864332 33344444333 788 789999999975321 2356777777
Q ss_pred HcCC
Q 008219 566 FLVM 569 (573)
Q Consensus 566 ~~~~ 569 (573)
++++
T Consensus 444 ~~G~ 447 (1289)
T 3avx_A 444 QYDF 447 (1289)
T ss_dssp HTTS
T ss_pred hccc
Confidence 7763
No 377
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.27 E-value=1.1e-11 Score=125.15 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=72.4
Q ss_pred eEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCC----------hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 008219 476 TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSD----------ESSWKRATELLVEVASYGEDTGFEVPCLIVA 545 (573)
Q Consensus 476 ~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 545 (573)
...+.+|||+|++.++.+ +..++++++++|+|||+++ ..+|.+...|+..+....... ++|+|||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~--w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~--~~piiLv~ 267 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKK--WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT--DTSIILFL 267 (353)
T ss_dssp TEEEEEEEECCSGGGGGG--GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT--TSEEEEEE
T ss_pred CeeEEEEeCCCchhhhHH--HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc--CCcEEEEE
Confidence 468899999999999999 9999999999999999999 567999999999887753222 89999999
Q ss_pred eCCCCcccc----------------cchhhHHHHHH
Q 008219 546 AKDDLDSFA----------------MAIQDSTRVFT 565 (573)
Q Consensus 546 nK~Dl~~~~----------------~~~~~~~~~~~ 565 (573)
||+|+...+ +..+++.++++
T Consensus 268 NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~ 303 (353)
T 1cip_A 268 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ 303 (353)
T ss_dssp ECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHH
T ss_pred ECcCchhhhccccchhhcccccCCCCCHHHHHHHHH
Confidence 999996433 34677778876
No 378
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.25 E-value=3.8e-12 Score=123.48 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=56.0
Q ss_pred CCCccc-hhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHH
Q 008219 71 PSSVED-RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ 149 (573)
Q Consensus 71 ~G~~~~-~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~ 149 (573)
||+... .......+..+|+++.|+|+.++.+..+.. +. . . ++|.++|+||+|+... ...+.. .....
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l----l-~k~~iivlNK~DL~~~---~~~~~~-~~~~~ 72 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F----S-RKETIILLNKVDIADE---KTTKKW-VEFFK 72 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C----T-TSEEEEEEECGGGSCH---HHHHHH-HHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h----c-CCCcEEEEECccCCCH---HHHHHH-HHHHH
Confidence 665433 245668899999999999999987665422 11 1 1 7899999999999864 111111 11122
Q ss_pred HhcccCeEEEecCCCCCCchhHHH
Q 008219 150 QFREIETCIECSALKQIQVPEVFY 173 (573)
Q Consensus 150 ~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (573)
..+ . ++ .+||+++.|++++++
T Consensus 73 ~~g-~-~v-~iSa~~~~gi~~L~~ 93 (262)
T 3cnl_A 73 KQG-K-RV-ITTHKGEPRKVLLKK 93 (262)
T ss_dssp HTT-C-CE-EECCTTSCHHHHHHH
T ss_pred HcC-C-eE-EEECCCCcCHHHHHH
Confidence 222 2 56 999999999887665
No 379
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.25 E-value=4.3e-12 Score=136.83 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=77.6
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcC----------------CCeEEEEEEecCChhHHH
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP----------------GGTKKTVVLREIPEEAVA 491 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~dt~G~~~~~ 491 (573)
.++|+|+|.+|+|||||+++|++...........+.......+... .....+.+|||+|++.|.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 4689999999999999999999765432211011111111111110 011258899999999998
Q ss_pred hhhccccccccccEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 492 KLLSNKDSLAACDIAVFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 492 ~~~~~~~~~~~~d~vilv~D~~~---~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
.+ ...+++.+|++++|+|+++ +.+++.+.. +... ++|+++|+||+|+..
T Consensus 85 ~~--~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~~------~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 85 TL--RKRGGALADLAILIVDINEGFKPQTQEALNI----LRMY------RTPFVVAANKIDRIH 136 (594)
T ss_dssp TS--BCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHHT------TCCEEEEEECGGGST
T ss_pred HH--HHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHHc------CCeEEEEeccccccc
Confidence 87 7778899999999999999 555554432 2222 899999999999964
No 380
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.24 E-value=2.6e-11 Score=124.94 Aligned_cols=140 Identities=15% Similarity=0.134 Sum_probs=80.7
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCC------CCcccEEEEEE--EcCCCeEEEEEEecCChhHHH------
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTP------TTDERYAVNVV--DQPGGTKKTVVLREIPEEAVA------ 491 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~i~dt~G~~~~~------ 491 (573)
.-.++|+|+|++|||||||+++|++..+...... ..+.......+ ...+....+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 3457999999999999999999999876322110 11111111111 112223477899999975431
Q ss_pred -hh-----------hc-----cccccccccEEEEEEeCCCh-hhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 492 -KL-----------LS-----NKDSLAACDIAVFVHDSSDE-SSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 492 -~~-----------~~-----~~~~~~~~d~vilv~D~~~~-~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
.+ +. .+.++.++++.+++|+.... .++...+ .|+..+.. ++|+|+|+||+|+..
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-------~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-------KVNIIPLIAKADTLT 181 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-------TSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-------cCcEEEEEEcccCcc
Confidence 11 00 23455666655555554432 3466665 46666531 799999999999976
Q ss_pred cc-cc--hhhHHHHHHHcCCccC
Q 008219 553 FA-MA--IQDSTRVFTFLVMVLY 572 (573)
Q Consensus 553 ~~-~~--~~~~~~~~~~~~~~~~ 572 (573)
.+ +. ..++.++++.+++++|
T Consensus 182 ~~ev~~~k~~i~~~~~~~~i~~~ 204 (418)
T 2qag_C 182 PEECQQFKKQIMKEIQEHKIKIY 204 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEE
Confidence 44 22 3677888888898876
No 381
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.24 E-value=1.3e-11 Score=117.29 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=85.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC----C------------eeecc----cc--------------cC
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP----P------------TRLPE----DF--------------YP 60 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~----~------------~~~~~----~~--------------~~ 60 (573)
+..+|+|+|++|||||||+++|+...+.....++.. . ..... .+ ..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 468999999999999999999997654332111100 0 00000 00 01
Q ss_pred CceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccH
Q 008219 61 DRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSL 140 (573)
Q Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~ 140 (573)
.+..+.++|++|...... .+-...+.++.|+|.......... .... . +.|+++|+||+|+... +....
T Consensus 117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~---~~~~---~--~~~~iiv~NK~Dl~~~-~~~~~ 184 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEK---HPGI---M--KTADLIVINKIDLADA-VGADI 184 (226)
T ss_dssp GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTT---CHHH---H--TTCSEEEEECGGGHHH-HTCCH
T ss_pred CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhh---hhhH---h--hcCCEEEEeccccCch-hHHHH
Confidence 122566677766321111 111234555667774322111100 1111 1 5788999999998653 11233
Q ss_pred HHHHHHHHHHhcccCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 141 EQVMMPIMQQFREIETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
++. ......+....+++++||++|.|++++|+.+.+.+
T Consensus 185 ~~~-~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 185 KKM-ENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp HHH-HHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHH-HHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 332 33334443234899999999999999999988754
No 382
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.24 E-value=1.2e-12 Score=137.53 Aligned_cols=114 Identities=16% Similarity=0.158 Sum_probs=79.0
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEE
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 507 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vi 507 (573)
..+|+++|.+++|||||+++|.+..+.....+..+.+.....+.++ ...+.+|||+|++.|..+ ....+..+|+++
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~--~~~~~~~aD~aI 79 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSM--RARGAQATDIVV 79 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTS--BCSSSBSCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHH--HHHHHhhCCEEE
Confidence 4589999999999999999998755433322222222222223333 346789999999999887 777889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 508 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 508 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
+|+|++++...+..+ .+..+... ++|+++++||+|+..
T Consensus 80 LVVda~~g~~~qT~e-~l~~~~~~------~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 80 LVVAADDGVMPQTIE-AIQHAKAA------QVPVVVAVNKIDKPE 117 (501)
T ss_dssp EEEETTTBSCTTTHH-HHHHHHHT------TCCEEEEEECSSSST
T ss_pred EEeecccCccHHHHH-HHHHHHhc------CceEEEEEEeccccc
Confidence 999999842221112 22222222 799999999999975
No 383
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.24 E-value=1.3e-11 Score=125.20 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=55.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCC-CCCeeeccccc-------------------CCceeEEEEeCCCCcc
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTF-PANVPPV-LPPTRLPEDFY-------------------PDRVPITIIDTPSSVE 75 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~-~~~~~~~-~~~~~~~~~~~-------------------~~~~~~~i~Dt~G~~~ 75 (573)
++|+|+|.||||||||+|+|++... ..++|.+ ...+.-...+. ..+..+.+|||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999998652 2334331 11111011111 1235799999999876
Q ss_pred chh-------hhHhhhccCCEEEEEEeCCC
Q 008219 76 DRG-------KLGEELRRADAVVLTYACDR 98 (573)
Q Consensus 76 ~~~-------~~~~~~~~ad~il~v~D~~~ 98 (573)
... ....+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 531 22346899999999999986
No 384
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.23 E-value=2e-11 Score=114.52 Aligned_cols=131 Identities=14% Similarity=0.066 Sum_probs=76.3
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChh----------HHHhhhc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEE----------AVAKLLS 495 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~----------~~~~~~~ 495 (573)
....+|+++|++|||||||+|+|++..+.....++.++......+... + .+.+|||+|.. .+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~-- 98 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA-D--GKRLVDLPGYGYAEVPEEMKRKWQRA-- 98 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE-T--TEEEEECCCCC------CCHHHHHHH--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec-C--CEEEEECcCCcccccCHHHHHHHHHH--
Confidence 345799999999999999999999987433333333332222333333 2 46689999963 23322
Q ss_pred ccccc---ccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc--c-hhhHHHHHHHcC
Q 008219 496 NKDSL---AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM--A-IQDSTRVFTFLV 568 (573)
Q Consensus 496 ~~~~~---~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~-~~~~~~~~~~~~ 568 (573)
...++ ..++++++|+|++++.++... .+....... ++|+++|+||+|+.+... . ...+..++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~-----~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~ 170 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS-----NIAVLVLLTKADKLASGARKAQLNMVREAVLAFN 170 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT-----TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHHc-----CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC
Confidence 11222 578999999999987555321 111111221 799999999999876421 1 345555655543
No 385
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.19 E-value=2.5e-12 Score=139.13 Aligned_cols=118 Identities=19% Similarity=0.131 Sum_probs=63.2
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCC-------------------------------CCCCcccEEEEEEEcC
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-------------------------------TPTTDERYAVNVVDQP 473 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 473 (573)
.+..++|+++|.+|+|||||+++|++....... .+.+|.......+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 456789999999999999999999642111000 111222222222222
Q ss_pred CCeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChh---hH--HHHHH-HHHHHHhcCCCCCCCCc-EEEEEe
Q 008219 474 GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDES---SW--KRATE-LLVEVASYGEDTGFEVP-CLIVAA 546 (573)
Q Consensus 474 ~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~---s~--~~~~~-~~~~~~~~~~~~~~~~p-~ilv~n 546 (573)
+...+.||||+|++.|... ....++.+|++|+|+|++++. .| ..... .+..+... ++| +|+|+|
T Consensus 253 -~~~~i~iiDTPGh~~f~~~--~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l------gip~iIvviN 323 (592)
T 3mca_A 253 -DKKIYEIGDAPGHRDFISG--MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL------GISEIVVSVN 323 (592)
T ss_dssp -------CCEEESSSEEEEE--CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS------SCCCEEEEEE
T ss_pred -CCeEEEEEECCChHHHHHH--HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc------CCCeEEEEEe
Confidence 3467889999999888766 667789999999999998642 12 11222 22222222 666 999999
Q ss_pred CCCCcc
Q 008219 547 KDDLDS 552 (573)
Q Consensus 547 K~Dl~~ 552 (573)
|+|+..
T Consensus 324 KiDl~~ 329 (592)
T 3mca_A 324 KLDLMS 329 (592)
T ss_dssp CGGGGT
T ss_pred cccccc
Confidence 999975
No 386
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.19 E-value=7.1e-11 Score=118.92 Aligned_cols=86 Identities=20% Similarity=0.154 Sum_probs=55.6
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCe---------------EEEEEEecCChhHHH--
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGT---------------KKTVVLREIPEEAVA-- 491 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~dt~G~~~~~-- 491 (573)
++|+++|.||||||||+|+|++........+..|.......+.+++.. ..+.+|||+|...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 589999999999999999999877432222222222222334444221 478899999976543
Q ss_pred --hhhc-cccccccccEEEEEEeCCC
Q 008219 492 --KLLS-NKDSLAACDIAVFVHDSSD 514 (573)
Q Consensus 492 --~~~~-~~~~~~~~d~vilv~D~~~ 514 (573)
.+.. ...+++++|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2200 1234789999999999986
No 387
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.19 E-value=2.6e-11 Score=133.63 Aligned_cols=131 Identities=16% Similarity=0.030 Sum_probs=87.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCC--CCC---CCC-------------CCCCcccEEEEEEEcCCCeEEEEEEecCCh
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGR--PFS---DNY-------------TPTTDERYAVNVVDQPGGTKKTVVLREIPE 487 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~--~~~---~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~ 487 (573)
.+..+|+|+|.+|+|||||+++|+.. .+. ... ....+.......+.+ +...+.+|||+|+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~--~~~~i~liDTPG~ 87 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW--KDHRINIIDTPGH 87 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE--TTEEEEEECCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE--CCeEEEEEECcCc
Confidence 45689999999999999999999831 110 000 001111111222333 3478899999999
Q ss_pred hHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHc
Q 008219 488 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFL 567 (573)
Q Consensus 488 ~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 567 (573)
..|... ...+++.+|++++|+|+++..+++....|.. +... ++|+++|+||+|+.... ......++.+.+
T Consensus 88 ~df~~~--~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~------~~p~ivviNKiD~~~~~-~~~~~~~l~~~l 157 (691)
T 1dar_A 88 VDFTIE--VERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY------KVPRIAFANKMDKTGAD-LWLVIRTMQERL 157 (691)
T ss_dssp TTCHHH--HHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT------TCCEEEEEECTTSTTCC-HHHHHHHHHHTT
T ss_pred cchHHH--HHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc------CCCEEEEEECCCcccCC-HHHHHHHHHHHh
Confidence 887776 7778899999999999999887777666553 3332 79999999999997543 223334444444
Q ss_pred C
Q 008219 568 V 568 (573)
Q Consensus 568 ~ 568 (573)
+
T Consensus 158 ~ 158 (691)
T 1dar_A 158 G 158 (691)
T ss_dssp C
T ss_pred C
Confidence 4
No 388
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.18 E-value=2e-11 Score=124.54 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=80.7
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEE
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 509 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv 509 (573)
+|+++|.+|+|||||+++|+. ...|.......+.. +...+.+|||+|+++|... ....++.+|++++|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~--~~~~i~iiDtPGh~~f~~~--~~~~~~~aD~ailV 90 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDK--EGRNMVFVDAHSYPKTLKS--LITALNISDIAVLC 90 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECS--SSSEEEEEECTTTTTCHHH--HHHHHHTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEec--CCeEEEEEECCChHHHHHH--HHHHHHHCCEEEEE
Confidence 899999999999999999981 12222223233333 3456899999999887655 45567999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcE-EEEEe-CCCCcccccc---hhhHHHHHHHcC
Q 008219 510 HDSSDESSWKRATELLVEVASYGEDTGFEVPC-LIVAA-KDDLDSFAMA---IQDSTRVFTFLV 568 (573)
Q Consensus 510 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~-ilv~n-K~Dl~~~~~~---~~~~~~~~~~~~ 568 (573)
+| ++ ..+.....++..+... ++|. ++|+| |+|+ ..+.. .++.+++++.++
T Consensus 91 vd-~~-g~~~qt~e~~~~~~~~------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~ 145 (370)
T 2elf_A 91 IP-PQ-GLDAHTGECIIALDLL------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTV 145 (370)
T ss_dssp EC-TT-CCCHHHHHHHHHHHHT------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTST
T ss_pred Ec-CC-CCcHHHHHHHHHHHHc------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcC
Confidence 99 54 3455555665555443 6787 88999 9999 43321 245555655443
No 389
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.17 E-value=2.9e-11 Score=136.07 Aligned_cols=118 Identities=18% Similarity=0.083 Sum_probs=84.3
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCC----------------CC--CCcccEEEEEEE------------cCCC
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY----------------TP--TTDERYAVNVVD------------QPGG 475 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~----------------~~--~~~~~~~~~~~~------------~~~~ 475 (573)
....||+|+|.+|+|||||+++|++....... .. |........... .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 35679999999999999999999864211110 01 111111111121 1334
Q ss_pred eEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 476 TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 476 ~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
...+.+|||+|+..|... ...+++.+|++++|+|++++.+++....|.... .. ++|+++|+||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~--~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~~------~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSE--VTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-GE------RIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHH--HHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-HT------TCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHH--HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-Hc------CCCeEEEEECCCcch
Confidence 678999999999888877 778889999999999999998888766655433 22 799999999999873
No 390
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.16 E-value=1.4e-10 Score=128.07 Aligned_cols=120 Identities=13% Similarity=-0.012 Sum_probs=82.0
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCC--CCCC-----------C-----CCCCcccEEEEEEEcC-----CCeEEEEEE
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRP--FSDN-----------Y-----TPTTDERYAVNVVDQP-----GGTKKTVVL 482 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~~-----~~~~~~~i~ 482 (573)
.+..+|+|+|..|+|||||+++|+... +... + ....+.......+.+. +....+.||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 345799999999999999999997431 1100 0 0011111111223322 123788999
Q ss_pred ecCChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 483 REIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 483 dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
||+|+..|... ...+++.+|++|+|+|+++..+.+....|. .+... ++|+++|+||+|+...+
T Consensus 88 DTPG~~df~~~--~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~~------~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 88 DTPGHVDFTIE--VERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANKY------KVPRIAFVNKMDRMGAN 150 (704)
T ss_pred eCCCccchHHH--HHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHHc------CCCEEEEEeCCCccccc
Confidence 99999988777 777889999999999999886655544443 23322 79999999999997643
No 391
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.16 E-value=6.7e-11 Score=130.45 Aligned_cols=117 Identities=15% Similarity=0.057 Sum_probs=81.5
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhC--CCCCC---CCC-------------CCCcccEEEEEEEcCCCeEEEEEEecCCh
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLG--RPFSD---NYT-------------PTTDERYAVNVVDQPGGTKKTVVLREIPE 487 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~--~~~~~---~~~-------------~~~~~~~~~~~~~~~~~~~~~~i~dt~G~ 487 (573)
.+..+|+|+|.+|+|||||+++|++ +.+.. +.. ...+.......+.+ +...+.+|||+|+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~--~~~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW--EGHRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE--TTEEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE--CCeeEEEEECcCC
Confidence 4568999999999999999999984 22110 000 01111111222333 3468899999999
Q ss_pred hHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 488 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 488 ~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
..|... ...+++.+|++++|+|++++.+++....|.. +... ++|+++|+||+|+...
T Consensus 86 ~df~~~--~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~------~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVE--VERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY------GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHH--HHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT------TCCEEEEEECTTSTTC
T ss_pred cchHHH--HHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc------CCCEEEEEECCCcccc
Confidence 877666 6678899999999999999877766655543 3333 7999999999999764
No 392
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.15 E-value=8.6e-11 Score=129.08 Aligned_cols=129 Identities=14% Similarity=0.065 Sum_probs=88.1
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCC------------------CCCcccEEEEEEEcCCCeEEEEEEecCChh
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT------------------PTTDERYAVNVVDQPGGTKKTVVLREIPEE 488 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~ 488 (573)
...+|+|+|.+|+|||||+++|++........ ...+.......+.. +...+.+|||+|++
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~--~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF--RGHRVFLLDAPGYG 85 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE--TTEEEEEEECCCSG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee--CCEEEEEEeCCCcc
Confidence 35689999999999999999998433211000 01122222222222 45788999999999
Q ss_pred HHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcC
Q 008219 489 AVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 568 (573)
Q Consensus 489 ~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 568 (573)
.|... ...+++.+|++++|+|+++....+.. .++..+... ++|+++|+||+|+. ....+..+++++.++
T Consensus 86 ~f~~~--~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~------~ip~ilv~NKiD~~--~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 86 DFVGE--IRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL------GLPRMVVVTKLDKG--GDYYALLEDLRSTLG 154 (665)
T ss_dssp GGHHH--HHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT------TCCEEEEEECGGGC--CCHHHHHHHHHHHHC
T ss_pred chHHH--HHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc------cCCEEEEecCCchh--hhHHHHHHHHHHHhC
Confidence 88776 67788999999999999887443333 344444433 79999999999997 334455666766665
No 393
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.13 E-value=1.1e-10 Score=118.88 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=69.4
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCC-----CCCC----------------------cccE---------------
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-----TPTT----------------------DERY--------------- 465 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-----~~~~----------------------~~~~--------------- 465 (573)
..+|+|+|.+|||||||+|+|++.++.... ..++ +++.
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999998874221 1111 0000
Q ss_pred -------EEEEEEcC-CCeEEEEEEecCChh-------------HHHhhhcccccccccc-EEEEEEeCCChhhHHHHH-
Q 008219 466 -------AVNVVDQP-GGTKKTVVLREIPEE-------------AVAKLLSNKDSLAACD-IAVFVHDSSDESSWKRAT- 522 (573)
Q Consensus 466 -------~~~~~~~~-~~~~~~~i~dt~G~~-------------~~~~~~~~~~~~~~~d-~vilv~D~~~~~s~~~~~- 522 (573)
....+.+. .....+.+|||+|.. .+..+ ...+++.++ ++++|.|++.. +...+
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~iiL~v~~a~~~--~~~~~~ 186 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSD--LANSDA 186 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHH--HHHHHTSTTEEEEEEEETTSC--GGGCHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHH--HHHHHcCCCeEEEEEecCCCc--cchhHH
Confidence 00000001 013568899999942 45555 555665555 55556676653 32222
Q ss_pred -HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 523 -ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 523 -~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
.++..+.. . +.|+++|+||+|+...
T Consensus 187 ~~i~~~~~~----~--~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 187 LKVAKEVDP----Q--GQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHHHHCT----T--CTTEEEEEECGGGSCT
T ss_pred HHHHHHhCc----C--CCceEEEeccccccCc
Confidence 23333322 1 7999999999999754
No 394
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.11 E-value=1.5e-10 Score=117.33 Aligned_cols=118 Identities=16% Similarity=0.097 Sum_probs=79.3
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhH--------HHhhhccc
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA--------VAKLLSNK 497 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~--------~~~~~~~~ 497 (573)
....+|++||.||||||||+|+|.+........+..|.+.....+.+. ...++++||+|--. ... ..
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~--~~~i~l~D~pGl~~~a~~~~~~g~~---~l 144 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK--GAKIQMLDLPGIIDGAKDGRGRGKQ---VI 144 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEET--TEEEEEEECGGGCCC-----CHHHH---HH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeC--CcEEEEEeCCCccCCchhhhHHHHH---HH
Confidence 345799999999999999999999977444444444444444555555 46788999999411 111 22
Q ss_pred cccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCc
Q 008219 498 DSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 551 (573)
Q Consensus 498 ~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 551 (573)
..++.||++++|+|++++ ....+....++........ ..|.+++.||+|..
T Consensus 145 ~~i~~ad~il~vvD~~~p--~~~~~~i~~EL~~~~~~l~-~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 145 AVARTCNLLFIILDVNKP--LHHKQIIEKELEGVGIRLN-KTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHCSEEEEEEETTSH--HHHHHHHHHHHHHTTEEET-CCCCCEEEEECSSS
T ss_pred HHHHhcCccccccccCcc--HHHHHHHHHHHHHhhHhhc-cCChhhhhhHhhhh
Confidence 356899999999999987 3444433344433321111 67888999999974
No 395
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.10 E-value=1.1e-10 Score=120.26 Aligned_cols=138 Identities=19% Similarity=0.133 Sum_probs=89.2
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhH----HHhhh-cccccccccc
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----VAKLL-SNKDSLAACD 504 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~----~~~~~-~~~~~~~~~d 504 (573)
.|+++|.+|||||||++++.+........+..+.......+... +...+.+||++|... ...+. .....++.++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~-~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEec-CcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 58999999999999999999875433333333444445556665 345788999999521 11110 0112346799
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCcc
Q 008219 505 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVL 571 (573)
Q Consensus 505 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 571 (573)
.++.|+|++ ..++..+..+..++....... ...|.++|+||+|+... ....+..+++++.++++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL-~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~v 301 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEE-EAVKALADALAREGLAV 301 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSCE
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHh-hcCCEEEEEECCChhhH-HHHHHHHHHHHhcCCeE
Confidence 999999998 556877777776665542100 06899999999999864 33344444554445443
No 396
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.09 E-value=9.9e-11 Score=116.13 Aligned_cols=139 Identities=14% Similarity=0.140 Sum_probs=73.8
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCC-CCCCCC--------CCCCcccEEEEEEEcCCCeEEEEEEecCCh-------hHH
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGR-PFSDNY--------TPTTDERYAVNVVDQPGGTKKTVVLREIPE-------EAV 490 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~-------~~~ 490 (573)
-.++|+|+|++|||||||+++|.+. .+.... .++...+.....+...+....+.+|||+|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4589999999999999999999885 333222 011111111111222323457889999997 332
Q ss_pred Hhhhc------------------cccccccccEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCc
Q 008219 491 AKLLS------------------NKDSLAACDIAVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLD 551 (573)
Q Consensus 491 ~~~~~------------------~~~~~~~~d~vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 551 (573)
..+.. ......++++++++.+.+. .+|+... ..+..+ .. ++|+++|+||+|+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l---~~----~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI---HN----KVNIVPVIAKADTL 168 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH---TT----TSCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH---Hh----cCCEEEEEEeCCCC
Confidence 22200 0011123455565555432 2344443 222322 21 68999999999997
Q ss_pred ccc---cchhhHHHHHHHcCCccCC
Q 008219 552 SFA---MAIQDSTRVFTFLVMVLYK 573 (573)
Q Consensus 552 ~~~---~~~~~~~~~~~~~~~~~~k 573 (573)
..+ ...+++.++++++++++|.
T Consensus 169 ~~~e~~~~~~~~~~~~~~~~~~~~e 193 (301)
T 2qnr_A 169 TLKERERLKKRILDEIEEHNIKIYH 193 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEe
Confidence 643 2356888899999998873
No 397
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.09 E-value=5.6e-10 Score=112.44 Aligned_cols=153 Identities=11% Similarity=0.083 Sum_probs=89.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhc------CCC--CCCCCCCC-------CCee-ec----------------------
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAA------DTF--PANVPPVL-------PPTR-LP---------------------- 55 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~------~~~--~~~~~~~~-------~~~~-~~---------------------- 55 (573)
.+...|+|+|++|||||||+|.|.+ +.. ....+... +..+ +.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4567899999999999999999983 221 11011000 0000 00
Q ss_pred --------ccccCCceeEEEEeCCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 008219 56 --------EDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGC 127 (573)
Q Consensus 56 --------~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~N 127 (573)
..+...++.+.|+||+|...... .....+|++++|+|+......+.+.. . +. ..|.++|+|
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~-~---i~----~~~~ivvlN 201 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKK-G---IF----ELADMIAVN 201 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCT-T---HH----HHCSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHH-H---Hh----ccccEEEEE
Confidence 00223578899999999764322 34578999999999764432211110 0 11 246688889
Q ss_pred CCCCCCCcccccHHHHHHHHHHHh---c-----ccCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 128 KLDLRDENQQVSLEQVMMPIMQQF---R-----EIETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 128 K~D~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
|+|+... ... .......+...+ . ...+++.+||+++.|++++++.+.+..
T Consensus 202 K~Dl~~~-~~~-s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 202 KADDGDG-ERR-ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCSTTCC-HHH-HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred chhccCc-hhH-HHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9997543 111 111112222211 1 023789999999999999999988754
No 398
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.03 E-value=7.7e-11 Score=117.03 Aligned_cols=115 Identities=16% Similarity=0.072 Sum_probs=90.5
Q ss_pred HHHHHhhCCCCC-CCCCCCCcccEEEEEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChh-hHHH
Q 008219 443 VLLNSFLGRPFS-DNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDES-SWKR 520 (573)
Q Consensus 443 sLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~-s~~~ 520 (573)
+|+++++.+.+. ..+.+|.+..+.. ....+. ++.+||+ ++++..+ ++.+++++|++++|||++++. +|..
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~---~~~~~~-~~~iwD~--qer~~~l--~~~~~~~ad~vilV~D~~~~~~s~~~ 103 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEY---TPDETG-SGVIENV--LHRKNLL--TKPHVANVDQVILVVTVKMPETSTYI 103 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEE---ECCCSS-SEEEEEE--CCCSCEE--TTTTEESCCEEEEEECSSTTCCCHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEE---EEcCCC-eEEEEEE--cccccee--eccccccCCEEEEEEeCCCCCCCHHH
Confidence 689999999988 7888888854442 232222 6889999 8888888 889999999999999999987 7999
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcC--CccC
Q 008219 521 ATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV--MVLY 572 (573)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~ 572 (573)
++.|+..+... ++|++||+||+||...+. .++++++++.++ +++|
T Consensus 104 l~~~l~~~~~~------~~piilv~NK~DL~~~~~-v~~~~~~~~~~~~~~~~~ 150 (301)
T 1u0l_A 104 IDKFLVLAEKN------ELETVMVINKMDLYDEDD-LRKVRELEEIYSGLYPIV 150 (301)
T ss_dssp HHHHHHHHHHT------TCEEEEEECCGGGCCHHH-HHHHHHHHHHHTTTSCEE
T ss_pred HHHHHHHHHHC------CCCEEEEEeHHHcCCchh-HHHHHHHHHHHhhhCcEE
Confidence 99999877652 799999999999976442 245677777776 5543
No 399
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.98 E-value=7.4e-10 Score=112.24 Aligned_cols=86 Identities=15% Similarity=0.020 Sum_probs=55.2
Q ss_pred EEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCC-------------------CeEEEEEEecCChhH
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPG-------------------GTKKTVVLREIPEEA 489 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~dt~G~~~ 489 (573)
++|+++|.||||||||+|+|.+........+..|....+..+...+ ....+.+|||+|...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999998653222222223333333333321 124688999999754
Q ss_pred HHh----hh-ccccccccccEEEEEEeCCC
Q 008219 490 VAK----LL-SNKDSLAACDIAVFVHDSSD 514 (573)
Q Consensus 490 ~~~----~~-~~~~~~~~~d~vilv~D~~~ 514 (573)
..+ +- .....++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 311 10 01235789999999999986
No 400
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.92 E-value=2.7e-09 Score=107.64 Aligned_cols=75 Identities=9% Similarity=-0.028 Sum_probs=63.8
Q ss_pred CeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCC----------ChhhHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 008219 475 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSS----------DESSWKRATELLVEVASYGEDTGFEVPCLIV 544 (573)
Q Consensus 475 ~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv 544 (573)
+...+.+|||+|++.++.+ +..++++++++|+|||++ +..+|++...|+..+....... ++|++||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~--~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~--~~piiLv 256 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRK--WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE--KTSFMLF 256 (354)
T ss_dssp ---EEEEEEECCSTTGGGG--TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGS--SCEEEEE
T ss_pred cceeeEEEECCCchhhhHH--HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccC--CCeEEEE
Confidence 4568999999999999999 999999999999999998 7889999999998887653222 7999999
Q ss_pred EeCCCCccc
Q 008219 545 AAKDDLDSF 553 (573)
Q Consensus 545 ~nK~Dl~~~ 553 (573)
+||+|+...
T Consensus 257 gNK~DL~~~ 265 (354)
T 2xtz_A 257 LNKFDIFEK 265 (354)
T ss_dssp EECHHHHHH
T ss_pred EECcchhhh
Confidence 999998644
No 401
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.90 E-value=5.9e-09 Score=106.40 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=69.0
Q ss_pred EEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCC----------hhhHHHHHHHHHHHHhcCCCCCC
Q 008219 468 NVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSD----------ESSWKRATELLVEVASYGEDTGF 537 (573)
Q Consensus 468 ~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~----------~~s~~~~~~~~~~~~~~~~~~~~ 537 (573)
..+.+. ...+.+|||+|++.++.+ +..++++++++|+|||+++ ..+|.....|+..+.......
T Consensus 210 ~~~~~~--~v~l~iwDtaGQe~~r~~--w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~-- 283 (402)
T 1azs_C 210 TKFQVD--KVNFHMFDVGGQRDERRK--WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR-- 283 (402)
T ss_dssp EEEEET--TEEEEEEEECCSGGGGGG--GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS--
T ss_pred EEeecC--Cccceecccchhhhhhhh--hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC--
Confidence 344444 478999999999999999 9999999999999999999 889999999999988753322
Q ss_pred CCcEEEEEeCCCCcccc
Q 008219 538 EVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 538 ~~p~ilv~nK~Dl~~~~ 554 (573)
++|++||+||+|+...+
T Consensus 284 ~~piiLvgNK~DL~~~k 300 (402)
T 1azs_C 284 TISVILFLNKQDLLAEK 300 (402)
T ss_dssp SCCEEEEEECHHHHHHH
T ss_pred CCeEEEEEEChhhhhhh
Confidence 89999999999986543
No 402
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.88 E-value=2e-09 Score=109.37 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=49.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCC-CeeecccccCC---------------ceeEEEEeCCCCccc
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLP-PTRLPEDFYPD---------------RVPITIIDTPSSVED 76 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~-~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 76 (573)
...++|+|+|.||||||||+|+|++..+. .++|++.- ...-.+.+... ...+.+|||||+...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 55789999999999999999999987642 22333211 11111111110 235999999998765
Q ss_pred hh-------hhHhhhccCCEEEEEEeCCCcccHHH
Q 008219 77 RG-------KLGEELRRADAVVLTYACDRPETLDE 104 (573)
Q Consensus 77 ~~-------~~~~~~~~ad~il~v~D~~~~~s~~~ 104 (573)
.. ....+++.+|++++|+|+++..++.+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~ 134 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH 134 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence 43 34577899999999999987655544
No 403
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.86 E-value=1.1e-09 Score=107.84 Aligned_cols=89 Identities=17% Similarity=0.254 Sum_probs=56.5
Q ss_pred hhHhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc-CeE
Q 008219 79 KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI-ETC 157 (573)
Q Consensus 79 ~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 157 (573)
.....+.++|.+++|+|+.++..-.+....++...... ++|.++|+||+|+.... ...+....+.+.|... .++
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~---~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQ---DTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCH---HHHHHHHHHHHHHHHHTCCE
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchh---hhHHHHHHHHHHHHhCCCeE
Confidence 34457899999999999987654443332344433333 89999999999998751 1001123333333211 278
Q ss_pred EEecCCCCCCchhHH
Q 008219 158 IECSALKQIQVPEVF 172 (573)
Q Consensus 158 ~~~Sa~~~~gi~~l~ 172 (573)
+.+||.++.|+++|+
T Consensus 154 ~~~sa~~~~g~~~L~ 168 (307)
T 1t9h_A 154 YLTSSKDQDSLADII 168 (307)
T ss_dssp EECCHHHHTTCTTTG
T ss_pred EEEecCCCCCHHHHH
Confidence 999998888776543
No 404
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.86 E-value=8.2e-09 Score=104.51 Aligned_cols=80 Identities=10% Similarity=0.053 Sum_probs=60.9
Q ss_pred EEEEcCCCeEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCC----------hhhHHHHHHHHHHHHhcCCCCCC
Q 008219 468 NVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSD----------ESSWKRATELLVEVASYGEDTGF 537 (573)
Q Consensus 468 ~~~~~~~~~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~----------~~s~~~~~~~~~~~~~~~~~~~~ 537 (573)
..+... ...+.+|||+|++.++.+ +..++++++++|+|||+++ ..+|.+...|+..+.......
T Consensus 194 ~~~~~~--~~~l~i~Dt~Gq~~~r~~--w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~-- 267 (362)
T 1zcb_A 194 YDFEIK--NVPFKMVDVGGQRSERKR--WFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS-- 267 (362)
T ss_dssp EEEEET--TEEEEEEEECC---------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT--
T ss_pred EEeeeC--CeEEEEEeccchhhhhhh--HHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC--
Confidence 344443 478999999999999999 9999999999999999999 778999999998887653222
Q ss_pred CCcEEEEEeCCCCccc
Q 008219 538 EVPCLIVAAKDDLDSF 553 (573)
Q Consensus 538 ~~p~ilv~nK~Dl~~~ 553 (573)
++|+|||+||+|+...
T Consensus 268 ~~piILv~NK~DL~~~ 283 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEE 283 (362)
T ss_dssp TSEEEEEEECHHHHHH
T ss_pred CCCEEEEEEChhhhhh
Confidence 8999999999999643
No 405
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.80 E-value=2.6e-09 Score=108.60 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=51.1
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEEEEEEEcCCC---------------eEEEEEEecCChhHHH
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGG---------------TKKTVVLREIPEEAVA 491 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~dt~G~~~~~ 491 (573)
..++|+++|.+|||||||+|+|.+........+..|.......+.+++. ...+.+|||+|.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3468999999999999999999998764333344444444455555532 1258899999976544
Q ss_pred h----hh-ccccccccccEEEEEEeCCChhhH
Q 008219 492 K----LL-SNKDSLAACDIAVFVHDSSDESSW 518 (573)
Q Consensus 492 ~----~~-~~~~~~~~~d~vilv~D~~~~~s~ 518 (573)
+ +. ....+++.+|++++|+|+++..++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC------
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 3 10 034567899999999999865443
No 406
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.78 E-value=1.7e-08 Score=108.05 Aligned_cols=117 Identities=15% Similarity=0.063 Sum_probs=79.7
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCC------------------CC----CCCCCCCcccEEEEEEEcCCCeEEEEEEec
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRP------------------FS----DNYTPTTDERYAVNVVDQPGGTKKTVVLRE 484 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt 484 (573)
+.-+|+|||..++|||||..+|+... .. ......++.......+.+ +..++.|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY--RDRVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE--TTEEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE--CCEEEEEEeC
Confidence 34689999999999999999996210 00 011112222233334444 3578999999
Q ss_pred CChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 485 IPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 485 ~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
+|+..|..- ..+.++-+|++++|+|+..+-.-+....| ..+..+ ++|+++++||+|....+
T Consensus 108 PGHvDF~~E--v~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~------~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 108 PGHQDFSED--TYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR------ATPVMTFVNKMDREALH 168 (548)
T ss_dssp CCGGGCSHH--HHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT------TCCEEEEEECTTSCCCC
T ss_pred CCcHHHHHH--HHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh------CCceEEEEecccchhcc
Confidence 999887765 66778999999999999988444333334 333443 89999999999987643
No 407
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.78 E-value=2.8e-08 Score=108.88 Aligned_cols=116 Identities=20% Similarity=0.135 Sum_probs=72.0
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCCCcccEE-----------------------------------------
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYA----------------------------------------- 466 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 466 (573)
..+|+|+|.+|+|||||+|+|+|..+-...... .|+..
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 358999999999999999999998763222111 11110
Q ss_pred -----------EEEEEcCCCeEEEEEEecCChh-------------HHHhhhcccccc-ccccEEEEEEeCCChhhHHHH
Q 008219 467 -----------VNVVDQPGGTKKTVVLREIPEE-------------AVAKLLSNKDSL-AACDIAVFVHDSSDESSWKRA 521 (573)
Q Consensus 467 -----------~~~~~~~~~~~~~~i~dt~G~~-------------~~~~~~~~~~~~-~~~d~vilv~D~~~~~s~~~~ 521 (573)
.-.+..+ +...+.++||+|.. .+..+ ...++ ..+|++++|+|++....-...
T Consensus 130 g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~l--v~~yi~~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM--LMQFVTKENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp CSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHH--HHHHHTSTTEEEEEEEETTSCSSSCHH
T ss_pred CCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHH--HHHHHhcCCcEEEEEEcCCCCcchhHH
Confidence 0011112 22357799999932 23333 22333 578999999999875322222
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 522 TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
...+..+... +.|+++|.||+|+...
T Consensus 207 l~ll~~L~~~------g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 207 LKIAKEVDPQ------GQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHHHHHCTT------CSSEEEEEECTTSSCT
T ss_pred HHHHHHHHhc------CCCEEEEEeCcccCCc
Confidence 2333444322 7999999999999754
No 408
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.77 E-value=5.1e-10 Score=114.17 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=84.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC-----CC--CCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhhH-------
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAAD-----TF--PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLG------- 81 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------- 81 (573)
..+|+++|.+|||||||+|+|++. .. +...|+ +|+....+... ..+.++||||.........
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~g---tT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPG---TTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTT---SSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCC---eEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 457999999999999999999986 21 222444 33322222211 2379999999864432111
Q ss_pred hhh---ccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcccCeEE
Q 008219 82 EEL---RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCI 158 (573)
Q Consensus 82 ~~~---~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (573)
..+ +..|.++++++......+..+. .+..+. ..+.|+++|+||+|.... ...+...+.+.+.++. .+.
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~--~l~~l~--~~~~~~~~v~~k~d~~~~---~~~~~~~~~~~~~~g~--~l~ 308 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLA--RLDYIK--GGRRSFVCYMANELTVHR---TKLEKADSLYANQLGE--LLS 308 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTE--EEEEEE--SSSEEEEEEECTTSCEEE---EEGGGHHHHHHHHBTT--TBC
T ss_pred HHHhcccccCceEEEEcCCceEEECCEE--EEEEcc--CCCceEEEEecCCccccc---ccHHHHHHHHHHhcCC--ccC
Confidence 223 7789999999964321111111 111222 237899999999998764 2334455566666664 445
Q ss_pred EecCCCCCCch
Q 008219 159 ECSALKQIQVP 169 (573)
Q Consensus 159 ~~Sa~~~~gi~ 169 (573)
+.++....++.
T Consensus 309 p~~~~~~~~~~ 319 (369)
T 3ec1_A 309 PPSKRYAAEFP 319 (369)
T ss_dssp SSCGGGTTTCC
T ss_pred CCCchhhhhcc
Confidence 55555544443
No 409
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.75 E-value=6.8e-08 Score=97.02 Aligned_cols=83 Identities=23% Similarity=0.242 Sum_probs=52.3
Q ss_pred hhccCCEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhccc-CeEEEe
Q 008219 83 ELRRADAVVLTYACDRPE-TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI-ETCIEC 160 (573)
Q Consensus 83 ~~~~ad~il~v~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 160 (573)
.+.++|.+++|.+. ++. +...++ .++-..... ++|.+||+||+|+.... ..+....+...|... .+++.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~-r~L~~a~~~--~~~~iivlNK~DL~~~~----~~~~~~~~~~~y~~~G~~v~~~ 198 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIID-RYLVGCETL--QVEPLIVLNKIDLLDDE----GMDFVNEQMDIYRNIGYRVLMV 198 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHH-HHHHHHHHH--TCEEEEEEECGGGCCHH----HHHHHHHHHHHHHTTTCCEEEC
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHH-HHHHHHHhc--CCCEEEEEECccCCCch----hHHHHHHHHHHHHhCCCcEEEE
Confidence 47899999988665 454 333333 344333333 78999999999998751 111123333333221 278999
Q ss_pred cCCCCCCchhHHH
Q 008219 161 SALKQIQVPEVFY 173 (573)
Q Consensus 161 Sa~~~~gi~~l~~ 173 (573)
||.++.|++++..
T Consensus 199 Sa~~~~gl~~L~~ 211 (358)
T 2rcn_A 199 SSHTQDGLKPLEE 211 (358)
T ss_dssp BTTTTBTHHHHHH
T ss_pred ecCCCcCHHHHHH
Confidence 9999999876553
No 410
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.74 E-value=2.9e-10 Score=115.85 Aligned_cols=127 Identities=14% Similarity=0.091 Sum_probs=75.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC--------CCCCCCCCCCeeecccccCCceeEEEEeCCCCccchhhh----H--
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTF--------PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKL----G-- 81 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----~-- 81 (573)
..+|+++|.+|||||||+|+|++... +...|+ +|+....+... ..+.++||||........ .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~g---tT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPG---TTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC-------CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCC---eecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHH
Confidence 45799999999999999999998531 122333 33322222211 138999999986443211 1
Q ss_pred --h--hhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccHHHHHHHHHHHhcc
Q 008219 82 --E--ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE 153 (573)
Q Consensus 82 --~--~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 153 (573)
. ..+..+.++++++.........+. .+..+.. .+.|+++|+||+|.... ...+...+.+.+.++.
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~--~~d~l~~--~~~~~~~v~nk~d~~~~---~~~~~~~~~~~~~~g~ 304 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLA--RFDYVSG--GRRAFTCHFSNRLTIHR---TKLEKADELYKNHAGD 304 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTE--EEEEEES--SSEEEEEEECTTSCEEE---EEHHHHHHHHHHHBTT
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceE--EEEEecC--CCceEEEEecCcccccc---ccHHHHHHHHHHHhCC
Confidence 1 146788899999863321111111 1112222 37899999999998765 3445555566666663
No 411
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.70 E-value=2.2e-08 Score=91.20 Aligned_cols=106 Identities=7% Similarity=-0.003 Sum_probs=67.8
Q ss_pred CCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHH---HHHHHhc--CCCCcEEEEEeCC-CCCCCcccccHHHH
Q 008219 70 TPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFW---LPELRRL--EVKVPVIVVGCKL-DLRDENQQVSLEQV 143 (573)
Q Consensus 70 t~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~---~~~l~~~--~~~~piilv~NK~-D~~~~~~~~~~~~~ 143 (573)
.+|+......+..|+.++|++|||+|.+|+..++ ....+ ...+... -.+.|++|.+||. |+... .+..+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A---ms~~EI 184 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCFYL 184 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB---CCHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC---CCHHHH
Confidence 3477788889999999999999999999986654 33334 3333332 1578999999995 67654 333333
Q ss_pred HHHHHH-HhcccCeEEEecCCCCCCchhHHHHHHHHH
Q 008219 144 MMPIMQ-QFREIETCIECSALKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 144 ~~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 179 (573)
.+.+.. .+...-.+..|||.+|.|+.+-++|+.+.+
T Consensus 185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 222211 111112689999999999999999998754
No 412
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.70 E-value=3.2e-07 Score=94.13 Aligned_cols=158 Identities=15% Similarity=0.071 Sum_probs=87.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCCeeecccccCCc-eeEEEEeCCCCccchhhhH-----hhhcc
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN---VPPVLPPTRLPEDFYPDR-VPITIIDTPSSVEDRGKLG-----EELRR 86 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~-----~~~~~ 86 (573)
...|+|+|++|||||||+|.|++...... ..+....++....+.... ..+.++|++|......... ..+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 45899999999999999999998432111 111011111111111112 2589999999643222122 22445
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC---------CcccccHHHHHHHHH----HHhc-
Q 008219 87 ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD---------ENQQVSLEQVMMPIM----QQFR- 152 (573)
Q Consensus 87 ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~---------~~~~~~~~~~~~~~~----~~~~- 152 (573)
.+.+++ +|... ++..+..+...+... ++|+++|.||.|+.- ........+.+..+. ...+
T Consensus 149 ~~~~~~-lS~G~---~~kqrv~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 149 YDFFII-ISATR---FKKNDIDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp CSEEEE-EESSC---CCHHHHHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCeEE-eCCCC---ccHHHHHHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 566665 77542 122222255556554 789999999999641 000111122222222 1111
Q ss_pred ccCeEEEecC--CCCCCchhHHHHHHHHH
Q 008219 153 EIETCIECSA--LKQIQVPEVFYYAQKAV 179 (573)
Q Consensus 153 ~~~~~~~~Sa--~~~~gi~~l~~~i~~~~ 179 (573)
....++.+|+ ..+.|++++.+.+.+.+
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 1236799999 56677999999998754
No 413
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.69 E-value=6.7e-09 Score=98.04 Aligned_cols=125 Identities=10% Similarity=0.103 Sum_probs=70.6
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCC------CCCCCcc--------cEEEEEEEcC----------------CCe
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDN------YTPTTDE--------RYAVNVVDQP----------------GGT 476 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~------~~~~~~~--------~~~~~~~~~~----------------~~~ 476 (573)
...+|+++|.+|||||||+++|++...... ..+..+. ......+... ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457899999999999999999986521110 0111000 0111111111 023
Q ss_pred EEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-c
Q 008219 477 KKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-M 555 (573)
Q Consensus 477 ~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~ 555 (573)
..+++|||+|.-... ..+...++.+++|+|+++... ....+.. . . +.|+++|+||+|+.... .
T Consensus 109 ~d~iiidt~G~~~~~-----~~~~~~~~~~i~vvd~~~~~~--~~~~~~~-~--~------~~~~iiv~NK~Dl~~~~~~ 172 (221)
T 2wsm_A 109 CDLLLIENVGNLICP-----VDFDLGENYRVVMVSVTEGDD--VVEKHPE-I--F------RVADLIVINKVALAEAVGA 172 (221)
T ss_dssp CSEEEEEEEEBSSGG-----GGCCCSCSEEEEEEEGGGCTT--HHHHCHH-H--H------HTCSEEEEECGGGHHHHTC
T ss_pred CCEEEEeCCCCCCCC-----chhccccCcEEEEEeCCCcch--hhhhhhh-h--h------hcCCEEEEecccCCcchhh
Confidence 467899999951101 111135788999999987532 1111111 1 1 57899999999997542 3
Q ss_pred chhhHHHHHHHc
Q 008219 556 AIQDSTRVFTFL 567 (573)
Q Consensus 556 ~~~~~~~~~~~~ 567 (573)
..++..++++++
T Consensus 173 ~~~~~~~~~~~~ 184 (221)
T 2wsm_A 173 DVEKMKADAKLI 184 (221)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 345555555554
No 414
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.68 E-value=3e-09 Score=107.71 Aligned_cols=61 Identities=11% Similarity=0.115 Sum_probs=35.9
Q ss_pred eEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 476 TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 476 ~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
...+.++||+|..... ......+|++++|+|++++...+.+.. .+ . ..|.++|+||+|+..
T Consensus 166 ~~~~iliDT~Gi~~~~-----~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---l-----~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 166 GYDIILIETVGVGQSE-----FAVADMVDMFVLLLPPAGGDELQGIKR---GI---I-----EMADLVAVTKSDGDL 226 (349)
T ss_dssp TCSEEEEECCCC--CH-----HHHHTTCSEEEEEECCC------------------C-----CSCSEEEECCCSGGG
T ss_pred CCCEEEEECCCcchhh-----hhHHhhCCEEEEEEcCCcchhHHHhHH---HH---H-----hcCCEEEEeeecCCC
Confidence 3467899999953111 112478999999999987633221111 11 1 568899999999975
No 415
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.67 E-value=4.3e-08 Score=103.10 Aligned_cols=152 Identities=17% Similarity=0.164 Sum_probs=87.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHh------cCCC--C-CC--CCCC------------CC-----Ceeecc--------c
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAA------ADTF--P-AN--VPPV------------LP-----PTRLPE--------D 57 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~------~~~~--~-~~--~~~~------------~~-----~~~~~~--------~ 57 (573)
.+...|+|+|.+||||||++++|. +.+. + .+ .++. .+ +...+. .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999998 4331 0 00 0000 00 000000 0
Q ss_pred ccCCceeEEEEeCCCCccchh-hhH---hh--hccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcE-EEEEeCCC
Q 008219 58 FYPDRVPITIIDTPSSVEDRG-KLG---EE--LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPV-IVVGCKLD 130 (573)
Q Consensus 58 ~~~~~~~~~i~Dt~G~~~~~~-~~~---~~--~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~NK~D 130 (573)
+...++.+.|+||||...... ... .. +..+|.+++|+|++..... .. ....+.. .+|+ ++|+||+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~--~~--~a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC--EA--QAKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH--HH--HHHHHHH---HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH--HH--HHHHHHh---hcCceEEEEeCCc
Confidence 112567899999999764321 111 11 2378999999998875432 11 2333333 2675 89999999
Q ss_pred CCCCcccccHHHHHHHHHHHhcc----------------cCeEEEecCCCCCC-chhHHHHHHHH
Q 008219 131 LRDENQQVSLEQVMMPIMQQFRE----------------IETCIECSALKQIQ-VPEVFYYAQKA 178 (573)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~g-i~~l~~~i~~~ 178 (573)
..... . ....+...++. ..+.+.+|+..|.| +.+|++.+.+.
T Consensus 252 ~~~~~-g-----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKG-G-----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCC-T-----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccch-H-----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 87541 1 11112223221 11334579999999 99999988764
No 416
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.67 E-value=7.5e-09 Score=105.21 Aligned_cols=62 Identities=10% Similarity=0.047 Sum_probs=41.9
Q ss_pred eEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 476 TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 476 ~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
...+.|+||+|...... ..+..+|++++|+|++..+.++.+. .... +.|+++|+||+|+...
T Consensus 171 ~~~~iiiDTpGi~~~~~-----~~~~~aD~vl~V~d~~~~~~~~~l~-------~~~~----~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 171 GFDVILIETVGVGQSEV-----AVANMVDTFVLLTLARTGDQLQGIK-------KGVL----ELADIVVVNKADGEHH 232 (355)
T ss_dssp TCCEEEEEECSCSSHHH-----HHHTTCSEEEEEEESSTTCTTTTCC-------TTSG----GGCSEEEEECCCGGGH
T ss_pred CCCEEEEeCCCCCcHHH-----HHHHhCCEEEEEECCCCCccHHHHH-------HhHh----hcCCEEEEECCCCcCh
Confidence 35788999999532221 2248999999999987664442221 1111 5799999999999754
No 417
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.57 E-value=1.4e-07 Score=96.73 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=63.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCC-CCCCee--ecccccCCc--eeEEEEeCCCCccchh------------
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPP-VLPPTR--LPEDFYPDR--VPITIIDTPSSVEDRG------------ 78 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~-~~~-~~~~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~------------ 78 (573)
++|+|+|++|+|||||+|.|++..+... ... ....+. +...+...+ ..+.++|++|......
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 4599999999999999999998754322 111 111222 222222222 3689999999754211
Q ss_pred --hhHhh-------------hccC--C-EEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 008219 79 --KLGEE-------------LRRA--D-AVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (573)
Q Consensus 79 --~~~~~-------------~~~a--d-~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~ 134 (573)
....+ ..++ | +++|+.|.....+..++ .+++.|. .++|+|+|.||+|....
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence 11111 1122 2 46667775544333332 3555554 48999999999998765
No 418
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.53 E-value=3.4e-07 Score=101.41 Aligned_cols=118 Identities=17% Similarity=0.051 Sum_probs=77.7
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCC--------CCCC----------CCCCCCcccEEEEEEEcCC-----CeEEEEEEe
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGR--------PFSD----------NYTPTTDERYAVNVVDQPG-----GTKKTVVLR 483 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~--------~~~~----------~~~~~~~~~~~~~~~~~~~-----~~~~~~i~d 483 (573)
+.-+|+|+|...+|||||..+|+.. .... ....-+|..-..-.+.+.+ +...+.++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 4568999999999999999999721 1100 0011112222223343332 257899999
Q ss_pred cCChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 484 EIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 484 t~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
|+|+-.|..- ....++-+|++++|+|+..+-.-+....| ..+... ++|.++++||+|....
T Consensus 92 TPGHvDF~~E--v~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~------~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 92 TPGHVDFTIE--VERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY------GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCSCTTCHHH--HHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH------TCCEEEEEECSSSTTC
T ss_pred CCCCcccHHH--HHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc------CCCeEEEEccccccCc
Confidence 9999888766 66788999999999999987433333333 333333 8999999999998654
No 419
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.52 E-value=8.8e-10 Score=104.58 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=24.9
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCCCCC
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGRPFS 454 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~ 454 (573)
...++|+|+|.+|||||||+++|+...+.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 35689999999999999999999976543
No 420
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.52 E-value=3e-07 Score=89.28 Aligned_cols=115 Identities=21% Similarity=0.269 Sum_probs=66.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCCCCCCeeecccccCC--ceeEEEEeCCCCccchh------
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN---------VPPVLPPTRLPEDFYPD--RVPITIIDTPSSVEDRG------ 78 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~------ 78 (573)
.++|+|+|++|+|||||+|.|++...... .+.......+...+... ...+.++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999987442111 11111011111112222 23689999999643110
Q ss_pred hhH----------------------hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 008219 79 KLG----------------------EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (573)
Q Consensus 79 ~~~----------------------~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~~~ 134 (573)
... ..+..+++.++++|... ..+...+..++..+.. .+++|+|.||+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~---~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK---VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh---cCcEEEEEeccccCCH
Confidence 000 11335789999999442 2233333346666655 3899999999998765
No 421
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.49 E-value=3.1e-08 Score=96.11 Aligned_cols=69 Identities=12% Similarity=0.026 Sum_probs=42.6
Q ss_pred EEEEEEecCChhHHHhhhccc------cccccccEEEEEEeCCChhhHHHHH---HHHHHHHhcCCCCCCCCcEEEEEeC
Q 008219 477 KKTVVLREIPEEAVAKLLSNK------DSLAACDIAVFVHDSSDESSWKRAT---ELLVEVASYGEDTGFEVPCLIVAAK 547 (573)
Q Consensus 477 ~~~~i~dt~G~~~~~~~~~~~------~~~~~~d~vilv~D~~~~~s~~~~~---~~~~~~~~~~~~~~~~~p~ilv~nK 547 (573)
..+++|||+|....... .. ..+.. +++++++|++...+..... .+........ ++|+++|+||
T Consensus 109 ~d~iiiDtpG~~~~~~~--~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~~iv~NK 180 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLF--HEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL-----GATTIPALNK 180 (262)
T ss_dssp CSEEEEECCSSHHHHHH--SHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH-----TSCEEEEECC
T ss_pred CCEEEEeCCCccchhhh--hhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc-----CCCeEEEEec
Confidence 36889999998765433 21 24466 8999999986433222222 1111111111 7899999999
Q ss_pred CCCccc
Q 008219 548 DDLDSF 553 (573)
Q Consensus 548 ~Dl~~~ 553 (573)
+|+...
T Consensus 181 ~D~~~~ 186 (262)
T 1yrb_A 181 VDLLSE 186 (262)
T ss_dssp GGGCCH
T ss_pred cccccc
Confidence 998754
No 422
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.49 E-value=3.1e-08 Score=99.98 Aligned_cols=62 Identities=18% Similarity=0.159 Sum_probs=38.8
Q ss_pred eEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 476 TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 476 ~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
...+.++||+|....... ..+.+|++++|+|++....++.+.. .. . +.|.++|+||+|+...
T Consensus 148 ~~~i~liDTpG~~~~~~~-----~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--~------~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE-----VARMVDCFISLQIAGGGDDLQGIKK---GL--M------EVADLIVINKDDGDNH 209 (341)
T ss_dssp TCSEEEEEEECCTTHHHH-----HHTTCSEEEEEECC------CCCCH---HH--H------HHCSEEEECCCCTTCH
T ss_pred CCCEEEEeCCCccchHHH-----HHHhCCEEEEEEeCCccHHHHHHHH---hh--h------cccCEEEEECCCCCCh
Confidence 357889999996544332 2489999999999976533211111 11 1 4688999999999753
No 423
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.48 E-value=2.1e-07 Score=89.12 Aligned_cols=107 Identities=7% Similarity=-0.010 Sum_probs=72.8
Q ss_pred CCCCccchhhhHhhhccCCEEEEEEeCCCcccHHHHHHHH---HHHHHhc--CCCCcEEEEEeC-CCCCCCcccccHHHH
Q 008219 70 TPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFW---LPELRRL--EVKVPVIVVGCK-LDLRDENQQVSLEQV 143 (573)
Q Consensus 70 t~G~~~~~~~~~~~~~~ad~il~v~D~~~~~s~~~~~~~~---~~~l~~~--~~~~piilv~NK-~D~~~~~~~~~~~~~ 143 (573)
.+|+......+..|+.++|++|||+|.+|++.++ ....+ ...+... -.+.|++|.+|| -|+... .+..+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---ms~~EI 269 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCFYL 269 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---CCHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---CCHHHH
Confidence 4678888899999999999999999999987655 22222 2334221 248999999997 588665 333333
Q ss_pred HHHHHH-HhcccCeEEEecCCCCCCchhHHHHHHHHHh
Q 008219 144 MMPIMQ-QFREIETCIECSALKQIQVPEVFYYAQKAVL 180 (573)
Q Consensus 144 ~~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 180 (573)
.+.+.. .+...-.+..|||.+|+|+.+-++++.+.+.
T Consensus 270 ~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 222211 1111126899999999999999999998653
No 424
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.45 E-value=4.6e-07 Score=92.32 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=57.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCC-eeecccccC------------C---ceeEEEEeCCCCcc
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPP-TRLPEDFYP------------D---RVPITIIDTPSSVE 75 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~--~~~~~~~~~~-~~~~~~~~~------------~---~~~~~i~Dt~G~~~ 75 (573)
.+..+|+|+|+||||||||+|+|++... +.++|++.-. +.-.+.+.+ . +..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4578999999999999999999999664 3335542211 111111111 0 13589999999653
Q ss_pred c-------hhhhHhhhccCCEEEEEEeCCC
Q 008219 76 D-------RGKLGEELRRADAVVLTYACDR 98 (573)
Q Consensus 76 ~-------~~~~~~~~~~ad~il~v~D~~~ 98 (573)
. .......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 2234466889999999999765
No 425
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.39 E-value=8e-08 Score=104.97 Aligned_cols=115 Identities=15% Similarity=0.123 Sum_probs=76.9
Q ss_pred EEEEEEcCCCCChhHHHHHhhC--CCCC---CCCCC-------------CCcccEEEEEEEcCCCeEEEEEEecCChhHH
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLG--RPFS---DNYTP-------------TTDERYAVNVVDQPGGTKKTVVLREIPEEAV 490 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~--~~~~---~~~~~-------------~~~~~~~~~~~~~~~~~~~~~i~dt~G~~~~ 490 (573)
.+|+|+|...+|||||..+|+. +... .+... .+|.......+.+ +..++.++||+|+..|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW--ENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC--SSCBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE--CCEEEEEEECCCcHHH
Confidence 3699999999999999999962 1111 00000 0111112222333 4567889999999888
Q ss_pred HhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 008219 491 AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 554 (573)
Q Consensus 491 ~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 554 (573)
..- ....++-+|++++|+|+..+-.-+... .+..+..+ ++|.++++||+|....+
T Consensus 81 ~~E--v~raL~~~DgavlVVDa~~GV~~qT~~-v~~~a~~~------~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 81 LAE--VYRSLSVLDGAILLISAKDGVQAQTRI-LFHALRKM------GIPTIFFINKIDQNGID 135 (638)
T ss_dssp HHH--HHHHHTTCSEEECCEESSCTTCSHHHH-HHHHHHHH------TCSCEECCEECCSSSCC
T ss_pred HHH--HHHHHHHhCEEEEEEeCCCCCcHHHHH-HHHHHHHc------CCCeEEEEeccccccCC
Confidence 776 667789999999999999873333222 23333333 79999999999987543
No 426
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.38 E-value=8.8e-07 Score=86.02 Aligned_cols=136 Identities=17% Similarity=0.178 Sum_probs=72.9
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCC-------CCCCcc-cEEEEEEEcCC-CeEEEEEEecCChh----------
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-------TPTTDE-RYAVNVVDQPG-GTKKTVVLREIPEE---------- 488 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-------~~~~~~-~~~~~~~~~~~-~~~~~~i~dt~G~~---------- 488 (573)
.++++++|++|+|||||+|.|.|....... ..+.+. ...+..+.... -...+.++|++|-.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 378999999999999999999975433211 111111 11222111111 11256788887620
Q ss_pred H--------HHhh----hc----cccccccccEEEEEEeCC-ChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCC
Q 008219 489 A--------VAKL----LS----NKDSLAACDIAVFVHDSS-DESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDL 550 (573)
Q Consensus 489 ~--------~~~~----~~----~~~~~~~~d~vilv~D~~-~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 550 (573)
. +... +. .+..+.+++++++++|.. .+ +...+ ..+..+.. .+++|+|.||+|.
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~g--L~~lD~~~l~~L~~-------~~~vI~Vi~K~D~ 152 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHS--LRPLDLEFMKHLSK-------VVNIIPVIAKADT 152 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSS--CCHHHHHHHHHHHT-------TSEEEEEETTGGG
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCc--CCHHHHHHHHHHHh-------cCcEEEEEecccc
Confidence 0 1110 00 122445679999999965 32 22233 23333432 4799999999998
Q ss_pred cccccc---hhhHHHHHHHcCCccC
Q 008219 551 DSFAMA---IQDSTRVFTFLVMVLY 572 (573)
Q Consensus 551 ~~~~~~---~~~~~~~~~~~~~~~~ 572 (573)
...... .....+..+.+++.+|
T Consensus 153 lt~~e~~~~k~~i~~~l~~~~i~i~ 177 (270)
T 3sop_A 153 MTLEEKSEFKQRVRKELEVNGIEFY 177 (270)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred CCHHHHHHHHHHHHHHHHHcCcccc
Confidence 754321 3344444556677665
No 427
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.34 E-value=2.3e-06 Score=87.66 Aligned_cols=119 Identities=15% Similarity=0.157 Sum_probs=62.4
Q ss_pred ceEEEEEEcCCCCChhHHHHHhhCCCCCCCC---CCCCcccEEEEEEEcC-CCeEEEEEEecCChh--------------
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY---TPTTDERYAVNVVDQP-GGTKKTVVLREIPEE-------------- 488 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~i~dt~G~~-------------- 488 (573)
..++++|+|++|+|||||+|.|.|....... ..+..+...+..+... +-...+.++|++|-.
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 3468999999999999999999997543211 1122222222222222 122367788987631
Q ss_pred ----HHHhhhcc----c---cccccc--cE-EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 008219 489 ----AVAKLLSN----K---DSLAAC--DI-AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 553 (573)
Q Consensus 489 ----~~~~~~~~----~---~~~~~~--d~-vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 553 (573)
.+..++.. . ..+..+ |+ ++++.|+..+ +...+..+...... ++|+|+|.||+|....
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Dieilk~L~~------~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDLVTMKKLDS------KVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTCS------CSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHHHHHHHHhh------CCCEEEEEcchhccch
Confidence 11111110 0 112233 33 5566676544 33344333222221 8999999999998654
No 428
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.23 E-value=1.3e-06 Score=90.44 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=65.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC------C--CCC-C-C-CC------------------CCCCeeecccc------cC
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAAD------T--FPA-N-V-PP------------------VLPPTRLPEDF------YP 60 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~------~--~~~-~-~-~~------------------~~~~~~~~~~~------~~ 60 (573)
...|+|+|.+||||||+++.|... + ++. + + +. ..++++.+..+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 457999999999999999998762 1 000 0 0 00 00011110000 12
Q ss_pred CceeEEEEeCCCCccchhhh-H-----hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCC-c-EEEEEeCCCCC
Q 008219 61 DRVPITIIDTPSSVEDRGKL-G-----EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKV-P-VIVVGCKLDLR 132 (573)
Q Consensus 61 ~~~~~~i~Dt~G~~~~~~~~-~-----~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~-p-iilv~NK~D~~ 132 (573)
.++.+.|+||||........ . ..+..+|.+++|+|++... + ... ....+. ... | ..+|.||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~-~~~-~~~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q-AGI-QAKAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G-HHH-HHHHHH---TTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H-HHH-HHHHHh---hcccCCeEEEEeCCCCc
Confidence 56789999999976432211 1 1233689999999976543 2 211 222222 245 6 88999999986
Q ss_pred CC
Q 008219 133 DE 134 (573)
Q Consensus 133 ~~ 134 (573)
..
T Consensus 252 ~~ 253 (432)
T 2v3c_C 252 AK 253 (432)
T ss_dssp ST
T ss_pred cc
Confidence 43
No 429
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.21 E-value=8.8e-07 Score=90.20 Aligned_cols=85 Identities=14% Similarity=0.071 Sum_probs=57.2
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCC-CCCCcccEEEEEEEcCCC---------------eEEEEEEecCChhH--
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGG---------------TKKTVVLREIPEEA-- 489 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~~i~dt~G~~~-- 489 (573)
..+|+++|.+|||||||+|+|++....... .|..+.......+.+.+. ...+.+||++|...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 468999999999999999999997763333 333344444444555531 13578999999421
Q ss_pred -----HHhhhccccccccccEEEEEEeCCC
Q 008219 490 -----VAKLLSNKDSLAACDIAVFVHDSSD 514 (573)
Q Consensus 490 -----~~~~~~~~~~~~~~d~vilv~D~~~ 514 (573)
+... ....++.+|++++|+|+.+
T Consensus 100 s~~e~L~~~--fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNA--FLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHH--HHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHH--HHHHHHHHHHHHHHHhccc
Confidence 1111 2234678999999999874
No 430
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.18 E-value=8e-07 Score=89.27 Aligned_cols=61 Identities=8% Similarity=0.049 Sum_probs=35.6
Q ss_pred eEEEEEEecCChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 008219 476 TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 552 (573)
Q Consensus 476 ~~~~~i~dt~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 552 (573)
...+.++||+|...-.. .....+|++++|+|++.....+.+... +. ..|.++|.||+|+..
T Consensus 147 ~~~~iliDT~Gi~~~~~-----~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~--------~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET-----AVADLTDFFLVLMLPGAGDELQGIKKG---IF--------ELADMIAVNKADDGD 207 (337)
T ss_dssp TCCEEEEEECSSSSCHH-----HHHTTSSEEEEEECSCC------CCTT---HH--------HHCSEEEEECCSTTC
T ss_pred CCCEEEEECCCCCcchh-----hHHhhCCEEEEEEcCCCcccHHHHHHH---Hh--------ccccEEEEEchhccC
Confidence 45788999999642111 123689999999998754322111111 11 345577789999753
No 431
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.18 E-value=1.5e-06 Score=85.98 Aligned_cols=78 Identities=18% Similarity=0.096 Sum_probs=61.5
Q ss_pred hhHHHhhhccccccccccEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc-c-hhhHHHH
Q 008219 487 EEAVAKLLSNKDSLAACDIAVFVHDSSDES-SWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM-A-IQDSTRV 563 (573)
Q Consensus 487 ~~~~~~~~~~~~~~~~~d~vilv~D~~~~~-s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~ 563 (573)
++++..+ .+.+++++|++++|+|++++. ++..++.|+..+... ++|+++|+||+|+.+.+. . .++..++
T Consensus 66 ~er~~~l--~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~------~~~~ilV~NK~DL~~~~~v~~~~~~~~~ 137 (302)
T 2yv5_A 66 EERKNLL--IRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF------KVEPVIVFNKIDLLNEEEKKELERWISI 137 (302)
T ss_dssp CCCSCEE--ETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT------TCEEEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred CChHHHH--hHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC------CCCEEEEEEcccCCCccccHHHHHHHHH
Confidence 5667777 677899999999999999986 899999999876653 899999999999976432 2 4555667
Q ss_pred HHHcCCccC
Q 008219 564 FTFLVMVLY 572 (573)
Q Consensus 564 ~~~~~~~~~ 572 (573)
+++++++++
T Consensus 138 ~~~~g~~~~ 146 (302)
T 2yv5_A 138 YRDAGYDVL 146 (302)
T ss_dssp HHHTTCEEE
T ss_pred HHHCCCeEE
Confidence 777776654
No 432
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.18 E-value=1.3e-06 Score=85.28 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=37.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCCCCeeecccccCCceeEEEEeCCCCcc
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPA--NVPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 75 (573)
...++|+++|.||||||||+|+|++..... ..|+ +|+....+.. +..+.++||||...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g---~T~~~~~~~~-~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPG---ITTSQQWVKV-GKELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------CCEEE-TTTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCC---eeeeeEEEEe-CCCEEEEECcCcCC
Confidence 456899999999999999999999876332 2443 3332111211 33689999999753
No 433
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.14 E-value=2.3e-06 Score=91.43 Aligned_cols=64 Identities=17% Similarity=0.083 Sum_probs=43.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeecccc-----cCCceeEEEEeCCCCccc
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVL-PPTRLPEDF-----YPDRVPITIIDTPSSVED 76 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~i~Dt~G~~~~ 76 (573)
..+.++|+|+|.||||||||+|+|++.......+++. +.|.....+ ...+..+.++||||....
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 3466889999999999999999999876432444332 222211111 234678999999998643
No 434
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.14 E-value=1.2e-06 Score=92.12 Aligned_cols=115 Identities=11% Similarity=0.092 Sum_probs=63.3
Q ss_pred ceEEEEEEcCCCCChhHHHHHhh------CCCCCCCC----CCCC-------cccEEEEEEEcC----------------
Q 008219 427 NVFQCFVFGPKKAGKSVLLNSFL------GRPFSDNY----TPTT-------DERYAVNVVDQP---------------- 473 (573)
Q Consensus 427 ~~~ki~vvG~~~vGKSsLi~~l~------~~~~~~~~----~~~~-------~~~~~~~~~~~~---------------- 473 (573)
....|+|+|.+||||||++++|. |.+..... .+.. +.+..+..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999998 54432111 1100 000001111100
Q ss_pred -CCeEEEEEEecCChhH----H-HhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcE-EEEEe
Q 008219 474 -GGTKKTVVLREIPEEA----V-AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPC-LIVAA 546 (573)
Q Consensus 474 -~~~~~~~i~dt~G~~~----~-~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~-ilv~n 546 (573)
.....++|+||+|... + ..+..... ...+|.+++|+|++..... ......+.. .+|+ ++|.|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~-~i~pd~vllVvDa~~g~~~---~~~a~~~~~-------~~~i~gvVlN 248 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVAN-AIQPDNIVYVMDASIGQAC---EAQAKAFKD-------KVDVASVIVT 248 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHH-HHCCSEEEEEEETTCCTTH---HHHHHHHHH-------HHCCCCEEEE
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHh-hhcCceEEEEEeccccccH---HHHHHHHHh-------hcCceEEEEe
Confidence 0335788999999532 1 11100111 2378999999999876431 111222222 2454 78899
Q ss_pred CCCCcc
Q 008219 547 KDDLDS 552 (573)
Q Consensus 547 K~Dl~~ 552 (573)
|+|...
T Consensus 249 K~D~~~ 254 (504)
T 2j37_W 249 KLDGHA 254 (504)
T ss_dssp CTTSCC
T ss_pred CCcccc
Confidence 999874
No 435
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.12 E-value=1.1e-05 Score=83.21 Aligned_cols=141 Identities=13% Similarity=0.098 Sum_probs=80.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhc------CCC---CCC-C-CC----------CCCCee-------ecc--------cc
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAA------DTF---PAN-V-PP----------VLPPTR-------LPE--------DF 58 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~------~~~---~~~-~-~~----------~~~~~~-------~~~--------~~ 58 (573)
+...|+++|.+||||||++..|.. .+. ..+ + ++ ..+... .+. ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998873 221 000 0 00 000000 000 00
Q ss_pred cCCceeEEEEeCCCCccchhhh-H-----hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 008219 59 YPDRVPITIIDTPSSVEDRGKL-G-----EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLR 132 (573)
Q Consensus 59 ~~~~~~~~i~Dt~G~~~~~~~~-~-----~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~~ 132 (573)
...++.+.|+||+|........ . .....+|.+++|+|++....... ....+... -.+..+|.||+|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~----~a~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN----QALAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH----HHHHHHHS--CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH----HHHHHHhh--CCCeEEEEECCCCc
Confidence 1235789999999965432211 1 22446899999999876433222 23334332 24567999999987
Q ss_pred CCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 133 DENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
.. .-....+....+. |+..++. |+++++|
T Consensus 253 ~~------gG~~ls~~~~~g~--PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 253 AK------GGGALSAVAATGA--PIKFIGT--GEKIDDI 281 (443)
T ss_dssp SS------HHHHHHHHHTTCC--CEEEEEC--SSSTTCE
T ss_pred cc------ccHHHHHHHHHCC--CEEEEEc--CCChHHh
Confidence 65 1222333444442 6777775 8887765
No 436
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.03 E-value=2.6e-06 Score=82.33 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeecccccCCceeEEEEeCCCCcc
Q 008219 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75 (573)
Q Consensus 17 ~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 75 (573)
++|+++|.||||||||+|+|.+...... ..+.++|+....+.. +..+.+|||||+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence 6999999999999999999998765322 112223332111221 34689999999754
No 437
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.89 E-value=7.3e-05 Score=76.97 Aligned_cols=140 Identities=17% Similarity=0.152 Sum_probs=78.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhc------CCC--CC-C---------------CCCCC----CCeeecc--------cc
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAA------DTF--PA-N---------------VPPVL----PPTRLPE--------DF 58 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~------~~~--~~-~---------------~~~~~----~~~~~~~--------~~ 58 (573)
+...|+++|++||||||++..|.. .+. .. + ..+.. .....+. ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 456789999999999999998862 211 00 0 00000 0000000 01
Q ss_pred cCCceeEEEEeCCCCcc--ch-hhhH-----hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 008219 59 YPDRVPITIIDTPSSVE--DR-GKLG-----EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLD 130 (573)
Q Consensus 59 ~~~~~~~~i~Dt~G~~~--~~-~~~~-----~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D 130 (573)
...++.+.|+||||... .. .... ...-..|.+++|+|+...+...+ ....+... -.+..+|+||+|
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~----~a~~f~~~--~~~~gVIlTKlD 249 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD----LASRFHQA--SPIGSVIITKMD 249 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH----HHHHHHHH--CSSEEEEEECGG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH----HHHHHhcc--cCCcEEEEeccc
Confidence 13467899999999643 11 1111 11235699999999876533322 33334332 246789999999
Q ss_pred CCCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchh
Q 008219 131 LRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPE 170 (573)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (573)
.... .-....+....+ .|+..++. |+++++
T Consensus 250 ~~a~------~G~als~~~~~g--~Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 250 GTAK------GGGALSAVVATG--ATIKFIGT--GEKIDE 279 (433)
T ss_dssp GCSC------HHHHHHHHHHHT--CEEEEEEC--CSSSSC
T ss_pred cccc------chHHHHHHHHHC--CCEEEEEC--CCChHh
Confidence 7754 112233334444 27777775 777754
No 438
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.83 E-value=4.1e-05 Score=75.23 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=56.3
Q ss_pred CceeEEEEeCCCCcc--chh-hhH-----hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCC
Q 008219 61 DRVPITIIDTPSSVE--DRG-KLG-----EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDL 131 (573)
Q Consensus 61 ~~~~~~i~Dt~G~~~--~~~-~~~-----~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~D~ 131 (573)
.++.+.|+||||... ... ... ..+..+|.+++|+|++.. .+... ..+.+.. ..| ..+|.||+|.
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~-~~~~~~~---~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYD-LASKFNQ---ASKIGTIIITKMDG 251 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHH-HHHHHHH---TCTTEEEEEECGGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHH-HHHHHHh---hCCCCEEEEeCCCC
Confidence 567899999999766 322 221 235579999999997643 22221 2333332 456 7789999997
Q ss_pred CCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 132 RDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
... ......+....+. |+..++ .|++++++
T Consensus 252 ~~~------~g~~~~~~~~~~~--pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 252 TAK------GGGALSAVAATGA--TIKFIG--TGEKIDEL 281 (297)
T ss_dssp CTT------HHHHHHHHHTTTC--CEEEEE--CSSSTTCE
T ss_pred Ccc------hHHHHHHHHHHCc--CEEEEe--CCCChhhc
Confidence 643 1223344455542 666665 56676653
No 439
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.71 E-value=3.4e-05 Score=79.84 Aligned_cols=128 Identities=11% Similarity=0.072 Sum_probs=68.5
Q ss_pred EEEEEEcCCCCChhHHHHHhhCC------CCCC----CCCC-------------------CC-cccEEE----EEEEcCC
Q 008219 429 FQCFVFGPKKAGKSVLLNSFLGR------PFSD----NYTP-------------------TT-DERYAV----NVVDQPG 474 (573)
Q Consensus 429 ~ki~vvG~~~vGKSsLi~~l~~~------~~~~----~~~~-------------------~~-~~~~~~----~~~~~~~ 474 (573)
..|+++|.+||||||+++.|... +... .+.+ .. +++... ..+...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~- 178 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF- 178 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh-
Confidence 35999999999999999999752 1100 0000 00 111100 001111
Q ss_pred CeEEEEEEecCChhH----HHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCC-c-EEEEEeCC
Q 008219 475 GTKKTVVLREIPEEA----VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEV-P-CLIVAAKD 548 (573)
Q Consensus 475 ~~~~~~i~dt~G~~~----~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~-p-~ilv~nK~ 548 (573)
....++|+||+|... +...+.....+..+|.+++|+|++.... .......+.. .+ | ..+|.||+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-------~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE-------AVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT-------TSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh-------cccCCeEEEEeCC
Confidence 345678999999532 1111111223347999999999976532 1122222221 35 5 78999999
Q ss_pred CCcccccchhhHHHHHHHcCCc
Q 008219 549 DLDSFAMAIQDSTRVFTFLVMV 570 (573)
Q Consensus 549 Dl~~~~~~~~~~~~~~~~~~~~ 570 (573)
|..... ..+..+....+.+
T Consensus 249 D~~~~~---g~~l~~~~~~~~p 267 (432)
T 2v3c_C 249 DGSAKG---GGALSAVAETKAP 267 (432)
T ss_dssp SSCSTT---HHHHHHHHHSSCC
T ss_pred CCccch---HHHHHHHHHHCCC
Confidence 986421 2233355555544
No 440
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.71 E-value=2.6e-05 Score=83.40 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=39.7
Q ss_pred CCceEEEEEEcCCCCChhHHHHHhhCCCCCCCCCCC--Ccc-cEEEEEEEc-CCCeEEEEEEecCCh
Q 008219 425 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPT--TDE-RYAVNVVDQ-PGGTKKTVVLREIPE 487 (573)
Q Consensus 425 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~--~~~-~~~~~~~~~-~~~~~~~~i~dt~G~ 487 (573)
..+.+.|+|+|.||||||||+|+|+|.........+ ..+ ......... ......+.++||+|.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi 101 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL 101 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCc
Confidence 345689999999999999999999998743211111 111 111111111 124567889999995
No 441
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.70 E-value=2e-05 Score=71.88 Aligned_cols=77 Identities=9% Similarity=0.001 Sum_probs=46.2
Q ss_pred CChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHH---HhcCCCCCCCCcEEEEEeCC-CCcccccchhhH
Q 008219 485 IPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEV---ASYGEDTGFEVPCLIVAAKD-DLDSFAMAIQDS 560 (573)
Q Consensus 485 ~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~---~~~~~~~~~~~p~ilv~nK~-Dl~~~~~~~~~~ 560 (573)
.|++.++++ |+.|+.++|++|+|+|++|++.++ ....+.++ ...... ..++|++|.+||. |+... . .+
T Consensus 110 GGQ~klRpl--Wr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~-L~gapLLVlANKqqDlp~A-m---s~ 181 (227)
T 3l82_B 110 GSRYSVIPQ--IQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFG-SSGRPLLVLSCISQGDVKR-M---PC 181 (227)
T ss_dssp -------CC--HHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSS-CSCSCEEEEEEESSTTSCB-C---CH
T ss_pred CcHHHHHHH--HHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhh-hCCCeEEEEeCCCcCccCC-C---CH
Confidence 378889998 999999999999999999986654 44444333 222111 1289999999995 67542 2 23
Q ss_pred HHHHHHcCC
Q 008219 561 TRVFTFLVM 569 (573)
Q Consensus 561 ~~~~~~~~~ 569 (573)
.++++.+++
T Consensus 182 ~EI~e~L~L 190 (227)
T 3l82_B 182 FYLAHELHL 190 (227)
T ss_dssp HHHHHHTTG
T ss_pred HHHHHHcCC
Confidence 345555554
No 442
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=97.60 E-value=0.00023 Score=63.08 Aligned_cols=137 Identities=15% Similarity=0.249 Sum_probs=96.3
Q ss_pred chhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCC-CCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHH
Q 008219 194 LKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNS-PLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFI 272 (573)
Q Consensus 194 ~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~-~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~ 272 (573)
+.+.....++.+|...|.+.+|.++.+++..+.... +. .+...++..+.... ++.|+++.|+.+....+
T Consensus 19 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~l~~~~---------dg~i~~~eF~~~~~~~~ 88 (166)
T 2mys_B 19 FDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAM-GRLNVKNEELDAMIKEA---------SGPINFTVFLTMFGEKL 88 (166)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHh-CCCCCCHHHHHHHHHHC---------CCCcCHHHHHHHHHHHh
Confidence 445667778999999999999999999998877664 44 56666666555431 56799999998866332
Q ss_pred HcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCC
Q 008219 273 EKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPE 352 (573)
Q Consensus 273 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~ 352 (573)
... ...+.+...|+.||.|++|.|+..|+..++....
T Consensus 89 ~~~------------------------------------------~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g- 125 (166)
T 2mys_B 89 KGA------------------------------------------DPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGG- 125 (166)
T ss_pred ccC------------------------------------------CcHHHHHHHHHHhCCCCCcceeHHHHHHHHHHcC-
Confidence 110 0135677899999999999999999999997642
Q ss_pred CCCC---CCCCCccccccCCCcccHHHHHhhchh
Q 008219 353 CPWD---EAPYKDAAEKTALGGLSLDGFLSEWAL 383 (573)
Q Consensus 353 ~p~~---~~~~~~~~~~~~~~~i~l~~~~~~w~~ 383 (573)
.+.. ..........+..|.|+...|+..+.-
T Consensus 126 ~~~~~~~~~~~~~~~D~d~dg~I~~~eF~~~~~~ 159 (166)
T 2mys_B 126 GRFTPEEIKNMWAAFPPDVAGNVDYKNICYVITH 159 (166)
T ss_pred CCCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHHh
Confidence 1211 112222334577888999988877543
No 443
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=97.57 E-value=0.00019 Score=63.02 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=99.3
Q ss_pred hchhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHH
Q 008219 193 ALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFI 272 (573)
Q Consensus 193 ~~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~ 272 (573)
.+.+.....++++|...|.+.+|.++.+++..+... .+..+...++..+...+... .++.|+++.|+.+.....
T Consensus 16 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~~ 89 (161)
T 3fwb_A 16 ELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKA-LGFELPKREILDLIDEYDSE-----GRHLMKYDDFYIVMGEKI 89 (161)
T ss_dssp TSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT-----SSSCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCcC-----CCCeEeHHHHHHHHHHHH
Confidence 356677788999999999999999999998887666 46677888877776665322 244599999998876433
Q ss_pred HcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCC
Q 008219 273 EKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPE 352 (573)
Q Consensus 273 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~ 352 (573)
... ...+.+..+|+.||.|++|.|+.+|+..++.....
T Consensus 90 ~~~------------------------------------------~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~ 127 (161)
T 3fwb_A 90 LKR------------------------------------------DPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGE 127 (161)
T ss_dssp HTC------------------------------------------CHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC
T ss_pred hcC------------------------------------------CcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCC
Confidence 211 12455778999999999999999999999886421
Q ss_pred --CCCCCCCCCccccccCCCcccHHHHHhhc
Q 008219 353 --CPWDEAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 353 --~p~~~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
.+............+..|.|+...|+..+
T Consensus 128 ~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 158 (161)
T 3fwb_A 128 TLTDEELRAMIEEFDLDGDGEINENEFIAIC 158 (161)
T ss_dssp CCCHHHHHHHHHTTCSSSSSSEEHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 11111112222334667888888887764
No 444
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.55 E-value=0.0001 Score=79.96 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 008219 18 RIVVCGEKGTGKSSLIVTAAADT 40 (573)
Q Consensus 18 kI~ivG~~~vGKSSLin~l~~~~ 40 (573)
.|+|+|++|+|||||++.+++-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 39999999999999999999864
No 445
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.50 E-value=0.0003 Score=72.39 Aligned_cols=130 Identities=10% Similarity=0.084 Sum_probs=68.8
Q ss_pred eEEEEEEcCCCCChhHHHHHhhC------CCCCC----CCCCCC-------cccEEEEEEEcC-C---------------
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLG------RPFSD----NYTPTT-------DERYAVNVVDQP-G--------------- 474 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~------~~~~~----~~~~~~-------~~~~~~~~~~~~-~--------------- 474 (573)
+..|+++|.+||||||++..|.. .+... .+.+.. .....+..+... +
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999998873 22110 111100 000011111110 0
Q ss_pred -CeEEEEEEecCChh-----HHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCC
Q 008219 475 -GTKKTVVLREIPEE-----AVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKD 548 (573)
Q Consensus 475 -~~~~~~i~dt~G~~-----~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 548 (573)
....++|+||+|.. ....+ ........+|.+++|+|++....- ......+... -.+..+|.||+
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el-~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~------~~i~gVIlTKl 249 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEM-KQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA------TPIGSIIVTKL 249 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHH-HHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS------CTTEEEEEECC
T ss_pred hCCCCEEEEECCCcccchHHHHHHH-HHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh------CCCeEEEEECC
Confidence 12568899999932 11111 111223467999999999875332 2222333332 34556889999
Q ss_pred CCcccccchhhHHHHHHHcCCc
Q 008219 549 DLDSFAMAIQDSTRVFTFLVMV 570 (573)
Q Consensus 549 Dl~~~~~~~~~~~~~~~~~~~~ 570 (573)
|.... ...+..+....++|
T Consensus 250 D~~~~---gG~~ls~~~~~g~P 268 (443)
T 3dm5_A 250 DGSAK---GGGALSAVAATGAP 268 (443)
T ss_dssp SSCSS---HHHHHHHHHTTCCC
T ss_pred CCccc---ccHHHHHHHHHCCC
Confidence 98753 22333444445554
No 446
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=97.48 E-value=0.00017 Score=62.29 Aligned_cols=136 Identities=16% Similarity=0.205 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHHcCCc
Q 008219 198 CVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRL 277 (573)
Q Consensus 198 ~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 277 (573)
....++++|...|.+++|.++.+|+..+-..+ +..++..++..+...+... .+..|+++.|+.+....+..
T Consensus 4 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~~~~~~~~~~~~~d~~-----~~g~i~~~eF~~~~~~~~~~--- 74 (143)
T 2obh_A 4 QKQEIREAFDLFDADGTGTIDVKELKVAMRAL-GFEPKKEEIKKMISEIDKE-----GTGKMNFGDFLTVMTQKMSE--- 74 (143)
T ss_dssp HHHHHHHHHHTTCTTCCSEEEGGGHHHHHHHT-TCCCCHHHHHHHHHHHTTT-----CCSEEEHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCC-----CCCeeeHHHHHHHHHHHhcc---
Confidence 35568889999999999999999998776554 5567777777666554222 23459999999876532210
Q ss_pred chhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCC-CCC-C
Q 008219 278 ETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAP-ECP-W 355 (573)
Q Consensus 278 ~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~-~~p-~ 355 (573)
....+.+...|+.||.|++|.|+..|+..++...- ..+ .
T Consensus 75 ---------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~ 115 (143)
T 2obh_A 75 ---------------------------------------KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDE 115 (143)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHH
T ss_pred ---------------------------------------ccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHH
Confidence 11234577899999999999999999999886542 111 1
Q ss_pred CCCCCCccccccCCCcccHHHHHhhc
Q 008219 356 DEAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 356 ~~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
...........+..|.|+...|+..+
T Consensus 116 ~~~~~~~~~D~d~dG~I~~~eF~~~~ 141 (143)
T 2obh_A 116 ELQEMIDEADRDGDGEVSEQEFLRIM 141 (143)
T ss_dssp HHHHHHHHHCTTSSSSBCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 11112222345677888888887653
No 447
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.48 E-value=0.00021 Score=73.20 Aligned_cols=113 Identities=16% Similarity=0.124 Sum_probs=60.5
Q ss_pred eEEEEEEcCCCCChhHHHHHhhCCCCCCCCCC-CCcccEE-EEEEEcCCCeEEEEEEecCChhH----HHhhhccccccc
Q 008219 428 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTP-TTDERYA-VNVVDQPGGTKKTVVLREIPEEA----VAKLLSNKDSLA 501 (573)
Q Consensus 428 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~dt~G~~~----~~~~~~~~~~~~ 501 (573)
...++++|++|||||||+|.+.|-........ ..+.+.. ...+........+.++|++|... ...++ ....+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L-~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYL-EKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHH-HHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHH-HHcCCC
Confidence 35799999999999999999999433221111 1111100 01111121222467899988421 22221 111234
Q ss_pred cccEEEEEEeCCChhhHHHHHHHHH-HHHhcCCCCCCCCcEEEEEeCCCCc
Q 008219 502 ACDIAVFVHDSSDESSWKRATELLV-EVASYGEDTGFEVPCLIVAAKDDLD 551 (573)
Q Consensus 502 ~~d~vilv~D~~~~~s~~~~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~ 551 (573)
..+..++ ++... ++..+..+. .+... +.|+++|.||.|+.
T Consensus 148 ~~~~~~~-lS~G~---~~kqrv~la~aL~~~------~~p~~lV~tkpdll 188 (413)
T 1tq4_A 148 EYDFFII-ISATR---FKKNDIDIAKAISMM------KKEFYFVRTKVDSD 188 (413)
T ss_dssp GCSEEEE-EESSC---CCHHHHHHHHHHHHT------TCEEEEEECCHHHH
T ss_pred ccCCeEE-eCCCC---ccHHHHHHHHHHHhc------CCCeEEEEecCccc
Confidence 4465555 77652 222333333 23332 78999999999974
No 448
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=97.45 E-value=0.00031 Score=61.68 Aligned_cols=145 Identities=17% Similarity=0.233 Sum_probs=98.4
Q ss_pred hhchhhHHHHHHHHHHhccCCC-CCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHH
Q 008219 192 QALKPRCVRALKRIFILCDHDR-DGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHAL 270 (573)
Q Consensus 192 ~~~~~~~~~~l~~i~~~~~~~~-~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~ 270 (573)
..+.+.....++++|...|.+. +|.++.+++..+.... +..++..+++.+...+... .++.|+++.|+.+...
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~D~~-----~~g~i~~~eF~~~~~~ 83 (161)
T 1dtl_A 10 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRML-GQNPTPEELQEMIDEVDED-----GSGTVDFDEFLVMMVR 83 (161)
T ss_dssp GGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHCTT-----SSSSBCHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCC-----CCCeEcHHHHHHHHHH
Confidence 3455667778999999999999 9999999988876654 5567777777766655322 2455999999988775
Q ss_pred HHHcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccC
Q 008219 271 FIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTA 350 (573)
Q Consensus 271 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~ 350 (573)
..... ......+.+..+|+.+|.|++|.|+..|+..++...
T Consensus 84 ~~~~~---------------------------------------~~~~~~~~~~~~F~~~D~d~~G~i~~~El~~~l~~~ 124 (161)
T 1dtl_A 84 SMKDD---------------------------------------SKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQAT 124 (161)
T ss_dssp HHC--------------------------------------------CHHHHHHHHHHHHCTTCSSEEEHHHHGGGGTTC
T ss_pred Hhccc---------------------------------------ccchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 43100 001234557889999999999999999999998764
Q ss_pred CCCCCC---CCCCCccccccCCCcccHHHHHhhch
Q 008219 351 PECPWD---EAPYKDAAEKTALGGLSLDGFLSEWA 382 (573)
Q Consensus 351 ~~~p~~---~~~~~~~~~~~~~~~i~l~~~~~~w~ 382 (573)
. .+.. ..........+..|.|+...|+..+.
T Consensus 125 g-~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 158 (161)
T 1dtl_A 125 G-ETITEDDIEELMKDGDKNNDGRIDYDEFLEFMK 158 (161)
T ss_dssp ---CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHH
T ss_pred C-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 2 1111 11112223346777888888877643
No 449
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=97.43 E-value=0.00025 Score=61.56 Aligned_cols=144 Identities=14% Similarity=0.210 Sum_probs=98.2
Q ss_pred chhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHH
Q 008219 194 LKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIE 273 (573)
Q Consensus 194 ~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~ 273 (573)
+.++-...++++|...|.+++|.++.+++..+-.. .+..+...++..+...+... .++.|+++.|+.+......
T Consensus 5 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~~~ 78 (153)
T 3ox6_A 5 LRPEEIEELREAFREFDKDKDGYINCRDLGNCMRT-MGYMPTEMELIELSQQINMN-----LGGHVDFDDFVELMGPKLL 78 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTT-----STTCCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC-----CCccCcHHHHHHHHHHHhh
Confidence 44556677899999999999999999998877655 45577787877777666432 2456999999988764331
Q ss_pred cCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCCC
Q 008219 274 KGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPEC 353 (573)
Q Consensus 274 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~ 353 (573)
.... .....+.+..+|+.+|.|++|.|+.+|+..++...-+.
T Consensus 79 ~~~~--------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 120 (153)
T 3ox6_A 79 AETA--------------------------------------DMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGH 120 (153)
T ss_dssp TCCH--------------------------------------HHHCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSS
T ss_pred cccc--------------------------------------ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcC
Confidence 1110 01124567889999999999999999999988762222
Q ss_pred CCC---CCCCCccccccCCCcccHHHHHhhc
Q 008219 354 PWD---EAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 354 p~~---~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
+.. ..........+..|.|+...|+..+
T Consensus 121 ~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~ 151 (153)
T 3ox6_A 121 QVGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 151 (153)
T ss_dssp CCCHHHHHHHHHHHCSSSSSSBCHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 221 1112222334677888888887654
No 450
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=97.43 E-value=0.00065 Score=59.92 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=94.5
Q ss_pred chhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHH
Q 008219 194 LKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIE 273 (573)
Q Consensus 194 ~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~ 273 (573)
+.+.....++++|...|.+.+|.++.+++..+-.. .+..+...++..+...+... .++.|+++.|+.+......
T Consensus 21 l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~ 94 (166)
T 2aao_A 21 LSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKR-VGANLKESEILDLMQAADVD-----NSGTIDYKEFIAATLHLNK 94 (166)
T ss_dssp SCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGG-GTCCCCHHHHHHHHHHHCTT-----CCSSBCHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCC-----CCCeEcHHHHHHHHHHHhh
Confidence 34555677889999999999999999998877665 45667777776666555322 2345999999877531100
Q ss_pred cCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCCC
Q 008219 274 KGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPEC 353 (573)
Q Consensus 274 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~ 353 (573)
....+.+..+|+.+|.|++|.|+.+|+..++......
T Consensus 95 -------------------------------------------~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~ 131 (166)
T 2aao_A 95 -------------------------------------------IEREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVE 131 (166)
T ss_dssp -------------------------------------------HHTTHHHHHHHHHHCTTCSSSBCHHHHHHHTCC----
T ss_pred -------------------------------------------cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 0012457789999999999999999999998875422
Q ss_pred CCCCCCCCccccccCCCcccHHHHHhhch
Q 008219 354 PWDEAPYKDAAEKTALGGLSLDGFLSEWA 382 (573)
Q Consensus 354 p~~~~~~~~~~~~~~~~~i~l~~~~~~w~ 382 (573)
+............+..|.|+...|...+.
T Consensus 132 ~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 160 (166)
T 2aao_A 132 DVRIEELMRDVDQDNDGRIDYNEFVAMMQ 160 (166)
T ss_dssp ----CCHHHHHCTTCSSSBCHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 32222333334557788899999887754
No 451
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=97.40 E-value=0.00014 Score=62.60 Aligned_cols=134 Identities=15% Similarity=0.246 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHHcC
Q 008219 196 PRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKG 275 (573)
Q Consensus 196 ~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 275 (573)
++-...++++|...|.+++|.++.+++..+-... +..++..++..+... .+..|+++.|+.+.......
T Consensus 3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~---------~~g~i~~~eF~~~~~~~~~~- 71 (143)
T 3j04_B 3 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASM-GKNPTDEYLEGMMSE---------APGPINFTMFLTMFGEKLNG- 71 (143)
T ss_dssp HHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHT-SCCCCHHHHHTTTTT---------SSSCCCHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHh-CCCCCHHHHHHHHHh---------CCCCcCHHHHHHHHHHHhcc-
Confidence 3455678899999999999999999988876654 446666555544332 45679999999886632110
Q ss_pred CcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCC-CC
Q 008219 276 RLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPE-CP 354 (573)
Q Consensus 276 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~-~p 354 (573)
....+.+...|+.||.|++|.|+..|+..++..... .+
T Consensus 72 -----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~ 110 (143)
T 3j04_B 72 -----------------------------------------TDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFT 110 (143)
T ss_dssp -----------------------------------------SCCHHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCC
T ss_pred -----------------------------------------CCcHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCC
Confidence 001245778899999999999999999888876421 11
Q ss_pred -CCCCCCCccccccCCCcccHHHHHhhc
Q 008219 355 -WDEAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 355 -~~~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
............+..|.|+...|+...
T Consensus 111 ~~~~~~~~~~~D~d~dg~i~~~eF~~~~ 138 (143)
T 3j04_B 111 DEEVDEMYREAPIDKKGNFNYVEFTRIL 138 (143)
T ss_dssp HHHHHHHHHHTTCCSSSCCCSTHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 111112222334667777777777654
No 452
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=97.39 E-value=9.4e-05 Score=74.71 Aligned_cols=145 Identities=16% Similarity=0.287 Sum_probs=98.7
Q ss_pred chhhhhchhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHH
Q 008219 188 DQESQALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFL 267 (573)
Q Consensus 188 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~ 267 (573)
.+....+.++-...++++|...|.+.+|.++.+|+..+-.. ++..++..+++.+.+.+... .+..|+++.|+.+
T Consensus 290 ePs~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrs-LG~~~TeeEI~~Lf~~~D~D-----gDG~IdFeEFl~l 363 (440)
T 3u0k_A 290 EPTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDAD-----GDGTIDFPEFLIM 363 (440)
T ss_dssp CCBCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHHHCSS-----CSSSEEHHHHHHH
T ss_pred HhhHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC-----CCCcCcHHHHHHH
Confidence 34555677888889999999999999999999999887655 46778888888877766332 2445999999877
Q ss_pred HHHHHHcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhc
Q 008219 268 HALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLF 347 (573)
Q Consensus 268 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f 347 (573)
....+. . ....+.+...|+.||.|++|.|+.+|+..++
T Consensus 364 ms~~lk---~---------------------------------------~d~eeeLreAFk~fDkDgdG~IS~eELr~vL 401 (440)
T 3u0k_A 364 MARKMK---D---------------------------------------TDSEEEIREAFRVFDKDGNGYISAAELRHVM 401 (440)
T ss_dssp HHTC------------------------------------------------CHHHHHHHHHHCTTCSSEECHHHHHHHH
T ss_pred HHHHhc---C---------------------------------------CChHHHHHHHHHHHCCCCcCcCCHHHHHHHH
Confidence 541110 0 0012457788999999999999999999888
Q ss_pred ccCC-CCC-CCCCCCCccccccCCCcccHHHHHhh
Q 008219 348 STAP-ECP-WDEAPYKDAAEKTALGGLSLDGFLSE 380 (573)
Q Consensus 348 ~~~~-~~p-~~~~~~~~~~~~~~~~~i~l~~~~~~ 380 (573)
...- ..+ -....+......+..|.|+.+.|+..
T Consensus 402 ~~lGe~LSdeEIdeLfke~D~DgDGkIsyeEFvkm 436 (440)
T 3u0k_A 402 TNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 436 (440)
T ss_dssp HHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHH
Confidence 6531 111 00111222233466778888877653
No 453
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.37 E-value=0.00021 Score=61.28 Aligned_cols=136 Identities=18% Similarity=0.309 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHHcCC
Q 008219 197 RCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGR 276 (573)
Q Consensus 197 ~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 276 (573)
+....++++|...|.+++|.++.+++..+... .+..+...++..+...+... .++.|+++.|+.+....+...
T Consensus 3 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~~~~~- 75 (142)
T 2bl0_C 3 DQVSEFKEAFELFDSERTGFITKEGLQTVLKQ-FGVRVEPAAFNEMFNEADAT-----GNGKIQFPEFLSMMGRRMKQT- 75 (142)
T ss_dssp HHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH-HTCCCCHHHHHHHHHHHCTT-----CSSEEEHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhCcC-----CCCeeeHHHHHHHHHHHhcCC-
Confidence 34566888999999999999999999877665 45677777777766655322 234599999998876432110
Q ss_pred cchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCC-CC-
Q 008219 277 LETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPE-CP- 354 (573)
Q Consensus 277 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~-~p- 354 (573)
...+.+..+|+.+|.|++|.|+..|+..++..... .+
T Consensus 76 -----------------------------------------~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~ 114 (142)
T 2bl0_C 76 -----------------------------------------TSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKP 114 (142)
T ss_dssp -----------------------------------------CCHHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSSSCCCH
T ss_pred -----------------------------------------ChHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCH
Confidence 01345778999999999999999999999876421 11
Q ss_pred CCCCCCCccccccCCCcccHHHHHhhc
Q 008219 355 WDEAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 355 ~~~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
........... +..|.|+...|+..+
T Consensus 115 ~~~~~~~~~~d-~~dg~i~~~eF~~~~ 140 (142)
T 2bl0_C 115 HEFAEFLGITE-TEKGQIRYDNFINTM 140 (142)
T ss_dssp HHHHHHHHHHC-CSSSEECSHHHHTTT
T ss_pred HHHHHHHHHhC-CCCCcEeHHHHHHHH
Confidence 11111122223 667778888877654
No 454
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=97.36 E-value=0.00026 Score=62.82 Aligned_cols=141 Identities=15% Similarity=0.208 Sum_probs=95.3
Q ss_pred chhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHH
Q 008219 194 LKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIE 273 (573)
Q Consensus 194 ~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~ 273 (573)
+.++....++++|...|.+++|.++.+|+..+... .+..+...++..+...+... .++.|+++.|+.+......
T Consensus 22 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~eF~~~~~~~~~ 95 (169)
T 3qrx_A 22 LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRA-LGFEPKKEEIKKMISEIDKD-----GSGTIDFEEFLTMMTAKMG 95 (169)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHH-TSCCCCHHHHHHHHHHHCSS-----SSSSEEHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhcCC-----CCCcCCHHHHHHHHHHHhc
Confidence 55666788999999999999999999999877654 45677777777776655221 2445999999988764331
Q ss_pred cCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCC-
Q 008219 274 KGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPE- 352 (573)
Q Consensus 274 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~- 352 (573)
. ....+.+..+|+.+|.|++|.|+.+|+..++.....
T Consensus 96 ~------------------------------------------~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 133 (169)
T 3qrx_A 96 E------------------------------------------RDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGEN 133 (169)
T ss_dssp H------------------------------------------HHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCC
T ss_pred c------------------------------------------cCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 1 122345677888888888888888888888875421
Q ss_pred CC-CCCCCCCccccccCCCcccHHHHHhhch
Q 008219 353 CP-WDEAPYKDAAEKTALGGLSLDGFLSEWA 382 (573)
Q Consensus 353 ~p-~~~~~~~~~~~~~~~~~i~l~~~~~~w~ 382 (573)
.+ ............+..|.|+...|+..+.
T Consensus 134 ~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 164 (169)
T 3qrx_A 134 LTEEELQEMIAEADRNDDNEIDEDEFIRIMK 164 (169)
T ss_dssp CCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC
T ss_pred CCHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence 11 1111112223346677788888777654
No 455
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.33 E-value=0.0004 Score=75.30 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHhhCCCC
Q 008219 430 QCFVFGPKKAGKSVLLNSFLGRPF 453 (573)
Q Consensus 430 ki~vvG~~~vGKSsLi~~l~~~~~ 453 (573)
.++|+|++|||||||++.+.|-..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-
T ss_pred eEEEECCCCChHHHHHHHHhCCCC
Confidence 499999999999999999999743
No 456
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=97.31 E-value=0.00046 Score=60.56 Aligned_cols=143 Identities=19% Similarity=0.283 Sum_probs=97.9
Q ss_pred chhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHH
Q 008219 194 LKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIE 273 (573)
Q Consensus 194 ~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~ 273 (573)
+.++....++++|...|.+.+|.++..++..+.... +..+...++..+...+... .++.|+++.|+.+......
T Consensus 14 ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~ 87 (162)
T 1top_A 14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRML-GQNPTKEELDAIIEEVDED-----GSGTIDFEEFLVMMVRQMK 87 (162)
T ss_dssp SCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHHT-TCCCCHHHHHHHHHHHCTT-----SCCEEEHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHcCC-----CCCcEeHHHHHHHHHHHhc
Confidence 556677889999999999999999999988776654 5567777777666655322 2345999999988765432
Q ss_pred cCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCC-
Q 008219 274 KGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPE- 352 (573)
Q Consensus 274 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~- 352 (573)
... .......+..+|+.+|.|++|.|+..|+..++.....
T Consensus 88 ~~~---------------------------------------~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~ 128 (162)
T 1top_A 88 EDA---------------------------------------KGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEH 128 (162)
T ss_dssp HHH---------------------------------------HHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTCC
T ss_pred ccc---------------------------------------ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC
Confidence 100 0113456788999999999999999999999876531
Q ss_pred CC-CCCCCCCccccccCCCcccHHHHHhhc
Q 008219 353 CP-WDEAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 353 ~p-~~~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
.+ ............+..|.|+...|+...
T Consensus 129 ~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~ 158 (162)
T 1top_A 129 VTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 158 (162)
T ss_dssp CCHHHHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 11 111112222334667788888887664
No 457
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=97.30 E-value=0.00039 Score=61.92 Aligned_cols=146 Identities=18% Similarity=0.199 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHhccCCCCCccCchhhhHHhhhhc---CCCCChhH-HHHHHH-HHhhhcc-CCccCCCcChhhHHHHHHH
Q 008219 197 RCVRALKRIFILCDHDRDGALSDAELNDFQVKCF---NSPLQPSE-IVGVKR-VVQEKLR-EGVNERGLTLAGFLFLHAL 270 (573)
Q Consensus 197 ~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~---~~~l~~~~-i~~l~~-~i~~~~~-~~~~~~~~~~~~f~~~~~~ 270 (573)
+....++++|...|.+.+|.++.+|+..+..... +......+ +..+.. .+...+. .. .+..|+++.|+.+...
T Consensus 3 ~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~D-~~g~i~~~EF~~~~~~ 81 (174)
T 1q80_A 3 LWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVA-GGKGIDETTFINSMKE 81 (174)
T ss_dssp HHHHHHHHHHHHHCTTCSSEESHHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHTGGGTT-TTSCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCcEeHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHhcC-CCCeEcHHHHHHHHHH
Confidence 3456688899999999999999999988776654 25555555 443321 1111111 12 5566999999987764
Q ss_pred HHHcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccC
Q 008219 271 FIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTA 350 (573)
Q Consensus 271 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~ 350 (573)
..... .......+.+..+|+.||.|++|.|+.+|+..++...
T Consensus 82 ~~~~~--------------------------------------~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~ 123 (174)
T 1q80_A 82 MVKNP--------------------------------------EAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGML 123 (174)
T ss_dssp HTTST--------------------------------------TCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHHHHHHH
T ss_pred HcCcc--------------------------------------cHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc
Confidence 43200 0012234567889999999999999999999998776
Q ss_pred CCCCCCCCCCCccccccCCCcccHHHHHhhc
Q 008219 351 PECPWDEAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 351 ~~~p~~~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
...+............+..|.|+...|+..+
T Consensus 124 g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~ 154 (174)
T 1q80_A 124 GLDKTMAPASFDAIDTNNDGLLSLEEFVIAG 154 (174)
T ss_dssp TCCGGGHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCceEeHHHHHHHH
Confidence 3222211122223345778889999888774
No 458
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=97.29 E-value=0.00098 Score=57.38 Aligned_cols=141 Identities=14% Similarity=0.248 Sum_probs=95.6
Q ss_pred hhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHHc
Q 008219 195 KPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEK 274 (573)
Q Consensus 195 ~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 274 (573)
.+.....++++|...|.+.+|.++.+++..+-.. .+..++..++..+...+. +...+...|+++.|+.+.......
T Consensus 3 ~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~~---~~d~~~g~i~~~eF~~~~~~~~~~ 78 (149)
T 2mys_C 3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARA-LGQNPTNAEINKILGNPS---KEEMNAAAITFEEFLPMLQAAANN 78 (149)
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhh---hccccCCcCcHHHHHHHHHHHhcc
Confidence 3455667889999999999999999998776554 355667777777666551 112223569999999876633100
Q ss_pred CCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCCCC
Q 008219 275 GRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECP 354 (573)
Q Consensus 275 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p 354 (573)
. .......+..+|+.||.|++|.|+..|+..++..... +
T Consensus 79 ~----------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~-~ 117 (149)
T 2mys_C 79 K----------------------------------------DQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGE-K 117 (149)
T ss_pred C----------------------------------------CcchHHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCC-C
Confidence 0 0112455788999999999999999999999987521 2
Q ss_pred CC---CCCCCccccccCCCcccHHHHHhhc
Q 008219 355 WD---EAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 355 ~~---~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
.. ....... ..+..|.|+...|+..+
T Consensus 118 ~~~~~~~~~~~~-d~~~dg~i~~~eF~~~~ 146 (149)
T 2mys_C 118 MTEEEVEELMKG-QEDSNGCINYEAFVKHI 146 (149)
T ss_pred CCHHHHHHHHhh-CCCCCCcEeHHHHHHHH
Confidence 11 1112222 45677888888887764
No 459
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=97.26 E-value=0.00027 Score=61.51 Aligned_cols=139 Identities=16% Similarity=0.234 Sum_probs=90.9
Q ss_pred chhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHH
Q 008219 194 LKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIE 273 (573)
Q Consensus 194 ~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~ 273 (573)
++++-...++.+|...|.+++|.++..|+..+-... +..+...++..+...+... .+..+++..|+........
T Consensus 4 lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~-~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~ 77 (148)
T 2lmt_A 4 LTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTL-GQNPTEAELQDLIAEAENN-----NNGQLNFTEFCGIMAKQMR 77 (148)
T ss_dssp CCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHH-TCCCCHHHHHHHHHHHHTT-----STTEEEHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhc-CCCchHHHHHHHHHhcccC-----CCCcccHHHHHHHHHHHhc
Confidence 445556778999999999999999999998766554 4566677766665555332 2334777888766542110
Q ss_pred cCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCC--
Q 008219 274 KGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAP-- 351 (573)
Q Consensus 274 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~-- 351 (573)
. ....+-+...|+.||.|++|.|+..|+..++...-
T Consensus 78 ~------------------------------------------~~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~ 115 (148)
T 2lmt_A 78 E------------------------------------------TDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEK 115 (148)
T ss_dssp T------------------------------------------TTTHHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCC
T ss_pred c------------------------------------------cCcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCcc
Confidence 0 01124577899999999999999999998887531
Q ss_pred CCCCCCCCCCccccccCCCcccHHHHHhh
Q 008219 352 ECPWDEAPYKDAAEKTALGGLSLDGFLSE 380 (573)
Q Consensus 352 ~~p~~~~~~~~~~~~~~~~~i~l~~~~~~ 380 (573)
..+..........-.+..|.|+.+.|+..
T Consensus 116 ~~~~e~~~l~~~~D~d~dG~I~~~EF~~~ 144 (148)
T 2lmt_A 116 VTDEEIDEMIREADFDGDGMINYEEFVWM 144 (148)
T ss_dssp CCHHHHHHHHHHHCCSCCSSEEHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 11111111222334567788888887754
No 460
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.25 E-value=0.0005 Score=62.81 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=23.2
Q ss_pred CCCCCCcceEEEEEcCCCCCHHHHHHHHhcC
Q 008219 9 SGPGGKTGVRIVVCGEKGTGKSSLIVTAAAD 39 (573)
Q Consensus 9 ~~~~~~~~~kI~ivG~~~vGKSSLin~l~~~ 39 (573)
......+.--|+|+|++|||||||+++|++.
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3344455567999999999999999999864
No 461
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=97.25 E-value=0.00052 Score=59.44 Aligned_cols=139 Identities=18% Similarity=0.273 Sum_probs=91.9
Q ss_pred hhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHHc
Q 008219 195 KPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEK 274 (573)
Q Consensus 195 ~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 274 (573)
.++....++.+|...|.+++|.++.+++..+.... +......++..+...+... .++.|+++.|+.+....+..
T Consensus 5 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~~~~ 78 (148)
T 1exr_A 5 TEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDAD-----GNGTIDFPEFLSLMARKMKE 78 (148)
T ss_dssp CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH-TCCCCHHHHHHHHHHHCTT-----CSSSEEHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHHCCC-----CCCcCcHHHHHHHHHhcccC
Confidence 34556678889999999999999999988776654 4556666666655544221 23459999998876532210
Q ss_pred CCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCC-C
Q 008219 275 GRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPE-C 353 (573)
Q Consensus 275 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~-~ 353 (573)
....+.+...|+.||.|++|.|+..|+..++...-. .
T Consensus 79 ------------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~ 116 (148)
T 1exr_A 79 ------------------------------------------QDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKL 116 (148)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTCCC
T ss_pred ------------------------------------------CCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCC
Confidence 112345677899999999999999999998876421 1
Q ss_pred C-CCCCCCCccccccCCCcccHHHHHhhc
Q 008219 354 P-WDEAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 354 p-~~~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
+ ............+..|.|+...|+...
T Consensus 117 ~~~~~~~~~~~~d~d~dg~i~~~eF~~~~ 145 (148)
T 1exr_A 117 TDDEVDEMIREADIDGDGHINYEEFVRMM 145 (148)
T ss_dssp CHHHHHHHHHHHCSSSSSSBCHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 1 111111122334677888888887653
No 462
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=97.24 E-value=0.00029 Score=60.66 Aligned_cols=139 Identities=17% Similarity=0.288 Sum_probs=96.6
Q ss_pred chhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHH
Q 008219 194 LKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIE 273 (573)
Q Consensus 194 ~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~ 273 (573)
+.+.....++++|...|.+.+|.++.+++..+... .+..+...++..+...+... .++.|+++.|+.+......
T Consensus 5 l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~-----~~g~i~~~ef~~~~~~~~~ 78 (147)
T 4ds7_A 5 LTEEQIAEFKEAFALFDKDNSGSISASELATVMRS-LGLSPSEAEVADLMNEIDVD-----GNHAIEFSEFLALMSRQLK 78 (147)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT-----SSSEEEHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHH-hCCCCCHHHHHHHHHHhccC-----CCCcCcHHHHHHHHHHhcc
Confidence 45666788899999999999999999998877655 56677777777776666322 2345999999988653321
Q ss_pred cCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCCC
Q 008219 274 KGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPEC 353 (573)
Q Consensus 274 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~ 353 (573)
. ....+.+..+|+.+|.|++|.|+.+|+..++......
T Consensus 79 ~------------------------------------------~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~ 116 (147)
T 4ds7_A 79 C------------------------------------------NDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEK 116 (147)
T ss_dssp T------------------------------------------HHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred C------------------------------------------CCcHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCC
Confidence 1 1233567789999999999999999999999865321
Q ss_pred C--CCCCCCCccccccCCCcccHHHHHhhc
Q 008219 354 P--WDEAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 354 p--~~~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
. ........... +..|.|+...|+...
T Consensus 117 ~~~~~~~~~~~~~d-~~dg~i~~~eF~~~l 145 (147)
T 4ds7_A 117 LTDAEVDEMLREVS-DGSGEINIKQFAALL 145 (147)
T ss_dssp CCHHHHHHHHHHHS-SSCSSEEHHHHHHHT
T ss_pred CCHHHHHHHHHHhc-CCCCcCcHHHHHHHH
Confidence 1 11111122223 667788888877653
No 463
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=97.21 E-value=0.00066 Score=60.45 Aligned_cols=150 Identities=21% Similarity=0.251 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHHhccCCCCCccCchhhhHH---hhhhcCCCCChhHHHHHHHHHhhhcc-----CCcc-CCCcChhhHHH
Q 008219 196 PRCVRALKRIFILCDHDRDGALSDAELNDF---QVKCFNSPLQPSEIVGVKRVVQEKLR-----EGVN-ERGLTLAGFLF 266 (573)
Q Consensus 196 ~~~~~~l~~i~~~~~~~~~~~l~~~el~~~---q~~~~~~~l~~~~i~~l~~~i~~~~~-----~~~~-~~~~~~~~f~~ 266 (573)
++..+.++++|...|.+++|.++.+|+... .....+..+...++..+...+..... ...+ ++.|+++.|+.
T Consensus 3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~d~dg~i~~~Ef~~ 82 (176)
T 1nya_A 3 AIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIR 82 (176)
T ss_dssp SHHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCTTCCBCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence 344667889999999999999999999885 34457778888888766532221111 1223 34599999998
Q ss_pred HHHHHHHcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhh
Q 008219 267 LHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDL 346 (573)
Q Consensus 267 ~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~ 346 (573)
+............ +.......+..+|+.+|.|++|.|+..|+..+
T Consensus 83 ~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~ 127 (176)
T 1nya_A 83 VTENLIFEQGEAS-----------------------------------FNRVLGPVVKGIVGMCDKNADGQINADEFAAW 127 (176)
T ss_dssp HHHHHHSSSCHHH-----------------------------------HHHHHHHHHHHHHHHTCSSCCSEEEHHHHHHH
T ss_pred HHHHHhcCCchhh-----------------------------------HHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHH
Confidence 8775442211100 00112345677888888888888888888777
Q ss_pred cccCCCCCCC-CCCCCccccccCCCcccHHHHHhhc
Q 008219 347 FSTAPECPWD-EAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 347 f~~~~~~p~~-~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
+.... .+-. ..........+..|.|+...|...+
T Consensus 128 l~~~g-~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~ 162 (176)
T 1nya_A 128 LTALG-MSKAEAAEAFNQVDTNGNGELSLDELLTAV 162 (176)
T ss_dssp HHHTT-CCHHHHHHHHHHHCTTCSSEEEHHHHHHHH
T ss_pred HHHhC-CCHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 76542 1100 0011112234556667776666553
No 464
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=97.18 E-value=0.00036 Score=63.90 Aligned_cols=135 Identities=18% Similarity=0.192 Sum_probs=94.8
Q ss_pred chhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHH
Q 008219 194 LKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIE 273 (573)
Q Consensus 194 ~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~ 273 (573)
+.+.....++++|..+|.+++|.++..++..+-..+ +..+...++..+...+ ++.|+++.|+.+....+.
T Consensus 51 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~l-g~~~~~~~~~~l~~~~---------~g~i~~~eF~~~~~~~~~ 120 (196)
T 3dtp_E 51 FTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSL-GRLCTEQELDSMVAEA---------PGPINFTMFLTIFGDRIA 120 (196)
T ss_dssp SCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTT-SCCCCHHHHHHHHTTS---------SSCCBHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHc---------cCCCcHHHHHHHHHHHhc
Confidence 455667789999999999999999999988776554 4667776666555433 567999999988652110
Q ss_pred cCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCCC
Q 008219 274 KGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPEC 353 (573)
Q Consensus 274 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~ 353 (573)
+ ......+...|+.||.|++|.|+..|+..++ .. +.
T Consensus 121 ---------------------------~---------------~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~-g~ 156 (196)
T 3dtp_E 121 ---------------------------G---------------TDEEDVIVNAFNLFDEGDGKCKEETLKRSLT-TW-GE 156 (196)
T ss_dssp ---------------------------S---------------SCCHHHHHHHHHTTCSSSSCCBHHHHHHHHH-HS-SS
T ss_pred ---------------------------C---------------CCcHHHHHHHHHHHCCCCCCcCcHHHHHHHH-Hc-CC
Confidence 0 0113567889999999999999999999999 53 22
Q ss_pred CCC---CCCCCccccccCCCcccHHHHHhhch
Q 008219 354 PWD---EAPYKDAAEKTALGGLSLDGFLSEWA 382 (573)
Q Consensus 354 p~~---~~~~~~~~~~~~~~~i~l~~~~~~w~ 382 (573)
+.. ...+......+..|.|+...|+....
T Consensus 157 ~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~ 188 (196)
T 3dtp_E 157 KFSQDEVDQALSEAPIDGNGLIDIKKFAQILT 188 (196)
T ss_dssp CCCHHHHHHHHHSSCEETTEECHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHcCCCCCCEEeHHHHHHHHH
Confidence 221 11222334456788888888887644
No 465
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=97.16 E-value=0.0013 Score=59.58 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=95.9
Q ss_pred hhhHHHHHHHHHHhc-cCCCCCccCchhhhHHhhhhc---CCCCChhHHHHHHHHHhhhc-----cCCcc-CCCcChhhH
Q 008219 195 KPRCVRALKRIFILC-DHDRDGALSDAELNDFQVKCF---NSPLQPSEIVGVKRVVQEKL-----REGVN-ERGLTLAGF 264 (573)
Q Consensus 195 ~~~~~~~l~~i~~~~-~~~~~~~l~~~el~~~q~~~~---~~~l~~~~i~~l~~~i~~~~-----~~~~~-~~~~~~~~f 264 (573)
.+...+.++++|... |.+.+|.++.+|+........ +.......+..+...+.... ....+ +..|+++.|
T Consensus 7 s~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~~Ef 86 (191)
T 2ccm_A 7 SDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEW 86 (191)
T ss_dssp CHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHH
T ss_pred cHHHHHHHHHhccccccCCCCCeeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeECHHHH
Confidence 345566788999999 999999999999988877663 66677777776663332221 11233 345999999
Q ss_pred HHHHHHHHHcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhh
Q 008219 265 LFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVE 344 (573)
Q Consensus 265 ~~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~ 344 (573)
+.+........ -+ | ..+.......+..+|+.+|.|++|.|+.+|+.
T Consensus 87 ~~~~~~~~~~~-----------~~------------~-----------~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~ 132 (191)
T 2ccm_A 87 LKMWAECVKSV-----------EK------------G-----------ESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYS 132 (191)
T ss_dssp HHHHHHHHHHH-----------HT------------T-----------CCCCHHHHHHHHHHHHHHCTTCSSBCCHHHHH
T ss_pred HHHHHHHhccc-----------cc------------h-----------hhchHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 88766432110 00 0 00113334567889999999999999999998
Q ss_pred hhcccCCCCC-CCCCCCCccccccCCCcccHHHHHhhc
Q 008219 345 DLFSTAPECP-WDEAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 345 ~~f~~~~~~p-~~~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
.++.... .+ -...........+..|.|+...|....
T Consensus 133 ~~l~~~g-~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 169 (191)
T 2ccm_A 133 TVYMSYG-IPKSDCDAAFDTLSDGGKTMVTREIFARLW 169 (191)
T ss_dssp HHHHTTT-CCHHHHHHHHHHHTTTTTSCCBHHHHHHHH
T ss_pred HHHHHhC-CCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence 8886542 11 001111222334667788888877664
No 466
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.16 E-value=7.5e-05 Score=78.59 Aligned_cols=109 Identities=12% Similarity=0.030 Sum_probs=65.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-----ecccccCCceeEEEEeCCCCccc--hhhh------
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-----LPEDFYPDRVPITIIDTPSSVED--RGKL------ 80 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~Dt~G~~~~--~~~~------ 80 (573)
...++|+++|.+|+||||+.++|.........+ +.. .............+||..|.+.+ ....
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~----t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~ 112 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVP----TREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALN 112 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCC----EEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCC----ceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHH
Confidence 456899999999999999999997643211111 111 11111122244568898886322 2221
Q ss_pred --HhhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 008219 81 --GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLD 130 (573)
Q Consensus 81 --~~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D 130 (573)
..++..+++.++|+|.++. +..... .|...++.. ..+++.+-..++
T Consensus 113 ~~~~~l~~~~G~~vV~D~tn~-~~~~R~-~~~~~~~~~--~~~vv~l~~~~~ 160 (469)
T 1bif_A 113 DVRKFLSEEGGHVAVFDATNT-TRERRA-MIFNFGEQN--GYKTFFVESICV 160 (469)
T ss_dssp HHHHHHHTTCCSEEEEESCCC-SHHHHH-HHHHHHHHH--TCEEEEEEECCC
T ss_pred HHHHHHHhCCCCEEEEeCCCC-CHHHHH-HHHHHHHhc--CCcEEEEEEECC
Confidence 3556668898999999987 344444 477777765 456665554443
No 467
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=97.15 E-value=0.0019 Score=57.85 Aligned_cols=153 Identities=12% Similarity=0.167 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHHhc-cCCCCCccCchhhhHHhhhhc---CCCCChhHHHHHHHHHhhhcc-----CCcc-CCCcChhhHH
Q 008219 196 PRCVRALKRIFILC-DHDRDGALSDAELNDFQVKCF---NSPLQPSEIVGVKRVVQEKLR-----EGVN-ERGLTLAGFL 265 (573)
Q Consensus 196 ~~~~~~l~~i~~~~-~~~~~~~l~~~el~~~q~~~~---~~~l~~~~i~~l~~~i~~~~~-----~~~~-~~~~~~~~f~ 265 (573)
+...+.++++|... |.+.+|.++.+|+..+..... +..+...+++.+...+..... ...+ +..|+++.|+
T Consensus 4 ~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~ 83 (185)
T 2sas_A 4 DFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYL 83 (185)
T ss_dssp HHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHH
T ss_pred HHHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEcHHHHH
Confidence 44566788999999 999999999999877766543 246667777766533222211 1233 3459999999
Q ss_pred HHHHHHHHcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhh
Q 008219 266 FLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVED 345 (573)
Q Consensus 266 ~~~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~ 345 (573)
.+.......... .. .........+..+|+.+|.|++|.|+.+|+..
T Consensus 84 ~~~~~~~~~~~~-------------------~~---------------~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~ 129 (185)
T 2sas_A 84 AMWEKTIATCKS-------------------VA---------------DLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQN 129 (185)
T ss_dssp HHHHHHHHTCCS-------------------GG---------------GSCTTHHHHHHHHHHHHCTTSSSCCCHHHHHH
T ss_pred HHHHHHhccccc-------------------hh---------------hhhHHHHHHHHHHHHHHcCCCCCeEcHHHHHH
Confidence 887755432100 00 00112346688899999999999999999999
Q ss_pred hcccCCCCCCCCCCCCccccccCCCcccHHHHHhhch
Q 008219 346 LFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEWA 382 (573)
Q Consensus 346 ~f~~~~~~p~~~~~~~~~~~~~~~~~i~l~~~~~~w~ 382 (573)
++......+-...........+..|.|+...|.....
T Consensus 130 ~l~~~g~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~ 166 (185)
T 2sas_A 130 YCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYY 166 (185)
T ss_dssp HTTSSCCCCSSHHHHHHHHHTTTTSCCSHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence 9976431111111222334457788899988877643
No 468
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=97.13 E-value=0.0006 Score=59.56 Aligned_cols=134 Identities=17% Similarity=0.266 Sum_probs=92.9
Q ss_pred chhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHH
Q 008219 194 LKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIE 273 (573)
Q Consensus 194 ~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~ 273 (573)
+.++....++++|...|.+.+|.++.+++..+...+ +..+...++..+.. . .+..|+++.|+.+....+.
T Consensus 12 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~---~------~~g~i~~~eF~~~~~~~~~ 81 (156)
T 1wdc_B 12 LPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQL-GRAPDDKELTAMLK---E------APGPLNFTMFLSIFSDKLS 81 (156)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHH-SSCCCHHHHHHHHT---T------SSSCCCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHH---h------CCCcCcHHHHHHHHHHHhc
Confidence 455667778999999999999999999998877665 55666666665543 1 3567999999988763321
Q ss_pred cCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCCC
Q 008219 274 KGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPEC 353 (573)
Q Consensus 274 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~ 353 (573)
.. ...+.+...|+.||.|++|.|+..|+..++... +.
T Consensus 82 ~~------------------------------------------~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~ 118 (156)
T 1wdc_B 82 GT------------------------------------------DSEETIRNAFAMFDEQETKKLNIEYIKDLLENM-GD 118 (156)
T ss_dssp SC------------------------------------------CCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHS-SS
T ss_pred CC------------------------------------------ChHHHHHHHHHHHCcCCCCccCHHHHHHHHHHh-CC
Confidence 00 013457889999999999999999999998764 21
Q ss_pred CCC---CCCCCccccccCCCcccHHHHHhhc
Q 008219 354 PWD---EAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 354 p~~---~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
+.. ..........+ .|.|+...|+...
T Consensus 119 ~~~~~~~~~~~~~~d~~-dg~i~~~eF~~~~ 148 (156)
T 1wdc_B 119 NFNKDEMRMTFKEAPVE-GGKFDYVKFTAMI 148 (156)
T ss_dssp CCCHHHHHHHHHHCCEE-TTEECHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCC-CCEEeHHHHHHHH
Confidence 211 11112223346 7888888887764
No 469
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=97.13 E-value=0.00072 Score=63.23 Aligned_cols=138 Identities=14% Similarity=0.165 Sum_probs=97.7
Q ss_pred hhhchhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHH
Q 008219 191 SQALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHAL 270 (573)
Q Consensus 191 ~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~ 270 (573)
...+.++....++++|...|.+++|.++.+|+...-... +..++..+++.+.+.+... .++.|+++.|..+...
T Consensus 42 ~~~l~~~e~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~-g~~~~~~~~~~l~~~~D~d-----~dg~I~~~EF~~~~~~ 115 (220)
T 3sjs_A 42 LNTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPG-GIRLSPQTALRMMRIFDTD-----FNGHISFYEFMAMYKF 115 (220)
T ss_dssp GGGCCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHCCBGG-GBCCCHHHHHHHHHHHCTT-----CSSCBCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCC-----CCCcCCHHHHHHHHHH
Confidence 344667777888999999999999999999988776554 5667777777777666322 2455999999987652
Q ss_pred HHHcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccC
Q 008219 271 FIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTA 350 (573)
Q Consensus 271 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~ 350 (573)
.+.+...|+.||.|++|.|+.+|+..++...
T Consensus 116 -------------------------------------------------~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~ 146 (220)
T 3sjs_A 116 -------------------------------------------------MELAYNLFVMNARARSGTLEPHEILPALQQL 146 (220)
T ss_dssp -------------------------------------------------HHHHHHHHHHHCCSSTTEECHHHHHHHHHHH
T ss_pred -------------------------------------------------HHHHHHHHHHHCCCCCCCCcHHHHHHHHHHh
Confidence 1336779999999999999999999988753
Q ss_pred C--CCCCCCCCCCccccccCCCcccHHHHHhhchhh
Q 008219 351 P--ECPWDEAPYKDAAEKTALGGLSLDGFLSEWALM 384 (573)
Q Consensus 351 ~--~~p~~~~~~~~~~~~~~~~~i~l~~~~~~w~~~ 384 (573)
- ..+........... +..|.|+...|+......
T Consensus 147 g~~~~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~~l 181 (220)
T 3sjs_A 147 GFYINQRTSLLLHRLFA-RGMAFCDLNCWIAICAFA 181 (220)
T ss_dssp TCCCCHHHHHHHHHHHC---CCSEEHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHHH
Confidence 1 11111111222233 677899999999876554
No 470
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=97.11 E-value=0.0007 Score=63.58 Aligned_cols=145 Identities=15% Similarity=0.096 Sum_probs=96.6
Q ss_pred chhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhcc---CCcc-CCCcChhhHHHHHH
Q 008219 194 LKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLR---EGVN-ERGLTLAGFLFLHA 269 (573)
Q Consensus 194 ~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~---~~~~-~~~~~~~~f~~~~~ 269 (573)
+.++....++++|...|.+.+|.++.+|+.....+.++......++..+...+-..+. ...+ +..|+++.|+.+..
T Consensus 45 ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~~~~~~~~~~~~~~f~~~~~~~~D~d~~G~I~~~EF~~~~~ 124 (226)
T 2lvv_A 45 KDAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQRAFDKAKDLGNKVKGVGEEDLVEFLEFRL 124 (226)
T ss_dssp CCHHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCTTTSSSCHHHHHHHHHHHHHHHHHHSCCCCCSCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcCCHHHHHHHHH
Confidence 3455567788999999999999999999998666666766666676666655522210 0123 33499999988522
Q ss_pred HHHHcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhccc
Q 008219 270 LFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFST 349 (573)
Q Consensus 270 ~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~ 349 (573)
..- . ....+.+..+|+.||.|++|.|+..|+..++..
T Consensus 125 ~~~-------------~------------------------------~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~ 161 (226)
T 2lvv_A 125 MLC-------------Y------------------------------IYDIFELTVMFDTMDKDGSLLLELQEFKEALPK 161 (226)
T ss_dssp HHH-------------H------------------------------HHHHHHHHHHHHHHSCSSCCEECHHHHHHHHHH
T ss_pred HHH-------------h------------------------------ccCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHH
Confidence 110 0 011246788999999999999999999999875
Q ss_pred C--CCCCC-CCCCCCccccccCCCcccHHHHHhhc
Q 008219 350 A--PECPW-DEAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 350 ~--~~~p~-~~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
. .+.+- ...........+..|.|+...|+...
T Consensus 162 ~~~~g~~~~e~~~~~~~~D~d~dG~Is~~EF~~~~ 196 (226)
T 2lvv_A 162 LKEWGVDITDATTVFNEIDTNGSGVVTFDEFSCWA 196 (226)
T ss_dssp HHHHTCCCCSCHHHHHHHCCSCSSCEEHHHHHHHH
T ss_pred HhhcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 3 12221 12222333445778899999888774
No 471
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.08 E-value=0.00072 Score=67.17 Aligned_cols=142 Identities=13% Similarity=0.110 Sum_probs=75.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHhcCCCC--CC--CC--CCCC-C--------e-eecccc-------------------
Q 008219 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFP--AN--VP--PVLP-P--------T-RLPEDF------------------- 58 (573)
Q Consensus 14 ~~~~kI~ivG~~~vGKSSLin~l~~~~~~--~~--~~--~~~~-~--------~-~~~~~~------------------- 58 (573)
.+.--|+++|++||||||+++.|.+.... .. .. .+.. . . +..+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 34567999999999999999998753100 00 00 0000 0 0 000000
Q ss_pred -cCCceeEEEEeCCCCccchhhh-H-----hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 008219 59 -YPDRVPITIIDTPSSVEDRGKL-G-----EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL 131 (573)
Q Consensus 59 -~~~~~~~~i~Dt~G~~~~~~~~-~-----~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D~ 131 (573)
...++.+.++||+|........ . ...-..|-.+++.|.+... ++.. .+..+... --.-++++||.|.
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~-~~~~~~~~--~~it~iilTKlD~ 280 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVE-QARQFNEA--VKIDGIILTKLDA 280 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHH-HHHHHHHH--SCCCEEEEECGGG
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHH-HHHHHHHh--cCCCEEEEeCcCC
Confidence 0123557789999975432211 1 1123478899999966543 2222 33333321 1234788999996
Q ss_pred CCCcccccHHHHHHHHHHHhcccCeEEEecCCCCCCchhH
Q 008219 132 RDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVPEV 171 (573)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (573)
... . -....+....+. |+..++ +|++++++
T Consensus 281 ~a~-----~-G~~l~~~~~~~~--pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 281 DAR-----G-GAALSISYVIDA--PILFVG--VGQGYDDL 310 (328)
T ss_dssp CSC-----C-HHHHHHHHHHTC--CEEEEE--CSSSTTCE
T ss_pred ccc-----h-hHHHHHHHHHCC--CEEEEe--CCCCcccc
Confidence 443 1 122344455552 677776 67776654
No 472
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=97.08 E-value=0.00028 Score=61.48 Aligned_cols=137 Identities=19% Similarity=0.248 Sum_probs=92.3
Q ss_pred hchhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHH
Q 008219 193 ALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFI 272 (573)
Q Consensus 193 ~~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~ 272 (573)
.+.++....++++|...|.+++|.++.+++..+-... +..+...++..+...+ ++.|+++.|+.+....+
T Consensus 9 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~---------~g~i~~~eF~~~~~~~~ 78 (153)
T 2ovk_B 9 KLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSL-GRVPPDDELNAMLKEC---------PGQLNFTAFLTLFGEKV 78 (153)
T ss_dssp TCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTT-TSCCCHHHHHHHHHHS---------SSCCCSHHHHHTTTTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHh-CCCCCHHHHHHHHHHc---------CCCCCHHHHHHHHHHHh
Confidence 3556677889999999999999999999988776553 4567777777666654 56699999987643100
Q ss_pred HcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCC
Q 008219 273 EKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPE 352 (573)
Q Consensus 273 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~ 352 (573)
. . ....+.+...|+.||.|++|.|+..|+..++...-.
T Consensus 79 ~---------------------------~---------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~ 116 (153)
T 2ovk_B 79 S---------------------------G---------------TDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGD 116 (153)
T ss_dssp T---------------------------T---------------CCCTTHHHHHHHTTCSSCSSCCCHHHHHHHHHHSSS
T ss_pred c---------------------------c---------------CChHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCC
Confidence 0 0 001235778999999999999999999999986421
Q ss_pred -C-CCCCCCCCccccccCCCcccHHHHHhhch
Q 008219 353 -C-PWDEAPYKDAAEKTALGGLSLDGFLSEWA 382 (573)
Q Consensus 353 -~-p~~~~~~~~~~~~~~~~~i~l~~~~~~w~ 382 (573)
. +............ ..|.|+...|+..+.
T Consensus 117 ~~~~~~~~~~~~~~d~-~dg~I~~~eF~~~~~ 147 (153)
T 2ovk_B 117 NFSKEEIKNVWKDAPL-KNKQFNYNKMVDIKG 147 (153)
T ss_dssp CCCHHHHHHHHHHCCE-ETTEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCC-CCCEEeHHHHHHHHh
Confidence 1 1111111112223 567788887776643
No 473
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.00048 Score=61.99 Aligned_cols=138 Identities=17% Similarity=0.284 Sum_probs=90.6
Q ss_pred hhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHHc
Q 008219 195 KPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEK 274 (573)
Q Consensus 195 ~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 274 (573)
+++-...++.+|...|.+++|.++.+|+..+-..+ +..++..++..+...+... .+..+.+..|+.+....
T Consensus 6 t~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~l-g~~~~~~~~~~~~~~~d~d-----~~~~i~~~ef~~~~~~~--- 76 (176)
T 2lhi_A 6 TEEQIAEFKEAFALFDKDNNGSISSSELATVMRSL-GLSPSEAEVNDLMNEIDVD-----GNHQIEFSEFLALMSRQ--- 76 (176)
T ss_dssp CTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHH-TCCCCHHHHHHHHTTTCSS-----CSSSBCTTHHHHHHTSS---
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHc-CCChhHHHHHHHHHHhCcC-----CCccchHHHHHHHHHHh---
Confidence 34445567889999999999999999998766554 5566776666554433211 23457888887664300
Q ss_pred CCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCC-C
Q 008219 275 GRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPE-C 353 (573)
Q Consensus 275 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~-~ 353 (573)
.. .....+.+...|+.||.|++|.|+..|+..++..... .
T Consensus 77 -------------------------~~--------------~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~ 117 (176)
T 2lhi_A 77 -------------------------LK--------------SNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKL 117 (176)
T ss_dssp -------------------------CC--------------SSHHHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTCCC
T ss_pred -------------------------cc--------------cCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCccc
Confidence 00 1123466889999999999999999999999986422 1
Q ss_pred C-CCCCCCCccccccCCCcccHHHHHhhc
Q 008219 354 P-WDEAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 354 p-~~~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
+ .....+..... +..|.|+.+.|.+.-
T Consensus 118 ~~~ei~~l~~~~d-d~dG~I~~~EF~~~m 145 (176)
T 2lhi_A 118 TDAEVDDMLREVS-DGSGEINIQQFAALL 145 (176)
T ss_dssp CHHHHHHHHHHHH-TTSSCBCTTHHHHHH
T ss_pred chHHHHHHHHhhc-CCCCeEeHHHHHHHH
Confidence 1 11111122222 678889999888764
No 474
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.03 E-value=6.6e-05 Score=71.90 Aligned_cols=76 Identities=9% Similarity=0.013 Sum_probs=49.0
Q ss_pred CChhHHHhhhccccccccccEEEEEEeCCChhhHHHHHHHHH---HHHhcCC-CCCCCCcEEEEEeC-CCCcccccchhh
Q 008219 485 IPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLV---EVASYGE-DTGFEVPCLIVAAK-DDLDSFAMAIQD 559 (573)
Q Consensus 485 ~G~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~---~~~~~~~-~~~~~~p~ilv~nK-~Dl~~~~~~~~~ 559 (573)
.|++.++++ |+.|+.++|++|+|+|++|++.++ ....+. .+..... .. ++|++|.+|| .|+... . .
T Consensus 195 GGQ~~lRpl--Wr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~--~apLLVfANKkQDlp~A-m---s 265 (312)
T 3l2o_B 195 GSRYSVIPQ--IQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSS--GRPLLVLSCISQGDVKR-M---P 265 (312)
T ss_dssp --CCCCCHH--HHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCT--TCCEEEEEEESSTTSCB-C---C
T ss_pred CCHHHHHHH--HHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcC--CCeEEEEeCCcccccCC-C---C
Confidence 467778888 999999999999999999987655 332222 2221110 01 8999999997 587542 2 2
Q ss_pred HHHHHHHcCC
Q 008219 560 STRVFTFLVM 569 (573)
Q Consensus 560 ~~~~~~~~~~ 569 (573)
+.++++.+++
T Consensus 266 ~~EI~e~L~L 275 (312)
T 3l2o_B 266 CFYLAHELHL 275 (312)
T ss_dssp HHHHHHHTTG
T ss_pred HHHHHHHcCC
Confidence 3345555554
No 475
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=97.03 E-value=0.00084 Score=59.02 Aligned_cols=143 Identities=11% Similarity=0.118 Sum_probs=89.2
Q ss_pred HHHHHHHHhccCCCCCccCchhhhHHhh---hhcCCCCChhHHHHHH--------HHHhhhccCCcc-CCCcChhhHHHH
Q 008219 200 RALKRIFILCDHDRDGALSDAELNDFQV---KCFNSPLQPSEIVGVK--------RVVQEKLREGVN-ERGLTLAGFLFL 267 (573)
Q Consensus 200 ~~l~~i~~~~~~~~~~~l~~~el~~~q~---~~~~~~l~~~~i~~l~--------~~i~~~~~~~~~-~~~~~~~~f~~~ 267 (573)
+.++++|...|.+++|.++.+|+..+.. ...+..++..++..+. ..+... ..+ ++.|+++.|+.+
T Consensus 4 ~~l~~~F~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~f~~~---D~d~~g~i~~~ef~~~ 80 (166)
T 3akb_A 4 RRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIA---DRDGDQRITREEFVTG 80 (166)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHH---CTTSSSCEEHHHHHHT
T ss_pred HHHHHHHhHHcCCCCCCcCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHh---CCCCCCcCcHHHHHHH
Confidence 4578899999999999999999988743 3457778888887765 222222 223 334999999987
Q ss_pred HHHHHHcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhc
Q 008219 268 HALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLF 347 (573)
Q Consensus 268 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f 347 (573)
.......... .+.....+.+..+|+.+|.|++|.|+..|+..++
T Consensus 81 ~~~~~~~~~~------------------------------------~~~~~~~~~~~~~F~~~D~d~~G~i~~~E~~~~l 124 (166)
T 3akb_A 81 AVKRLRDKPD------------------------------------RFAEMARPFLHAALGVADTDGDGAVTVADTARAL 124 (166)
T ss_dssp HHHHHHHSHH------------------------------------HHHHHHHHHHHHHHHHHCSSSSSCCBHHHHHHHH
T ss_pred HHHHhccCcc------------------------------------chHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHH
Confidence 6654321100 0001113446778888888888888888888877
Q ss_pred ccCCCCCCCCCCCCccccccCCCcccHHHHHhhc
Q 008219 348 STAPECPWDEAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 348 ~~~~~~p~~~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
......+............+..|.|+...|....
T Consensus 125 ~~~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~ 158 (166)
T 3akb_A 125 TAFGVPEDLARQAAAALDTDGDGKVGETEIVPAF 158 (166)
T ss_dssp HHTTCCHHHHHHHHHHHCTTCSSBCCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 6543101111111222334667777777776653
No 476
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=97.02 E-value=0.0013 Score=59.91 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=91.0
Q ss_pred HHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHHcCCcch
Q 008219 200 RALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRLET 279 (573)
Q Consensus 200 ~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 279 (573)
+.++++|...|.+++|.++.+|+..+. ...+..+...+++.+.+.+... .++.|+++.|+.+...
T Consensus 27 ~~l~~~F~~~D~d~~G~I~~~El~~~l-~~~~~~~~~~~~~~l~~~~D~d-----~dG~I~~~EF~~~~~~--------- 91 (191)
T 1y1x_A 27 QELMEWFRAVDTDGSGAISVPELNAAL-SSAGVPFSLATTEKLLHMYDKN-----HSGEITFDEFKDLHHF--------- 91 (191)
T ss_dssp SCHHHHHHHHCTTCSSSBCHHHHHHHH-CBTTBCCCHHHHHHHHHHHCTT-----CSSSBCHHHHHHHHHH---------
T ss_pred HHHHHHHHHHcCCCCCcCcHHHHHHHH-HHcCCCCCHHHHHHHHHHhCCC-----CCCeEcHHHHHHHHHH---------
Confidence 457888999999999999999988877 3445567777777766655322 2445999999887551
Q ss_pred hhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCC-CC-CCC
Q 008219 280 TWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPE-CP-WDE 357 (573)
Q Consensus 280 ~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~-~p-~~~ 357 (573)
.+.+...|+.+|.|++|.|+..|+..++...-. .+ ...
T Consensus 92 ----------------------------------------~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~ 131 (191)
T 1y1x_A 92 ----------------------------------------ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTF 131 (191)
T ss_dssp ----------------------------------------HHHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHH
T ss_pred ----------------------------------------HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHH
Confidence 134667899999999999999999998876421 11 111
Q ss_pred CCCCccccccCCCcccHHHHHhhchh
Q 008219 358 APYKDAAEKTALGGLSLDGFLSEWAL 383 (573)
Q Consensus 358 ~~~~~~~~~~~~~~i~l~~~~~~w~~ 383 (573)
.........+..|.|+...|+..+..
T Consensus 132 ~~~~~~~D~d~dg~i~~~eF~~~~~~ 157 (191)
T 1y1x_A 132 QALMRKFDRQRRGSLGFDDYVELSIF 157 (191)
T ss_dssp HHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 11222334567888999999888664
No 477
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=97.01 E-value=0.00082 Score=60.17 Aligned_cols=140 Identities=16% Similarity=0.285 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHHc
Q 008219 195 KPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEK 274 (573)
Q Consensus 195 ~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 274 (573)
.++....++++|...|.+.+|.++.+|+..+... .+..+...++..+...+... .++.|+++.|+.+.......
T Consensus 6 ~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~D~~-----~~g~i~~~EF~~~~~~~~~~ 79 (179)
T 2f2o_A 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDAD-----GNGTIDFPEFLTMMARKMKD 79 (179)
T ss_dssp CCSHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT-----CSSSBCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhccC-----CCCCCcHHHHHHHHHHHccC
Confidence 3445667889999999999999999998877655 45566777776666555322 24459999999887643311
Q ss_pred CCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCCCC
Q 008219 275 GRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECP 354 (573)
Q Consensus 275 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p 354 (573)
......+..+|+.||.|++|.|+.+|+..++..... +
T Consensus 80 ------------------------------------------~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~g~-~ 116 (179)
T 2f2o_A 80 ------------------------------------------TDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE-K 116 (179)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHC---C
T ss_pred ------------------------------------------cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-C
Confidence 112344667888888888888888888887766421 1
Q ss_pred CC---CCCCCccccccCCCcccHHHHHhhchh
Q 008219 355 WD---EAPYKDAAEKTALGGLSLDGFLSEWAL 383 (573)
Q Consensus 355 ~~---~~~~~~~~~~~~~~~i~l~~~~~~w~~ 383 (573)
.. ..........+..|.|+...|+..+.-
T Consensus 117 ~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 148 (179)
T 2f2o_A 117 LTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148 (179)
T ss_dssp CCHHHHHHHHHHHCTTCSSSEEHHHHHHHSCC
T ss_pred CCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 11 011111223466677777777766543
No 478
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.98 E-value=0.0015 Score=67.50 Aligned_cols=113 Identities=12% Similarity=0.151 Sum_probs=63.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHh-------cCCC---CCC--CCCCC----------CCeee-------cc--------c
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAA-------ADTF---PAN--VPPVL----------PPTRL-------PE--------D 57 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~-------~~~~---~~~--~~~~~----------~~~~~-------~~--------~ 57 (573)
+...|+++|.+||||||++..|. +.+. ..+ .+... +.... +. .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999887 3221 000 01000 00000 00 0
Q ss_pred ccCCceeEEEEeCCCCccchh-hhH-----hhhccCCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEeCCC
Q 008219 58 FYPDRVPITIIDTPSSVEDRG-KLG-----EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLD 130 (573)
Q Consensus 58 ~~~~~~~~~i~Dt~G~~~~~~-~~~-----~~~~~ad~il~v~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~D 130 (573)
....++.+.|+||||...... ... ..+..+|.+++|+|+...... .. ....+.. ..+ .-+|.||+|
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~-~~~~f~~---~l~i~gvVlnK~D 251 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---AN-TAKAFNE---ALPLTGVVLTKVD 251 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HH-HHHHHHH---HSCCCCEEEECTT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HH-HHHHHhc---cCCCeEEEEecCC
Confidence 112467899999999654322 111 224578999999998754322 21 2223322 345 347999999
Q ss_pred CCCC
Q 008219 131 LRDE 134 (573)
Q Consensus 131 ~~~~ 134 (573)
....
T Consensus 252 ~~~~ 255 (433)
T 2xxa_A 252 GDAR 255 (433)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 7654
No 479
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.97 E-value=0.0012 Score=64.80 Aligned_cols=82 Identities=15% Similarity=0.047 Sum_probs=46.1
Q ss_pred EEEEEEecCChhH--HH-hhhc---cccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCC
Q 008219 477 KKTVVLREIPEEA--VA-KLLS---NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDD 549 (573)
Q Consensus 477 ~~~~i~dt~G~~~--~~-~~~~---~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D 549 (573)
..++++||+|... .. .++. .......+|.+++|+|+..... .......+.. ..| ..+|.||+|
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-------~~~i~gvVlnk~D 250 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-------ASKIGTIIITKMD 250 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-------TCTTEEEEEECGG
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-------hCCCCEEEEeCCC
Confidence 4688999999644 11 1100 0012347899999999875421 2222223322 244 677889999
Q ss_pred CcccccchhhHHHHHHHcCCcc
Q 008219 550 LDSFAMAIQDSTRVFTFLVMVL 571 (573)
Q Consensus 550 l~~~~~~~~~~~~~~~~~~~~~ 571 (573)
.... ...+..++...++|.
T Consensus 251 ~~~~---~g~~~~~~~~~~~pi 269 (297)
T 1j8m_F 251 GTAK---GGGALSAVAATGATI 269 (297)
T ss_dssp GCTT---HHHHHHHHHTTTCCE
T ss_pred CCcc---hHHHHHHHHHHCcCE
Confidence 7642 233445666666553
No 480
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=96.95 E-value=0.0011 Score=61.20 Aligned_cols=157 Identities=16% Similarity=0.201 Sum_probs=94.5
Q ss_pred chhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCC-CCChhHHHHHHHHHhhhc--cCCcc-CCCcChhhHHHHHH
Q 008219 194 LKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNS-PLQPSEIVGVKRVVQEKL--REGVN-ERGLTLAGFLFLHA 269 (573)
Q Consensus 194 ~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~-~l~~~~i~~l~~~i~~~~--~~~~~-~~~~~~~~f~~~~~ 269 (573)
+.++....++++|...|.+.+|.++.+|+..+-..+... .+...++..+...+ ..+ ....+ ++.|+++.|+.+..
T Consensus 30 l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~~~~~~~~~~l~~~~-~~lf~~~D~d~dg~i~~~EF~~~~~ 108 (208)
T 2hpk_A 30 LHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAV-RVFFLHKGVEPVNGLLREDWVEANR 108 (208)
T ss_dssp ------CHHHHHHHHHCTTCSSEECHHHHTHHHHHHHHHSCCCHHHHHHHHHHH-HHHHHHTTCBTTTBEEGGGHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHH-HHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 334445678889999999999999999988777654321 56677777776333 111 11233 33499999998865
Q ss_pred HHHHcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhccc
Q 008219 270 LFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFST 349 (573)
Q Consensus 270 ~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~ 349 (573)
..-. +.-.+.+. . -| ..-.+.+..+|+.||.|++|.|+..|+..++..
T Consensus 109 ~~~~-------~~~~~~~~------~----~~---------------~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~ 156 (208)
T 2hpk_A 109 VFAE-------AERERERR------G----EP---------------SLIALLSNSYYDVLDDDGDGTVDVDELKTMMKA 156 (208)
T ss_dssp HHHH-------HHHHHHHT------T----CC---------------CHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred HHhh-------hhhhhhcc------C----Ch---------------HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence 2000 00000000 0 01 112234778999999999999999999999876
Q ss_pred CCCCCCCCCCCCccccccCCCcccHHHHHhhchh
Q 008219 350 APECPWDEAPYKDAAEKTALGGLSLDGFLSEWAL 383 (573)
Q Consensus 350 ~~~~p~~~~~~~~~~~~~~~~~i~l~~~~~~w~~ 383 (573)
....+............+..|.|+...|+..+.-
T Consensus 157 ~g~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~ 190 (208)
T 2hpk_A 157 FDVPQEAAYTFFEKADTDKSGKLERTELVHLFRK 190 (208)
T ss_dssp TTSCTTHHHHHHHHHCTTCCSSBCHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 5411111112222334577889999999887654
No 481
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.95 E-value=0.00052 Score=70.60 Aligned_cols=82 Identities=9% Similarity=-0.014 Sum_probs=45.4
Q ss_pred eEEEEEEecCChhH-------HHhhhccccccccccEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCC
Q 008219 476 TKKTVVLREIPEEA-------VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKD 548 (573)
Q Consensus 476 ~~~~~i~dt~G~~~-------~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 548 (573)
...++|+||+|... ...+ .........+.+++|+|++....- ......+... -.+..+|.||+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el-~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~------~~~~gVIlTKl 248 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEM-KEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQA------SPIGSVIITKM 248 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHH-HHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHH------CSSEEEEEECG
T ss_pred CCCEEEEECCCCccccCCHHHHHHH-HHHHHhhCCcceEEEEeCccchHH---HHHHHHHhcc------cCCcEEEEecc
Confidence 45678999999422 1111 000111246899999999875332 2222333322 24567889999
Q ss_pred CCcccccchhhHHHHHHHcCCc
Q 008219 549 DLDSFAMAIQDSTRVFTFLVMV 570 (573)
Q Consensus 549 Dl~~~~~~~~~~~~~~~~~~~~ 570 (573)
|.... ...+...+...++|
T Consensus 249 D~~a~---~G~als~~~~~g~P 267 (433)
T 3kl4_A 249 DGTAK---GGGALSAVVATGAT 267 (433)
T ss_dssp GGCSC---HHHHHHHHHHHTCE
T ss_pred ccccc---chHHHHHHHHHCCC
Confidence 97642 22344444455555
No 482
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=96.88 E-value=0.0014 Score=59.61 Aligned_cols=143 Identities=14% Similarity=0.173 Sum_probs=98.7
Q ss_pred chhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHH
Q 008219 194 LKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIE 273 (573)
Q Consensus 194 ~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~ 273 (573)
+.++....++++|...|.+++|.++.+|+..+...+ +.... .+++.+...+... .++.|+++.|+.+.....
T Consensus 46 l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~-g~~~~-~~~~~l~~~~D~d-----~~g~i~~~EF~~~~~~~~- 117 (191)
T 3k21_A 46 SNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKD-GLKLP-YNFDLLLDQIDSD-----GSGKIDYTEFIAAALDRK- 117 (191)
T ss_dssp CCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHT-TCCCC-TTHHHHHHHHCTT-----CSSSEEHHHHHHHHSCGG-
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHc-CCCcH-HHHHHHHHHhCCC-----CCCeEeHHHHHHHHHhhh-
Confidence 345566778999999999999999999998877665 33444 5666555544222 244599999998763222
Q ss_pred cCCcchhhHHHhhhcCCCCcccccccC-CCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhc
Q 008219 274 KGRLETTWTVLRKFGYNNDIKLADELI-PYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLF 347 (573)
Q Consensus 274 ~~~~~~~w~~l~~~~y~~~l~~~~~~~-p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f 347 (573)
....+.++.+.+.+.-+.+-.+..+.+ . .+. .......++....+.+..+|+.+|.|+||.|+.+|...++
T Consensus 118 ~~~~~~l~~~F~~~D~d~~G~Is~~El~~--~l~-~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~ 189 (191)
T 3k21_A 118 QLSKKLIYCAFRVFDVDNDGEITTAELAH--ILY-NGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMM 189 (191)
T ss_dssp GCCHHHHHHHHHHHSTTCSSCBCHHHHHH--HHH-HSSSCSCCCHHHHHHHHHHHHHHCSSSSSSBCHHHHHHHH
T ss_pred hccHHHHHHHHHHhCCCCCCcCCHHHHHH--HHH-hcCCCCCCCHhHHHHHHHHHHHhcCCCCCeECHHHHHHHH
Confidence 244567778899998888877765444 2 010 0111223555555678899999999999999999887765
No 483
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.87 E-value=0.0036 Score=69.90 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC
Q 008219 16 GVRIVVCGEKGTGKSSLIVTAAAD 39 (573)
Q Consensus 16 ~~kI~ivG~~~vGKSSLin~l~~~ 39 (573)
.-.|+++|+||||||++++.+...
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999988754
No 484
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=96.85 E-value=0.0014 Score=58.33 Aligned_cols=131 Identities=18% Similarity=0.302 Sum_probs=91.7
Q ss_pred HHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHHcCCcch
Q 008219 200 RALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRLET 279 (573)
Q Consensus 200 ~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 279 (573)
..++++|...|.+.+|.++.+|+..+.......+++..+++.+...+... .++.|+++.|..+...
T Consensus 7 ~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~D~~-----~~g~i~~~ef~~~~~~--------- 72 (172)
T 2znd_A 7 SFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRE-----NKAGVNFSEFTGVWKY--------- 72 (172)
T ss_dssp HHHHHHHHHHCTTCSSCEEHHHHHHHCCCSSSSCCCHHHHHHHHHHHCSS-----SSSEECHHHHHHHHHH---------
T ss_pred hHHHHHHHHhCCCCCCcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCC-----CCCcCCHHHHHHHHHH---------
Confidence 45778899999999999999999887776554677777777766555221 2344999999887541
Q ss_pred hhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCCC-C-CCC
Q 008219 280 TWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPEC-P-WDE 357 (573)
Q Consensus 280 ~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~-p-~~~ 357 (573)
.+.+..+|+.||.|++|.|+..|+..++...... + ...
T Consensus 73 ----------------------------------------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~ 112 (172)
T 2znd_A 73 ----------------------------------------ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFH 112 (172)
T ss_dssp ----------------------------------------HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHH
Confidence 1346678999999999999999999888765211 1 001
Q ss_pred CCCCccccccCCCcccHHHHHhhchhh
Q 008219 358 APYKDAAEKTALGGLSLDGFLSEWALM 384 (573)
Q Consensus 358 ~~~~~~~~~~~~~~i~l~~~~~~w~~~ 384 (573)
.........+..|.|+...|+..+...
T Consensus 113 ~~~~~~~d~~~dg~i~~~eF~~~~~~~ 139 (172)
T 2znd_A 113 DILIRKFDRQGRGQIAFDDFIQGCIVL 139 (172)
T ss_dssp HHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 111222334678889999998887643
No 485
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.84 E-value=0.0017 Score=66.98 Aligned_cols=27 Identities=30% Similarity=0.204 Sum_probs=23.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHhcC
Q 008219 13 GKTGVRIVVCGEKGTGKSSLIVTAAAD 39 (573)
Q Consensus 13 ~~~~~kI~ivG~~~vGKSSLin~l~~~ 39 (573)
..+..-|+|+|++++|||+|+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 345667999999999999999999863
No 486
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=96.83 E-value=0.00053 Score=60.13 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=94.1
Q ss_pred chhhHHHHHHHHHHhcc--CCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHH
Q 008219 194 LKPRCVRALKRIFILCD--HDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALF 271 (573)
Q Consensus 194 ~~~~~~~~l~~i~~~~~--~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~ 271 (573)
+.++....++++|...| .+++|.++..++..+-... +..++..++..+...+ . ..++.|+++.|+.+....
T Consensus 3 ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~l-g~~~~~~~~~~l~~~~----d--~~~g~i~~~eF~~~~~~~ 75 (159)
T 2ovk_C 3 LTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCL-GMNPTEAQVHQHGGTK----K--MGEKAYKLEEILPIYEEM 75 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSSEEEGGGHHHHHHHT-TCCCCHHHHHHTTCCS----S--TTSCEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHc-CCCCCHHHHHHHHHHh----c--CCCCeEcHHHHHHHHHHH
Confidence 34556677899999999 9999999999998776654 4556666555443333 1 134569999998876421
Q ss_pred HHcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCC
Q 008219 272 IEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAP 351 (573)
Q Consensus 272 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~ 351 (573)
... . + ....+.+...|+.||.|++|.|+..|+..++...-
T Consensus 76 ~~~-~------------------------~---------------~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g 115 (159)
T 2ovk_C 76 SSK-D------------------------T---------------GTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLG 115 (159)
T ss_dssp TTC-S------------------------T---------------TCCHHHHHHHHHHTCTTSSSEECHHHHHHHHHHSS
T ss_pred hhc-c------------------------C---------------CCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhC
Confidence 100 0 0 01135678899999999999999999999988642
Q ss_pred C--CCCCCCCCCc--cccccCCCcccHHHHHhhchh
Q 008219 352 E--CPWDEAPYKD--AAEKTALGGLSLDGFLSEWAL 383 (573)
Q Consensus 352 ~--~p~~~~~~~~--~~~~~~~~~i~l~~~~~~w~~ 383 (573)
. .+........ ..-.+..|.|+...|+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~ 151 (159)
T 2ovk_C 116 ERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMA 151 (159)
T ss_dssp SCCCHHHHHHHHHHTTCCCCTTCCEEHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCCCCCcEeHHHHHHHHhc
Confidence 1 1111112222 334567888888888876543
No 487
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.83 E-value=0.004 Score=61.14 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHhc
Q 008219 15 TGVRIVVCGEKGTGKSSLIVTAAA 38 (573)
Q Consensus 15 ~~~kI~ivG~~~vGKSSLin~l~~ 38 (573)
+.-.|+|+|++|||||||++.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999999874
No 488
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.81 E-value=0.0011 Score=56.71 Aligned_cols=131 Identities=17% Similarity=0.246 Sum_probs=90.6
Q ss_pred HHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHHcCCcchhh
Q 008219 202 LKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRLETTW 281 (573)
Q Consensus 202 l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~w 281 (573)
++++|...|.+.+|.++.+++..+.... +..+...++..+... -.++.|+++.|+.+......
T Consensus 7 l~~~F~~~D~d~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~--------~~~g~i~~~eF~~~~~~~~~-------- 69 (145)
T 2bl0_B 7 IQECFQIFDKDNDGKVSIEELGSALRSL-GKNPTNAELNTIKGQ--------LNAKEFDLATFKTVYRKPIK-------- 69 (145)
T ss_dssp HHHHHHHHCTTCSSCEEGGGHHHHHHHT-TCCCCHHHHHHHHHH--------HTSSEECHHHHHHHHTSCCC--------
T ss_pred HHHHHHHhCCCCcCccCHHHHHHHHHHh-CCCCCHHHHHHHHHh--------cCCCeEcHHHHHHHHHHHhh--------
Confidence 8889999999999999999998876664 556677777666554 12445999999887541100
Q ss_pred HHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCCCC--CCCCC
Q 008219 282 TVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECP--WDEAP 359 (573)
Q Consensus 282 ~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p--~~~~~ 359 (573)
-.......+..+|+.+|.|++|.|+..|+..++....... .....
T Consensus 70 ---------------------------------~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~ 116 (145)
T 2bl0_B 70 ---------------------------------TPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEE 116 (145)
T ss_dssp ---------------------------------CGGGGHHHHHHHHHHHCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHH
T ss_pred ---------------------------------cCcccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHH
Confidence 0122345678899999999999999999999987652211 11111
Q ss_pred CCccccccCCCcccHHHHHhhch
Q 008219 360 YKDAAEKTALGGLSLDGFLSEWA 382 (573)
Q Consensus 360 ~~~~~~~~~~~~i~l~~~~~~w~ 382 (573)
.......+..|.|+...|+..+.
T Consensus 117 ~~~~~d~~~dg~i~~~eF~~~~~ 139 (145)
T 2bl0_B 117 LMKEVSVSGDGAINYESFVDMLV 139 (145)
T ss_dssp HHTTCCCCTTSEEEHHHHHHHHH
T ss_pred HHHHcCCCCCCcEeHHHHHHHHH
Confidence 22233456778899998887754
No 489
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.75 E-value=0.001 Score=68.63 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.7
Q ss_pred CceEEEEEEcCCCCChhHHHHHhhCC
Q 008219 426 RNVFQCFVFGPKKAGKSVLLNSFLGR 451 (573)
Q Consensus 426 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 451 (573)
.+..-|+|+|++++|||+|+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 35667999999999999999999863
No 490
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=96.73 E-value=0.0016 Score=57.92 Aligned_cols=128 Identities=19% Similarity=0.227 Sum_probs=88.5
Q ss_pred HHHHHHHHhccCCCCCccCchhhhHHhhhhcC-------CCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHH
Q 008219 200 RALKRIFILCDHDRDGALSDAELNDFQVKCFN-------SPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFI 272 (573)
Q Consensus 200 ~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~-------~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~ 272 (573)
+.++++|...| +++|.++.+|+..+....++ ..++..+++.+...+... .++.|+++.|..+...
T Consensus 4 ~~l~~~F~~~D-d~~G~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~~l~~~~D~~-----~~g~i~~~eF~~~~~~-- 75 (173)
T 1alv_A 4 RQFRRLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSD-----TTGKLGFEEFKYLWNN-- 75 (173)
T ss_dssp HHHHHHHHHHH-GGGTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTT-----CSSSBCHHHHHHHHHH--
T ss_pred hHHHHHHHHHh-CCCCCcCHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHcCC-----CCCccCHHHHHHHHHH--
Confidence 45778888889 99999999999888877643 566666776666655322 2344999999887551
Q ss_pred HcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCC
Q 008219 273 EKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPE 352 (573)
Q Consensus 273 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~ 352 (573)
.+.+..+|+.||.|++|.|+..|+..++.....
T Consensus 76 -----------------------------------------------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~ 108 (173)
T 1alv_A 76 -----------------------------------------------IKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGF 108 (173)
T ss_dssp -----------------------------------------------HHHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTC
T ss_pred -----------------------------------------------HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCC
Confidence 134677899999999999999999988876421
Q ss_pred CC--CCCCCCCccccccCCCcccHHHHHhhchh
Q 008219 353 CP--WDEAPYKDAAEKTALGGLSLDGFLSEWAL 383 (573)
Q Consensus 353 ~p--~~~~~~~~~~~~~~~~~i~l~~~~~~w~~ 383 (573)
.+ ........... +..|.|+...|+..+..
T Consensus 109 ~~~~~~~~~~~~~~d-d~dg~i~~~eF~~~~~~ 140 (173)
T 1alv_A 109 HLNEHLYSMIIRRYS-DEGGNMDFDNFISCLVR 140 (173)
T ss_dssp CCCHHHHHHHHHHHT-CSSSCBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHH
Confidence 11 00011111122 67788999999887654
No 491
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=96.73 E-value=0.0011 Score=68.22 Aligned_cols=141 Identities=17% Similarity=0.281 Sum_probs=93.3
Q ss_pred hchhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHH
Q 008219 193 ALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFI 272 (573)
Q Consensus 193 ~~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~ 272 (573)
.+.++....++++|...|.+.+|.++.+|+..+...+ +..+...+++.+...+... .+..|+++.|+.++....
T Consensus 305 ~ls~eei~el~~~F~~fD~D~dG~Is~~EL~~~L~~l-g~~~s~eel~~Lf~~~D~D-----gdG~IsfeEFl~ll~~~~ 378 (450)
T 3sg6_A 305 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDAD-----GNGTIDFPEFLTMMARKM 378 (450)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHT-TCCCCHHHHHHHHHTTCTT-----SSSSEEHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhccC-----CCCcccHHHHHHHHHhhc
Confidence 3455667889999999999999999999998877664 4556666666555443211 244599999998765211
Q ss_pred HcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCC
Q 008219 273 EKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPE 352 (573)
Q Consensus 273 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~ 352 (573)
.. ....+.+..+|+.||.|++|.|+.+|+..++...-.
T Consensus 379 ~~------------------------------------------~~~~e~l~~aFk~fD~D~dG~Is~eELr~~L~~lG~ 416 (450)
T 3sg6_A 379 KD------------------------------------------TDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 416 (450)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTC
T ss_pred cc------------------------------------------cchhhHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCC
Confidence 00 111345778999999999999999999999876421
Q ss_pred -CC-CCCCCCCccccccCCCcccHHHHHhhc
Q 008219 353 -CP-WDEAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 353 -~p-~~~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
.+ -....+......+..|.|+.+.|+++.
T Consensus 417 ~ls~eei~~Lf~~~D~D~DG~IsfdEFv~~L 447 (450)
T 3sg6_A 417 KLTDEEVDEMIREADIDGDGQVNYEEFVQMM 447 (450)
T ss_dssp CCCHHHHHHHHHHHCTTSSSSEEHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 11 001111122334677888888888764
No 492
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=96.72 E-value=0.00041 Score=63.10 Aligned_cols=134 Identities=17% Similarity=0.204 Sum_probs=85.9
Q ss_pred HHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHHcCCcc
Q 008219 199 VRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRLE 278 (573)
Q Consensus 199 ~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 278 (573)
...++++|...|.+.+|.++.+|+..+.... +..+...++..+...+... .+..|+++.|+.+...+ ..
T Consensus 9 ~~~l~~~F~~~D~d~dG~I~~~E~~~~l~~~-g~~~~~~~~~~l~~~~D~d-----~dG~I~~~EF~~~~~~~----~~- 77 (188)
T 1s6i_A 9 IGGLKELFKMIDTDNSGTITFDELKDGLKRV-GSELMESEIKDLMDAADID-----KSGTIDYGEFIAATVHL----NK- 77 (188)
T ss_dssp TCSHHHHHHTTSSSSSSCEEHHHHHHHHTTT-TCCCCHHHHHHHHHHTCTT-----CSSEECHHHHHHHHTTS----SS-
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCC-----CCCeEeHHHHHHHHHHH----hc-
Confidence 3457788999999999999999988776654 4566777766655544221 23349999998764310 00
Q ss_pred hhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCCCCCCCC
Q 008219 279 TTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWDEA 358 (573)
Q Consensus 279 ~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~~~ 358 (573)
.+ . .+.+..+|+.||.|++|.|+..|+..++......+....
T Consensus 78 ---------------------~~-------~----------~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~g~~~~~~~ 119 (188)
T 1s6i_A 78 ---------------------LE-------R----------EENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHID 119 (188)
T ss_dssp ---------------------SC-------C----------CCSTHHHHHHTTTTCSSEEEHHHHHHTTTTTTCCTTHHH
T ss_pred ---------------------cC-------H----------HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHH
Confidence 00 0 012467899999999999999999988876432121111
Q ss_pred CCCccccccCCCcccHHHHHhhc
Q 008219 359 PYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 359 ~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
........+..|.|+...|+...
T Consensus 120 ~~~~~~D~d~dG~Is~~EF~~~~ 142 (188)
T 1s6i_A 120 DMIKEIDQDNDGQIDYGEFAAMM 142 (188)
T ss_dssp HHHHHHCSSSSSEEETTHHHHTT
T ss_pred HHHHHHCCCCCCcEeHHHHHHHH
Confidence 12223344667778888777663
No 493
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=96.72 E-value=0.002 Score=55.80 Aligned_cols=135 Identities=17% Similarity=0.180 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHHHcCC
Q 008219 197 RCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGR 276 (573)
Q Consensus 197 ~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 276 (573)
+-.+.++++|...|.+++|.++.+|+..+.. ... ...+..+...+... .++.|+++.|+.+...+..
T Consensus 3 ~~~~~l~~~F~~~D~d~~G~i~~~el~~l~~-~~~----~~~~~~~~~~~D~~-----~~g~i~~~ef~~~~~~~~~--- 69 (155)
T 3ll8_B 3 DEIKRLGKRFKKLDLDNSGSLSVEEFMSLPE-LQQ----NPLVQRVIDIFDTD-----GNGEVDFKEFIEGVSQFSV--- 69 (155)
T ss_dssp HHHHHHHHHHHHHCTTCSSSBCHHHHTTSGG-GTT----CTTHHHHHHHHCTT-----CSSSBCHHHHHHHHGGGCS---
T ss_pred HHHHHHHHHHHHhCcCCCCeEcHHHHHHhhc-ccc----chHHHHHHHHHCCC-----CCCcCcHHHHHHHHHHHcc---
Confidence 3456688899999999999999999833222 211 11444444433221 2445999999887641110
Q ss_pred cchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCCCCCC
Q 008219 277 LETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWD 356 (573)
Q Consensus 277 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~ 356 (573)
.....+.+..+|+.+|.|++|.|+.+|+..++....+.+..
T Consensus 70 ---------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~ 110 (155)
T 3ll8_B 70 ---------------------------------------KGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLK 110 (155)
T ss_dssp ---------------------------------------SCCHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHGGGSC
T ss_pred ---------------------------------------cCCHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccCCC
Confidence 01223567889999999999999999999988763121211
Q ss_pred ---CCCCCcc----ccccCCCcccHHHHHhhchh
Q 008219 357 ---EAPYKDA----AEKTALGGLSLDGFLSEWAL 383 (573)
Q Consensus 357 ---~~~~~~~----~~~~~~~~i~l~~~~~~w~~ 383 (573)
....... .-.+..|.|+...|...+.-
T Consensus 111 ~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 144 (155)
T 3ll8_B 111 DTQLQQIVDKTIINADKDGDGRISFEEFCAVVGG 144 (155)
T ss_dssp HHHHHHHHHHHHHHHCTTSSSSBCHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 1111112 34567788888888777554
No 494
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=96.71 E-value=0.00058 Score=58.96 Aligned_cols=136 Identities=15% Similarity=0.172 Sum_probs=88.4
Q ss_pred HHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCcc-CCCcChhhHHHHHHHHHHcCCcchh
Q 008219 202 LKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVN-ERGLTLAGFLFLHALFIEKGRLETT 280 (573)
Q Consensus 202 l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~ 280 (573)
++++|...|.+++|.++..++..+-... +..++..++..+...+. ..+ ++.|+++.|+.+........
T Consensus 6 l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~l~~~~~-----D~~~~g~i~~~eF~~~~~~~~~~~----- 74 (148)
T 1m45_A 6 NKDIFTLFDKKGQGAIAKDSLGDYLRAI-GYNPTNQLVQDIINADS-----SLRDASSLTLDQITGLIEVNEKEL----- 74 (148)
T ss_dssp CTTCHHHHCTTCCSEEEGGGHHHHHHHT-TCCCCHHHHHHHHHC-------CC--CCEEEHHHHHHHHHHTHHHH-----
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHhh-----CCCCCCeEcHHHHHHHHHHHHhhc-----
Confidence 4567888999999999999988776654 55667776666654431 122 34599999998876431000
Q ss_pred hHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCCCCCC---C
Q 008219 281 WTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWD---E 357 (573)
Q Consensus 281 w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p~~---~ 357 (573)
.... + ...+.+...|+.||.|++|.|+..|+..++..... +.. .
T Consensus 75 ----~~~~------------~----------------~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~-~~~~~~~ 121 (148)
T 1m45_A 75 ----DATT------------K----------------AKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGE-KLTDAEV 121 (148)
T ss_dssp ----HGGG------------C----------------CCTHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSTT-CCCHHHH
T ss_pred ----cccc------------c----------------ccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCC-CCCHHHH
Confidence 0000 0 01245778999999999999999999999886521 111 1
Q ss_pred CCCCccccccCCCcccHHHHHhhc
Q 008219 358 APYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 358 ~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
.........+..|.|+...|+..+
T Consensus 122 ~~~~~~~d~d~dg~i~~~eF~~~~ 145 (148)
T 1m45_A 122 DELLKGVEVDSNGEIDYKKFIEDV 145 (148)
T ss_dssp HHHHTTCCCCTTSEEEHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEeHHHHHHHH
Confidence 122223345678889998888764
No 495
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=96.71 E-value=0.0052 Score=53.68 Aligned_cols=135 Identities=20% Similarity=0.279 Sum_probs=88.7
Q ss_pred hhchhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHH
Q 008219 192 QALKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALF 271 (573)
Q Consensus 192 ~~~~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~ 271 (573)
..++++-..-++.+|...|.+++|.++..++...-+. .+......++..+.. . .+..|++..|+.+....
T Consensus 8 ~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~-lg~~~~~~~~~~~~~---~------~~~~i~f~ef~~~~~~~ 77 (153)
T 3i5g_B 8 VKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSS-LGRVPPDDELNAMLK---E------CPGQLNFTAFLTLFGEK 77 (153)
T ss_dssp TTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHH-TTSCCCHHHHHHHHH---T------SSSCCCSHHHHHTTTTT
T ss_pred cCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHH-cCCCccHHHHHHHHH---h------ccCCccHHHHHHHHHhh
Confidence 4467777888999999999999999999999877665 455666666554432 1 13347777777663210
Q ss_pred HHcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCC
Q 008219 272 IEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAP 351 (573)
Q Consensus 272 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~ 351 (573)
+ . .. ...+.++..|+.||.|++|.|+..|+..++...-
T Consensus 78 ~----------------------------~------~~--------~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g 115 (153)
T 3i5g_B 78 V----------------------------S------GT--------DPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMG 115 (153)
T ss_dssp T----------------------------T------TC--------CCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSS
T ss_pred h----------------------------c------cc--------ccHHHHHHHHhccccCCCCeEeHHHHHHHHHHcC
Confidence 0 0 00 0135688999999999999999999999997642
Q ss_pred CCCCC---CCCCCccccccCCCcccHHHHHhh
Q 008219 352 ECPWD---EAPYKDAAEKTALGGLSLDGFLSE 380 (573)
Q Consensus 352 ~~p~~---~~~~~~~~~~~~~~~i~l~~~~~~ 380 (573)
.+.. ...+....-.+ .|.|+...|+..
T Consensus 116 -~~ls~~ei~~~~~~~D~~-dG~I~y~EF~~~ 145 (153)
T 3i5g_B 116 -DNFSKEEIKNVWKDAPLK-NKQFNYNKMVDI 145 (153)
T ss_dssp -SCCCHHHHHHHHTTCCEE-TTEECHHHHHHH
T ss_pred -CcCCHHHHHHHHHHhCCC-cCEEcHHHHHHH
Confidence 1211 01111122234 677777777654
No 496
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=96.70 E-value=0.00036 Score=63.25 Aligned_cols=145 Identities=17% Similarity=0.157 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCC---CCChhHHHHHHHHHhhhcc-CCcc-CCCcChhhHHHHHHH
Q 008219 196 PRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNS---PLQPSEIVGVKRVVQEKLR-EGVN-ERGLTLAGFLFLHAL 270 (573)
Q Consensus 196 ~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~---~l~~~~i~~l~~~i~~~~~-~~~~-~~~~~~~~f~~~~~~ 270 (573)
++....++++|...|.+.+|.++.+|+..+-..++.. +....+.......+..... ...+ ++.|+++.|+.+...
T Consensus 36 ~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~~g~i~~~ef~~~~~~ 115 (191)
T 3khe_A 36 LEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEFVTVCMD 115 (191)
T ss_dssp TTTTHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHTCTTCSSSEEHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence 3445668889999999999999999988776665221 1111122222222222211 1223 345999999887431
Q ss_pred HHHcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccC
Q 008219 271 FIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTA 350 (573)
Q Consensus 271 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~ 350 (573)
... ....+.+..+|+.+|.|++|.|+.+|+..++...
T Consensus 116 ~~~-------------------------------------------~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~ 152 (191)
T 3khe_A 116 KQL-------------------------------------------LLSRERLLAAFQQFDSDGSGKITNEELGRLFGVT 152 (191)
T ss_dssp HHH-------------------------------------------HCCHHHHHHHHHHHCTTCSSEECHHHHHHHTTSS
T ss_pred hcc-------------------------------------------cchHHHHHHHHHHHCCCCcCcCCHHHHHHHHccC
Confidence 100 0113457889999999999999999999999822
Q ss_pred CCCCCCCCCCCccccccCCCcccHHHHHhhchh
Q 008219 351 PECPWDEAPYKDAAEKTALGGLSLDGFLSEWAL 383 (573)
Q Consensus 351 ~~~p~~~~~~~~~~~~~~~~~i~l~~~~~~w~~ 383 (573)
+..+-...........+..|.|+...|...+.-
T Consensus 153 ~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 185 (191)
T 3khe_A 153 EVDDETWHQVLQECDKNNDGEVDFEEFVEMMQK 185 (191)
T ss_dssp CCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 211111111222334567888999988887654
No 497
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=96.70 E-value=0.0044 Score=53.92 Aligned_cols=144 Identities=15% Similarity=0.226 Sum_probs=91.6
Q ss_pred chhhHHHHHHHHHHhcc-CCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCccCCCcChhhHHHHHHHHH
Q 008219 194 LKPRCVRALKRIFILCD-HDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFI 272 (573)
Q Consensus 194 ~~~~~~~~l~~i~~~~~-~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~ 272 (573)
+.++....++++|...| .+.+|.++.+++..+-.. ++..+...++..+...+... .+..|+++.|+.+.....
T Consensus 7 l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~D~~-----~~g~i~~~eF~~~~~~~~ 80 (158)
T 2jnf_A 7 LSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEV-LGIQQTKSTIRQLIDEFDPF-----GNGDIDFDSFKIIGARFL 80 (158)
T ss_dssp SCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHH-TTCSCSHHHHHHHHHHHCTT-----CCSEECHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCC-----CCCcCcHHHHHHHHHHHh
Confidence 44556677899999999 999999999999877665 45567777777666655322 234599999999877543
Q ss_pred HcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCC
Q 008219 273 EKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPE 352 (573)
Q Consensus 273 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~ 352 (573)
..... | ......+..+|+.||.|++|.|+.+|+..++.....
T Consensus 81 ~~~~~-----------------------~---------------~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~ 122 (158)
T 2jnf_A 81 GEEVN-----------------------P---------------EQMQQELREAFRLYDKEGNGYISTDVMREILAELDE 122 (158)
T ss_dssp CCCCC-----------------------T---------------TTTSSTHHHHHHHHCSSSSSSEEHHHHHHHHHHHCT
T ss_pred ccccc-----------------------h---------------hhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCC
Confidence 22100 0 001123567788888888888888888877765321
Q ss_pred C-C-CCCCCCCccccccCCCcccHHHHHhhc
Q 008219 353 C-P-WDEAPYKDAAEKTALGGLSLDGFLSEW 381 (573)
Q Consensus 353 ~-p-~~~~~~~~~~~~~~~~~i~l~~~~~~w 381 (573)
. + -...........+..|.|+...|+...
T Consensus 123 ~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~ 153 (158)
T 2jnf_A 123 TLSSEDLDAMIDEIDADGSGTVDFEEFMGVM 153 (158)
T ss_dssp TCCHHHHHHHHHHHCSSCCSEECSHHHHHHT
T ss_pred cCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 1 1 111112222334667778887777654
No 498
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=96.69 E-value=0.00067 Score=59.18 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=91.1
Q ss_pred hhhHHHHHHHHHHhccC--CCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCcc-CCCcChhhHHHHHHHH
Q 008219 195 KPRCVRALKRIFILCDH--DRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVN-ERGLTLAGFLFLHALF 271 (573)
Q Consensus 195 ~~~~~~~l~~i~~~~~~--~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~-~~~~~~~~f~~~~~~~ 271 (573)
.++....++++|...|. +.+|.++.+++..+-... +..+...++..+ ..+ ..+ ++.|+++.|+.+....
T Consensus 4 s~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~l-~~~------D~~~~g~i~~~eF~~~~~~~ 75 (156)
T 1wdc_C 4 SQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCL-GINPRNEDVFAV-GGT------HKMGEKSLPFEEFLPAYEGL 75 (156)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHT-TCCCCHHHHHHT-TCC------SSTTSCEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHc-CCCCCHHHHHHH-Hhh------CCCCCCeeeHHHHHHHHHHH
Confidence 34556678899999999 999999999988776654 456666655544 221 223 3459999999887644
Q ss_pred HHcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCC
Q 008219 272 IEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAP 351 (573)
Q Consensus 272 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~ 351 (573)
... . ....+.+..+|+.||.|++|.|+..|+..++....
T Consensus 76 ~~~--~---------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g 114 (156)
T 1wdc_C 76 MDC--E---------------------------------------QGTFADYMEAFKTFDREGQGFISGAELRHVLTALG 114 (156)
T ss_dssp TTS--C---------------------------------------CCCHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSS
T ss_pred hhc--c---------------------------------------CChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcC
Confidence 311 0 01134577899999999999999999999887642
Q ss_pred CC-C-CCCCCCCcc--ccccCCCcccHHHHHhhch
Q 008219 352 EC-P-WDEAPYKDA--AEKTALGGLSLDGFLSEWA 382 (573)
Q Consensus 352 ~~-p-~~~~~~~~~--~~~~~~~~i~l~~~~~~w~ 382 (573)
.. + ......... ...+..|.|+...|+....
T Consensus 115 ~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 149 (156)
T 1wdc_C 115 ERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVM 149 (156)
T ss_dssp SCCCHHHHHHHHHHHTCCCCTTSEEEHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCcEeHHHHHHHHh
Confidence 11 1 111111222 3456677888888877643
No 499
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=96.68 E-value=0.0012 Score=61.48 Aligned_cols=145 Identities=14% Similarity=0.127 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhcc---CCcc-CCCcChhhHHHHHHH
Q 008219 195 KPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLR---EGVN-ERGLTLAGFLFLHAL 270 (573)
Q Consensus 195 ~~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~---~~~~-~~~~~~~~f~~~~~~ 270 (573)
.++....++++|...|.+.+|.++.+|+...-...++......++..+...+-.... ..++ +..|+++.|+.+...
T Consensus 43 s~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~I~~~EF~~~~~~ 122 (219)
T 3cs1_A 43 TAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLM 122 (219)
T ss_dssp SHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCGGGTCSCHHHHHHHHHHHHHHHHHHHHTSCCCSSBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhhhhccCCCCcCCHHHHHHHHHH
Confidence 345566788999999999999999999987776655655555666554432211110 0112 445889999887542
Q ss_pred HHHcCCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccC
Q 008219 271 FIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTA 350 (573)
Q Consensus 271 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~ 350 (573)
... ....+.+..+|+.||.|++|.|+..|+..++...
T Consensus 123 ~~~-------------------------------------------~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~ 159 (219)
T 3cs1_A 123 LCY-------------------------------------------IYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKL 159 (219)
T ss_dssp HHH-------------------------------------------HHHHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHH
T ss_pred Hhc-------------------------------------------cchHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh
Confidence 210 0113457789999999999999999999998653
Q ss_pred ---CCCCCCCCCCCccccccCCCcccHHHHHhhch
Q 008219 351 ---PECPWDEAPYKDAAEKTALGGLSLDGFLSEWA 382 (573)
Q Consensus 351 ---~~~p~~~~~~~~~~~~~~~~~i~l~~~~~~w~ 382 (573)
+..+.....+......+..|.|+...|+....
T Consensus 160 g~~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~ 194 (219)
T 3cs1_A 160 EAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWAS 194 (219)
T ss_dssp HHHTCCCSCHHHHHHHHCTTSSSEEEHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 22222222223334457788999999887643
No 500
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=96.66 E-value=0.002 Score=57.94 Aligned_cols=132 Identities=16% Similarity=0.219 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHhccCCCCCccCchhhhHHhhhhcCCCCChhHHHHHHHHHhhhccCCcc-CCCcChhhHHHHHHHHHHc
Q 008219 196 PRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNSPLQPSEIVGVKRVVQEKLREGVN-ERGLTLAGFLFLHALFIEK 274 (573)
Q Consensus 196 ~~~~~~l~~i~~~~~~~~~~~l~~~el~~~q~~~~~~~l~~~~i~~l~~~i~~~~~~~~~-~~~~~~~~f~~~~~~~~~~ 274 (573)
++....++++|...|.+.+|.++.+|+..+-.... ....++..+...+. .+ +..|+++.|+.+....
T Consensus 35 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g---~~~~~~~~~~~~~D------~d~~g~i~~~Ef~~~~~~~--- 102 (180)
T 3mse_B 35 NNHIKYINELFYKLDTNHNGSLSHREIYTVLASVG---IKKWDINRILQALD------INDRGNITYTEFMAGCYRW--- 102 (180)
T ss_dssp HHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTT---CCHHHHHHHHHHHC------TTCCSEECHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcC---CCHHHHHHHHHHhC------CCCCCcCcHHHHHHHHHhc---
Confidence 55567889999999999999999999888776553 23444444444332 23 3349999998654300
Q ss_pred CCcchhhHHHhhhcCCCCcccccccCCCCCCCCCCCCceecCHhHHHHHHHHHhhhCCCCCCCCChHhhhhhcccCCCCC
Q 008219 275 GRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECP 354 (573)
Q Consensus 275 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~ls~~~~~~~~~~f~~~~~~~~~~l~~~~~~~~f~~~~~~p 354 (573)
. . ...+.+..+|+.||.|++|.|+.+|+..++...+..+
T Consensus 103 -------------~------------~----------------~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~ 141 (180)
T 3mse_B 103 -------------K------------N----------------IESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKVLDN 141 (180)
T ss_dssp -------------T------------T----------------C--CHHHHHHHHHCTTCSSCBCHHHHHHHTTTSSCCH
T ss_pred -------------c------------c----------------CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHcCCCCCH
Confidence 0 0 0014577899999999999999999999998322111
Q ss_pred CCCCCCCccccccCC--------CcccHHHHHhh
Q 008219 355 WDEAPYKDAAEKTAL--------GGLSLDGFLSE 380 (573)
Q Consensus 355 ~~~~~~~~~~~~~~~--------~~i~l~~~~~~ 380 (573)
-...........+.. |.|+.+.|...
T Consensus 142 ~~~~~~~~~~d~~~d~~~~~~~~G~i~~~eF~~~ 175 (180)
T 3mse_B 142 NDIDNFFLSVHSIKKGIPREHIINKISFQEFKDY 175 (180)
T ss_dssp HHHHHHHHHHHTC---------CCCBCHHHHHHH
T ss_pred HHHHHHHHHhhhccCcccccccCCeeeHHHHHHH
Confidence 111111112223334 78888887765
Done!