Query 008221
Match_columns 573
No_of_seqs 479 out of 3936
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 21:02:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 8E-117 2E-121 918.3 42.4 502 54-570 39-542 (674)
2 KOG0925 mRNA splicing factor A 100.0 2E-116 4E-121 876.8 41.4 515 43-570 24-539 (699)
3 KOG0923 mRNA splicing factor A 100.0 4E-116 8E-121 901.5 40.4 503 55-569 254-757 (902)
4 KOG0924 mRNA splicing factor A 100.0 3E-113 7E-118 880.7 37.5 500 58-570 348-848 (1042)
5 COG1643 HrpA HrpA-like helicas 100.0 8E-102 2E-106 852.3 43.9 507 44-569 28-547 (845)
6 KOG0920 ATP-dependent RNA heli 100.0 2.3E-98 5E-103 820.1 33.3 512 45-569 152-697 (924)
7 PRK11131 ATP-dependent RNA hel 100.0 6.5E-96 1E-100 831.2 43.7 486 60-568 68-564 (1294)
8 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.1E-94 6.7E-99 820.8 43.5 485 61-568 62-555 (1283)
9 KOG0926 DEAH-box RNA helicase 100.0 9.6E-91 2.1E-95 725.0 36.9 505 55-568 245-885 (1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.4E-86 9.5E-91 739.4 40.8 446 65-532 1-448 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 1.8E-83 3.9E-88 720.2 39.9 445 63-528 2-449 (812)
12 PHA02653 RNA helicase NPH-II; 100.0 1.1E-59 2.4E-64 515.4 28.0 400 69-511 167-595 (675)
13 KOG0921 Dosage compensation co 100.0 2.9E-55 6.3E-60 463.4 18.6 500 53-566 365-928 (1282)
14 KOG0330 ATP-dependent RNA heli 100.0 2.1E-49 4.5E-54 387.8 13.5 340 41-421 58-409 (476)
15 KOG0331 ATP-dependent RNA heli 100.0 3.1E-47 6.6E-52 396.3 21.6 341 45-422 92-451 (519)
16 COG0513 SrmB Superfamily II DN 100.0 1.3E-45 2.8E-50 399.2 21.4 337 44-419 29-380 (513)
17 KOG0328 Predicted ATP-dependen 100.0 1.6E-45 3.5E-50 346.2 19.2 341 41-421 24-375 (400)
18 KOG0345 ATP-dependent RNA heli 100.0 3.3E-44 7.2E-49 358.8 16.8 357 45-439 5-386 (567)
19 KOG0338 ATP-dependent RNA heli 100.0 1.3E-44 2.9E-49 364.0 12.3 340 43-421 180-535 (691)
20 KOG0333 U5 snRNP-like RNA heli 100.0 1.2E-43 2.6E-48 358.5 16.8 342 40-420 241-625 (673)
21 KOG0343 RNA Helicase [RNA proc 100.0 1.2E-43 2.5E-48 360.1 14.9 341 43-421 68-424 (758)
22 PRK11776 ATP-dependent RNA hel 100.0 7.5E-43 1.6E-47 376.5 21.4 337 44-421 4-351 (460)
23 PTZ00110 helicase; Provisional 100.0 9.8E-43 2.1E-47 380.2 21.8 345 39-421 125-486 (545)
24 KOG0340 ATP-dependent RNA heli 100.0 4.5E-43 9.7E-48 339.7 15.5 337 42-421 5-363 (442)
25 KOG0326 ATP-dependent RNA heli 100.0 5.6E-43 1.2E-47 334.1 15.2 340 41-421 82-431 (459)
26 PRK11634 ATP-dependent RNA hel 100.0 8.6E-42 1.9E-46 376.1 22.7 337 44-421 6-354 (629)
27 PRK04837 ATP-dependent RNA hel 100.0 6.1E-42 1.3E-46 365.6 19.7 338 44-421 8-364 (423)
28 KOG0342 ATP-dependent RNA heli 100.0 1.6E-41 3.5E-46 341.8 18.8 340 43-421 81-439 (543)
29 PLN00206 DEAD-box ATP-dependen 100.0 2.9E-41 6.3E-46 367.5 22.1 347 38-421 115-477 (518)
30 PRK04537 ATP-dependent RNA hel 100.0 1.4E-40 3.1E-45 364.4 22.9 337 45-421 10-366 (572)
31 PRK10590 ATP-dependent RNA hel 100.0 9.7E-41 2.1E-45 358.9 21.1 337 45-421 2-354 (456)
32 KOG0332 ATP-dependent RNA heli 100.0 6.2E-41 1.3E-45 326.5 16.0 349 36-421 82-445 (477)
33 PRK11192 ATP-dependent RNA hel 100.0 2.7E-40 5.8E-45 354.4 21.6 338 45-421 2-354 (434)
34 PRK01297 ATP-dependent RNA hel 100.0 2.4E-39 5.3E-44 350.3 23.2 340 42-421 85-444 (475)
35 PRK01172 ski2-like helicase; P 100.0 1.6E-38 3.5E-43 357.6 30.2 439 45-513 2-494 (674)
36 KOG0339 ATP-dependent RNA heli 100.0 5.5E-40 1.2E-44 330.3 15.6 345 39-422 218-578 (731)
37 PTZ00424 helicase 45; Provisio 100.0 6.1E-39 1.3E-43 340.8 21.1 339 43-421 27-376 (401)
38 KOG0336 ATP-dependent RNA heli 100.0 7E-39 1.5E-43 314.9 15.5 343 40-421 215-574 (629)
39 KOG0335 ATP-dependent RNA heli 100.0 2.1E-39 4.6E-44 332.1 12.2 344 40-418 70-443 (482)
40 KOG0347 RNA helicase [RNA proc 100.0 1.8E-39 3.9E-44 329.7 11.0 343 42-421 179-572 (731)
41 KOG0348 ATP-dependent RNA heli 100.0 1.9E-38 4.1E-43 321.4 17.7 374 43-443 135-579 (708)
42 KOG0341 DEAD-box protein abstr 100.0 2E-39 4.2E-44 316.7 9.0 356 27-421 153-530 (610)
43 PRK02362 ski2-like helicase; P 100.0 3.8E-37 8.3E-42 348.8 28.4 437 45-511 2-514 (737)
44 TIGR03817 DECH_helic helicase/ 100.0 3.7E-36 7.9E-41 337.7 21.9 338 50-418 20-385 (742)
45 KOG0327 Translation initiation 100.0 9.7E-37 2.1E-41 300.0 14.3 339 40-421 22-372 (397)
46 KOG0346 RNA helicase [RNA proc 100.0 1.9E-36 4.1E-41 300.6 14.6 340 42-421 17-412 (569)
47 PRK00254 ski2-like helicase; P 100.0 2.9E-35 6.2E-40 332.7 25.4 445 45-523 2-521 (720)
48 KOG0334 RNA helicase [RNA proc 100.0 3.3E-35 7.1E-40 320.7 14.7 352 32-421 353-722 (997)
49 KOG4284 DEAD box protein [Tran 100.0 1.2E-34 2.6E-39 298.9 14.6 342 43-420 24-380 (980)
50 TIGR00614 recQ_fam ATP-depende 100.0 5.6E-33 1.2E-37 299.7 21.1 312 61-421 6-335 (470)
51 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.4E-32 2.9E-37 303.6 23.7 357 62-459 12-431 (844)
52 PRK11057 ATP-dependent DNA hel 100.0 6E-33 1.3E-37 307.2 20.6 321 51-421 9-345 (607)
53 KOG0350 DEAD-box ATP-dependent 100.0 1.6E-33 3.5E-38 283.9 14.1 345 41-421 124-542 (620)
54 PLN03137 ATP-dependent DNA hel 100.0 1.3E-32 2.9E-37 307.6 21.5 328 45-421 436-789 (1195)
55 KOG0337 ATP-dependent RNA heli 100.0 8.8E-34 1.9E-38 280.5 9.5 340 43-421 20-370 (529)
56 KOG0344 ATP-dependent RNA heli 100.0 3.4E-32 7.4E-37 280.7 14.4 343 40-421 128-497 (593)
57 PRK13767 ATP-dependent helicas 100.0 8.8E-30 1.9E-34 291.7 24.7 334 51-415 18-396 (876)
58 TIGR01389 recQ ATP-dependent D 100.0 2.5E-30 5.4E-35 287.0 19.5 309 62-421 9-333 (591)
59 TIGR00580 mfd transcription-re 100.0 5.1E-29 1.1E-33 282.8 21.0 315 53-419 438-770 (926)
60 PRK10689 transcription-repair 100.0 1.2E-28 2.7E-33 285.3 19.1 309 53-418 588-918 (1147)
61 PRK10917 ATP-dependent DNA hel 100.0 9E-28 1.9E-32 268.9 22.1 303 64-417 259-587 (681)
62 TIGR00643 recG ATP-dependent D 100.0 1.6E-27 3.6E-32 265.1 20.0 314 55-417 225-564 (630)
63 COG1202 Superfamily II helicas 100.0 4.4E-27 9.6E-32 240.8 20.7 438 42-525 192-678 (830)
64 TIGR01587 cas3_core CRISPR-ass 100.0 4.3E-27 9.3E-32 246.1 20.4 292 83-420 1-337 (358)
65 COG1201 Lhr Lhr-like helicases 99.9 1.6E-26 3.4E-31 254.3 23.9 389 50-476 7-438 (814)
66 PRK09751 putative ATP-dependen 99.9 9.8E-27 2.1E-31 271.0 18.4 297 86-411 1-375 (1490)
67 TIGR03158 cas3_cyano CRISPR-as 99.9 6.9E-26 1.5E-30 235.6 22.0 288 70-405 1-357 (357)
68 PRK09401 reverse gyrase; Revie 99.9 4.9E-26 1.1E-30 264.4 14.7 293 65-405 79-429 (1176)
69 COG0514 RecQ Superfamily II DN 99.9 8.2E-25 1.8E-29 232.8 15.9 310 62-421 13-339 (590)
70 KOG0329 ATP-dependent RNA heli 99.9 3.9E-25 8.4E-30 206.0 10.6 307 44-425 42-361 (387)
71 COG1204 Superfamily II helicas 99.9 1.5E-23 3.2E-28 233.8 22.9 434 49-510 14-525 (766)
72 PRK14701 reverse gyrase; Provi 99.9 1.5E-24 3.2E-29 257.1 14.1 329 54-421 67-458 (1638)
73 PRK12898 secA preprotein trans 99.9 2.4E-23 5.2E-28 225.8 20.1 123 261-421 457-588 (656)
74 KOG0349 Putative DEAD-box RNA 99.9 2.7E-24 5.7E-29 213.5 9.5 226 161-417 339-613 (725)
75 PHA02558 uvsW UvsW helicase; P 99.9 4.7E-23 1E-27 223.8 19.1 293 64-411 112-443 (501)
76 PRK13766 Hef nuclease; Provisi 99.9 5.5E-23 1.2E-27 235.8 20.1 111 277-421 363-481 (773)
77 COG1111 MPH1 ERCC4-like helica 99.9 5.9E-23 1.3E-27 209.6 17.6 317 64-419 13-481 (542)
78 TIGR01054 rgy reverse gyrase. 99.9 5.9E-23 1.3E-27 239.1 17.9 289 55-377 67-412 (1171)
79 PRK09200 preprotein translocas 99.9 2.2E-22 4.8E-27 222.8 20.2 314 64-421 76-543 (790)
80 TIGR03714 secA2 accessory Sec 99.9 3.1E-21 6.7E-26 211.8 23.0 126 263-429 410-545 (762)
81 COG1205 Distinct helicase fami 99.9 1.1E-21 2.4E-26 221.8 19.9 328 55-417 59-420 (851)
82 KOG0354 DEAD-box like helicase 99.9 2.4E-21 5.1E-26 208.8 17.8 325 62-420 58-530 (746)
83 PRK09694 helicase Cas3; Provis 99.9 1.8E-20 3.9E-25 211.2 21.9 303 65-407 285-662 (878)
84 TIGR00963 secA preprotein tran 99.9 3.1E-21 6.7E-26 210.5 14.1 122 262-421 390-519 (745)
85 PRK05580 primosome assembly pr 99.8 9.1E-20 2E-24 203.8 17.5 310 66-414 144-544 (679)
86 COG4098 comFA Superfamily II D 99.8 1.1E-18 2.3E-23 170.0 21.7 300 62-415 95-412 (441)
87 TIGR00603 rad25 DNA repair hel 99.8 6E-19 1.3E-23 193.9 21.9 299 65-422 254-610 (732)
88 KOG0921 Dosage compensation co 99.8 3E-21 6.5E-26 206.2 2.6 441 62-523 402-887 (1282)
89 KOG0351 ATP-dependent DNA heli 99.8 4.5E-19 9.7E-24 199.5 15.6 314 60-421 258-594 (941)
90 PF04408 HA2: Helicase associa 99.8 1.4E-19 3E-24 153.3 7.1 91 469-559 1-102 (102)
91 KOG0952 DNA/RNA helicase MER3/ 99.8 1.2E-17 2.5E-22 182.5 23.5 444 63-525 107-638 (1230)
92 TIGR00595 priA primosomal prot 99.8 1.9E-18 4.1E-23 186.7 14.1 296 86-419 2-382 (505)
93 PRK04914 ATP-dependent helicas 99.7 1.4E-17 2.9E-22 189.3 14.9 120 270-420 484-606 (956)
94 KOG0352 ATP-dependent DNA heli 99.7 1.8E-17 3.9E-22 165.2 13.7 308 68-421 22-364 (641)
95 KOG0951 RNA helicase BRR2, DEA 99.7 7.5E-17 1.6E-21 178.2 17.5 463 50-533 295-851 (1674)
96 COG1126 GlnQ ABC-type polar am 99.7 2.7E-17 5.8E-22 152.2 9.6 149 77-233 24-204 (240)
97 smart00847 HA2 Helicase associ 99.7 2.3E-17 5E-22 137.3 7.5 90 469-559 1-92 (92)
98 COG1116 TauB ABC-type nitrate/ 99.7 4.4E-17 9.6E-22 155.2 10.3 148 77-233 25-199 (248)
99 COG1136 SalX ABC-type antimicr 99.7 9.3E-17 2E-21 152.9 10.6 150 77-233 27-210 (226)
100 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 2E-16 4.3E-21 152.8 9.9 142 78-227 27-200 (254)
101 COG1135 AbcC ABC-type metal io 99.7 1.6E-16 3.5E-21 154.5 9.1 152 77-235 28-212 (339)
102 COG4581 Superfamily II RNA hel 99.7 3.3E-15 7.2E-20 167.6 20.0 327 64-418 117-536 (1041)
103 PRK11448 hsdR type I restricti 99.7 5.5E-15 1.2E-19 171.7 21.6 114 278-417 697-813 (1123)
104 COG1120 FepC ABC-type cobalami 99.7 1.9E-16 4.1E-21 153.8 7.8 157 77-234 24-208 (258)
105 KOG0353 ATP-dependent DNA heli 99.6 6.1E-15 1.3E-19 145.1 17.9 324 47-421 74-469 (695)
106 COG1117 PstB ABC-type phosphat 99.6 4.1E-16 8.9E-21 143.7 8.3 163 77-243 29-229 (253)
107 KOG0948 Nuclear exosomal RNA h 99.6 5.7E-16 1.2E-20 163.8 10.2 321 66-419 129-539 (1041)
108 PRK13104 secA preprotein trans 99.6 3.9E-15 8.4E-20 165.3 16.4 121 262-420 429-588 (896)
109 COG1061 SSL2 DNA or RNA helica 99.6 1.4E-14 3.1E-19 154.7 19.0 290 63-407 33-376 (442)
110 COG1203 CRISPR-associated heli 99.6 1.3E-14 2.8E-19 164.0 18.2 195 184-417 338-548 (733)
111 COG1200 RecG RecG-like helicas 99.6 5.5E-15 1.2E-19 157.7 13.8 306 64-420 260-592 (677)
112 TIGR00631 uvrb excinuclease AB 99.6 4.5E-15 9.7E-20 164.4 12.5 114 278-420 441-554 (655)
113 PRK05298 excinuclease ABC subu 99.6 1.6E-14 3.4E-19 161.2 15.4 112 278-418 445-556 (652)
114 PRK12906 secA preprotein trans 99.6 1.3E-14 2.7E-19 160.5 14.1 204 182-429 319-561 (796)
115 COG3638 ABC-type phosphate/pho 99.6 3.9E-15 8.4E-20 139.7 8.5 155 78-233 27-216 (258)
116 cd00268 DEADc DEAD-box helicas 99.6 6.5E-15 1.4E-19 141.3 10.4 181 46-228 1-186 (203)
117 COG1124 DppF ABC-type dipeptid 99.6 6.1E-15 1.3E-19 139.4 9.9 151 78-234 30-211 (252)
118 COG1127 Ttg2A ABC-type transpo 99.6 5.7E-15 1.2E-19 139.0 9.4 153 77-235 30-216 (263)
119 COG1125 OpuBA ABC-type proline 99.6 2.5E-15 5.4E-20 142.0 6.9 152 77-233 23-204 (309)
120 COG3839 MalK ABC-type sugar tr 99.6 4.6E-15 1E-19 149.6 8.8 149 77-226 25-194 (338)
121 COG3840 ThiQ ABC-type thiamine 99.6 6.5E-15 1.4E-19 132.4 7.9 149 77-232 21-197 (231)
122 COG2884 FtsE Predicted ATPase 99.6 1.2E-14 2.7E-19 131.6 9.1 143 77-227 24-198 (223)
123 PRK12904 preprotein translocas 99.5 1E-13 2.2E-18 153.9 17.3 121 262-420 415-574 (830)
124 COG4525 TauB ABC-type taurine 99.5 2.7E-14 5.8E-19 129.8 9.0 146 77-231 27-198 (259)
125 KOG0947 Cytoplasmic exosomal R 99.5 8E-14 1.7E-18 151.2 14.3 332 54-419 282-723 (1248)
126 COG1131 CcmA ABC-type multidru 99.5 2.6E-14 5.6E-19 144.5 10.0 150 78-234 28-206 (293)
127 PRK12900 secA preprotein trans 99.5 4.2E-14 9.2E-19 157.2 12.1 204 182-429 477-719 (1025)
128 cd00079 HELICc Helicase superf 99.5 4.1E-14 8.9E-19 125.3 9.7 104 278-415 27-131 (131)
129 COG3842 PotA ABC-type spermidi 99.5 1.8E-14 3.9E-19 146.2 7.9 150 77-233 27-205 (352)
130 COG1118 CysA ABC-type sulfate/ 99.5 2.1E-14 4.5E-19 139.5 7.9 156 77-233 24-206 (345)
131 TIGR02314 ABC_MetN D-methionin 99.5 4.7E-14 1E-18 145.3 10.8 149 78-233 28-209 (343)
132 PRK11650 ugpC glycerol-3-phosp 99.5 5E-14 1.1E-18 146.2 10.6 149 78-233 27-203 (356)
133 TIGR01186 proV glycine betaine 99.5 5E-14 1.1E-18 145.9 10.6 150 78-234 16-199 (363)
134 PRK13537 nodulation ABC transp 99.5 4.9E-14 1.1E-18 143.7 10.3 156 78-235 30-208 (306)
135 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.5 6.6E-14 1.4E-18 136.0 10.2 150 78-228 27-203 (218)
136 PRK11432 fbpC ferric transport 99.5 6.8E-14 1.5E-18 144.8 10.6 150 78-234 29-206 (351)
137 TIGR00960 3a0501s02 Type II (G 99.5 5.4E-14 1.2E-18 136.4 9.3 142 78-227 26-199 (216)
138 KOG0950 DNA polymerase theta/e 99.5 3.6E-13 7.9E-18 147.2 16.5 339 52-421 209-613 (1008)
139 COG1122 CbiO ABC-type cobalt t 99.5 4.5E-14 9.7E-19 137.0 8.2 150 77-233 26-207 (235)
140 TIGR03265 PhnT2 putative 2-ami 99.5 8.2E-14 1.8E-18 144.4 10.4 150 78-234 27-204 (353)
141 COG4555 NatA ABC-type Na+ tran 99.5 3.8E-14 8.2E-19 129.6 6.8 157 77-235 24-203 (245)
142 cd03226 ABC_cobalt_CbiO_domain 99.5 8.6E-14 1.9E-18 133.9 9.6 148 78-233 23-194 (205)
143 cd03293 ABC_NrtD_SsuB_transpor 99.5 1.1E-13 2.3E-18 134.8 10.3 147 78-233 27-200 (220)
144 cd03261 ABC_Org_Solvent_Resist 99.5 9.5E-14 2.1E-18 136.5 10.1 150 77-233 22-205 (235)
145 PRK13536 nodulation factor exp 99.5 1E-13 2.3E-18 142.9 10.8 156 78-235 64-242 (340)
146 PRK09452 potA putrescine/sperm 99.5 1E-13 2.3E-18 144.4 10.6 156 78-234 37-214 (375)
147 cd03259 ABC_Carb_Solutes_like 99.5 1E-13 2.3E-18 134.1 9.7 150 77-233 22-199 (213)
148 TIGR01188 drrA daunorubicin re 99.5 9.4E-14 2E-18 141.6 9.6 150 77-234 15-193 (302)
149 PRK11607 potG putrescine trans 99.5 1.3E-13 2.8E-18 144.0 10.8 150 78-234 42-219 (377)
150 TIGR02673 FtsE cell division A 99.5 1.3E-13 2.8E-18 133.6 10.0 149 77-233 24-205 (214)
151 cd03256 ABC_PhnC_transporter A 99.5 1.2E-13 2.6E-18 136.3 9.8 151 77-228 23-207 (241)
152 COG1197 Mfd Transcription-repa 99.5 1.3E-12 2.8E-17 147.1 19.0 296 69-420 597-914 (1139)
153 PRK10851 sulfate/thiosulfate t 99.5 1.5E-13 3.3E-18 142.4 10.7 156 78-234 25-206 (353)
154 cd03298 ABC_ThiQ_thiamine_tran 99.5 1.6E-13 3.4E-18 132.7 10.1 156 77-233 20-197 (211)
155 PRK11000 maltose/maltodextrin 99.5 1.5E-13 3.2E-18 143.6 10.6 149 78-233 26-202 (369)
156 COG0411 LivG ABC-type branched 99.5 1.3E-13 2.9E-18 130.4 8.9 150 78-234 27-219 (250)
157 PF00271 Helicase_C: Helicase 99.5 3.8E-14 8.1E-19 114.0 4.4 71 312-407 7-77 (78)
158 TIGR01166 cbiO cobalt transpor 99.5 1.8E-13 4E-18 129.9 9.9 142 78-227 15-188 (190)
159 PRK12899 secA preprotein trans 99.5 2E-12 4.3E-17 143.8 19.1 144 47-194 65-225 (970)
160 PRK11629 lolD lipoprotein tran 99.5 2.3E-13 5E-18 133.6 10.5 145 77-228 31-208 (233)
161 PRK11153 metN DL-methionine tr 99.5 2E-13 4.3E-18 141.4 10.5 149 78-233 28-209 (343)
162 PRK09536 btuD corrinoid ABC tr 99.5 2E-13 4.3E-18 143.2 10.3 155 78-234 26-208 (402)
163 TIGR02315 ABC_phnC phosphonate 99.5 1.7E-13 3.8E-18 135.4 9.4 145 77-228 24-208 (243)
164 PRK10070 glycine betaine trans 99.5 2.3E-13 4.9E-18 142.7 10.7 149 78-233 51-233 (400)
165 TIGR02211 LolD_lipo_ex lipopro 99.5 2.4E-13 5.1E-18 132.4 10.1 144 78-228 28-204 (221)
166 TIGR01288 nodI ATP-binding ABC 99.5 2.3E-13 5E-18 138.8 10.4 154 78-233 27-203 (303)
167 cd03296 ABC_CysA_sulfate_impor 99.5 2.4E-13 5.1E-18 134.0 10.1 155 78-233 25-205 (239)
168 cd03230 ABC_DR_subfamily_A Thi 99.5 3.2E-13 7E-18 126.2 10.2 119 78-227 23-156 (173)
169 TIGR03608 L_ocin_972_ABC putat 99.4 2.6E-13 5.7E-18 130.6 9.8 143 78-228 21-196 (206)
170 PRK13543 cytochrome c biogenes 99.4 3.1E-13 6.7E-18 130.9 10.3 142 78-227 34-198 (214)
171 PRK10584 putative ABC transpor 99.4 3.1E-13 6.7E-18 132.2 10.4 144 78-228 33-209 (228)
172 cd03258 ABC_MetN_methionine_tr 99.4 2.7E-13 5.8E-18 133.1 10.0 156 77-233 27-209 (233)
173 PRK11144 modC molybdate transp 99.4 2.7E-13 5.8E-18 140.9 10.3 149 78-233 21-197 (352)
174 cd03225 ABC_cobalt_CbiO_domain 99.4 2.8E-13 6E-18 131.0 9.6 142 78-227 24-195 (211)
175 cd03269 ABC_putative_ATPase Th 99.4 2.5E-13 5.4E-18 131.2 9.3 153 78-233 23-196 (210)
176 cd03265 ABC_DrrA DrrA is the A 99.4 2.9E-13 6.4E-18 131.6 9.8 156 77-233 22-200 (220)
177 cd03301 ABC_MalK_N The N-termi 99.4 2.9E-13 6.3E-18 131.0 9.7 143 78-227 23-192 (213)
178 cd03266 ABC_NatA_sodium_export 99.4 2.3E-13 5.1E-18 132.2 9.0 148 78-233 28-204 (218)
179 COG4175 ProV ABC-type proline/ 99.4 1.4E-13 3.1E-18 133.9 7.4 145 78-229 51-228 (386)
180 cd03292 ABC_FtsE_transporter F 99.4 2.9E-13 6.3E-18 131.1 9.6 142 78-227 24-197 (214)
181 PRK13650 cbiO cobalt transport 99.4 2.7E-13 5.8E-18 136.7 9.6 145 78-229 30-204 (279)
182 TIGR03258 PhnT 2-aminoethylpho 99.4 3.9E-13 8.5E-18 139.6 11.0 150 78-233 28-207 (362)
183 PRK11247 ssuB aliphatic sulfon 99.4 3.6E-13 7.8E-18 133.9 10.2 150 77-233 34-202 (257)
184 cd03219 ABC_Mj1267_LivG_branch 99.4 4E-13 8.7E-18 132.2 10.4 150 77-228 22-205 (236)
185 cd03262 ABC_HisP_GlnQ_permease 99.4 3.2E-13 6.9E-18 130.7 9.4 154 78-233 23-203 (213)
186 cd03294 ABC_Pro_Gly_Bertaine T 99.4 4.1E-13 8.9E-18 134.6 10.4 149 78-233 47-229 (269)
187 cd03268 ABC_BcrA_bacitracin_re 99.4 3.6E-13 7.9E-18 129.8 9.4 148 78-233 23-194 (208)
188 cd03246 ABCC_Protease_Secretio 99.4 3.7E-13 8E-18 125.8 9.2 60 167-228 97-158 (173)
189 TIGR03864 PQQ_ABC_ATP ABC tran 99.4 4.3E-13 9.3E-18 132.0 10.0 144 78-228 24-195 (236)
190 cd03235 ABC_Metallic_Cations A 99.4 3.2E-13 7E-18 130.7 9.0 153 77-233 21-200 (213)
191 TIGR01277 thiQ thiamine ABC tr 99.4 4.9E-13 1.1E-17 129.4 10.1 150 77-227 20-190 (213)
192 PRK13107 preprotein translocas 99.4 1.9E-12 4.1E-17 143.7 15.7 121 262-420 434-592 (908)
193 cd03229 ABC_Class3 This class 99.4 4.3E-13 9.3E-18 126.0 9.2 61 167-228 101-163 (178)
194 TIGR02142 modC_ABC molybdenum 99.4 4.8E-13 1E-17 139.2 10.4 149 78-233 20-200 (354)
195 TIGR03522 GldA_ABC_ATP gliding 99.4 3.3E-13 7.1E-18 137.5 9.0 155 78-235 25-202 (301)
196 PRK11831 putative ABC transpor 99.4 6.3E-13 1.4E-17 133.4 10.8 150 77-233 29-212 (269)
197 PRK11248 tauB taurine transpor 99.4 5.6E-13 1.2E-17 132.5 10.3 147 78-233 24-197 (255)
198 cd03218 ABC_YhbG The ABC trans 99.4 5.1E-13 1.1E-17 131.1 9.9 154 78-233 23-201 (232)
199 PRK10771 thiQ thiamine transpo 99.4 6.1E-13 1.3E-17 130.5 10.3 155 78-233 22-198 (232)
200 PRK15079 oligopeptide ABC tran 99.4 6E-13 1.3E-17 136.9 10.4 150 78-233 44-230 (331)
201 PRK13538 cytochrome c biogenes 99.4 4.2E-13 9.2E-18 128.9 8.7 143 77-227 23-190 (204)
202 PRK13540 cytochrome c biogenes 99.4 7.1E-13 1.5E-17 126.9 10.2 149 78-228 24-189 (200)
203 TIGR01184 ntrCD nitrate transp 99.4 5.8E-13 1.3E-17 130.4 9.7 153 78-233 8-183 (230)
204 PRK13647 cbiO cobalt transport 99.4 5.4E-13 1.2E-17 134.1 9.7 149 77-233 27-206 (274)
205 cd03295 ABC_OpuCA_Osmoprotecti 99.4 6.9E-13 1.5E-17 131.0 10.2 151 78-233 24-204 (242)
206 PRK13539 cytochrome c biogenes 99.4 6.1E-13 1.3E-17 128.1 9.5 143 77-227 24-188 (207)
207 PRK10908 cell division protein 99.4 6.2E-13 1.3E-17 129.6 9.6 148 78-233 25-205 (222)
208 PRK13637 cbiO cobalt transport 99.4 5.8E-13 1.2E-17 134.8 9.6 151 78-233 30-213 (287)
209 cd03224 ABC_TM1139_LivF_branch 99.4 4.2E-13 9.2E-18 130.7 8.3 155 77-233 22-200 (222)
210 TIGR03415 ABC_choXWV_ATP choli 99.4 8.1E-13 1.8E-17 137.6 10.6 149 78-233 47-233 (382)
211 cd03237 ABC_RNaseL_inhibitor_d 99.4 1.3E-12 2.8E-17 129.0 11.4 149 78-233 22-184 (246)
212 cd03215 ABC_Carb_Monos_II This 99.4 1.2E-12 2.5E-17 123.5 10.6 129 78-233 23-172 (182)
213 PRK13635 cbiO cobalt transport 99.4 7.6E-13 1.7E-17 133.3 9.9 144 78-228 30-203 (279)
214 COG1137 YhbG ABC-type (unclass 99.4 3.9E-13 8.4E-18 122.9 6.9 149 77-227 26-200 (243)
215 COG0444 DppD ABC-type dipeptid 99.4 6.3E-13 1.4E-17 131.3 8.8 153 78-234 28-223 (316)
216 PRK11264 putative amino-acid A 99.4 1E-12 2.2E-17 130.5 10.1 148 78-233 26-212 (250)
217 PRK11124 artP arginine transpo 99.4 8E-13 1.7E-17 130.6 9.3 148 78-233 25-209 (242)
218 cd03231 ABC_CcmA_heme_exporter 99.4 8.3E-13 1.8E-17 126.6 9.2 142 78-227 23-186 (201)
219 PRK13651 cobalt transporter AT 99.4 7.4E-13 1.6E-17 134.8 9.3 149 78-233 30-233 (305)
220 PRK13646 cbiO cobalt transport 99.4 9E-13 1.9E-17 133.4 9.6 150 78-233 30-214 (286)
221 PRK11308 dppF dipeptide transp 99.4 1.1E-12 2.5E-17 134.7 10.5 151 78-234 38-224 (327)
222 PRK10575 iron-hydroxamate tran 99.4 9.1E-13 2E-17 131.9 9.5 155 78-233 34-216 (265)
223 PRK11300 livG leucine/isoleuci 99.4 1E-12 2.2E-17 130.9 9.8 155 78-233 28-222 (255)
224 PRK13644 cbiO cobalt transport 99.4 1.1E-12 2.4E-17 131.9 10.1 143 78-228 25-198 (274)
225 TIGR01189 ccmA heme ABC export 99.4 1.1E-12 2.4E-17 125.5 9.6 141 78-226 23-187 (198)
226 PRK09493 glnQ glutamine ABC tr 99.4 1.1E-12 2.4E-17 129.4 9.8 149 78-228 24-198 (240)
227 PRK13632 cbiO cobalt transport 99.4 1.2E-12 2.5E-17 131.6 10.1 145 77-228 31-205 (271)
228 cd03257 ABC_NikE_OppD_transpor 99.4 8.6E-13 1.9E-17 129.1 8.8 151 77-228 27-208 (228)
229 TIGR03740 galliderm_ABC gallid 99.4 1.2E-12 2.5E-17 127.7 9.7 147 78-233 23-192 (223)
230 PRK10895 lipopolysaccharide AB 99.4 1.2E-12 2.7E-17 129.1 9.9 149 77-233 25-205 (241)
231 PRK11614 livF leucine/isoleuci 99.4 9.6E-13 2.1E-17 129.6 8.9 155 77-233 27-205 (237)
232 PRK13634 cbiO cobalt transport 99.4 1.4E-12 3E-17 132.3 10.1 150 78-233 30-214 (290)
233 TIGR03005 ectoine_ehuA ectoine 99.4 1.4E-12 3E-17 129.6 10.0 149 78-233 23-215 (252)
234 cd03232 ABC_PDR_domain2 The pl 99.4 1.6E-12 3.4E-17 123.7 9.9 127 77-227 29-169 (192)
235 PRK10619 histidine/lysine/argi 99.4 1.5E-12 3.1E-17 129.9 10.0 143 78-228 28-214 (257)
236 PRK09984 phosphonate/organopho 99.4 1.3E-12 2.8E-17 130.6 9.7 155 78-233 27-221 (262)
237 cd03297 ABC_ModC_molybdenum_tr 99.4 1.4E-12 3.1E-17 126.2 9.5 148 78-233 21-200 (214)
238 cd03234 ABCG_White The White s 99.4 1.8E-12 3.9E-17 126.6 10.3 154 78-233 30-212 (226)
239 cd03263 ABC_subfamily_A The AB 99.4 1.3E-12 2.8E-17 127.1 9.2 147 78-233 25-200 (220)
240 TIGR03411 urea_trans_UrtD urea 99.4 1.8E-12 3.8E-17 128.1 10.2 154 77-233 24-210 (242)
241 PRK10247 putative ABC transpor 99.4 1.8E-12 3.9E-17 126.5 10.1 144 78-228 30-200 (225)
242 PRK10253 iron-enterobactin tra 99.4 1.5E-12 3.3E-17 130.3 9.7 150 77-233 29-212 (265)
243 COG4181 Predicted ABC-type tra 99.4 2.7E-12 5.8E-17 114.5 10.0 149 77-232 32-213 (228)
244 PRK13633 cobalt transporter AT 99.4 1.7E-12 3.8E-17 130.9 10.1 144 78-228 33-207 (280)
245 PRK13642 cbiO cobalt transport 99.4 1.8E-12 4E-17 130.5 10.1 151 78-229 30-204 (277)
246 PRK13548 hmuV hemin importer A 99.4 2.1E-12 4.5E-17 128.8 10.4 150 77-233 24-209 (258)
247 PRK13652 cbiO cobalt transport 99.4 2E-12 4.3E-17 130.3 10.2 149 78-233 27-206 (277)
248 TIGR02982 heterocyst_DevA ABC 99.4 1.3E-12 2.7E-17 127.2 8.5 151 78-229 28-205 (220)
249 PRK13636 cbiO cobalt transport 99.4 1.7E-12 3.7E-17 131.1 9.6 150 77-233 28-210 (283)
250 cd03247 ABCC_cytochrome_bd The 99.4 1.3E-12 2.8E-17 122.7 8.2 62 164-228 96-159 (178)
251 PRK15439 autoinducer 2 ABC tra 99.4 1.9E-12 4.1E-17 141.7 10.7 148 78-233 34-208 (510)
252 PF00270 DEAD: DEAD/DEAH box h 99.4 6.4E-13 1.4E-17 123.3 6.0 153 68-227 1-163 (169)
253 PRK13641 cbiO cobalt transport 99.4 2E-12 4.3E-17 130.9 10.0 154 78-233 30-213 (287)
254 PRK11231 fecE iron-dicitrate t 99.4 1.6E-12 3.5E-17 129.4 9.2 154 78-233 25-206 (255)
255 PRK13643 cbiO cobalt transport 99.4 1.3E-12 2.8E-17 132.3 8.5 154 78-233 29-212 (288)
256 TIGR02769 nickel_nikE nickel i 99.4 2.6E-12 5.6E-17 128.7 10.6 150 78-233 34-219 (265)
257 PRK14250 phosphate ABC transpo 99.4 1.9E-12 4.1E-17 127.8 9.5 149 78-233 26-200 (241)
258 TIGR03410 urea_trans_UrtE urea 99.4 1.9E-12 4E-17 126.9 9.3 149 78-227 23-193 (230)
259 cd03213 ABCG_EPDR ABCG transpo 99.4 2.7E-12 5.8E-17 122.3 10.1 127 77-227 31-172 (194)
260 PRK13631 cbiO cobalt transport 99.4 2.3E-12 5E-17 132.0 10.3 155 78-234 49-245 (320)
261 cd03233 ABC_PDR_domain1 The pl 99.4 3.2E-12 7E-17 122.5 10.7 131 78-225 30-178 (202)
262 PRK10762 D-ribose transporter 99.4 2E-12 4.3E-17 141.3 10.5 149 77-233 26-209 (501)
263 cd03300 ABC_PotA_N PotA is an 99.4 2.9E-12 6.2E-17 125.7 10.4 149 78-233 23-199 (232)
264 PRK13640 cbiO cobalt transport 99.4 2.3E-12 5.1E-17 130.0 10.0 149 77-232 29-210 (282)
265 cd03264 ABC_drug_resistance_li 99.4 1.9E-12 4.1E-17 125.1 8.9 146 78-233 23-197 (211)
266 PRK13541 cytochrome c biogenes 99.4 2.4E-12 5.2E-17 122.8 9.4 147 78-227 23-184 (195)
267 PRK13639 cbiO cobalt transport 99.4 2.5E-12 5.5E-17 129.3 10.1 148 78-233 25-205 (275)
268 cd03238 ABC_UvrA The excision 99.4 2.7E-12 5.8E-17 119.6 9.4 125 78-228 18-151 (176)
269 cd03299 ABC_ModC_like Archeal 99.4 2.9E-12 6.2E-17 126.0 10.1 149 78-233 22-198 (235)
270 PRK15093 antimicrobial peptide 99.4 2.7E-12 5.9E-17 132.3 10.4 153 77-233 29-227 (330)
271 PRK13648 cbiO cobalt transport 99.4 3.3E-12 7.2E-17 128.2 10.6 144 78-228 32-205 (269)
272 PRK09700 D-allose transporter 99.4 2.5E-12 5.5E-17 140.9 10.6 154 78-233 28-213 (510)
273 TIGR03873 F420-0_ABC_ATP propo 99.3 2.6E-12 5.5E-17 128.0 9.7 154 78-233 24-205 (256)
274 TIGR03771 anch_rpt_ABC anchore 99.3 3.7E-12 8E-17 124.1 10.5 146 78-233 3-181 (223)
275 PRK11022 dppD dipeptide transp 99.3 2.9E-12 6.3E-17 131.7 10.3 154 77-234 29-223 (326)
276 PRK03695 vitamin B12-transport 99.3 2.8E-12 6.1E-17 127.0 9.8 148 78-233 19-201 (248)
277 COG0410 LivF ABC-type branched 99.3 2.3E-12 5E-17 121.2 8.5 156 77-235 25-207 (237)
278 cd03267 ABC_NatA_like Similar 99.3 3.2E-12 7E-17 125.7 9.8 156 77-233 43-222 (236)
279 cd03228 ABCC_MRP_Like The MRP 99.3 2.5E-12 5.5E-17 119.9 8.6 59 167-228 97-157 (171)
280 COG1123 ATPase components of v 99.3 3.1E-12 6.6E-17 135.6 10.1 153 77-234 31-224 (539)
281 TIGR00968 3a0106s01 sulfate AB 99.3 3.8E-12 8.3E-17 125.2 10.1 155 78-233 23-199 (237)
282 PRK09473 oppD oligopeptide tra 99.3 3.5E-12 7.6E-17 131.2 10.3 154 77-234 38-231 (330)
283 cd03217 ABC_FeS_Assembly ABC-t 99.3 4.2E-12 9.2E-17 121.5 10.0 126 77-228 22-166 (200)
284 cd03216 ABC_Carb_Monos_I This 99.3 4.3E-12 9.3E-17 117.3 9.5 125 78-233 23-150 (163)
285 PRK13638 cbiO cobalt transport 99.3 3.7E-12 8E-17 127.9 9.8 148 78-233 24-204 (271)
286 cd03223 ABCD_peroxisomal_ALDP 99.3 8E-12 1.7E-16 115.9 11.2 123 77-228 23-150 (166)
287 COG3845 ABC-type uncharacteriz 99.3 3.7E-12 8.1E-17 131.5 9.3 149 77-233 26-208 (501)
288 PRK13645 cbiO cobalt transport 99.3 4.2E-12 9E-17 128.8 9.7 155 78-233 34-219 (289)
289 PRK15112 antimicrobial peptide 99.3 4.6E-12 9.9E-17 127.0 9.7 144 78-227 36-211 (267)
290 TIGR01978 sufC FeS assembly AT 99.3 4.9E-12 1.1E-16 125.0 9.7 150 77-228 22-206 (243)
291 PRK15056 manganese/iron transp 99.3 3.4E-12 7.3E-17 128.3 8.5 149 77-233 29-210 (272)
292 PRK13649 cbiO cobalt transport 99.3 3.8E-12 8.3E-17 128.5 8.9 149 78-233 30-213 (280)
293 PRK13549 xylose transporter AT 99.3 5.2E-12 1.1E-16 138.2 10.4 154 78-233 28-211 (506)
294 PRK09544 znuC high-affinity zi 99.3 5.9E-12 1.3E-16 124.8 9.7 149 78-233 27-189 (251)
295 COG1101 PhnK ABC-type uncharac 99.3 4E-12 8.7E-17 117.6 7.8 162 64-228 11-211 (263)
296 PRK10982 galactose/methyl gala 99.3 5.5E-12 1.2E-16 137.5 10.4 154 78-233 21-202 (491)
297 TIGR02323 CP_lyasePhnK phospho 99.3 7.2E-12 1.6E-16 124.6 10.1 146 77-228 25-211 (253)
298 COG4148 ModC ABC-type molybdat 99.3 1.5E-12 3.3E-17 124.7 4.9 149 80-235 23-199 (352)
299 cd03260 ABC_PstB_phosphate_tra 99.3 5.5E-12 1.2E-16 123.3 8.9 152 78-233 23-208 (227)
300 PRK10261 glutathione transport 99.3 5.4E-12 1.2E-16 141.1 9.9 156 77-233 346-532 (623)
301 cd03245 ABCC_bacteriocin_expor 99.3 2.6E-12 5.7E-17 125.0 6.4 147 78-228 27-201 (220)
302 TIGR01187 potA spermidine/putr 99.3 5.6E-12 1.2E-16 129.7 9.0 141 86-233 1-169 (325)
303 PRK11288 araG L-arabinose tran 99.3 7.8E-12 1.7E-16 136.7 10.5 149 77-233 26-208 (501)
304 COG4152 ABC-type uncharacteriz 99.3 5.2E-12 1.1E-16 119.0 7.6 155 78-235 25-200 (300)
305 smart00490 HELICc helicase sup 99.3 3.1E-12 6.7E-17 103.2 5.4 71 312-407 11-81 (82)
306 PRK11701 phnK phosphonate C-P 99.3 1.1E-11 2.4E-16 123.6 10.5 151 78-234 29-221 (258)
307 cd03254 ABCC_Glucan_exporter_l 99.3 6.6E-12 1.4E-16 122.9 8.4 148 77-228 25-200 (229)
308 TIGR02324 CP_lyasePhnL phospho 99.3 1.2E-11 2.6E-16 120.6 10.2 155 77-233 30-217 (224)
309 COG1129 MglA ABC-type sugar tr 99.3 1E-11 2.3E-16 130.7 10.2 151 77-235 30-215 (500)
310 cd03252 ABCC_Hemolysin The ABC 99.3 6.8E-12 1.5E-16 123.5 8.4 147 78-228 25-199 (237)
311 PRK10261 glutathione transport 99.3 1E-11 2.3E-16 138.8 10.7 153 77-233 38-237 (623)
312 cd03369 ABCC_NFT1 Domain 2 of 99.3 6.9E-12 1.5E-16 120.8 8.1 140 78-228 31-186 (207)
313 PRK10419 nikE nickel transport 99.3 1.4E-11 3E-16 123.5 10.3 151 77-233 34-220 (268)
314 cd03248 ABCC_TAP TAP, the Tran 99.3 8.1E-12 1.8E-16 122.0 8.4 148 77-228 36-211 (226)
315 COG1123 ATPase components of v 99.3 9.1E-12 2E-16 132.0 9.2 152 77-234 313-499 (539)
316 COG2274 SunT ABC-type bacterio 99.3 8.3E-12 1.8E-16 139.0 9.2 152 77-232 495-674 (709)
317 PRK10762 D-ribose transporter 99.3 1.1E-11 2.4E-16 135.5 10.1 155 77-233 274-463 (501)
318 PRK11288 araG L-arabinose tran 99.3 9.3E-12 2E-16 136.1 9.5 155 77-233 275-464 (501)
319 cd03290 ABCC_SUR1_N The SUR do 99.3 1.4E-11 3E-16 119.7 9.4 148 78-228 24-204 (218)
320 COG4598 HisP ABC-type histidin 99.3 4.9E-12 1.1E-16 113.6 5.6 142 78-227 29-213 (256)
321 TIGR03269 met_CoM_red_A2 methy 99.3 1.2E-11 2.7E-16 135.7 10.1 155 77-233 306-496 (520)
322 cd03222 ABC_RNaseL_inhibitor T 99.3 2.2E-11 4.9E-16 113.5 10.2 117 77-233 21-140 (177)
323 PRK14247 phosphate ABC transpo 99.3 1.8E-11 3.9E-16 121.5 10.2 147 77-228 25-207 (250)
324 PRK14242 phosphate transporter 99.3 2.2E-11 4.8E-16 121.1 10.9 150 78-233 29-216 (253)
325 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.3 6.3E-12 1.4E-16 123.8 6.8 147 78-228 26-200 (238)
326 cd03251 ABCC_MsbA MsbA is an e 99.3 7.9E-12 1.7E-16 122.8 7.4 147 78-228 25-199 (234)
327 TIGR00972 3a0107s01c2 phosphat 99.3 2.2E-11 4.7E-16 120.7 10.6 150 78-233 24-211 (247)
328 PRK09700 D-allose transporter 99.3 9.8E-12 2.1E-16 136.2 8.8 154 78-233 286-477 (510)
329 cd03214 ABC_Iron-Siderophores_ 99.3 2.2E-11 4.9E-16 114.5 10.0 139 78-233 22-166 (180)
330 PRK14259 phosphate ABC transpo 99.3 2.4E-11 5.3E-16 121.8 10.8 151 77-233 35-221 (269)
331 TIGR02868 CydC thiol reductant 99.3 8.3E-12 1.8E-16 137.6 8.2 145 77-225 357-528 (529)
332 PRK10418 nikD nickel transport 99.3 2.4E-11 5.2E-16 120.9 10.7 152 77-233 25-209 (254)
333 PRK14273 phosphate ABC transpo 99.3 1.3E-11 2.7E-16 122.9 8.6 151 77-233 29-217 (254)
334 CHL00131 ycf16 sulfate ABC tra 99.3 2.2E-11 4.9E-16 121.0 10.4 144 78-228 30-213 (252)
335 TIGR02770 nickel_nikD nickel i 99.3 1.5E-11 3.3E-16 120.4 9.0 149 78-227 9-187 (230)
336 COG4608 AppF ABC-type oligopep 99.3 7.7E-12 1.7E-16 121.1 6.7 136 77-228 35-172 (268)
337 PRK15134 microcin C ABC transp 99.3 1.4E-11 3.1E-16 135.5 9.6 156 77-233 308-494 (529)
338 COG4988 CydD ABC-type transpor 99.3 1.4E-11 3.1E-16 130.1 9.0 148 77-228 343-517 (559)
339 KOG4150 Predicted ATP-dependen 99.3 5E-11 1.1E-15 123.2 12.7 314 57-412 277-633 (1034)
340 PRK13547 hmuV hemin importer A 99.2 2.7E-11 5.9E-16 121.4 10.5 143 78-227 24-216 (272)
341 PRK14269 phosphate ABC transpo 99.2 1.5E-11 3.2E-16 121.8 8.4 150 78-233 25-209 (246)
342 TIGR02633 xylG D-xylose ABC tr 99.2 2.3E-11 4.9E-16 133.1 10.6 155 77-233 23-209 (500)
343 PRK13409 putative ATPase RIL; 99.2 2.6E-11 5.5E-16 134.0 11.1 147 78-233 362-522 (590)
344 COG4161 ArtP ABC-type arginine 99.2 1.7E-11 3.6E-16 108.2 7.6 150 78-229 25-204 (242)
345 cd03253 ABCC_ATM1_transporter 99.2 1.5E-11 3.3E-16 120.9 8.3 147 78-228 24-198 (236)
346 COG1119 ModF ABC-type molybden 99.2 3.6E-11 7.8E-16 114.1 10.2 68 160-227 165-234 (257)
347 PRK10938 putative molybdenum t 99.2 1.3E-11 2.7E-16 134.8 8.3 149 77-233 25-203 (490)
348 TIGR03269 met_CoM_red_A2 methy 99.2 3.5E-11 7.6E-16 132.2 11.8 150 77-233 22-237 (520)
349 PRK14265 phosphate ABC transpo 99.2 3E-11 6.5E-16 121.5 10.3 151 77-233 42-228 (274)
350 PRK14258 phosphate ABC transpo 99.2 2.5E-11 5.5E-16 121.2 9.7 152 78-233 30-219 (261)
351 cd03289 ABCC_CFTR2 The CFTR su 99.2 1E-11 2.2E-16 124.4 6.7 148 77-228 26-199 (275)
352 PRK14268 phosphate ABC transpo 99.2 3.9E-11 8.4E-16 119.7 10.8 150 78-233 35-221 (258)
353 PRK14245 phosphate ABC transpo 99.2 3.3E-11 7.1E-16 119.6 9.9 150 78-233 26-213 (250)
354 PRK14241 phosphate transporter 99.2 3.1E-11 6.7E-16 120.4 9.7 151 78-233 27-215 (258)
355 PRK11174 cysteine/glutathione 99.2 1.5E-11 3.3E-16 137.2 8.3 147 78-228 373-546 (588)
356 PRK14262 phosphate ABC transpo 99.2 3.9E-11 8.4E-16 119.1 10.2 151 77-233 25-213 (250)
357 TIGR01257 rim_protein retinal- 99.2 2.2E-11 4.9E-16 147.7 10.0 155 78-234 1962-2139(2272)
358 PRK14267 phosphate ABC transpo 99.2 3.8E-11 8.3E-16 119.4 10.1 152 77-233 26-216 (253)
359 PRK15439 autoinducer 2 ABC tra 99.2 2.6E-11 5.7E-16 132.7 9.4 155 77-233 285-471 (510)
360 TIGR02633 xylG D-xylose ABC tr 99.2 2.7E-11 5.8E-16 132.5 9.3 155 77-233 282-471 (500)
361 cd03250 ABCC_MRP_domain1 Domai 99.2 2.9E-11 6.2E-16 116.2 8.4 149 77-228 27-190 (204)
362 PRK13549 xylose transporter AT 99.2 3.3E-11 7.1E-16 132.0 9.9 155 77-233 284-473 (506)
363 PRK14240 phosphate transporter 99.2 4.5E-11 9.7E-16 118.7 9.8 150 78-233 26-213 (250)
364 PRK14239 phosphate transporter 99.2 4.3E-11 9.4E-16 118.9 9.5 150 78-233 28-215 (252)
365 cd03244 ABCC_MRP_domain2 Domai 99.2 1.4E-11 3E-16 120.0 5.8 147 78-228 27-200 (221)
366 PRK10744 pstB phosphate transp 99.2 5E-11 1.1E-15 119.0 9.9 151 77-233 35-223 (260)
367 PRK14251 phosphate ABC transpo 99.2 4.7E-11 1E-15 118.6 9.7 150 78-233 27-214 (251)
368 PRK14235 phosphate transporter 99.2 3.4E-11 7.5E-16 120.6 8.7 145 78-228 42-224 (267)
369 PRK13546 teichoic acids export 99.2 8.5E-11 1.8E-15 117.3 11.5 155 77-233 46-211 (264)
370 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.2 7.1E-11 1.5E-15 115.2 10.6 149 77-233 44-210 (224)
371 PRK14260 phosphate ABC transpo 99.2 5.5E-11 1.2E-15 118.6 9.8 150 78-233 30-217 (259)
372 TIGR01257 rim_protein retinal- 99.2 4.1E-11 8.8E-16 145.5 10.2 147 78-233 953-1128(2272)
373 PRK15134 microcin C ABC transp 99.2 3.7E-11 8E-16 132.3 9.1 151 78-233 32-225 (529)
374 PRK14248 phosphate ABC transpo 99.2 5.8E-11 1.3E-15 119.1 9.6 150 78-233 44-231 (268)
375 PRK14249 phosphate ABC transpo 99.2 5E-11 1.1E-15 118.4 9.0 150 78-233 27-214 (251)
376 PRK14263 phosphate ABC transpo 99.2 6.7E-11 1.5E-15 118.0 9.8 150 78-233 31-216 (261)
377 TIGR03797 NHPM_micro_ABC2 NHPM 99.2 3.7E-11 8E-16 136.5 8.9 145 78-228 476-647 (686)
378 PRK10790 putative multidrug tr 99.2 3.1E-11 6.8E-16 134.8 8.1 149 77-229 363-538 (592)
379 PRK14275 phosphate ABC transpo 99.2 5.5E-11 1.2E-15 120.3 9.2 151 77-233 61-249 (286)
380 PRK14254 phosphate ABC transpo 99.2 6.4E-11 1.4E-15 119.7 9.5 151 77-233 61-247 (285)
381 TIGR02857 CydD thiol reductant 99.2 3.6E-11 7.7E-16 132.6 8.3 148 77-228 344-519 (529)
382 PRK14243 phosphate transporter 99.2 8.2E-11 1.8E-15 117.7 10.2 151 77-233 32-218 (264)
383 PRK14237 phosphate transporter 99.2 5.8E-11 1.3E-15 119.0 8.9 151 77-233 42-230 (267)
384 PRK14272 phosphate ABC transpo 99.2 6.6E-11 1.4E-15 117.6 9.3 153 78-233 27-215 (252)
385 PRK13657 cyclic beta-1,2-gluca 99.2 3.6E-11 7.7E-16 134.2 8.1 150 77-230 357-534 (588)
386 KOG0058 Peptide exporter, ABC 99.2 4.1E-11 8.9E-16 129.2 8.1 148 77-230 490-667 (716)
387 COG4172 ABC-type uncharacteriz 99.2 5.2E-11 1.1E-15 119.6 8.3 152 77-234 309-496 (534)
388 TIGR03375 type_I_sec_LssB type 99.2 3.3E-11 7.1E-16 137.0 7.8 149 77-229 487-663 (694)
389 PRK14255 phosphate ABC transpo 99.2 1.3E-10 2.7E-15 115.6 10.9 145 78-228 28-209 (252)
390 PRK11176 lipid transporter ATP 99.2 3.7E-11 8.1E-16 134.0 7.9 150 77-230 365-543 (582)
391 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.2 9.3E-11 2E-15 106.0 9.0 104 78-227 23-128 (144)
392 PRK14253 phosphate ABC transpo 99.2 8.4E-11 1.8E-15 116.6 9.5 151 77-233 25-212 (249)
393 PRK09580 sufC cysteine desulfu 99.2 1.1E-10 2.4E-15 115.7 10.3 61 166-228 145-207 (248)
394 TIGR01842 type_I_sec_PrtD type 99.2 7.8E-11 1.7E-15 130.2 10.0 149 77-228 340-516 (544)
395 PRK11819 putative ABC transpor 99.2 8.9E-11 1.9E-15 129.8 10.4 152 77-233 29-228 (556)
396 PRK14257 phosphate ABC transpo 99.2 9.6E-11 2.1E-15 120.5 9.8 150 78-233 105-292 (329)
397 TIGR03796 NHPM_micro_ABC1 NHPM 99.2 3.7E-11 8.1E-16 137.0 7.5 150 77-232 501-678 (710)
398 PRK11160 cysteine/glutathione 99.2 5.3E-11 1.1E-15 132.2 8.5 148 77-228 362-536 (574)
399 PLN03211 ABC transporter G-25; 99.2 8.6E-11 1.9E-15 131.5 10.1 147 78-228 91-268 (659)
400 COG1132 MdlB ABC-type multidru 99.2 4.8E-11 1E-15 132.6 7.9 151 78-232 352-530 (567)
401 PRK14256 phosphate ABC transpo 99.2 1.8E-10 3.9E-15 114.5 11.1 151 78-233 27-215 (252)
402 PRK13409 putative ATPase RIL; 99.2 5.2E-11 1.1E-15 131.6 8.0 71 160-233 206-279 (590)
403 PRK14246 phosphate ABC transpo 99.2 8.9E-11 1.9E-15 116.9 8.7 151 78-233 33-220 (257)
404 COG4172 ABC-type uncharacteriz 99.2 1.1E-10 2.4E-15 117.4 9.2 155 77-235 32-228 (534)
405 PRK10982 galactose/methyl gala 99.1 7.4E-11 1.6E-15 128.7 8.4 72 160-233 385-459 (491)
406 COG4136 ABC-type uncharacteriz 99.1 5E-11 1.1E-15 104.1 5.5 144 77-227 24-196 (213)
407 PRK13545 tagH teichoic acids e 99.1 1.8E-10 4E-15 122.7 11.0 146 78-233 47-211 (549)
408 PRK14238 phosphate transporter 99.1 1.3E-10 2.7E-15 116.8 9.3 153 77-233 46-234 (271)
409 PRK10535 macrolide transporter 99.1 1.5E-10 3.3E-15 130.0 11.0 147 78-232 31-210 (648)
410 PRK14274 phosphate ABC transpo 99.1 1.3E-10 2.9E-15 115.9 9.4 150 78-233 35-222 (259)
411 TIGR00958 3a01208 Conjugate Tr 99.1 5.4E-11 1.2E-15 135.3 7.4 147 77-229 503-677 (711)
412 PRK14244 phosphate ABC transpo 99.1 1.3E-10 2.9E-15 115.3 9.4 144 78-227 28-209 (251)
413 PRK14270 phosphate ABC transpo 99.1 2.2E-10 4.7E-15 113.8 10.9 150 78-233 27-214 (251)
414 COG4618 ArpD ABC-type protease 99.1 1.1E-10 2.3E-15 120.7 8.8 149 77-230 358-536 (580)
415 PRK14271 phosphate ABC transpo 99.1 1E-10 2.2E-15 117.7 8.5 150 78-233 44-230 (276)
416 COG4604 CeuD ABC-type enteroch 99.1 2.4E-11 5.2E-16 111.0 3.6 74 161-235 130-206 (252)
417 TIGR02203 MsbA_lipidA lipid A 99.1 5.8E-11 1.3E-15 132.2 7.4 148 77-228 354-530 (571)
418 cd03236 ABC_RNaseL_inhibitor_d 99.1 1.5E-10 3.2E-15 114.9 9.4 66 161-228 134-201 (255)
419 KOG0055 Multidrug/pheromone ex 99.1 7.8E-11 1.7E-15 134.2 8.2 142 77-228 375-550 (1228)
420 PRK15064 ABC transporter ATP-b 99.1 1.7E-10 3.7E-15 127.0 10.8 147 77-233 23-220 (530)
421 TIGR01193 bacteriocin_ABC ABC- 99.1 5.5E-11 1.2E-15 135.5 7.1 149 77-230 496-673 (708)
422 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 1.5E-10 3.3E-15 128.0 10.3 146 77-227 27-219 (552)
423 cd00267 ABC_ATPase ABC (ATP-bi 99.1 1.6E-10 3.5E-15 106.1 8.8 119 78-228 22-142 (157)
424 PRK15177 Vi polysaccharide exp 99.1 1.9E-10 4E-15 111.3 9.6 153 78-233 10-171 (213)
425 PF00005 ABC_tran: ABC transpo 99.1 7.4E-11 1.6E-15 105.7 6.1 114 78-193 8-135 (137)
426 cd03288 ABCC_SUR2 The SUR doma 99.1 8.8E-11 1.9E-15 117.0 7.0 148 78-229 44-218 (257)
427 PRK14236 phosphate transporter 99.1 2.5E-10 5.4E-15 114.7 10.3 152 78-233 48-235 (272)
428 PRK14261 phosphate ABC transpo 99.1 1.5E-10 3.3E-15 115.0 8.6 150 78-233 29-216 (253)
429 PRK14266 phosphate ABC transpo 99.1 2E-10 4.4E-15 113.9 9.4 144 78-227 26-206 (250)
430 TIGR00955 3a01204 The Eye Pigm 99.1 1.5E-10 3.2E-15 129.5 9.2 143 78-228 48-228 (617)
431 TIGR01194 cyc_pep_trnsptr cycl 99.1 1.3E-10 2.8E-15 128.6 8.6 149 77-228 364-533 (555)
432 cd03291 ABCC_CFTR1 The CFTR su 99.1 3.3E-10 7.2E-15 114.0 10.7 145 78-228 60-221 (282)
433 PRK14264 phosphate ABC transpo 99.1 2.9E-10 6.2E-15 116.1 10.4 150 78-233 68-267 (305)
434 COG0396 sufC Cysteine desulfur 99.1 2E-10 4.2E-15 107.9 8.3 149 78-236 27-211 (251)
435 PRK14252 phosphate ABC transpo 99.1 3.6E-10 7.7E-15 113.2 10.5 150 78-233 39-228 (265)
436 PRK10789 putative multidrug tr 99.1 1.3E-10 2.7E-15 129.1 7.8 148 77-228 337-512 (569)
437 PRK15064 ABC transporter ATP-b 99.1 2.6E-10 5.7E-15 125.5 10.2 145 77-233 341-503 (530)
438 cd03278 ABC_SMC_barmotin Barmo 99.1 4.2E-10 9.2E-15 107.2 10.3 134 78-229 20-179 (197)
439 COG1110 Reverse gyrase [DNA re 99.1 3.3E-09 7.2E-14 117.3 18.3 279 61-377 77-420 (1187)
440 COG4586 ABC-type uncharacteriz 99.1 1.9E-10 4.2E-15 110.2 7.6 74 160-234 150-226 (325)
441 TIGR02204 MsbA_rel ABC transpo 99.1 1.3E-10 2.9E-15 129.4 7.7 148 77-228 362-537 (576)
442 PRK10938 putative molybdenum t 99.1 2.7E-10 5.9E-15 124.3 9.8 68 160-228 395-464 (490)
443 TIGR01192 chvA glucan exporter 99.1 2.9E-10 6.3E-15 126.5 10.2 148 77-228 357-532 (585)
444 TIGR00954 3a01203 Peroxysomal 99.1 3.5E-10 7.6E-15 127.2 10.7 149 77-232 474-645 (659)
445 PLN03232 ABC transporter C fam 99.1 1.4E-10 3.1E-15 141.0 8.2 148 77-228 1258-1432(1495)
446 PLN03130 ABC transporter C fam 99.1 1.8E-10 3.8E-15 140.5 8.7 148 77-228 1261-1435(1622)
447 TIGR00957 MRP_assoc_pro multi 99.1 1.7E-10 3.8E-15 140.5 8.5 148 77-228 1308-1482(1522)
448 cd03270 ABC_UvrA_I The excisio 99.1 7.5E-10 1.6E-14 108.0 11.1 67 160-228 131-201 (226)
449 COG4619 ABC-type uncharacteriz 99.1 5.6E-11 1.2E-15 105.8 2.6 145 77-228 25-196 (223)
450 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 5.1E-10 1.1E-14 123.8 10.6 141 77-227 344-501 (552)
451 PRK10522 multidrug transporter 99.1 3.3E-10 7.2E-15 125.2 9.0 147 77-228 345-512 (547)
452 PRK11819 putative ABC transpor 99.1 5.1E-10 1.1E-14 123.8 10.5 151 78-233 347-510 (556)
453 PTZ00243 ABC transporter; Prov 99.1 2.5E-10 5.5E-15 138.9 8.7 148 77-228 1332-1507(1560)
454 TIGR01846 type_I_sec_HlyB type 99.1 2.3E-10 5E-15 130.1 7.8 147 78-228 480-654 (694)
455 COG0488 Uup ATPase components 99.1 7.2E-10 1.6E-14 119.7 11.0 145 77-226 25-210 (530)
456 PTZ00265 multidrug resistance 99.0 2.8E-10 6E-15 137.5 8.4 66 163-229 576-643 (1466)
457 TIGR01271 CFTR_protein cystic 99.0 3.9E-10 8.4E-15 137.1 9.2 148 77-228 1241-1414(1490)
458 PLN03140 ABC transporter G fam 99.0 6.9E-10 1.5E-14 133.6 11.2 144 78-229 903-1082(1470)
459 PRK10636 putative ABC transpor 99.0 4.6E-10 9.9E-15 125.8 9.1 141 77-227 334-488 (638)
460 PRK11147 ABC transporter ATPas 99.0 5.2E-10 1.1E-14 125.6 9.4 146 77-227 341-498 (635)
461 KOG0055 Multidrug/pheromone ex 99.0 3.9E-10 8.5E-15 128.6 8.2 147 77-227 1012-1186(1228)
462 PTZ00265 multidrug resistance 99.0 3.9E-10 8.5E-15 136.2 7.9 114 115-230 1296-1423(1466)
463 TIGR00956 3a01205 Pleiotropic 99.0 8.9E-10 1.9E-14 132.9 10.3 143 78-229 786-965 (1394)
464 KOG0057 Mitochondrial Fe/S clu 99.0 5.7E-10 1.2E-14 116.6 7.3 150 77-230 374-550 (591)
465 PLN03142 Probable chromatin-re 99.0 1.6E-08 3.4E-13 116.5 19.4 115 278-423 486-603 (1033)
466 TIGR01407 dinG_rel DnaQ family 99.0 4E-08 8.7E-13 113.8 22.7 137 260-415 656-811 (850)
467 COG4167 SapF ABC-type antimicr 99.0 1.8E-09 4E-14 97.5 8.8 142 78-227 36-211 (267)
468 PRK11147 ABC transporter ATPas 99.0 2.1E-09 4.6E-14 120.7 11.0 62 161-227 151-214 (635)
469 KOG0953 Mitochondrial RNA heli 99.0 1.2E-08 2.5E-13 106.2 15.3 121 275-419 353-477 (700)
470 COG4559 ABC-type hemin transpo 99.0 1.5E-09 3.3E-14 100.5 8.0 155 78-234 24-210 (259)
471 PRK10636 putative ABC transpor 99.0 2.5E-09 5.4E-14 119.9 11.2 62 161-227 144-207 (638)
472 COG4674 Uncharacterized ABC-ty 99.0 1.2E-09 2.6E-14 99.8 6.7 149 77-234 27-215 (249)
473 COG1198 PriA Primosomal protei 98.9 1.7E-08 3.7E-13 111.8 16.4 90 310-414 504-598 (730)
474 COG1134 TagH ABC-type polysacc 98.9 3.3E-09 7.2E-14 101.0 9.1 152 78-233 50-215 (249)
475 COG4178 ABC-type uncharacteriz 98.9 2.2E-09 4.8E-14 115.5 8.9 152 77-234 415-582 (604)
476 PLN03073 ABC transporter F fam 98.9 3.6E-09 7.8E-14 119.3 10.8 139 77-227 531-685 (718)
477 COG4133 CcmA ABC-type transpor 98.9 1.9E-09 4.1E-14 98.2 6.6 142 77-226 24-190 (209)
478 cd03240 ABC_Rad50 The catalyti 98.9 2.2E-09 4.7E-14 103.0 7.2 67 161-228 110-185 (204)
479 TIGR02562 cas3_yersinia CRISPR 98.9 1.2E-07 2.7E-12 107.0 22.1 103 283-409 760-881 (1110)
480 KOG0061 Transporter, ABC super 98.9 3.5E-09 7.5E-14 117.5 9.7 147 78-232 53-236 (613)
481 smart00487 DEXDc DEAD-like hel 98.9 1.7E-08 3.7E-13 95.3 13.0 159 62-227 4-171 (201)
482 COG4987 CydC ABC-type transpor 98.9 1.1E-09 2.4E-14 114.3 5.0 148 77-228 360-535 (573)
483 PLN03140 ABC transporter G fam 98.9 2.7E-09 5.9E-14 128.5 9.0 147 78-226 188-397 (1470)
484 COG0488 Uup ATPase components 98.9 4.2E-09 9.2E-14 113.8 9.5 143 77-226 344-496 (530)
485 COG4107 PhnK ABC-type phosphon 98.9 1.1E-08 2.3E-13 91.9 10.0 73 161-234 146-221 (258)
486 TIGR00956 3a01205 Pleiotropic 98.9 4.3E-09 9.2E-14 127.1 9.2 147 78-226 84-270 (1394)
487 PLN03232 ABC transporter C fam 98.8 7.4E-09 1.6E-13 126.3 10.2 147 78-228 640-802 (1495)
488 PLN03130 ABC transporter C fam 98.8 8.3E-09 1.8E-13 126.1 10.5 147 78-228 640-802 (1622)
489 PLN03073 ABC transporter F fam 98.8 8.9E-09 1.9E-13 116.2 9.5 62 161-227 339-402 (718)
490 TIGR00957 MRP_assoc_pro multi 98.8 1.3E-08 2.8E-13 124.3 10.9 150 78-228 661-824 (1522)
491 cd03271 ABC_UvrA_II The excisi 98.8 2.6E-08 5.7E-13 98.6 10.9 71 161-233 164-239 (261)
492 cd03274 ABC_SMC4_euk Eukaryoti 98.8 4.2E-09 9.1E-14 101.6 4.0 68 161-231 122-195 (212)
493 cd03279 ABC_sbcCD SbcCD and ot 98.8 1.5E-08 3.2E-13 98.0 7.9 65 161-227 118-194 (213)
494 KOG0059 Lipid exporter ABCA1 a 98.8 1.1E-08 2.4E-13 118.4 7.6 157 77-235 587-768 (885)
495 KOG0062 ATPase component of AB 98.8 8.7E-09 1.9E-13 106.9 5.6 139 78-226 103-255 (582)
496 TIGR01271 CFTR_protein cystic 98.8 2.7E-08 5.8E-13 121.2 10.8 148 78-229 449-611 (1490)
497 PF07652 Flavi_DEAD: Flaviviru 98.7 2.7E-08 5.9E-13 87.6 7.5 134 79-227 2-137 (148)
498 COG4615 PvdE ABC-type sideroph 98.7 1.2E-08 2.5E-13 102.7 5.3 62 165-227 447-510 (546)
499 KOG0060 Long-chain acyl-CoA tr 98.7 2.4E-08 5.3E-13 105.0 7.4 154 77-234 457-635 (659)
500 cd03276 ABC_SMC6_euk Eukaryoti 98.7 9.1E-08 2E-12 91.3 10.5 68 160-227 103-177 (198)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8e-117 Score=918.33 Aligned_cols=502 Identities=57% Similarity=0.973 Sum_probs=482.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHH
Q 008221 54 RYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVS 133 (573)
Q Consensus 54 ~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~ 133 (573)
....+.+.|..||++..+.+++..+.++++++|+|+|||||||++||++.+..... ...|.||||||++++++|
T Consensus 39 ~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~------~g~I~~TQPRRVAavslA 112 (674)
T KOG0922|consen 39 TNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS------SGKIACTQPRRVAAVSLA 112 (674)
T ss_pred cccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccccc------CCcEEeecCchHHHHHHH
Confidence 34556677899999999999999999999999999999999999999999877622 233999999999999999
Q ss_pred HHHHHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHh
Q 008221 134 RRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN 213 (573)
Q Consensus 134 ~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~ 213 (573)
++|+++++..+|+.|||.+||++..+.+++|.|+|+|+++|.++.+++|+++++|||||||||++.+|.++++||.+.++
T Consensus 113 ~RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~ 192 (674)
T KOG0922|consen 113 KRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKK 192 (674)
T ss_pred HHHHHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecccccHHHHHchhCCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHH
Q 008221 214 RPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIE 293 (573)
Q Consensus 214 ~~~~~iil~SATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~ 293 (573)
++++++|+||||+++++|++||+++|++.|+|+.|||+++|.+.+..||+++++.++.+||..+++|+|||||+|++||+
T Consensus 193 R~~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe 272 (674)
T KOG0922|consen 193 RPDLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIE 272 (674)
T ss_pred CCCceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcc
Q 008221 294 DACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFA 373 (573)
Q Consensus 294 ~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~ 373 (573)
.+++.|.+.........+. .++|+||.|+.++|.++|++.+.|. ||||+||||||+|||||||.||||+|++
T Consensus 273 ~~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~-------RKvIlsTNIAETSlTI~GI~YVVDsG~v 344 (674)
T KOG0922|consen 273 AACELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPGK-------RKVILSTNIAETSLTIDGIRYVVDSGFV 344 (674)
T ss_pred HHHHHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCCc-------ceEEEEcceeeeeEEecceEEEEcCCce
Confidence 9999999887666555545 7899999999999999999999998 9999999999999999999999999999
Q ss_pred cceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhhhhcCCCChhhhhccCchhHHHHHHHcCCCcc
Q 008221 374 KQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDL 453 (573)
Q Consensus 374 k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~~~~~~~pei~r~~l~~~~L~~k~~~~~~~ 453 (573)
|++.|||..++.+|.++|+|++++.||+|||||++||+|||||++++| +.|++.++|||+|++|...+|++|++|++|+
T Consensus 345 K~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~-~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~ 423 (674)
T KOG0922|consen 345 KQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY-DKMPLQTVPEIQRVNLSSAVLQLKALGINDP 423 (674)
T ss_pred EEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH-hhcccCCCCceeeechHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999999999999999999 7999999999999999999999999999999
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHcCCccCCCCcCh-hhhhhhcCCCChhhhhhhhhCCCCCCHHHHHHHHHhhcCCCccc
Q 008221 454 VHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTE-MGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFV 532 (573)
Q Consensus 454 ~~~~~~~pP~~~~~~~a~~~L~~lgald~~~~lT~-lG~~~~~lp~~p~~~~~l~~~~~~~c~~~~~~i~a~l~~~~~f~ 532 (573)
..|+|+|||+++++..|++.|..+||||++|.||. +|+.|+.+|++|.++|+|+.+..++|.+|+++|||+|++++.|.
T Consensus 424 l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~ 503 (674)
T KOG0922|consen 424 LRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFS 503 (674)
T ss_pred ccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceec
Confidence 99999999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred CChhhHHH-HHHHHhhhCCCCChHHHHHHHHHHHHHcCc
Q 008221 533 RPREAQKA-ADEAKARFGHIDGDHLTLLNVYHAYKQNSK 570 (573)
Q Consensus 533 ~~~~~~~~-~~~~~~~~~~~~sD~~~~l~~~~~~~~~~~ 570 (573)
+|.+.+.+ ++..+.+|.+.+|||+|+||+|+.|.+++.
T Consensus 504 ~p~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~ 542 (674)
T KOG0922|consen 504 RPKDKKAEDADRKRAKFANPEGDHLTLLNVYESWKENGT 542 (674)
T ss_pred CccchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhcCC
Confidence 99887766 889999999999999999999999998754
No 2
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-116 Score=876.77 Aligned_cols=515 Identities=80% Similarity=1.249 Sum_probs=498.1
Q ss_pred cCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEe
Q 008221 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (573)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t 122 (573)
+++|+++++|++|.+++++|..||+|.+++++++.+.+++.++++|+|||||||++|++.++... .. ...+.||
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~-~~-----~~~v~CT 97 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYEL-SH-----LTGVACT 97 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHH-hh-----ccceeec
Confidence 89999999999999999999999999999999999999999999999999999999999987654 22 2568999
Q ss_pred cCcccccccHHHHHHHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHH
Q 008221 123 QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDV 202 (573)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ 202 (573)
||++.++++++.+++.++...+|..|||.++|+++...++.+.|||+|+++|.+++++++..+++|||||||||++.+|.
T Consensus 98 Qprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDi 177 (699)
T KOG0925|consen 98 QPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDI 177 (699)
T ss_pred CchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccHHHHHchhCCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCE
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDI 282 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~i 282 (573)
++++++++...+|++++|+||||+++.+|..||+++|++.|+| .|||+++|.+.+++||++++++++++||..+.+|+|
T Consensus 178 LmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDi 256 (699)
T KOG0925|consen 178 LMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDI 256 (699)
T ss_pred HHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCE
Confidence 9999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred EEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccC
Q 008221 283 LVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID 362 (573)
Q Consensus 283 LVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~ 362 (573)
||||+|.+||+.+|+.+..+..+++...+.++++||| +.+|..+|++.+.. ..+..+|||+|+|||||+|+||+
T Consensus 257 lvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~--~~~~~~RkvVvstniaetsltid 330 (699)
T KOG0925|consen 257 LVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEK--RNGAYGRKVVVSTNIAETSLTID 330 (699)
T ss_pred EEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcc--cCCCccceEEEEecchheeeeec
Confidence 9999999999999999998888888888999999999 77889999998833 45677899999999999999999
Q ss_pred CeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhhhhcCCCChhhhhccCchhHH
Q 008221 363 GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTV 442 (573)
Q Consensus 363 ~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~~~~~~~pei~r~~l~~~~ 442 (573)
+|.||||.|+.|+++|||+.++++|.+.|||++++.||+|||||++||.||||||++.|+..|.+.+.|||+|++|.+++
T Consensus 331 giv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~V 410 (699)
T KOG0925|consen 331 GIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTV 410 (699)
T ss_pred cEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCccccccCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhhhcCCCChhhhhhhhhCCCCCCHHHHHHHH
Q 008221 443 LTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSIS 522 (573)
Q Consensus 443 L~~k~~~~~~~~~~~~~~pP~~~~~~~a~~~L~~lgald~~~~lT~lG~~~~~lp~~p~~~~~l~~~~~~~c~~~~~~i~ 522 (573)
|++|++|++++.+|+|+|||.|+++.+|++.|..++|+|+||+||++|..|++||+||+++|||+.|+.|+|.+|+++|+
T Consensus 411 L~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsis 490 (699)
T KOG0925|consen 411 LQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSIS 490 (699)
T ss_pred HHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcccCCh-hhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHcCc
Q 008221 523 AMLSVPNCFVRPR-EAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNSK 570 (573)
Q Consensus 523 a~l~~~~~f~~~~-~~~~~~~~~~~~~~~~~sD~~~~l~~~~~~~~~~~ 570 (573)
|||+++++|.+|. +.++.++.+|..|+|.+|||+|++|+|.+|++++.
T Consensus 491 AMLsvPncFvRp~~~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq~~~ 539 (699)
T KOG0925|consen 491 AMLSVPNCFVRPTSSASKAADEAKETFAHIDGDHLTLLNVYHAFKQNNE 539 (699)
T ss_pred hcccCCccccCCChhHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCC
Confidence 9999999999998 78889999999999999999999999999998753
No 3
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-116 Score=901.46 Aligned_cols=503 Identities=60% Similarity=0.984 Sum_probs=486.7
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHH
Q 008221 55 YYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSR 134 (573)
Q Consensus 55 ~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~ 134 (573)
...+-+.|+.||+++.+++++.+|.++++++|.|+|||||||++||++.++.... .+..|.||||+++++++|+.
T Consensus 254 ~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk-----~gk~IgcTQPRRVAAmSVAa 328 (902)
T KOG0923|consen 254 RESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTK-----GGKKIGCTQPRRVAAMSVAA 328 (902)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccccc-----CCceEeecCcchHHHHHHHH
Confidence 3445566899999999999999999999999999999999999999999887632 24459999999999999999
Q ss_pred HHHHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhC
Q 008221 135 RVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR 214 (573)
Q Consensus 135 ~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~ 214 (573)
++++++++.+|..|||.++|+++.+..+.+.|||+|+++|.++..+.|..++++|+||||||++.+|.++++++++.+-+
T Consensus 329 RVA~EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R 408 (902)
T KOG0923|consen 329 RVAEEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR 408 (902)
T ss_pred HHHHHhCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecccccHHHHHchhCCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHH
Q 008221 215 PDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIED 294 (573)
Q Consensus 215 ~~~~iil~SATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~ 294 (573)
|+++++++|||+++++|+.||.++|++.+||+.|||+++|...|+.||+++++.++++||.+.+.|+||||++|+++|+.
T Consensus 409 pdLKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt 488 (902)
T KOG0923|consen 409 PDLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIET 488 (902)
T ss_pred CcceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCccc
Q 008221 295 ACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAK 374 (573)
Q Consensus 295 ~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k 374 (573)
+.+.|.+....++.....+.++|+|++||.+.|.++|++.|+|. ||||+||||||+|||||||.||||.|++|
T Consensus 489 ~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~ga-------RKVVLATNIAETSlTIdgI~yViDpGf~K 561 (902)
T KOG0923|consen 489 VKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGA-------RKVVLATNIAETSLTIDGIKYVIDPGFVK 561 (902)
T ss_pred HHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCc-------eeEEEeecchhhceeecCeEEEecCcccc
Confidence 99999998888888888999999999999999999999999999 99999999999999999999999999999
Q ss_pred ceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhhhhcCCCChhhhhccCchhHHHHHHHcCCCccc
Q 008221 375 QKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLV 454 (573)
Q Consensus 375 ~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~~~~~~~pei~r~~l~~~~L~~k~~~~~~~~ 454 (573)
+..|||++|+++|.+.|||++++.||+|||||++||+||||||...|.+.++..++|||+|++|.+++|.||++|+.++.
T Consensus 562 ~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~ 641 (902)
T KOG0923|consen 562 QNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLI 641 (902)
T ss_pred ccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhhhcCCCChhhhhhhhhCCCCCCHHHHHHHHHhhcC-CCcccC
Q 008221 455 HFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSV-PNCFVR 533 (573)
Q Consensus 455 ~~~~~~pP~~~~~~~a~~~L~~lgald~~~~lT~lG~~~~~lp~~p~~~~~l~~~~~~~c~~~~~~i~a~l~~-~~~f~~ 533 (573)
+|+|+|||+.+++..|++.|+.+|||+..|+||-+|+.|++||+||+++|||+.+..+.|.+|+++||||||+ .++|.+
T Consensus 642 ~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyr 721 (902)
T KOG0923|consen 642 HFDFLDPPPTETLLKALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYR 721 (902)
T ss_pred ccccCCCCChHHHHHHHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 589999
Q ss_pred ChhhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHcC
Q 008221 534 PREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNS 569 (573)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~sD~~~~l~~~~~~~~~~ 569 (573)
|.+...-++++++.|..+.|||+++|++|+.|.+++
T Consensus 722 pk~~~v~ad~a~~~f~~~~gDhi~~L~vyn~w~es~ 757 (902)
T KOG0923|consen 722 PKDKQVHADNARKNFEEPVGDHIVLLNVYNQWKESK 757 (902)
T ss_pred chhhhhhhhhhhhccCCCCcchhhhhHHHHHHhhcc
Confidence 999998999999999999999999999999998764
No 4
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-113 Score=880.65 Aligned_cols=500 Identities=55% Similarity=0.930 Sum_probs=481.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHH
Q 008221 58 ILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVA 137 (573)
Q Consensus 58 ~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (573)
+.+.+.+||++..+++++..|.++++++|+|+|||||||++++++++..... ...|.||||++.++++||++++
T Consensus 348 i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~------~GmIGcTQPRRvAAiSVAkrVa 421 (1042)
T KOG0924|consen 348 IREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD------NGMIGCTQPRRVAAISVAKRVA 421 (1042)
T ss_pred HHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc------CCeeeecCchHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999876522 3579999999999999999999
Q ss_pred HhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCc
Q 008221 138 EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDL 217 (573)
Q Consensus 138 ~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~ 217 (573)
++++..+|..|||.++|++....++.|.|+|.|.++|..+.+..|.+|++||+||||||++++|.++++++.+++++.++
T Consensus 422 ~EM~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdl 501 (1042)
T KOG0924|consen 422 EEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDL 501 (1042)
T ss_pred HHhCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred EEEEecccccHHHHHchhCCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHH
Q 008221 218 KLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACR 297 (573)
Q Consensus 218 ~iil~SATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~ 297 (573)
++|++||||++++|++||++||.+.++|++|||++.|...+..||+++++...+.||...++|+||||++|+++|+-.+.
T Consensus 502 KliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~ 581 (1042)
T KOG0924|consen 502 KLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCD 581 (1042)
T ss_pred eEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC-CCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccce
Q 008221 298 KITKEITNMGD-QVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQK 376 (573)
Q Consensus 298 ~L~~~~~~~~~-~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~ 376 (573)
.+...+..+.. ...++.|+|+||.|+++.|.++|++.+.|. |||||||||||+|||||||.||||+|++|.+
T Consensus 582 ~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~v-------RK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 582 IIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGV-------RKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred HHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCc-------eeEEEeccchhhceeecceEEEEecCceeee
Confidence 98877654422 123799999999999999999999999998 9999999999999999999999999999999
Q ss_pred eecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhhhhcCCCChhhhhccCchhHHHHHHHcCCCccccc
Q 008221 377 VYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF 456 (573)
Q Consensus 377 ~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~~~~~~~pei~r~~l~~~~L~~k~~~~~~~~~~ 456 (573)
+|||..|+..|.+.|||++++.||+|||||++||.||||||+..|.+.|-+.++|||+|++|.+++|.+|++|++++..|
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~F 734 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKF 734 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhhhcCCCChhhhhhhhhCCCCCCHHHHHHHHHhhcCCCcccCChh
Q 008221 457 DFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPRE 536 (573)
Q Consensus 457 ~~~~pP~~~~~~~a~~~L~~lgald~~~~lT~lG~~~~~lp~~p~~~~~l~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~ 536 (573)
+|+|||+.+.+.+|+-.|..+||||+.|.||++|+.|++||+||.++|||+.++.+||.+|+++|++|||++..|.+|.+
T Consensus 735 dFmD~Pped~~~~sly~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpke 814 (1042)
T KOG0924|consen 735 DFMDPPPEDNLLNSLYQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKE 814 (1042)
T ss_pred CcCCCCHHHHHHHHHHHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhCCCCChHHHHHHHHHHHHHcCc
Q 008221 537 AQKAADEAKARFGHIDGDHLTLLNVYHAYKQNSK 570 (573)
Q Consensus 537 ~~~~~~~~~~~~~~~~sD~~~~l~~~~~~~~~~~ 570 (573)
..+++..++.+|..++|||||+||+|++|.+++.
T Consensus 815 r~eead~ar~Kf~~~~sDhLTlLNVf~qw~~~~~ 848 (1042)
T KOG0924|consen 815 REEEADAAREKFQVPESDHLTLLNVFNQWRKNKY 848 (1042)
T ss_pred chhhhhhHHhhhcCCCCchhhHHHHHHHHHhcCC
Confidence 9999999999999999999999999999998864
No 5
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.8e-102 Score=852.35 Aligned_cols=507 Identities=50% Similarity=0.792 Sum_probs=470.7
Q ss_pred CccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEec
Q 008221 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (573)
..+.....++.+.+.+..+..||++..+.+++.++.++++++|.|+|||||||++|+++++... .....|++||
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~------~~~g~I~~tQ 101 (845)
T COG1643 28 SGMDARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL------GIAGKIGCTQ 101 (845)
T ss_pred hhhhhhhcccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc------ccCCeEEecC
Confidence 3345555666777778889999999999999999999999999999999999999999998765 1245799999
Q ss_pred CcccccccHHHHHHHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHH
Q 008221 124 PRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVL 203 (573)
Q Consensus 124 p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~l 203 (573)
||++++.+++++++++++..+|+.|||.+++++..+.++++.++|+|+++|.++.+.+|++++++|+||+|||++++|++
T Consensus 102 PRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDil 181 (845)
T COG1643 102 PRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDIL 181 (845)
T ss_pred chHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC-CcEEEEecccccHHHHHchhCCCCeeeecCcccCCcccccCCCchhH-HHHHHHHHHHHhhcCCCCC
Q 008221 204 FGLLKEVLKNRP-DLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDY-LEAAIRTVVQIHMCEPSGD 281 (573)
Q Consensus 204 l~~l~~l~~~~~-~~~iil~SATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~-~~~~~~~l~~i~~~~~~g~ 281 (573)
++++++++..++ ++++|+||||++.+.|+.||+++|++.++|+.|||+++|.+....++ ++.++...+.++..++.|+
T Consensus 182 Lgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~Gd 261 (845)
T COG1643 182 LGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGS 261 (845)
T ss_pred HHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCC
Confidence 999999877665 79999999999999999999999999999999999999988888888 8888999999999999999
Q ss_pred EEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccccccc
Q 008221 282 ILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTI 361 (573)
Q Consensus 282 iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI 361 (573)
|||||||.+||+.+++.|.+. .+ .+.+.++||||.|+.++|.++|++.+.|+ ||||+|||||||||||
T Consensus 262 ILvFLpG~~EI~~~~~~L~~~--~l---~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~-------RKVVlATNIAETSLTI 329 (845)
T COG1643 262 ILVFLPGQREIERTAEWLEKA--EL---GDDLEILPLYGALSAEEQVRVFEPAPGGK-------RKVVLATNIAETSLTI 329 (845)
T ss_pred EEEECCcHHHHHHHHHHHHhc--cc---cCCcEEeeccccCCHHHHHhhcCCCCCCc-------ceEEEEccccccceee
Confidence 999999999999999999871 11 14799999999999999999999999988 8999999999999999
Q ss_pred CCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhhhhcCCCChhhhhccCchhH
Q 008221 362 DGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANT 441 (573)
Q Consensus 362 ~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~~~~~~~pei~r~~l~~~ 441 (573)
|||+||||+|+.|+++||+.++++.|.+.|||++++.||+|||||++||+|||||++++|. .|+.++.|||+|+||+++
T Consensus 330 ~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~-~~~~~t~PEIlrtdLs~~ 408 (845)
T COG1643 330 PGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL-AFPEFTLPEILRTDLSGL 408 (845)
T ss_pred CCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH-hcccCCChhhhhcchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999996 999999999999999999
Q ss_pred HHHHHHcCCC-ccccccCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhhhcCCCChhhhhhhhhCCCCCCHHHHHH
Q 008221 442 VLTLKKLGID-DLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILS 520 (573)
Q Consensus 442 ~L~~k~~~~~-~~~~~~~~~pP~~~~~~~a~~~L~~lgald~~~~lT~lG~~~~~lp~~p~~~~~l~~~~~~~c~~~~~~ 520 (573)
+|++++||++ ++..|+|+|||+..++..|++.|..+||||.+|.||++|+.|+.||+||++|+||+.+..++|++++++
T Consensus 409 vL~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~ 488 (845)
T COG1643 409 VLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAAT 488 (845)
T ss_pred HHHHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHH
Confidence 9999999995 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCC---cccCChhhHH---HHHHHH-hhhCC---CCChHHHHHHHHHHHHHcC
Q 008221 521 ISAMLSVPN---CFVRPREAQK---AADEAK-ARFGH---IDGDHLTLLNVYHAYKQNS 569 (573)
Q Consensus 521 i~a~l~~~~---~f~~~~~~~~---~~~~~~-~~~~~---~~sD~~~~l~~~~~~~~~~ 569 (573)
|||+|++++ .|..+.+..+ +...++ ..+.+ +.+||++++++|..|...+
T Consensus 489 Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~ 547 (845)
T COG1643 489 IASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARK 547 (845)
T ss_pred HHHhhccCCCcchhccccchhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhh
Confidence 999999988 6777766544 333333 33444 6799999999999998765
No 6
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=2.3e-98 Score=820.14 Aligned_cols=512 Identities=40% Similarity=0.651 Sum_probs=470.1
Q ss_pred ccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecC
Q 008221 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQP 124 (573)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p 124 (573)
.+.....++.+.+++..|..||+++.+++||++|.++++++|.|+|||||||++||++++...... ..+.|+||||
T Consensus 152 ~~~~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~----~~~~IicTQP 227 (924)
T KOG0920|consen 152 RQSEPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG----AACNIICTQP 227 (924)
T ss_pred hhchhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC----CCCeEEecCC
Confidence 455667788999999999999999999999999999999999999999999999999998653222 4567999999
Q ss_pred cccccccHHHHHHHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHH
Q 008221 125 RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLF 204 (573)
Q Consensus 125 ~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll 204 (573)
|++++++++++++.+++...|..|||+++.+......+.+.++|.|.++|.++.++.+.++.++|+||+|||+++.|+++
T Consensus 228 RRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflL 307 (924)
T KOG0920|consen 228 RRISAISVAERVAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLL 307 (924)
T ss_pred chHHHHHHHHHHHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHH
Confidence 99999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEecccccHHHHHchhCCCCeeeecCcccCCcccccCCC-----------------chh------
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEP-----------------ERD------ 261 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~-----------------~~~------ 261 (573)
-+++.++..+|++++|+||||++++.|++||+++|+++++|++|||..+|+... +.+
T Consensus 308 i~lk~lL~~~p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (924)
T KOG0920|consen 308 ILLKDLLPRNPDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLAR 387 (924)
T ss_pred HHHHHHhhhCCCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCcccccc
Confidence 999999999999999999999999999999999999999999999999987421 111
Q ss_pred --------HHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCC
Q 008221 262 --------YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEP 333 (573)
Q Consensus 262 --------~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~ 333 (573)
..+.....+.+|+..+..|.|||||||+++|..+++.|..... .....++.+++|||.|+..+|+.+|..
T Consensus 388 ~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~--f~~~~~~~ilplHs~~~s~eQ~~VF~~ 465 (924)
T KOG0920|consen 388 LKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLP--FADSLKFAILPLHSSIPSEEQQAVFKR 465 (924)
T ss_pred chhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccc--cccccceEEEeccccCChHHHHHhcCC
Confidence 1223345566777777899999999999999999999975421 111246999999999999999999999
Q ss_pred CCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEE
Q 008221 334 APPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCF 413 (573)
Q Consensus 334 ~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~ 413 (573)
.+.|. ||||+||||||+|||||||.||||+|+.|++.|||..++.+|...|+|++++.||+|||||+++|.||
T Consensus 466 pp~g~-------RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy 538 (924)
T KOG0920|consen 466 PPKGT-------RKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICY 538 (924)
T ss_pred CCCCc-------chhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeE
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhhhhcCCCChhhhhccCchhHHHHHHHcCCCccccc--cCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhh
Q 008221 414 RLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF--DFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGE 491 (573)
Q Consensus 414 ~l~t~~~~~~~~~~~~~pei~r~~l~~~~L~~k~~~~~~~~~~--~~~~pP~~~~~~~a~~~L~~lgald~~~~lT~lG~ 491 (573)
+||+...|+..+.++++|||+|.+|.++||++|.++...+..| ..++||+..++..|+..|..+||+|.+++||++|+
T Consensus 539 ~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~ 618 (924)
T KOG0920|consen 539 HLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGL 618 (924)
T ss_pred EeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHH
Confidence 9999999976666699999999999999999999988877655 57899999999999999999999999999999999
Q ss_pred hhhcCCCChhhhhhhhhCCCCCCHHHHHHHHHhhcCCCcccCChhhHHHHHHHHhhhCCC-CChHHHHHHHHHHHHHcC
Q 008221 492 KMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHI-DGDHLTLLNVYHAYKQNS 569 (573)
Q Consensus 492 ~~~~lp~~p~~~~~l~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~~~-~sD~~~~l~~~~~~~~~~ 569 (573)
+++.||+||++|||+++|..|+|++|+++|||+|+.++||..|.+..+.+++++..|... .|||++++++|++|++..
T Consensus 619 ~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~ 697 (924)
T KOG0920|consen 619 HLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREIL 697 (924)
T ss_pred HHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998744 599999999999998764
No 7
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=6.5e-96 Score=831.25 Aligned_cols=486 Identities=42% Similarity=0.725 Sum_probs=447.5
Q ss_pred HHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHh
Q 008221 60 EKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 60 ~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
..+..||++.++++|+++|.++++++|+|+|||||||++|+++++... . ....|+||||+++++++++++++++
T Consensus 68 ~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~-g-----~~g~I~~TQPRRlAArsLA~RVA~E 141 (1294)
T PRK11131 68 TYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGR-G-----VKGLIGHTQPRRLAARTVANRIAEE 141 (1294)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCC-C-----CCCceeeCCCcHHHHHHHHHHHHHH
Confidence 345679999999999999999999999999999999999999886432 1 1246899999999999999999999
Q ss_pred hhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEE
Q 008221 140 MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKL 219 (573)
Q Consensus 140 ~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~i 219 (573)
++..+|..|||.++++.....++.|.++|+|++++.+..+.+++++++||+||||||++++|+++..+++++..+|++|+
T Consensus 142 l~~~lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKv 221 (1294)
T PRK11131 142 LETELGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKV 221 (1294)
T ss_pred HhhhhcceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceE
Confidence 99999999999999998877789999999999999999888999999999999999999999999999999888789999
Q ss_pred EEecccccHHHHHchhCCCCeeeecCcccCCcccccCCCc------hhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHH
Q 008221 220 VVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPE------RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIE 293 (573)
Q Consensus 220 il~SATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~------~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~ 293 (573)
|+||||++.+.|++||.++|++.++|+.|||+++|.+... .+++..++..+..++ .+++|+|||||||+.+|+
T Consensus 222 ILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe 300 (1294)
T PRK11131 222 IITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIR 300 (1294)
T ss_pred EEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHH
Confidence 9999999999999999999999999999999999987643 345555555555554 356799999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcc
Q 008221 294 DACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFA 373 (573)
Q Consensus 294 ~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~ 373 (573)
.+++.|.+. ..+.+.+++|||+|++++|.++|++. |. +||||||||||||||||+|+||||+|++
T Consensus 301 ~lae~L~~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~~--g~-------rkIIVATNIAEtSITIpgI~yVID~Gl~ 365 (1294)
T PRK11131 301 DTADALNKL------NLRHTEILPLYARLSNSEQNRVFQSH--SG-------RRIVLATNVAETSLTVPGIKYVIDPGTA 365 (1294)
T ss_pred HHHHHHHhc------CCCcceEeecccCCCHHHHHHHhccc--CC-------eeEEEeccHHhhccccCcceEEEECCCc
Confidence 999999864 12356799999999999999999863 44 8999999999999999999999999999
Q ss_pred cceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhhhhcCCCChhhhhccCchhHHHHHHHcCCCcc
Q 008221 374 KQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDL 453 (573)
Q Consensus 374 k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~~~~~~~pei~r~~l~~~~L~~k~~~~~~~ 453 (573)
|+++||+.++++.|...|+|+++|.||+|||||+++|.||+||++++| ..+++++.|||+|++|.+++|++|++|++++
T Consensus 366 k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~-~~~~~~~~PEIlR~~L~~viL~lk~lgl~di 444 (1294)
T PRK11131 366 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDF-LSRPEFTDPEILRTNLASVILQMTALGLGDI 444 (1294)
T ss_pred cccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHH-HhhhcccCCccccCCHHHHHHHHHHcCCCCc
Confidence 999999999999999999999999999999999999999999999999 5799999999999999999999999999999
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHcCCccCC-----CCcChhhhhhhcCCCChhhhhhhhhCCCCCCHHHHHHHHHhhcCC
Q 008221 454 VHFDFMDPPAPETLMRALEVLNYLGALDDD-----GNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVP 528 (573)
Q Consensus 454 ~~~~~~~pP~~~~~~~a~~~L~~lgald~~-----~~lT~lG~~~~~lp~~p~~~~~l~~~~~~~c~~~~~~i~a~l~~~ 528 (573)
..|+|++||+..++.+|++.|.++||||.+ ++||++|+.|++||+||++||||+.|..|+|++|+++|||+|+++
T Consensus 445 ~~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~ 524 (1294)
T PRK11131 445 AAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQ 524 (1294)
T ss_pred ceeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCC
Confidence 999999999999999999999999999864 579999999999999999999999999999999999999999999
Q ss_pred CcccCChhhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHc
Q 008221 529 NCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQN 568 (573)
Q Consensus 529 ~~f~~~~~~~~~~~~~~~~~~~~~sD~~~~l~~~~~~~~~ 568 (573)
++|..|.+.+++++.+++.|.+.+|||+|++|+|+.|++.
T Consensus 525 dpf~~p~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~~ 564 (1294)
T PRK11131 525 DPRERPMDKQQASDEKHRRFADKESDFLAFVNLWNYLQEQ 564 (1294)
T ss_pred CcccCCchhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHH
Confidence 9999999988899999999999999999999999999753
No 8
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.1e-94 Score=820.75 Aligned_cols=485 Identities=44% Similarity=0.749 Sum_probs=449.3
Q ss_pred HhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 61 ~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
....||++.++++++.+|.++++++|.|+|||||||++|+++++... . ....|+++||+++++.++++++++++
T Consensus 62 ~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~-~-----~~~~I~~tQPRRlAA~svA~RvA~el 135 (1283)
T TIGR01967 62 YPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGR-G-----SHGLIGHTQPRRLAARTVAQRIAEEL 135 (1283)
T ss_pred CCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCC-C-----CCceEecCCccHHHHHHHHHHHHHHh
Confidence 44579999999999999999999999999999999999999987532 1 13468899999999999999999999
Q ss_pred hhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEE
Q 008221 141 DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLV 220 (573)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~ii 220 (573)
+..+|..|||.++++...+.++.|.++|+|++++.+..++++.++++||+||+|||++++|+++.+++++...++++++|
T Consensus 136 g~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlI 215 (1283)
T TIGR01967 136 GTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKII 215 (1283)
T ss_pred CCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEE
Confidence 99999999999999998888999999999999999999999999999999999999999999999999998888899999
Q ss_pred EecccccHHHHHchhCCCCeeeecCcccCCcccccCCCc------hhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHH
Q 008221 221 VMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPE------RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIED 294 (573)
Q Consensus 221 l~SATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~------~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~ 294 (573)
+||||++.+.|++||.++|++.++|+.|||+++|.+... .++.+..+..+..+.. +.+|+|||||||+.+|+.
T Consensus 216 lmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~ 294 (1283)
T TIGR01967 216 ITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRD 294 (1283)
T ss_pred EEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHH
Confidence 999999999999999999999999999999999986532 2455555666655544 467999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCccc
Q 008221 295 ACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAK 374 (573)
Q Consensus 295 ~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k 374 (573)
+++.|.+.. .+++.+++|||+|++++|.++|+++. . +||||||||||||||||+|+||||+|+.|
T Consensus 295 l~~~L~~~~------~~~~~VlpLhg~Ls~~eQ~~vf~~~~--~-------rkIVLATNIAEtSLTIpgV~yVIDsGl~r 359 (1283)
T TIGR01967 295 AAEILRKRN------LRHTEILPLYARLSNKEQQRVFQPHS--G-------RRIVLATNVAETSLTVPGIHYVIDTGTAR 359 (1283)
T ss_pred HHHHHHhcC------CCCcEEEeccCCCCHHHHHHHhCCCC--C-------ceEEEeccHHHhccccCCeeEEEeCCCcc
Confidence 999998641 23678999999999999999998752 2 79999999999999999999999999999
Q ss_pred ceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhhhhcCCCChhhhhccCchhHHHHHHHcCCCccc
Q 008221 375 QKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLV 454 (573)
Q Consensus 375 ~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~~~~~~~pei~r~~l~~~~L~~k~~~~~~~~ 454 (573)
.++||+.++++.|.+.|+|+++|.||+|||||+++|+||+||++++| ..+++++.|||+|++|.+++|+++++|+.++.
T Consensus 360 ~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~-~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~ 438 (1283)
T TIGR01967 360 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDF-NSRPEFTDPEILRTNLASVILQMLALRLGDIA 438 (1283)
T ss_pred ccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHH-HhhhhccCcccccccHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999999999999999999999999999 56899999999999999999999999999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHcCCccCCC---CcChhhhhhhcCCCChhhhhhhhhCCCCCCHHHHHHHHHhhcCCCcc
Q 008221 455 HFDFMDPPAPETLMRALEVLNYLGALDDDG---NLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCF 531 (573)
Q Consensus 455 ~~~~~~pP~~~~~~~a~~~L~~lgald~~~---~lT~lG~~~~~lp~~p~~~~~l~~~~~~~c~~~~~~i~a~l~~~~~f 531 (573)
.|+|++||+..++..|++.|..+||||++| +||++|+.|++||+||++||||+.|..++|++++++|||+|+++++|
T Consensus 439 ~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~ 518 (1283)
T TIGR01967 439 AFPFIEAPDPRAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPR 518 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcC
Confidence 999999999999999999999999999998 79999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHc
Q 008221 532 VRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQN 568 (573)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~sD~~~~l~~~~~~~~~ 568 (573)
..|.+.+++++.++..|.+.+|||++++|+|+.|.+.
T Consensus 519 ~~p~~~~~~a~~~~~~f~~~~sD~l~~L~~~~~~~~~ 555 (1283)
T TIGR01967 519 ERPMEKQQAADQAHARFKDPRSDFLSRVNLWRHIEEQ 555 (1283)
T ss_pred CCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 9999988999999999999999999999999999753
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-91 Score=725.02 Aligned_cols=505 Identities=43% Similarity=0.700 Sum_probs=456.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHH
Q 008221 55 YYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSR 134 (573)
Q Consensus 55 ~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~ 134 (573)
--++.+.|-.||+....++|+++|..+.+|+|+|+|||||||++||++++.... .........|..|||||.++++.++
T Consensus 245 ~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~-s~~~~~~gmIGITqPRRVAaiamAk 323 (1172)
T KOG0926|consen 245 PAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFA-SEQSSSPGMIGITQPRRVAAIAMAK 323 (1172)
T ss_pred cHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccC-CccCCCCCeeeecCchHHHHHHHHH
Confidence 345667788999999999999999999999999999999999999999987763 2222234578899999999999999
Q ss_pred HHHHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhC
Q 008221 135 RVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR 214 (573)
Q Consensus 135 ~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~ 214 (573)
+++.+++. .+..|||++|++.....++.|.+||+|.++|.+..+-+|..|++|||||||||++++|.++++|.++...|
T Consensus 324 RVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR 402 (1172)
T KOG0926|consen 324 RVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLR 402 (1172)
T ss_pred HHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHH
Confidence 99999998 89999999999999999999999999999999999999999999999999999999999999999886533
Q ss_pred ----------CCcEEEEecccccHHHHHc---hhC-CCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCC
Q 008221 215 ----------PDLKLVVMSATLEAEKFQG---YFY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSG 280 (573)
Q Consensus 215 ----------~~~~iil~SATl~~~~~~~---~~~-~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g 280 (573)
.-+++|+||||+.+..|.. .|. .+|++.|+.+.|||.++|......||+..+.+..+.||..-++|
T Consensus 403 ~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G 482 (1172)
T KOG0926|consen 403 QKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPG 482 (1172)
T ss_pred HHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCC
Confidence 2579999999999888873 343 57899999999999999999988999999999999999999999
Q ss_pred CEEEecCcHHHHHHHHHHHHHHHhh-------------------------------------------------------
Q 008221 281 DILVFLTGEEEIEDACRKITKEITN------------------------------------------------------- 305 (573)
Q Consensus 281 ~iLVFl~~~~~i~~~~~~L~~~~~~------------------------------------------------------- 305 (573)
.||||+.|++||+.++++|++....
T Consensus 483 ~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~ 562 (1172)
T KOG0926|consen 483 GILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFA 562 (1172)
T ss_pred cEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccch
Confidence 9999999999999999999876210
Q ss_pred --------c---------------------------CCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEE
Q 008221 306 --------M---------------------------GDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (573)
Q Consensus 306 --------~---------------------------~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvll 350 (573)
. ....+.+.|+||||-|+.+.|.++|++.+.|. |=+||
T Consensus 563 ~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~-------RLcVV 635 (1172)
T KOG0926|consen 563 SLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGE-------RLCVV 635 (1172)
T ss_pred hhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCc-------eEEEE
Confidence 0 00123678999999999999999999999998 99999
Q ss_pred eecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhhhhcCCCCh
Q 008221 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTY 430 (573)
Q Consensus 351 aT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~~~~~~~ 430 (573)
||||||+|||||+|+||||||.+|.+.||..+|++++.+.|||++++-||+|||||++||+|||||+..-|.+.++.+..
T Consensus 636 aTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~ 715 (1172)
T KOG0926|consen 636 ATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSL 715 (1172)
T ss_pred eccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred hhhhccCchhHHHHHHHcCCCccccccCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhhhcCCCChhhhhhhhhCC
Q 008221 431 PEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESP 510 (573)
Q Consensus 431 pei~r~~l~~~~L~~k~~~~~~~~~~~~~~pP~~~~~~~a~~~L~~lgald~~~~lT~lG~~~~~lp~~p~~~~~l~~~~ 510 (573)
|||++.|.++++|++|++++.++.+|||++||.+.+++.|...|..+||||.+|.||++|+.||.||+.|+++|||+.+.
T Consensus 716 PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~ 795 (1172)
T KOG0926|consen 716 PEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSD 795 (1172)
T ss_pred HHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhcCCCcccCCh--------------h------------------hHHHHHHHHhhhCCCCChHHHH
Q 008221 511 KYNCSNEILSISAMLSVPNCFVRPR--------------E------------------AQKAADEAKARFGHIDGDHLTL 558 (573)
Q Consensus 511 ~~~c~~~~~~i~a~l~~~~~f~~~~--------------~------------------~~~~~~~~~~~~~~~~sD~~~~ 558 (573)
+.+|+.-.+.++++||+..+|+.-. . .+....+++.+|+...||-+++
T Consensus 796 Q~~~lpy~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~l~L 875 (1172)
T KOG0926|consen 796 QHNLLPYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDALVL 875 (1172)
T ss_pred hhcchhHHHHHHHHHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCccHHHH
Confidence 9999999999999999987775310 0 0112234567788888999999
Q ss_pred HHHHHHHHHc
Q 008221 559 LNVYHAYKQN 568 (573)
Q Consensus 559 l~~~~~~~~~ 568 (573)
+.+.-++...
T Consensus 876 l~Av~a~ey~ 885 (1172)
T KOG0926|consen 876 LSAVSAAEYA 885 (1172)
T ss_pred HHHHHHHHhh
Confidence 9998876543
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.4e-86 Score=739.44 Aligned_cols=446 Identities=36% Similarity=0.565 Sum_probs=409.8
Q ss_pred CCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcc
Q 008221 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (573)
Q Consensus 65 lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (573)
||++.+..+++.+|.++++++++|+|||||||++++++++... ....+++++|+++++.+++++++++++..+
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~ 73 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-------IGGKIIMLEPRRLAARSAAQRLASQLGEAV 73 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCc
Confidence 7999999999999999999999999999999999999987542 124689999999999999999999999999
Q ss_pred cchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHH-hCCCcEEEEec
Q 008221 145 GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMS 223 (573)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~-~~~~~~iil~S 223 (573)
+..|||.++++.....++.|.++|+|++++++..+..+.++++||+||+|+|+++.|+.+.+++++.. .+++.++|+||
T Consensus 74 g~~VGy~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmS 153 (819)
T TIGR01970 74 GQTVGYRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMS 153 (819)
T ss_pred CcEEEEEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEe
Confidence 99999999998877778899999999999999888889999999999999999999998888887765 35689999999
Q ss_pred ccccHHHHHchhCCCCeeeecCcccCCcccccCCCchhHHHHHH-HHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHH
Q 008221 224 ATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAI-RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKE 302 (573)
Q Consensus 224 ATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~-~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~ 302 (573)
||++.+.+.+||.+++++.++|+.|||+++|......+++...+ ..+..+.. +..|+|||||||+.+|+.+++.|.+.
T Consensus 154 ATl~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~eI~~l~~~L~~~ 232 (819)
T TIGR01970 154 ATLDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALA-SETGSILVFLPGQAEIRRVQEQLAER 232 (819)
T ss_pred CCCCHHHHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHhh
Confidence 99999889999999999999999999999999876665544333 33333333 35789999999999999999999864
Q ss_pred HhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccC
Q 008221 303 ITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRV 382 (573)
Q Consensus 303 ~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~ 382 (573)
. ..++.+++|||+|++++|.++|++|++|. +||||||||||||||||||+||||+|+.|.++||+.+
T Consensus 233 ~------~~~~~v~pLHg~L~~~eq~~~~~~~~~G~-------rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 233 L------DSDVLICPLYGELSLAAQDRAIKPDPQGR-------RKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred c------CCCcEEEEecCCCCHHHHHHHHhhcccCC-------eEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 2 13789999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred CcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhhhhcCCCChhhhhccCchhHHHHHHHcCCCccccccCCCCC
Q 008221 383 RVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPP 462 (573)
Q Consensus 383 ~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~~~~~~~pei~r~~l~~~~L~~k~~~~~~~~~~~~~~pP 462 (573)
+++.|.+.|||+++|.||+|||||+++|.||+||+++++ ..|.+++.|||+|++|++++|+++.+|+.++..|+|++||
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~-~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P 378 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQH-QRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAP 378 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHH-HhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCc
Confidence 999999999999999999999999999999999999999 6799999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCccCCCCcChhhhhhhcCCCChhhhhhhhhCCCCCCHHHHHHHHHhhcCCCccc
Q 008221 463 APETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFV 532 (573)
Q Consensus 463 ~~~~~~~a~~~L~~lgald~~~~lT~lG~~~~~lp~~p~~~~~l~~~~~~~c~~~~~~i~a~l~~~~~f~ 532 (573)
+..++..|++.|..+||||++|+||++|+.|++||+||++||||+.|..++|.+++++|||+|+.++++.
T Consensus 379 ~~~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~ 448 (819)
T TIGR01970 379 PSVALAAARQLLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPR 448 (819)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998754
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.8e-83 Score=720.21 Aligned_cols=445 Identities=37% Similarity=0.585 Sum_probs=405.3
Q ss_pred cCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 63 KSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 63 ~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
..||++.+..++++++.+++++++.|+|||||||++++++++... . ...+++++|+++++.+++++++.+++.
T Consensus 2 ~~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-~------~~~ilvlqPrR~aA~qia~rva~~l~~ 74 (812)
T PRK11664 2 SSLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-I------NGKIIMLEPRRLAARNVAQRLAEQLGE 74 (812)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-c------CCeEEEECChHHHHHHHHHHHHHHhCc
Confidence 459999999999999999999999999999999999999987543 1 135889999999999999999999999
Q ss_pred cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHh-CCCcEEEE
Q 008221 143 TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN-RPDLKLVV 221 (573)
Q Consensus 143 ~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~-~~~~~iil 221 (573)
.++..|||.++++.....++.|.++|+|++.+++..+..+.++++||+||+|+|+++.|.++.+++++.+. +++.++|+
T Consensus 75 ~~g~~VGy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 75 KPGETVGYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred ccCceEEEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEE
Confidence 99999999999888777778999999999999998888899999999999999999999999988887653 46899999
Q ss_pred ecccccHHHHHchhCCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHH
Q 008221 222 MSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITK 301 (573)
Q Consensus 222 ~SATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~ 301 (573)
||||++.+.+++||.+++++.++|+.|||+++|...+..+++...+...+.....+..|++||||||+.+|+.+++.|.+
T Consensus 155 mSATl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~ 234 (812)
T PRK11664 155 MSATLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLAS 234 (812)
T ss_pred EecCCCHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHH
Confidence 99999998899999999999999999999999998776666654333222222234579999999999999999999986
Q ss_pred HHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeeccc
Q 008221 302 EITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPR 381 (573)
Q Consensus 302 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~ 381 (573)
.. ..++.+.+|||+|++++|.+++++|++|+ +||||||||||||||||+|+||||+|+.|..+|||.
T Consensus 235 ~~------~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~-------rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~ 301 (812)
T PRK11664 235 RV------ASDVLLCPLYGALSLAEQQKAILPAPAGR-------RKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPK 301 (812)
T ss_pred hc------cCCceEEEeeCCCCHHHHHHHhccccCCC-------eEEEEecchHHhcccccCceEEEECCCccccccccc
Confidence 32 13688999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhhhhcCCCChhhhhccCchhHHHHHHHcCCCccccccCCCC
Q 008221 382 VRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDP 461 (573)
Q Consensus 382 ~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~~~~~~~pei~r~~l~~~~L~~k~~~~~~~~~~~~~~p 461 (573)
++++.|.+.|||+++|.||+|||||+++|.||+||++++| ..+.+++.|||+|++|++++|.+++||+.++..|+|+||
T Consensus 302 ~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~-~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~ 380 (812)
T PRK11664 302 TGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQA-ERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQ 380 (812)
T ss_pred CCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHH-hhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCC
Confidence 9999999999999999999999999999999999999999 579999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCccCCCCcChhhhhhhcCCCChhhhhhhhhCCCCCCHH--HHHHHHHhhcCC
Q 008221 462 PAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSN--EILSISAMLSVP 528 (573)
Q Consensus 462 P~~~~~~~a~~~L~~lgald~~~~lT~lG~~~~~lp~~p~~~~~l~~~~~~~c~~--~~~~i~a~l~~~ 528 (573)
|+..++++|++.|..+||||++|+||++|+.|++||+||++||||+.|..++|.. .++.|||+++.+
T Consensus 381 P~~~~~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~ 449 (812)
T PRK11664 381 PPAAALAAAKRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEP 449 (812)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999998753 778888888775
No 12
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.1e-59 Score=515.43 Aligned_cols=400 Identities=21% Similarity=0.282 Sum_probs=301.8
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcC------ccCCC-hh-hcCceEEEEecCcccccccHHHHHHHhh
Q 008221 69 QQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEG------VDIET-PD-RRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 69 ~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~------~~~~~-~~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
.+|+++++.+.+|+++++.|+|||||||++|+++++. ..... .. ......+++++|++..+.+++.++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999988653 11000 00 1123568889999888877777776544
Q ss_pred hhcccchhceeeeecccccc-------cccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHh
Q 008221 141 DVTIGEEVGYSIRFEDCSSA-------RTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN 213 (573)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~~-------~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~ 213 (573)
+......+...+++++.... ...+.+.|++. ....+.++++||+||||+++...|.++.+++++...
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 33211111223344433211 12344556542 223588999999999999999999999999877544
Q ss_pred CCCcEEEEeccccc--HHHHHchhCCCCeeeecCcc-cCCcccccCCCc-----hhHHHHHHHHHHHHhh---cCCCCCE
Q 008221 214 RPDLKLVVMSATLE--AEKFQGYFYGAPLMKVPGRL-HPVEIFYTQEPE-----RDYLEAAIRTVVQIHM---CEPSGDI 282 (573)
Q Consensus 214 ~~~~~iil~SATl~--~~~~~~~~~~~~~i~v~g~~-~~v~~~y~~~~~-----~~~~~~~~~~l~~i~~---~~~~g~i 282 (573)
..|+++||||++ .+.+.+||.+++++.++|+. +||+++|..... .++.......+...+. ....|++
T Consensus 321 --~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~i 398 (675)
T PHA02653 321 --IRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSG 398 (675)
T ss_pred --cCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcE
Confidence 358999999995 56788999999999999985 999999976432 1222221112222222 1245799
Q ss_pred EEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCC-CCCCCCCCCCCceEEEeeccccccccc
Q 008221 283 LVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPA-PPPSKEGGPPGRKIVVSTNIAETSLTI 361 (573)
Q Consensus 283 LVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~-~~g~~~~~~~~~kvllaT~iae~gitI 361 (573)
|||+||+.+++.+++.|.+.. +++.+.+|||+|++.++ +++.| ++|+ ++||||||||||||||
T Consensus 399 LVFlpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~eq--~l~~ff~~gk-------~kILVATdIAERGIDI 462 (675)
T PHA02653 399 IVFVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNIDE--ILEKVYSSKN-------PSIIISTPYLESSVTI 462 (675)
T ss_pred EEEECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHHH--HHHHHhccCc-------eeEEeccChhhccccc
Confidence 999999999999999998641 36889999999998643 33444 5666 8999999999999999
Q ss_pred CCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhhhhcCCCChhhhhccCchhH
Q 008221 362 DGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANT 441 (573)
Q Consensus 362 ~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~~~~~~~pei~r~~l~~~ 441 (573)
|||++|||+|+++.+. +..+. ..|+|+++|+||+|||||+++|.||+||+++++. +++++...+|.++
T Consensus 463 p~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~~------pI~ri~~~~L~~~ 530 (675)
T PHA02653 463 RNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLLK------PIKRIDSEFLHNY 530 (675)
T ss_pred cCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHhH------HHHHHhHHHHHHH
Confidence 9999999999887663 33333 4599999999999999999999999999998751 1344444448999
Q ss_pred HHHHHHcCCCccccccCCCCCcHHHHHHHHHHHHHcCCccCCCCcChh--hhhhhcCCCChhhhhhhhhCCC
Q 008221 442 VLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEM--GEKMSEFPLDPQMSKMLVESPK 511 (573)
Q Consensus 442 ~L~~k~~~~~~~~~~~~~~pP~~~~~~~a~~~L~~lgald~~~~lT~l--G~~~~~lp~~p~~~~~l~~~~~ 511 (573)
+|++|+||++.. .+.|+|||+++++.+|++.|..+||+|+ +||.+ |+.++.+ ++||++++|..
T Consensus 531 vL~lk~~g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 531 ILYAKYFNLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGI 595 (675)
T ss_pred HHHHHHcCCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccH
Confidence 999999999544 4569999999999999999999998865 79999 9999999 99999998864
No 13
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=2.9e-55 Score=463.36 Aligned_cols=500 Identities=33% Similarity=0.550 Sum_probs=423.9
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccH
Q 008221 53 QRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSV 132 (573)
Q Consensus 53 ~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v 132 (573)
+.+..+++.+..+|+....++++.++..+.+++|.|+|||||||++-+++++....... .....++.+||+++.++++
T Consensus 365 ~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~--g~~~na~v~qprrisaisi 442 (1282)
T KOG0921|consen 365 EALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN--GASFNAVVSQPRRISAISL 442 (1282)
T ss_pred cchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc--cccccceeccccccchHHH
Confidence 45667788899999999999999999999999999999999999999999987653221 1224567889999999999
Q ss_pred HHHHHHhhhhcccchhceeeeecccccc-cccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHH
Q 008221 133 SRRVAEEMDVTIGEEVGYSIRFEDCSSA-RTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVL 211 (573)
Q Consensus 133 ~~~v~~~~~~~~~~~vg~~~~~~~~~~~-~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~ 211 (573)
+++++.+++..++..+||.+|+++.... ...+.++|-|.+++.+-+. +....++|+||.|+|..+.|+++-+++.+.
T Consensus 443 aerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~m~ 520 (1282)
T KOG0921|consen 443 AERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLREMI 520 (1282)
T ss_pred HHHHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHhhh
Confidence 9999999999999999999999987654 5678899999999987764 788999999999999999999999999999
Q ss_pred HhCCCcEEEEecccccHHHHHchhCCCCeeeecCcccCCcccccCC--------C-----------------chh-----
Q 008221 212 KNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQE--------P-----------------ERD----- 261 (573)
Q Consensus 212 ~~~~~~~iil~SATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~--------~-----------------~~~----- 261 (573)
...+++.+++||||++.+.|..||..+|.+.+.|+.+||+.+|+.. + ..+
T Consensus 521 ~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n 600 (1282)
T KOG0921|consen 521 STYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRN 600 (1282)
T ss_pred ccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccc
Confidence 8888999999999999999999999999999999999998887531 0 000
Q ss_pred --------H----------------HHHHHHH-HHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEE
Q 008221 262 --------Y----------------LEAAIRT-VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV 316 (573)
Q Consensus 262 --------~----------------~~~~~~~-l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~ 316 (573)
+ ...+.+. +..+....-+|.||||+|++++|..++..|..+. .......+.++
T Consensus 601 ~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~--~fg~~~~y~il 678 (1282)
T KOG0921|consen 601 MNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQ--EFGQANKYEIL 678 (1282)
T ss_pred cccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhh--hhccchhcccc
Confidence 0 0001111 1233334457899999999999999999987642 22345578999
Q ss_pred EecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhh
Q 008221 317 PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKAS 396 (573)
Q Consensus 317 ~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~ 396 (573)
++|+.+...+|.++|++.+.|. .|+|++||+||++|||++++||||.+..+.+-|-....+....++|.|+-+
T Consensus 679 p~Hsq~~~~eqrkvf~~~p~gv-------~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn 751 (1282)
T KOG0921|consen 679 PLHSQLTSQEQRKVFEPVPEGV-------TKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTN 751 (1282)
T ss_pred cchhhcccHhhhhccCcccccc-------cccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccc
Confidence 9999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCCeEEeccchhhhhhhcCCCChhhhhccCchhHHHHHHHcCCCccccc--cCCCCCcHHHHHHHHHHH
Q 008221 397 AHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF--DFMDPPAPETLMRALEVL 474 (573)
Q Consensus 397 ~~qR~GRaGR~~~G~~~~l~t~~~~~~~~~~~~~pei~r~~l~~~~L~~k~~~~~~~~~~--~~~~pP~~~~~~~a~~~L 474 (573)
-+||.||+||.++|.||++.+...| +.++.+..||+.|.++.+..|.+|.+....+..| .-+.||+..++..+-..|
T Consensus 752 ~eqr~gr~grvR~G~~f~lcs~arF-~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l 830 (1282)
T KOG0921|consen 752 LEQRKGRAGRVRPGFCFHLCSRARF-EALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVL 830 (1282)
T ss_pred hHhhcccCceecccccccccHHHHH-HHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHH
Confidence 9999999999999999999999999 6899999999999999999999998766665555 568999999999999999
Q ss_pred HHcCCccCCCCcChhhhhhhcCCCChhhhhhhhhCCCCCCHHHHHHHHHhhcCCCcccCChhhHHHHHHHHhhhC-----
Q 008221 475 NYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFG----- 549 (573)
Q Consensus 475 ~~lgald~~~~lT~lG~~~~~lp~~p~~~~~l~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~----- 549 (573)
+.++++|.+..+|++|+.++++|+.|+++||++.+..++|.+-|+..|+.+++..+|..-.....+..-.++.|+
T Consensus 831 ~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfs 910 (1282)
T KOG0921|consen 831 REMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFS 910 (1282)
T ss_pred HHhhhhhccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhccccccc
Confidence 999999999999999999999999999999999999999999999999999987766532111111122233343
Q ss_pred -CCCChHHHHHHHHHHHH
Q 008221 550 -HIDGDHLTLLNVYHAYK 566 (573)
Q Consensus 550 -~~~sD~~~~l~~~~~~~ 566 (573)
+..+||.+++..|+.|.
T Consensus 911 dhva~~~v~q~~r~~~q~ 928 (1282)
T KOG0921|consen 911 DHVAIVSVIQGYREAVQM 928 (1282)
T ss_pred cchhhhhhhhhhHHHhhh
Confidence 23356666666666664
No 14
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-49 Score=387.84 Aligned_cols=340 Identities=19% Similarity=0.200 Sum_probs=276.4
Q ss_pred cccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEE
Q 008221 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (573)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~ 120 (573)
....+|.++++.+++.+++++.++..|+++|.+.||.+..|++|++.++||||||.+|..++++... ..+.....+++.
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL-~~p~~~~~lVLt 136 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLL-QEPKLFFALVLT 136 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHH-cCCCCceEEEec
Confidence 4456899999999999999999999999999999999999999999999999999999988887654 344445678889
Q ss_pred EecCcccccccHHHHHHHhhhhcccchhceeeeeccccc--ccccccccCHHHHHHHHhc-ccc-cCCCcEEEEeCCCcC
Q 008221 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMT-DPL-LERYKVIVLDEAHER 196 (573)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~r~~~~-~~l-l~~~~~lILDEa~~r 196 (573)
|+++++.|+-.+++.+....+..+...+|.......... ....|.+.|||++.+++.. +-+ +.+.+++|||||| |
T Consensus 137 PtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-r 215 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-R 215 (476)
T ss_pred CcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-h
Confidence 999999888888888888888887777875533332222 2345668999999999984 444 8999999999998 4
Q ss_pred cccHHHHHHHHHHHHHhCC-CcEEEEecccccH--HHHHc-hhCCCCeeeecCc---ccCCcccccCCCchhHHHHHHHH
Q 008221 197 TLATDVLFGLLKEVLKNRP-DLKLVVMSATLEA--EKFQG-YFYGAPLMKVPGR---LHPVEIFYTQEPERDYLEAAIRT 269 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~~~-~~~iil~SATl~~--~~~~~-~~~~~~~i~v~g~---~~~v~~~y~~~~~~~~~~~~~~~ 269 (573)
+..+.|...+..+++..| ++|+++|||||.. .++.. -+.++..+.+... ...++++|+..+..++...++.+
T Consensus 216 -lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~l 294 (476)
T KOG0330|consen 216 -LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYL 294 (476)
T ss_pred -hhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHH
Confidence 444445555666665544 8999999999963 44443 3333334444433 23578889888877665544433
Q ss_pred HHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEE
Q 008221 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (573)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (573)
+ +....+.+|||++++...+.++-.|+.. ++.+++|||.|++..|..+|+.|+.|. |.|+
T Consensus 295 l----~e~~g~s~iVF~~t~~tt~~la~~L~~l---------g~~a~~LhGqmsq~~Rlg~l~~Fk~~~-------r~iL 354 (476)
T KOG0330|consen 295 L----NELAGNSVIVFCNTCNTTRFLALLLRNL---------GFQAIPLHGQMSQSKRLGALNKFKAGA-------RSIL 354 (476)
T ss_pred H----HhhcCCcEEEEEeccchHHHHHHHHHhc---------CcceecccchhhHHHHHHHHHHHhccC-------CcEE
Confidence 3 3344578999999999999999999876 899999999999999999999999999 9999
Q ss_pred EeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 350 laT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
+|||||+||+|||.|++|||||+ |.+..+|+||+||+||+ ++|.++.|+|+.+.
T Consensus 355 v~TDVaSRGLDip~Vd~VVNyDi------------------P~~skDYIHRvGRtaRaGrsG~~ItlVtqyDv 409 (476)
T KOG0330|consen 355 VCTDVASRGLDIPHVDVVVNYDI------------------PTHSKDYIHRVGRTARAGRSGKAITLVTQYDV 409 (476)
T ss_pred EecchhcccCCCCCceEEEecCC------------------CCcHHHHHHHcccccccCCCcceEEEEehhhh
Confidence 99999999999999999999999 99999999999999999 99999999998544
No 15
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-47 Score=396.26 Aligned_cols=341 Identities=17% Similarity=0.243 Sum_probs=270.1
Q ss_pred ccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCcc-----CCChhhcCceEE
Q 008221 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVD-----IETPDRRRKMMI 119 (573)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~-----~~~~~~~~~~~i 119 (573)
.|+++++|.....+++..++..|+++|.+.++.+.+|++++.++.||||||..|..+.+.... ......+..+++
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 689999999999999999999999999999999999999999999999999988866553332 112233456778
Q ss_pred EEecCcccccccHHHHHHHhhhhcccchhceeeeecccccc--cccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcC
Q 008221 120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA--RTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHER 196 (573)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~--~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r 196 (573)
+||++++.|+..++..+...........+|......+.... .-.|.+.|||++..++....+ +++++++|||||| +
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-r 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-R 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-h
Confidence 88888888877777777666554444555543222222222 234778899999999988887 9999999999999 5
Q ss_pred cccHHHHHHHHHHHHHhC--CCcEEEEecccccH--HHHHchhCCCCe-eeecCc-----ccCCcccccCCCchhHHHHH
Q 008221 197 TLATDVLFGLLKEVLKNR--PDLKLVVMSATLEA--EKFQGYFYGAPL-MKVPGR-----LHPVEIFYTQEPERDYLEAA 266 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~~--~~~~iil~SATl~~--~~~~~~~~~~~~-i~v~g~-----~~~v~~~y~~~~~~~~~~~~ 266 (573)
+++++ |...++.++... +..|++++|||++. ..++.-|.+.|+ +.+.+. .+.+.+....+....+...+
T Consensus 251 MldmG-Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l 329 (519)
T KOG0331|consen 251 MLDMG-FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKL 329 (519)
T ss_pred hhccc-cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHH
Confidence 56555 666666666544 36689999999975 456644433444 333322 35677766666655555544
Q ss_pred HHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCc
Q 008221 267 IRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGR 346 (573)
Q Consensus 267 ~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~ 346 (573)
...+..+. .+..+++||||.++..++++.+.|... ++.+.+|||+.+|.+|..+++.|++|+ .
T Consensus 330 ~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~---------~~~a~~iHGd~sQ~eR~~~L~~FreG~-------~ 392 (519)
T KOG0331|consen 330 GKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRK---------GWPAVAIHGDKSQSERDWVLKGFREGK-------S 392 (519)
T ss_pred HHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhc---------CcceeeecccccHHHHHHHHHhcccCC-------c
Confidence 44444444 677899999999999999999999864 689999999999999999999999999 9
Q ss_pred eEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhhh
Q 008221 347 KIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (573)
Q Consensus 347 kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~ 422 (573)
.||||||||+||||||||++||||++ |-+.++|+||+|||||+ +.|.+|.||+..++.
T Consensus 393 ~vLVATdVAaRGLDi~dV~lVInydf------------------P~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 393 PVLVATDVAARGLDVPDVDLVINYDF------------------PNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred ceEEEcccccccCCCccccEEEeCCC------------------CCCHHHHHhhcCccccCCCCceEEEEEeHHHHH
Confidence 99999999999999999999999999 99999999999999998 899999999998873
No 16
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-45 Score=399.21 Aligned_cols=337 Identities=20% Similarity=0.285 Sum_probs=273.2
Q ss_pred CccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcC-ceEEEEe
Q 008221 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRR-KMMIACT 122 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~-~~~i~~t 122 (573)
..|.++++++++++.+.+.+|..|+++|.+.||.+..|+++++.++||||||.+|..++++........... .++++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 569999999999999999999999999999999999999999999999999999999988775421111111 6888999
Q ss_pred cCcccccccHHHHHHHhh-hhcccchhceeeeeccccc--ccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcc
Q 008221 123 QPRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTL 198 (573)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~ 198 (573)
++++.|...++..+.... +..+...+|......+... ....|.+.|||++++++....+ +.+++++||||||+ ++
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr-mL 187 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR-ML 187 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh-hh
Confidence 999999988888888877 4555555553211111111 1366889999999999988876 99999999999994 45
Q ss_pred cHHHHHHHHHHHHHhCC-CcEEEEecccccH--HHHH-chhCCCCeeeec--C---cccCCcccccCCCchhHHHHHHHH
Q 008221 199 ATDVLFGLLKEVLKNRP-DLKLVVMSATLEA--EKFQ-GYFYGAPLMKVP--G---RLHPVEIFYTQEPERDYLEAAIRT 269 (573)
Q Consensus 199 ~~d~ll~~l~~l~~~~~-~~~iil~SATl~~--~~~~-~~~~~~~~i~v~--g---~~~~v~~~y~~~~~~~~~~~~~~~ 269 (573)
++ .|.+.+..+....| +.|+++||||++. ..++ .|+.++..+.+. . ....++++|..+...+ .....
T Consensus 188 d~-Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~ 263 (513)
T COG0513 188 DM-GFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLEL 263 (513)
T ss_pred cC-CCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH---HHHHH
Confidence 55 66666666666554 7999999999975 3344 455555455554 1 2356888888877654 22335
Q ss_pred HHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEE
Q 008221 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (573)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (573)
+..+......+++|||++++..++.++..|... ++.+..|||+|+|++|.++++.|++|. .+|+
T Consensus 264 L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~---------g~~~~~lhG~l~q~~R~~~l~~F~~g~-------~~vL 327 (513)
T COG0513 264 LLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR---------GFKVAALHGDLPQEERDRALEKFKDGE-------LRVL 327 (513)
T ss_pred HHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC---------CCeEEEecCCCCHHHHHHHHHHHHcCC-------CCEE
Confidence 555555566678999999999999999999875 799999999999999999999999998 8999
Q ss_pred EeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchh
Q 008221 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEK 419 (573)
Q Consensus 350 laT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~ 419 (573)
||||||+||||||+|++||||++ |.+.++|+||+|||||+ +.|.++.|++++
T Consensus 328 VaTDvaaRGiDi~~v~~VinyD~------------------p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 328 VATDVAARGLDIPDVSHVINYDL------------------PLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred EEechhhccCCccccceeEEccC------------------CCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 99999999999999999999999 99999999999999999 899999999964
No 17
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-45 Score=346.23 Aligned_cols=341 Identities=17% Similarity=0.237 Sum_probs=280.9
Q ss_pred cccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEE
Q 008221 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (573)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~ 120 (573)
....+|++++++..+++.+...|+..|+.+|++.++.|..|++|+..+.+|+|||..+..-++...++.. ...+.+++.
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~-r~tQ~lils 102 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV-RETQALILS 102 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc-ceeeEEEec
Confidence 3467899999999999999999999999999999999999999999999999999999877776666432 224567888
Q ss_pred EecCcccccccHHHHHHHhhhhcccchhceeeeeccccc--ccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCc
Q 008221 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERT 197 (573)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~ 197 (573)
||++++.|...+...++..++......+|...-.++... ....+...|||+..+++..+.+ -..+++|||||||+
T Consensus 103 PTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-- 180 (400)
T KOG0328|consen 103 PTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-- 180 (400)
T ss_pred ChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH--
Confidence 999998888888888888888777666664432222221 2345667899999999988888 78899999999997
Q ss_pred ccHHHHHHHHHHHHHhCC-CcEEEEecccccHHH--HHchhCCCCee-eecC--c-ccCCcccccCCCchhHHHHHHHHH
Q 008221 198 LATDVLFGLLKEVLKNRP-DLKLVVMSATLEAEK--FQGYFYGAPLM-KVPG--R-LHPVEIFYTQEPERDYLEAAIRTV 270 (573)
Q Consensus 198 ~~~d~ll~~l~~l~~~~~-~~~iil~SATl~~~~--~~~~~~~~~~i-~v~g--~-~~~v~~~y~~~~~~~~~~~~~~~l 270 (573)
+....+-+.+-++.+..| +.|++++|||++.+. ..++|...|+- -++. . ...+++||......++ ..+++
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew---KfdtL 257 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW---KFDTL 257 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh---hHhHH
Confidence 555566666666655544 999999999997654 44566555553 3322 1 2348899988765553 44566
Q ss_pred HHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEE
Q 008221 271 VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (573)
Q Consensus 271 ~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvll 350 (573)
+.++..-.-.+.++||+|++.++++.+++++. ++.+.++||+|++++|.++...|+.|+ .+|++
T Consensus 258 cdLYd~LtItQavIFcnTk~kVdwLtekm~~~---------nftVssmHGDm~qkERd~im~dFRsg~-------SrvLi 321 (400)
T KOG0328|consen 258 CDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMEQKERDKIMNDFRSGK-------SRVLI 321 (400)
T ss_pred HHHhhhhehheEEEEecccchhhHHHHHHHhh---------CceeeeccCCcchhHHHHHHHHhhcCC-------ceEEE
Confidence 66666556668999999999999999999875 899999999999999999999999999 89999
Q ss_pred eecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 351 aT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
+|||-+||+|+|.|.+||||++ |...+.|+||+||.||. +.|+++.|...++.
T Consensus 322 tTDVwaRGiDv~qVslviNYDL------------------P~nre~YIHRIGRSGRFGRkGvainFVk~~d~ 375 (400)
T KOG0328|consen 322 TTDVWARGIDVQQVSLVINYDL------------------PNNRELYIHRIGRSGRFGRKGVAINFVKSDDL 375 (400)
T ss_pred EechhhccCCcceeEEEEecCC------------------CccHHHHhhhhccccccCCcceEEEEecHHHH
Confidence 9999999999999999999999 99999999999999999 99999999998876
No 18
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-44 Score=358.77 Aligned_cols=357 Identities=19% Similarity=0.212 Sum_probs=274.4
Q ss_pred ccCCC--CCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC----hhhcCceE
Q 008221 45 RWNGK--PYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET----PDRRRKMM 118 (573)
Q Consensus 45 ~f~~~--~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~----~~~~~~~~ 118 (573)
.|+++ +|++|+++.+...||..++++|...||.+..+++|++.++||||||.+|..++++-....+ +....+++
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 46665 5669999999999999999999999999999999999999999999999988775442111 12234678
Q ss_pred EEEecCcccccccHHHHHHHh-hhhcccchhceeeeeccc---ccccccccccCHHHHHHHHhccc-c--cCCCcEEEEe
Q 008221 119 IACTQPRRVAAMSVSRRVAEE-MDVTIGEEVGYSIRFEDC---SSARTVLKYLTDGMLLREAMTDP-L--LERYKVIVLD 191 (573)
Q Consensus 119 i~~t~p~~~~~~~v~~~v~~~-~~~~~~~~vg~~~~~~~~---~~~~~~i~~lT~G~l~r~~~~~~-l--l~~~~~lILD 191 (573)
|.||+++..|+.+|+..+... .+......+|...-.++. ......|.+.|||++..++...+ . +.+.++||||
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 899999999999998887665 233333344432111111 12245688899999999887743 3 4489999999
Q ss_pred CCCcCcccHHHHHHHHHHHHHhCC-CcEEEEeccccc--HHHHH-chhCCCCeeeecCcc---cC--CcccccCCCchhH
Q 008221 192 EAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLE--AEKFQ-GYFYGAPLMKVPGRL---HP--VEIFYTQEPERDY 262 (573)
Q Consensus 192 Ea~~r~~~~d~ll~~l~~l~~~~~-~~~iil~SATl~--~~~~~-~~~~~~~~i~v~g~~---~~--v~~~y~~~~~~~~ 262 (573)
|||. +....|...+..++...| ++++-|||||.. ++.+. ..+.|+..+.|.... .| +..+|..+....+
T Consensus 165 EADr--LldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 165 EADR--LLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred chHh--HhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 9984 555556666666666555 789999999995 34444 445565555554332 33 7888988877666
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCC
Q 008221 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGG 342 (573)
Q Consensus 263 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~ 342 (573)
...++. +......+++|||+||++.+++....+... .++..++++||.|.+.+|.++++.|....
T Consensus 243 ~~~lv~----~L~~~~~kK~iVFF~TCasVeYf~~~~~~~-------l~~~~i~~iHGK~~q~~R~k~~~~F~~~~---- 307 (567)
T KOG0345|consen 243 LSQLVH----LLNNNKDKKCIVFFPTCASVEYFGKLFSRL-------LKKREIFSIHGKMSQKARAKVLEAFRKLS---- 307 (567)
T ss_pred HHHHHH----HHhccccccEEEEecCcchHHHHHHHHHHH-------hCCCcEEEecchhcchhHHHHHHHHHhcc----
Confidence 654444 444466789999999999999999999775 34789999999999999999999998866
Q ss_pred CCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccc--hh
Q 008221 343 PPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYT--EK 419 (573)
Q Consensus 343 ~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t--~~ 419 (573)
..|++|||||+||||||||+|||++|. |.+.++++||+|||||. +.|.++.|.. ++
T Consensus 308 ---~~vl~~TDVaARGlDip~iD~VvQ~Dp------------------P~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~ 366 (567)
T KOG0345|consen 308 ---NGVLFCTDVAARGLDIPGIDLVVQFDP------------------PKDPSSFVHRCGRTARAGREGNAIVFLNPREE 366 (567)
T ss_pred ---CceEEeehhhhccCCCCCceEEEecCC------------------CCChhHHHhhcchhhhccCccceEEEecccHH
Confidence 789999999999999999999999888 99999999999999999 8898887765 45
Q ss_pred hhhhhcCCCChhhhhccCch
Q 008221 420 SFNNDLQPQTYPEILRSNLA 439 (573)
Q Consensus 420 ~~~~~~~~~~~pei~r~~l~ 439 (573)
+|.+.|.....|++.+.+.+
T Consensus 367 aYveFl~i~~~v~le~~~~e 386 (567)
T KOG0345|consen 367 AYVEFLRIKGKVELERIDTE 386 (567)
T ss_pred HHHHHHHhcCccchhhhccc
Confidence 56666777777777665544
No 19
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-44 Score=363.97 Aligned_cols=340 Identities=19% Similarity=0.248 Sum_probs=269.6
Q ss_pred cCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC--hhhcCceEEE
Q 008221 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET--PDRRRKMMIA 120 (573)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~--~~~~~~~~i~ 120 (573)
..+|.+++||.++++++...||..|+|+|..+||...-|++++.++.||||||.+|..++++...... ....+.++++
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 34799999999999999999999999999999999999999999999999999999999887765332 1223457889
Q ss_pred EecCcccccccHHHHHHHhhhhcccchhcee-eeec-ccccccccccccCHHHHHHHHhcccc--cCCCcEEEEeCCCcC
Q 008221 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYS-IRFE-DCSSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHER 196 (573)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~-~~~~-~~~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lILDEa~~r 196 (573)
||+++.+|+.+|.+++++.....++..+|.. ++.. ........|.+.|||++.+++-..+- +.++.++||||||.
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR- 338 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR- 338 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH-
Confidence 9999999999999999999998888888743 2221 12233566889999999999987664 99999999999985
Q ss_pred cccHHHHHHHHHHHHHhCC-CcEEEEecccccH--HHHHchhCCCCe-eeecCc---ccCCcccccCC-CchhH-HHHHH
Q 008221 197 TLATDVLFGLLKEVLKNRP-DLKLVVMSATLEA--EKFQGYFYGAPL-MKVPGR---LHPVEIFYTQE-PERDY-LEAAI 267 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~~~-~~~iil~SATl~~--~~~~~~~~~~~~-i~v~g~---~~~v~~~y~~~-~~~~~-~~~~~ 267 (573)
+..+.|-+.++++++..| ++|++||||||.. ..++..-.+-|+ +.+... .....+.|+.. +.++. -+..+
T Consensus 339 -MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l 417 (691)
T KOG0338|consen 339 -MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAML 417 (691)
T ss_pred -HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHH
Confidence 666777888888877665 8899999999953 455544334343 333321 12234444422 11111 11122
Q ss_pred HHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCce
Q 008221 268 RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRK 347 (573)
Q Consensus 268 ~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~k 347 (573)
..+ ....-...++||+.++..+..+.-+|.-. ++.+.-|||+|+|.+|..+++.|+.+. ..
T Consensus 418 ~~l---~~rtf~~~~ivFv~tKk~AHRl~IllGLl---------gl~agElHGsLtQ~QRlesL~kFk~~e-------id 478 (691)
T KOG0338|consen 418 ASL---ITRTFQDRTIVFVRTKKQAHRLRILLGLL---------GLKAGELHGSLTQEQRLESLEKFKKEE-------ID 478 (691)
T ss_pred HHH---HHHhcccceEEEEehHHHHHHHHHHHHHh---------hchhhhhcccccHHHHHHHHHHHHhcc-------CC
Confidence 221 12223458999999999999887766543 889999999999999999999999998 99
Q ss_pred EEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 348 IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 348 vllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
||||||+|+|||||++|..||||.+ |.+.+.|+||+|||.|+ +.|.+++|..+.+-
T Consensus 479 vLiaTDvAsRGLDI~gV~tVINy~m------------------P~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dR 535 (691)
T KOG0338|consen 479 VLIATDVASRGLDIEGVQTVINYAM------------------PKTIEHYLHRVGRTARAGRAGRSVTLVGESDR 535 (691)
T ss_pred EEEEechhhccCCccceeEEEeccC------------------chhHHHHHHHhhhhhhcccCcceEEEeccccH
Confidence 9999999999999999999999999 99999999999999999 89999999998865
No 20
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.2e-43 Score=358.46 Aligned_cols=342 Identities=18% Similarity=0.231 Sum_probs=270.5
Q ss_pred ccccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccC-C-------Ch
Q 008221 40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI-E-------TP 111 (573)
Q Consensus 40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~-~-------~~ 111 (573)
+.++.+|++.+|+.++++++..-++..|+++|...||...++.+++.+++||||||.+|+.+++.-... + ..
T Consensus 241 pnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~ 320 (673)
T KOG0333|consen 241 PNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNI 320 (673)
T ss_pred CccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcc
Confidence 456788999999999999999999999999999999999999999999999999999988665533211 1 12
Q ss_pred hhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeecc--cccccccccccCHHHHHHHHhcccc-cCCCcEE
Q 008221 112 DRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVI 188 (573)
Q Consensus 112 ~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~l 188 (573)
..+.++++.||+++..++..-...+++..+..+...||....-++ ..+....|.+.|||++...+-.+-+ ++++.++
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyv 400 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYV 400 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceE
Confidence 234567888999888888877888888888888788876543333 2344577889999999999888776 9999999
Q ss_pred EEeCCCcCcccHHH---HHHHHHHHHHhC--------------------C--CcEEEEecccccH--HHHH-chhCCCCe
Q 008221 189 VLDEAHERTLATDV---LFGLLKEVLKNR--------------------P--DLKLVVMSATLEA--EKFQ-GYFYGAPL 240 (573)
Q Consensus 189 ILDEa~~r~~~~d~---ll~~l~~l~~~~--------------------~--~~~iil~SATl~~--~~~~-~~~~~~~~ 240 (573)
|||||| +++++.+ ...+|..+-... . -+++++|||||.. +.++ .||..+.+
T Consensus 401 vldead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~ 479 (673)
T KOG0333|consen 401 VLDEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVV 479 (673)
T ss_pred eccchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeE
Confidence 999998 4555444 333332211000 0 1689999999963 5555 67777666
Q ss_pred eeec--CcccC-CcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEE
Q 008221 241 MKVP--GRLHP-VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVP 317 (573)
Q Consensus 241 i~v~--g~~~~-v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~ 317 (573)
+.+. |+..| |++...-....++...+ ..+.......+|+||+|++..++.+++.|.+. ++.+..
T Consensus 480 vtig~~gk~~~rveQ~v~m~~ed~k~kkL----~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~---------g~~~~t 546 (673)
T KOG0333|consen 480 VTIGSAGKPTPRVEQKVEMVSEDEKRKKL----IEILESNFDPPIIIFVNTKKGADALAKILEKA---------GYKVTT 546 (673)
T ss_pred EEeccCCCCccchheEEEEecchHHHHHH----HHHHHhCCCCCEEEEEechhhHHHHHHHHhhc---------cceEEE
Confidence 6553 33333 55555444444444433 33444445668999999999999999999986 799999
Q ss_pred ecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhH
Q 008221 318 LYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASA 397 (573)
Q Consensus 318 lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~ 397 (573)
|||+-++++|..+++.|+.|. ..|+||||+|+||||||||.+||||++ +.|.++|
T Consensus 547 lHg~k~qeQRe~aL~~fr~~t-------~dIlVaTDvAgRGIDIpnVSlVinydm------------------aksieDY 601 (673)
T KOG0333|consen 547 LHGGKSQEQRENALADFREGT-------GDILVATDVAGRGIDIPNVSLVINYDM------------------AKSIEDY 601 (673)
T ss_pred eeCCccHHHHHHHHHHHHhcC-------CCEEEEecccccCCCCCccceeeecch------------------hhhHHHH
Confidence 999999999999999999988 799999999999999999999999999 9999999
Q ss_pred HHhccccCCC-CCCeEEeccchhh
Q 008221 398 HQRSGRAGRT-QPGKCFRLYTEKS 420 (573)
Q Consensus 398 ~qR~GRaGR~-~~G~~~~l~t~~~ 420 (573)
.||+|||||+ +.|.+++|||+++
T Consensus 602 tHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 602 THRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred HHHhccccccccCceeEEEeccch
Confidence 9999999999 8899999999987
No 21
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-43 Score=360.11 Aligned_cols=341 Identities=19% Similarity=0.251 Sum_probs=280.2
Q ss_pred cCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccC---CChhhcCceEE
Q 008221 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI---ETPDRRRKMMI 119 (573)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~---~~~~~~~~~~i 119 (573)
+..|.++++|.+.++.|++.++..++.+|...|+....|.+|+..+.||||||.+|..++++.... ....+...++|
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 447999999999999999999999999999999999999999999999999999999887765432 22334456788
Q ss_pred EEecCcccccccHHHHHHHhhhhcccchhcee-eeecccccccccccccCHHHHHHHHhcccc--cCCCcEEEEeCCCcC
Q 008221 120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYS-IRFEDCSSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHER 196 (573)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~-~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lILDEa~~r 196 (573)
.||+++++|+..+...+++......|..+|.. +.++......-.|.+||||++++++-..+. ..+.++||||||| |
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-R 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-H
Confidence 99999999999999999998888888888754 223322333567889999999999988775 6788999999998 4
Q ss_pred cccHHHHHHHHHHHHHhCC-CcEEEEeccccc--HHHHHchh-CCCCeeeec-----CcccCCcccccCCCchhHHHHHH
Q 008221 197 TLATDVLFGLLKEVLKNRP-DLKLVVMSATLE--AEKFQGYF-YGAPLMKVP-----GRLHPVEIFYTQEPERDYLEAAI 267 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~~~-~~~iil~SATl~--~~~~~~~~-~~~~~i~v~-----g~~~~v~~~y~~~~~~~~~~~~~ 267 (573)
.++ ..|-..|..++...| .+|++|||||-. +..+++.- .++..|.+- +.+....++|..++..+++.
T Consensus 227 ~LD-MGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~--- 302 (758)
T KOG0343|consen 227 MLD-MGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID--- 302 (758)
T ss_pred HHH-HhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHH---
Confidence 444 455556666665554 789999999984 45666553 344444432 23445788998888777755
Q ss_pred HHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCce
Q 008221 268 RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRK 347 (573)
Q Consensus 268 ~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~k 347 (573)
.++....+.....+|||++|+.++..+++...+. .+++.++.|||.|+|..|..++..|-..+ .-
T Consensus 303 -~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-------rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~-------~~ 367 (758)
T KOG0343|consen 303 -MLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-------RPGIPLLALHGTMSQKKRIEVYKKFVRKR-------AV 367 (758)
T ss_pred -HHHHHHHhccccceEEEEehhhHHHHHHHHHHhc-------CCCCceeeeccchhHHHHHHHHHHHHHhc-------ce
Confidence 4555556667778999999999999999999875 56999999999999999999999998766 78
Q ss_pred EEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 348 IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 348 vllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|++|||||+||||+|.|++||+++. |.+.++|+||+||++|. ..|.|+-+.++.+.
T Consensus 368 vLF~TDv~aRGLDFpaVdwViQ~DC------------------Pedv~tYIHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 368 VLFCTDVAARGLDFPAVDWVIQVDC------------------PEDVDTYIHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred EEEeehhhhccCCCcccceEEEecC------------------chhHHHHHHHhhhhhcccCCCceEEEEcchhH
Confidence 9999999999999999999999999 99999999999999999 88999999888774
No 22
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=7.5e-43 Score=376.52 Aligned_cols=337 Identities=18% Similarity=0.233 Sum_probs=255.1
Q ss_pred CccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEec
Q 008221 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (573)
.+|+++++++.+.+.+...++..++++|+++++.+.+|++++++||||||||+++..++++.... .....+.++++|++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~-~~~~~~~lil~Ptr 82 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV-KRFRVQALVLCPTR 82 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh-ccCCceEEEEeCCH
Confidence 46999999999999999999999999999999999999999999999999999988887765431 11123456777777
Q ss_pred CcccccccHHHHHHHhh-hhcccchhceeeeecc--cccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCccc
Q 008221 124 PRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (573)
Q Consensus 124 p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~ 199 (573)
++..+.....+.+.... +..+....|....... .......|.+.|+|++.+++....+ +.++++||+||+|+ +++
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~-~l~ 161 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR-MLD 161 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH-HhC
Confidence 76666555555554332 2333333332110000 0112456888999999998877665 89999999999995 233
Q ss_pred HHHHHHHHHHHHHhCC-CcEEEEecccccH--HHHHchhCCCC-eeeecCc--ccCCcccccCCCchhHHHHHHHHHHHH
Q 008221 200 TDVLFGLLKEVLKNRP-DLKLVVMSATLEA--EKFQGYFYGAP-LMKVPGR--LHPVEIFYTQEPERDYLEAAIRTVVQI 273 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~-~~~iil~SATl~~--~~~~~~~~~~~-~i~v~g~--~~~v~~~y~~~~~~~~~~~~~~~l~~i 273 (573)
..+...+..+....| +.+++++|||++. ..+...+...| .+.+... ...++++|...+..++...+. .+
T Consensus 162 -~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~----~l 236 (460)
T PRK11776 162 -MGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQ----RL 236 (460)
T ss_pred -cCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHH----HH
Confidence 334444555555444 7899999999964 45555554433 3444332 233666666555555444333 33
Q ss_pred hhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeec
Q 008221 274 HMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 353 (573)
Q Consensus 274 ~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~ 353 (573)
.....++++||||+++.+++.+++.|... ++.+..+||+|++.+|+.+++.|++|. .+||||||
T Consensus 237 l~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------~~~v~~~hg~~~~~eR~~~l~~F~~g~-------~~vLVaTd 300 (460)
T PRK11776 237 LLHHQPESCVVFCNTKKECQEVADALNAQ---------GFSALALHGDLEQRDRDQVLVRFANRS-------CSVLVATD 300 (460)
T ss_pred HHhcCCCceEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHcCC-------CcEEEEec
Confidence 33455678999999999999999999865 788999999999999999999999998 89999999
Q ss_pred ccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 354 IAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 354 iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
++++|||||+|++|||+|+ |.+.++|+||+|||||. +.|.||.|+++++.
T Consensus 301 v~~rGiDi~~v~~VI~~d~------------------p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 301 VAARGLDIKALEAVINYEL------------------ARDPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred ccccccchhcCCeEEEecC------------------CCCHhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 9999999999999999999 99999999999999999 78999999998765
No 23
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=9.8e-43 Score=380.19 Aligned_cols=345 Identities=15% Similarity=0.167 Sum_probs=251.6
Q ss_pred CccccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccC----CChhhc
Q 008221 39 NNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI----ETPDRR 114 (573)
Q Consensus 39 ~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~----~~~~~~ 114 (573)
...+...|+++++++.+++.+..+++..++++|.++++.+.+|+++++++|||||||+++..+++..... ......
T Consensus 125 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp 204 (545)
T PTZ00110 125 VPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGP 204 (545)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCc
Confidence 3456778999999999999999999999999999999999999999999999999999876655433211 111123
Q ss_pred CceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeeccc--ccccccccccCHHHHHHHHhcccc-cCCCcEEEEe
Q 008221 115 RKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLD 191 (573)
Q Consensus 115 ~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILD 191 (573)
..++++|+++++.+....++.+...........+|........ ......|.+.|||++.+++..... +.++++||+|
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViD 284 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLD 284 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEee
Confidence 3466777777776666666655544333332233321111100 111346788999999998877654 8999999999
Q ss_pred CCCcCcccHHHHHHHHHHHHH-hCCCcEEEEecccccH--HHHHch-hCCCCe-eeecCc----ccCCcccccCCCchhH
Q 008221 192 EAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEA--EKFQGY-FYGAPL-MKVPGR----LHPVEIFYTQEPERDY 262 (573)
Q Consensus 192 Ea~~r~~~~d~ll~~l~~l~~-~~~~~~iil~SATl~~--~~~~~~-~~~~~~-i~v~g~----~~~v~~~y~~~~~~~~ 262 (573)
|||. .++. .+...++.+.. .+++.+++++|||++. +.++.. +...++ +.+... ...+++.+......++
T Consensus 285 EAd~-mld~-gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k 362 (545)
T PTZ00110 285 EADR-MLDM-GFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEK 362 (545)
T ss_pred hHHh-hhhc-chHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhH
Confidence 9994 3443 34444455443 3468999999999964 345543 433343 222211 1234444433333344
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCC
Q 008221 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGG 342 (573)
Q Consensus 263 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~ 342 (573)
...+...+..+.. ..+++|||++++..++.+++.|... ++.+..+||++++.+|..+++.|+.|.
T Consensus 363 ~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~~~L~~~---------g~~~~~ihg~~~~~eR~~il~~F~~G~---- 427 (545)
T PTZ00110 363 RGKLKMLLQRIMR--DGDKILIFVETKKGADFLTKELRLD---------GWPALCIHGDKKQEERTWVLNEFKTGK---- 427 (545)
T ss_pred HHHHHHHHHHhcc--cCCeEEEEecChHHHHHHHHHHHHc---------CCcEEEEECCCcHHHHHHHHHHHhcCC----
Confidence 4433333332221 4678999999999999999999754 778999999999999999999999998
Q ss_pred CCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 343 PPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 343 ~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
.+||||||++++|||||+|++|||+|+ |.+.++|+||+|||||. ++|.||.|+++++.
T Consensus 428 ---~~ILVaTdv~~rGIDi~~v~~VI~~d~------------------P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 428 ---SPIMIATDVASRGLDVKDVKYVINFDF------------------PNQIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred ---CcEEEEcchhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEECcchH
Confidence 899999999999999999999999999 99999999999999999 89999999998765
No 24
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-43 Score=339.65 Aligned_cols=337 Identities=18% Similarity=0.240 Sum_probs=256.4
Q ss_pred ccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEE
Q 008221 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIAC 121 (573)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~ 121 (573)
...+|+.+|+++|+.+-++.++...++++|+.+||.|.+|++++.++.||||||++|-.++++... ..+......++.|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLs-edP~giFalvlTP 83 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLS-EDPYGIFALVLTP 83 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhc-cCCCcceEEEecc
Confidence 457899999999999999999999999999999999999999999999999999999999998765 3333333444555
Q ss_pred ecCcccccccHHHHH---HHhhhhcccchhceeeeecc--cccccccccccCHHHHHHHHhcc----c-ccCCCcEEEEe
Q 008221 122 TQPRRVAAMSVSRRV---AEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTD----P-LLERYKVIVLD 191 (573)
Q Consensus 122 t~p~~~~~~~v~~~v---~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~----~-ll~~~~~lILD 191 (573)
|++++ ++.++.+ .+.++.+....+|....... ....+..+.++|||++-.++..+ . .+.+.+++|+|
T Consensus 84 TrELA---~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 84 TRELA---LQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred hHHHH---HHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 55554 4455554 44555555555664422222 22335567789999999988776 2 38899999999
Q ss_pred CCCcCcccHHHHHHHHHHHHHhCC-CcEEEEecccccHHHHHchhCCCCe-------eee-cCc--ccCCcccccCCCch
Q 008221 192 EAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLEAEKFQGYFYGAPL-------MKV-PGR--LHPVEIFYTQEPER 260 (573)
Q Consensus 192 Ea~~r~~~~d~ll~~l~~l~~~~~-~~~iil~SATl~~~~~~~~~~~~~~-------i~v-~g~--~~~v~~~y~~~~~~ 260 (573)
|||. +....+-+.|+.+....| .+|.++||||+.... ...++ +|+ ... +|. .....+.|+.++..
T Consensus 161 EADr--vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i-~ql~~-~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~ 236 (442)
T KOG0340|consen 161 EADR--VLAGCFPDILEGIEECLPKPRQTLLFSATITDTI-KQLFG-CPITKSIAFELEVIDGVSTVETLYQGYILVSID 236 (442)
T ss_pred chhh--hhccchhhHHhhhhccCCCccceEEEEeehhhHH-HHhhc-CCcccccceEEeccCCCCchhhhhhheeecchh
Confidence 9984 555566666666665555 569999999995322 11111 111 111 221 12245666666654
Q ss_pred hHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCC
Q 008221 261 DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKE 340 (573)
Q Consensus 261 ~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~ 340 (573)
.+-...+..+ .....++.+++++|++++.+++.++..|... ++.+..|||.|+|.+|..++.+|+.+.
T Consensus 237 vkdaYLv~~L-r~~~~~~~~simIFvnttr~cQ~l~~~l~~l---------e~r~~~lHs~m~Q~eR~~aLsrFrs~~-- 304 (442)
T KOG0340|consen 237 VKDAYLVHLL-RDFENKENGSIMIFVNTTRECQLLSMTLKNL---------EVRVVSLHSQMPQKERLAALSRFRSNA-- 304 (442)
T ss_pred hhHHHHHHHH-hhhhhccCceEEEEeehhHHHHHHHHHHhhh---------ceeeeehhhcchHHHHHHHHHHHhhcC--
Confidence 4322223332 3334447899999999999999999999876 899999999999999999999999998
Q ss_pred CCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchh
Q 008221 341 GGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEK 419 (573)
Q Consensus 341 ~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~ 419 (573)
.+||+|||||+||+|||.|..|||+++ |-+..+|+||+|||.|+ +.|.++.++++.
T Consensus 305 -----~~iliaTDVAsRGLDIP~V~LVvN~di------------------Pr~P~~yiHRvGRtARAGR~G~aiSivt~r 361 (442)
T KOG0340|consen 305 -----ARILIATDVASRGLDIPTVELVVNHDI------------------PRDPKDYIHRVGRTARAGRKGMAISIVTQR 361 (442)
T ss_pred -----ccEEEEechhhcCCCCCceeEEEecCC------------------CCCHHHHHHhhcchhcccCCcceEEEechh
Confidence 899999999999999999999999999 99999999999999999 899999999987
Q ss_pred hh
Q 008221 420 SF 421 (573)
Q Consensus 420 ~~ 421 (573)
+.
T Consensus 362 Dv 363 (442)
T KOG0340|consen 362 DV 363 (442)
T ss_pred hH
Confidence 76
No 25
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-43 Score=334.12 Aligned_cols=340 Identities=17% Similarity=0.210 Sum_probs=285.8
Q ss_pred cccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEE
Q 008221 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (573)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~ 120 (573)
..-+.|+++.|..+++..+-++|+..|+|+|++.||....|++++.-+.||+|||.++..++++..+ ......++++++
T Consensus 82 TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid-~~~~~IQ~~ilV 160 (459)
T KOG0326|consen 82 TKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKID-PKKNVIQAIILV 160 (459)
T ss_pred ccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcC-ccccceeEEEEe
Confidence 3457799999999999999999999999999999999999999999999999999999999998877 344556789999
Q ss_pred EecCcccccccHHHHHHHhhhhcccchhceeeeecccccccc--cccccCHHHHHHHHhccc-ccCCCcEEEEeCCCcCc
Q 008221 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSART--VLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERT 197 (573)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~--~i~~lT~G~l~r~~~~~~-ll~~~~~lILDEa~~r~ 197 (573)
|+++++++.-.++..+++.++..+....|.....++....+. .+.+.|||+.++++-.+. .++++.++|+||||.
T Consensus 161 PtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK-- 238 (459)
T KOG0326|consen 161 PTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK-- 238 (459)
T ss_pred ecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhh--
Confidence 999999999999999999998888777776654444433333 455779999999887664 499999999999985
Q ss_pred ccHHHHHHHHHHHHHhCC-CcEEEEecccccH--HHHH-chhCCCCeeeecCc--ccCCcccccCCCchhHHHHHHHHHH
Q 008221 198 LATDVLFGLLKEVLKNRP-DLKLVVMSATLEA--EKFQ-GYFYGAPLMKVPGR--LHPVEIFYTQEPERDYLEAAIRTVV 271 (573)
Q Consensus 198 ~~~d~ll~~l~~l~~~~~-~~~iil~SATl~~--~~~~-~~~~~~~~i~v~g~--~~~v~~~y~~~~~~~~~~~~~~~l~ 271 (573)
+..-.|-..+.+++...| ++|++++|||++. ..|. +|+.++-.|..-.. ...|++||..+.++.++..+ .++.
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCL-ntLf 317 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCL-NTLF 317 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhH-HHHH
Confidence 666667777777776655 8999999999973 4455 56666555655432 35689999998888776533 3333
Q ss_pred HHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEe
Q 008221 272 QIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS 351 (573)
Q Consensus 272 ~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlla 351 (573)
.- -.-.+.+|||++.+.+|.+++++.+. ++.++.+|+.|-|+.|.++|..|++|. .+.+||
T Consensus 318 sk---LqINQsIIFCNS~~rVELLAkKITel---------GyscyyiHakM~Q~hRNrVFHdFr~G~-------crnLVc 378 (459)
T KOG0326|consen 318 SK---LQINQSIIFCNSTNRVELLAKKITEL---------GYSCYYIHAKMAQEHRNRVFHDFRNGK-------CRNLVC 378 (459)
T ss_pred HH---hcccceEEEeccchHhHHHHHHHHhc---------cchhhHHHHHHHHhhhhhhhhhhhccc-------cceeee
Confidence 22 22346899999999999999999886 889999999999999999999999999 999999
Q ss_pred ecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 352 TNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 352 T~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
||+.-|||||+.|.+|||+|+ |.+.++|.||+||+||. ..|.++.|+|-++-
T Consensus 379 tDL~TRGIDiqavNvVINFDf------------------pk~aEtYLHRIGRsGRFGhlGlAInLityedr 431 (459)
T KOG0326|consen 379 TDLFTRGIDIQAVNVVINFDF------------------PKNAETYLHRIGRSGRFGHLGLAINLITYEDR 431 (459)
T ss_pred hhhhhcccccceeeEEEecCC------------------CCCHHHHHHHccCCccCCCcceEEEEEehhhh
Confidence 999999999999999999999 99999999999999999 88999999996654
No 26
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=8.6e-42 Score=376.12 Aligned_cols=337 Identities=17% Similarity=0.220 Sum_probs=252.5
Q ss_pred CccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEec
Q 008221 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (573)
.+|.++++++.+++.+.++++..++++|.++++.+.+|+++++.||||||||+++..++++.... .....+.++++|++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~-~~~~~~~LIL~PTr 84 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP-ELKAPQILVLAPTR 84 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh-ccCCCeEEEEeCcH
Confidence 45999999999999999999999999999999999999999999999999999998887765431 11123445666666
Q ss_pred CcccccccHHHHHHHhh-hhcccchhceeeeecc--cccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCccc
Q 008221 124 PRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (573)
Q Consensus 124 p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~ 199 (573)
++..|.......+.... +..+...+|....... .......|.+.|+|++.+++....+ ++++++|||||||+ +.
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~--ml 162 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE--ML 162 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH--Hh
Confidence 66555444444443322 3333333332110000 0112356889999999998887766 89999999999996 44
Q ss_pred HHHHHHHHHHHHHhCC-CcEEEEecccccH--HHHH-chhCCCCeeeecCcc---cCCcccccCCCchhHHHHHHHHHHH
Q 008221 200 TDVLFGLLKEVLKNRP-DLKLVVMSATLEA--EKFQ-GYFYGAPLMKVPGRL---HPVEIFYTQEPERDYLEAAIRTVVQ 272 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~-~~~iil~SATl~~--~~~~-~~~~~~~~i~v~g~~---~~v~~~y~~~~~~~~~~~~~~~l~~ 272 (573)
...+...+..++...| +.++++||||++. ..+. .|+.++..+.+.... ..+.+.|......++...+..
T Consensus 163 ~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~---- 238 (629)
T PRK11634 163 RMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR---- 238 (629)
T ss_pred hcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHH----
Confidence 4444455555554444 7899999999964 3333 455555555554332 234555555444444443333
Q ss_pred HhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEee
Q 008221 273 IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST 352 (573)
Q Consensus 273 i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT 352 (573)
+........+||||+++..++.+++.|... ++.+..+||+|++.+|.++++.|+.|+ .+|||||
T Consensus 239 ~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~---------g~~~~~lhgd~~q~~R~~il~~Fr~G~-------~~ILVAT 302 (629)
T PRK11634 239 FLEAEDFDAAIIFVRTKNATLEVAEALERN---------GYNSAALNGDMNQALREQTLERLKDGR-------LDILIAT 302 (629)
T ss_pred HHHhcCCCCEEEEeccHHHHHHHHHHHHhC---------CCCEEEeeCCCCHHHHHHHHHHHhCCC-------CCEEEEc
Confidence 333345678999999999999999999864 788999999999999999999999998 8999999
Q ss_pred cccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 353 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 353 ~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|++++|||||+|++||||++ |.+.++|+||+|||||. +.|.|+.+++..+.
T Consensus 303 dv~arGIDip~V~~VI~~d~------------------P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 303 DVAARGLDVERISLVVNYDI------------------PMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred chHhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 99999999999999999999 99999999999999999 78999999987654
No 27
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.1e-42 Score=365.58 Aligned_cols=338 Identities=17% Similarity=0.183 Sum_probs=251.9
Q ss_pred CccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCC------ChhhcCce
Q 008221 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIE------TPDRRRKM 117 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~------~~~~~~~~ 117 (573)
.+|+++++++++++.+...++..++++|.++++.+.+|++++++||||||||+++..++++..... .....+.+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 579999999999999999999999999999999999999999999999999998877665432211 01123456
Q ss_pred EEEEecCcccccccHHHHHHHhhhhcccchhceeeeecc--cccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCC
Q 008221 118 MIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAH 194 (573)
Q Consensus 118 ~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~ 194 (573)
+++|++++..|....++.+....+..++..+|....... .......|.+.|+|++.+++....+ +.+++++|+||||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad 167 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 167 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH
Confidence 777888877777777777766655554444432110000 0112346889999999998866555 8999999999999
Q ss_pred cCcccHHHHHHHHHHHHHhCC---CcEEEEecccccHH--HHH-chhCCCCeeeecCc---ccCCcccccCCCchhHHHH
Q 008221 195 ERTLATDVLFGLLKEVLKNRP---DLKLVVMSATLEAE--KFQ-GYFYGAPLMKVPGR---LHPVEIFYTQEPERDYLEA 265 (573)
Q Consensus 195 ~r~~~~d~ll~~l~~l~~~~~---~~~iil~SATl~~~--~~~-~~~~~~~~i~v~g~---~~~v~~~y~~~~~~~~~~~ 265 (573)
. +....+...++.+....+ ..+.+++|||++.. .+. .++.++..+.+... ...+.+.+......++..
T Consensus 168 ~--l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~- 244 (423)
T PRK04837 168 R--MFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMR- 244 (423)
T ss_pred H--HhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHH-
Confidence 5 333334444555554433 45679999999643 333 44544444444322 123333333333333332
Q ss_pred HHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCC
Q 008221 266 AIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPG 345 (573)
Q Consensus 266 ~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~ 345 (573)
.+..+......+++|||++++..++.+++.|... ++.+..+||++++++|.++++.|+.|.
T Consensus 245 ---~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~v~~lhg~~~~~~R~~~l~~F~~g~------- 305 (423)
T PRK04837 245 ---LLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD---------GHRVGLLTGDVAQKKRLRILEEFTRGD------- 305 (423)
T ss_pred ---HHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC---------CCcEEEecCCCChhHHHHHHHHHHcCC-------
Confidence 3333333445678999999999999999999764 788999999999999999999999998
Q ss_pred ceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 346 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 346 ~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
.+||||||+++||||||+|++|||+|+ |.+.++|+||+|||||. +.|.|+.|+++++.
T Consensus 306 ~~vLVaTdv~~rGiDip~v~~VI~~d~------------------P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 306 LDILVATDVAARGLHIPAVTHVFNYDL------------------PDDCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred CcEEEEechhhcCCCccccCEEEEeCC------------------CCchhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 899999999999999999999999999 99999999999999999 89999999998764
No 28
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.6e-41 Score=341.83 Aligned_cols=340 Identities=16% Similarity=0.171 Sum_probs=260.5
Q ss_pred cCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccC---CChhhcCceEE
Q 008221 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI---ETPDRRRKMMI 119 (573)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~---~~~~~~~~~~i 119 (573)
...|++..+|+..+++++.+|+..++++|+..|+.+..|+++++.+.||||||.+|..+.++.... ........+++
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 456889999999999999999999999999999999999999999999999999998666554321 11223345677
Q ss_pred EEecCcccccccHHHHHHHhh-hhcccchhceeeeecccccc--cccccccCHHHHHHHHhccc--ccCCCcEEEEeCCC
Q 008221 120 ACTQPRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFEDCSSA--RTVLKYLTDGMLLREAMTDP--LLERYKVIVLDEAH 194 (573)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~~~~~--~~~i~~lT~G~l~r~~~~~~--ll~~~~~lILDEa~ 194 (573)
.||++++.|+..+++.+.+.. +..++..+|...+....... ...+.+.|||++++++.... +..+.+++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 888888888888888887766 55666666644322211111 45677889999999998754 36677999999998
Q ss_pred cCcccHHHHHHHHHHHHHhCC-CcEEEEecccccH--HHHHchh-CC-CCeeeecCc----c-cCCcccccCCCchhHHH
Q 008221 195 ERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLEA--EKFQGYF-YG-APLMKVPGR----L-HPVEIFYTQEPERDYLE 264 (573)
Q Consensus 195 ~r~~~~d~ll~~l~~l~~~~~-~~~iil~SATl~~--~~~~~~~-~~-~~~i~v~g~----~-~~v~~~y~~~~~~~~~~ 264 (573)
. +....|.+-++++.+..| .+|.++||||++. +.++... .. +..+.+.+. + ..+++-|...+....+.
T Consensus 241 r--lLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 241 R--LLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred h--hhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 4 444445555555555444 7899999999964 4555432 22 333333221 1 24677777766655443
Q ss_pred HHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCC
Q 008221 265 AAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPP 344 (573)
Q Consensus 265 ~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~ 344 (573)
.++..+.. ......|+|||+|+..+..+++.|... .+.|..+||+++|..|..++..|....
T Consensus 319 ll~~~LKk---~~~~~KiiVF~sT~~~vk~~~~lL~~~---------dlpv~eiHgk~~Q~kRT~~~~~F~kae------ 380 (543)
T KOG0342|consen 319 LLYTFLKK---NIKRYKIIVFFSTCMSVKFHAELLNYI---------DLPVLEIHGKQKQNKRTSTFFEFCKAE------ 380 (543)
T ss_pred HHHHHHHH---hcCCceEEEEechhhHHHHHHHHHhhc---------CCchhhhhcCCcccccchHHHHHhhcc------
Confidence 33333222 122268999999999999999999864 789999999999999999999999888
Q ss_pred CceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 345 GRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 345 ~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
.-|||||||||||+|+|+|++||++|. |.+.++|+||+|||||. ..|.++-+..+.+.
T Consensus 381 -sgIL~cTDVaARGlD~P~V~~VvQ~~~------------------P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 381 -SGILVCTDVAARGLDIPDVDWVVQYDP------------------PSDPEQYIHRVGRTAREGKEGKALLLLAPWEL 439 (543)
T ss_pred -cceEEecchhhccCCCCCceEEEEeCC------------------CCCHHHHHHHhccccccCCCceEEEEeChhHH
Confidence 899999999999999999999999999 99999999999999999 78999998887664
No 29
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.9e-41 Score=367.49 Aligned_cols=347 Identities=14% Similarity=0.116 Sum_probs=255.9
Q ss_pred CCccccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccC------CCh
Q 008221 38 NNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI------ETP 111 (573)
Q Consensus 38 ~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~------~~~ 111 (573)
....++..|+++++++.+++.+...++..++++|.++++.+..|+++++++|||||||.++..+++..... ...
T Consensus 115 ~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~ 194 (518)
T PLN00206 115 AVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQ 194 (518)
T ss_pred CCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccccccc
Confidence 33466788999999999999999999999999999999999999999999999999999888776643210 111
Q ss_pred hhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeeccc--ccccccccccCHHHHHHHHhcccc-cCCCcEE
Q 008221 112 DRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVI 188 (573)
Q Consensus 112 ~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~l 188 (573)
.....++++|++++..|....++.+....+......+|........ ......+.+.|||++..++....+ +.++++|
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~l 274 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVL 274 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEE
Confidence 2234677778877776665666555544433332233322111110 112346788999999988876654 8999999
Q ss_pred EEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH--HHHHchhCCCCeeeecCc----ccCCcccccCCCchhH
Q 008221 189 VLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQGYFYGAPLMKVPGR----LHPVEIFYTQEPERDY 262 (573)
Q Consensus 189 ILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~--~~~~~~~~~~~~i~v~g~----~~~v~~~y~~~~~~~~ 262 (573)
|+||||. +....+...+..+....++.+++++|||+.. +.++..+...++....+. ...+++.+......++
T Consensus 275 ViDEad~--ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k 352 (518)
T PLN00206 275 VLDEVDC--MLERGFRDQVMQIFQALSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQK 352 (518)
T ss_pred EeecHHH--HhhcchHHHHHHHHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhH
Confidence 9999995 3333455555566555568899999999964 456666655444332222 1224444444443443
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCC
Q 008221 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGG 342 (573)
Q Consensus 263 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~ 342 (573)
...+...+... ....+++|||++++..++.+++.|... .++.+..+||++++.+|..+++.|+.|.
T Consensus 353 ~~~l~~~l~~~--~~~~~~~iVFv~s~~~a~~l~~~L~~~--------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~---- 418 (518)
T PLN00206 353 KQKLFDILKSK--QHFKPPAVVFVSSRLGADLLANAITVV--------TGLKALSIHGEKSMKERREVMKSFLVGE---- 418 (518)
T ss_pred HHHHHHHHHhh--cccCCCEEEEcCCchhHHHHHHHHhhc--------cCcceEEeeCCCCHHHHHHHHHHHHCCC----
Confidence 33333332211 122457999999999999999988642 2688999999999999999999999998
Q ss_pred CCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 343 PPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 343 ~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
.+||||||+++||||||+|++||++|+ |.|.++|+||+|||||. .+|.|+.|++.++.
T Consensus 419 ---~~ILVaTdvl~rGiDip~v~~VI~~d~------------------P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 419 ---VPVIVATGVLGRGVDLLRVRQVIIFDM------------------PNTIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred ---CCEEEEecHhhccCCcccCCEEEEeCC------------------CCCHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 899999999999999999999999999 99999999999999999 78999999998765
No 30
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-40 Score=364.39 Aligned_cols=337 Identities=17% Similarity=0.190 Sum_probs=250.8
Q ss_pred ccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccC------CChhhcCceE
Q 008221 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI------ETPDRRRKMM 118 (573)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~------~~~~~~~~~~ 118 (573)
.|+++++++.+++.|.+.++..++++|.++|+.+.+|+++++++|||||||..+..++++.... ......+.++
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLI 89 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALI 89 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 5999999999999999999999999999999999999999999999999999988776653311 0111235677
Q ss_pred EEEecCcccccccHHHHHHHhhhhcccchhceeeeecc--cccccccccccCHHHHHHHHhccc-c-cCCCcEEEEeCCC
Q 008221 119 IACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDP-L-LERYKVIVLDEAH 194 (573)
Q Consensus 119 i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~-l-l~~~~~lILDEa~ 194 (573)
++|++++..+....+..+....+..+...+|....... .......|.+.|+|++.+++.... + +.++++||+||+|
T Consensus 90 l~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh 169 (572)
T PRK04537 90 LAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169 (572)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH
Confidence 88888887777666666655555444444432111000 011234688999999999876543 3 7889999999999
Q ss_pred cCcccHHHHHHHHHHHHHhCC---CcEEEEecccccHH--HH-HchhCCCCeeeecCcc---cCCcccccCCCchhHHHH
Q 008221 195 ERTLATDVLFGLLKEVLKNRP---DLKLVVMSATLEAE--KF-QGYFYGAPLMKVPGRL---HPVEIFYTQEPERDYLEA 265 (573)
Q Consensus 195 ~r~~~~d~ll~~l~~l~~~~~---~~~iil~SATl~~~--~~-~~~~~~~~~i~v~g~~---~~v~~~y~~~~~~~~~~~ 265 (573)
. +....+...+..+....+ +.++++||||+... .+ ..++.++..+.+.... ..+.+.+......++..
T Consensus 170 ~--lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~- 246 (572)
T PRK04537 170 R--MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQT- 246 (572)
T ss_pred H--HhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHH-
Confidence 5 333334444444444333 67999999999643 23 3444444344333221 22344444333333333
Q ss_pred HHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCC
Q 008221 266 AIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPG 345 (573)
Q Consensus 266 ~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~ 345 (573)
.+..+.......++|||++++..++.+++.|... ++.+..+||+|++.+|.++++.|++|.
T Consensus 247 ---~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~---------g~~v~~lhg~l~~~eR~~il~~Fr~G~------- 307 (572)
T PRK04537 247 ---LLLGLLSRSEGARTMVFVNTKAFVERVARTLERH---------GYRVGVLSGDVPQKKRESLLNRFQKGQ------- 307 (572)
T ss_pred ---HHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHHcCC-------
Confidence 3333444455678999999999999999999764 788999999999999999999999998
Q ss_pred ceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 346 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 346 ~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
.+||||||++++|||||+|++||||++ |.+.++|+||+|||||. ..|.|+.|+++.+.
T Consensus 308 ~~VLVaTdv~arGIDip~V~~VInyd~------------------P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 308 LEILVATDVAARGLHIDGVKYVYNYDL------------------PFDAEDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred CeEEEEehhhhcCCCccCCCEEEEcCC------------------CCCHHHHhhhhcccccCCCCceEEEEecHHHH
Confidence 899999999999999999999999999 99999999999999999 88999999987654
No 31
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=9.7e-41 Score=358.92 Aligned_cols=337 Identities=15% Similarity=0.170 Sum_probs=248.9
Q ss_pred ccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC-----hhhcCceEE
Q 008221 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-----PDRRRKMMI 119 (573)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~-----~~~~~~~~i 119 (573)
+|+++++++++.+.+.+.++..++++|.++++.+.+|+++++++|||||||.++..++++...... ....+.+++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 589999999999999999999999999999999999999999999999999998877765432111 111245677
Q ss_pred EEecCcccccccHHHHHHHhhhhcccchhceeeeecc--cccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcC
Q 008221 120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHER 196 (573)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r 196 (573)
+|+++++.+.......+....+......+|....... .......|.++|+|+++.++....+ +.++++||+||||.
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~- 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR- 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH-
Confidence 7777776665555555544444333333332110000 0112356889999999998876665 89999999999995
Q ss_pred cccHHHHHHHHHHHHHhC-CCcEEEEecccccH--HHHHc-hhCCCCeeeecCc---ccCCcccccCCCchhHHHHHHHH
Q 008221 197 TLATDVLFGLLKEVLKNR-PDLKLVVMSATLEA--EKFQG-YFYGAPLMKVPGR---LHPVEIFYTQEPERDYLEAAIRT 269 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~~-~~~~iil~SATl~~--~~~~~-~~~~~~~i~v~g~---~~~v~~~y~~~~~~~~~~~~~~~ 269 (573)
+....+...++.+.... +..+++++|||+.. ..+.. ++.++..+.+... ...+.+++.......+. ..
T Consensus 161 -ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~----~~ 235 (456)
T PRK10590 161 -MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKR----EL 235 (456)
T ss_pred -HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHH----HH
Confidence 33333444444444433 36799999999964 34444 4444444444322 12344444433333322 23
Q ss_pred HHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEE
Q 008221 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (573)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (573)
+..+.......++|||++++.+++.+++.|... ++.+..+||++++.+|.++++.|+.|. .+||
T Consensus 236 l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~F~~g~-------~~iL 299 (456)
T PRK10590 236 LSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD---------GIRSAAIHGNKSQGARTRALADFKSGD-------IRVL 299 (456)
T ss_pred HHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC---------CCCEEEEECCCCHHHHHHHHHHHHcCC-------CcEE
Confidence 333334445678999999999999999999764 788999999999999999999999998 8999
Q ss_pred EeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 350 laT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
||||++++|||||+|++||||++ |.+.++|+||+|||||. ..|.|+.|++..+.
T Consensus 300 VaTdv~~rGiDip~v~~VI~~~~------------------P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 300 VATDIAARGLDIEELPHVVNYEL------------------PNVPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred EEccHHhcCCCcccCCEEEEeCC------------------CCCHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 99999999999999999999999 99999999999999999 78999999998765
No 32
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-41 Score=326.52 Aligned_cols=349 Identities=19% Similarity=0.203 Sum_probs=271.4
Q ss_pred ccCCccccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhc--CCEEEEEcCCCCchhhhhhhhhhcCccCCChhh
Q 008221 36 MNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKA--NQVIILVGETGSGKTTQIPQFVLEGVDIETPDR 113 (573)
Q Consensus 36 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~--g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~ 113 (573)
++++-.+..+|++++|.+++++.+..++|-.|+.+|+..+|.+.. .++++..+.+|+|||++|..-++...+. ....
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~-~~~~ 160 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP-DVVV 160 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc-cccC
Confidence 444445678899999999999999999999999999999999865 5788999999999999999888877663 2233
Q ss_pred cCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeeccc---ccccccccccCHHHHHHHHhccc--ccCCCcEE
Q 008221 114 RRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC---SSARTVLKYLTDGMLLREAMTDP--LLERYKVI 188 (573)
Q Consensus 114 ~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~---~~~~~~i~~lT~G~l~r~~~~~~--ll~~~~~l 188 (573)
++.+.++|+++++.+...|.+.+++..+. ...|.++.... ......|...|||...+++..-+ .+...+++
T Consensus 161 PQ~iCLaPtrELA~Q~~eVv~eMGKf~~i----ta~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvf 236 (477)
T KOG0332|consen 161 PQCICLAPTRELAPQTGEVVEEMGKFTEL----TASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred CCceeeCchHHHHHHHHHHHHHhcCceee----eEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEE
Confidence 45677788888888887777666554422 23344443322 22345678899999999998733 38999999
Q ss_pred EEeCCCcCcccHHHHHHHHHHHHHhCC-CcEEEEeccccc--HHHHHchh-CCCCeeeecC---cccCCcccccCCCchh
Q 008221 189 VLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLE--AEKFQGYF-YGAPLMKVPG---RLHPVEIFYTQEPERD 261 (573)
Q Consensus 189 ILDEa~~r~~~~d~ll~~l~~l~~~~~-~~~iil~SATl~--~~~~~~~~-~~~~~i~v~g---~~~~v~~~y~~~~~~~ 261 (573)
|+|||| -++++..+-+.--.+....| +.|+++||||.. ++.|+..+ .++..+.+.. ..++|+++|+.+..++
T Consensus 237 VlDEAD-~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~ 315 (477)
T KOG0332|consen 237 VLDEAD-VMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRD 315 (477)
T ss_pred Eecchh-hhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchh
Confidence 999998 46777666555445544444 899999999995 45666544 4555554443 3578999999987654
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCC
Q 008221 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (573)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (573)
. .+..+..++....-|+.+|||.+++.+.+++..|... +..|..|||+|.-++|..+++.|+.|.
T Consensus 316 ~---K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~---------Gh~V~~l~G~l~~~~R~~ii~~Fr~g~--- 380 (477)
T KOG0332|consen 316 D---KYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE---------GHQVSLLHGDLTVEQRAAIIDRFREGK--- 380 (477)
T ss_pred h---HHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc---------CceeEEeeccchhHHHHHHHHHHhcCc---
Confidence 2 2334444555556789999999999999999999876 889999999999999999999999999
Q ss_pred CCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhh
Q 008221 342 GPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (573)
Q Consensus 342 ~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (573)
.||||+|||.+||||++.|..||||++--. |+. --+.++|+||+|||||. +.|.+|.|....+
T Consensus 381 ----~kVLitTnV~ARGiDv~qVs~VvNydlP~~--~~~----------~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 381 ----EKVLITTNVCARGIDVAQVSVVVNYDLPVK--YTG----------EPDYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred ----ceEEEEechhhcccccceEEEEEecCCccc--cCC----------CCCHHHHHHHhcccccccccceEEEeecccC
Confidence 899999999999999999999999999100 111 14679999999999999 8999999987654
Q ss_pred h
Q 008221 421 F 421 (573)
Q Consensus 421 ~ 421 (573)
-
T Consensus 445 s 445 (477)
T KOG0332|consen 445 S 445 (477)
T ss_pred c
Confidence 3
No 33
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.7e-40 Score=354.40 Aligned_cols=338 Identities=17% Similarity=0.216 Sum_probs=251.4
Q ss_pred ccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccC---CChhhcCceEEEE
Q 008221 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI---ETPDRRRKMMIAC 121 (573)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~---~~~~~~~~~~i~~ 121 (573)
+|+++++++.+++.+...++..++++|.++++.+.+|+++++++|||||||+++..+++..... ......+.++++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 5999999999999999999999999999999999999999999999999999877665543210 1111123456666
Q ss_pred ecCcccccccHHHHHHHhhhhcccchhceeeeecc--cccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcc
Q 008221 122 TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTL 198 (573)
Q Consensus 122 t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~ 198 (573)
++++..+....+..++...+..++...|....... ....+..|.+.|+|++.+.+....+ +.++++||+||+|. .+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~-~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADR-ML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHH-Hh
Confidence 66666666666666666555555444442211111 1112346888999999998887776 88999999999994 33
Q ss_pred cHHHHHHHHHHHHHhC-CCcEEEEecccccH---HHHHchhCCCCe-eeecCc---ccCCcccccCCCchhHHHHHHHHH
Q 008221 199 ATDVLFGLLKEVLKNR-PDLKLVVMSATLEA---EKFQGYFYGAPL-MKVPGR---LHPVEIFYTQEPERDYLEAAIRTV 270 (573)
Q Consensus 199 ~~d~ll~~l~~l~~~~-~~~~iil~SATl~~---~~~~~~~~~~~~-i~v~g~---~~~v~~~y~~~~~~~~~~~~~~~l 270 (573)
...+...+..+.... ...++++||||++. ..+...+.+.|+ +.+... ...+.++|...... ......+
T Consensus 161 -~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~---~~k~~~l 236 (434)
T PRK11192 161 -DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDL---EHKTALL 236 (434)
T ss_pred -CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCH---HHHHHHH
Confidence 333444455554433 36799999999963 345555544443 332221 12344444433221 1223344
Q ss_pred HHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEE
Q 008221 271 VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (573)
Q Consensus 271 ~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvll 350 (573)
..+......+++|||++++++++.+++.|... ++.+..+||+|++.+|..+++.|+.|. .+|||
T Consensus 237 ~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~l~g~~~~~~R~~~l~~f~~G~-------~~vLV 300 (434)
T PRK11192 237 CHLLKQPEVTRSIVFVRTRERVHELAGWLRKA---------GINCCYLEGEMVQAKRNEAIKRLTDGR-------VNVLV 300 (434)
T ss_pred HHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHhCCC-------CcEEE
Confidence 44555456688999999999999999999764 788999999999999999999999998 89999
Q ss_pred eecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 351 aT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|||++++|||||+|++|||+++ |.|.++|+||+|||||. ..|.|+.|++.+++
T Consensus 301 aTd~~~~GiDip~v~~VI~~d~------------------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~ 354 (434)
T PRK11192 301 ATDVAARGIDIDDVSHVINFDM------------------PRSADTYLHRIGRTGRAGRKGTAISLVEAHDH 354 (434)
T ss_pred EccccccCccCCCCCEEEEECC------------------CCCHHHHhhcccccccCCCCceEEEEecHHHH
Confidence 9999999999999999999999 99999999999999999 78999999998776
No 34
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.4e-39 Score=350.25 Aligned_cols=340 Identities=18% Similarity=0.210 Sum_probs=251.1
Q ss_pred ccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC------hhhcC
Q 008221 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET------PDRRR 115 (573)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~------~~~~~ 115 (573)
....|.++++++.+.+.+.+.|+..++++|.++++.+.+|+++++.++||||||+.+..++++...... ....+
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 345789999999999999999999999999999999999999999999999999998877665432110 01234
Q ss_pred ceEEEEecCcccccccHHHHHHHhhhhcccchhceeee---ecccccccccccccCHHHHHHHHhccc-ccCCCcEEEEe
Q 008221 116 KMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIR---FEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLD 191 (573)
Q Consensus 116 ~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~---~~~~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lILD 191 (573)
.++++|++++..+....++.+....+..+...+|.... ..........|.+.|+|+++.+..... .+.+.++||+|
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 67788888887777666666655555444444442110 011112234688899999988766544 48999999999
Q ss_pred CCCcCcccHHHHHHHHHHHHHhCC---CcEEEEecccccH--HHHHchhC-CCCeeeecCcc---cCCcccccCCCchhH
Q 008221 192 EAHERTLATDVLFGLLKEVLKNRP---DLKLVVMSATLEA--EKFQGYFY-GAPLMKVPGRL---HPVEIFYTQEPERDY 262 (573)
Q Consensus 192 Ea~~r~~~~d~ll~~l~~l~~~~~---~~~iil~SATl~~--~~~~~~~~-~~~~i~v~g~~---~~v~~~y~~~~~~~~ 262 (573)
|+|. +....+...++.+....+ +.+++++|||+.. ..+.+.+. ++..+.+.... ..+++++......++
T Consensus 245 Eah~--l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k 322 (475)
T PRK01297 245 EADR--MLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDK 322 (475)
T ss_pred hHHH--HHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhH
Confidence 9995 333334444555554332 5799999999854 33444443 43333332221 223343333333333
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCC
Q 008221 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGG 342 (573)
Q Consensus 263 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~ 342 (573)
.. .+..+......+++|||++++.+++.+++.|... ++.+..+||++++++|.++++.|+.|.
T Consensus 323 ~~----~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~~~~~~Fr~G~---- 385 (475)
T PRK01297 323 YK----LLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD---------GINAAQLSGDVPQHKRIKTLEGFREGK---- 385 (475)
T ss_pred HH----HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHhCCC----
Confidence 22 3333334445578999999999999999999764 678999999999999999999999998
Q ss_pred CCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 343 PPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 343 ~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
.+||||||++++|||||+|++||++|+ |.|.++|+||+|||||. +.|.++.|+++++.
T Consensus 386 ---~~vLvaT~~l~~GIDi~~v~~VI~~~~------------------P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~ 444 (475)
T PRK01297 386 ---IRVLVATDVAGRGIHIDGISHVINFTL------------------PEDPDDYVHRIGRTGRAGASGVSISFAGEDDA 444 (475)
T ss_pred ---CcEEEEccccccCCcccCCCEEEEeCC------------------CCCHHHHHHhhCccCCCCCCceEEEEecHHHH
Confidence 899999999999999999999999999 99999999999999999 78999999997754
No 35
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-38 Score=357.55 Aligned_cols=439 Identities=18% Similarity=0.229 Sum_probs=282.8
Q ss_pred ccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecC
Q 008221 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQP 124 (573)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p 124 (573)
.|+++++++++++.+..+++. ++++|.++++.+.+|+++++++|||||||+++..++++... . ..+.+.++|++.
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~-~---~~k~v~i~P~ra 76 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL-A---GLKSIYIVPLRS 76 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH-h---CCcEEEEechHH
Confidence 477889999999999888876 89999999999999999999999999999988776665332 1 123344554443
Q ss_pred cccccccHHHHHHH--hhhhcccchhceeeeecccccccccccccCHHHHHHHHhccc-ccCCCcEEEEeCCCcCcc-cH
Q 008221 125 RRVAAMSVSRRVAE--EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTL-AT 200 (573)
Q Consensus 125 ~~~~~~~v~~~v~~--~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lILDEa~~r~~-~~ 200 (573)
+ +...++.+.. ..+..++..+|.... .........+.++|++++..++.... .+.+++++|+||+|+... ..
T Consensus 77 L---a~q~~~~~~~l~~~g~~v~~~~G~~~~-~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~r 152 (674)
T PRK01172 77 L---AMEKYEELSRLRSLGMRVKISIGDYDD-PPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDR 152 (674)
T ss_pred H---HHHHHHHHHHHhhcCCeEEEEeCCCCC-ChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCc
Confidence 3 3334444432 122222222221100 00011235678899998877665544 388999999999996321 11
Q ss_pred H-HHHHHHHHHHHhCCCcEEEEecccc-cHHHHHchhCCCCeeeecCcccCCccc--ccC-----CCchhHHHHHHHHHH
Q 008221 201 D-VLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEIF--YTQ-----EPERDYLEAAIRTVV 271 (573)
Q Consensus 201 d-~ll~~l~~l~~~~~~~~iil~SATl-~~~~~~~~~~~~~~i~v~g~~~~v~~~--y~~-----~~~~~~~~~~~~~l~ 271 (573)
. .+..++..+....++.++|++|||+ +...+++|++ ++.+....+..|++.. |.. ....... .....+.
T Consensus 153 g~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~-~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~-~~~~~i~ 230 (674)
T PRK01172 153 GPTLETVLSSARYVNPDARILALSATVSNANELAQWLN-ASLIKSNFRPVPLKLGILYRKRLILDGYERSQV-DINSLIK 230 (674)
T ss_pred cHHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhC-CCccCCCCCCCCeEEEEEecCeeeecccccccc-cHHHHHH
Confidence 1 2333344444344588999999999 5777888775 3344444444444321 111 1111110 0111222
Q ss_pred HHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCC----------------CCCeEEEEecCCCCHHHHhhhcCCCC
Q 008221 272 QIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ----------------VGPVKVVPLYSTLPPAMQQKIFEPAP 335 (573)
Q Consensus 272 ~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~----------------~~~~~v~~lh~~l~~~~r~~~~~~~~ 335 (573)
... ...+++|||+|++.+++.++..|.+........ .-...+..+||+|++++|..+++.|+
T Consensus 231 ~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~ 308 (674)
T PRK01172 231 ETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFR 308 (674)
T ss_pred HHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHH
Confidence 211 356799999999999999999997653221100 00123778999999999999999999
Q ss_pred CCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCC---CCeE
Q 008221 336 PPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKC 412 (573)
Q Consensus 336 ~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~---~G~~ 412 (573)
+|. .+||+||+++++|+|+|+..+||+ |. ..|+.. ...|+|..+|.||+|||||.+ .|.+
T Consensus 309 ~g~-------i~VLvaT~~la~Gvnipa~~VII~-~~---~~~~~~------~~~~~s~~~~~Qm~GRAGR~g~d~~g~~ 371 (674)
T PRK01172 309 NRY-------IKVIVATPTLAAGVNLPARLVIVR-DI---TRYGNG------GIRYLSNMEIKQMIGRAGRPGYDQYGIG 371 (674)
T ss_pred cCC-------CeEEEecchhhccCCCcceEEEEc-Cc---eEeCCC------CceeCCHHHHHHHhhcCCCCCCCCcceE
Confidence 998 999999999999999999887775 32 334332 123899999999999999984 6776
Q ss_pred Eecc-chhhh---hhhcCCCChh--------hhhccCchhHHHHHHHcCCCccccc---cCC--CCCc---HHHHHHHHH
Q 008221 413 FRLY-TEKSF---NNDLQPQTYP--------EILRSNLANTVLTLKKLGIDDLVHF---DFM--DPPA---PETLMRALE 472 (573)
Q Consensus 413 ~~l~-t~~~~---~~~~~~~~~p--------ei~r~~l~~~~L~~k~~~~~~~~~~---~~~--~pP~---~~~~~~a~~ 472 (573)
+.+. +.+++ ...+...+.| ++.+.++...+......+.+++..| .|+ ++++ .+.++.|++
T Consensus 372 ~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~ 451 (674)
T PRK01172 372 YIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLK 451 (674)
T ss_pred EEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHH
Confidence 6653 32222 2233222222 2222222222222221222344433 333 4332 567999999
Q ss_pred HHHHcCCccCCC--CcChhhhhhhcCCCChhhhhhhhhCCCCC
Q 008221 473 VLNYLGALDDDG--NLTEMGEKMSEFPLDPQMSKMLVESPKYN 513 (573)
Q Consensus 473 ~L~~lgald~~~--~lT~lG~~~~~lp~~p~~~~~l~~~~~~~ 513 (573)
.|.+.|+|+.++ .+|++|+.++.+|++|..++.+..+..-.
T Consensus 452 ~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~ 494 (674)
T PRK01172 452 FLKENGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFDHD 494 (674)
T ss_pred HHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhhcc
Confidence 999999998654 57999999999999999999998876543
No 36
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-40 Score=330.25 Aligned_cols=345 Identities=19% Similarity=0.257 Sum_probs=278.3
Q ss_pred CccccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcC----ccCCChhhc
Q 008221 39 NNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEG----VDIETPDRR 114 (573)
Q Consensus 39 ~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~----~~~~~~~~~ 114 (573)
...++..|+.+++++.++..+++..+..+|++|.+++|....|.+|+.++.||||||.+|..+.+.. ..+.....+
T Consensus 218 ~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gP 297 (731)
T KOG0339|consen 218 PPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGP 297 (731)
T ss_pred CCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCC
Confidence 3456788999999999999999999999999999999999999999999999999999998665433 222223344
Q ss_pred CceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeeccccc--ccccccccCHHHHHHHHhcccc-cCCCcEEEEe
Q 008221 115 RKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS--ARTVLKYLTDGMLLREAMTDPL-LERYKVIVLD 191 (573)
Q Consensus 115 ~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~--~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILD 191 (573)
-.++++|+++++.|+.+.++.+.+..+..+....|.....++... ...-++++|||+++.+..-.+. +.++++||||
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~D 377 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLD 377 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEe
Confidence 567889999999999999999999888887777776554443322 2456788999999999887776 9999999999
Q ss_pred CCCcCcccHHHHHHHHHHHHH-hCCCcEEEEeccccc--HHHHHchhCCCCeeeecCc----ccCCcccccCCC-chhHH
Q 008221 192 EAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE--AEKFQGYFYGAPLMKVPGR----LHPVEIFYTQEP-ERDYL 263 (573)
Q Consensus 192 Ea~~r~~~~d~ll~~l~~l~~-~~~~~~iil~SATl~--~~~~~~~~~~~~~i~v~g~----~~~v~~~y~~~~-~~~~~ 263 (573)
|+|. +....+...++.+.. -+|++|+++||||+. ++.+++-+...|+-.+.|. ...|++....++ ...++
T Consensus 378 Eadr--mfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl 455 (731)
T KOG0339|consen 378 EADR--MFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKL 455 (731)
T ss_pred chhh--hhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHH
Confidence 9984 555566677777764 468999999999996 4666665555565555443 234444433333 33444
Q ss_pred HHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCC
Q 008221 264 EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 343 (573)
Q Consensus 264 ~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~ 343 (573)
..+++. +......|++|+|+.-+.+.++++..|.-. ++.+..|||++.|.+|.+++..|+.+.
T Consensus 456 ~wl~~~---L~~f~S~gkvlifVTKk~~~e~i~a~Lklk---------~~~v~llhgdkdqa~rn~~ls~fKkk~----- 518 (731)
T KOG0339|consen 456 NWLLRH---LVEFSSEGKVLIFVTKKADAEEIAANLKLK---------GFNVSLLHGDKDQAERNEVLSKFKKKR----- 518 (731)
T ss_pred HHHHHH---hhhhccCCcEEEEEeccCCHHHHHHHhccc---------cceeeeecCchhhHHHHHHHHHHhhcC-----
Confidence 444333 334456799999999999999999988643 899999999999999999999999887
Q ss_pred CCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhhh
Q 008221 344 PGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (573)
Q Consensus 344 ~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~ 422 (573)
..|++|||+|+||+||++++-||||++ --+.+.|.||+||+||+ ..|++|+|+|+.+-+
T Consensus 519 --~~VlvatDvaargldI~~ikTVvnyD~------------------ardIdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 519 --KPVLVATDVAARGLDIPSIKTVVNYDF------------------ARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred --CceEEEeeHhhcCCCccccceeecccc------------------cchhHHHHHHhhhcccccccceeeEEechhhHH
Confidence 799999999999999999999999999 78999999999999999 779999999998863
No 37
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=6.1e-39 Score=340.83 Aligned_cols=339 Identities=16% Similarity=0.237 Sum_probs=246.4
Q ss_pred cCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEe
Q 008221 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (573)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t 122 (573)
..+|+++++++.+.+.+...++..++++|.++++.+.+|+++++.||||||||+++..+++..... .....+.++++|+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~-~~~~~~~lil~Pt 105 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY-DLNACQALILAPT 105 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC-CCCCceEEEECCC
Confidence 467999999999999999999999999999999999999999999999999999887766654331 1112345666677
Q ss_pred cCcccccccHHHHHHHhhhhcccchhceeeeeccc--ccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCccc
Q 008221 123 QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (573)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~ 199 (573)
+++..+.......+...........+|.....+.. ......|.+.|+|.+...+..+.+ +.+++++|+||+|. +.
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~--~~ 183 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE--ML 183 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH--HH
Confidence 66655544444444433333332333322111111 111246888999999988876654 89999999999995 33
Q ss_pred HHHHHHHHHHHHHh-CCCcEEEEecccccHH--HHH-chhCCCCeeeecCc---ccCCcccccCCCchhHHHHHHHHHHH
Q 008221 200 TDVLFGLLKEVLKN-RPDLKLVVMSATLEAE--KFQ-GYFYGAPLMKVPGR---LHPVEIFYTQEPERDYLEAAIRTVVQ 272 (573)
Q Consensus 200 ~d~ll~~l~~l~~~-~~~~~iil~SATl~~~--~~~-~~~~~~~~i~v~g~---~~~v~~~y~~~~~~~~~~~~~~~l~~ 272 (573)
...+...+.++.+. .++.+++++|||++.+ .+. .++.++..+.+... ...+.++|......++. ...+..
T Consensus 184 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~ 260 (401)
T PTZ00424 184 SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWK---FDTLCD 260 (401)
T ss_pred hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHH---HHHHHH
Confidence 33333333344333 3478999999999643 233 34433333333321 22345555544433322 223333
Q ss_pred HhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEee
Q 008221 273 IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST 352 (573)
Q Consensus 273 i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT 352 (573)
+.......++|||++++..++.+++.|... ++.+..+||++++.+|..+++.|+.|. .+|||||
T Consensus 261 ~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~R~~i~~~f~~g~-------~~vLvaT 324 (401)
T PTZ00424 261 LYETLTITQAIIYCNTRRKVDYLTKKMHER---------DFTVSCMHGDMDQKDRDLIMREFRSGS-------TRVLITT 324 (401)
T ss_pred HHHhcCCCeEEEEecCcHHHHHHHHHHHHC---------CCcEEEEeCCCCHHHHHHHHHHHHcCC-------CCEEEEc
Confidence 444445568999999999999999999763 678999999999999999999999998 8999999
Q ss_pred cccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 353 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 353 ~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
+++++|||+|+|++||++|+ |.|..+|.||+|||||. ++|.||.|+++++.
T Consensus 325 ~~l~~GiDip~v~~VI~~~~------------------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~ 376 (401)
T PTZ00424 325 DLLARGIDVQQVSLVINYDL------------------PASPENYIHRIGRSGRFGRKGVAINFVTPDDI 376 (401)
T ss_pred ccccCCcCcccCCEEEEECC------------------CCCHHHEeecccccccCCCCceEEEEEcHHHH
Confidence 99999999999999999998 99999999999999999 78999999998876
No 38
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-39 Score=314.85 Aligned_cols=343 Identities=18% Similarity=0.204 Sum_probs=259.6
Q ss_pred ccccCccCCC-CCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCC-----Chhh
Q 008221 40 NSLINRWNGK-PYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIE-----TPDR 113 (573)
Q Consensus 40 ~~~~~~f~~~-~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~-----~~~~ 113 (573)
+.+..+|++. .-.+++++.+.+.|+..|+|+|.+.-|.+.+|.+++.++.||+|||..+..+-+...... ....
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 4456778765 445788999999999999999999999999999999999999999998774433222211 1112
Q ss_pred cCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeecccccc--cccccccCHHHHHHHHhcccc-cCCCcEEEE
Q 008221 114 RRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA--RTVLKYLTDGMLLREAMTDPL-LERYKVIVL 190 (573)
Q Consensus 114 ~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~--~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIL 190 (573)
...+++.|++++++++.-..... ...+....+..|...+-++.... .-.+...|||++.++.+.... +..+.+|||
T Consensus 295 p~~lvl~ptreLalqie~e~~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVl 373 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVL 373 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEe
Confidence 23455566666555532221111 11223333444544443333222 234667899999999998877 999999999
Q ss_pred eCCCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc--HHHHHchhCCCCeeeecCc-----ccCCcccccCCCchhHH
Q 008221 191 DEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFYGAPLMKVPGR-----LHPVEIFYTQEPERDYL 263 (573)
Q Consensus 191 DEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~--~~~~~~~~~~~~~i~v~g~-----~~~v~~~y~~~~~~~~~ 263 (573)
|||| +++++.+--.+-+.++.-+|++++++.|||.+ +..+++-+...|++...|. .+.|+++++...+.+++
T Consensus 374 DEAD-rMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~ 452 (629)
T KOG0336|consen 374 DEAD-RMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL 452 (629)
T ss_pred cchh-hhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH
Confidence 9999 67777776677777777889999999999996 4567765556677777665 35788887666666665
Q ss_pred HHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCC
Q 008221 264 EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 343 (573)
Q Consensus 264 ~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~ 343 (573)
... ..+.. ......++|||+..+.-++.+.+-+.- .++..-.|||+-.|.+|+.+++.|+.|.
T Consensus 453 ~~~-~~f~~--~ms~ndKvIiFv~~K~~AD~LSSd~~l---------~gi~~q~lHG~r~Q~DrE~al~~~ksG~----- 515 (629)
T KOG0336|consen 453 EIV-QFFVA--NMSSNDKVIIFVSRKVMADHLSSDFCL---------KGISSQSLHGNREQSDREMALEDFKSGE----- 515 (629)
T ss_pred HHH-HHHHH--hcCCCceEEEEEechhhhhhccchhhh---------cccchhhccCChhhhhHHHHHHhhhcCc-----
Confidence 432 22222 223456899999999888877666642 4899999999999999999999999999
Q ss_pred CCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 344 PGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 344 ~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
.+||||||+|.||||++||+||+||++ |-..++|+||+||+||+ +.|.++.|++..+.
T Consensus 516 --vrILvaTDlaSRGlDv~DiTHV~NyDF------------------P~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~ 574 (629)
T KOG0336|consen 516 --VRILVATDLASRGLDVPDITHVYNYDF------------------PRNIEEYVHRVGRTGRAGRTGTSISFLTRNDW 574 (629)
T ss_pred --eEEEEEechhhcCCCchhcceeeccCC------------------CccHHHHHHHhcccccCCCCcceEEEEehhhH
Confidence 999999999999999999999999999 99999999999999999 89999999999886
No 39
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-39 Score=332.08 Aligned_cols=344 Identities=15% Similarity=0.147 Sum_probs=265.0
Q ss_pred ccccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC---------
Q 008221 40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET--------- 110 (573)
Q Consensus 40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~--------- 110 (573)
......|.+-.+.+.+...++.+++..++++|+-.|+.|..|.+++.+|+||||||.+|..++++......
T Consensus 70 p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~ 149 (482)
T KOG0335|consen 70 PPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGG 149 (482)
T ss_pred CCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCC
Confidence 34456888888999999999999999999999999999999999999999999999999877654332111
Q ss_pred hhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeecc--cccccccccccCHHHHHHHHhcccc-cCCCcE
Q 008221 111 PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKV 187 (573)
Q Consensus 111 ~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~ 187 (573)
...+..+++.||+++..|...-++.+...........+|......+ .......|.++|+|++..++-...+ |.++++
T Consensus 150 ~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~ 229 (482)
T KOG0335|consen 150 GVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKF 229 (482)
T ss_pred CCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcE
Confidence 1124567889999998888888877765554443333332110011 1123466888999999999888776 999999
Q ss_pred EEEeCCCcCcccHHHHHHHHHHHHHhC-----CCcEEEEecccccHH--HHHchhC-C-CCeee---ecCcccCCccccc
Q 008221 188 IVLDEAHERTLATDVLFGLLKEVLKNR-----PDLKLVVMSATLEAE--KFQGYFY-G-APLMK---VPGRLHPVEIFYT 255 (573)
Q Consensus 188 lILDEa~~r~~~~d~ll~~l~~l~~~~-----~~~~iil~SATl~~~--~~~~~~~-~-~~~i~---v~g~~~~v~~~y~ 255 (573)
+|||||| ++++...|...++.+.... ..+|.+|||||.+.+ .++.+|. + ...+. +.+....+.+...
T Consensus 230 ~vLDEAD-rMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~ 308 (482)
T KOG0335|consen 230 LVLDEAD-RMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKIL 308 (482)
T ss_pred EEecchH-HhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEee
Confidence 9999999 6677566666666665432 278999999999643 3444443 2 22222 2334456777777
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCCC-----CEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhh
Q 008221 256 QEPERDYLEAAIRTVVQIHMCEPSG-----DILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKI 330 (573)
Q Consensus 256 ~~~~~~~~~~~~~~l~~i~~~~~~g-----~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~ 330 (573)
.+.+.++...+++.+.........+ .++||+.+++.+..++..|... ++.+.++||..++.+|.+.
T Consensus 309 ~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~---------~~~~~sIhg~~tq~er~~a 379 (482)
T KOG0335|consen 309 FVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN---------GYPAKSIHGDRTQIEREQA 379 (482)
T ss_pred eecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC---------CCCceeecchhhhhHHHHH
Confidence 7766666665555543322111234 7999999999999999999875 8899999999999999999
Q ss_pred cCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CC
Q 008221 331 FEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QP 409 (573)
Q Consensus 331 ~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~ 409 (573)
++.|+.|+ ..|+||||||+||||||+|+|||||++ |.+..+|+||+|||||+ ..
T Consensus 380 l~~Fr~g~-------~pvlVaT~VaaRGlDi~~V~hVInyDm------------------P~d~d~YvHRIGRTGR~Gn~ 434 (482)
T KOG0335|consen 380 LNDFRNGK-------APVLVATNVAARGLDIPNVKHVINYDM------------------PADIDDYVHRIGRTGRVGNG 434 (482)
T ss_pred HHHhhcCC-------cceEEEehhhhcCCCCCCCceeEEeec------------------CcchhhHHHhccccccCCCC
Confidence 99999999 899999999999999999999999999 99999999999999999 78
Q ss_pred CeEEeccch
Q 008221 410 GKCFRLYTE 418 (573)
Q Consensus 410 G~~~~l~t~ 418 (573)
|.+..|++.
T Consensus 435 G~atsf~n~ 443 (482)
T KOG0335|consen 435 GRATSFFNE 443 (482)
T ss_pred ceeEEEecc
Confidence 999999993
No 40
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-39 Score=329.71 Aligned_cols=343 Identities=20% Similarity=0.215 Sum_probs=246.3
Q ss_pred ccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcC-CEEEEEcCCCCchhhhhhhhhhcCccCC--------C--
Q 008221 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN-QVIILVGETGSGKTTQIPQFVLEGVDIE--------T-- 110 (573)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g-~~v~i~G~tGSGKTT~l~~~ll~~~~~~--------~-- 110 (573)
.+..|.++++|.++++.|+..||..|+++|...||++-.| .+++..++||||||.+|..++++...-. +
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 4567999999999999999999999999999999999888 8999999999999999999988733211 1
Q ss_pred hhhcC--ceEEEEecCcccccccHHHHHHHhhhhcccchhcee-eee-cccccccccccccCHHHHHHHHhcccc----c
Q 008221 111 PDRRR--KMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYS-IRF-EDCSSARTVLKYLTDGMLLREAMTDPL----L 182 (573)
Q Consensus 111 ~~~~~--~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~-~~~-~~~~~~~~~i~~lT~G~l~r~~~~~~l----l 182 (573)
....+ ++++.||++++.|+..-.+.++...+..+...+|.. +.. +........|++.|||+++.++..... +
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~ 338 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNF 338 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhh
Confidence 11223 567778888887777777777777777777777632 111 111223456888999999988866543 7
Q ss_pred CCCcEEEEeCCCcCcccHHHH---HHHHHHHHH--hCCCcEEEEecccccHHHHHchh----C-------CCCe---eee
Q 008221 183 ERYKVIVLDEAHERTLATDVL---FGLLKEVLK--NRPDLKLVVMSATLEAEKFQGYF----Y-------GAPL---MKV 243 (573)
Q Consensus 183 ~~~~~lILDEa~~r~~~~d~l---l~~l~~l~~--~~~~~~iil~SATl~~~~~~~~~----~-------~~~~---i~v 243 (573)
.++++||+||+| |++....| -.+|+.+.. ..+.+|+++||||+........- . +.++ +.-
T Consensus 339 k~vkcLVlDEaD-RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 339 KKVKCLVLDEAD-RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhceEEEEccHH-HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 789999999998 55554433 233444431 22478999999998642211000 0 0000 000
Q ss_pred cCc-ccCCcccccCCCchhHHHHHHHHHHHH-----------hhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCC
Q 008221 244 PGR-LHPVEIFYTQEPERDYLEAAIRTVVQI-----------HMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVG 311 (573)
Q Consensus 244 ~g~-~~~v~~~y~~~~~~~~~~~~~~~l~~i-----------~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~ 311 (573)
-|- ..| ++.-+. +...-...+.+.+++. ....-+|..|||||+...|..++-.|...
T Consensus 418 ig~~~kp-kiiD~t-~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L--------- 486 (731)
T KOG0347|consen 418 IGFRGKP-KIIDLT-PQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL--------- 486 (731)
T ss_pred hCccCCC-eeEecC-cchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc---------
Confidence 000 001 000000 1111111111111110 11235799999999999999999999765
Q ss_pred CeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeee
Q 008221 312 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 391 (573)
Q Consensus 312 ~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p 391 (573)
++..++||+.|.|.+|.+.+++|++.. .-||||||||+||||||+|.|||+|-. |
T Consensus 487 ~i~p~~LHA~M~QKqRLknLEkF~~~~-------~~VLiaTDVAARGLDIp~V~HVIHYqV------------------P 541 (731)
T KOG0347|consen 487 DIPPLPLHASMIQKQRLKNLEKFKQSP-------SGVLIATDVAARGLDIPGVQHVIHYQV------------------P 541 (731)
T ss_pred CCCCchhhHHHHHHHHHHhHHHHhcCC-------CeEEEeehhhhccCCCCCcceEEEeec------------------C
Confidence 788899999999999999999999877 799999999999999999999999999 9
Q ss_pred ccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 392 ISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 392 ~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
-+.+.|+||+|||+|+ ..|+..-|+.+.+.
T Consensus 542 rtseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 542 RTSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred CccceeEecccccccccCCCeEEEEeChHHh
Confidence 9999999999999999 88999999988764
No 41
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-38 Score=321.38 Aligned_cols=374 Identities=18% Similarity=0.236 Sum_probs=266.1
Q ss_pred cCccCCCCCChHHHHHHHH-hcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCcc-----CCChhhcCc
Q 008221 43 INRWNGKPYSQRYYEILEK-RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVD-----IETPDRRRK 116 (573)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~-~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~-----~~~~~~~~~ 116 (573)
...|..++|++.+.+.|.. +++..++.+|.+.||.|.+|+++.|-++||||||.++..++++... +....+.-.
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~A 214 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYA 214 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceE
Confidence 4568999999999988864 6899999999999999999999999999999999999877765432 112334456
Q ss_pred eEEEEecCcccccccHHHHHHHhhhhcc-cchhceeeeecccccc--cccccccCHHHHHHHHhcccc--cCCCcEEEEe
Q 008221 117 MMIACTQPRRVAAMSVSRRVAEEMDVTI-GEEVGYSIRFEDCSSA--RTVLKYLTDGMLLREAMTDPL--LERYKVIVLD 191 (573)
Q Consensus 117 ~~i~~t~p~~~~~~~v~~~v~~~~~~~~-~~~vg~~~~~~~~~~~--~~~i~~lT~G~l~r~~~~~~l--l~~~~~lILD 191 (573)
++|+||++++.|.+.+++.+.+...+-+ |..+|..-+....... .-.|.+.|||++.+++...+- +++.+.||||
T Consensus 215 LVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlD 294 (708)
T KOG0348|consen 215 LVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLD 294 (708)
T ss_pred EEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEec
Confidence 8899999999998888888776544322 3334433222222122 234567799999999987654 7889999999
Q ss_pred CCCcCcccHHH---HHHHHHHHHH----hC-----C-CcEEEEeccccc--HHHHHchhCCCCe-eee------------
Q 008221 192 EAHERTLATDV---LFGLLKEVLK----NR-----P-DLKLVVMSATLE--AEKFQGYFYGAPL-MKV------------ 243 (573)
Q Consensus 192 Ea~~r~~~~d~---ll~~l~~l~~----~~-----~-~~~iil~SATl~--~~~~~~~~~~~~~-i~v------------ 243 (573)
|+| |.++.++ +-.+++.+-. .. | .++-+|+|||+. +..+++.-...|+ |..
T Consensus 295 EaD-rlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~ 373 (708)
T KOG0348|consen 295 EAD-RLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDK 373 (708)
T ss_pred chh-HHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchh
Confidence 998 3333322 3333333311 11 1 478899999995 4556654332222 220
Q ss_pred ------cC----------cccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhc-
Q 008221 244 ------PG----------RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNM- 306 (573)
Q Consensus 244 ------~g----------~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~- 306 (573)
++ .+....+.|..+|..-.+-++...+......++..+++||+++++.++.-++.+...+...
T Consensus 374 a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~ 453 (708)
T KOG0348|consen 374 AVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHL 453 (708)
T ss_pred hhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccc
Confidence 01 0112345566666655566666667776666777789999999999999999887654320
Q ss_pred ------------CCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCccc
Q 008221 307 ------------GDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAK 374 (573)
Q Consensus 307 ------------~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k 374 (573)
..-.-+.+++.|||+|+|++|..+|+.|.... +-|++|||||+||||+|+|++||.|+.
T Consensus 454 e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~-------~~VLLcTDVAaRGLDlP~V~~vVQYd~-- 524 (708)
T KOG0348|consen 454 EGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSR-------RAVLLCTDVAARGLDLPHVGLVVQYDP-- 524 (708)
T ss_pred ccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcccc-------ceEEEehhhhhccCCCCCcCeEEEeCC--
Confidence 01122567999999999999999999999887 889999999999999999999999887
Q ss_pred ceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccc--hhhhhhhcCCCChhhhhccCchhHHH
Q 008221 375 QKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYT--EKSFNNDLQPQTYPEILRSNLANTVL 443 (573)
Q Consensus 375 ~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t--~~~~~~~~~~~~~pei~r~~l~~~~L 443 (573)
|-+.++|+||+|||.|. +.|.++-|.. +.+|.+.+..+.. -++..++..++.
T Consensus 525 ----------------P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~-~l~q~~~~~~l~ 579 (708)
T KOG0348|consen 525 ----------------PFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHI-MLLQFDMEILLP 579 (708)
T ss_pred ----------------CCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcc-hhhccchhhhhh
Confidence 99999999999999999 7888776654 4556444444432 244444444433
No 42
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2e-39 Score=316.75 Aligned_cols=356 Identities=16% Similarity=0.174 Sum_probs=257.8
Q ss_pred cCCCCCCCcccCCccccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhh---
Q 008221 27 TNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVL--- 103 (573)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll--- 103 (573)
.....+........+++.+|.++.+++.+++.++++|+..|+++|-+-||.+.+|++.+.++-||||||..|..+++
T Consensus 153 Rk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~ 232 (610)
T KOG0341|consen 153 RKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFA 232 (610)
T ss_pred HHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHH
Confidence 33444555555666778999999999999999999999999999999999999999999999999999997764432
Q ss_pred -cCcc---CCChhhcCceEEEEecCcccccccHHHHHHHhhhh------cccchhceeeeecccc--cccccccccCHHH
Q 008221 104 -EGVD---IETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV------TIGEEVGYSIRFEDCS--SARTVLKYLTDGM 171 (573)
Q Consensus 104 -~~~~---~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~------~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~ 171 (573)
+... ......+-+++|+|.++++-+...+.+.+...+.. +.+..+|.....++.. ...-.|.+.|||+
T Consensus 233 LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGR 312 (610)
T KOG0341|consen 233 LEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGR 312 (610)
T ss_pred HHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcch
Confidence 2211 11223445688899999888888777766543321 2223333221111111 1234567889999
Q ss_pred HHHHHhcccc-cCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCC-CcEEEEecccccH--HHHHchhCCCCeeeecCcc
Q 008221 172 LLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLEA--EKFQGYFYGAPLMKVPGRL 247 (573)
Q Consensus 172 l~r~~~~~~l-l~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~-~~~iil~SATl~~--~~~~~~~~~~~~i~v~g~~ 247 (573)
+.+++....+ |.-++++.||||| |++++ .|.+.++.+..... .+|+++|||||+. ..|+.-..--|+..-.|+.
T Consensus 313 L~DmL~KK~~sLd~CRyL~lDEAD-RmiDm-GFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRA 390 (610)
T KOG0341|consen 313 LMDMLAKKIMSLDACRYLTLDEAD-RMIDM-GFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRA 390 (610)
T ss_pred HHHHHHHhhccHHHHHHhhhhhHH-HHhhc-cchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccc
Confidence 9998877666 8889999999998 44444 44555555544322 7899999999975 3455433333443333442
Q ss_pred cCCcccccCCCchhHHHHH--HHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHH
Q 008221 248 HPVEIFYTQEPERDYLEAA--IRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPA 325 (573)
Q Consensus 248 ~~v~~~y~~~~~~~~~~~~--~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~ 325 (573)
-......+. +-+|+..- +-.++.. .+....++|||+-.+.+++.++++|-- .++.++.+||+-+|+
T Consensus 391 GAAsldViQ--evEyVkqEaKiVylLeC-LQKT~PpVLIFaEkK~DVD~IhEYLLl---------KGVEavaIHGGKDQe 458 (610)
T KOG0341|consen 391 GAASLDVIQ--EVEYVKQEAKIVYLLEC-LQKTSPPVLIFAEKKADVDDIHEYLLL---------KGVEAVAIHGGKDQE 458 (610)
T ss_pred cccchhHHH--HHHHHHhhhhhhhHHHH-hccCCCceEEEeccccChHHHHHHHHH---------ccceeEEeecCcchh
Confidence 211111000 11222211 1112222 223455899999999999999999864 389999999999999
Q ss_pred HHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccC
Q 008221 326 MQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAG 405 (573)
Q Consensus 326 ~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaG 405 (573)
+|..+++.|+.|+ ..|+||||||..|+|+|+|.|||||++ |-..++|+||+||||
T Consensus 459 dR~~ai~afr~gk-------KDVLVATDVASKGLDFp~iqHVINyDM------------------P~eIENYVHRIGRTG 513 (610)
T KOG0341|consen 459 DRHYAIEAFRAGK-------KDVLVATDVASKGLDFPDIQHVINYDM------------------PEEIENYVHRIGRTG 513 (610)
T ss_pred HHHHHHHHHhcCC-------CceEEEecchhccCCCccchhhccCCC------------------hHHHHHHHHHhcccC
Confidence 9999999999999 899999999999999999999999999 999999999999999
Q ss_pred CC-CCCeEEeccchhhh
Q 008221 406 RT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 406 R~-~~G~~~~l~t~~~~ 421 (573)
|. +.|.+-+|+++...
T Consensus 514 Rsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 514 RSGKTGIATTFINKNQE 530 (610)
T ss_pred CCCCcceeeeeecccch
Confidence 99 88999999987654
No 43
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.8e-37 Score=348.81 Aligned_cols=437 Identities=20% Similarity=0.261 Sum_probs=289.1
Q ss_pred ccCCCCCChHHHHHHHHhcCCCChHHHHHHHHH-HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEec
Q 008221 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (573)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~-i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (573)
.|+++++++++.+.+..+|+..++++|.++++. +.+|+++++++|||||||..+-.+++.... . ..+.+.++|++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-~---~~kal~i~P~r 77 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-R---GGKALYIVPLR 77 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-c---CCcEEEEeChH
Confidence 478899999999999999999999999999998 889999999999999999998777665432 1 12355666665
Q ss_pred CcccccccHHHHHHHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcc-cccCCCcEEEEeCCCcCc--ccH
Q 008221 124 PRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTD-PLLERYKVIVLDEAHERT--LAT 200 (573)
Q Consensus 124 p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~-~ll~~~~~lILDEa~~r~--~~~ 200 (573)
.+..+.......+.. .+..++...|...... .......|.++|++++..++... .++.+++++|+||+|.-. ...
T Consensus 78 aLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~-~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg 155 (737)
T PRK02362 78 ALASEKFEEFERFEE-LGVRVGISTGDYDSRD-EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRG 155 (737)
T ss_pred HHHHHHHHHHHHhhc-CCCEEEEEeCCcCccc-cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcch
Confidence 554443333332221 2333333333211111 11124568889999987766543 358899999999999521 112
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccc-cHHHHHchhCCCCeeeecCcccCCc--------------ccccCCCchhHHHH
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVE--------------IFYTQEPERDYLEA 265 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl-~~~~~~~~~~~~~~i~v~g~~~~v~--------------~~y~~~~~~~~~~~ 265 (573)
..+..++..+....++.|+|.+|||+ +.+.++++++.. .+....++.++. ......+.. ..
T Consensus 156 ~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~---~~ 231 (737)
T PRK02362 156 PTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAE-LVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK---DD 231 (737)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCC-cccCCCCCCCCeeeEecCCeeccccccccCCCccc---hH
Confidence 22333445554445689999999999 466777776532 111111111111 111111111 12
Q ss_pred HHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhc----------------CCCCC-----------CeEEEEe
Q 008221 266 AIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNM----------------GDQVG-----------PVKVVPL 318 (573)
Q Consensus 266 ~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~----------------~~~~~-----------~~~v~~l 318 (573)
....+.... ...+++|||++++.+++.++..|....... ....+ ...+..+
T Consensus 232 ~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~h 309 (737)
T PRK02362 232 TLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFH 309 (737)
T ss_pred HHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEee
Confidence 223333332 256799999999999999999887643210 00000 1357889
Q ss_pred cCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHH
Q 008221 319 YSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAH 398 (573)
Q Consensus 319 h~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~ 398 (573)
||+|++.+|..+.+.|++|. .+||+||+++++|+|+|++++||+. ...||+..+. .|++..+|.
T Consensus 310 Hagl~~~eR~~ve~~Fr~G~-------i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~ 373 (737)
T PRK02362 310 HAGLSREHRELVEDAFRDRL-------IKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYH 373 (737)
T ss_pred cCCCCHHHHHHHHHHHHcCC-------CeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHH
Confidence 99999999999999999998 9999999999999999999999964 3467765432 399999999
Q ss_pred HhccccCCCC---CCeEEeccchhh-----hhhhcCCCChhhhhcc------CchhHHHHHHHcCC----Cccccc---c
Q 008221 399 QRSGRAGRTQ---PGKCFRLYTEKS-----FNNDLQPQTYPEILRS------NLANTVLTLKKLGI----DDLVHF---D 457 (573)
Q Consensus 399 qR~GRaGR~~---~G~~~~l~t~~~-----~~~~~~~~~~pei~r~------~l~~~~L~~k~~~~----~~~~~~---~ 457 (573)
||+|||||.+ .|.||.+....+ |+..+.. .|+-..+ .|...++...+.|. .++..| .
T Consensus 374 Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~--~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~T 451 (737)
T PRK02362 374 QMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWA--DPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEAT 451 (737)
T ss_pred HHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhC--CCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhC
Confidence 9999999983 499999986531 2222221 1221122 23334444444432 222222 2
Q ss_pred CCCCC------cHHHHHHHHHHHHHcCCccCCCC---cChhhhhhhcCCCChhhhhhhhhCCC
Q 008221 458 FMDPP------APETLMRALEVLNYLGALDDDGN---LTEMGEKMSEFPLDPQMSKMLVESPK 511 (573)
Q Consensus 458 ~~~pP------~~~~~~~a~~~L~~lgald~~~~---lT~lG~~~~~lp~~p~~~~~l~~~~~ 511 (573)
|...+ ..+.++.+++.|.+.|+|+.+++ .|++|+.++.++++|..+..+..+..
T Consensus 452 f~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 514 (737)
T PRK02362 452 FYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLE 514 (737)
T ss_pred hHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhh
Confidence 32222 23568999999999999987765 89999999999999999999987754
No 44
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.7e-36 Score=337.70 Aligned_cols=338 Identities=19% Similarity=0.204 Sum_probs=232.1
Q ss_pred CCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCccccc
Q 008221 50 PYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAA 129 (573)
Q Consensus 50 ~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~ 129 (573)
.+++++.+.++++++..+|++|.+.++.+.+|+++++.+|||||||.++..++++... .. ...+.+.++|++++..+.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~-~~-~~~~aL~l~PtraLa~q~ 97 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALA-DD-PRATALYLAPTKALAADQ 97 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHh-hC-CCcEEEEEcChHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999988876543 11 123456677777666555
Q ss_pred ccHHHHHHHhhhhcccchhceeeeecc-cccccccccccCHHHHHHHHhc-----ccccCCCcEEEEeCCCcCcc----c
Q 008221 130 MSVSRRVAEEMDVTIGEEVGYSIRFED-CSSARTVLKYLTDGMLLREAMT-----DPLLERYKVIVLDEAHERTL----A 199 (573)
Q Consensus 130 ~~v~~~v~~~~~~~~~~~vg~~~~~~~-~~~~~~~i~~lT~G~l~r~~~~-----~~ll~~~~~lILDEa~~r~~----~ 199 (573)
....+.+. ..+..+....|....... .......|.+.||+++...++. ..++++.+++|+||+|.-.- .
T Consensus 98 ~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~ 176 (742)
T TIGR03817 98 LRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSH 176 (742)
T ss_pred HHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHH
Confidence 55544443 112222222222111000 0112346778899998754432 23588999999999995211 1
Q ss_pred HHHHHHHHHHHHHhC-CCcEEEEeccccc-HHHHHchhCCCCeeeecCc--ccC-CcccccCCC------------chhH
Q 008221 200 TDVLFGLLKEVLKNR-PDLKLVVMSATLE-AEKFQGYFYGAPLMKVPGR--LHP-VEIFYTQEP------------ERDY 262 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~-~~~~iil~SATl~-~~~~~~~~~~~~~i~v~g~--~~~-v~~~y~~~~------------~~~~ 262 (573)
...++..++.+.... .+.|++++|||+. ...+++.+.+.|+..+... ... .+..+...+ ....
T Consensus 177 ~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~ 256 (742)
T TIGR03817 177 VALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSA 256 (742)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccch
Confidence 122333344444332 2679999999994 4455655555555544322 111 111111111 0111
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCC
Q 008221 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGG 342 (573)
Q Consensus 263 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~ 342 (573)
.......+..+.. ...++|||++|+..++.+++.|...+..... ..+..+..+||++++++|.++.+.|++|+
T Consensus 257 ~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~-~l~~~v~~~hgg~~~~eR~~ie~~f~~G~---- 329 (742)
T TIGR03817 257 SAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVDP-DLAERVAAYRAGYLPEDRRELERALRDGE---- 329 (742)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhcc-ccccchhheecCCCHHHHHHHHHHHHcCC----
Confidence 1122333333333 3568999999999999999998765432111 11457889999999999999999999998
Q ss_pred CCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccch
Q 008221 343 PPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTE 418 (573)
Q Consensus 343 ~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~ 418 (573)
.++|||||++|+||||++|++||++|+ |-+.++|+||+|||||. +.|.++.+.+.
T Consensus 330 ---i~vLVaTd~lerGIDI~~vd~VI~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 330 ---LLGVATTNALELGVDISGLDAVVIAGF------------------PGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred ---ceEEEECchHhccCCcccccEEEEeCC------------------CCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 899999999999999999999999999 99999999999999999 78999988863
No 45
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.7e-37 Score=300.01 Aligned_cols=339 Identities=16% Similarity=0.278 Sum_probs=280.5
Q ss_pred ccccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEE
Q 008221 40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMI 119 (573)
Q Consensus 40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i 119 (573)
+.-..+|++++|++.+++.+...||..|+.+|++.|..+-.|.++.+.+++|+|||.++...+++..+.. ....+.+.+
T Consensus 22 ~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-~ke~qalil 100 (397)
T KOG0327|consen 22 NEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-VKETQALIL 100 (397)
T ss_pred HHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc-hHHHHHHHh
Confidence 3446789999999999999999999999999999999999999999999999999999998888887643 234567888
Q ss_pred EEecCcccccccHHHHHHHhhhhcccchhceeeeeccc---ccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCc
Q 008221 120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC---SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHE 195 (573)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~---~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~ 195 (573)
+|+++++.+...+...+...++..+...+|........ ......+...|+|+...++-+..+ ....+++++||+|+
T Consensus 101 aPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 101 APTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE 180 (397)
T ss_pred cchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh
Confidence 99999988888888888887777777777754333111 122346778899999999988887 66699999999987
Q ss_pred CcccHHHHHHHHHHHHHhCC-CcEEEEecccccHH--HHHchhCCCCeeeecC----cccCCcccccCCCchhHHHHHHH
Q 008221 196 RTLATDVLFGLLKEVLKNRP-DLKLVVMSATLEAE--KFQGYFYGAPLMKVPG----RLHPVEIFYTQEPERDYLEAAIR 268 (573)
Q Consensus 196 r~~~~d~ll~~l~~l~~~~~-~~~iil~SATl~~~--~~~~~~~~~~~i~v~g----~~~~v~~~y~~~~~~~~~~~~~~ 268 (573)
+....+.+.+..+.+..| +.|++++|||++.+ ..++.|...|+...-+ ....++++|.......+ +.
T Consensus 181 --mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k----~~ 254 (397)
T KOG0327|consen 181 --MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEK----LD 254 (397)
T ss_pred --hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeecccccc----cc
Confidence 666677777777766554 88999999999765 4566776666543222 12457788887766554 44
Q ss_pred HHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceE
Q 008221 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 348 (573)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kv 348 (573)
++..++. .-.+.+||++|++.+..+..+|..+ ++.+..+||.|.+.+|..+...|+.|. .+|
T Consensus 255 ~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~---------~~~~s~~~~d~~q~~R~~~~~ef~~gs-------srv 316 (397)
T KOG0327|consen 255 TLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH---------GFTVSAIHGDMEQNERDTLMREFRSGS-------SRV 316 (397)
T ss_pred HHHHHHH--hhhcceEEecchhhHHHHHHHHhhC---------CceEEEeecccchhhhhHHHHHhhcCC-------ceE
Confidence 5566665 4557899999999999999999654 899999999999999999999999998 899
Q ss_pred EEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 349 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 349 llaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|++|++++||+||.++..||||++ |..+++|+||+||+||. ++|.++.++++++.
T Consensus 317 lIttdl~argidv~~~slvinydl------------------P~~~~~yihR~gr~gr~grkg~~in~v~~~d~ 372 (397)
T KOG0327|consen 317 LITTDLLARGIDVQQVSLVVNYDL------------------PARKENYIHRIGRAGRFGRKGVAINFVTEEDV 372 (397)
T ss_pred Eeeccccccccchhhcceeeeecc------------------ccchhhhhhhcccccccCCCceeeeeehHhhH
Confidence 999999999999999999999999 99999999999999999 99999999998876
No 46
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-36 Score=300.62 Aligned_cols=340 Identities=18% Similarity=0.163 Sum_probs=269.0
Q ss_pred ccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCcc----C-CChhhcCc
Q 008221 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVD----I-ETPDRRRK 116 (573)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~----~-~~~~~~~~ 116 (573)
...+|++++|.+++++++.+.|+..|+.+|+..||.+.+|++++..+.||||||.++..++++... . .......+
T Consensus 17 ~~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa 96 (569)
T KOG0346|consen 17 KEKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSA 96 (569)
T ss_pred hhccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhccccccccee
Confidence 346899999999999999999999999999999999999999999999999999998877654322 1 12234567
Q ss_pred eEEEEecCcccccccHHHHHHHhhhhcc--cch---hceeeeecccccccccccccCHHHHHHHHhcccc--cCCCcEEE
Q 008221 117 MMIACTQPRRVAAMSVSRRVAEEMDVTI--GEE---VGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL--LERYKVIV 189 (573)
Q Consensus 117 ~~i~~t~p~~~~~~~v~~~v~~~~~~~~--~~~---vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lI 189 (573)
++++||.+++.|+.++.+.+.......+ ... ....+.. ........|.+.|||.+++++.++.+ +...+++|
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~-~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LV 175 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS-VALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLV 175 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH-HHHccCCCeEEeChHHHHHHHhhccchhhhheeeEE
Confidence 8899999999999999888876554221 111 0000000 01112346778899999999999874 88999999
Q ss_pred EeCCCcCcccHHHHHHHHHHHHHhCC-CcEEEEeccccc--HHHHHchhCCCCee-eecCc----ccCCcccccCCCchh
Q 008221 190 LDEAHERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLE--AEKFQGYFYGAPLM-KVPGR----LHPVEIFYTQEPERD 261 (573)
Q Consensus 190 LDEa~~r~~~~d~ll~~l~~l~~~~~-~~~iil~SATl~--~~~~~~~~~~~~~i-~v~g~----~~~v~~~y~~~~~~~ 261 (573)
+||||+ +..-...+.++.+....| ..|.++||||+. ...+...|...|++ .+... +..+.+|+..+.+.|
T Consensus 176 vDEADL--llsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~D 253 (569)
T KOG0346|consen 176 VDEADL--LLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEED 253 (569)
T ss_pred echhhh--hhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccch
Confidence 999987 777777788888776655 789999999995 45666766655654 33322 245788998888777
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCC
Q 008221 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (573)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (573)
++-.+...+. ..--.|++|+|+++.+.+-.+.-.|++. +++.+.|.|.||..-|.-++++|..|.
T Consensus 254 KflllyallK---L~LI~gKsliFVNtIdr~YrLkLfLeqF---------GiksciLNseLP~NSR~Hii~QFNkG~--- 318 (569)
T KOG0346|consen 254 KFLLLYALLK---LRLIRGKSLIFVNTIDRCYRLKLFLEQF---------GIKSCILNSELPANSRCHIIEQFNKGL--- 318 (569)
T ss_pred hHHHHHHHHH---HHHhcCceEEEEechhhhHHHHHHHHHh---------CcHhhhhcccccccchhhHHHHhhCcc---
Confidence 7554333321 1234689999999999988888888775 888999999999999999999999998
Q ss_pred CCCCceEEEeecc-----------------------------------cccccccCCeEEEEcCCcccceeecccCCccc
Q 008221 342 GPPGRKIVVSTNI-----------------------------------AETSLTIDGIVYVIDPGFAKQKVYNPRVRVES 386 (573)
Q Consensus 342 ~~~~~kvllaT~i-----------------------------------ae~gitI~~V~~VId~g~~k~~~~d~~~~~~~ 386 (573)
..+|||||. ++||||+..|..|||||+
T Consensus 319 ----YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~-------------- 380 (569)
T KOG0346|consen 319 ----YDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF-------------- 380 (569)
T ss_pred ----eeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCC--------------
Confidence 899999992 269999999999999999
Q ss_pred ceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 387 LLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 387 l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|.+..+|+||+|||||. .+|.+..|+.+.+.
T Consensus 381 ----P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~ 412 (569)
T KOG0346|consen 381 ----PETVTSYIHRVGRTARGNNKGTALSFVSPKEE 412 (569)
T ss_pred ----CCchHHHHHhccccccCCCCCceEEEecchHH
Confidence 99999999999999999 89999999887654
No 47
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.9e-35 Score=332.72 Aligned_cols=445 Identities=16% Similarity=0.147 Sum_probs=280.1
Q ss_pred ccCCCCCChHHHHHHHHhcCCCChHHHHHHHHH-HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEec
Q 008221 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (573)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~-i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (573)
.|+++++++++.+.++++++..++++|.++++. +..|+++++++|||||||..+..+++...... ..+.+.++|++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P~~ 78 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVPLK 78 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeChH
Confidence 478889999999999999999999999999986 89999999999999999998876665432211 12345555554
Q ss_pred CcccccccHHHHHHH--hhhhcccchhceeeeecccccccccccccCHHHHHHHHhcc-cccCCCcEEEEeCCCcCc-cc
Q 008221 124 PRRVAAMSVSRRVAE--EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTD-PLLERYKVIVLDEAHERT-LA 199 (573)
Q Consensus 124 p~~~~~~~v~~~v~~--~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~-~ll~~~~~lILDEa~~r~-~~ 199 (573)
.+.. ...+.+.. ..+..++...|.... ......+..|.++|++++..++... .++.+.+++|+||+|.-. ..
T Consensus 79 aLa~---q~~~~~~~~~~~g~~v~~~~Gd~~~-~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~ 154 (720)
T PRK00254 79 ALAE---EKYREFKDWEKLGLRVAMTTGDYDS-TDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYD 154 (720)
T ss_pred HHHH---HHHHHHHHHhhcCCEEEEEeCCCCC-chhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCcc
Confidence 4433 33333332 123333333332111 0111123568889999987766543 358999999999999521 11
Q ss_pred HHHHHH-HHHHHHHhCCCcEEEEecccc-cHHHHHchhCCCCeeeecCcccCCcc--cc-----cCCCchh-HHHHHHHH
Q 008221 200 TDVLFG-LLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEI--FY-----TQEPERD-YLEAAIRT 269 (573)
Q Consensus 200 ~d~ll~-~l~~l~~~~~~~~iil~SATl-~~~~~~~~~~~~~~i~v~g~~~~v~~--~y-----~~~~~~~-~~~~~~~~ 269 (573)
....++ ++..+ .++.++|++|||+ +...++++++.. .+....+..+... ++ ......+ +.......
T Consensus 155 rg~~le~il~~l---~~~~qiI~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T PRK00254 155 RGATLEMILTHM---LGRAQILGLSATVGNAEELAEWLNAE-LVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESL 230 (720)
T ss_pred chHHHHHHHHhc---CcCCcEEEEEccCCCHHHHHHHhCCc-cccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHH
Confidence 222222 22222 2368999999999 577888877543 2222222222211 11 0111111 11122222
Q ss_pred HHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCC----------------CC--------CCeEEEEecCCCCHH
Q 008221 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGD----------------QV--------GPVKVVPLYSTLPPA 325 (573)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~----------------~~--------~~~~v~~lh~~l~~~ 325 (573)
+..... ..+++|||++++..++.++..|...+..... .. -...+..+||+|+++
T Consensus 231 ~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~ 308 (720)
T PRK00254 231 VYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRT 308 (720)
T ss_pred HHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHH
Confidence 322222 3568999999999999888777543211000 00 012488999999999
Q ss_pred HHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccC
Q 008221 326 MQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAG 405 (573)
Q Consensus 326 ~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaG 405 (573)
+|..+.+.|++|. .+|||||+.+++|+|+|++++||... ..|+. .+. .+.+..+|.||+||||
T Consensus 309 eR~~ve~~F~~G~-------i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~~-~~~-----~~~~~~~~~Qm~GRAG 371 (720)
T PRK00254 309 ERVLIEDAFREGL-------IKVITATPTLSAGINLPAFRVIIRDT----KRYSN-FGW-----EDIPVLEIQQMMGRAG 371 (720)
T ss_pred HHHHHHHHHHCCC-------CeEEEeCcHHhhhcCCCceEEEECCc----eEcCC-CCc-----eeCCHHHHHHhhhccC
Confidence 9999999999998 99999999999999999999999533 23431 111 2567789999999999
Q ss_pred CC---CCCeEEeccchhh----hhhhc--------CCCChhhhhccCchhHHHHHHHcC-CCcc---c-----cccCCCC
Q 008221 406 RT---QPGKCFRLYTEKS----FNNDL--------QPQTYPEILRSNLANTVLTLKKLG-IDDL---V-----HFDFMDP 461 (573)
Q Consensus 406 R~---~~G~~~~l~t~~~----~~~~~--------~~~~~pei~r~~l~~~~L~~k~~~-~~~~---~-----~~~~~~p 461 (573)
|. ..|.||.+.+..+ ++..+ ...+.++.++..+.. ....+ +.+. . .|-+...
T Consensus 372 R~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~----~i~~~~~~~~~~~~~~l~~Tf~~~~~ 447 (720)
T PRK00254 372 RPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLA----LITNFGVSNFKELVNFLERTFYAHQR 447 (720)
T ss_pred CCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHH----HHHhCCCCCHHHHHHHHHhCHHHHhh
Confidence 96 4799998876533 22121 222333444433333 22222 2221 1 1122223
Q ss_pred Cc----HHHHHHHHHHHHHcCCccCC--C--CcChhhhhhhcCCCChhhhhhhhhCCC----CCCHHHHHHHHH
Q 008221 462 PA----PETLMRALEVLNYLGALDDD--G--NLTEMGEKMSEFPLDPQMSKMLVESPK----YNCSNEILSISA 523 (573)
Q Consensus 462 P~----~~~~~~a~~~L~~lgald~~--~--~lT~lG~~~~~lp~~p~~~~~l~~~~~----~~c~~~~~~i~a 523 (573)
|+ ...++.++..|.+.|+|+.+ + ..|++|+.++.++++|..++.+..+.. ......++-+.+
T Consensus 448 ~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~ 521 (720)
T PRK00254 448 KDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIA 521 (720)
T ss_pred cChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhh
Confidence 43 34578889999999999654 3 369999999999999999999876542 123444554444
No 48
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-35 Score=320.67 Aligned_cols=352 Identities=18% Similarity=0.215 Sum_probs=271.0
Q ss_pred CCCcccCCccccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC-
Q 008221 32 PGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET- 110 (573)
Q Consensus 32 ~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~- 110 (573)
...-...-+.++..|.+.+++..++..+++.++-+++++|.+.||+|..|++|+.+|.||||||..|.++++.......
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 4444444567789999999999999999999999999999999999999999999999999999999877764333211
Q ss_pred ---hhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeecccc--cccccccccCHHHHHHHHhccc--c--
Q 008221 111 ---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDP--L-- 181 (573)
Q Consensus 111 ---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~~~~--l-- 181 (573)
..++-.++++||+++..|+......+.+..+..+...+|..-.-.+.. .....|.+||+|+...++.+.. +
T Consensus 433 ~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtn 512 (997)
T KOG0334|consen 433 LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTN 512 (997)
T ss_pred hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccc
Confidence 123445677888888888888777777777776666666432211111 1236788999999999887654 2
Q ss_pred cCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH--HHHHchhCCCCee-eecCc---ccCCccccc
Q 008221 182 LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQGYFYGAPLM-KVPGR---LHPVEIFYT 255 (573)
Q Consensus 182 l~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~--~~~~~~~~~~~~i-~v~g~---~~~v~~~y~ 255 (573)
+.++.++|+|||| |+.+..+.-...+.+...+|++|++++|||++. +.++......|+- .+.|+ ...|++.+.
T Consensus 513 lrR~t~lv~deaD-rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~ 591 (997)
T KOG0334|consen 513 LRRVTYLVLDEAD-RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVR 591 (997)
T ss_pred ccccceeeechhh-hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEE
Confidence 6777799999998 455443322222222223679999999999974 4555544445553 33443 235666666
Q ss_pred CCC-chhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCC
Q 008221 256 QEP-ERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPA 334 (573)
Q Consensus 256 ~~~-~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~ 334 (573)
.++ +..++..+..+|... ...+++|||+..+..++.+.+.|.+. ++.+..|||+.++.+|..+++.|
T Consensus 592 V~~~e~eKf~kL~eLl~e~---~e~~~tiiFv~~qe~~d~l~~~L~~a---------g~~~~slHGgv~q~dR~sti~df 659 (997)
T KOG0334|consen 592 VCAIENEKFLKLLELLGER---YEDGKTIIFVDKQEKADALLRDLQKA---------GYNCDSLHGGVDQHDRSSTIEDF 659 (997)
T ss_pred EecCchHHHHHHHHHHHHH---hhcCCEEEEEcCchHHHHHHHHHHhc---------CcchhhhcCCCchHHHHhHHHHH
Confidence 555 556666555554433 34789999999999999999999864 78888899999999999999999
Q ss_pred CCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEE
Q 008221 335 PPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCF 413 (573)
Q Consensus 335 ~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~ 413 (573)
+++. .++++||++++||||+.++..||||++ |-..+.|+||+|||||+ +.|.||
T Consensus 660 K~~~-------~~LLvaTsvvarGLdv~~l~Lvvnyd~------------------pnh~edyvhR~gRTgragrkg~Av 714 (997)
T KOG0334|consen 660 KNGV-------VNLLVATSVVARGLDVKELILVVNYDF------------------PNHYEDYVHRVGRTGRAGRKGAAV 714 (997)
T ss_pred hccC-------ceEEEehhhhhcccccccceEEEEccc------------------chhHHHHHHHhcccccCCccceeE
Confidence 9998 899999999999999999999999999 99999999999999999 889999
Q ss_pred eccchhhh
Q 008221 414 RLYTEKSF 421 (573)
Q Consensus 414 ~l~t~~~~ 421 (573)
.|.++++.
T Consensus 715 tFi~p~q~ 722 (997)
T KOG0334|consen 715 TFITPDQL 722 (997)
T ss_pred EEeChHHh
Confidence 99998543
No 49
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.2e-34 Score=298.85 Aligned_cols=342 Identities=15% Similarity=0.214 Sum_probs=281.7
Q ss_pred cCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEe
Q 008221 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (573)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t 122 (573)
...|+.+-+..+++..|...++.-++++|...||++..+-+++|.+.+|+|||..|..+.++..+. .....+.++++||
T Consensus 24 ~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~-~~~~~q~~Iv~PT 102 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS-RSSHIQKVIVTPT 102 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-ccCcceeEEEecc
Confidence 456999999999999999999999999999999999999999999999999999998877777663 2233567888999
Q ss_pred cCcccccccHHHHHHHh-hhhcccchhceee-eecccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCccc
Q 008221 123 QPRRVAAMSVSRRVAEE-MDVTIGEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (573)
Q Consensus 123 ~p~~~~~~~v~~~v~~~-~~~~~~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~ 199 (573)
++.++++..+...++.. .+......+|... ..+......++|.+.|||++.++.-.+++ .++++++||||||. .++
T Consensus 103 REiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADk-L~~ 181 (980)
T KOG4284|consen 103 REIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADK-LMD 181 (980)
T ss_pred hhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHh-hhc
Confidence 99988888877777653 3445555566442 22223334678999999999999988888 99999999999984 466
Q ss_pred HHHHHHHHHHHHHhCC-CcEEEEecccccH---HHHHchhCCCCeeeecCc---ccCCcccccCCCchh----HHHHHHH
Q 008221 200 TDVLFGLLKEVLKNRP-DLKLVVMSATLEA---EKFQGYFYGAPLMKVPGR---LHPVEIFYTQEPERD----YLEAAIR 268 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~-~~~iil~SATl~~---~~~~~~~~~~~~i~v~g~---~~~v~~~y~~~~~~~----~~~~~~~ 268 (573)
+..|.+.+..+....| .+|++.+|||.+. +.++.|+.++..+....+ .+.+++||...+..+ -+...+.
T Consensus 182 t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq 261 (980)
T KOG4284|consen 182 TESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQ 261 (980)
T ss_pred hhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHH
Confidence 6778888888777666 7899999999974 568888888777765432 467888877655432 2333455
Q ss_pred HHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceE
Q 008221 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 348 (573)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kv 348 (573)
.|-++....+--+.|||++....++.++.+|... ++.+..+.|.|+|.+|..+++..++-. .||
T Consensus 262 ~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss---------G~d~~~ISgaM~Q~~Rl~a~~~lr~f~-------~rI 325 (980)
T KOG4284|consen 262 KLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS---------GLDVTFISGAMSQKDRLLAVDQLRAFR-------VRI 325 (980)
T ss_pred HHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc---------CCCeEEeccccchhHHHHHHHHhhhce-------EEE
Confidence 6667777777778999999999999999999753 899999999999999999999998877 899
Q ss_pred EEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhh
Q 008221 349 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (573)
Q Consensus 349 llaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (573)
|||||+.+||||-|+|..|||-|. |.+.++|.||+|||||. ..|.+++|+-.+.
T Consensus 326 LVsTDLtaRGIDa~~vNLVVNiD~------------------p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 326 LVSTDLTARGIDADNVNLVVNIDA------------------PADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred EEecchhhccCCccccceEEecCC------------------CcchHHHHHHhhhcccccccceeEEEeccch
Confidence 999999999999999999999998 99999999999999999 7899999876544
No 50
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.6e-33 Score=299.67 Aligned_cols=312 Identities=15% Similarity=0.156 Sum_probs=210.1
Q ss_pred HhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 61 ~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
..|+..++++|.++++++.+|+++++++|||||||..+..+.+... ...++++|+.++.. ...+.+.. .
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~-------~~~lVi~P~~~L~~---dq~~~l~~-~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSD-------GITLVISPLISLME---DQVLQLKA-S 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcC-------CcEEEEecHHHHHH---HHHHHHHH-c
Confidence 4578889999999999999999999999999999998776655321 12466666655433 23333321 2
Q ss_pred hhcccchhceeeee------cccccccccccccCHHHHHHHH-hccc--ccCCCcEEEEeCCCcCcccHHHH---HHHHH
Q 008221 141 DVTIGEEVGYSIRF------EDCSSARTVLKYLTDGMLLREA-MTDP--LLERYKVIVLDEAHERTLATDVL---FGLLK 208 (573)
Q Consensus 141 ~~~~~~~vg~~~~~------~~~~~~~~~i~~lT~G~l~r~~-~~~~--ll~~~~~lILDEa~~r~~~~d~l---l~~l~ 208 (573)
+.......+..... .........+.+.||+.+.... .... ...+++++|+||||.-......+ +..+.
T Consensus 75 gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~ 154 (470)
T TIGR00614 75 GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALG 154 (470)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHH
Confidence 22211111110000 0011123457788998864322 1111 36789999999999633221112 22333
Q ss_pred HHHHhCCCcEEEEecccccHHH---HHchhC-CCCeeeecCcccCCcccccCCCch-hHHHHHHHHHHHHhhcCCCCCEE
Q 008221 209 EVLKNRPDLKLVVMSATLEAEK---FQGYFY-GAPLMKVPGRLHPVEIFYTQEPER-DYLEAAIRTVVQIHMCEPSGDIL 283 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~~~---~~~~~~-~~~~i~v~g~~~~v~~~y~~~~~~-~~~~~~~~~l~~i~~~~~~g~iL 283 (573)
.+....|+.+++++|||++... +...+. ..|.+...+...+ ..+|...... +........+. ...+....|
T Consensus 155 ~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~-nl~~~v~~~~~~~~~~l~~~l~---~~~~~~~~I 230 (470)
T TIGR00614 155 SLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRP-NLYYEVRRKTPKILEDLLRFIR---KEFKGKSGI 230 (470)
T ss_pred HHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCC-CcEEEEEeCCccHHHHHHHHHH---HhcCCCceE
Confidence 4445567889999999997542 333332 2333333222111 1222221111 22232222221 122344569
Q ss_pred EecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCC
Q 008221 284 VFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDG 363 (573)
Q Consensus 284 VFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~ 363 (573)
||++++.+++.+++.|... ++.+..+||+|++++|..+++.|..|. .+|||||+++++|||+|+
T Consensus 231 IF~~s~~~~e~la~~L~~~---------g~~~~~~H~~l~~~eR~~i~~~F~~g~-------~~vLVaT~~~~~GID~p~ 294 (470)
T TIGR00614 231 IYCPSRKKSEQVTASLQNL---------GIAAGAYHAGLEISARDDVHHKFQRDE-------IQVVVATVAFGMGINKPD 294 (470)
T ss_pred EEECcHHHHHHHHHHHHhc---------CCCeeEeeCCCCHHHHHHHHHHHHcCC-------CcEEEEechhhccCCccc
Confidence 9999999999999999864 788999999999999999999999998 899999999999999999
Q ss_pred eEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 364 IVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 364 V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|++||++++ |.|.++|.||+|||||. .+|.|+.+|+..+.
T Consensus 295 V~~VI~~~~------------------P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~ 335 (470)
T TIGR00614 295 VRFVIHYSL------------------PKSMESYYQESGRAGRDGLPSECHLFYAPADI 335 (470)
T ss_pred ceEEEEeCC------------------CCCHHHHHhhhcCcCCCCCCceEEEEechhHH
Confidence 999999999 99999999999999999 79999999998876
No 51
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.4e-32 Score=303.56 Aligned_cols=357 Identities=18% Similarity=0.165 Sum_probs=216.8
Q ss_pred hcCCCChHHHHHHHHHHhcCC-EEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceE-EEEecCcccccccHHHHHHHh
Q 008221 62 RKSLPVWQQKEEFLQVLKANQ-VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMM-IACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 62 ~~~lp~~~~q~~~i~~i~~g~-~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~-i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.|+. |+++|.++++.+..|+ ++++.+|||||||.++-.+++- .. ......+.++ ++|++++..|+...++.+.+.
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~-~~-~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~ 88 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLA-VE-IGAKVPRRLVYVVNRRTVVDQVTEEAEKIGER 88 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcc-cc-ccccccceEEEeCchHHHHHHHHHHHHHHHHH
Confidence 3666 9999999999999998 6777899999999966544431 11 1112233444 337777777777777777664
Q ss_pred hh-----------------------hcccchhceeeeecccc--cccccccccCHHHHHHHHhcccc-------------
Q 008221 140 MD-----------------------VTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPL------------- 181 (573)
Q Consensus 140 ~~-----------------------~~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~~~~l------------- 181 (573)
+. ..+...+|......+.. .....|.+.|. +++..+.+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~pi 164 (844)
T TIGR02621 89 LPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKSRPL 164 (844)
T ss_pred hcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccccccc
Confidence 41 12222233211111111 11234666773 44444443
Q ss_pred ----cCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhC--CCcEEEEecccccHH--HHHchhC-CCCeeeecCcc---cC
Q 008221 182 ----LERYKVIVLDEAHERTLATDVLFGLLKEVLKNR--PDLKLVVMSATLEAE--KFQGYFY-GAPLMKVPGRL---HP 249 (573)
Q Consensus 182 ----l~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~--~~~~iil~SATl~~~--~~~~~~~-~~~~i~v~g~~---~~ 249 (573)
+.+.++|||||||+++...+.+..+++.+.... ..+|+++||||++.+ .+...+. +...+.+.... ..
T Consensus 165 ~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~k 244 (844)
T TIGR02621 165 HAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKK 244 (844)
T ss_pred hhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccc
Confidence 688999999999976655555555554421111 126999999999642 3433343 22222322211 12
Q ss_pred CcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHh-
Q 008221 250 VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQ- 328 (573)
Q Consensus 250 v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~- 328 (573)
+.++ .......++...+..+..+.. ...+++||||||+++++.+++.|.+. ++ ..|||+|++.+|.
T Consensus 245 i~q~-v~v~~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~---------g~--~lLHG~m~q~dR~~ 311 (844)
T TIGR02621 245 IVKL-VPPSDEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKE---------KF--ELLTGTLRGAERDD 311 (844)
T ss_pred eEEE-EecChHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhc---------CC--eEeeCCCCHHHHhh
Confidence 2333 333333344444444433332 45678999999999999999999763 33 8999999999999
Q ss_pred ----hhcCCCCC----CCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHh
Q 008221 329 ----KIFEPAPP----PSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQR 400 (573)
Q Consensus 329 ----~~~~~~~~----g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR 400 (573)
++++.|++ +......++.+||||||++|+||||+. ++||+... | .++|+||
T Consensus 312 ~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~a------------------P--~esyIQR 370 (844)
T TIGR02621 312 LVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLA------------------P--FESMQQR 370 (844)
T ss_pred HHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCC------------------C--HHHHHHH
Confidence 77888876 221111223689999999999999997 77776433 5 4899999
Q ss_pred ccccCCC-CC-CeEEeccchhhhhhhcCCCChhhhhccCchhHHHHHHHcCCCccccccCC
Q 008221 401 SGRAGRT-QP-GKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFM 459 (573)
Q Consensus 401 ~GRaGR~-~~-G~~~~l~t~~~~~~~~~~~~~pei~r~~l~~~~L~~k~~~~~~~~~~~~~ 459 (573)
+||+||. +. |..+.+++.+.-...-....-|++++..+..+.+..+..|..+...|.++
T Consensus 371 iGRtgR~G~~~~~~i~vv~~~~~~~~~~~vY~~~~l~~t~~~L~~~~~~~~~~~~~al~~l 431 (844)
T TIGR02621 371 FGRVNRFGELQACQIAVVHLDLGKDQDFDVYGKKIDKSTWSTLKKLQQLKGKNKRAALGVL 431 (844)
T ss_pred hcccCCCCCCCCceEEEEeeccCCCcccCCCCHHHHHHHHHHHHHHHhccccCCHHHHhhc
Confidence 9999999 43 34355554321111111222478887777666665555554343334333
No 52
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6e-33 Score=307.25 Aligned_cols=321 Identities=16% Similarity=0.218 Sum_probs=216.8
Q ss_pred CChHHHHHHHH-hcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCccccc
Q 008221 51 YSQRYYEILEK-RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAA 129 (573)
Q Consensus 51 l~~~~~~~l~~-~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~ 129 (573)
..+...+.+++ .|+..++++|+++++++.+|+++++++|||||||+.+..+.+... ...++++|+..+..
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~-------g~tlVisPl~sL~~-- 79 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLD-------GLTLVVSPLISLMK-- 79 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcC-------CCEEEEecHHHHHH--
Confidence 33444455554 488899999999999999999999999999999997765554321 12355555444322
Q ss_pred ccHHHHHHHhhhhcccchhceeee------ecccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcccHHH
Q 008221 130 MSVSRRVAEEMDVTIGEEVGYSIR------FEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDV 202 (573)
Q Consensus 130 ~~v~~~v~~~~~~~~~~~vg~~~~------~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~~d~ 202 (573)
...+.+.. .+.......+.... +.........+.++||+++........+ ..+++++|+||||.-+.....
T Consensus 80 -dqv~~l~~-~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 80 -DQVDQLLA-NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred -HHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCc
Confidence 22222221 12211111010000 0011112345678899987643322223 457899999999963322221
Q ss_pred H---HHHHHHHHHhCCCcEEEEecccccHHH---HHchh-CCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhh
Q 008221 203 L---FGLLKEVLKNRPDLKLVVMSATLEAEK---FQGYF-YGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHM 275 (573)
Q Consensus 203 l---l~~l~~l~~~~~~~~iil~SATl~~~~---~~~~~-~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~ 275 (573)
+ +..+..+....|+.+++++|||.+... +...+ ...|.+.+.+...| ...|........... +.....
T Consensus 158 fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~v~~~~~~~~~----l~~~l~ 232 (607)
T PRK11057 158 FRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYTLVEKFKPLDQ----LMRYVQ 232 (607)
T ss_pred ccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceeeeeeccchHHH----HHHHHH
Confidence 1 234455555567899999999997532 33332 23455444332222 222322222222222 222223
Q ss_pred cCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccc
Q 008221 276 CEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA 355 (573)
Q Consensus 276 ~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~ia 355 (573)
....+++|||++++.+++.+++.|... ++.+..+||+|++++|.++++.|..|. .+|||||+++
T Consensus 233 ~~~~~~~IIFc~tr~~~e~la~~L~~~---------g~~v~~~Ha~l~~~~R~~i~~~F~~g~-------~~VLVaT~a~ 296 (607)
T PRK11057 233 EQRGKSGIIYCNSRAKVEDTAARLQSR---------GISAAAYHAGLDNDVRADVQEAFQRDD-------LQIVVATVAF 296 (607)
T ss_pred hcCCCCEEEEECcHHHHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHHCCC-------CCEEEEechh
Confidence 345678999999999999999999874 788999999999999999999999988 8999999999
Q ss_pred ccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 356 ETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 356 e~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
++|||+|+|++||++|+ |.|.++|.||+|||||. .+|.|+.||+..+.
T Consensus 297 ~~GIDip~V~~VI~~d~------------------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~ 345 (607)
T PRK11057 297 GMGINKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (607)
T ss_pred hccCCCCCcCEEEEeCC------------------CCCHHHHHHHhhhccCCCCCceEEEEeCHHHH
Confidence 99999999999999999 99999999999999999 78999999998875
No 53
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=283.86 Aligned_cols=345 Identities=18% Similarity=0.191 Sum_probs=242.8
Q ss_pred cccCccCCCCCChHHHH----------HHHHhcCCCChHHHHHHHHHHh---------cCCEEEEEcCCCCchhhhhhhh
Q 008221 41 SLINRWNGKPYSQRYYE----------ILEKRKSLPVWQQKEEFLQVLK---------ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 41 ~~~~~f~~~~l~~~~~~----------~l~~~~~lp~~~~q~~~i~~i~---------~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
...+.|+.++++..... ++..+++...+|+|..+++++. .+.+++|.+|||||||..+..+
T Consensus 124 nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iP 203 (620)
T KOG0350|consen 124 NSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIP 203 (620)
T ss_pred CceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhH
Confidence 34567888888765433 4788999999999999999982 2578999999999999999888
Q ss_pred hhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceee-eecc--cccc----cccccccCHHHHHH
Q 008221 102 VLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSI-RFED--CSSA----RTVLKYLTDGMLLR 174 (573)
Q Consensus 102 ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~-~~~~--~~~~----~~~i~~lT~G~l~r 174 (573)
++.-..-......+.++++|++.+..|+..+.+++....+..++...|-.. ..+. .... .-.|.+.|||++.+
T Consensus 204 IVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVD 283 (620)
T KOG0350|consen 204 IVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVD 283 (620)
T ss_pred HHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHH
Confidence 776544222344567889999999999888888888877766655555221 1110 0011 22567789999999
Q ss_pred HHhccc-c-cCCCcEEEEeCCCcCcccHHHHHHHHHHHHHh-----------------------------------CCCc
Q 008221 175 EAMTDP-L-LERYKVIVLDEAHERTLATDVLFGLLKEVLKN-----------------------------------RPDL 217 (573)
Q Consensus 175 ~~~~~~-l-l~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~-----------------------------------~~~~ 217 (573)
++-+.. + |.+.+++|+||||. .++ ..+.+++-.+... .+.+
T Consensus 284 Hl~~~k~f~Lk~LrfLVIDEADR-ll~-qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l 361 (620)
T KOG0350|consen 284 HLNNTKSFDLKHLRFLVIDEADR-LLD-QSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPL 361 (620)
T ss_pred hccCCCCcchhhceEEEechHHH-HHH-HHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchh
Confidence 998644 4 99999999999983 333 2222222221110 1223
Q ss_pred EEEEecccc--cHHHHHchhCCCC-eeeecCc---cc----CCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecC
Q 008221 218 KLVVMSATL--EAEKFQGYFYGAP-LMKVPGR---LH----PVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLT 287 (573)
Q Consensus 218 ~iil~SATl--~~~~~~~~~~~~~-~i~v~g~---~~----~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 287 (573)
.-+++|||+ +..++.+.-.+.| +..+.+. .| .+.+++......-+.- .+........-.++|+|.+
T Consensus 362 ~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl----~~~~lI~~~k~~r~lcf~~ 437 (620)
T KOG0350|consen 362 WKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPL----AVYALITSNKLNRTLCFVN 437 (620)
T ss_pred HhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchH----hHHHHHHHhhcceEEEEec
Confidence 356677776 3455555433444 3333321 11 1223332222111111 2222223345568999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEE
Q 008221 288 GEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYV 367 (573)
Q Consensus 288 ~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~V 367 (573)
+...+..++..|.-.+. ..++++-.+-|+++...|.+.++.|..|. .+||||||+.+||||+.||+.|
T Consensus 438 S~~sa~Rl~~~L~v~~~-----~~~~~~s~~t~~l~~k~r~k~l~~f~~g~-------i~vLIcSD~laRGiDv~~v~~V 505 (620)
T KOG0350|consen 438 SVSSANRLAHVLKVEFC-----SDNFKVSEFTGQLNGKRRYKMLEKFAKGD-------INVLICSDALARGIDVNDVDNV 505 (620)
T ss_pred chHHHHHHHHHHHHHhc-----cccchhhhhhhhhhHHHHHHHHHHHhcCC-------ceEEEehhhhhcCCcccccceE
Confidence 99999999999974322 23566777899999999999999999998 8999999999999999999999
Q ss_pred EcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 368 IDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 368 Id~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|||+. |.+..+|+||+|||||+ +.|.||+|.+.++.
T Consensus 506 INYd~------------------P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 506 INYDP------------------PASDKTYVHRAGRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred eecCC------------------CchhhHHHHhhcccccccCCceEEEeeccccc
Confidence 99999 99999999999999999 89999999998765
No 54
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.3e-32 Score=307.58 Aligned_cols=328 Identities=15% Similarity=0.155 Sum_probs=217.2
Q ss_pred ccCCCCC--ChHHHHHHHH-hcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEE
Q 008221 45 RWNGKPY--SQRYYEILEK-RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIAC 121 (573)
Q Consensus 45 ~f~~~~l--~~~~~~~l~~-~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~ 121 (573)
.|...++ +..+...++. .|+....+.|.++|+++..|++++++.|||+|||..+..+.+... ...++|.|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~-------GiTLVISP 508 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICP-------GITLVISP 508 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcC-------CcEEEEeC
Confidence 3654443 4455544443 478889999999999999999999999999999998887776432 12455666
Q ss_pred ecCcccccccHHHHHHHhhhhcccchhceeee------ecccc--cccccccccCHHHHHH--HHhc----ccccCCCcE
Q 008221 122 TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIR------FEDCS--SARTVLKYLTDGMLLR--EAMT----DPLLERYKV 187 (573)
Q Consensus 122 t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~------~~~~~--~~~~~i~~lT~G~l~r--~~~~----~~ll~~~~~ 187 (573)
+..+.. .....+.. .+.......+.... +.... .....+.+.||+++.. .++. ......+..
T Consensus 509 LiSLmq---DQV~~L~~-~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~Lsl 584 (1195)
T PLN03137 509 LVSLIQ---DQIMNLLQ-ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLAR 584 (1195)
T ss_pred HHHHHH---HHHHHHHh-CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccce
Confidence 544432 11111211 12221111111000 00000 1235688899998752 1111 111345789
Q ss_pred EEEeCCCcCcccHHHHH---HHHHHHHHhCCCcEEEEecccccHH---HHHchhCC-CCeeeecCcccCCcccccCCCch
Q 008221 188 IVLDEAHERTLATDVLF---GLLKEVLKNRPDLKLVVMSATLEAE---KFQGYFYG-APLMKVPGRLHPVEIFYTQEPER 260 (573)
Q Consensus 188 lILDEa~~r~~~~d~ll---~~l~~l~~~~~~~~iil~SATl~~~---~~~~~~~~-~~~i~v~g~~~~v~~~y~~~~~~ 260 (573)
||+||||.-......+. ..+..+.+..++.+++++|||+... .+.+.+.. .+++...+. .....+|...+..
T Consensus 585 IVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf-~RpNL~y~Vv~k~ 663 (1195)
T PLN03137 585 FVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSF-NRPNLWYSVVPKT 663 (1195)
T ss_pred eccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeeccc-CccceEEEEeccc
Confidence 99999996322221222 2233344556788999999999753 34444432 223322222 1223444433332
Q ss_pred hH-HHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCC
Q 008221 261 DY-LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSK 339 (573)
Q Consensus 261 ~~-~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~ 339 (573)
.. ...+... +......+..||||.++.+++.++..|... ++.+.++||+|++++|..+++.|..|.
T Consensus 664 kk~le~L~~~---I~~~~~~esgIIYC~SRke~E~LAe~L~~~---------Gika~~YHAGLs~eeR~~vqe~F~~Ge- 730 (1195)
T PLN03137 664 KKCLEDIDKF---IKENHFDECGIIYCLSRMDCEKVAERLQEF---------GHKAAFYHGSMDPAQRAFVQKQWSKDE- 730 (1195)
T ss_pred hhHHHHHHHH---HHhcccCCCceeEeCchhHHHHHHHHHHHC---------CCCeeeeeCCCCHHHHHHHHHHHhcCC-
Confidence 22 1212211 222223457899999999999999999864 788999999999999999999999998
Q ss_pred CCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccch
Q 008221 340 EGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTE 418 (573)
Q Consensus 340 ~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~ 418 (573)
.+|||||+++++|||+|+|++||++|+ |.|.++|.||+|||||. .+|.|+.||+.
T Consensus 731 ------i~VLVATdAFGMGIDkPDVR~VIHydl------------------PkSiEsYyQriGRAGRDG~~g~cILlys~ 786 (1195)
T PLN03137 731 ------INIICATVAFGMGINKPDVRFVIHHSL------------------PKSIEGYHQECGRAGRDGQRSSCVLYYSY 786 (1195)
T ss_pred ------CcEEEEechhhcCCCccCCcEEEEcCC------------------CCCHHHHHhhhcccCCCCCCceEEEEecH
Confidence 899999999999999999999999999 99999999999999999 79999999998
Q ss_pred hhh
Q 008221 419 KSF 421 (573)
Q Consensus 419 ~~~ 421 (573)
.++
T Consensus 787 ~D~ 789 (1195)
T PLN03137 787 SDY 789 (1195)
T ss_pred HHH
Confidence 776
No 55
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-34 Score=280.51 Aligned_cols=340 Identities=17% Similarity=0.192 Sum_probs=266.9
Q ss_pred cCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEe
Q 008221 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (573)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t 122 (573)
...|..++|+...++++.+.++..++|+|.+.+|.|.++++++..+.||||||.++..+.++..........++.++.|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 35799999999999999999999999999999999999999999999999999999988876654222223467888999
Q ss_pred cCcccccccHHHHHHHhhhhcccchhceeeeecccccc--cccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCccc
Q 008221 123 QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA--RTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (573)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~--~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~ 199 (573)
+++.+|++.+.+.+++..+.+....+|.....++.... +..+...|||++..+.....+ |+.+.++|+||+|. +.
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr--lf 177 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR--LF 177 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH--HH
Confidence 99999999999999887776666566643222222222 455677899999887766666 99999999999974 66
Q ss_pred HHHHHHHHHHHHHhCC-CcEEEEecccccHH--HHHchhCCCCe-ee--ecCc-ccCCcccccCCCchhHHHHHHHHHHH
Q 008221 200 TDVLFGLLKEVLKNRP-DLKLVVMSATLEAE--KFQGYFYGAPL-MK--VPGR-LHPVEIFYTQEPERDYLEAAIRTVVQ 272 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~-~~~iil~SATl~~~--~~~~~~~~~~~-i~--v~g~-~~~v~~~y~~~~~~~~~~~~~~~l~~ 272 (573)
...+.+.+++++.+.| +.|+++||||++.. .|++--...|+ +. ++.+ ...+++.|......++..+++..+-.
T Consensus 178 emgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~ 257 (529)
T KOG0337|consen 178 EMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGG 257 (529)
T ss_pred hhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhc
Confidence 6666777777776655 78999999999754 44433223333 32 2222 22355566555555554433333222
Q ss_pred HhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEee
Q 008221 273 IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST 352 (573)
Q Consensus 273 i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT 352 (573)
...+.+.+||++++..++.+...|... ++.+-.++|.|++..|...+..|..++ ..+++.|
T Consensus 258 ---~~~~~~t~vf~~tk~hve~~~~ll~~~---------g~~~s~iysslD~~aRk~~~~~F~~~k-------~~~lvvT 318 (529)
T KOG0337|consen 258 ---RIKDKQTIVFVATKHHVEYVRGLLRDF---------GGEGSDIYSSLDQEARKINGRDFRGRK-------TSILVVT 318 (529)
T ss_pred ---cccccceeEEecccchHHHHHHHHHhc---------CCCccccccccChHhhhhccccccCCc-------cceEEEe
Confidence 122457899999999999999999875 777888999999999999999999988 8999999
Q ss_pred cccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 353 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 353 ~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|+|+||+|||..+-||||++ |.+..-++||.||+.|+ +.|.+|.++...+.
T Consensus 319 dvaaRG~diplldnvinyd~------------------p~~~klFvhRVgr~aragrtg~aYs~V~~~~~ 370 (529)
T KOG0337|consen 319 DVAARGLDIPLLDNVINYDF------------------PPDDKLFVHRVGRVARAGRTGRAYSLVASTDD 370 (529)
T ss_pred hhhhccCCCccccccccccC------------------CCCCceEEEEecchhhccccceEEEEEecccc
Confidence 99999999999999999999 99999999999999999 79999999886654
No 56
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=3.4e-32 Score=280.73 Aligned_cols=343 Identities=16% Similarity=0.193 Sum_probs=248.1
Q ss_pred ccccCccCC----CCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC----h
Q 008221 40 NSLINRWNG----KPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET----P 111 (573)
Q Consensus 40 ~~~~~~f~~----~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~----~ 111 (573)
..++.+|.+ +..++.+++.+...+|..++++|.+.++.+.++++++.++|||||||.++..+++....... .
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 556677876 45678889999999999999999999999999999999999999999999988776543221 2
Q ss_pred hhcCceEEEEecCcccccccHHHHHH--Hhhhhcccchhceeee----ecccccccccccccCHHHHHHHHhccc---cc
Q 008221 112 DRRRKMMIACTQPRRVAAMSVSRRVA--EEMDVTIGEEVGYSIR----FEDCSSARTVLKYLTDGMLLREAMTDP---LL 182 (573)
Q Consensus 112 ~~~~~~~i~~t~p~~~~~~~v~~~v~--~~~~~~~~~~vg~~~~----~~~~~~~~~~i~~lT~G~l~r~~~~~~---ll 182 (573)
.+.+++++.|+++++.+.......+. .+.+...... .+... ..........+...||-++..++-..+ -+
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~-~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl 286 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQF-SKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDL 286 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhc-ccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchh
Confidence 33456777777777766555544444 2222111110 01100 000111234456678888888777665 38
Q ss_pred CCCcEEEEeCCCcCcccHHHHHHHHHHHHHh--CCCcEEEEeccccc--HHHHHchhCCCCeeeecCc----ccCCcccc
Q 008221 183 ERYKVIVLDEAHERTLATDVLFGLLKEVLKN--RPDLKLVVMSATLE--AEKFQGYFYGAPLMKVPGR----LHPVEIFY 254 (573)
Q Consensus 183 ~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~--~~~~~iil~SATl~--~~~~~~~~~~~~~i~v~g~----~~~v~~~y 254 (573)
.++.++|+||+|+ ......+...+..+.+. .|+..+-+||||+. +++++.-....++..+-|. ...|++..
T Consensus 287 ~~V~~lV~dEaD~-lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~Qel 365 (593)
T KOG0344|consen 287 SKVEWLVVDEADL-LFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQEL 365 (593)
T ss_pred heeeeEeechHHh-hhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhh
Confidence 9999999999984 22223666666555442 25888999999995 5677765544444333343 22455554
Q ss_pred cCCCch-hHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCC
Q 008221 255 TQEPER-DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEP 333 (573)
Q Consensus 255 ~~~~~~-~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~ 333 (573)
..+... .++-+ +..+ ....-+-++|||+-+.+.+..+...|.. ..++.+-.+||..++.+|.++++.
T Consensus 366 vF~gse~~K~lA-~rq~---v~~g~~PP~lIfVQs~eRak~L~~~L~~--------~~~i~v~vIh~e~~~~qrde~~~~ 433 (593)
T KOG0344|consen 366 VFCGSEKGKLLA-LRQL---VASGFKPPVLIFVQSKERAKQLFEELEI--------YDNINVDVIHGERSQKQRDETMER 433 (593)
T ss_pred eeeecchhHHHH-HHHH---HhccCCCCeEEEEecHHHHHHHHHHhhh--------ccCcceeeEecccchhHHHHHHHH
Confidence 444332 22222 2222 2223455899999999999999888851 248899999999999999999999
Q ss_pred CCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeE
Q 008221 334 APPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKC 412 (573)
Q Consensus 334 ~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~ 412 (573)
|+.|+ ..|++|||+.+||||+.||..|||||+ |-|.-+|+||+||+||+ ++|.+
T Consensus 434 FR~g~-------IwvLicTdll~RGiDf~gvn~VInyD~------------------p~s~~syihrIGRtgRag~~g~A 488 (593)
T KOG0344|consen 434 FRIGK-------IWVLICTDLLARGIDFKGVNLVINYDF------------------PQSDLSYIHRIGRTGRAGRSGKA 488 (593)
T ss_pred HhccC-------eeEEEehhhhhccccccCcceEEecCC------------------CchhHHHHHHhhccCCCCCCcce
Confidence 99999 999999999999999999999999999 99999999999999999 89999
Q ss_pred Eeccchhhh
Q 008221 413 FRLYTEKSF 421 (573)
Q Consensus 413 ~~l~t~~~~ 421 (573)
|+|||+++.
T Consensus 489 itfytd~d~ 497 (593)
T KOG0344|consen 489 ITFYTDQDM 497 (593)
T ss_pred EEEeccccc
Confidence 999999776
No 57
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.97 E-value=8.8e-30 Score=291.68 Aligned_cols=334 Identities=18% Similarity=0.178 Sum_probs=211.8
Q ss_pred CChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC--hhhcCceEEEEecCcccc
Q 008221 51 YSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET--PDRRRKMMIACTQPRRVA 128 (573)
Q Consensus 51 l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~--~~~~~~~~i~~t~p~~~~ 128 (573)
+++.+.+.+.. ++..++++|.++++.+.+|+++++++|||||||.++-.++++...... ......+.++...|.+..
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56777777655 677899999999999999999999999999999988777664332100 000112223333344444
Q ss_pred cccHHHHHHHh----------hhhcc-----cchhceeeeecc--cccccccccccCHHHHHHHHhccc---ccCCCcEE
Q 008221 129 AMSVSRRVAEE----------MDVTI-----GEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDP---LLERYKVI 188 (573)
Q Consensus 129 ~~~v~~~v~~~----------~~~~~-----~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~---ll~~~~~l 188 (573)
+..+.+++... .+... +...|.....+. .......|.+.||+.+..++.... .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 44444433211 11111 111111100000 001124577889999876654432 47899999
Q ss_pred EEeCCCcCccc--HHHHHHHHHHHHHhC-CCcEEEEeccccc-HHHHHchhCCC-------CeeeecCc---ccCCcccc
Q 008221 189 VLDEAHERTLA--TDVLFGLLKEVLKNR-PDLKLVVMSATLE-AEKFQGYFYGA-------PLMKVPGR---LHPVEIFY 254 (573)
Q Consensus 189 ILDEa~~r~~~--~d~ll~~l~~l~~~~-~~~~iil~SATl~-~~~~~~~~~~~-------~~i~v~g~---~~~v~~~y 254 (573)
|+||+|.-.-. ...+...+.++.... ++.++|.+|||+. .+.+++++.+. ++..+.+. ..++....
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~ 256 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVIS 256 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEec
Confidence 99999962111 112223333333322 4789999999995 45666665431 22222221 11111111
Q ss_pred c-----CCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhh
Q 008221 255 T-----QEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQK 329 (573)
Q Consensus 255 ~-----~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 329 (573)
. ..............+..+.. ..+++|||++|+..++.++..|...... ...+..+..+||+|++++|..
T Consensus 257 p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~---~~~~~~i~~hHg~ls~~~R~~ 331 (876)
T PRK13767 257 PVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPE---EYDEDNIGAHHSSLSREVRLE 331 (876)
T ss_pred cCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchh---hccccceeeeeCCCCHHHHHH
Confidence 0 01111112223333333322 3568999999999999999999764211 012467899999999999999
Q ss_pred hcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC--
Q 008221 330 IFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-- 407 (573)
Q Consensus 330 ~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-- 407 (573)
+.+.|++|. .+|||||+++|+|||||+|++||++|. |.|.++|+||+|||||.
T Consensus 332 ve~~fk~G~-------i~vLVaTs~Le~GIDip~Vd~VI~~~~------------------P~sv~~ylQRiGRaGR~~g 386 (876)
T PRK13767 332 VEEKLKRGE-------LKVVVSSTSLELGIDIGYIDLVVLLGS------------------PKSVSRLLQRIGRAGHRLG 386 (876)
T ss_pred HHHHHHcCC-------CeEEEECChHHhcCCCCCCcEEEEeCC------------------CCCHHHHHHhcccCCCCCC
Confidence 999999998 899999999999999999999999998 99999999999999986
Q ss_pred --CCCeEEec
Q 008221 408 --QPGKCFRL 415 (573)
Q Consensus 408 --~~G~~~~l 415 (573)
..|.+|..
T Consensus 387 ~~~~g~ii~~ 396 (876)
T PRK13767 387 EVSKGRIIVV 396 (876)
T ss_pred CCCcEEEEEc
Confidence 24777765
No 58
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=2.5e-30 Score=286.99 Aligned_cols=309 Identities=14% Similarity=0.153 Sum_probs=207.8
Q ss_pred hcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 62 RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 62 ~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
.|+....+.|.++++++.+|+++++++|||+|||+.+..+.+... ...++++|+..+ .....+.+.. .+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~-------g~~lVisPl~sL---~~dq~~~l~~-~g 77 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLK-------GLTVVISPLISL---MKDQVDQLRA-AG 77 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcC-------CcEEEEcCCHHH---HHHHHHHHHH-cC
Confidence 578889999999999999999999999999999998776655321 123444444333 2222333322 22
Q ss_pred hcccchhceeeeec-------ccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcccHHHH---HHHHHHH
Q 008221 142 VTIGEEVGYSIRFE-------DCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVL---FGLLKEV 210 (573)
Q Consensus 142 ~~~~~~vg~~~~~~-------~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~~d~l---l~~l~~l 210 (573)
..+...-+ ..... ........+.++|++++........+ ..+.++||+||||.-+.....+ +..+..+
T Consensus 78 i~~~~~~s-~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l 156 (591)
T TIGR01389 78 VAAAYLNS-TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSL 156 (591)
T ss_pred CcEEEEeC-CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHH
Confidence 22111000 00000 00112345667899887543322222 5689999999999643222212 2334444
Q ss_pred HHhCCCcEEEEecccccHHH---HHchhC-CCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEec
Q 008221 211 LKNRPDLKLVVMSATLEAEK---FQGYFY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFL 286 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~~~---~~~~~~-~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl 286 (573)
....|+..++++|||.+... +..++. ..+.+.+.+. .....+|......+....+... ......++.|||+
T Consensus 157 ~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~-~r~nl~~~v~~~~~~~~~l~~~----l~~~~~~~~IIf~ 231 (591)
T TIGR01389 157 AERFPQVPRIALTATADAETRQDIRELLRLADANEFITSF-DRPNLRFSVVKKNNKQKFLLDY----LKKHRGQSGIIYA 231 (591)
T ss_pred HHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCC-CCCCcEEEEEeCCCHHHHHHHH----HHhcCCCCEEEEE
Confidence 55556677999999996543 344443 2222222221 1123333322222332222222 2223356889999
Q ss_pred CcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEE
Q 008221 287 TGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVY 366 (573)
Q Consensus 287 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~ 366 (573)
+++.+++.+++.|... ++.+.++||+|+.++|..+++.|..|. .+|||||+++++|||+|+|++
T Consensus 232 ~sr~~~e~la~~L~~~---------g~~~~~~H~~l~~~~R~~i~~~F~~g~-------~~vlVaT~a~~~GID~p~v~~ 295 (591)
T TIGR01389 232 SSRKKVEELAERLESQ---------GISALAYHAGLSNKVRAENQEDFLYDD-------VKVMVATNAFGMGIDKPNVRF 295 (591)
T ss_pred CcHHHHHHHHHHHHhC---------CCCEEEEECCCCHHHHHHHHHHHHcCC-------CcEEEEechhhccCcCCCCCE
Confidence 9999999999999764 788999999999999999999999988 899999999999999999999
Q ss_pred EEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 367 VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 367 VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
||++++ |.|.++|.||+|||||. .+|.|+.+|+..+.
T Consensus 296 VI~~~~------------------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 296 VIHYDM------------------PGNLESYYQEAGRAGRDGLPAEAILLYSPADI 333 (591)
T ss_pred EEEcCC------------------CCCHHHHhhhhccccCCCCCceEEEecCHHHH
Confidence 999999 99999999999999999 68999999998875
No 59
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.96 E-value=5.1e-29 Score=282.79 Aligned_cols=315 Identities=16% Similarity=0.175 Sum_probs=207.6
Q ss_pred hHHHHHH-HHhcCCCChHHHHHHHHHHhcC------CEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCc
Q 008221 53 QRYYEIL-EKRKSLPVWQQKEEFLQVLKAN------QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPR 125 (573)
Q Consensus 53 ~~~~~~l-~~~~~lp~~~~q~~~i~~i~~g------~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~ 125 (573)
..+.+.+ ...++ .+++.|.++++.+.++ .+.+++|+||||||..+..+++.... . ..+.++++||..+
T Consensus 438 ~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-~---g~qvlvLvPT~~L 512 (926)
T TIGR00580 438 LEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-D---GKQVAVLVPTTLL 512 (926)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-h---CCeEEEEeCcHHH
Confidence 3444444 33456 4799999999999875 68899999999999977765553322 1 1346777788777
Q ss_pred ccccccHHHHHHHhhhhcccchhceeeeec------ccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCccc
Q 008221 126 RVAAMSVSRRVAEEMDVTIGEEVGYSIRFE------DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLA 199 (573)
Q Consensus 126 ~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~------~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~ 199 (573)
+.|............+..+....|.....+ ........|.+.|+.. +.....+.+.+++|+||+|. ..
T Consensus 513 A~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~~~v~f~~L~llVIDEahr--fg 586 (926)
T TIGR00580 513 AQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQKDVKFKDLGLLIIDEEQR--FG 586 (926)
T ss_pred HHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hhCCCCcccCCEEEeecccc--cc
Confidence 666555554443333333222222110000 0011123566778732 22233478999999999996 32
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecccccHHHHHch---hCCCCeeeec-CcccCCcccccCCCchhHHHHHHHHHHHHhh
Q 008221 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGY---FYGAPLMKVP-GRLHPVEIFYTQEPERDYLEAAIRTVVQIHM 275 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~~~~iil~SATl~~~~~~~~---~~~~~~i~v~-g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~ 275 (573)
. ...+.++. ..++.++++||||+....+... ..+..++..+ ....+++.++..... ..+ ...+....
T Consensus 587 v-~~~~~L~~---~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~i---~~~i~~el- 657 (926)
T TIGR00580 587 V-KQKEKLKE---LRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-ELV---REAIRREL- 657 (926)
T ss_pred h-hHHHHHHh---cCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCH-HHH---HHHHHHHH-
Confidence 2 22233333 2347899999999865443321 2233333332 123466666653321 111 11121111
Q ss_pred cCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccc
Q 008221 276 CEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIA 355 (573)
Q Consensus 276 ~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~ia 355 (573)
...++++||+|+.++++.+++.|.+. .+++.+..+||+|++.+|.++++.|+.|+ .+|||||+++
T Consensus 658 -~~g~qv~if~n~i~~~e~l~~~L~~~-------~p~~~v~~lHG~m~~~eRe~im~~F~~Gk-------~~ILVaT~ii 722 (926)
T TIGR00580 658 -LRGGQVFYVHNRIESIEKLATQLREL-------VPEARIAIAHGQMTENELEEVMLEFYKGE-------FQVLVCTTII 722 (926)
T ss_pred -HcCCeEEEEECCcHHHHHHHHHHHHh-------CCCCeEEEecCCCCHHHHHHHHHHHHcCC-------CCEEEECChh
Confidence 24578999999999999999999864 24688999999999999999999999998 8999999999
Q ss_pred ccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchh
Q 008221 356 ETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEK 419 (573)
Q Consensus 356 e~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~ 419 (573)
|+|||||+|++||.++.. .-+.++|.||+||+||. +.|.||.|++..
T Consensus 723 e~GIDIp~v~~VIi~~a~-----------------~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 723 ETGIDIPNANTIIIERAD-----------------KFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred hcccccccCCEEEEecCC-----------------CCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999999999976551 12456899999999999 899999998754
No 60
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=1.2e-28 Score=285.33 Aligned_cols=309 Identities=16% Similarity=0.200 Sum_probs=202.1
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHhcC------CEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcc
Q 008221 53 QRYYEILEKRKSLPVWQQKEEFLQVLKAN------QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRR 126 (573)
Q Consensus 53 ~~~~~~l~~~~~lp~~~~q~~~i~~i~~g------~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~ 126 (573)
.++.+......+ .+++.|.++++.+..+ .+++++|+||||||..+....+.... ...+.++++||..++
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~----~g~qvlvLvPT~eLA 662 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE----NHKQVAVLVPTTLLA 662 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----cCCeEEEEeCcHHHH
Confidence 344555555555 6899999999999887 78999999999999765433322111 113456677777666
Q ss_pred cccccHHHHHHHhhhhcccchhceeeeeccc------ccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccH
Q 008221 127 VAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC------SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLAT 200 (573)
Q Consensus 127 ~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~------~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~ 200 (573)
.|............+..+....|.....+.. ......|.+.|++.+. ....+.+.+++|+||+|. +..
T Consensus 663 ~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~~v~~~~L~lLVIDEahr--fG~ 736 (1147)
T PRK10689 663 QQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----SDVKWKDLGLLIVDEEHR--FGV 736 (1147)
T ss_pred HHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----CCCCHhhCCEEEEechhh--cch
Confidence 5554444332222222222222211100000 1123457788986432 222368899999999996 322
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccHHH--HH-chhCCCCeeeecCc-ccCCcccccCCCchhHHHHHHHHHHHHhhc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEAEK--FQ-GYFYGAPLMKVPGR-LHPVEIFYTQEPERDYLEAAIRTVVQIHMC 276 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~~~--~~-~~~~~~~~i~v~g~-~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~ 276 (573)
.. .+.++ ...++.++++||||+.... ++ ..+.+..++..+.. ..++++++........... .+..+
T Consensus 737 ~~-~e~lk---~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~---il~el--- 806 (1147)
T PRK10689 737 RH-KERIK---AMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREA---ILREI--- 806 (1147)
T ss_pred hH-HHHHH---hcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHH---HHHHH---
Confidence 22 23332 2334889999999975432 23 23334444443321 2355555433211111111 12222
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccc
Q 008221 277 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAE 356 (573)
Q Consensus 277 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae 356 (573)
...|+++||+|+.+.++.+++.|.+. .+++.+..+||+|++.+|.+++..|++|+ .+|||||+++|
T Consensus 807 ~r~gqv~vf~n~i~~ie~la~~L~~~-------~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk-------~~VLVaTdIie 872 (1147)
T PRK10689 807 LRGGQVYYLYNDVENIQKAAERLAEL-------VPEARIAIGHGQMRERELERVMNDFHHQR-------FNVLVCTTIIE 872 (1147)
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHh-------CCCCcEEEEeCCCCHHHHHHHHHHHHhcC-------CCEEEECchhh
Confidence 23578999999999999999999875 23678899999999999999999999998 89999999999
Q ss_pred cccccCCeEEEE-----cCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccch
Q 008221 357 TSLTIDGIVYVI-----DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTE 418 (573)
Q Consensus 357 ~gitI~~V~~VI-----d~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~ 418 (573)
+|||||+|++|| ++|+ ++|.||+||+||. +.|.||.++..
T Consensus 873 rGIDIP~v~~VIi~~ad~fgl----------------------aq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 873 TGIDIPTANTIIIERADHFGL----------------------AQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cccccccCCEEEEecCCCCCH----------------------HHHHHHhhccCCCCCceEEEEEeCC
Confidence 999999999999 5554 4699999999999 89999988754
No 61
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=9e-28 Score=268.89 Aligned_cols=303 Identities=16% Similarity=0.216 Sum_probs=204.3
Q ss_pred CCCChHHHHHHHHHHhcC------CEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHH
Q 008221 64 SLPVWQQKEEFLQVLKAN------QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVA 137 (573)
Q Consensus 64 ~lp~~~~q~~~i~~i~~g------~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (573)
-..+++.|+++++.|..+ ..++++|+||||||..+..+++.... . ..+.+.++||+.++.|.....+.+.
T Consensus 259 ~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-~---g~q~lilaPT~~LA~Q~~~~l~~l~ 334 (681)
T PRK10917 259 PFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-A---GYQAALMAPTEILAEQHYENLKKLL 334 (681)
T ss_pred CCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-c---CCeEEEEeccHHHHHHHHHHHHHHH
Confidence 346899999999999887 37899999999999988766654332 1 2345677777777666665555555
Q ss_pred Hhhhhcccchhceeeee------cccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHH
Q 008221 138 EEMDVTIGEEVGYSIRF------EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVL 211 (573)
Q Consensus 138 ~~~~~~~~~~vg~~~~~------~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~ 211 (573)
...+..++...|..... .........+.+.|++.++. ...+.+.+++|+||+|. ..... ...+ .
T Consensus 335 ~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hr--fg~~q-r~~l---~ 404 (681)
T PRK10917 335 EPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHR--FGVEQ-RLAL---R 404 (681)
T ss_pred hhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhh--hhHHH-HHHH---H
Confidence 55455554444432110 01112235677889887643 22378899999999996 32222 2222 2
Q ss_pred HhCCCcEEEEecccccHHHHH-chhCCCCeeee---cCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecC
Q 008221 212 KNRPDLKLVVMSATLEAEKFQ-GYFYGAPLMKV---PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLT 287 (573)
Q Consensus 212 ~~~~~~~iil~SATl~~~~~~-~~~~~~~~i~v---~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 287 (573)
......++++||||.....++ ..++...+..+ +....|++.++......+. ++..+.... ....+++||||
T Consensus 405 ~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~---~~~~i~~~~--~~g~q~~v~~~ 479 (681)
T PRK10917 405 EKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDE---VYERIREEI--AKGRQAYVVCP 479 (681)
T ss_pred hcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHHH---HHHHHHHHH--HcCCcEEEEEc
Confidence 222257899999998654433 23333222222 2223456666655433322 233333222 34568999999
Q ss_pred cH--------HHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccccc
Q 008221 288 GE--------EEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSL 359 (573)
Q Consensus 288 ~~--------~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gi 359 (573)
.. ..++.+++.|.+. .+++.+..+||+|++.+|+++++.|+.|. .+|||||+++|+|+
T Consensus 480 ~ie~s~~l~~~~~~~~~~~L~~~-------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~-------~~ILVaT~vie~Gi 545 (681)
T PRK10917 480 LIEESEKLDLQSAEETYEELQEA-------FPELRVGLLHGRMKPAEKDAVMAAFKAGE-------IDILVATTVIEVGV 545 (681)
T ss_pred ccccccchhHHHHHHHHHHHHHH-------CCCCcEEEEeCCCCHHHHHHHHHHHHcCC-------CCEEEECcceeeCc
Confidence 54 3455666666653 23478999999999999999999999998 89999999999999
Q ss_pred ccCCeEEEEcCCcccceeecccCCcccceeeec-cHhhHHHhccccCCC-CCCeEEeccc
Q 008221 360 TIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI-SKASAHQRSGRAGRT-QPGKCFRLYT 417 (573)
Q Consensus 360 tI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~-s~~~~~qR~GRaGR~-~~G~~~~l~t 417 (573)
|+|++++||+++. |- +.+++.||+||+||. .+|.||.+++
T Consensus 546 Dip~v~~VIi~~~------------------~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 546 DVPNATVMVIENA------------------ERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ccCCCcEEEEeCC------------------CCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999776 32 457888999999999 7999999986
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.95 E-value=1.6e-27 Score=265.07 Aligned_cols=314 Identities=16% Similarity=0.209 Sum_probs=202.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhcC------CEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccc
Q 008221 55 YYEILEKRKSLPVWQQKEEFLQVLKAN------QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVA 128 (573)
Q Consensus 55 ~~~~l~~~~~lp~~~~q~~~i~~i~~g------~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~ 128 (573)
..+.++...+ .+++.|+++++.|..+ ...+++|+||||||..+..+++.... . ..+.+.++||..++.|
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-~---g~qvlilaPT~~LA~Q 299 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-A---GYQVALMAPTEILAEQ 299 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-c---CCcEEEECCHHHHHHH
Confidence 3455566666 6899999999999876 25789999999999987665554322 1 1245666676666655
Q ss_pred cccHHHHHHHhhhhcccchhceeee------ecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHH
Q 008221 129 AMSVSRRVAEEMDVTIGEEVGYSIR------FEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDV 202 (573)
Q Consensus 129 ~~~v~~~v~~~~~~~~~~~vg~~~~------~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ 202 (573)
....+..+....+..+....|.... .......+..+.+.|++.++. ...+.+.+++|+||+|. .....
T Consensus 300 ~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~--fg~~q 373 (630)
T TIGR00643 300 HYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHR--FGVEQ 373 (630)
T ss_pred HHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhh--ccHHH
Confidence 5544444444334444333332110 001111234677889987653 22378899999999996 32222
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccHHHHHc-hhCCCC--ee-eecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCC
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEAEKFQG-YFYGAP--LM-KVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEP 278 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~~~~~~-~~~~~~--~i-~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~ 278 (573)
. ..+..........++++||||.....++. .++... .+ ..+....|+..++...... ..++..+.... ..
T Consensus 374 r-~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~l--~~ 447 (630)
T TIGR00643 374 R-KKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEK---DIVYEFIEEEI--AK 447 (630)
T ss_pred H-HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchH---HHHHHHHHHHH--Hh
Confidence 1 12222111111578999999975443331 222211 11 1222234666665543322 22333322211 24
Q ss_pred CCCEEEecCcHH--------HHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEE
Q 008221 279 SGDILVFLTGEE--------EIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (573)
Q Consensus 279 ~g~iLVFl~~~~--------~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvll 350 (573)
..+++||+|..+ .++.+++.|... .+++.+..+||+|++++|..+++.|+.|+ .+|||
T Consensus 448 g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~-------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~-------~~ILV 513 (630)
T TIGR00643 448 GRQAYVVYPLIEESEKLDLKAAEALYERLKKA-------FPKYNVGLLHGRMKSDEKEAVMEEFREGE-------VDILV 513 (630)
T ss_pred CCcEEEEEccccccccchHHHHHHHHHHHHhh-------CCCCcEEEEeCCCCHHHHHHHHHHHHcCC-------CCEEE
Confidence 568999999764 455566666543 24788999999999999999999999998 89999
Q ss_pred eecccccccccCCeEEEEcCCcccceeecccCCcccceeee-ccHhhHHHhccccCCC-CCCeEEeccc
Q 008221 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP-ISKASAHQRSGRAGRT-QPGKCFRLYT 417 (573)
Q Consensus 351 aT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p-~s~~~~~qR~GRaGR~-~~G~~~~l~t 417 (573)
||+++|+|||+|++++||.++. | -+.+++.||+|||||. .+|.||.++.
T Consensus 514 aT~vie~GvDiP~v~~VIi~~~------------------~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 514 ATTVIEVGVDVPNATVMVIEDA------------------ERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred ECceeecCcccCCCcEEEEeCC------------------CcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999999998776 3 2567899999999999 7999999983
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.95 E-value=4.4e-27 Score=240.79 Aligned_cols=438 Identities=19% Similarity=0.195 Sum_probs=289.4
Q ss_pred ccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHH-HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEE
Q 008221 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (573)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~-i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~ 120 (573)
..-+.+++.+++.+.++++.+|+....|+|.-.+++ +.+|++..|+.+|+||||..--.. |.. +. ...+..++
T Consensus 192 ~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElA---Gi~--~~-l~~g~Kml 265 (830)
T COG1202 192 ERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELA---GIP--RL-LSGGKKML 265 (830)
T ss_pred ccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhh---CcH--HH-HhCCCeEE
Confidence 345688999999999999999999999999887776 789999999999999999753211 110 00 00122344
Q ss_pred EecCcccccccHHHHHHHh---hhhcccchhceee-eec-----ccccccccccccCHHHHHHHHhcccccCCCcEEEEe
Q 008221 121 CTQPRRVAAMSVSRRVAEE---MDVTIGEEVGYSI-RFE-----DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLD 191 (573)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~---~~~~~~~~vg~~~-~~~-----~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILD 191 (573)
+..|+...+-+-.+.+... ++..+.-.||... +-. .....+..|.+.|..=.-.++-+...+.++.++|+|
T Consensus 266 fLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVID 345 (830)
T COG1202 266 FLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVID 345 (830)
T ss_pred EEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEee
Confidence 5555544444444444332 2333333444321 100 112234556666654333444445679999999999
Q ss_pred CCCcCcccH----HHHHHHHHHHHHhCCCcEEEEecccc-cHHHHHchhCCCCeeeecCcccCCcccccCCC-chhHHHH
Q 008221 192 EAHERTLAT----DVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEP-ERDYLEA 265 (573)
Q Consensus 192 Ea~~r~~~~----d~ll~~l~~l~~~~~~~~iil~SATl-~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~-~~~~~~~ 265 (573)
|+|. +.. ..+-.++.++....|+.|.|..|||. +.+.++.+++ ...+....++-|++-+..... ..++...
T Consensus 346 EiHt--L~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~~~e~eK~~i 422 (830)
T COG1202 346 EIHT--LEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFARNESEKWDI 422 (830)
T ss_pred eeee--ccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhC-CeeEeecCCCCChhHeeeeecCchHHHHH
Confidence 9983 221 22455666666667899999999999 7888999886 445556777777776655443 3333332
Q ss_pred HHHHHHHH----hhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCC
Q 008221 266 AIRTVVQI----HMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (573)
Q Consensus 266 ~~~~l~~i----~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (573)
....+..- ....-.|+.|||.+++..++.++..|... ++.+.|+|++|+..+|+.+-..|..+.
T Consensus 423 i~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k---------G~~a~pYHaGL~y~eRk~vE~~F~~q~--- 490 (830)
T COG1202 423 IARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK---------GLKAAPYHAGLPYKERKSVERAFAAQE--- 490 (830)
T ss_pred HHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC---------CcccccccCCCcHHHHHHHHHHHhcCC---
Confidence 22222211 12234689999999999999999999764 899999999999999999999999888
Q ss_pred CCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC---CCCeEEeccch
Q 008221 342 GPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTE 418 (573)
Q Consensus 342 ~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~---~~G~~~~l~t~ 418 (573)
..++|+|...+.|+|+|.-.+|.++=. +-..|.|..++.|..|||||. -.|++|-|...
T Consensus 491 ----l~~VVTTAAL~AGVDFPASQVIFEsLa--------------MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 491 ----LAAVVTTAALAAGVDFPASQVIFESLA--------------MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred ----cceEeehhhhhcCCCCchHHHHHHHHH--------------cccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 899999999999999997666655322 112399999999999999999 47999988654
Q ss_pred h-hhhhhcCCCChhhh----hccCchh------------HHHHHHHcCCCccc----ccc--CCCCCcHHHHHHHHHHHH
Q 008221 419 K-SFNNDLQPQTYPEI----LRSNLAN------------TVLTLKKLGIDDLV----HFD--FMDPPAPETLMRALEVLN 475 (573)
Q Consensus 419 ~-~~~~~~~~~~~pei----~r~~l~~------------~~L~~k~~~~~~~~----~~~--~~~pP~~~~~~~a~~~L~ 475 (573)
. .|...|.+.. -|+ +.++.+. -+|. ..|+.+-. ... .+-+ .-..+.+++.|.
T Consensus 553 g~~Y~~~m~~TE-devA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~~v~~~~~g~--~~~~~k~l~~Le 627 (830)
T COG1202 553 GKKYHASMEETE-DEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIERVNSLMLGA--AFDPKKALSKLE 627 (830)
T ss_pred ChhhcccccccH-HHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHhhcChhhccc--cCCHHHHHHHHH
Confidence 3 3433333221 111 1111111 1221 22222111 110 1110 112478999999
Q ss_pred HcCCccCCCC---cChhhhhhhcCCCChhhhhhhhhCCCCCCHHHHHHHHHhh
Q 008221 476 YLGALDDDGN---LTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAML 525 (573)
Q Consensus 476 ~lgald~~~~---lT~lG~~~~~lp~~p~~~~~l~~~~~~~c~~~~~~i~a~l 525 (573)
++|.++.+|+ +|+.|+.++.--+.|.-|..|..++ ..-.+| +-|++.+
T Consensus 628 e~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v-~~~~~p-l~i~~~l 678 (830)
T COG1202 628 EYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEFIREGV-LASMDP-LRIAAEL 678 (830)
T ss_pred hcCCeeccCCEeeeccccceeEEeecCchHHHHHHHhh-hccCCh-HhHhhcc
Confidence 9999998874 8999999999999999999998875 333344 3444444
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.95 E-value=4.3e-27 Score=246.13 Aligned_cols=292 Identities=17% Similarity=0.221 Sum_probs=176.2
Q ss_pred EEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhcee------ee---
Q 008221 83 VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYS------IR--- 153 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~------~~--- 153 (573)
+++|.||||||||+++..+++.... .. ....+++..|.+..+.+.++++....+..++...|.. ..
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~-~~----~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~ 75 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIK-SQ----KADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDS 75 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHh-hC----CCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCc
Confidence 4789999999999998887775322 11 1123444556665566666666554432222111100 00
Q ss_pred --ecc---------cccccccccccCHHHHHHHHhcc------cc-cCCCcEEEEeCCCcCccc-HHHHHHHHHHHHHhC
Q 008221 154 --FED---------CSSARTVLKYLTDGMLLREAMTD------PL-LERYKVIVLDEAHERTLA-TDVLFGLLKEVLKNR 214 (573)
Q Consensus 154 --~~~---------~~~~~~~i~~lT~G~l~r~~~~~------~l-l~~~~~lILDEa~~r~~~-~d~ll~~l~~l~~~~ 214 (573)
... .......+.++|++++...+... .+ ....+++|+||+|.-... ...+..+++.+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~-~- 153 (358)
T TIGR01587 76 EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK-D- 153 (358)
T ss_pred hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH-H-
Confidence 000 00113457788999988766551 01 223489999999963222 233444444443 2
Q ss_pred CCcEEEEecccccHHHHHchhCCCCeeeecC--cccC---C-ccccc--CCCchhHHHHHHHHHHHHhhcCCCCCEEEec
Q 008221 215 PDLKLVVMSATLEAEKFQGYFYGAPLMKVPG--RLHP---V-EIFYT--QEPERDYLEAAIRTVVQIHMCEPSGDILVFL 286 (573)
Q Consensus 215 ~~~~iil~SATl~~~~~~~~~~~~~~i~v~g--~~~~---v-~~~y~--~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl 286 (573)
.+.++++||||++. .+.+++.......... ...+ . .+.+. ......+.... ..+... ...++++|||+
T Consensus 154 ~~~~~i~~SATlp~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~--~~~~~~~lVf~ 229 (358)
T TIGR01587 154 NDVPILLMSATLPK-FLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSL-ERLLEF--IKKGGKIAIIV 229 (358)
T ss_pred cCCCEEEEecCchH-HHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHH-HHHHHH--hhCCCeEEEEE
Confidence 37899999999973 3344433221110000 0000 1 11111 11111111111 122221 13467999999
Q ss_pred CcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhh----hcCCCCCCCCCCCCCCceEEEeecccccccccC
Q 008221 287 TGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQK----IFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID 362 (573)
Q Consensus 287 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~----~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~ 362 (573)
+++++++.+++.|.+.. ....+..+||++++.+|.+ +++.|+.+. .+||||||++|+||||+
T Consensus 230 ~t~~~~~~~~~~L~~~~-------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~-------~~ilvaT~~~~~GiDi~ 295 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENA-------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNE-------KFVIVATQVIEASLDIS 295 (358)
T ss_pred CCHHHHHHHHHHHHhhc-------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCC-------CeEEEECcchhceeccC
Confidence 99999999999998641 2347999999999999866 488898887 89999999999999996
Q ss_pred CeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCC--C---CeEEeccchhh
Q 008221 363 GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ--P---GKCFRLYTEKS 420 (573)
Q Consensus 363 ~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~--~---G~~~~l~t~~~ 420 (573)
+++||++.. +.++|+||+||+||.+ . |.+|-++...+
T Consensus 296 -~~~vi~~~~--------------------~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 296 -ADVMITELA--------------------PIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred -CCEEEEcCC--------------------CHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 778887543 4679999999999982 2 36777766544
No 65
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=254.30 Aligned_cols=389 Identities=17% Similarity=0.173 Sum_probs=259.7
Q ss_pred CCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCC-ChhhcCceEEEEecCcccc
Q 008221 50 PYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIE-TPDRRRKMMIACTQPRRVA 128 (573)
Q Consensus 50 ~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~-~~~~~~~~~i~~t~p~~~~ 128 (573)
-|++++.+.+..+ +..+++.|.++++.|.+|++++|++|||||||.+.-.++++...-. ......++..+.-.|++..
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3678899999887 9999999999999999999999999999999997766665443211 1112234666666788777
Q ss_pred cccHHHHHH---Hhhhhcccchhceeeeeccccccc--ccccccCHHHHHHHHhccc---ccCCCcEEEEeCCCcCcccH
Q 008221 129 AMSVSRRVA---EEMDVTIGEEVGYSIRFEDCSSAR--TVLKYLTDGMLLREAMTDP---LLERYKVIVLDEAHERTLAT 200 (573)
Q Consensus 129 ~~~v~~~v~---~~~~~~~~~~vg~~~~~~~~~~~~--~~i~~lT~G~l~r~~~~~~---ll~~~~~lILDEa~~r~~~~ 200 (573)
+..+..|+. ..++..+....|.....+...... ..|...||+.++-++.... .+.+++++|+||.|+-..+.
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 777776663 344444422223222111111112 3456679999998887643 49999999999999632222
Q ss_pred HH--HHHHHHHHHHhCCCcEEEEecccc-cHHHHHchhCCC----CeeeecCc-ccCCcccccCCCc---hhHHHHHHHH
Q 008221 201 DV--LFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGA----PLMKVPGR-LHPVEIFYTQEPE---RDYLEAAIRT 269 (573)
Q Consensus 201 d~--ll~~l~~l~~~~~~~~iil~SATl-~~~~~~~~~~~~----~~i~v~g~-~~~v~~~y~~~~~---~~~~~~~~~~ 269 (573)
.. +.-.|.++....++.|-|..|||. +.+..++|+.+. .++.+.+. ...+++....... ..........
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~ 245 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYER 245 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHH
Confidence 11 222344444444478999999999 567788887643 44444432 2233333222110 1112234444
Q ss_pred HHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEE
Q 008221 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (573)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (573)
+..+.++ ...+|||.||+..++.++..|.+.. ...+...||+++.++|..+-+++++|. .|++
T Consensus 246 i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~--------~~~i~~HHgSlSre~R~~vE~~lk~G~-------lrav 308 (814)
T COG1201 246 IAELVKK--HRTTLIFTNTRSGAERLAFRLKKLG--------PDIIEVHHGSLSRELRLEVEERLKEGE-------LKAV 308 (814)
T ss_pred HHHHHhh--cCcEEEEEeChHHHHHHHHHHHHhc--------CCceeeecccccHHHHHHHHHHHhcCC-------ceEE
Confidence 5444433 3489999999999999999998752 367899999999999999999999998 8999
Q ss_pred EeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC----CCCeEEeccchhhhhhh-
Q 008221 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT----QPGKCFRLYTEKSFNND- 424 (573)
Q Consensus 350 laT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~----~~G~~~~l~t~~~~~~~- 424 (573)
|||.-.|-||||.+|+.||+++= |.|.+...||+||+|+- ..|..|... ..+..++
T Consensus 309 V~TSSLELGIDiG~vdlVIq~~S------------------P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~-r~dllE~~ 369 (814)
T COG1201 309 VATSSLELGIDIGDIDLVIQLGS------------------PKSVNRFLQRIGRAGHRLGEVSKGIIIAED-RDDLLECL 369 (814)
T ss_pred EEccchhhccccCCceEEEEeCC------------------cHHHHHHhHhccccccccCCcccEEEEecC-HHHHHHHH
Confidence 99999999999999999999987 99999999999999976 457666654 2222111
Q ss_pred -------cCCCChhhhhccCchhHHHHHHHcCCCc------ccc-----ccCCCCCcHHHHHHHHHHHHH
Q 008221 425 -------LQPQTYPEILRSNLANTVLTLKKLGIDD------LVH-----FDFMDPPAPETLMRALEVLNY 476 (573)
Q Consensus 425 -------~~~~~~pei~r~~l~~~~L~~k~~~~~~------~~~-----~~~~~pP~~~~~~~a~~~L~~ 476 (573)
-.....+++..-+|+-+.-++-.+-+.. ... ++|-+= +.+..++.++.|..
T Consensus 370 vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy~~L-~~e~f~~v~~~l~~ 438 (814)
T COG1201 370 VLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPYADL-SREDFRLVLRYLAG 438 (814)
T ss_pred HHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhccccccC-CHHHHHHHHHHHhh
Confidence 1123345666667766555544332211 111 123221 44567777777777
No 66
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.94 E-value=9.8e-27 Score=270.95 Aligned_cols=297 Identities=18% Similarity=0.185 Sum_probs=182.1
Q ss_pred EEcCCCCchhhhhhhhhhcCccCCC------hhhcCceEEEEecCcccccccHHHHHHH---h------------hhhcc
Q 008221 86 LVGETGSGKTTQIPQFVLEGVDIET------PDRRRKMMIACTQPRRVAAMSVSRRVAE---E------------MDVTI 144 (573)
Q Consensus 86 i~G~tGSGKTT~l~~~ll~~~~~~~------~~~~~~~~i~~t~p~~~~~~~v~~~v~~---~------------~~~~~ 144 (573)
|++|||||||.++-.++++...... ......+.+++..|.+..+..+.+++.. . .+..+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999988876665432110 0001122333334444444444444422 1 11222
Q ss_pred cchhceeeeeccc--ccccccccccCHHHHHHHHhcc--cccCCCcEEEEeCCCcCcccHH---HHHHHHHHHHHhC-CC
Q 008221 145 GEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTD--PLLERYKVIVLDEAHERTLATD---VLFGLLKEVLKNR-PD 216 (573)
Q Consensus 145 ~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~--~ll~~~~~lILDEa~~r~~~~d---~ll~~l~~l~~~~-~~ 216 (573)
+...|.....+.. ......|.+.||+.+..++..+ ..+.++++||+||+|.- ...+ .+...+.++.... .+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L-~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAV-AGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHh-cccccccHHHHHHHHHHHhCCCC
Confidence 2222211111110 1113467889999998776543 35999999999999962 2221 2333444443332 26
Q ss_pred cEEEEecccc-cHHHHHchhCCC-Ceeeec-C--cccCCcccccCCCchhH----------------H----HHHHHHHH
Q 008221 217 LKLVVMSATL-EAEKFQGYFYGA-PLMKVP-G--RLHPVEIFYTQEPERDY----------------L----EAAIRTVV 271 (573)
Q Consensus 217 ~~iil~SATl-~~~~~~~~~~~~-~~i~v~-g--~~~~v~~~y~~~~~~~~----------------~----~~~~~~l~ 271 (573)
.|+|.+|||+ +.+.+++|+.+. ++..+. . +..+++++ .+...... . ......++
T Consensus 160 ~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il 238 (1490)
T PRK09751 160 AQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGIL 238 (1490)
T ss_pred CeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHHH
Confidence 8999999999 467788888643 332222 1 11223222 11111000 0 00111122
Q ss_pred HHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcC------------------------CCCCCeEEEEecCCCCHHHH
Q 008221 272 QIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMG------------------------DQVGPVKVVPLYSTLPPAMQ 327 (573)
Q Consensus 272 ~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~------------------------~~~~~~~v~~lh~~l~~~~r 327 (573)
... ...+++|||+||+..++.++..|.+...... .....+.+..+||+|++++|
T Consensus 239 ~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 239 DEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 111 2356899999999999999999976431100 00012347789999999999
Q ss_pred hhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC
Q 008221 328 QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT 407 (573)
Q Consensus 328 ~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~ 407 (573)
..+.+.|++|. .+|||||+.+|+||||++|++||++|. |.|.++|+||+|||||.
T Consensus 317 ~~IE~~fK~G~-------LrvLVATssLELGIDIg~VDlVIq~gs------------------P~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 317 AITEQALKSGE-------LRCVVATSSLELGIDMGAVDLVIQVAT------------------PLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHHHHHHHhCC-------ceEEEeCcHHHccCCcccCCEEEEeCC------------------CCCHHHHHHHhCCCCCC
Confidence 99999999999 899999999999999999999999998 99999999999999997
Q ss_pred CCCe
Q 008221 408 QPGK 411 (573)
Q Consensus 408 ~~G~ 411 (573)
..|.
T Consensus 372 ~gg~ 375 (1490)
T PRK09751 372 VGGV 375 (1490)
T ss_pred CCCc
Confidence 4333
No 67
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.94 E-value=6.9e-26 Score=235.56 Aligned_cols=288 Identities=15% Similarity=0.194 Sum_probs=173.3
Q ss_pred HHHHHHHHHhcCC--EEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhh----hhc
Q 008221 70 QKEEFLQVLKANQ--VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM----DVT 143 (573)
Q Consensus 70 ~q~~~i~~i~~g~--~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~----~~~ 143 (573)
+|.++++++.+++ ++++.+|||||||.++-.+++... .+.+.++|++.+..+.....+.+...+ +..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~-------~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGE-------NDTIALYPTNALIEDQTEAIKEFVDVFKPERDVN 73 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcC-------CCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 5889999998887 478899999999998877666432 124566666554433222222222111 111
Q ss_pred ccchhceeee----ec---------c--------cccccccccccCHHHHHHHHhccc----------ccCCCcEEEEeC
Q 008221 144 IGEEVGYSIR----FE---------D--------CSSARTVLKYLTDGMLLREAMTDP----------LLERYKVIVLDE 192 (573)
Q Consensus 144 ~~~~vg~~~~----~~---------~--------~~~~~~~i~~lT~G~l~r~~~~~~----------ll~~~~~lILDE 192 (573)
+....|.... .. . ..........+|+...+..++... ++.+++++|+||
T Consensus 74 v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE 153 (357)
T TIGR03158 74 LLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDE 153 (357)
T ss_pred EEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEec
Confidence 1111111000 00 0 000113444566554444443221 367899999999
Q ss_pred CCcCcccHH-HHH---HHHHHHHHhCCCcEEEEecccccHHH---HHch-hCCCCeeeecCc--cc--------------
Q 008221 193 AHERTLATD-VLF---GLLKEVLKNRPDLKLVVMSATLEAEK---FQGY-FYGAPLMKVPGR--LH-------------- 248 (573)
Q Consensus 193 a~~r~~~~d-~ll---~~l~~l~~~~~~~~iil~SATl~~~~---~~~~-~~~~~~i~v~g~--~~-------------- 248 (573)
+|.-..... .++ .....+.....+.+++++|||++... +.+. +.+.+++.+.|. .+
T Consensus 154 ~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~ 233 (357)
T TIGR03158 154 FHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQS 233 (357)
T ss_pred ccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccc
Confidence 997443221 111 22222221112579999999997542 2232 134567777776 11
Q ss_pred ------CCcccccCCCc--hhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecC
Q 008221 249 ------PVEIFYTQEPE--RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYS 320 (573)
Q Consensus 249 ------~v~~~y~~~~~--~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~ 320 (573)
++++.+..... ...+....+.+.......+.+++|||++++..++.+++.|.+. ..++.+..+||
T Consensus 234 ~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~-------~~~~~~~~l~g 306 (357)
T TIGR03158 234 FRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ-------GLGDDIGRITG 306 (357)
T ss_pred cceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh-------CCCceEEeeec
Confidence 34444433211 1122223333333333345678999999999999999999863 11467889999
Q ss_pred CCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHh
Q 008221 321 TLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQR 400 (573)
Q Consensus 321 ~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR 400 (573)
.+++.+|.++. + ..|+||||++|||||||++.+|++ |.+.++|+||
T Consensus 307 ~~~~~~R~~~~------~-------~~iLVaTdv~~rGiDi~~~~vi~~---------------------p~~~~~yiqR 352 (357)
T TIGR03158 307 FAPKKDRERAM------Q-------FDILLGTSTVDVGVDFKRDWLIFS---------------------ARDAAAFWQR 352 (357)
T ss_pred CCCHHHHHHhc------c-------CCEEEEecHHhcccCCCCceEEEC---------------------CCCHHHHhhh
Confidence 99999997764 2 589999999999999999844432 6788999999
Q ss_pred ccccC
Q 008221 401 SGRAG 405 (573)
Q Consensus 401 ~GRaG 405 (573)
+||||
T Consensus 353 ~GR~g 357 (357)
T TIGR03158 353 LGRLG 357 (357)
T ss_pred cccCC
Confidence 99998
No 68
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=4.9e-26 Score=264.37 Aligned_cols=293 Identities=15% Similarity=0.125 Sum_probs=190.0
Q ss_pred CCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcc
Q 008221 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (573)
Q Consensus 65 lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (573)
..++++|.++++.+..|+++++++|||||||+.+. ++..... ....+.++++||+++..|.....+.++...+..+
T Consensus 79 ~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l-~~~~~l~---~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~ 154 (1176)
T PRK09401 79 SKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGL-VMSLYLA---KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGV 154 (1176)
T ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHH-HHHHHHH---hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceE
Confidence 38999999999999999999999999999997433 2211111 1123567888888888887777777666544433
Q ss_pred cchhceee-e---ec----ccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCccc-----------H----
Q 008221 145 GEEVGYSI-R---FE----DCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA-----------T---- 200 (573)
Q Consensus 145 ~~~vg~~~-~---~~----~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~-----------~---- 200 (573)
....|... . .. ........|.+.|+|++.+... .+ ..+++++|+||||. .+. .
T Consensus 155 ~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~-~L~~~k~id~~l~~lGF~~ 231 (1176)
T PRK09401 155 KILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDA-VLKSSKNIDKLLYLLGFSE 231 (1176)
T ss_pred EEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHH-hhhcccchhhHHHhCCCCH
Confidence 32222210 0 00 0011235788999999988754 23 45699999999994 221 0
Q ss_pred HHHHHHHHH----------------HHHh-----CCCcEEEEecccccHHHHH-chhCCCCeeeecC---cccCCccccc
Q 008221 201 DVLFGLLKE----------------VLKN-----RPDLKLVVMSATLEAEKFQ-GYFYGAPLMKVPG---RLHPVEIFYT 255 (573)
Q Consensus 201 d~ll~~l~~----------------l~~~-----~~~~~iil~SATl~~~~~~-~~~~~~~~i~v~g---~~~~v~~~y~ 255 (573)
+.+..+++. +..+ ..+.+++++|||+...... ..|.+.-.+.+.. ...++.+.|.
T Consensus 232 ~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi 311 (1176)
T PRK09401 232 EDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYI 311 (1176)
T ss_pred HHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEE
Confidence 111111111 1110 1157899999999743211 1222221233322 2245777776
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHH---HHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcC
Q 008221 256 QEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEE---IEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFE 332 (573)
Q Consensus 256 ~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~---i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~ 332 (573)
... ++...+...+ ... +..+|||++++.. ++.+++.|... ++.+..+||+| .+.++
T Consensus 312 ~~~--~k~~~L~~ll----~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~---------gi~v~~~hg~l-----~~~l~ 370 (1176)
T PRK09401 312 VDE--DSVEKLVELV----KRL-GDGGLIFVPSDKGKEYAEELAEYLEDL---------GINAELAISGF-----ERKFE 370 (1176)
T ss_pred Ecc--cHHHHHHHHH----Hhc-CCCEEEEEecccChHHHHHHHHHHHHC---------CCcEEEEeCcH-----HHHHH
Confidence 544 3333322222 212 2468999999777 99999999875 89999999999 23459
Q ss_pred CCCCCCCCCCCCCceEEEe----ecccccccccCC-eEEEEcCCcccceeecccCCcccceeeec-cHhhHHHhccccC
Q 008221 333 PAPPPSKEGGPPGRKIVVS----TNIAETSLTIDG-IVYVIDPGFAKQKVYNPRVRVESLLVSPI-SKASAHQRSGRAG 405 (573)
Q Consensus 333 ~~~~g~~~~~~~~~kvlla----T~iae~gitI~~-V~~VId~g~~k~~~~d~~~~~~~l~~~p~-s~~~~~qR~GRaG 405 (573)
.|++|+ .+|||| ||+|+||||||+ |+|||+||+-+.+. ++ ..+.+.||.||+-
T Consensus 371 ~F~~G~-------~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~-------------~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 371 KFEEGE-------VDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKF-------------SLEEELAPPFLLLRLL 429 (1176)
T ss_pred HHHCCC-------CCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEE-------------eccccccCHHHHHHHH
Confidence 999998 899999 699999999999 89999999933221 11 4577899999994
No 69
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=8.2e-25 Score=232.83 Aligned_cols=310 Identities=15% Similarity=0.171 Sum_probs=202.3
Q ss_pred hcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhh--hhcCccCCChhhcCceEEEEecCcccccccHHHHHHHh
Q 008221 62 RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQF--VLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 62 ~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~--ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.|+-.-.+-|+++|+.+.+|++++++=|||.|||..+..+ +.+|. .++|.| +...-....+.+ ..
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~---------TLVVSP---LiSLM~DQV~~l-~~ 79 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGL---------TLVVSP---LISLMKDQVDQL-EA 79 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCC---------EEEECc---hHHHHHHHHHHH-HH
Confidence 3555556668999999999999999999999999966544 33321 233322 211101111111 01
Q ss_pred hhhcccchhceee------eecccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcccHHHH---HHHHHH
Q 008221 140 MDVTIGEEVGYSI------RFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVL---FGLLKE 209 (573)
Q Consensus 140 ~~~~~~~~vg~~~------~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~~d~l---l~~l~~ 209 (573)
.|......-.... .........-.+.|+||.++..-.....+ -.....+++||||.-+.+...| +..+..
T Consensus 80 ~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~ 159 (590)
T COG0514 80 AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGR 159 (590)
T ss_pred cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHH
Confidence 1111000000000 00001111235667777766543332222 5577899999999755554444 334444
Q ss_pred HHHhCCCcEEEEecccccHHH---HHchhC-CCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEe
Q 008221 210 VLKNRPDLKLVVMSATLEAEK---FQGYFY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVF 285 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~~~---~~~~~~-~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF 285 (573)
+....|+..++.+|||.+... +...+. +.+.+.+.+...| .++|...+..+-..... .+.. ......+..|||
T Consensus 160 l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp-Ni~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GIIY 236 (590)
T COG0514 160 LRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRP-NLALKVVEKGEPSDQLA-FLAT-VLPQLSKSGIIY 236 (590)
T ss_pred HHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCc-hhhhhhhhcccHHHHHH-HHHh-hccccCCCeEEE
Confidence 555567889999999987533 333332 3333333322111 23333222211111111 2221 123456678999
Q ss_pred cCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeE
Q 008221 286 LTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIV 365 (573)
Q Consensus 286 l~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~ 365 (573)
|.|+.+++.+++.|... ++.+..+||+|+.++|..+.+.|.++. .+|+|||+...-|||-|||+
T Consensus 237 c~sRk~~E~ia~~L~~~---------g~~a~~YHaGl~~~eR~~~q~~f~~~~-------~~iiVAT~AFGMGIdKpdVR 300 (590)
T COG0514 237 CLTRKKVEELAEWLRKN---------GISAGAYHAGLSNEERERVQQAFLNDE-------IKVMVATNAFGMGIDKPDVR 300 (590)
T ss_pred EeeHHhHHHHHHHHHHC---------CCceEEecCCCCHHHHHHHHHHHhcCC-------CcEEEEeccccCccCCCCce
Confidence 99999999999999874 899999999999999999999999988 89999999999999999999
Q ss_pred EEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 366 YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 366 ~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
+||++++ |.|.++|.|-+|||||. .+-.|+.||+..+.
T Consensus 301 fViH~~l------------------P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 301 FVIHYDL------------------PGSIESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred EEEEecC------------------CCCHHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 9999999 99999999999999999 89999999998875
No 70
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=3.9e-25 Score=206.01 Aligned_cols=307 Identities=17% Similarity=0.218 Sum_probs=222.2
Q ss_pred CccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEec
Q 008221 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (573)
.-|.++-|.+++++++-..|+..|+.+|.+.||..--|-+++..+.+|-|||..|....++... +..+....++++-++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie-pv~g~vsvlvmchtr 120 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE-PVDGQVSVLVMCHTR 120 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC-CCCCeEEEEEEeccH
Confidence 4588888999999999999999999999999999999999999999999999998877776655 222223345566678
Q ss_pred CcccccccHHHHHHHhhh-hcccchhc-eeeeeccccc-ccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCccc
Q 008221 124 PRRVAAMSVSRRVAEEMD-VTIGEEVG-YSIRFEDCSS-ARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (573)
Q Consensus 124 p~~~~~~~v~~~v~~~~~-~~~~~~vg-~~~~~~~~~~-~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~ 199 (573)
+++.++..-++++++.+. ..+.-..| ..+..+.... .-..|.+.|||+++.+...+.+ +.+++++||||+|. ++.
T Consensus 121 elafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk-mle 199 (387)
T KOG0329|consen 121 ELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK-MLE 199 (387)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH-HHH
Confidence 888888888888887663 23333333 2222221111 1245678899999998888887 99999999999984 344
Q ss_pred HHHHHHHHHHHHHhCC-CcEEEEecccccHH--HHHchhCCCCe-eeecC----cccCCcccccCCCchhHHHHHHHHHH
Q 008221 200 TDVLFGLLKEVLKNRP-DLKLVVMSATLEAE--KFQGYFYGAPL-MKVPG----RLHPVEIFYTQEPERDYLEAAIRTVV 271 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~-~~~iil~SATl~~~--~~~~~~~~~~~-i~v~g----~~~~v~~~y~~~~~~~~~~~~~~~l~ 271 (573)
.-.+...+.++.+..| +.|+++||||++.+ ..+..|...|+ +-+.. ..|..+++|....+..+.....+.+-
T Consensus 200 ~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd 279 (387)
T KOG0329|consen 200 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLD 279 (387)
T ss_pred HHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhh
Confidence 4455566666665555 88999999999654 46666655554 33322 25678888877654444332222221
Q ss_pred HHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEe
Q 008221 272 QIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS 351 (573)
Q Consensus 272 ~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlla 351 (573)
. -+-.+++||+.+... | + |+ ++ ++|
T Consensus 280 ~----LeFNQVvIFvKsv~R-------l-----------------------~-------f~-------------kr-~va 304 (387)
T KOG0329|consen 280 V----LEFNQVVIFVKSVQR-------L-----------------------S-------FQ-------------KR-LVA 304 (387)
T ss_pred h----hhhcceeEeeehhhh-------h-----------------------h-------hh-------------hh-hHH
Confidence 1 233478888866432 0 0 11 34 999
Q ss_pred ecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhhhhhc
Q 008221 352 TNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNNDL 425 (573)
Q Consensus 352 T~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~~~~ 425 (573)
||+..||+||..|..|+|||+ |-+..+|.||.|||||. ..|.++.+.+.+.-...+
T Consensus 305 t~lfgrgmdiervNi~~NYdm------------------p~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iL 361 (387)
T KOG0329|consen 305 TDLFGRGMDIERVNIVFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKIL 361 (387)
T ss_pred hhhhccccCcccceeeeccCC------------------CCCchHHHHHhhhhhccccccceeehhcchhhHHHh
Confidence 999999999999999999999 99999999999999999 789999998876553333
No 71
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=233.85 Aligned_cols=434 Identities=23% Similarity=0.307 Sum_probs=263.7
Q ss_pred CCCChHHHHHHHHhcCCCChHHHHHHHHH-HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCccc
Q 008221 49 KPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRV 127 (573)
Q Consensus 49 ~~l~~~~~~~l~~~~~lp~~~~q~~~i~~-i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~ 127 (573)
..+..++.+.++..++-..++.|++.+.. +.++++++|++|||||||...-..++.... .. +..++..-|.+.
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~-~~-----~~k~vYivPlkA 87 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLL-EG-----GGKVVYIVPLKA 87 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHH-hc-----CCcEEEEeChHH
Confidence 34677888888877776666666555555 555699999999999999987766654432 11 122334445555
Q ss_pred ccccHHHHHH--HhhhhcccchhceeeeecccccccccccccCHHHHHHHHhccc-ccCCCcEEEEeCCCcCccc-HH-H
Q 008221 128 AAMSVSRRVA--EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLA-TD-V 202 (573)
Q Consensus 128 ~~~~v~~~v~--~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lILDEa~~r~~~-~d-~ 202 (573)
.+...++.+. +..+.+++...|-.. ........+.|.+.|+-.+--..-... ++.+++++|+||+|.-... .+ .
T Consensus 88 La~Ek~~~~~~~~~~GirV~~~TgD~~-~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~ 166 (766)
T COG1204 88 LAEEKYEEFSRLEELGIRVGISTGDYD-LDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPV 166 (766)
T ss_pred HHHHHHHHhhhHHhcCCEEEEecCCcc-cchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCce
Confidence 5555666665 445555555444221 111112345676777654432222222 5889999999999962222 22 2
Q ss_pred HHHHHHHHHHhCCCcEEEEecccc-cHHHHHchhCCCCeeeecCcc-------cCCcccccCC-Cch----hHHHHHHHH
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRL-------HPVEIFYTQE-PER----DYLEAAIRT 269 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl-~~~~~~~~~~~~~~i~v~g~~-------~~v~~~y~~~-~~~----~~~~~~~~~ 269 (573)
+..++.+.....+..+++-.|||+ +...+++|++..++ ...-+. +....++... ... ..-......
T Consensus 167 lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~ 245 (766)
T COG1204 167 LESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALEL 245 (766)
T ss_pred ehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHH
Confidence 444555555544468999999999 57889998875544 111111 1111111111 111 111222233
Q ss_pred HHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhc---------CCCCCC-------------------eEEEEecCC
Q 008221 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNM---------GDQVGP-------------------VKVVPLYST 321 (573)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~---------~~~~~~-------------------~~v~~lh~~ 321 (573)
+...+ ...|++|||++++.+....++.|....... ...... .-+...|++
T Consensus 246 v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAG 323 (766)
T COG1204 246 VLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAG 323 (766)
T ss_pred HHHHH--hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccC
Confidence 32222 457899999999999999999998421110 000111 125678999
Q ss_pred CCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhc
Q 008221 322 LPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRS 401 (573)
Q Consensus 322 l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~ 401 (573)
|+.++|.-+-+.|+.|. .|||+||+..+.|++.|.-+.|| ....+|||..+ ..+++.-+++|..
T Consensus 324 L~~~~R~~vE~~Fr~g~-------ikVlv~TpTLA~GVNLPA~~VII----k~~~~y~~~~g-----~~~i~~~dv~QM~ 387 (766)
T COG1204 324 LPREDRQLVEDAFRKGK-------IKVLVSTPTLAAGVNLPARTVII----KDTRRYDPKGG-----IVDIPVLDVLQMA 387 (766)
T ss_pred CCHHHHHHHHHHHhcCC-------ceEEEechHHhhhcCCcceEEEE----eeeEEEcCCCC-----eEECchhhHhhcc
Confidence 99999999999999999 99999999999999999777777 45577888333 3499999999999
Q ss_pred cccCCC---CCCeEEecc-chh--hhhhhcCCCChhhhhccCc------hhHHHHHHHcCCCcccc------c---cCCC
Q 008221 402 GRAGRT---QPGKCFRLY-TEK--SFNNDLQPQTYPEILRSNL------ANTVLTLKKLGIDDLVH------F---DFMD 460 (573)
Q Consensus 402 GRaGR~---~~G~~~~l~-t~~--~~~~~~~~~~~pei~r~~l------~~~~L~~k~~~~~~~~~------~---~~~~ 460 (573)
|||||. .-|..+.+. +.. ++.........||...+.| ...++.+.+.| +... | -|..
T Consensus 388 GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~--~~v~~~~~~~f~~~t~~~ 465 (766)
T COG1204 388 GRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVG--DAVSWLELTDFYERTFYN 465 (766)
T ss_pred CcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEecc--chhhHHHHHHHHHHHHhh
Confidence 999999 345555444 221 1212222333344311111 11111111111 1000 0 0001
Q ss_pred C------CcHHHHHHHHHHHHHcC-CccCCC---CcChhhhhhhcCCCChhhhhhhhhCC
Q 008221 461 P------PAPETLMRALEVLNYLG-ALDDDG---NLTEMGEKMSEFPLDPQMSKMLVESP 510 (573)
Q Consensus 461 p------P~~~~~~~a~~~L~~lg-ald~~~---~lT~lG~~~~~lp~~p~~~~~l~~~~ 510 (573)
| -....+.+++..|.+.+ .++... ..|++|+.+++++++|..++.+....
T Consensus 466 ~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l 525 (766)
T COG1204 466 PQTYGEGMLREEILASLRYLEENGLILDADWEALHATELGKLVSRLYIDPESAKIFRDLL 525 (766)
T ss_pred hhhccccchHHHHHHHHHHHHhccceeeccccccchhHHHHHhhhccCCHHHHHHHHHHH
Confidence 1 13456788999999986 666543 47999999999999999999986654
No 72
>PRK14701 reverse gyrase; Provisional
Probab=99.91 E-value=1.5e-24 Score=257.05 Aligned_cols=329 Identities=13% Similarity=0.084 Sum_probs=201.8
Q ss_pred HHHHHHHH-hcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccH
Q 008221 54 RYYEILEK-RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSV 132 (573)
Q Consensus 54 ~~~~~l~~-~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v 132 (573)
++.+.+++ .|+ .++++|.++++.+.+|+++++++|||||||+.+..+.+... ....+.++++||.++..|....
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~----~~g~~aLVl~PTreLa~Qi~~~ 141 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA----LKGKKCYIILPTTLLVKQTVEK 141 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH----hcCCeEEEEECHHHHHHHHHHH
Confidence 34445554 678 69999999999999999999999999999993222111110 0113467788888888777776
Q ss_pred HHHHHHhhhhc--ccchhceeeeec------ccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcc------
Q 008221 133 SRRVAEEMDVT--IGEEVGYSIRFE------DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTL------ 198 (573)
Q Consensus 133 ~~~v~~~~~~~--~~~~vg~~~~~~------~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~------ 198 (573)
.+.++...+.. +....|.....+ ........|.+.|+|++.+..... ...+++++|+||||.-.-
T Consensus 142 l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 142 IESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-KHLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-hhCCCCEEEEECceeccccccccc
Confidence 66665544321 111112110000 011123567889999887754432 236789999999995211
Q ss_pred ---c-HHHHHH-------HHH------------------HHHHhCC-CcE-EEEecccccHH-HHHchhCCCCeeeecCc
Q 008221 199 ---A-TDVLFG-------LLK------------------EVLKNRP-DLK-LVVMSATLEAE-KFQGYFYGAPLMKVPGR 246 (573)
Q Consensus 199 ---~-~d~ll~-------~l~------------------~l~~~~~-~~~-iil~SATl~~~-~~~~~~~~~~~i~v~g~ 246 (573)
. .++--+ +++ ......+ ..+ ++++|||+... .....|.+.-.+.+...
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~ 300 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSG 300 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCC
Confidence 0 111111 111 1111112 334 67899999742 33344444333444322
Q ss_pred ---ccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHH---HHHHHHHHHHHhhcCCCCCCeEEEEecC
Q 008221 247 ---LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEI---EDACRKITKEITNMGDQVGPVKVVPLYS 320 (573)
Q Consensus 247 ---~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i---~~~~~~L~~~~~~~~~~~~~~~v~~lh~ 320 (573)
...+.+.|......++ ..+. .+.... ....||||+++..+ +.+++.|... ++.+..+||
T Consensus 301 ~~~lr~i~~~yi~~~~~~k-~~L~----~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~---------Gi~a~~~h~ 365 (1638)
T PRK14701 301 RSALRNIVDVYLNPEKIIK-EHVR----ELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED---------GFKIELVSA 365 (1638)
T ss_pred CCCCCCcEEEEEECCHHHH-HHHH----HHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC---------CCeEEEecc
Confidence 2346667764433322 2222 222222 34689999998865 7888888864 899999999
Q ss_pred CCCHHHHhhhcCCCCCCCCCCCCCCceEEEee----cccccccccCC-eEEEEcCCccccee----ecccCCcccceeee
Q 008221 321 TLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST----NIAETSLTIDG-IVYVIDPGFAKQKV----YNPRVRVESLLVSP 391 (573)
Q Consensus 321 ~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT----~iae~gitI~~-V~~VId~g~~k~~~----~d~~~~~~~l~~~p 391 (573)
+ |.++++.|++|. .+||||| |+|+||||+|+ |+|||++|+-|.+. |.+.... + +
T Consensus 366 ~-----R~~~l~~F~~G~-------~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~--~---~ 428 (1638)
T PRK14701 366 K-----NKKGFDLFEEGE-------IDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR--I---L 428 (1638)
T ss_pred h-----HHHHHHHHHcCC-------CCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh--h---h
Confidence 5 888999999999 8999999 69999999999 99999999955321 1111100 0 0
Q ss_pred ccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 392 ISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 392 ~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
. .....++.||+||. .++.|+..+..++.
T Consensus 429 ~-~~~~~~~~~~a~~~g~~~~~~~~~~~~~~ 458 (1638)
T PRK14701 429 G-LLSEILKIEEELKEGIPIEGVLDVFPEDV 458 (1638)
T ss_pred c-chHHHHHhhhhcccCCcchhHHHhHHHHH
Confidence 0 22344566999998 67778755555544
No 73
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=2.4e-23 Score=225.84 Aligned_cols=123 Identities=20% Similarity=0.175 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCC
Q 008221 261 DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKE 340 (573)
Q Consensus 261 ~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~ 340 (573)
++...++..+...+. .+.++|||++++.+++.++..|.+. ++.+..|||++.+.++..+...+. .
T Consensus 457 ~K~~aL~~~i~~~~~--~~~pvLIft~t~~~se~L~~~L~~~---------gi~~~~Lhg~~~~rE~~ii~~ag~--~-- 521 (656)
T PRK12898 457 AKWAAVAARVRELHA--QGRPVLVGTRSVAASERLSALLREA---------GLPHQVLNAKQDAEEAAIVARAGQ--R-- 521 (656)
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEeeCCcHHHHHHHHHHcCC--C--
Confidence 344444444443332 3457999999999999999999875 889999999977665554444433 2
Q ss_pred CCCCCceEEEeecccccccccC---CeE-----EEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCe
Q 008221 341 GGPPGRKIVVSTNIAETSLTID---GIV-----YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGK 411 (573)
Q Consensus 341 ~~~~~~kvllaT~iae~gitI~---~V~-----~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~ 411 (573)
.+|+||||+|+||+||+ +|. |||++++ |.|...|.||+|||||. .+|.
T Consensus 522 -----g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~------------------P~s~r~y~hr~GRTGRqG~~G~ 578 (656)
T PRK12898 522 -----GRITVATNMAGRGTDIKLEPGVAARGGLHVILTER------------------HDSARIDRQLAGRCGRQGDPGS 578 (656)
T ss_pred -----CcEEEEccchhcccCcCCccchhhcCCCEEEEcCC------------------CCCHHHHHHhcccccCCCCCeE
Confidence 46999999999999999 777 9999999 99999999999999999 7999
Q ss_pred EEeccchhhh
Q 008221 412 CFRLYTEKSF 421 (573)
Q Consensus 412 ~~~l~t~~~~ 421 (573)
|+.+++.++.
T Consensus 579 s~~~is~eD~ 588 (656)
T PRK12898 579 YEAILSLEDD 588 (656)
T ss_pred EEEEechhHH
Confidence 9999997653
No 74
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.90 E-value=2.7e-24 Score=213.55 Aligned_cols=226 Identities=20% Similarity=0.238 Sum_probs=155.8
Q ss_pred cccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcC--cccHHHHHHHHHHHHH---hCCCcEEEEeccccc---HHHH
Q 008221 161 RTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHER--TLATDVLFGLLKEVLK---NRPDLKLVVMSATLE---AEKF 231 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r--~~~~d~ll~~l~~l~~---~~~~~~iil~SATl~---~~~~ 231 (573)
.+.|.+.|+|++........+ +.++.++++||++.- ....|.+..+-.++.+ .-..++.++.|||+. +..+
T Consensus 339 g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~ 418 (725)
T KOG0349|consen 339 GTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKV 418 (725)
T ss_pred CceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeeh
Confidence 467888999999988766554 899999999998741 1234444444444333 212578999999985 3334
Q ss_pred HchhCCCC-eeeecCc------ccCCcc--------------------------cccCC-CchhHHHHHHHHHH-----H
Q 008221 232 QGYFYGAP-LMKVPGR------LHPVEI--------------------------FYTQE-PERDYLEAAIRTVV-----Q 272 (573)
Q Consensus 232 ~~~~~~~~-~i~v~g~------~~~v~~--------------------------~y~~~-~~~~~~~~~~~~l~-----~ 272 (573)
......-| -+...|. .|.|-. +..+. ...+...++..++. .
T Consensus 419 ~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ 498 (725)
T KOG0349|consen 419 GERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVV 498 (725)
T ss_pred hhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhh
Confidence 43322111 1111111 111100 00000 00011112222211 0
Q ss_pred HhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEee
Q 008221 273 IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST 352 (573)
Q Consensus 273 i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT 352 (573)
......-.+.++||.++.+++.+.+.+.+.. -..+.+++|||+..+.+|+..++.|+.+. .|.++||
T Consensus 499 ai~~h~mdkaiifcrtk~dcDnLer~~~qkg------g~~~scvclhgDrkP~Erk~nle~Fkk~d-------vkflict 565 (725)
T KOG0349|consen 499 AIRRHAMDKAIIFCRTKQDCDNLERMMNQKG------GKHYSCVCLHGDRKPDERKANLESFKKFD-------VKFLICT 565 (725)
T ss_pred hhhhhccCceEEEEeccccchHHHHHHHHcC------CccceeEEEecCCChhHHHHHHHhhhhcC-------eEEEEEe
Confidence 1112234579999999999999999998752 24789999999999999999999999888 9999999
Q ss_pred cccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccc
Q 008221 353 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYT 417 (573)
Q Consensus 353 ~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t 417 (573)
|+|+|||||-++-||||.-+ |-++.+|+||+||.||+ +-|.++.|+.
T Consensus 566 dvaargldi~g~p~~invtl------------------pd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 566 DVAARGLDITGLPFMINVTL------------------PDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred hhhhccccccCCceEEEEec------------------CcccchhhhhhhccchhhhcceeEEEee
Confidence 99999999999999999888 99999999999999999 8999999865
No 75
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.90 E-value=4.7e-23 Score=223.81 Aligned_cols=293 Identities=14% Similarity=0.108 Sum_probs=184.7
Q ss_pred CCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 64 SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 64 ~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
...++++|.+.++.+..+...++.+|||+|||.....+..... .. ...+.++++|+.++..|. .+++.+....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~--~~-~~~~vLilvpt~eL~~Q~---~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYL--EN-YEGKVLIIVPTTSLVTQM---IDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH--hc-CCCeEEEEECcHHHHHHH---HHHHHHhcccc
Confidence 4678899999999988888889999999999986543211000 01 011345666665554443 3333332111
Q ss_pred --cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEE
Q 008221 143 --TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLV 220 (573)
Q Consensus 143 --~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~ii 220 (573)
......+. ........|.+.|++.+.+.. ..++.+++++|+||+|. .....+..+++.+. +..+++
T Consensus 186 ~~~~~~i~~g-----~~~~~~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH~--~~~~~~~~il~~~~---~~~~~l 253 (501)
T PHA02558 186 REAMHKIYSG-----TAKDTDAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECHL--FTGKSLTSIITKLD---NCKFKF 253 (501)
T ss_pred ccceeEEecC-----cccCCCCCEEEeeHHHHhhch--hhhccccCEEEEEchhc--ccchhHHHHHHhhh---ccceEE
Confidence 11111111 111123567888998876543 23578999999999996 33344444444431 245799
Q ss_pred EecccccHH---H--HHchhCCCCeeee-------cCcccCCccc--ccCCC--------chhH-------------HHH
Q 008221 221 VMSATLEAE---K--FQGYFYGAPLMKV-------PGRLHPVEIF--YTQEP--------ERDY-------------LEA 265 (573)
Q Consensus 221 l~SATl~~~---~--~~~~~~~~~~i~v-------~g~~~~v~~~--y~~~~--------~~~~-------------~~~ 265 (573)
.+|||+... . +..+|++. ...+ .|...+++.. +...+ ..++ ...
T Consensus 254 GLTATp~~~~~~~~~~~~~fG~i-~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~ 332 (501)
T PHA02558 254 GLTGSLRDGKANILQYVGLFGDI-FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKW 332 (501)
T ss_pred EEeccCCCccccHHHHHHhhCCc-eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHH
Confidence 999998421 1 22344421 1111 0111111110 00000 0001 001
Q ss_pred HHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCC
Q 008221 266 AIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPG 345 (573)
Q Consensus 266 ~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~ 345 (573)
....+..+. ...+++|||+...+.++.+++.|.+. +..+..+||++++++|..+++.|+.+.
T Consensus 333 I~~~~~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~---------g~~v~~i~G~~~~~eR~~i~~~~~~~~------- 394 (501)
T PHA02558 333 IANLALKLA--KKGENTFVMFKYVEHGKPLYEMLKKV---------YDKVYYVSGEVDTEDRNEMKKIAEGGK------- 394 (501)
T ss_pred HHHHHHHHH--hcCCCEEEEEEEHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHhCCC-------
Confidence 111121221 34567999999999999999999874 678999999999999999999998877
Q ss_pred ceEEEee-cccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCe
Q 008221 346 RKIVVST-NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGK 411 (573)
Q Consensus 346 ~kvllaT-~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~ 411 (573)
..||||| +++++|+|+|++++||.... +.|...|+||+||+||..+|.
T Consensus 395 ~~vLvaT~~~l~eG~Dip~ld~vIl~~p------------------~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 395 GIIIVASYGVFSTGISIKNLHHVIFAHP------------------SKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred CeEEEEEcceeccccccccccEEEEecC------------------CcchhhhhhhhhccccCCCCC
Confidence 7899998 99999999999999997665 778999999999999996553
No 76
>PRK13766 Hef nuclease; Provisional
Probab=99.90 E-value=5.5e-23 Score=235.77 Aligned_cols=111 Identities=26% Similarity=0.335 Sum_probs=99.7
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCC--------CCHHHHhhhcCCCCCCCCCCCCCCceE
Q 008221 277 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYST--------LPPAMQQKIFEPAPPPSKEGGPPGRKI 348 (573)
Q Consensus 277 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~--------l~~~~r~~~~~~~~~g~~~~~~~~~kv 348 (573)
.+.+++|||++++..++.+++.|... ++.+..+||. +++.+|.++++.|+.|. .+|
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~---------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~-------~~v 426 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKE---------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE-------FNV 426 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhC---------CCceEEEEccccccccCCCCHHHHHHHHHHHHcCC-------CCE
Confidence 46678999999999999999999653 6667788876 99999999999999987 899
Q ss_pred EEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhh
Q 008221 349 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF 421 (573)
Q Consensus 349 llaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~ 421 (573)
|+||+++++|+|+|++++||+|+. |.+...|+||+||+||.++|.+|.|+++...
T Consensus 427 LvaT~~~~eGldi~~~~~VI~yd~------------------~~s~~r~iQR~GR~gR~~~~~v~~l~~~~t~ 481 (773)
T PRK13766 427 LVSTSVAEEGLDIPSVDLVIFYEP------------------VPSEIRSIQRKGRTGRQEEGRVVVLIAKGTR 481 (773)
T ss_pred EEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccCcCCCCEEEEEEeCCCh
Confidence 999999999999999999999887 7899999999999999999999999986543
No 77
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=5.9e-23 Score=209.62 Aligned_cols=317 Identities=18% Similarity=0.193 Sum_probs=203.8
Q ss_pred CCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhc
Q 008221 64 SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (573)
Q Consensus 64 ~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (573)
.+.+..+|..+......+ +++++-|||=|||+....++..... ... ...+.+.||.|+..|....+..+...-...
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~--~~~-~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLR--WFG-GKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHH--hcC-CeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 345556677777666665 6778899999999976655443221 111 145778889998777655555443322222
Q ss_pred ccchhceeeeec--ccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEE
Q 008221 144 IGEEVGYSIRFE--DCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLV 220 (573)
Q Consensus 144 ~~~~vg~~~~~~--~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~ii 220 (573)
+....|-. +-+ ...+...++.+.||-....-+++..+ +.++.++|+|||| |.......-.+.+...+...+..++
T Consensus 89 i~~ltGev-~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~il 166 (542)
T COG1111 89 IAALTGEV-RPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLIL 166 (542)
T ss_pred eeeecCCC-ChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEE
Confidence 33333321 111 11234567888999998888877776 9999999999999 5566556666667676665577899
Q ss_pred Eecccc--cHHHHH---chhCCCCeee-ecCc------ccCCcccccCCC------------------------------
Q 008221 221 VMSATL--EAEKFQ---GYFYGAPLMK-VPGR------LHPVEIFYTQEP------------------------------ 258 (573)
Q Consensus 221 l~SATl--~~~~~~---~~~~~~~~i~-v~g~------~~~v~~~y~~~~------------------------------ 258 (573)
.+|||. +.+.+. +.++=..++. -+.. ...+++.+....
T Consensus 167 gLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~ 246 (542)
T COG1111 167 GLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIE 246 (542)
T ss_pred EEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcee
Confidence 999998 334433 3332111100 0000 001111111000
Q ss_pred ------------------------ch-------------------------------hHH--------------------
Q 008221 259 ------------------------ER-------------------------------DYL-------------------- 263 (573)
Q Consensus 259 ------------------------~~-------------------------------~~~-------------------- 263 (573)
.. .|+
T Consensus 247 ~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~ 326 (542)
T COG1111 247 SSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLA 326 (542)
T ss_pred ccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhc
Confidence 00 000
Q ss_pred ------------------------HHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEe-
Q 008221 264 ------------------------EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPL- 318 (573)
Q Consensus 264 ------------------------~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~l- 318 (573)
+.+.+.+......++..+++||..-++.++.+.+.|.+... ... ..+
T Consensus 327 d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~-------~~~-~rFi 398 (542)
T COG1111 327 DPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGI-------KAR-VRFI 398 (542)
T ss_pred ChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCC-------cce-eEEe
Confidence 00001111111123446899999999999999999987521 111 122
Q ss_pred -------cCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeee
Q 008221 319 -------YSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 391 (573)
Q Consensus 319 -------h~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p 391 (573)
..+|+|.+|.++++.|+.|. .+|||||.|+|-|||||+|++||-|+- -
T Consensus 399 GQa~r~~~~GMsQkeQ~eiI~~Fr~Ge-------~nVLVaTSVgEEGLDIp~vDlVifYEp------------------v 453 (542)
T COG1111 399 GQASREGDKGMSQKEQKEIIDQFRKGE-------YNVLVATSVGEEGLDIPEVDLVIFYEP------------------V 453 (542)
T ss_pred eccccccccccCHHHHHHHHHHHhcCC-------ceEEEEcccccccCCCCcccEEEEecC------------------C
Confidence 24799999999999999999 899999999999999999999997654 3
Q ss_pred ccHhhHHHhccccCCCCCCeEEeccchh
Q 008221 392 ISKASAHQRSGRAGRTQPGKCFRLYTEK 419 (573)
Q Consensus 392 ~s~~~~~qR~GRaGR~~~G~~~~l~t~~ 419 (573)
-|.=-++||.|||||.++|.+|-|+++.
T Consensus 454 pSeIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 454 PSEIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred cHHHHHHHhhCccccCCCCeEEEEEecC
Confidence 4666799999999999999999999987
No 78
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.90 E-value=5.9e-23 Score=239.12 Aligned_cols=289 Identities=18% Similarity=0.173 Sum_probs=181.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHH
Q 008221 55 YYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSR 134 (573)
Q Consensus 55 ~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~ 134 (573)
+.+.........++++|...++.+..|++++++||||||||+.+. ++..... . ...+.++++||+++..|......
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l-~~~~~l~-~--~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGL-AMSLFLA-K--KGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH-HHHHHHH-h--cCCeEEEEeCHHHHHHHHHHHHH
Confidence 334444445668999999999999999999999999999998432 2221111 1 12346778888888877777776
Q ss_pred HHHHhhhhcccc---hhceeeeec------ccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccH-----
Q 008221 135 RVAEEMDVTIGE---EVGYSIRFE------DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLAT----- 200 (573)
Q Consensus 135 ~v~~~~~~~~~~---~vg~~~~~~------~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~----- 200 (573)
.+....+..... ..|.....+ ........|.+.|+|++.+.... +..+++++|+||||. .+..
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~~~~~iVvDEaD~-~L~~~k~vd 219 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGPKFDFIFVDDVDA-LLKASKNVD 219 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcCCCCEEEEeChHh-hhhccccHH
Confidence 666554432211 112110000 00112356788999999876543 222899999999994 2220
Q ss_pred ----------HHHHH---HHH------------H---HHHhC-CCc--EEEEecccc-cHHHHHchhCCCCeeeecCc--
Q 008221 201 ----------DVLFG---LLK------------E---VLKNR-PDL--KLVVMSATL-EAEKFQGYFYGAPLMKVPGR-- 246 (573)
Q Consensus 201 ----------d~ll~---~l~------------~---l~~~~-~~~--~iil~SATl-~~~~~~~~~~~~~~i~v~g~-- 246 (573)
+.+.. .++ + +.+.. +.. .++++|||. +...-..+|.+.-.+.+...
T Consensus 220 ~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~ 299 (1171)
T TIGR01054 220 KLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSD 299 (1171)
T ss_pred HHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccc
Confidence 11111 110 0 11111 122 367799995 32211123333222333322
Q ss_pred -ccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcH---HHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCC
Q 008221 247 -LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGE---EEIEDACRKITKEITNMGDQVGPVKVVPLYSTL 322 (573)
Q Consensus 247 -~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~---~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l 322 (573)
..++.+.|..... ....+... .... ...+|||++++ +.++.+++.|.+. ++.+..+||++
T Consensus 300 ~~r~I~~~~~~~~~--~~~~L~~l----l~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~---------g~~a~~lhg~~ 363 (1171)
T TIGR01054 300 TLRNVVDVYVEDED--LKETLLEI----VKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH---------GVKAVAYHATK 363 (1171)
T ss_pred cccceEEEEEeccc--HHHHHHHH----HHHc-CCCEEEEEeccccHHHHHHHHHHHHhC---------CceEEEEeCCC
Confidence 2356677764432 12222222 2212 24689999999 9999999999864 79999999999
Q ss_pred CHHHHhhhcCCCCCCCCCCCCCCceEEEe----ecccccccccCC-eEEEEcCCccccee
Q 008221 323 PPAMQQKIFEPAPPPSKEGGPPGRKIVVS----TNIAETSLTIDG-IVYVIDPGFAKQKV 377 (573)
Q Consensus 323 ~~~~r~~~~~~~~~g~~~~~~~~~kvlla----T~iae~gitI~~-V~~VId~g~~k~~~ 377 (573)
++ ++++.|++|+ .+|||| ||+|+||||||+ |+|||+||+-+.+.
T Consensus 364 ~~----~~l~~Fr~G~-------~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 364 PK----EDYEKFAEGE-------IDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred CH----HHHHHHHcCC-------CCEEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 73 5789999998 899999 599999999999 89999999976643
No 79
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=2.2e-22 Score=222.81 Aligned_cols=314 Identities=20% Similarity=0.198 Sum_probs=197.4
Q ss_pred CCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhc
Q 008221 64 SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (573)
Q Consensus 64 ~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (573)
-+.++++|......+.+|. +....||+|||..+..+++.... . +....++.|+..++.+.......+.+.++.+
T Consensus 76 g~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al-~---G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~ 149 (790)
T PRK09200 76 GMRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL-E---GKGVHLITVNDYLAKRDAEEMGQVYEFLGLT 149 (790)
T ss_pred CCCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH-c---CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 4678888888888888887 77999999999988766653222 1 1234566777777776666677777777777
Q ss_pred ccchhceee-eecccccccccccccCHHHHH-HHH---hc----ccccCCCcEEEEeCCCcCccc--------------H
Q 008221 144 IGEEVGYSI-RFEDCSSARTVLKYLTDGMLL-REA---MT----DPLLERYKVIVLDEAHERTLA--------------T 200 (573)
Q Consensus 144 ~~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~-r~~---~~----~~ll~~~~~lILDEa~~r~~~--------------~ 200 (573)
++..+|... ...........|.+.|+|++. +.+ +. ...+.+..++|+||+|.-.++ .
T Consensus 150 v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~ 229 (790)
T PRK09200 150 VGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQ 229 (790)
T ss_pred EEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCccc
Confidence 766665332 111112234678899999982 222 11 124678899999998731111 0
Q ss_pred HHHHHHHHHHHHhC---------CCcEEEEeccc-cc-HHHH-----------------------HchhC--C-------
Q 008221 201 DVLFGLLKEVLKNR---------PDLKLVVMSAT-LE-AEKF-----------------------QGYFY--G------- 237 (573)
Q Consensus 201 d~ll~~l~~l~~~~---------~~~~iil~SAT-l~-~~~~-----------------------~~~~~--~------- 237 (573)
..+......+.... .+.+.+.++.. .. .+.+ +.++. +
T Consensus 230 ~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~ 309 (790)
T PRK09200 230 SNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYD 309 (790)
T ss_pred cHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEEC
Confidence 11333333333211 11122222221 10 0000 11110 1
Q ss_pred CCeeee---cCc-----cc------------CCcc--------------c---c--------------------------
Q 008221 238 APLMKV---PGR-----LH------------PVEI--------------F---Y-------------------------- 254 (573)
Q Consensus 238 ~~~i~v---~g~-----~~------------~v~~--------------~---y-------------------------- 254 (573)
..++.| .|+ .+ .+++ + |
T Consensus 310 ~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~ 389 (790)
T PRK09200 310 GEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVV 389 (790)
T ss_pred CEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEE
Confidence 111111 111 10 0000 0 0
Q ss_pred -cCC---------------CchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEe
Q 008221 255 -TQE---------------PERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPL 318 (573)
Q Consensus 255 -~~~---------------~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~l 318 (573)
.+. ...++..+++..+...+ ....++|||+++.+.++.++..|.+. ++.+..|
T Consensus 390 ~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~--~~~~pvLIf~~t~~~se~l~~~L~~~---------gi~~~~L 458 (790)
T PRK09200 390 QIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERH--ETGRPVLIGTGSIEQSETFSKLLDEA---------GIPHNLL 458 (790)
T ss_pred ECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEe
Confidence 000 01122333333333332 24668999999999999999999875 7899999
Q ss_pred cCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccccccc---CCeE-----EEEcCCcccceeecccCCcccceee
Q 008221 319 YSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTI---DGIV-----YVIDPGFAKQKVYNPRVRVESLLVS 390 (573)
Q Consensus 319 h~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI---~~V~-----~VId~g~~k~~~~d~~~~~~~l~~~ 390 (573)
||.+.+.++..+...+..| +|+||||+|+||+|| |+|. |||++++
T Consensus 459 ~~~~~~~e~~~i~~ag~~g---------~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~------------------ 511 (790)
T PRK09200 459 NAKNAAKEAQIIAEAGQKG---------AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTER------------------ 511 (790)
T ss_pred cCCccHHHHHHHHHcCCCC---------eEEEEccchhcCcCCCcccccccccCcEEEeccC------------------
Confidence 9999998888777776543 699999999999999 7999 9999999
Q ss_pred eccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 391 PISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 391 p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|.|...|.||+|||||. .+|.|+.+++.++.
T Consensus 512 p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 512 MESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred CCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 99999999999999999 79999999997654
No 80
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.88 E-value=3.1e-21 Score=211.80 Aligned_cols=126 Identities=21% Similarity=0.214 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCC
Q 008221 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGG 342 (573)
Q Consensus 263 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~ 342 (573)
..+.+..+...+ ....++|||+++...++.++..|.+. ++.+..|||.+.+.++..+...+..|
T Consensus 410 ~~ai~~~i~~~~--~~~~pvLIft~s~~~se~ls~~L~~~---------gi~~~~L~a~~~~~E~~ii~~ag~~g----- 473 (762)
T TIGR03714 410 LMATLEDVKEYH--ETGQPVLLITGSVEMSEIYSELLLRE---------GIPHNLLNAQNAAKEAQIIAEAGQKG----- 473 (762)
T ss_pred HHHHHHHHHHHh--hCCCCEEEEECcHHHHHHHHHHHHHC---------CCCEEEecCCChHHHHHHHHHcCCCC-----
Confidence 344444444443 34568999999999999999999875 78899999999999988888776654
Q ss_pred CCCceEEEeecccccccccC---------CeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeE
Q 008221 343 PPGRKIVVSTNIAETSLTID---------GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKC 412 (573)
Q Consensus 343 ~~~~kvllaT~iae~gitI~---------~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~ 412 (573)
+|+||||+|+||+||+ ++.+||++.. |....+ .||+|||||. .||.|
T Consensus 474 ----~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~------------------ps~rid-~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 474 ----AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERM------------------ENSRVD-LQLRGRSGRQGDPGSS 530 (762)
T ss_pred ----eEEEEccccccccCCCCCccccccCCeEEEEecCC------------------CCcHHH-HHhhhcccCCCCceeE
Confidence 6999999999999999 9999999888 777666 9999999999 89999
Q ss_pred EeccchhhhhhhcCCCC
Q 008221 413 FRLYTEKSFNNDLQPQT 429 (573)
Q Consensus 413 ~~l~t~~~~~~~~~~~~ 429 (573)
+.+++.++. .|..+.
T Consensus 531 ~~~is~eD~--l~~~~~ 545 (762)
T TIGR03714 531 QFFVSLEDD--LIKRWS 545 (762)
T ss_pred EEEEccchh--hhhhcc
Confidence 999997664 344443
No 81
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.88 E-value=1.1e-21 Score=221.82 Aligned_cols=328 Identities=21% Similarity=0.252 Sum_probs=212.8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHH
Q 008221 55 YYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSR 134 (573)
Q Consensus 55 ~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~ 134 (573)
+...+..++...+|.+|.+.+..+.+|++++|+.+||||||..|..++++...... ..+.+.+.|+.-+. ....+
T Consensus 59 l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~--~a~AL~lYPtnALa---~DQ~~ 133 (851)
T COG1205 59 LKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP--SARALLLYPTNALA---NDQAE 133 (851)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc--CccEEEEechhhhH---hhHHH
Confidence 46677788999999999999999999999999999999999999999988764221 12456666665543 44444
Q ss_pred HHHHhhhhcccchhceee-----eeccc---ccccccccccCHHHHHHHHhccc-----ccCCCcEEEEeCCCc-CcccH
Q 008221 135 RVAEEMDVTIGEEVGYSI-----RFEDC---SSARTVLKYLTDGMLLREAMTDP-----LLERYKVIVLDEAHE-RTLAT 200 (573)
Q Consensus 135 ~v~~~~~~~~~~~vg~~~-----~~~~~---~~~~~~i~~lT~G~l~r~~~~~~-----ll~~~~~lILDEa~~-r~~~~ 200 (573)
++.+.... .+..++... ..... ......|...++-|+-.+++... ++.+.++||+||+|- |-...
T Consensus 134 rl~~~~~~-~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~G 212 (851)
T COG1205 134 RLRELISD-LPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQG 212 (851)
T ss_pred HHHHHHHh-CCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccch
Confidence 55433221 111122111 00000 12234455667777766555432 478899999999983 12222
Q ss_pred HHHHHHHHHHH---HhCC-CcEEEEecccc-cHHHHH-chhCCCCeee-ecC--cccCCcccccCCC---------chhH
Q 008221 201 DVLFGLLKEVL---KNRP-DLKLVVMSATL-EAEKFQ-GYFYGAPLMK-VPG--RLHPVEIFYTQEP---------ERDY 262 (573)
Q Consensus 201 d~ll~~l~~l~---~~~~-~~~iil~SATl-~~~~~~-~~~~~~~~i~-v~g--~~~~v~~~y~~~~---------~~~~ 262 (573)
-.+--+++++. +..+ ..++|.+|||+ +...++ ++++ ..... +.+ ....-..++...+ ..+.
T Consensus 213 S~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~-~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~ 291 (851)
T COG1205 213 SEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFG-RDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSA 291 (851)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcC-CcceeeccCCCCCCCceEEEEeCCcchhhhhhcccch
Confidence 22333444443 3222 68999999999 444444 4443 22222 332 2222333333322 1122
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCC
Q 008221 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGG 342 (573)
Q Consensus 263 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~ 342 (573)
... ...+..... ...-+.|||+.++..++.++..........+ ......+...||++...+|.++...++.|.
T Consensus 292 ~~~-~~~~~~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g~---- 364 (851)
T COG1205 292 LAE-LATLAALLV-RNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEGE---- 364 (851)
T ss_pred HHH-HHHHHHHHH-HcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcCC----
Confidence 111 112211111 2345789999999999999755544432222 122356889999999999999999999998
Q ss_pred CCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeec-cHhhHHHhccccCCC-CCCeEEeccc
Q 008221 343 PPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI-SKASAHQRSGRAGRT-QPGKCFRLYT 417 (573)
Q Consensus 343 ~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~-s~~~~~qR~GRaGR~-~~G~~~~l~t 417 (573)
.++++|||..|-||||.+++.||.+|+ |. |..++.||+|||||. +.+..+-.+.
T Consensus 365 ---~~~~~st~AlelgidiG~ldavi~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 365 ---LLGVIATNALELGIDIGSLDAVIAYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred ---ccEEecchhhhhceeehhhhhHhhcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 899999999999999999999999999 98 999999999999998 4555554443
No 82
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.87 E-value=2.4e-21 Score=208.77 Aligned_cols=325 Identities=19% Similarity=0.237 Sum_probs=197.4
Q ss_pred hcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 62 RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 62 ~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
-..+++..+|.++..... |++++|+.|||+|||-....++++...-. ...+.+.++|+.|+..|...........
T Consensus 58 p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~--p~~KiVF~aP~~pLv~QQ~a~~~~~~~~-- 132 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR--PKGKVVFLAPTRPLVNQQIACFSIYLIP-- 132 (746)
T ss_pred cCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC--CcceEEEeeCCchHHHHHHHHHhhccCc--
Confidence 357889999999998888 99999999999999987766665443311 1133455667777655544222211111
Q ss_pred hcccchhceeeeecc--cccccccccccCHHHHHHHHhcccc--cCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCC-C
Q 008221 142 VTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-D 216 (573)
Q Consensus 142 ~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~-~ 216 (573)
.......|....... ......++.++|+-.+..-+..... ++...++|+||+|. .....-.-.+++.++.... +
T Consensus 133 ~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hr-a~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 133 YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHR-TSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccc-ccccccHHHHHHHHHHhhhcc
Confidence 111111111110000 1123567888999988877655432 68899999999994 3333333334444443222 3
Q ss_pred cEEEEeccccc--HHHHHchhCC------CCeeee--------cC-cccCCcc---------------------------
Q 008221 217 LKLVVMSATLE--AEKFQGYFYG------APLMKV--------PG-RLHPVEI--------------------------- 252 (573)
Q Consensus 217 ~~iil~SATl~--~~~~~~~~~~------~~~i~v--------~g-~~~~v~~--------------------------- 252 (573)
-|++..|||.. .+...++..+ ...+.. .. ...|++.
T Consensus 212 ~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l 291 (746)
T KOG0354|consen 212 NQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGL 291 (746)
T ss_pred ccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 49999999983 2223222211 000000 00 0000000
Q ss_pred --------cccC------------CC--ch--------------------------------------------------
Q 008221 253 --------FYTQ------------EP--ER-------------------------------------------------- 260 (573)
Q Consensus 253 --------~y~~------------~~--~~-------------------------------------------------- 260 (573)
.|.. .+ .+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~ 371 (746)
T KOG0354|consen 292 IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEAR 371 (746)
T ss_pred cccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcch
Confidence 0000 00 00
Q ss_pred -----------------------hHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEE
Q 008221 261 -----------------------DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVP 317 (573)
Q Consensus 261 -----------------------~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~ 317 (573)
.+++.+.+.+.......+..++|||+.+++.++.+...|.+... .+. .+.+-+..
T Consensus 372 ~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~-~~i-r~~~fiGq 449 (746)
T KOG0354|consen 372 LIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHE-LGI-KAEIFIGQ 449 (746)
T ss_pred hhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhh-ccc-ccceeeec
Confidence 00111112222222234556899999999999999999985221 110 11111111
Q ss_pred ec----CCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeecc
Q 008221 318 LY----STLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPIS 393 (573)
Q Consensus 318 lh----~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s 393 (573)
=+ .+|++.+|+++++.|+.|. .+|||||.|||=||||+.++.||-||. -.+
T Consensus 450 ~~s~~~~gmtqk~Q~evl~~Fr~G~-------~NvLVATSV~EEGLDI~ec~lVIcYd~------------------~sn 504 (746)
T KOG0354|consen 450 GKSTQSTGMTQKEQKEVLDKFRDGE-------INVLVATSVAEEGLDIGECNLVICYDY------------------SSN 504 (746)
T ss_pred cccccccccCHHHHHHHHHHHhCCC-------ccEEEEecchhccCCcccccEEEEecC------------------Ccc
Confidence 11 4799999999999999999 899999999999999999999999888 566
Q ss_pred HhhHHHhccccCCCCCCeEEeccchhh
Q 008221 394 KASAHQRSGRAGRTQPGKCFRLYTEKS 420 (573)
Q Consensus 394 ~~~~~qR~GRaGR~~~G~~~~l~t~~~ 420 (573)
.-..+||.|| ||.+.|.|+.|++..+
T Consensus 505 pIrmIQrrGR-gRa~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 505 PIRMVQRRGR-GRARNSKCVLLTTGSE 530 (746)
T ss_pred HHHHHHHhcc-ccccCCeEEEEEcchh
Confidence 7778999999 9999999999999543
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.86 E-value=1.8e-20 Score=211.23 Aligned_cols=303 Identities=17% Similarity=0.137 Sum_probs=173.3
Q ss_pred CCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhh----
Q 008221 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM---- 140 (573)
Q Consensus 65 lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---- 140 (573)
..+++.|+.+......+..++|.+|||||||.+.......-.. . ...-++++.-|.+..+...++++.+..
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~--~---~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLID--Q---GLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHH--h---CCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 4678999887655455778999999999999975533221000 0 011234455555555555566654311
Q ss_pred h-hcccchhceee---eec--------------------------ccccccccccccCHHHHHHHHhcc------cccCC
Q 008221 141 D-VTIGEEVGYSI---RFE--------------------------DCSSARTVLKYLTDGMLLREAMTD------PLLER 184 (573)
Q Consensus 141 ~-~~~~~~vg~~~---~~~--------------------------~~~~~~~~i~~lT~G~l~r~~~~~------~ll~~ 184 (573)
. ..+....|... .+. .....-..+.+.|.-+++.-.+.. .+--.
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 0 11111111110 000 000012456677887777544332 22223
Q ss_pred CcEEEEeCCCcCcccHHHH-HHHHHHHHHhCCCcEEEEecccccHHH---HHchhCC---------CCeeeecCc----c
Q 008221 185 YKVIVLDEAHERTLATDVL-FGLLKEVLKNRPDLKLVVMSATLEAEK---FQGYFYG---------APLMKVPGR----L 247 (573)
Q Consensus 185 ~~~lILDEa~~r~~~~d~l-l~~l~~l~~~~~~~~iil~SATl~~~~---~~~~~~~---------~~~i~v~g~----~ 247 (573)
-++||+||+|.-+..+..+ ..+++.+.+. +.++|+||||++... +.+-+.. .|.+...+. .
T Consensus 440 ~svvIiDEVHAyD~ym~~lL~~~L~~l~~~--g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~ 517 (878)
T PRK09694 440 RSVLIVDEVHAYDAYMYGLLEAVLKAQAQA--GGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQR 517 (878)
T ss_pred cCeEEEechhhCCHHHHHHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccccee
Confidence 5799999999744444443 3444443332 788999999997533 2222221 122211110 0
Q ss_pred cCC-------------cccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeE
Q 008221 248 HPV-------------EIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVK 314 (573)
Q Consensus 248 ~~v-------------~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~ 314 (573)
+++ ................+..+.... ...+.+|||+||.+.++.+++.|.+.. .....
T Consensus 518 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~------~~~~~ 589 (878)
T PRK09694 518 FDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELN------NTQVD 589 (878)
T ss_pred eeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhC------CCCce
Confidence 000 000000000000122233332222 346789999999999999999998641 12467
Q ss_pred EEEecCCCCHHHH----hhhcCCC-CCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCccccee
Q 008221 315 VVPLYSTLPPAMQ----QKIFEPA-PPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV 389 (573)
Q Consensus 315 v~~lh~~l~~~~r----~~~~~~~-~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~ 389 (573)
+..+||++++.+| +++++.| ++++ ++..+|||||+|+|+||||+ ++++|....
T Consensus 590 v~llHsrf~~~dR~~~E~~vl~~fgk~g~----r~~~~ILVaTQViE~GLDId-~DvlItdla----------------- 647 (878)
T PRK09694 590 IDLFHARFTLNDRREKEQRVIENFGKNGK----RNQGRILVATQVVEQSLDLD-FDWLITQLC----------------- 647 (878)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCC----cCCCeEEEECcchhheeecC-CCeEEECCC-----------------
Confidence 9999999999988 4567777 4443 11248999999999999994 788886433
Q ss_pred eeccHhhHHHhccccCCC
Q 008221 390 SPISKASAHQRSGRAGRT 407 (573)
Q Consensus 390 ~p~s~~~~~qR~GRaGR~ 407 (573)
| .++++||+||+||.
T Consensus 648 -P--idsLiQRaGR~~R~ 662 (878)
T PRK09694 648 -P--VDLLFQRLGRLHRH 662 (878)
T ss_pred -C--HHHHHHHHhccCCC
Confidence 6 57999999999998
No 84
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.85 E-value=3.1e-21 Score=210.53 Aligned_cols=122 Identities=19% Similarity=0.177 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCC
Q 008221 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (573)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (573)
+..+.+..+...+. .+.++|||+++...++.+++.|.+. ++....|||+ +.+|+..+..|..+.
T Consensus 390 k~~ai~~~i~~~~~--~grpvLV~t~si~~se~ls~~L~~~---------gi~~~~Lna~--q~~rEa~ii~~ag~~--- 453 (745)
T TIGR00963 390 KWKAVVDEIKERHA--KGQPVLVGTTSVEKSELLSNLLKER---------GIPHNVLNAK--NHEREAEIIAQAGRK--- 453 (745)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHc---------CCCeEEeeCC--hHHHHHHHHHhcCCC---
Confidence 34444455544443 4568999999999999999999875 7888999998 778888888887776
Q ss_pred CCCCceEEEeecccccccccCC-------eEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEE
Q 008221 342 GPPGRKIVVSTNIAETSLTIDG-------IVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCF 413 (573)
Q Consensus 342 ~~~~~kvllaT~iae~gitI~~-------V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~ 413 (573)
-.|+||||+|+||+||+. ..|||++++ |.|...|.||+|||||. .||.+.
T Consensus 454 ----g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~------------------p~s~ri~~q~~GRtGRqG~~G~s~ 511 (745)
T TIGR00963 454 ----GAVTIATNMAGRGTDIKLEEVKELGGLYVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSR 511 (745)
T ss_pred ----ceEEEEeccccCCcCCCccchhhcCCcEEEecCC------------------CCcHHHHHHHhccccCCCCCcceE
Confidence 799999999999999999 559999999 99999999999999999 899999
Q ss_pred eccchhhh
Q 008221 414 RLYTEKSF 421 (573)
Q Consensus 414 ~l~t~~~~ 421 (573)
.+++.++.
T Consensus 512 ~~ls~eD~ 519 (745)
T TIGR00963 512 FFLSLEDN 519 (745)
T ss_pred EEEeccHH
Confidence 99887764
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.83 E-value=9.1e-20 Score=203.81 Aligned_cols=310 Identities=16% Similarity=0.225 Sum_probs=180.2
Q ss_pred CChHHHHHHHHHHhcC---CEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 66 PVWQQKEEFLQVLKAN---QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 66 p~~~~q~~~i~~i~~g---~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
.+++.|+++++.+.++ +++++.|+||||||..+...+..... . ..+.++++|+..+..+ ..+++.+..+.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~-~---g~~vLvLvPt~~L~~Q---~~~~l~~~fg~ 216 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA-Q---GKQALVLVPEIALTPQ---MLARFRARFGA 216 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-c---CCeEEEEeCcHHHHHH---HHHHHHHHhCC
Confidence 4788999999999874 78999999999999988655433221 1 1234556666555443 45555544443
Q ss_pred cccchhceee---eec---ccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHH-----HHHHHHHHH
Q 008221 143 TIGEEVGYSI---RFE---DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDV-----LFGLLKEVL 211 (573)
Q Consensus 143 ~~~~~vg~~~---~~~---~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~-----ll~~l~~l~ 211 (573)
.+....|... +.. ........|.+.|.+.+. .-+.+..++|+||+|......+. ..++ ....
T Consensus 217 ~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v-a~~r 289 (679)
T PRK05580 217 PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL-AVVR 289 (679)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHHH-HHHH
Confidence 3322222110 000 011123456777876542 23788999999999964432221 1111 1222
Q ss_pred HhCCCcEEEEecccccHHHHHchhC-CCCeeeecCcc----cCCcccccCCCc-------hhHHHHHHHHHHHHhhcCCC
Q 008221 212 KNRPDLKLVVMSATLEAEKFQGYFY-GAPLMKVPGRL----HPVEIFYTQEPE-------RDYLEAAIRTVVQIHMCEPS 279 (573)
Q Consensus 212 ~~~~~~~iil~SATl~~~~~~~~~~-~~~~i~v~g~~----~~v~~~y~~~~~-------~~~~~~~~~~l~~i~~~~~~ 279 (573)
....+.++|++|||...+.+..... ....+....+. .| ++....... ......+++.+.+.. +..
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g 366 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERG 366 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCC-eEEEEechhhhhhcccCCCCHHHHHHHHHHH--HcC
Confidence 2334889999999998776554321 22223332221 11 111111100 000111222222211 234
Q ss_pred CCEEEecCcH------------------------------------------------------------HHHHHHHHHH
Q 008221 280 GDILVFLTGE------------------------------------------------------------EEIEDACRKI 299 (573)
Q Consensus 280 g~iLVFl~~~------------------------------------------------------------~~i~~~~~~L 299 (573)
.++|||+|.+ ..++.+.+.|
T Consensus 367 ~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l 446 (679)
T PRK05580 367 EQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEEL 446 (679)
T ss_pred CeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHH
Confidence 4788888752 1344555555
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCCH--HHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEE--EcCCcccc
Q 008221 300 TKEITNMGDQVGPVKVVPLYSTLPP--AMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYV--IDPGFAKQ 375 (573)
Q Consensus 300 ~~~~~~~~~~~~~~~v~~lh~~l~~--~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~V--Id~g~~k~ 375 (573)
.+. .++..+..+|+++.+ ++++++++.|++|+ ..|||+|+++++|+|+|+|++| +|.|..-
T Consensus 447 ~~~-------fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~-------~~ILVgT~~iakG~d~p~v~lV~il~aD~~l- 511 (679)
T PRK05580 447 AEL-------FPEARILRIDRDTTRRKGALEQLLAQFARGE-------ADILIGTQMLAKGHDFPNVTLVGVLDADLGL- 511 (679)
T ss_pred HHh-------CCCCcEEEEeccccccchhHHHHHHHHhcCC-------CCEEEEChhhccCCCCCCcCEEEEEcCchhc-
Confidence 443 347789999999874 56889999999988 8999999999999999999988 5665410
Q ss_pred eeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEe
Q 008221 376 KVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFR 414 (573)
Q Consensus 376 ~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~ 414 (573)
+-|..+. .-..-..+.|++|||||. .+|.|+-
T Consensus 512 --~~pdfra-----~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 512 --FSPDFRA-----SERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred --cCCccch-----HHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 0000000 011246789999999997 8899883
No 86
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.1e-18 Score=170.01 Aligned_cols=300 Identities=19% Similarity=0.268 Sum_probs=197.0
Q ss_pred hcCCCChHH--HHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHh
Q 008221 62 RKSLPVWQQ--KEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 62 ~~~lp~~~~--q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.|.|.+... -...+..+.+.+.++|.+-||||||-.+-+.+-... .++..+....||.--.+.++.++.+.
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al-------~~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL-------NQGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH-------hcCCeEEEecCcccchHHHHHHHHHh
Confidence 344444432 256778889999999999999999986654332111 12445666778877788888888776
Q ss_pred hh-hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHH-HHHHHhCCCc
Q 008221 140 MD-VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLL-KEVLKNRPDL 217 (573)
Q Consensus 140 ~~-~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l-~~l~~~~~~~ 217 (573)
.. +.+....|.+ ......++.++|.-+++|.-. ..+++|+||+|--+...|..+..- +...+ ++-
T Consensus 168 F~~~~I~~Lyg~S-----~~~fr~plvVaTtHQLlrFk~------aFD~liIDEVDAFP~~~d~~L~~Av~~ark--~~g 234 (441)
T COG4098 168 FSNCDIDLLYGDS-----DSYFRAPLVVATTHQLLRFKQ------AFDLLIIDEVDAFPFSDDQSLQYAVKKARK--KEG 234 (441)
T ss_pred hccCCeeeEecCC-----chhccccEEEEehHHHHHHHh------hccEEEEeccccccccCCHHHHHHHHHhhc--ccC
Confidence 54 4443333322 223346788899999998655 469999999987777777766543 33322 367
Q ss_pred EEEEecccccHHHHHchhC-CCCeeeecCccc----CCcccccCCCchhHHH-----HHHHHHHHHhhcCCCCCEEEecC
Q 008221 218 KLVVMSATLEAEKFQGYFY-GAPLMKVPGRLH----PVEIFYTQEPERDYLE-----AAIRTVVQIHMCEPSGDILVFLT 287 (573)
Q Consensus 218 ~iil~SATl~~~~~~~~~~-~~~~i~v~g~~~----~v~~~y~~~~~~~~~~-----~~~~~l~~i~~~~~~g~iLVFl~ 287 (573)
.+|++|||...+.-.+... +...+.++.+.| ||-.+.-..+...++. ..+...++-+. ....++|||+|
T Consensus 235 ~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~-~~~~P~liF~p 313 (441)
T COG4098 235 ATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQR-KTGRPVLIFFP 313 (441)
T ss_pred ceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHH-hcCCcEEEEec
Confidence 8899999986544333322 223355665533 3322221112222222 12222222222 34568999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEE-
Q 008221 288 GEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVY- 366 (573)
Q Consensus 288 ~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~- 366 (573)
+..-.+.++..|.+. .+...+...||. ...|.+-.+.|++|+ .++|++|.|.|||+|+|+|++
T Consensus 314 ~I~~~eq~a~~lk~~-------~~~~~i~~Vhs~--d~~R~EkV~~fR~G~-------~~lLiTTTILERGVTfp~vdV~ 377 (441)
T COG4098 314 EIETMEQVAAALKKK-------LPKETIASVHSE--DQHRKEKVEAFRDGK-------ITLLITTTILERGVTFPNVDVF 377 (441)
T ss_pred chHHHHHHHHHHHhh-------CCccceeeeecc--CccHHHHHHHHHcCc-------eEEEEEeehhhcccccccceEE
Confidence 999999999999654 345667788876 345777788999999 899999999999999999964
Q ss_pred EEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC--C-CCeEEec
Q 008221 367 VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT--Q-PGKCFRL 415 (573)
Q Consensus 367 VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~--~-~G~~~~l 415 (573)
|++..= + --+.+..+|-+||+||. + .|..+-|
T Consensus 378 Vlgaeh---~--------------vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 378 VLGAEH---R--------------VFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred EecCCc---c--------------cccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 555322 1 23788899999999999 4 3654443
No 87
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=6e-19 Score=193.88 Aligned_cols=299 Identities=15% Similarity=0.170 Sum_probs=173.8
Q ss_pred CCChHHHHHHHHHHhc-C--CEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 65 LPVWQQKEEFLQVLKA-N--QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 65 lp~~~~q~~~i~~i~~-g--~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
..+.++|++.+..+.. | ..-+|+.|||+|||.+....+..- . ...++++|+..+ ..+..+.+.+...
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---~----k~tLILvps~~L---v~QW~~ef~~~~~ 323 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---K----KSCLVLCTSAVS---VEQWKQQFKMWST 323 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---C----CCEEEEeCcHHH---HHHHHHHHHHhcC
Confidence 4567889999988763 3 245778999999998765443221 1 123444433332 2233333333221
Q ss_pred hcccchhceeeeecccc--cccccccccCHHHHHHHHh--------cccc-cCCCcEEEEeCCCcCcccHHHHHHHHHHH
Q 008221 142 VTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAM--------TDPL-LERYKVIVLDEAHERTLATDVLFGLLKEV 210 (573)
Q Consensus 142 ~~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~--------~~~l-l~~~~~lILDEa~~r~~~~d~ll~~l~~l 210 (573)
... ..++.... +... .....+.+.|..++..... ...+ -..+.+||+||+|. +....+..++..+
T Consensus 324 l~~-~~I~~~tg-~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~--lpA~~fr~il~~l 399 (732)
T TIGR00603 324 IDD-SQICRFTS-DAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV--VPAAMFRRVLTIV 399 (732)
T ss_pred CCC-ceEEEEec-CcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc--ccHHHHHHHHHhc
Confidence 111 11111000 0000 1123455666655432110 0112 24688999999996 4444444444433
Q ss_pred HHhCCCcEEEEecccccH--H---HHHchhCCCCeeee-------cCcccCCccc--ccCCCch---hHHH---------
Q 008221 211 LKNRPDLKLVVMSATLEA--E---KFQGYFYGAPLMKV-------PGRLHPVEIF--YTQEPER---DYLE--------- 264 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~--~---~~~~~~~~~~~i~v-------~g~~~~v~~~--y~~~~~~---~~~~--------- 264 (573)
.....+.+|||+.- . .+..++ ++.+... .|..-+++.. +.+.... .|+.
T Consensus 400 ----~a~~RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l 474 (732)
T TIGR00603 400 ----QAHCKLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLL 474 (732)
T ss_pred ----CcCcEEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHH
Confidence 23456889999831 1 122223 3333222 2322232211 1111100 1110
Q ss_pred --------HHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCC
Q 008221 265 --------AAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPP 336 (573)
Q Consensus 265 --------~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~ 336 (573)
.++..++..|. ....++|||+.....++.++..|. +..+||++++.+|.++++.|+.
T Consensus 475 ~~~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~--------------~~~I~G~ts~~ER~~il~~Fr~ 539 (732)
T TIGR00603 475 YVMNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLG--------------KPFIYGPTSQQERMQILQNFQH 539 (732)
T ss_pred hhhChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcC--------------CceEECCCCHHHHHHHHHHHHh
Confidence 11122333332 255689999999888877776652 2348999999999999999986
Q ss_pred C-CCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeee-ccHhhHHHhccccCCCC-CCeE-
Q 008221 337 P-SKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP-ISKASAHQRSGRAGRTQ-PGKC- 412 (573)
Q Consensus 337 g-~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p-~s~~~~~qR~GRaGR~~-~G~~- 412 (573)
+ . .++||+|+++.+|||+|++++||.... | -|...|+||.||++|.+ .|.+
T Consensus 540 ~~~-------i~vLv~SkVgdeGIDlP~a~vvI~~s~------------------~~gS~~q~iQRlGRilR~~~~~~~~ 594 (732)
T TIGR00603 540 NPK-------VNTIFLSKVGDTSIDLPEANVLIQISS------------------HYGSRRQEAQRLGRILRAKKGSDAE 594 (732)
T ss_pred CCC-------ccEEEEecccccccCCCCCCEEEEeCC------------------CCCCHHHHHHHhcccccCCCCCccc
Confidence 5 4 699999999999999999999999765 5 59999999999999994 4555
Q ss_pred ------Eeccchhhhh
Q 008221 413 ------FRLYTEKSFN 422 (573)
Q Consensus 413 ------~~l~t~~~~~ 422 (573)
|.|++++..+
T Consensus 595 ~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 595 EYNAFFYSLVSKDTQE 610 (732)
T ss_pred cccceEEEEecCCchH
Confidence 8888876654
No 88
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.82 E-value=3e-21 Score=206.21 Aligned_cols=441 Identities=8% Similarity=-0.150 Sum_probs=331.2
Q ss_pred hcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 62 RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 62 ~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
++-.|.+.+.+.+++++.++.+.++.+.+||||+++.++.+.+... +......+-++.+++|+..+..+......++.
T Consensus 402 tgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva--~er~e~~g~tvgy~vRf~Sa~prpyg~i~fct 479 (1282)
T KOG0921|consen 402 TGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVA--NERGEEVGETCGYNVRFDSATPRPYGSIMFCT 479 (1282)
T ss_pred ccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHH--HhhHHhhcccccccccccccccccccceeeec
Confidence 5678999999999999999999999999999999999999887653 22223345577889999999998888887777
Q ss_pred hcccchhceeeeecccc-cccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEE
Q 008221 142 VTIGEEVGYSIRFEDCS-SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLV 220 (573)
Q Consensus 142 ~~~~~~vg~~~~~~~~~-~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~ii 220 (573)
+.++...++..+++... ..+..+...+.|.+++.+++. +.+....+.||.|++++++|+|...+..+ .++.
T Consensus 480 vgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~~ 551 (1282)
T KOG0921|consen 480 VGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI------PDVT 551 (1282)
T ss_pred cchhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc------ccee
Confidence 77777777665554332 235556678999999888775 55666778899999999999999888764 3568
Q ss_pred EecccccHHHHHchhCCCCeeeecCcccCCccccc------------------------C------------CCchhHHH
Q 008221 221 VMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYT------------------------Q------------EPERDYLE 264 (573)
Q Consensus 221 l~SATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~------------------------~------------~~~~~~~~ 264 (573)
++++|++...|..++-.++...++++.++++.++. . .......+
T Consensus 552 ~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~E 631 (1282)
T KOG0921|consen 552 VHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIE 631 (1282)
T ss_pred eccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHH
Confidence 99999999998888878888888776655433221 0 01223333
Q ss_pred HHHHHHH------HHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCC
Q 008221 265 AAIRTVV------QIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPS 338 (573)
Q Consensus 265 ~~~~~l~------~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~ 338 (573)
+....+. .+..-.+++..|+||+++.-+......+.+. ..++ .....+.+.|..+...+++.+++....+.
T Consensus 632 al~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y-~ilp--~Hsq~~~~eqrkvf~~~p~gv~kii~stn 708 (1282)
T KOG0921|consen 632 ALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKY-EILP--LHSQLTSQEQRKVFEPVPEGVTKIILSTN 708 (1282)
T ss_pred HHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhc-cccc--chhhcccHhhhhccCcccccccccccccc
Confidence 3322221 1223357889999999999888777776543 1111 23567889999999999999999998887
Q ss_pred CCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccch
Q 008221 339 KEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE 418 (573)
Q Consensus 339 ~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~ 418 (573)
+++...|+.+++.+++..+.+|++++-.+.+.+-....++...+.|.+.-.-.||.||++|.+.+.||.+++.
T Consensus 709 -------iaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~ 781 (1282)
T KOG0921|consen 709 -------IAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALED 781 (1282)
T ss_pred -------eeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHh
Confidence 8999999999999999999999999999999988888888888889999999999999999999999999999
Q ss_pred hhhhhhcCCCChhhhhccCchhHHHHHHHcCCCccccc--cCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhhhcC
Q 008221 419 KSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF--DFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEF 496 (573)
Q Consensus 419 ~~~~~~~~~~~~pei~r~~l~~~~L~~k~~~~~~~~~~--~~~~pP~~~~~~~a~~~L~~lgald~~~~lT~lG~~~~~l 496 (573)
..+ ..|..++.|||.++.....++.++.+-.+.+..+ +.+.+|+......+.-.+.+.-+.+.+-.+|++++.....
T Consensus 782 ~~t-~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k 860 (1282)
T KOG0921|consen 782 HGT-AEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIGK 860 (1282)
T ss_pred cCc-HhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhccCcccccc
Confidence 988 5788999999999888777666665433333333 4456665544444433334443443334479999999999
Q ss_pred CCChhhhhhhhhCCCCCCHHHHHHHHH
Q 008221 497 PLDPQMSKMLVESPKYNCSNEILSISA 523 (573)
Q Consensus 497 p~~p~~~~~l~~~~~~~c~~~~~~i~a 523 (573)
|+.|..|++...++.+-..+-...+++
T Consensus 861 ~~~lg~~~g~~~~m~~~as~~s~~~~~ 887 (1282)
T KOG0921|consen 861 MMILGTALGAGSVMCDVASAMSFPTPF 887 (1282)
T ss_pred eeeechhhccchhhhhhhccccccccc
Confidence 999999998877655433333333333
No 89
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.80 E-value=4.5e-19 Score=199.49 Aligned_cols=314 Identities=15% Similarity=0.157 Sum_probs=204.9
Q ss_pred HHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHh
Q 008221 60 EKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 60 ~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
..-|.---.+-|.++|.++..|+++.|.-|||.|||..+..+.+-... +.++..|+.-........+. .
T Consensus 258 ~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~g----------itvVISPL~SLm~DQv~~L~-~ 326 (941)
T KOG0351|consen 258 EVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGG----------VTVVISPLISLMQDQVTHLS-K 326 (941)
T ss_pred HHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCC----------ceEEeccHHHHHHHHHHhhh-h
Confidence 344666777889999999999999999999999999977544331110 12222333222212222220 0
Q ss_pred hhhcccchhceeee------eccccc--ccccccccCHHHHHHHHhcc---cccCC---CcEEEEeCCCcCcccHHHHH-
Q 008221 140 MDVTIGEEVGYSIR------FEDCSS--ARTVLKYLTDGMLLREAMTD---PLLER---YKVIVLDEAHERTLATDVLF- 204 (573)
Q Consensus 140 ~~~~~~~~vg~~~~------~~~~~~--~~~~i~~lT~G~l~r~~~~~---~ll~~---~~~lILDEa~~r~~~~d~ll- 204 (573)
.++.....-+.+.. +..... ...++.|+||-......... .-+.. ...+|+||||.=+.+.-.|-
T Consensus 327 ~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp 406 (941)
T KOG0351|consen 327 KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRP 406 (941)
T ss_pred cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccH
Confidence 11110000000000 000011 13456677775554322111 11333 68899999996444444443
Q ss_pred --HHHHHHHHhCCCcEEEEecccccHH---HHHchhC--CCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcC
Q 008221 205 --GLLKEVLKNRPDLKLVVMSATLEAE---KFQGYFY--GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCE 277 (573)
Q Consensus 205 --~~l~~l~~~~~~~~iil~SATl~~~---~~~~~~~--~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~ 277 (573)
..+..+..+.++.-+|.+|||.... .+.+.++ +++++. .. ...-..+|...+..+ .......+..+....
T Consensus 407 ~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~-~s-fnR~NL~yeV~~k~~-~~~~~~~~~~~~~~~ 483 (941)
T KOG0351|consen 407 SYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK-SS-FNRPNLKYEVSPKTD-KDALLDILEESKLRH 483 (941)
T ss_pred HHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec-cc-CCCCCceEEEEeccC-ccchHHHHHHhhhcC
Confidence 3334444566788999999998643 3333332 343322 11 112223333222221 122334444555566
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccc
Q 008221 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (573)
Q Consensus 278 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~ 357 (573)
+.+.+||+|.++.+++.+...|+.. ++.+..+|++|+..+|..|...|-.++ .+||+||=...-
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~~---------~~~a~~YHAGl~~~~R~~Vq~~w~~~~-------~~VivATVAFGM 547 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRSL---------GKSAAFYHAGLPPKERETVQKAWMSDK-------IRVIVATVAFGM 547 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHHh---------chhhHhhhcCCCHHHHHHHHHHHhcCC-------CeEEEEEeeccC
Confidence 7889999999999999999999876 688999999999999999999998888 899999999999
Q ss_pred ccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 358 gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|||-|||++||+|++ |.|.+.|.|-+|||||. .+-.|..||+-.++
T Consensus 548 GIdK~DVR~ViH~~l------------------Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~ 594 (941)
T KOG0351|consen 548 GIDKPDVRFVIHYSL------------------PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADI 594 (941)
T ss_pred CCCCCceeEEEECCC------------------chhHHHHHHhccccCcCCCcceeEEecchhHH
Confidence 999999999999999 99999999999999999 78999999998876
No 90
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.79 E-value=1.4e-19 Score=153.33 Aligned_cols=91 Identities=48% Similarity=0.843 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCccCCCCcChhhhhhhcCCCChhhhhhhhhCCCCCCHHHHHHHHHhhcCCCcccCChhhHHHHH--HHHh
Q 008221 469 RALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAAD--EAKA 546 (573)
Q Consensus 469 ~a~~~L~~lgald~~~~lT~lG~~~~~lp~~p~~~~~l~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~--~~~~ 546 (573)
.|++.|+.+||||++|+||++|+.|++||++|++||||+.|..++|.+++++|||+|+++++|..+.+.++..+ ..+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999754332222 2333
Q ss_pred h---------hCCCCChHHHHH
Q 008221 547 R---------FGHIDGDHLTLL 559 (573)
Q Consensus 547 ~---------~~~~~sD~~~~l 559 (573)
+ +.+..|||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 3 467889999986
No 91
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.79 E-value=1.2e-17 Score=182.51 Aligned_cols=444 Identities=18% Similarity=0.244 Sum_probs=266.2
Q ss_pred cCCCChHHHHHHHHHH-hcCCEEEEEcCCCCchhhhhhhhhhcCccC---CChhhcCceEEEEecCcccccccHHHHHHH
Q 008221 63 KSLPVWQQKEEFLQVL-KANQVIILVGETGSGKTTQIPQFVLEGVDI---ETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (573)
Q Consensus 63 ~~lp~~~~q~~~i~~i-~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~---~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (573)
++.....+|.++.|.. ..+++.+|++|||||||-++..-++.-..- ..........++.--|....+....+.+.+
T Consensus 107 ~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~k 186 (1230)
T KOG0952|consen 107 SFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSK 186 (1230)
T ss_pred cHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhh
Confidence 3445566788887765 578999999999999998777544432220 000011233444445555445556666655
Q ss_pred hh---hhcccchhceeeeecccccccccccccCHHHHHHHHhc-----ccccCCCcEEEEeCCCcCcccHHH-HHHHHHH
Q 008221 139 EM---DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT-----DPLLERYKVIVLDEAHERTLATDV-LFGLLKE 209 (573)
Q Consensus 139 ~~---~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~-----~~ll~~~~~lILDEa~~r~~~~d~-ll~~l~~ 209 (573)
.+ +..+++..|.. ........++.|.+.||.- .++.-. ..+.+.++++|+||+|+-....+- +..++.+
T Consensus 187 kl~~~gi~v~ELTGD~-ql~~tei~~tqiiVTTPEK-wDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaR 264 (1230)
T KOG0952|consen 187 KLAPLGISVRELTGDT-QLTKTEIADTQIIVTTPEK-WDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVAR 264 (1230)
T ss_pred hcccccceEEEecCcc-hhhHHHHHhcCEEEecccc-eeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHH
Confidence 43 33444444422 1111223456676666642 232222 246888999999999862222222 2233333
Q ss_pred HH----HhCCCcEEEEecccc-cHHHHHchhCCCC---eeeecCcccC--CcccccCCCch------hHH-HHHHHHHHH
Q 008221 210 VL----KNRPDLKLVVMSATL-EAEKFQGYFYGAP---LMKVPGRLHP--VEIFYTQEPER------DYL-EAAIRTVVQ 272 (573)
Q Consensus 210 l~----~~~~~~~iil~SATl-~~~~~~~~~~~~~---~i~v~g~~~~--v~~~y~~~~~~------~~~-~~~~~~l~~ 272 (573)
.. ......+++.+|||+ +-+.++.|++-.| ++...++..| .++.+...... +.. +.....+.+
T Consensus 265 tlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e 344 (1230)
T KOG0952|consen 265 TLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVE 344 (1230)
T ss_pred HHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHH
Confidence 32 122378999999999 4678888887532 3444444333 34444332222 111 112233333
Q ss_pred HhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCC-------CCC-------eEEEEecCCCCHHHHhhhcCCCCCCC
Q 008221 273 IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ-------VGP-------VKVVPLYSTLPPAMQQKIFEPAPPPS 338 (573)
Q Consensus 273 i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~-------~~~-------~~v~~lh~~l~~~~r~~~~~~~~~g~ 338 (573)
.+. .+.+++||++++.+.-..++.|.+.....+.. ..+ .-....|++|..+.|..+-+.|..|.
T Consensus 345 ~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~ 422 (1230)
T KOG0952|consen 345 FLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGH 422 (1230)
T ss_pred HHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCC
Confidence 332 45689999999999999999998765442211 011 33556799999999999989999888
Q ss_pred CCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC---CCCeEEec
Q 008221 339 KEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRL 415 (573)
Q Consensus 339 ~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~---~~G~~~~l 415 (573)
.+|++||.-.+-|+..|+=..+| --.+.||++.|... -.+..+-+|--|||||. ..|..+-+
T Consensus 423 -------i~vL~cTaTLAwGVNLPA~aViI----KGT~~ydsskg~f~----dlgilDVlQifGRAGRPqFd~~G~giIi 487 (1230)
T KOG0952|consen 423 -------IKVLCCTATLAWGVNLPAYAVII----KGTQVYDSSKGSFV----DLGILDVLQIFGRAGRPQFDSSGEGIII 487 (1230)
T ss_pred -------ceEEEecceeeeccCCcceEEEe----cCCcccccccCcee----eehHHHHHHHHhccCCCCCCCCceEEEE
Confidence 99999999999999999777666 45678998876532 34667889999999999 46777665
Q ss_pred cchhh---hhhhcC--------------CCChhhhh---ccCchhHHHHHHH------cCCCccc---ccc-CCCCCcH-
Q 008221 416 YTEKS---FNNDLQ--------------PQTYPEIL---RSNLANTVLTLKK------LGIDDLV---HFD-FMDPPAP- 464 (573)
Q Consensus 416 ~t~~~---~~~~~~--------------~~~~pei~---r~~l~~~~L~~k~------~~~~~~~---~~~-~~~pP~~- 464 (573)
-+.+. |.+.+. +.-..||- -+++++.+-.++. ++.+... ... ...-|..
T Consensus 488 Tt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~ 567 (1230)
T KOG0952|consen 488 TTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLE 567 (1230)
T ss_pred ecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHH
Confidence 44332 222121 22222332 2334444444442 1111100 012 1222322
Q ss_pred ----HHHHHHHHHHHHcCC--ccCCC---CcChhhhhhhcCCCChhhhhhhhhCCC-CCCHHHHHHHHHhh
Q 008221 465 ----ETLMRALEVLNYLGA--LDDDG---NLTEMGEKMSEFPLDPQMSKMLVESPK-YNCSNEILSISAML 525 (573)
Q Consensus 465 ----~~~~~a~~~L~~lga--ld~~~---~lT~lG~~~~~lp~~p~~~~~l~~~~~-~~c~~~~~~i~a~l 525 (573)
+.+..++..|..... .|.++ ..|++||.++.+++.-..-+.+.+... |--.++++.++++-
T Consensus 568 s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~a 638 (1230)
T KOG0952|consen 568 SHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMA 638 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhh
Confidence 234455556655533 34433 479999999999999999999999887 66777877777653
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=1.9e-18 Score=186.68 Aligned_cols=296 Identities=16% Similarity=0.186 Sum_probs=164.0
Q ss_pred EEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhcee---eeec---cccc
Q 008221 86 LVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYS---IRFE---DCSS 159 (573)
Q Consensus 86 i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~---~~~~---~~~~ 159 (573)
+.|+||||||..+...+..-.. . ..+.+.++|+..+ +.+.++++.+..+..+....+.. .+.. ....
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~-~---g~~vLvlvP~i~L---~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLA-L---GKSVLVLVPEIAL---TPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHH-c---CCeEEEEeCcHHH---HHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc
Confidence 6799999999977544322111 0 1123445554433 33445555544432221111100 0000 0011
Q ss_pred ccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHH----HHHHHHHHhCCCcEEEEecccccHHHHHchh
Q 008221 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLF----GLLKEVLKNRPDLKLVVMSATLEAEKFQGYF 235 (573)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll----~~l~~l~~~~~~~~iil~SATl~~~~~~~~~ 235 (573)
.+..|.+.|.+.+. .-+.+.++||+||.|..+...+... ..+..+.....+.++|++|||...+.+....
T Consensus 75 g~~~IVVGTrsalf------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~ 148 (505)
T TIGR00595 75 GEILVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAK 148 (505)
T ss_pred CCCCEEECChHHHc------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHh
Confidence 23456677766442 1278899999999986443332110 1111222333488999999998877665433
Q ss_pred CC-CCeeeecCc----ccCCcccccCCCch----hHHHHHHHHHHHHhhcCCCCCEEEecCcHHH---------------
Q 008221 236 YG-APLMKVPGR----LHPVEIFYTQEPER----DYLEAAIRTVVQIHMCEPSGDILVFLTGEEE--------------- 291 (573)
Q Consensus 236 ~~-~~~i~v~g~----~~~v~~~y~~~~~~----~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~--------------- 291 (573)
.+ ...+..+.+ ..| .+...+.... .....+++.+.+.. ..++++|||+|++.-
T Consensus 149 ~g~~~~~~l~~r~~~~~~p-~v~vid~~~~~~~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~Cg~~~~C 225 (505)
T TIGR00595 149 QKAYRLLVLTRRVSGRKPP-EVKLIDMRKEPRQSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSCGYILCC 225 (505)
T ss_pred cCCeEEeechhhhcCCCCC-eEEEEecccccccCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhCcCccCC
Confidence 22 112222211 111 1111111100 01112333332222 234589999776432
Q ss_pred ---------------------------------------------HHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHH
Q 008221 292 ---------------------------------------------IEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAM 326 (573)
Q Consensus 292 ---------------------------------------------i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 326 (573)
++.+.+.|.+. .++..+..+|++++...
T Consensus 226 ~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~-------fp~~~v~~~d~d~~~~~ 298 (505)
T TIGR00595 226 PNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKL-------FPGARIARIDSDTTSRK 298 (505)
T ss_pred CCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhh-------CCCCcEEEEecccccCc
Confidence 45556666543 35788999999998766
Q ss_pred H--hhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEE--EcCCcccceeecccCCcccceeeeccHhhHHHhcc
Q 008221 327 Q--QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYV--IDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSG 402 (573)
Q Consensus 327 r--~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~V--Id~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~G 402 (573)
+ +++++.|++|+ ..|||+|+++++|+|+|+|++| +|.|.. .+-|..+. .-.....+.|++|
T Consensus 299 ~~~~~~l~~f~~g~-------~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~---l~~pd~ra-----~E~~~~ll~q~~G 363 (505)
T TIGR00595 299 GAHEALLNQFANGK-------ADILIGTQMIAKGHHFPNVTLVGVLDADSG---LHSPDFRA-----AERGFQLLTQVAG 363 (505)
T ss_pred cHHHHHHHHHhcCC-------CCEEEeCcccccCCCCCcccEEEEEcCccc---ccCcccch-----HHHHHHHHHHHHh
Confidence 5 88899999988 8999999999999999999987 576641 01111000 0113466899999
Q ss_pred ccCCC-CCCeEE-eccchh
Q 008221 403 RAGRT-QPGKCF-RLYTEK 419 (573)
Q Consensus 403 RaGR~-~~G~~~-~l~t~~ 419 (573)
||||. .+|.++ --|.++
T Consensus 364 RagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 364 RAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred ccCCCCCCCEEEEEeCCCC
Confidence 99998 789888 334433
No 93
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.74 E-value=1.4e-17 Score=189.25 Aligned_cols=120 Identities=12% Similarity=0.144 Sum_probs=100.5
Q ss_pred HHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEE
Q 008221 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (573)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (573)
+..+.......++|||+.++..+..+.+.|... .++.+..+||+|++.+|.++++.|..+. ++.+|+
T Consensus 484 L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~-----~~~~VL 550 (956)
T PRK04914 484 LIDFLKSHRSEKVLVICAKAATALQLEQALRER--------EGIRAAVFHEGMSIIERDRAAAYFADEE-----DGAQVL 550 (956)
T ss_pred HHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--------cCeeEEEEECCCCHHHHHHHHHHHhcCC-----CCccEE
Confidence 444444445678999999999999999999542 2789999999999999999999998642 127999
Q ss_pred EeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCC--eEEeccchhh
Q 008221 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPG--KCFRLYTEKS 420 (573)
Q Consensus 350 laT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G--~~~~l~t~~~ 420 (573)
|||+++++|+|++.+++||+|++ |-+.+.|+||+||+||. +.| .+|.++.+..
T Consensus 551 IsTdvgseGlNlq~a~~VInfDl------------------P~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t 606 (956)
T PRK04914 551 LCSEIGSEGRNFQFASHLVLFDL------------------PFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGT 606 (956)
T ss_pred EechhhccCCCcccccEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEEccCCCC
Confidence 99999999999999999999999 99999999999999998 444 4566666543
No 94
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.74 E-value=1.8e-17 Score=165.21 Aligned_cols=308 Identities=15% Similarity=0.142 Sum_probs=187.6
Q ss_pred hHHHHHHHHH-HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHH------hh
Q 008221 68 WQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE------EM 140 (573)
Q Consensus 68 ~~~q~~~i~~-i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~------~~ 140 (573)
++.|++.+.. +..+++|-|+-|||+|||+.+..+-+-.. ++-|++ .|+...+....+.+.. .+
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~---------gITIV~-SPLiALIkDQiDHL~~LKVp~~SL 91 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG---------GITIVI-SPLIALIKDQIDHLKRLKVPCESL 91 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhC---------CeEEEe-hHHHHHHHHHHHHHHhcCCchhHh
Confidence 3456666655 56778999999999999998876654322 122222 3333222222232211 11
Q ss_pred hhcccchhce-eeeec-ccccccccccccCHHHH-----HHHHhcccccCCCcEEEEeCCCcCcccHHHHH-H--HHHHH
Q 008221 141 DVTIGEEVGY-SIRFE-DCSSARTVLKYLTDGML-----LREAMTDPLLERYKVIVLDEAHERTLATDVLF-G--LLKEV 210 (573)
Q Consensus 141 ~~~~~~~vg~-~~~~~-~~~~~~~~i~~lT~G~l-----~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll-~--~l~~l 210 (573)
+..+. ...- .+..+ .....+..+.|.||.+. |.++..-.--.-..++++||||.-+.+...|. + -|-.+
T Consensus 92 NSKlS-t~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~L 170 (641)
T KOG0352|consen 92 NSKLS-TVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSL 170 (641)
T ss_pred cchhh-HHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhH
Confidence 10000 0000 00000 11223455667777543 34443322234568999999986333322221 1 22334
Q ss_pred HHhCCCcEEEEecccccHHHHHchhC----CCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHh----------h-
Q 008221 211 LKNRPDLKLVVMSATLEAEKFQGYFY----GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIH----------M- 275 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~~~~~~~~~----~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~----------~- 275 (573)
....++.--+.++||.+.+.-.+.+. ..|+-......|--..||-.. ..+.+..-+..+.... .
T Consensus 171 RS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~-~K~~I~D~~~~LaDF~~~~LG~~~~~~~ 249 (641)
T KOG0352|consen 171 RSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNH-MKSFITDCLTVLADFSSSNLGKHEKASQ 249 (641)
T ss_pred HhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHH-HHHHhhhHhHhHHHHHHHhcCChhhhhc
Confidence 44567888899999987543333221 223322223333333333211 1111111111111110 0
Q ss_pred --cCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeec
Q 008221 276 --CEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 353 (573)
Q Consensus 276 --~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~ 353 (573)
..-.|--||+|.|+++++.++-.|... ++.+..+|++|...+|.++.+..-++. ..||+||+
T Consensus 250 ~~K~~~GCGIVYCRTR~~cEq~AI~l~~~---------Gi~A~AYHAGLK~~ERTeVQe~WM~~~-------~PvI~AT~ 313 (641)
T KOG0352|consen 250 NKKTFTGCGIVYCRTRNECEQVAIMLEIA---------GIPAMAYHAGLKKKERTEVQEKWMNNE-------IPVIAATV 313 (641)
T ss_pred CCCCcCcceEEEeccHHHHHHHHHHhhhc---------CcchHHHhcccccchhHHHHHHHhcCC-------CCEEEEEe
Confidence 112367899999999999999988765 899999999999999999999988888 89999999
Q ss_pred ccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 354 IAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 354 iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
-...|+|-|+|++||+-+. |.+.+-|-|-+|||||. .+..|--.|++++-
T Consensus 314 SFGMGVDKp~VRFViHW~~------------------~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~ 364 (641)
T KOG0352|consen 314 SFGMGVDKPDVRFVIHWSP------------------SQNLAGYYQESGRAGRDGKRSYCRLYYSRQDK 364 (641)
T ss_pred ccccccCCcceeEEEecCc------------------hhhhHHHHHhccccccCCCccceeeeecccch
Confidence 9999999999999999776 88999999999999999 67778777887765
No 95
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.73 E-value=7.5e-17 Score=178.22 Aligned_cols=463 Identities=17% Similarity=0.172 Sum_probs=260.8
Q ss_pred CCChHHHHHHHHhcCCCChHHHHHHHHHHh-cCCEEEEEcCCCCchhhhhhhhhhcCccCCC-hh---hcCceEEEEecC
Q 008221 50 PYSQRYYEILEKRKSLPVWQQKEEFLQVLK-ANQVIILVGETGSGKTTQIPQFVLEGVDIET-PD---RRRKMMIACTQP 124 (573)
Q Consensus 50 ~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~-~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~-~~---~~~~~~i~~t~p 124 (573)
.+|.|...... +......+|..+-++.. ..+.+.++||||+|||--...-+++...... .. ......++..-|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 44555544433 33447778888887765 4578999999999999744433333222110 00 011112333333
Q ss_pred cccccccHHHHHHH---hhhhcccchhceeeeecccccccccccccCHHHHHHHHhc----ccccCCCcEEEEeCCCcCc
Q 008221 125 RRVAAMSVSRRVAE---EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT----DPLLERYKVIVLDEAHERT 197 (573)
Q Consensus 125 ~~~~~~~v~~~v~~---~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~----~~ll~~~~~lILDEa~~r~ 197 (573)
....+..+...+.+ ..++++++..|... ........+.+.++||... ++.-. ++..+-++.+|+||.|+..
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~-l~~~qieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQ-LGKEQIEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEeccccc-chhhhhhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 32222233332322 23455555555321 1111233567777777533 22222 3456678999999998754
Q ss_pred ccHHHHH-----HHHHHHHHhCCCcEEEEeccccc-HHHHHchhCCCC-eeeecC---cccCCcccccCCCchhHHHH--
Q 008221 198 LATDVLF-----GLLKEVLKNRPDLKLVVMSATLE-AEKFQGYFYGAP-LMKVPG---RLHPVEIFYTQEPERDYLEA-- 265 (573)
Q Consensus 198 ~~~d~ll-----~~l~~l~~~~~~~~iil~SATl~-~~~~~~~~~~~~-~i~v~g---~~~~v~~~y~~~~~~~~~~~-- 265 (573)
-+.+-.+ ...++......+.+++..|||++ -+..+.|+...+ -+..-+ |+-|+++.|.....++....
T Consensus 451 DdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~q 530 (1674)
T KOG0951|consen 451 DDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQ 530 (1674)
T ss_pred cccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHH
Confidence 4444443 22233222334889999999995 345555544222 111112 34467777776654432221
Q ss_pred HH-HHHH-HHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhh-----------------c--------C---CCCCCeEE
Q 008221 266 AI-RTVV-QIHMCEPSGDILVFLTGEEEIEDACRKITKEITN-----------------M--------G---DQVGPVKV 315 (573)
Q Consensus 266 ~~-~~l~-~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~-----------------~--------~---~~~~~~~v 315 (573)
+. +..+ .+......++||||+.++.|..+.++.++..... + . .+.-++.+
T Consensus 531 amNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygf 610 (1674)
T KOG0951|consen 531 AMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGF 610 (1674)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccc
Confidence 11 1111 1223334589999999999999999888732110 0 0 01113457
Q ss_pred EEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHh
Q 008221 316 VPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKA 395 (573)
Q Consensus 316 ~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~ 395 (573)
...|++|+..+|..+-+-|..|. ++|+++|-..|.|++.|.=+++| .-..+|||..+.-. +.|.-
T Consensus 611 aIHhAGl~R~dR~~~EdLf~~g~-------iqvlvstatlawgvnlpahtVii----kgtqvy~pekg~w~----elsp~ 675 (1674)
T KOG0951|consen 611 AIHHAGLNRKDRELVEDLFADGH-------IQVLVSTATLAWGVNLPAHTVII----KGTQVYDPEKGRWT----ELSPL 675 (1674)
T ss_pred eeeccCCCcchHHHHHHHHhcCc-------eeEEEeehhhhhhcCCCcceEEe----cCccccCcccCccc----cCCHH
Confidence 78899999999999999999998 99999999999999999988888 45578999988621 57899
Q ss_pred hHHHhccccCCCC-----CCeEEeccchhhhhhhcCCC--ChhhhhccCchhHHHHHHHcCCCcccc-------------
Q 008221 396 SAHQRSGRAGRTQ-----PGKCFRLYTEKSFNNDLQPQ--TYPEILRSNLANTVLTLKKLGIDDLVH------------- 455 (573)
Q Consensus 396 ~~~qR~GRaGR~~-----~G~~~~l~t~~~~~~~~~~~--~~pei~r~~l~~~~L~~k~~~~~~~~~------------- 455 (573)
+..||.|||||.+ .|+.+.=+++-.|.-.+... ++++-.-+.|..-+=.=+.+|+.....
T Consensus 676 dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvR 755 (1674)
T KOG0951|consen 676 DVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVR 755 (1674)
T ss_pred HHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEe
Confidence 9999999999983 46666555555443222122 222222222211111111222221110
Q ss_pred ---cc--------CCCCCc----HHHHHHHHHHHHHcCCccCC---C--CcChhhhhhhcCCCChhhhhhhhhCCCCCCH
Q 008221 456 ---FD--------FMDPPA----PETLMRALEVLNYLGALDDD---G--NLTEMGEKMSEFPLDPQMSKMLVESPKYNCS 515 (573)
Q Consensus 456 ---~~--------~~~pP~----~~~~~~a~~~L~~lgald~~---~--~lT~lG~~~~~lp~~p~~~~~l~~~~~~~c~ 515 (573)
.+ ..|++. .+.+..|.-.|...|.|--+ | ..|.+|+..+..++.-.-....-....-.|.
T Consensus 756 m~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~ 835 (1674)
T KOG0951|consen 756 MVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMS 835 (1674)
T ss_pred eccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhc
Confidence 01 112221 13456788888888887432 2 4799999999999866554444333333333
Q ss_pred HHHHHHHHhhcCCCcccC
Q 008221 516 NEILSISAMLSVPNCFVR 533 (573)
Q Consensus 516 ~~~~~i~a~l~~~~~f~~ 533 (573)
+. .++...+..+-|..
T Consensus 836 ~i--~lfrifs~seEfk~ 851 (1674)
T KOG0951|consen 836 EI--DLFRIFSKSEEFKY 851 (1674)
T ss_pred cc--hhhhhhhhcccccc
Confidence 32 23334444444543
No 96
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.71 E-value=2.7e-17 Score=152.20 Aligned_cols=149 Identities=21% Similarity=0.359 Sum_probs=118.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCC----hhhcCceEEEEecCcccccccHHHHHH----
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET----PDRRRKMMIACTQPRRVAAMSVSRRVA---- 137 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v~---- 137 (573)
.+..|++++|+||+||||||+++. +.+++..... ...++.+++++++...++.+++.+++.
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 467899999999999999999983 3444432211 123456789999999999999999983
Q ss_pred ----------HhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 138 ----------EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 138 ----------~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
++........||.. ...+.++..+|+|+.||++++|+++.+|+++++|| +.+|+.....+++
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~------~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~ 177 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLA------DKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCch------hhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHH
Confidence 23344555667765 34567788899999999999999999999999999 6789999999999
Q ss_pred HHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
.++++.+. +.+.+++||.|. +...++
T Consensus 178 vm~~LA~e--GmTMivVTHEM~FAr~Vad 204 (240)
T COG1126 178 VMKDLAEE--GMTMIIVTHEMGFAREVAD 204 (240)
T ss_pred HHHHHHHc--CCeEEEEechhHHHHHhhh
Confidence 99999877 899999999986 344554
No 97
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.70 E-value=2.3e-17 Score=137.34 Aligned_cols=90 Identities=56% Similarity=0.879 Sum_probs=81.6
Q ss_pred HHHHHHHHcCCccCCCCcChhhhhhhcCCCChhhhhhhhhCCCC-CCHHHHHHHHHhhcCCCcccCChhhHHHHHHHHhh
Q 008221 469 RALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKY-NCSNEILSISAMLSVPNCFVRPREAQKAADEAKAR 547 (573)
Q Consensus 469 ~a~~~L~~lgald~~~~lT~lG~~~~~lp~~p~~~~~l~~~~~~-~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~ 547 (573)
+|++.|+.+||||.+|+||++|+.|++||++|++||||+.|..+ +|.+++++|+|++++.++|..+ ....+....+..
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 8999999999999999998877 455667777888
Q ss_pred hCCC-CChHHHHH
Q 008221 548 FGHI-DGDHLTLL 559 (573)
Q Consensus 548 ~~~~-~sD~~~~l 559 (573)
|... .|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 8877 79999874
No 98
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.4e-17 Score=155.18 Aligned_cols=148 Identities=18% Similarity=0.282 Sum_probs=114.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhh----
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD---- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---- 141 (573)
.+..|++++|+||+||||||+++.+ .+++... ........++++++..++=.++.+|+.-...
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v--~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc--CCCCCCEEEEeccCcccchhhHHhhheehhhcccc
Confidence 4678999999999999999999843 2333222 1223467899999999998999999843221
Q ss_pred ---------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 142 ---------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 142 ---------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
......||.. ...+..+..+|+||+||+.++++++.+|++++||| ..+|.+....+.+.+.++
T Consensus 103 ~~~e~~~~a~~~L~~VgL~------~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~l 176 (248)
T COG1116 103 SKAEARERAKELLELVGLA------GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRL 176 (248)
T ss_pred chHhHHHHHHHHHHHcCCc------chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHH
Confidence 2233445543 34567888999999999999999999999999999 678888889999999888
Q ss_pred HHhCCCcEEEEecccccHHH-HHc
Q 008221 211 LKNRPDLKLVVMSATLEAEK-FQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~~~-~~~ 233 (573)
.++. +.+++++||+++... +++
T Consensus 177 w~~~-~~TvllVTHdi~EAv~Lsd 199 (248)
T COG1116 177 WEET-RKTVLLVTHDVDEAVYLAD 199 (248)
T ss_pred HHhh-CCEEEEEeCCHHHHHhhhC
Confidence 8775 789999999997554 444
No 99
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.69 E-value=9.3e-17 Score=152.86 Aligned_cols=150 Identities=22% Similarity=0.355 Sum_probs=115.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCC-------hhhcCceEEEEecCcccccccHHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (573)
.|..|+.++|+||+||||||++.. +.+++.++.. ..+.+.+++++++...+..+++.+++.-
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 367899999999999999999983 3344433322 1234568999999999999999999863
Q ss_pred hh-------------hhcccchhceeeeecccccc-cccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 139 EM-------------DVTIGEEVGYSIRFEDCSSA-RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 139 ~~-------------~~~~~~~vg~~~~~~~~~~~-~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
.+ ...+...+|.. ... +..+..+|+|+.||++++|+++.+|++|+.|| ..+|+.....
T Consensus 107 pl~~~~~~~~~~~~~~~~l~~~lgl~------~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~ 180 (226)
T COG1136 107 PLLIAGKSAGRRKRAAEELLEVLGLE------DRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKE 180 (226)
T ss_pred HHHHcCCChhHHHHHHHHHHHhcCCh------hhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHH
Confidence 21 11122223322 122 36688999999999999999999999999999 7788899999
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccHHHHHc
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEAEKFQG 233 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~~~~~~ 233 (573)
++++++++.+.. +..+|++||+.....+++
T Consensus 181 V~~ll~~~~~~~-g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 181 VLELLRELNKER-GKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHhc-CCEEEEEcCCHHHHHhCC
Confidence 999999998775 789999999987666554
No 100
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=2e-16 Score=152.75 Aligned_cols=142 Identities=18% Similarity=0.263 Sum_probs=104.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh-----------cCccCCChhhcCceEEEEecC--cccccccHHHHHHHhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETPDRRRKMMIACTQP--RRVAAMSVSRRVAEEMD--- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll-----------~~~~~~~~~~~~~~~i~~t~p--~~~~~~~v~~~v~~~~~--- 141 (573)
+..|++++|+|||||||||+++.++= .+...........++++|++. ..-.-++|.+-+...+.
T Consensus 27 v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~ 106 (254)
T COG1121 27 VEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK 106 (254)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccc
Confidence 57899999999999999999985541 111111111124578888865 23334677776643221
Q ss_pred --------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 142 --------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 142 --------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
......||.. ...+++|..+|+|++||+++|+++++++++++||| +..|......+++
T Consensus 107 g~~~~~~~~d~~~v~~aL~~Vgm~------~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~ 180 (254)
T COG1121 107 GWFRRLNKKDKEKVDEALERVGME------DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD 180 (254)
T ss_pred cccccccHHHHHHHHHHHHHcCch------hhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHH
Confidence 1122334432 34467899999999999999999999999999999 7778899999999
Q ss_pred HHHHHHHhCCCcEEEEeccccc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~ 227 (573)
+|+++.+. ++.|+++||+++
T Consensus 181 lL~~l~~e--g~tIl~vtHDL~ 200 (254)
T COG1121 181 LLKELRQE--GKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHC--CCEEEEEeCCcH
Confidence 99999877 899999999885
No 101
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.6e-16 Score=154.48 Aligned_cols=152 Identities=21% Similarity=0.326 Sum_probs=123.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCC------hhhcCceEEEEecCcccccccHHHHHHHh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET------PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.|..|++++|+|.+|+||||+++. +++++.++.. ...++.++++++.+..+...+|+++++..
T Consensus 28 ~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~P 107 (339)
T COG1135 28 EIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP 107 (339)
T ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhh
Confidence 578999999999999999999983 4455544322 23456789999999999999999999653
Q ss_pred hh-------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 140 MD-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 140 ~~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
+. ..+.+.||.. ...+.++..+|+|++||+.++|+++.+|++|+.|| +++|+..+..++
T Consensus 108 Leiag~~k~ei~~RV~elLelVgL~------dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL 181 (339)
T COG1135 108 LELAGVPKAEIKQRVAELLELVGLS------DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSIL 181 (339)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCh------hhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHH
Confidence 32 1233455544 34467788899999999999999999999999999 689999999999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH-HHHHchh
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQGYF 235 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~-~~~~~~~ 235 (573)
++|+++.++. ++++++++|.|++ ..+|+..
T Consensus 182 ~LL~~In~~l-glTIvlITHEm~Vvk~ic~rV 212 (339)
T COG1135 182 ELLKDINREL-GLTIVLITHEMEVVKRICDRV 212 (339)
T ss_pred HHHHHHHHHc-CCEEEEEechHHHHHHHhhhh
Confidence 9999999887 9999999999985 5677643
No 102
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.66 E-value=3.3e-15 Score=167.63 Aligned_cols=327 Identities=17% Similarity=0.199 Sum_probs=209.1
Q ss_pred CCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhc
Q 008221 64 SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (573)
Q Consensus 64 ~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (573)
-..+.++|++.+..|..|+-|++++|||||||..---.+.... .. +-.++.|.|.....-+-...+....+.-
T Consensus 117 ~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al--~~-----~qrviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 117 PFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL--RD-----GQRVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred CCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH--Hc-----CCceEeccchhhhhhhHHHHHHHHhhhh
Confidence 3456788999999999999999999999999975331111110 00 1125566666544444444454444322
Q ss_pred ccchhceeeeecccccccccccccCHHHHHHHHhcc-cccCCCcEEEEeCCCc-CcccHHHHHHHHHHHHHhCCCcEEEE
Q 008221 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTD-PLLERYKVIVLDEAHE-RTLATDVLFGLLKEVLKNRPDLKLVV 221 (573)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~-~ll~~~~~lILDEa~~-r~~~~d~ll~~l~~l~~~~~~~~iil 221 (573)
...+|...+... ...+..+.++|.-.+.-++..+ ..+.+...+|+||+|- +.......++.+-.++ ..+.++|+
T Consensus 190 -~~~vGL~TGDv~-IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l--P~~v~~v~ 265 (1041)
T COG4581 190 -ADMVGLMTGDVS-INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL--PDHVRFVF 265 (1041)
T ss_pred -hhhccceeccee-eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhc--CCCCcEEE
Confidence 334554332222 2345677888997777777766 4599999999999984 2233444554443332 22789999
Q ss_pred ecccc-cHHHHHchhC-----CCCeeeecCcccCCcccccCCC--------chhHH----HHHHHHH-------------
Q 008221 222 MSATL-EAEKFQGYFY-----GAPLMKVPGRLHPVEIFYTQEP--------ERDYL----EAAIRTV------------- 270 (573)
Q Consensus 222 ~SATl-~~~~~~~~~~-----~~~~i~v~g~~~~v~~~y~~~~--------~~~~~----~~~~~~l------------- 270 (573)
+|||+ +.+.|+.++. ++-++..+-|.-|.++||.... ..+.. ..+...+
T Consensus 266 LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 345 (1041)
T COG4581 266 LSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDG 345 (1041)
T ss_pred EeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCcc
Confidence 99999 6788998886 3444555556667777665431 00000 0011111
Q ss_pred -------------------------HHHhhcCCCCCEEEecCcHHHHHHHHHHHHHH-------------------Hhhc
Q 008221 271 -------------------------VQIHMCEPSGDILVFLTGEEEIEDACRKITKE-------------------ITNM 306 (573)
Q Consensus 271 -------------------------~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~-------------------~~~~ 306 (573)
........--++++|+=++.+|+..+..+... ...+
T Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L 425 (1041)
T COG4581 346 DVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDL 425 (1041)
T ss_pred ccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhc
Confidence 11111123347999999999999888877521 0011
Q ss_pred CCCCCCe-------------EEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcc
Q 008221 307 GDQVGPV-------------KVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFA 373 (573)
Q Consensus 307 ~~~~~~~-------------~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~ 373 (573)
....-++ -+...|++|=+..+..+-.-|..|- .||++||.+.+-|+++|.-+.|+ .
T Consensus 426 ~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GL-------vkvvFaTeT~s~GiNmPartvv~----~ 494 (1041)
T COG4581 426 AEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGL-------VKVVFATETFAIGINMPARTVVF----T 494 (1041)
T ss_pred ChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccc-------eeEEeehhhhhhhcCCcccceee----e
Confidence 1110011 1336799999999988888888888 99999999999999999666666 4
Q ss_pred cceeecccCCcccceeeeccHhhHHHhccccCCC---CCCeEEeccch
Q 008221 374 KQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTE 418 (573)
Q Consensus 374 k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~---~~G~~~~l~t~ 418 (573)
....+|.... .|.+..+|.|.+|||||- ..|.++...+.
T Consensus 495 ~l~K~dG~~~------r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 495 SLSKFDGNGH------RWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred eeEEecCCce------eecChhHHHHhhhhhccccccccceEEEecCC
Confidence 4455664433 399999999999999998 47999888553
No 103
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.65 E-value=5.5e-15 Score=171.74 Aligned_cols=114 Identities=20% Similarity=0.289 Sum_probs=88.2
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccc
Q 008221 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (573)
Q Consensus 278 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~ 357 (573)
.++++|||+.+...++.+++.|.+.........+...+..+||+.+. +..+++.|+++.. .+|++++|++.+
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~~~li~~Fk~~~~------p~IlVsvdmL~T 768 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--PDQLIRRFKNERL------PNIVVTVDLLTT 768 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--hHHHHHHHhCCCC------CeEEEEeccccc
Confidence 45899999999999999999987653221111223356678998764 5678899987651 379999999999
Q ss_pred ccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCC--Ce-EEeccc
Q 008221 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP--GK-CFRLYT 417 (573)
Q Consensus 358 gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~--G~-~~~l~t 417 (573)
|+|+|.|.+||-... +.|...|.|++||+.|.++ |+ ++.+|+
T Consensus 769 G~DvP~v~~vVf~rp------------------vkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 769 GIDVPSICNLVFLRR------------------VRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred CCCcccccEEEEecC------------------CCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 999999999998666 7899999999999999976 43 455544
No 104
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.65 E-value=1.9e-16 Score=153.75 Aligned_cols=157 Identities=19% Similarity=0.284 Sum_probs=114.9
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
.+.+|++++|+|||||||||+++ .+.+++.++.. ....+.+.++|+.+.....++|.+-+...+.-
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p 103 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYP 103 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCc
Confidence 35789999999999999999998 34455554332 23446788999998777788888877544321
Q ss_pred cccc----------hhceeeee-cccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 143 TIGE----------EVGYSIRF-EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 143 ~~~~----------~vg~~~~~-~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
..+. .+...... .-....++.+..+|+|++||++++++++.++++++||| .|+|......+++++++
T Consensus 104 ~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~ 183 (258)
T COG1120 104 HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183 (258)
T ss_pred ccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHH
Confidence 1000 00000000 00122356678899999999999999999999999999 88999999999999999
Q ss_pred HHHhCCCcEEEEecccccH-HHHHch
Q 008221 210 VLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
+.++. +.++|++.|+++. ..++++
T Consensus 184 l~~~~-~~tvv~vlHDlN~A~ryad~ 208 (258)
T COG1120 184 LNREK-GLTVVMVLHDLNLAARYADH 208 (258)
T ss_pred HHHhc-CCEEEEEecCHHHHHHhCCE
Confidence 98765 8999999999964 456664
No 105
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.65 E-value=6.1e-15 Score=145.08 Aligned_cols=324 Identities=15% Similarity=0.188 Sum_probs=200.8
Q ss_pred CCCCCChHHHHHHHHhc-CCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCc
Q 008221 47 NGKPYSQRYYEILEKRK-SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPR 125 (573)
Q Consensus 47 ~~~~l~~~~~~~l~~~~-~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~ 125 (573)
+++|.|.+..++|++.- .....|.|.+.|++...|++..++-|||-|||..+..+.+-... -.+++.|.-.+
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg-------~alvi~plisl 146 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADG-------FALVICPLISL 146 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCC-------ceEeechhHHH
Confidence 45677788888887642 33455678999999999999999999999999987766543211 12444443222
Q ss_pred ccccccHHHHHH---Hhhhhcc----cchhceeeeecccccccccccccCHHHHHHH--H---hcccc-cCCCcEEEEeC
Q 008221 126 RVAAMSVSRRVA---EEMDVTI----GEEVGYSIRFEDCSSARTVLKYLTDGMLLRE--A---MTDPL-LERYKVIVLDE 192 (573)
Q Consensus 126 ~~~~~~v~~~v~---~~~~~~~----~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~--~---~~~~l-l~~~~~lILDE 192 (573)
....+-+.+.+. ..++... ...|... ..+ ....-++.|+||..+-+. + +..++ ..-.+.+-+||
T Consensus 147 medqil~lkqlgi~as~lnansske~~k~v~~~--i~n-kdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaide 223 (695)
T KOG0353|consen 147 MEDQILQLKQLGIDASMLNANSSKEEAKRVEAA--ITN-KDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDE 223 (695)
T ss_pred HHHHHHHHHHhCcchhhccCcccHHHHHHHHHH--HcC-CCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecc
Confidence 111111111110 0000000 0000000 000 111234667888765432 1 22333 56678999999
Q ss_pred CCcCccc------HHHHHHHHHHHHHhCCCcEEEEecccccHHHH---HchhCCCCeeee-cCcccCCccccc----CCC
Q 008221 193 AHERTLA------TDVLFGLLKEVLKNRPDLKLVVMSATLEAEKF---QGYFYGAPLMKV-PGRLHPVEIFYT----QEP 258 (573)
Q Consensus 193 a~~r~~~------~d~ll~~l~~l~~~~~~~~iil~SATl~~~~~---~~~~~~~~~i~v-~g~~~~v~~~y~----~~~ 258 (573)
+|.-+.+ ....+.+|++ ..++..+|-++||.....+ .+.+.-...+.. .|-.. -..+|. +..
T Consensus 224 vhccsqwghdfr~dy~~l~ilkr---qf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr-~nl~yev~qkp~n 299 (695)
T KOG0353|consen 224 VHCCSQWGHDFRPDYKALGILKR---QFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNR-PNLKYEVRQKPGN 299 (695)
T ss_pred eeehhhhCcccCcchHHHHHHHH---hCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCC-CCceeEeeeCCCC
Confidence 8853333 2235566554 4568899999998632111 111110000000 01000 111121 222
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCC
Q 008221 259 ERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPS 338 (573)
Q Consensus 259 ~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~ 338 (573)
+.+..+....++ ...-....-||+|=++.+++.++..|..+ ++..-.+|..|.+.++..+-+..-.|.
T Consensus 300 ~dd~~edi~k~i---~~~f~gqsgiiyc~sq~d~ekva~alkn~---------gi~a~~yha~lep~dks~~hq~w~a~e 367 (695)
T KOG0353|consen 300 EDDCIEDIAKLI---KGDFAGQSGIIYCFSQKDCEKVAKALKNH---------GIHAGAYHANLEPEDKSGAHQGWIAGE 367 (695)
T ss_pred hHHHHHHHHHHh---ccccCCCcceEEEeccccHHHHHHHHHhc---------CccccccccccCccccccccccccccc
Confidence 334444333332 22222334699999999999999999876 888999999999999999888888887
Q ss_pred CCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHH-------------------
Q 008221 339 KEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQ------------------- 399 (573)
Q Consensus 339 ~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~q------------------- 399 (573)
..|||||-....|||-|||++||+-.+ |.|.++|-|
T Consensus 368 -------iqvivatvafgmgidkpdvrfvihhsl------------------~ksienyyqasarillrmtkqknksdtg 422 (695)
T KOG0353|consen 368 -------IQVIVATVAFGMGIDKPDVRFVIHHSL------------------PKSIENYYQASARILLRMTKQKNKSDTG 422 (695)
T ss_pred -------eEEEEEEeeecccCCCCCeeEEEeccc------------------chhHHHHHHHHHHHHHHHhhhcccccCC
Confidence 899999999999999999999999888 999999999
Q ss_pred ------------------------hccccCCC-CCCeEEeccchhhh
Q 008221 400 ------------------------RSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 400 ------------------------R~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
..|||||. .+..|+..|.-.+.
T Consensus 423 gstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 423 GSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred CcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 78999999 88999988875543
No 106
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=4.1e-16 Score=143.72 Aligned_cols=163 Identities=23% Similarity=0.397 Sum_probs=115.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh----------------hhhhcCccCCC-----hhhcCceEEEEecCcccccccHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIP----------------QFVLEGVDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~----------------~~ll~~~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
.|.++++++++||+||||||+++ .+.+++.++.. ...++.+++++++|..++ +++.++
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydN 107 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDN 107 (253)
T ss_pred eccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHH
Confidence 36789999999999999999988 23444544332 124567899999999988 999999
Q ss_pred HHHhhhh---c---ccchhceeee----ecc-cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 136 VAEEMDV---T---IGEEVGYSIR----FED-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 136 v~~~~~~---~---~~~~vg~~~~----~~~-~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
++..... . +-+.|....+ ++. ....+....-+|+|+.||+.+++++.-+|++|++|| +.+|+..+..
T Consensus 108 VayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~k 187 (253)
T COG1117 108 VAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLK 187 (253)
T ss_pred HHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHH
Confidence 9754211 1 0011111111 111 112234455699999999999999999999999999 7799999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccc-HHHHH---chhCCCCeeee
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQ---GYFYGAPLMKV 243 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~-~~~~~---~~~~~~~~i~v 243 (573)
+.+++.++.+ +.++|++||.|. +...+ .||....++..
T Consensus 188 IEeLi~eLk~---~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 188 IEELITELKK---KYTIVIVTHNMQQAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred HHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE
Confidence 9999999864 579999999995 33444 45554444443
No 107
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.64 E-value=5.7e-16 Score=163.81 Aligned_cols=321 Identities=18% Similarity=0.216 Sum_probs=206.9
Q ss_pred CChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhccc
Q 008221 66 PVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIG 145 (573)
Q Consensus 66 p~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~ 145 (573)
...+.|...|..|..++-|+|.+.|-+|||...--.+-.... ..-.++.|.|-....-+-++.+..+.+ .+|
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr-------~kQRVIYTSPIKALSNQKYREl~~EF~-DVG 200 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR-------EKQRVIYTSPIKALSNQKYRELLEEFK-DVG 200 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH-------hcCeEEeeChhhhhcchhHHHHHHHhc-ccc
Confidence 345789999999999999999999999999754422221111 122356676754333333444444432 222
Q ss_pred chhceeeeecccccccccccccCHHHHHHHHhccc-ccCCCcEEEEeCCC-cCcccHHHHHHHHHHHHHhCCCcEEEEec
Q 008221 146 EEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAH-ERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (573)
Q Consensus 146 ~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lILDEa~-~r~~~~d~ll~~l~~l~~~~~~~~iil~S 223 (573)
...|.- ....+....++|...+.-++-... .+..+..+|+||+| .|.-..+..++---.+ ..++.+.++.|
T Consensus 201 LMTGDV-----TInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIl--lP~~vr~VFLS 273 (1041)
T KOG0948|consen 201 LMTGDV-----TINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIIL--LPDNVRFVFLS 273 (1041)
T ss_pred eeecce-----eeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEe--ccccceEEEEe
Confidence 222211 123345567789988877776554 59999999999999 3444444444322112 22378999999
Q ss_pred ccc-cHHHHHchhC-----CCCeeeecCcccCCcccccCC---------Cc-----hhHHHHHHH---------------
Q 008221 224 ATL-EAEKFQGYFY-----GAPLMKVPGRLHPVEIFYTQE---------PE-----RDYLEAAIR--------------- 268 (573)
Q Consensus 224 ATl-~~~~~~~~~~-----~~~~i~v~g~~~~v~~~y~~~---------~~-----~~~~~~~~~--------------- 268 (573)
||+ ++..|++|.. +|-++--.=|+.|.+||..+. .+ .+.+..+..
T Consensus 274 ATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~ 353 (1041)
T KOG0948|consen 274 ATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKAN 353 (1041)
T ss_pred ccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccc
Confidence 999 5677887763 344555555677777773221 10 111122221
Q ss_pred --------------------HHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhh------------------cCC--
Q 008221 269 --------------------TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITN------------------MGD-- 308 (573)
Q Consensus 269 --------------------~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~------------------~~~-- 308 (573)
.+..+. .....++|||.=++.||+..+..+.+.--+ +..
T Consensus 354 ~k~~kG~~~~~~~~~s~i~kiVkmi~-~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeD 432 (1041)
T KOG0948|consen 354 KKGRKGGTGGKGPGDSDIYKIVKMIM-ERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEED 432 (1041)
T ss_pred cccccCCcCCCCCCcccHHHHHHHHH-hhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhh
Confidence 111121 223458999999999999998877542100 110
Q ss_pred -CCCCe---------EEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceee
Q 008221 309 -QVGPV---------KVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVY 378 (573)
Q Consensus 309 -~~~~~---------~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~ 378 (573)
..+.+ -+...||+|-+--.+.+---|..|- .|||+||-..+-||+.|.-++|. ...+.|
T Consensus 433 r~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGL-------vKvLFATETFsiGLNMPAkTVvF----T~~rKf 501 (1041)
T KOG0948|consen 433 RELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGL-------VKVLFATETFSIGLNMPAKTVVF----TAVRKF 501 (1041)
T ss_pred ccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccH-------HHHHHhhhhhhhccCCcceeEEE----eecccc
Confidence 01111 2556799998766665555577777 89999999999999999877776 556667
Q ss_pred cccCCcccceeeeccHhhHHHhccccCCC---CCCeEEeccchh
Q 008221 379 NPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTEK 419 (573)
Q Consensus 379 d~~~~~~~l~~~p~s~~~~~qR~GRaGR~---~~G~~~~l~t~~ 419 (573)
|.... .|+|.-+|+|.+|||||- ..|+|+.+.++.
T Consensus 502 DG~~f------RwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 502 DGKKF------RWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred CCcce------eeecccceEEecccccccCCCCCceEEEEecCc
Confidence 76654 499999999999999998 479999998864
No 108
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=3.9e-15 Score=165.27 Aligned_cols=121 Identities=24% Similarity=0.216 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCC
Q 008221 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (573)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (573)
+..+++..+...|. ...++|||+++.+..+.++..|.+. ++....||+.+.+.++..+.+.|++|
T Consensus 429 k~~av~~~i~~~~~--~g~PVLVgt~Sie~sE~ls~~L~~~---------gi~h~vLnak~~q~Ea~iia~Ag~~G---- 493 (896)
T PRK13104 429 KFQAIIEDVRECGV--RKQPVLVGTVSIEASEFLSQLLKKE---------NIKHQVLNAKFHEKEAQIIAEAGRPG---- 493 (896)
T ss_pred HHHHHHHHHHHHHh--CCCCEEEEeCcHHHHHHHHHHHHHc---------CCCeEeecCCCChHHHHHHHhCCCCC----
Confidence 44455556655554 4568999999999999999999875 88999999999999999999999887
Q ss_pred CCCCceEEEeecccccccccCCe--------------------------------------EEEEcCCcccceeecccCC
Q 008221 342 GPPGRKIVVSTNIAETSLTIDGI--------------------------------------VYVIDPGFAKQKVYNPRVR 383 (573)
Q Consensus 342 ~~~~~kvllaT~iae~gitI~~V--------------------------------------~~VId~g~~k~~~~d~~~~ 383 (573)
.|+||||+|+||+||.== -|||=+..
T Consensus 494 -----~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTer----------- 557 (896)
T PRK13104 494 -----AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSER----------- 557 (896)
T ss_pred -----cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeecc-----------
Confidence 499999999999998711 13443333
Q ss_pred cccceeeeccHhhHHHhccccCCC-CCCeEEeccchhh
Q 008221 384 VESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (573)
Q Consensus 384 ~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (573)
+-|.--=.|=.|||||. -||.+-.+.+-++
T Consensus 558 -------hesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 558 -------HESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred -------CchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 55665667889999999 7898776666554
No 109
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.62 E-value=1.4e-14 Score=154.66 Aligned_cols=290 Identities=19% Similarity=0.199 Sum_probs=178.2
Q ss_pred cCCCChHHHHHHHHHHhc----CCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHH
Q 008221 63 KSLPVWQQKEEFLQVLKA----NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (573)
Q Consensus 63 ~~lp~~~~q~~~i~~i~~----g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (573)
....+.++|++.++++.. +...+++.|||+|||......+-.-.. ..++++|+.++..|. ++.+..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~-------~~Lvlv~~~~L~~Qw---~~~~~~ 102 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR-------STLVLVPTKELLDQW---AEALKK 102 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC-------CEEEEECcHHHHHHH---HHHHHH
Confidence 455688999999999988 888999999999999988766543322 145566665554443 244433
Q ss_pred hhhhcccchhceeeeeccccccc-ccccccCHHHHHHH-HhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCC
Q 008221 139 EMDVTIGEEVGYSIRFEDCSSAR-TVLKYLTDGMLLRE-AMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPD 216 (573)
Q Consensus 139 ~~~~~~~~~vg~~~~~~~~~~~~-~~i~~lT~G~l~r~-~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~ 216 (573)
..... ..+|..- ....... ..+.+.|--.+.+. .+......++.+||+||+|. ...+....++..+....+
T Consensus 103 ~~~~~--~~~g~~~--~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh--~~a~~~~~~~~~~~~~~~- 175 (442)
T COG1061 103 FLLLN--DEIGIYG--GGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHH--LPAPSYRRILELLSAAYP- 175 (442)
T ss_pred hcCCc--cccceec--CceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEcccc--CCcHHHHHHHHhhhcccc-
Confidence 33321 1122110 0001111 23555555554443 22222344799999999997 444444444444433221
Q ss_pred cEEEEeccccc------HHHHHchhCCCCeeeec-------CcccCCcccccCC-----CchhHH---------------
Q 008221 217 LKLVVMSATLE------AEKFQGYFYGAPLMKVP-------GRLHPVEIFYTQE-----PERDYL--------------- 263 (573)
Q Consensus 217 ~~iil~SATl~------~~~~~~~~~~~~~i~v~-------g~~~~v~~~y~~~-----~~~~~~--------------- 263 (573)
++.+|||.. ...+..+++ ..+..+. |..-|+..+.... ....+.
T Consensus 176 --~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 252 (442)
T COG1061 176 --RLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT 252 (442)
T ss_pred --eeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh
Confidence 899999963 122223332 1122111 2222221111111 000000
Q ss_pred --------------HHHHHHHHHHhhcC-CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHh
Q 008221 264 --------------EAAIRTVVQIHMCE-PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQ 328 (573)
Q Consensus 264 --------------~~~~~~l~~i~~~~-~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 328 (573)
......+..+.... ...+++||+.....+..++..+... +. +..+.|..+..+|.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~---------~~-~~~it~~t~~~eR~ 322 (442)
T COG1061 253 LRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP---------GI-VEAITGETPKEERE 322 (442)
T ss_pred hhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC---------Cc-eEEEECCCCHHHHH
Confidence 00111111111111 3558999999999999999888642 44 78899999999999
Q ss_pred hhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC
Q 008221 329 KIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT 407 (573)
Q Consensus 329 ~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~ 407 (573)
.+++.|+.|. .++|+++.|+.-|+|+|++..+|-..- .-|...|.||.||.=|.
T Consensus 323 ~il~~fr~g~-------~~~lv~~~vl~EGvDiP~~~~~i~~~~------------------t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 323 AILERFRTGG-------IKVLVTVKVLDEGVDIPDADVLIILRP------------------TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHHHHcCC-------CCEEEEeeeccceecCCCCcEEEEeCC------------------CCcHHHHHHHhhhhccC
Confidence 9999999987 899999999999999999999995443 67899999999999995
No 110
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.61 E-value=1.3e-14 Score=164.03 Aligned_cols=195 Identities=21% Similarity=0.208 Sum_probs=120.5
Q ss_pred CCcEEEEeCCCcCccc--HHHHHHHHHHHHHhCCCcEEEEecccccH---HHHHchhCCCCeeeecCcccCCccc-ccCC
Q 008221 184 RYKVIVLDEAHERTLA--TDVLFGLLKEVLKNRPDLKLVVMSATLEA---EKFQGYFYGAPLMKVPGRLHPVEIF-YTQE 257 (573)
Q Consensus 184 ~~~~lILDEa~~r~~~--~d~ll~~l~~l~~~~~~~~iil~SATl~~---~~~~~~~~~~~~i~v~g~~~~v~~~-y~~~ 257 (573)
..+++||||+|.-... ...++.++..+... |..+|+||||++. +.+..++.....+.......+.... ....
T Consensus 338 ~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~--g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~ 415 (733)
T COG1203 338 LTSLVILDEVHLYADETMLAALLALLEALAEA--GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKR 415 (733)
T ss_pred HhhchhhccHHhhcccchHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccccccccc
Confidence 3579999998853333 33344444444333 8999999999975 3455555433222221110000000 0000
Q ss_pred C-chhHHHHH--HHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCC
Q 008221 258 P-ERDYLEAA--IRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPA 334 (573)
Q Consensus 258 ~-~~~~~~~~--~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~ 334 (573)
. ..+..... -............+++||=+||...+.+++..|+.. +..++.|||.+....|.+..+..
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~---------~~~v~LlHSRf~~~dR~~ke~~l 486 (733)
T COG1203 416 KERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK---------GPKVLLLHSRFTLKDREEKEREL 486 (733)
T ss_pred ccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhc---------CCCEEEEecccchhhHHHHHHHH
Confidence 0 00111100 000011122245678999999999999999999874 22799999999999987776632
Q ss_pred ----CCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCC--
Q 008221 335 ----PPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ-- 408 (573)
Q Consensus 335 ----~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~-- 408 (573)
..+. -.|+|||.|.|.|+||+ .+++| +.+....+-+||+||.+|-+
T Consensus 487 ~~~~~~~~-------~~IvVaTQVIEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~ 538 (733)
T COG1203 487 KKLFKQNE-------GFIVVATQVIEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKK 538 (733)
T ss_pred HHHHhccC-------CeEEEEeeEEEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccc
Confidence 1222 58999999999999987 55555 33778889999999999995
Q ss_pred -CCeEEeccc
Q 008221 409 -PGKCFRLYT 417 (573)
Q Consensus 409 -~G~~~~l~t 417 (573)
+|..|..-.
T Consensus 539 ~~~~~~v~~~ 548 (733)
T COG1203 539 ENGKIYVYND 548 (733)
T ss_pred cCCceeEeec
Confidence 566655433
No 111
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.61 E-value=5.5e-15 Score=157.74 Aligned_cols=306 Identities=17% Similarity=0.229 Sum_probs=189.7
Q ss_pred CCCChHHHHHHHHHHhcCC------EEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHH
Q 008221 64 SLPVWQQKEEFLQVLKANQ------VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVA 137 (573)
Q Consensus 64 ~lp~~~~q~~~i~~i~~g~------~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (573)
-..+|.-|++++.-|...- .=+++|.-|||||......++.... . +.+...++||.-++.|...-+..+.
T Consensus 260 PF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~-~---G~Q~ALMAPTEILA~QH~~~~~~~l 335 (677)
T COG1200 260 PFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE-A---GYQAALMAPTEILAEQHYESLRKWL 335 (677)
T ss_pred CCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH-c---CCeeEEeccHHHHHHHHHHHHHHHh
Confidence 4456777888887775431 3467999999999865544443222 1 1234556676666555544444444
Q ss_pred Hhhhhcccchhceeee------ecccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcccHHHHHHHHHHH
Q 008221 138 EEMDVTIGEEVGYSIR------FEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEV 210 (573)
Q Consensus 138 ~~~~~~~~~~vg~~~~------~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~~d~ll~~l~~l 210 (573)
...+..++...|.... ..........+.+.|.-. +.+.. +++..++|+||=|. .....=. .+
T Consensus 336 ~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL-----iQd~V~F~~LgLVIiDEQHR--FGV~QR~----~L 404 (677)
T COG1200 336 EPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL-----IQDKVEFHNLGLVIIDEQHR--FGVHQRL----AL 404 (677)
T ss_pred hhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh-----hhcceeecceeEEEEecccc--ccHHHHH----HH
Confidence 4444444433332110 001112223444455332 23333 78899999999886 2221111 12
Q ss_pred HHhCC-CcEEEEecccccHHHHH-chhCCCCeee---ecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEe
Q 008221 211 LKNRP-DLKLVVMSATLEAEKFQ-GYFYGAPLMK---VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVF 285 (573)
Q Consensus 211 ~~~~~-~~~iil~SATl~~~~~~-~~~~~~~~i~---v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF 285 (573)
..+.. ..-+++||||.=...++ ..|++-.+-. .|....||+.+.......+.+ ++.+..-. ..+.++-|-
T Consensus 405 ~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v---~e~i~~ei--~~GrQaY~V 479 (677)
T COG1200 405 REKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEV---YERIREEI--AKGRQAYVV 479 (677)
T ss_pred HHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHH---HHHHHHHH--HcCCEEEEE
Confidence 22322 35799999998555444 4455433322 233346888888776544432 22222222 234567777
Q ss_pred cCcHHHHH--------HHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccc
Q 008221 286 LTGEEEIE--------DACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (573)
Q Consensus 286 l~~~~~i~--------~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~ 357 (573)
||=.+|-+ .+++.|.. ..+++.+.-+||.|+.++.+.+++.|++|. .+|||||.|.|-
T Consensus 480 cPLIeESE~l~l~~a~~~~~~L~~-------~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e-------~~ILVaTTVIEV 545 (677)
T COG1200 480 CPLIEESEKLELQAAEELYEELKS-------FLPELKVGLVHGRMKPAEKDAVMEAFKEGE-------IDILVATTVIEV 545 (677)
T ss_pred eccccccccchhhhHHHHHHHHHH-------HcccceeEEEecCCChHHHHHHHHHHHcCC-------CcEEEEeeEEEe
Confidence 87766554 44445543 245888999999999999999999999998 899999999999
Q ss_pred ccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhh
Q 008221 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (573)
Q Consensus 358 gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (573)
|||+|+.++.|= +|+.+ ---++-.|=.||.||. .+..|+-+|....
T Consensus 546 GVdVPnATvMVI--------e~AER---------FGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 546 GVDVPNATVMVI--------ENAER---------FGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred cccCCCCeEEEE--------echhh---------hhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999987663 33332 2346667999999999 8899999998654
No 112
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.60 E-value=4.5e-15 Score=164.41 Aligned_cols=114 Identities=20% Similarity=0.150 Sum_probs=100.9
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccc
Q 008221 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (573)
Q Consensus 278 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~ 357 (573)
...++|||++++..++.+++.|.+. ++.+..+||++++.+|.++++.|+.|. ..|+||||++++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G~-------i~VLV~t~~L~r 504 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLGE-------FDVLVGINLLRE 504 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcCC-------ceEEEEcChhcC
Confidence 4568999999999999999999875 788999999999999999999999998 899999999999
Q ss_pred ccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhh
Q 008221 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKS 420 (573)
Q Consensus 358 gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~ 420 (573)
|+|+|++++||.++-.... .|.+..+|+||+|||||..+|.|+.+++..+
T Consensus 505 GfDiP~v~lVvi~DadifG-------------~p~~~~~~iqriGRagR~~~G~vi~~~~~~~ 554 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEG-------------FLRSERSLIQTIGRAARNVNGKVIMYADKIT 554 (655)
T ss_pred CeeeCCCcEEEEeCccccc-------------CCCCHHHHHHHhcCCCCCCCCEEEEEEcCCC
Confidence 9999999999987621100 1889999999999999999999999988644
No 113
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.58 E-value=1.6e-14 Score=161.19 Aligned_cols=112 Identities=21% Similarity=0.154 Sum_probs=100.1
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccc
Q 008221 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (573)
Q Consensus 278 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~ 357 (573)
...++|||++++..++.+++.|... ++.+..+||++++.+|..+++.|+.|. ..|+|||+++++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~---------gi~~~~~h~~~~~~~R~~~l~~f~~g~-------i~vlV~t~~L~r 508 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGE-------FDVLVGINLLRE 508 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc---------ceeEEEEECCCCHHHHHHHHHHHHcCC-------ceEEEEeCHHhC
Confidence 4567999999999999999999874 789999999999999999999999988 899999999999
Q ss_pred ccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccch
Q 008221 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE 418 (573)
Q Consensus 358 gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~ 418 (573)
|+|+|++++||.++.... | .|.+.++|+||+|||||...|.|+.+++.
T Consensus 509 Gfdlp~v~lVii~d~eif-------G------~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 509 GLDIPEVSLVAILDADKE-------G------FLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred CccccCCcEEEEeCCccc-------c------cCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 999999999998775111 0 17789999999999999999999999884
No 114
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=1.3e-14 Score=160.45 Aligned_cols=204 Identities=20% Similarity=0.257 Sum_probs=142.7
Q ss_pred cCCCcEEEEeCCC----cCcccHHHHHHHHHHHH--HhCCC----------------cEEEEecccccH--HHHHchhCC
Q 008221 182 LERYKVIVLDEAH----ERTLATDVLFGLLKEVL--KNRPD----------------LKLVVMSATLEA--EKFQGYFYG 237 (573)
Q Consensus 182 l~~~~~lILDEa~----~r~~~~d~ll~~l~~l~--~~~~~----------------~~iil~SATl~~--~~~~~~~~~ 237 (573)
+.+-+++|+||.- ......+.+...+..-- .-.+. .++-.||.|... +.|.+.+ +
T Consensus 319 V~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY-~ 397 (796)
T PRK12906 319 VQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIY-N 397 (796)
T ss_pred EECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHh-C
Confidence 4566788899932 23344555555554210 00011 145556666632 3343332 4
Q ss_pred CCeeeecCcccCCc------ccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCC
Q 008221 238 APLMKVPGRLHPVE------IFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVG 311 (573)
Q Consensus 238 ~~~i~v~g~~~~v~------~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~ 311 (573)
.+++.||.. .|+. ..|. ....+..+++..+...+. ...++|||+++....+.+++.|.+.
T Consensus 398 l~vv~IPtn-kp~~r~d~~d~i~~--t~~~K~~al~~~i~~~~~--~g~pvLI~t~si~~se~ls~~L~~~--------- 463 (796)
T PRK12906 398 MEVITIPTN-RPVIRKDSPDLLYP--TLDSKFNAVVKEIKERHA--KGQPVLVGTVAIESSERLSHLLDEA--------- 463 (796)
T ss_pred CCEEEcCCC-CCeeeeeCCCeEEc--CHHHHHHHHHHHHHHHHh--CCCCEEEEeCcHHHHHHHHHHHHHC---------
Confidence 566766653 2221 1121 234455566666655553 4668999999999999999999875
Q ss_pred CeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccccccc---CCeE-----EEEcCCcccceeecccCC
Q 008221 312 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTI---DGIV-----YVIDPGFAKQKVYNPRVR 383 (573)
Q Consensus 312 ~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI---~~V~-----~VId~g~~k~~~~d~~~~ 383 (573)
++....||+++.+.++..+...+++| .|+||||+|+||+|| ++|. |||++.+
T Consensus 464 gi~~~~Lna~~~~~Ea~ii~~ag~~g---------~VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~----------- 523 (796)
T PRK12906 464 GIPHAVLNAKNHAKEAEIIMNAGQRG---------AVTIATNMAGRGTDIKLGPGVKELGGLAVIGTER----------- 523 (796)
T ss_pred CCCeeEecCCcHHHHHHHHHhcCCCc---------eEEEEeccccCCCCCCCCcchhhhCCcEEEeeec-----------
Confidence 78889999999988888888877765 499999999999999 5999 9999999
Q ss_pred cccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhhhhhcCCCC
Q 008221 384 VESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNNDLQPQT 429 (573)
Q Consensus 384 ~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~~~~~~~~ 429 (573)
|.|...+.||.|||||. .||.+..+++.++- .|..+.
T Consensus 524 -------pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~--l~~~f~ 561 (796)
T PRK12906 524 -------HESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD--LMRRFG 561 (796)
T ss_pred -------CCcHHHHHHHhhhhccCCCCcceEEEEeccch--HHHhhC
Confidence 99999999999999999 89999998887753 344443
No 115
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.58 E-value=3.9e-15 Score=139.70 Aligned_cols=155 Identities=21% Similarity=0.306 Sum_probs=113.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCC------hhhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET------PDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
|..|+.++|+|++||||||+++. +.+++..+.+ ...++.++++++++..+.-+++.+++...+
T Consensus 27 I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~gr 106 (258)
T COG3638 27 INQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGR 106 (258)
T ss_pred eCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhh
Confidence 67899999999999999999983 3344433222 123457899999999999999999985432
Q ss_pred h---hcccchhceee------------eecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHH
Q 008221 141 D---VTIGEEVGYSI------------RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (573)
Q Consensus 141 ~---~~~~~~vg~~~------------~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~l 203 (573)
- ..+...+|+-. +.+-......+...+|+|+.||+.+++++..++++|+.|| +.+|+.....+
T Consensus 107 l~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~V 186 (258)
T COG3638 107 LGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKV 186 (258)
T ss_pred cccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHH
Confidence 1 01111111110 0011122335566799999999999999999999999999 88999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 204 FGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 204 l~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++.++++.+.. +.++|+..|+++. ..+++
T Consensus 187 m~~l~~in~~~-g~Tvi~nLH~vdlA~~Y~~ 216 (258)
T COG3638 187 MDILKDINQED-GITVIVNLHQVDLAKKYAD 216 (258)
T ss_pred HHHHHHHHHHc-CCEEEEEechHHHHHHHHh
Confidence 99999998875 8999999999874 33443
No 116
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.58 E-value=6.5e-15 Score=141.34 Aligned_cols=181 Identities=20% Similarity=0.170 Sum_probs=117.1
Q ss_pred cCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC-hhhcCceEEEEecC
Q 008221 46 WNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQP 124 (573)
Q Consensus 46 f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~-~~~~~~~~i~~t~p 124 (573)
|+++++++.+.+.+...++..+++.|.++++.+.+|+++++.+|||+|||..+..+++....... ....+.++++|+..
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 78899999999999999999999999999999999999999999999999876655554322110 11123344555544
Q ss_pred cccccccHHHHHHHhhhhcccchhceeee-ecc-cccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcccHH
Q 008221 125 RRVAAMSVSRRVAEEMDVTIGEEVGYSIR-FED-CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATD 201 (573)
Q Consensus 125 ~~~~~~~v~~~v~~~~~~~~~~~vg~~~~-~~~-~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~~d 201 (573)
+..+.....+.+....+..+....|.... ... ....+..+.++|++.+.+.+..... +.+.+++|+||+|. +...
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~--~~~~ 158 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR--MLDM 158 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH--hhcc
Confidence 44443333444433323332222221110 000 0112456788999999887766554 78899999999996 2223
Q ss_pred HHHHHHHHHHHhC-CCcEEEEecccccH
Q 008221 202 VLFGLLKEVLKNR-PDLKLVVMSATLEA 228 (573)
Q Consensus 202 ~ll~~l~~l~~~~-~~~~iil~SATl~~ 228 (573)
.+...+..+.... ++.+++++|||+..
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 159 GFEDQIREILKLLPKDRQTLLFSATMPK 186 (203)
T ss_pred ChHHHHHHHHHhCCcccEEEEEeccCCH
Confidence 3333344333332 37899999999963
No 117
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.58 E-value=6.1e-15 Score=139.37 Aligned_cols=151 Identities=24% Similarity=0.335 Sum_probs=110.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCCh----hhcCceEEEEecCccc--ccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIETP----DRRRKMMIACTQPRRV--AAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~~----~~~~~~~i~~t~p~~~--~~~~v~~~v~~~~ 140 (573)
+..|+.++|+|++||||||+.+. +.+++...... ...+.+.++++.|... +..++-+-+.+.+
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl 109 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPL 109 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhh
Confidence 57899999999999999999873 33444332221 1244567888877532 3344444443332
Q ss_pred h-----------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 141 D-----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 141 ~-----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
. ..+...||... ...+..+..+|+|++||+++++++..+|++||+|| +.+|......++.++
T Consensus 110 ~~~~~~~~~~~i~~~L~~VgL~~-----~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL 184 (252)
T COG1124 110 RPHGLSKSQQRIAELLDQVGLPP-----SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLL 184 (252)
T ss_pred ccCCccHHHHHHHHHHHHcCCCH-----HHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHH
Confidence 2 23344555442 23456788899999999999999999999999999 678889999999999
Q ss_pred HHHHHhCCCcEEEEecccccH-HHHHch
Q 008221 208 KEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
.++.+.+ ++..+++||++.. +.+++.
T Consensus 185 ~~l~~~~-~lt~l~IsHdl~~v~~~cdR 211 (252)
T COG1124 185 LELKKER-GLTYLFISHDLALVEHMCDR 211 (252)
T ss_pred HHHHHhc-CceEEEEeCcHHHHHHHhhh
Confidence 9998887 8999999999864 556654
No 118
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.58 E-value=5.7e-15 Score=138.96 Aligned_cols=153 Identities=21% Similarity=0.299 Sum_probs=118.3
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC------hhhcCceEEEEecCcccccccHHHHHHHh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET------PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.+..|++++|+|++||||||+++.++ +++.++.. ...+++.++++++--.+..++|.+|++..
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp 109 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP 109 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence 36789999999999999999998543 44444322 12345688999998889999999999653
Q ss_pred hhh--------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHH
Q 008221 140 MDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (573)
Q Consensus 140 ~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~l 203 (573)
+.+ .-.+.||..- ...+..+..+|+||..|..++|++..+|+++++|| +++|+.....+
T Consensus 110 lre~~~lp~~~i~~lv~~KL~~VGL~~-----~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~ 184 (263)
T COG1127 110 LREHTKLPESLIRELVLMKLELVGLRG-----AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI 184 (263)
T ss_pred hHhhccCCHHHHHHHHHHHHHhcCCCh-----hhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH
Confidence 211 1123344331 11356778899999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecccccH-HHHHchh
Q 008221 204 FGLLKEVLKNRPDLKLVVMSATLEA-EKFQGYF 235 (573)
Q Consensus 204 l~~l~~l~~~~~~~~iil~SATl~~-~~~~~~~ 235 (573)
.++++++.... +.+++++||+++. ...++++
T Consensus 185 ~~LI~~L~~~l-g~T~i~VTHDl~s~~~i~Drv 216 (263)
T COG1127 185 DELIRELNDAL-GLTVIMVTHDLDSLLTIADRV 216 (263)
T ss_pred HHHHHHHHHhh-CCEEEEEECChHHHHhhhceE
Confidence 99999998875 8999999999964 4566554
No 119
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.58 E-value=2.5e-15 Score=142.05 Aligned_cols=152 Identities=21% Similarity=0.324 Sum_probs=119.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHh---
Q 008221 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEE--- 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~--- 139 (573)
.|..|+.++++||+||||||+++ .+.+++.++.. ...++.++++.++--.++.++++++++.-
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L 102 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKL 102 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhh
Confidence 46789999999999999999988 34455555433 23456788999998899999999998531
Q ss_pred ----------hhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 140 ----------MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 140 ----------~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
+...+...+|... ....++.+..+|+|+.||+-++++++.+|.++++|| ..+|++....+.+.+
T Consensus 103 ~~w~k~~i~~r~~ELl~lvgL~p----~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~ 178 (309)
T COG1125 103 LGWDKERIKKRADELLDLVGLDP----SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI 178 (309)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCH----HHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHH
Confidence 1122334455431 123467888999999999999999999999999999 558999999999999
Q ss_pred HHHHHhCCCcEEEEecccccHH-HHHc
Q 008221 208 KEVLKNRPDLKLVVMSATLEAE-KFQG 233 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~~~-~~~~ 233 (573)
+++.++. +.++|++||+++.. ++++
T Consensus 179 ~~lq~~l-~kTivfVTHDidEA~kLad 204 (309)
T COG1125 179 KELQKEL-GKTIVFVTHDIDEALKLAD 204 (309)
T ss_pred HHHHHHh-CCEEEEEecCHHHHHhhhc
Confidence 9998876 89999999999754 4554
No 120
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.57 E-value=4.6e-15 Score=149.64 Aligned_cols=149 Identities=17% Similarity=0.268 Sum_probs=112.0
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhhc-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT- 143 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~- 143 (573)
.|..|+.+++.|||||||||+++. +.+++.++.. +...+.+.++++..-..+.++|+++++..+...
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~ 104 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG 104 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC
Confidence 367899999999999999999983 4455555443 334567899999999999999999997654321
Q ss_pred -----ccchhceeeee-cccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCC
Q 008221 144 -----IGEEVGYSIRF-EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (573)
Q Consensus 144 -----~~~~vg~~~~~-~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~ 215 (573)
+-..|.-.... .-....++++..+|+|+.||++++++++.+|+++++|| +.+|......+...++++.++.
T Consensus 105 ~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l- 183 (338)
T COG3839 105 VPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL- 183 (338)
T ss_pred CchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhc-
Confidence 01111100000 01123467788999999999999999999999999999 6777777788888888877665
Q ss_pred CcEEEEecccc
Q 008221 216 DLKLVVMSATL 226 (573)
Q Consensus 216 ~~~iil~SATl 226 (573)
+.++|.+||+.
T Consensus 184 ~~T~IYVTHDq 194 (338)
T COG3839 184 GTTTIYVTHDQ 194 (338)
T ss_pred CCcEEEEcCCH
Confidence 78999999986
No 121
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.56 E-value=6.5e-15 Score=132.37 Aligned_cols=149 Identities=18% Similarity=0.361 Sum_probs=113.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhh---
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD--- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~--- 141 (573)
.+..|+.++|.||+||||||+++.+ .+++.+... ....+.+.++++....++.++|+++++-...
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L 100 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL 100 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence 3578999999999999999999843 344444322 1223456677888888899999999853221
Q ss_pred ----------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 142 ----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 142 ----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
......||.. ...++.+..+|+|++||+.+++.++.+-.+++||| +.+|+.....++.++..
T Consensus 101 kL~a~~r~~v~~aa~~vGl~------~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~ 174 (231)
T COG3840 101 KLNAEQREKVEAAAAQVGLA------GFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQ 174 (231)
T ss_pred ccCHHHHHHHHHHHHHhChh------hHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHH
Confidence 2233445543 33456677899999999999999999999999999 77899999999999999
Q ss_pred HHHhCCCcEEEEecccccH-HHHH
Q 008221 210 VLKNRPDLKLVVMSATLEA-EKFQ 232 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~-~~~~ 232 (573)
++.++ +.+++++||..+. ..++
T Consensus 175 l~~E~-~~TllmVTH~~~Da~~ia 197 (231)
T COG3840 175 LCDER-KMTLLMVTHHPEDAARIA 197 (231)
T ss_pred HHHhh-CCEEEEEeCCHHHHHHhh
Confidence 99886 8999999999853 3444
No 122
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.55 E-value=1.2e-14 Score=131.61 Aligned_cols=143 Identities=21% Similarity=0.302 Sum_probs=112.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh-----------cCccCCC------hhhcCceEEEEecCcccccccHHHHHHHh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL-----------EGVDIET------PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll-----------~~~~~~~------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.|..|+.+.++||+||||||+++.++. ++.++.+ +..++.++++++.-+.+...+++++++..
T Consensus 24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred eecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 578899999999999999999985543 3333222 22456789999999999999999999754
Q ss_pred hh-------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 140 MD-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 140 ~~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
+. ..+...||.. ...+..+..+|+|+.||+.+|+++.++|++++.|| ..+|+.....++
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~------~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im 177 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLK------HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM 177 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccc------hhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH
Confidence 32 1233445544 33456677899999999999999999999999999 667888888899
Q ss_pred HHHHHHHHhCCCcEEEEeccccc
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~ 227 (573)
.++.++... +.++++.||+.+
T Consensus 178 ~lfeeinr~--GtTVl~ATHd~~ 198 (223)
T COG2884 178 RLFEEINRL--GTTVLMATHDLE 198 (223)
T ss_pred HHHHHHhhc--CcEEEEEeccHH
Confidence 999998765 899999999754
No 123
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=1e-13 Score=153.94 Aligned_cols=121 Identities=18% Similarity=0.169 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCC
Q 008221 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (573)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (573)
+..+++..+...+. ...++|||+++....+.++..|.+. ++....|||. +.+|+..+..|..+.
T Consensus 415 K~~aI~~~I~~~~~--~grpVLIft~Si~~se~Ls~~L~~~---------gi~~~vLnak--q~eREa~Iia~Ag~~--- 478 (830)
T PRK12904 415 KFDAVVEDIKERHK--KGQPVLVGTVSIEKSELLSKLLKKA---------GIPHNVLNAK--NHEREAEIIAQAGRP--- 478 (830)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCceEeccCc--hHHHHHHHHHhcCCC---
Confidence 34444444444443 4568999999999999999999875 7889999996 778888888888777
Q ss_pred CCCCceEEEeecccccccccCCe--------------------------------------EEEEcCCcccceeecccCC
Q 008221 342 GPPGRKIVVSTNIAETSLTIDGI--------------------------------------VYVIDPGFAKQKVYNPRVR 383 (573)
Q Consensus 342 ~~~~~kvllaT~iae~gitI~~V--------------------------------------~~VId~g~~k~~~~d~~~~ 383 (573)
..|+||||+|+||+||+== -|||=+..
T Consensus 479 ----g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer----------- 543 (830)
T PRK12904 479 ----GAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER----------- 543 (830)
T ss_pred ----ceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc-----------
Confidence 7999999999999999732 14443333
Q ss_pred cccceeeeccHhhHHHhccccCCC-CCCeEEeccchhh
Q 008221 384 VESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (573)
Q Consensus 384 ~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (573)
+.|.--=.|=.|||||. -||.+--+.+-++
T Consensus 544 -------hesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 544 -------HESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred -------CchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 67777778999999999 7998877766554
No 124
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.53 E-value=2.7e-14 Score=129.77 Aligned_cols=146 Identities=20% Similarity=0.333 Sum_probs=111.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhh----
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD---- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---- 141 (573)
.|..|+.+++.||+||||||+++.+. +++..+..+ ....+++++.+..++-+++.++++....
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi 104 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVIDNVAFGLQLRGI 104 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCC--CccceeEeccCccchhhHHHHHHHHHHHhcCC
Confidence 46789999999999999999998432 222222221 2245688999998888999999865332
Q ss_pred ---------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 142 ---------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 142 ---------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.+....||.. ...++.|..+|+|++||+-+++++.-+|++++||| ..+|....+.+.+++-++
T Consensus 105 ~k~~R~~~a~q~l~~VgL~------~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldl 178 (259)
T COG4525 105 EKAQRREIAHQMLALVGLE------GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDL 178 (259)
T ss_pred CHHHHHHHHHHHHHHhCcc------cccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHH
Confidence 1233445544 33467888999999999999999999999999999 456777788888888888
Q ss_pred HHhCCCcEEEEecccccHHHH
Q 008221 211 LKNRPDLKLVVMSATLEAEKF 231 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~~~~ 231 (573)
.+.. +.++++++|+++...|
T Consensus 179 w~~t-gk~~lliTH~ieEAlf 198 (259)
T COG4525 179 WQET-GKQVLLITHDIEEALF 198 (259)
T ss_pred HHHh-CCeEEEEeccHHHHHh
Confidence 7765 8999999999976654
No 125
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.53 E-value=8e-14 Score=151.23 Aligned_cols=332 Identities=13% Similarity=0.196 Sum_probs=203.7
Q ss_pred HHHHHHHHhc---CCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhh-hcCccCCChhhcCceEEEEecCccccc
Q 008221 54 RYYEILEKRK---SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV-LEGVDIETPDRRRKMMIACTQPRRVAA 129 (573)
Q Consensus 54 ~~~~~l~~~~---~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~l-l~~~~~~~~~~~~~~~i~~t~p~~~~~ 129 (573)
.+.+.+.++- -..+...|++.|.++..|+-|.|.++|-||||...--.+ +.... ....+.|.|.....
T Consensus 282 df~~lVpe~a~~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h--------~TR~iYTSPIKALS 353 (1248)
T KOG0947|consen 282 DFYQLVPEMALIYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH--------MTRTIYTSPIKALS 353 (1248)
T ss_pred HHHHhchhHHhhCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh--------ccceEecchhhhhc
Confidence 3444444443 345677899999999999999999999999997543211 11111 22345566643322
Q ss_pred ccHHHHHHHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhccc-ccCCCcEEEEeCCCc-CcccHHHHHHHH
Q 008221 130 MSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHE-RTLATDVLFGLL 207 (573)
Q Consensus 130 ~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lILDEa~~-r~~~~d~ll~~l 207 (573)
-+-++.+.+..+ .+|. +..+.....+..+.+||...+.-++-..+ ++++++.+|+||+|- -....+..++-+
T Consensus 354 NQKfRDFk~tF~-----DvgL-lTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEV 427 (1248)
T KOG0947|consen 354 NQKFRDFKETFG-----DVGL-LTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEV 427 (1248)
T ss_pred cchHHHHHHhcc-----ccce-eecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceee
Confidence 233333333222 2231 11222234456778899999888887766 499999999999982 223344444443
Q ss_pred HHHHHhCCCcEEEEecccc-cHHHHHchhCCC---Ce--eeecCcccCCcccccCCCc----------------------
Q 008221 208 KEVLKNRPDLKLVVMSATL-EAEKFQGYFYGA---PL--MKVPGRLHPVEIFYTQEPE---------------------- 259 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl-~~~~~~~~~~~~---~~--i~v~g~~~~v~~~y~~~~~---------------------- 259 (573)
-..+. +..++|+.|||. +...|++|.+.. .+ +.-..|+-|.+++.-....
T Consensus 428 iIMlP--~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~ 505 (1248)
T KOG0947|consen 428 IIMLP--RHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDS 505 (1248)
T ss_pred eeecc--ccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhh
Confidence 33332 379999999999 577899988732 11 1112233333433211000
Q ss_pred -----------------------------------------hhHH--HHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHH
Q 008221 260 -----------------------------------------RDYL--EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDAC 296 (573)
Q Consensus 260 -----------------------------------------~~~~--~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~ 296 (573)
.+.. .....++.++.. ..--+++||+=++..|++.+
T Consensus 506 ~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k-~~lLP~VvFvFSkkrCde~a 584 (1248)
T KOG0947|consen 506 LKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRK-KNLLPVVVFVFSKKRCDEYA 584 (1248)
T ss_pred hcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhh-cccCceEEEEEccccHHHHH
Confidence 0000 011222223322 23357999999999999999
Q ss_pred HHHHHHHhh------------------c---CCCCCC---------eEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCc
Q 008221 297 RKITKEITN------------------M---GDQVGP---------VKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGR 346 (573)
Q Consensus 297 ~~L~~~~~~------------------~---~~~~~~---------~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~ 346 (573)
+.|...-.. + ..+.+. --+...||++=+-..+-+-.-|..|. .
T Consensus 585 ~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGl-------V 657 (1248)
T KOG0947|consen 585 DYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGL-------V 657 (1248)
T ss_pred HHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCc-------e
Confidence 988542100 0 000111 12667899998877776666677777 9
Q ss_pred eEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC---CCCeEEeccchh
Q 008221 347 KIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTEK 419 (573)
Q Consensus 347 kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~---~~G~~~~l~t~~ 419 (573)
|||+||-..+.|++.|.-++|+++= +.+|.... .-....+|.|.+|||||- ..|.++-+....
T Consensus 658 KVLFATETFAMGVNMPARtvVF~Sl----~KhDG~ef------R~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 658 KVLFATETFAMGVNMPARTVVFSSL----RKHDGNEF------RELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred EEEeehhhhhhhcCCCceeEEeeeh----hhccCcce------eecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 9999999999999999888888742 22333322 256788999999999998 578888776543
No 126
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.53 E-value=2.6e-14 Score=144.47 Aligned_cols=150 Identities=22% Similarity=0.344 Sum_probs=112.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (573)
+..|+++++.|||||||||+++.+. +.+.+... ....+.++++|+.|.....+++.+++......
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~ 107 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG 107 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhC
Confidence 5789999999999999999998432 33322211 12345689999999988999998887432211
Q ss_pred -----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 143 -----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 143 -----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
.+...+|.. ...+..+..+|.|+++|+.++.+++.+|+++|||| +++|+.....+.++++.
T Consensus 108 ~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~ 181 (293)
T COG1131 108 LSKEEAEERIEELLELFGLE------DKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRE 181 (293)
T ss_pred CChhHHHHHHHHHHHHcCCc------hhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHH
Confidence 122233322 11256788899999999999999999999999999 88999999999999999
Q ss_pred HHHhCCCcEEEEeccccc-HHHHHch
Q 008221 210 VLKNRPDLKLVVMSATLE-AEKFQGY 234 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~-~~~~~~~ 234 (573)
+.+.. +..+++.||-++ .+.++++
T Consensus 182 l~~~g-~~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 182 LAKEG-GVTILLSTHILEEAEELCDR 206 (293)
T ss_pred HHhCC-CcEEEEeCCcHHHHHHhCCE
Confidence 98763 479999999985 4555553
No 127
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=4.2e-14 Score=157.23 Aligned_cols=204 Identities=19% Similarity=0.256 Sum_probs=139.7
Q ss_pred cCCCcEEEEeCCC----cCcccHHHHHHHHHHHH--HhCCC----------------cEEEEecccccH--HHHHchhCC
Q 008221 182 LERYKVIVLDEAH----ERTLATDVLFGLLKEVL--KNRPD----------------LKLVVMSATLEA--EKFQGYFYG 237 (573)
Q Consensus 182 l~~~~~lILDEa~----~r~~~~d~ll~~l~~l~--~~~~~----------------~~iil~SATl~~--~~~~~~~~~ 237 (573)
+.+-+++|+||.- ...-..+.+...+..-- +-.+. .++-.||.|... ..|.+.+ +
T Consensus 477 V~dgkV~IVDe~TGRim~gRr~sdGLHQaIEaKE~v~i~~e~~t~AtIT~QnfFr~Y~kLaGMTGTA~te~~Ef~~iY-~ 555 (1025)
T PRK12900 477 VQNGQVMIVDEFTGRILPGRRYSDGLHQAIEAKENVKIEGETQTMATITIQNFFRLYKKLAGMTGTAETEASEFFEIY-K 555 (1025)
T ss_pred EECCEEEEEECCCCccCCCCCcchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHHhchhhcccCCCChhHHHHHHHHh-C
Confidence 4567889999932 22234555555543210 00011 134455666532 2343332 4
Q ss_pred CCeeeecCcccCC------cccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCC
Q 008221 238 APLMKVPGRLHPV------EIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVG 311 (573)
Q Consensus 238 ~~~i~v~g~~~~v------~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~ 311 (573)
-+++.||.. .|+ +..| ....++..+++..+...+. .+.++|||+++....+.+++.|...
T Consensus 556 L~Vv~IPTn-rP~~R~D~~d~vy--~t~~eK~~Ali~~I~~~~~--~grpVLIft~Sve~sE~Ls~~L~~~--------- 621 (1025)
T PRK12900 556 LDVVVIPTN-KPIVRKDMDDLVY--KTRREKYNAIVLKVEELQK--KGQPVLVGTASVEVSETLSRMLRAK--------- 621 (1025)
T ss_pred CcEEECCCC-CCcceecCCCeEe--cCHHHHHHHHHHHHHHHhh--CCCCEEEEeCcHHHHHHHHHHHHHc---------
Confidence 556666642 222 1222 2234566666666655553 4568999999999999999999875
Q ss_pred CeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccC---CeE-----EEEcCCcccceeecccCC
Q 008221 312 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID---GIV-----YVIDPGFAKQKVYNPRVR 383 (573)
Q Consensus 312 ~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~---~V~-----~VId~g~~k~~~~d~~~~ 383 (573)
++....||+ .+.+|+..+..|..+. -.|+||||+|+||+||+ +|. +||++..
T Consensus 622 gI~h~vLna--kq~~REa~Iia~AG~~-------g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgter----------- 681 (1025)
T PRK12900 622 RIAHNVLNA--KQHDREAEIVAEAGQK-------GAVTIATNMAGRGTDIKLGEGVRELGGLFILGSER----------- 681 (1025)
T ss_pred CCCceeecC--CHHHhHHHHHHhcCCC-------CeEEEeccCcCCCCCcCCccchhhhCCceeeCCCC-----------
Confidence 788889997 5778888888888776 79999999999999999 664 4588887
Q ss_pred cccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhhhhhcCCCC
Q 008221 384 VESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNNDLQPQT 429 (573)
Q Consensus 384 ~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~~~~~~~~~ 429 (573)
|-|...|.||.|||||. .||.+..+++.++. .|..+.
T Consensus 682 -------hes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~--Lmr~f~ 719 (1025)
T PRK12900 682 -------HESRRIDRQLRGRAGRQGDPGESVFYVSLEDE--LMRLFG 719 (1025)
T ss_pred -------CchHHHHHHHhhhhhcCCCCcceEEEechhHH--HHHhhC
Confidence 99999999999999999 89999999998765 344443
No 128
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.52 E-value=4.1e-14 Score=125.28 Aligned_cols=104 Identities=23% Similarity=0.390 Sum_probs=95.0
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccc
Q 008221 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (573)
Q Consensus 278 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~ 357 (573)
..+++|||+++...++.+++.|.+. ...+..+||+++..+|..+++.|..+. .+|+++|+.++.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~f~~~~-------~~ili~t~~~~~ 90 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP---------GIKVAALHGDGSQEEREEVLKDFREGE-------IVVLVATDVIAR 90 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHHHcCC-------CcEEEEcChhhc
Confidence 5678999999999999999999763 677999999999999999999999887 899999999999
Q ss_pred ccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEec
Q 008221 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRL 415 (573)
Q Consensus 358 gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l 415 (573)
|+|+|++++||-++. |.+..++.|++||+||. +.|.|+.+
T Consensus 91 G~d~~~~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDL------------------PWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCC------------------CCCHHHheecccccccCCCCceEEeC
Confidence 999999999998888 89999999999999999 58887753
No 129
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.52 E-value=1.8e-14 Score=146.16 Aligned_cols=150 Identities=25% Similarity=0.342 Sum_probs=116.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh--
Q 008221 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (573)
.|.+|+++.+.||+||||||+++ .+.+++.++.. +...+.++++++.--.++.++|++|++..+..
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~ 106 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK 106 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC
Confidence 46789999999999999999998 34556655443 33456788999998899999999999765431
Q ss_pred ------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 143 ------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 143 ------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
.....|+.. ...+.++..+|+|+.||+++++++..+|++++||| ..+|.-....+...++
T Consensus 107 ~~~~~~i~~rv~e~L~lV~L~------~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk 180 (352)
T COG3842 107 KLKKAEIKARVEEALELVGLE------GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELK 180 (352)
T ss_pred CCCHHHHHHHHHHHHHHcCch------hhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHH
Confidence 111122221 23467888999999999999999999999999999 6677777888888888
Q ss_pred HHHHhCCCcEEEEecccccHH-HHHc
Q 008221 209 EVLKNRPDLKLVVMSATLEAE-KFQG 233 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~~-~~~~ 233 (573)
++.+.. +.+.|++||+-... .+++
T Consensus 181 ~lq~~~-giT~i~VTHDqeEAl~msD 205 (352)
T COG3842 181 ELQREL-GITFVYVTHDQEEALAMSD 205 (352)
T ss_pred HHHHhc-CCeEEEEECCHHHHhhhcc
Confidence 888776 99999999987543 3444
No 130
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=2.1e-14 Score=139.55 Aligned_cols=156 Identities=23% Similarity=0.284 Sum_probs=112.9
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhh-----------hhhcCc---cCCC-hhhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGV---DIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~---~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
.|.+|+.+++.||+||||||+++. +.+++. +..+ ....++++++++..-.+..++|+++++....
T Consensus 24 ~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~ 103 (345)
T COG1118 24 DIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLK 103 (345)
T ss_pred eecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccc
Confidence 466999999999999999999983 344444 2222 2234578899999888999999999987553
Q ss_pred hc--------ccchhceeeeeccc-ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 142 VT--------IGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 142 ~~--------~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.. ....+.-..+..+. ...+.++..+|+|+.||+++++++...|++|+||| ..+|......+...|+++
T Consensus 104 ~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~ 183 (345)
T COG1118 104 VRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183 (345)
T ss_pred ccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHH
Confidence 22 11111100111111 22357788999999999999999999999999999 456667777788888888
Q ss_pred HHhCCCcEEEEeccccc-HHHHHc
Q 008221 211 LKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
..+. +..++++||+.+ +..+++
T Consensus 184 ~~~~-~~ttvfVTHD~eea~~lad 206 (345)
T COG1118 184 HDRL-GVTTVFVTHDQEEALELAD 206 (345)
T ss_pred HHhh-CceEEEEeCCHHHHHhhcc
Confidence 7765 899999999984 344554
No 131
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.51 E-value=4.7e-14 Score=145.25 Aligned_cols=149 Identities=22% Similarity=0.349 Sum_probs=111.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCCh------hhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
+..|++++|+|+|||||||+++.+ .+++.++... ..++.+.++++.+......++.++++...
T Consensus 28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~ 107 (343)
T TIGR02314 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPL 107 (343)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHH
Confidence 578999999999999999999843 3344333211 12346788898887777789998886432
Q ss_pred hh-------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 141 DV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 141 ~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
.. .....+|.. ...+..+..+|+|++||+.++++++.+|+++++|| +++|......+++
T Consensus 108 ~~~~~~~~~~~~~v~e~l~~vgL~------~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~ 181 (343)
T TIGR02314 108 ELDNTPKDEIKRKVTELLALVGLG------DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILE 181 (343)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCc------hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 11 112223322 22356778899999999999999999999999999 7899999999999
Q ss_pred HHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++++.+.. +.++|++||.++. ..+++
T Consensus 182 lL~~l~~~~-g~tiiliTH~~~~v~~~~d 209 (343)
T TIGR02314 182 LLKEINRRL-GLTILLITHEMDVVKRICD 209 (343)
T ss_pred HHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 999987654 7899999999864 34554
No 132
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=5e-14 Score=146.21 Aligned_cols=149 Identities=15% Similarity=0.184 Sum_probs=111.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|+.++|.|||||||||+++.+ .+++..+.. ....+.+.++++.+.....+++.+++......
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~ 106 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGM 106 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCC
Confidence 568999999999999999999843 334433221 11235688899988888889999998643211
Q ss_pred ----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.....+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+...++++
T Consensus 107 ~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l 180 (356)
T PRK11650 107 PKAEIEERVAEAARILELE------PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRL 180 (356)
T ss_pred CHHHHHHHHHHHHHHcCCh------hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 011112221 23456778899999999999999999999999999 788888899999999998
Q ss_pred HHhCCCcEEEEeccccc-HHHHHc
Q 008221 211 LKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
.+.. +.++|++||..+ +..+++
T Consensus 181 ~~~~-g~tii~vTHd~~ea~~l~D 203 (356)
T PRK11650 181 HRRL-KTTSLYVTHDQVEAMTLAD 203 (356)
T ss_pred HHhc-CCEEEEEeCCHHHHHHhCC
Confidence 7654 789999999885 344554
No 133
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.51 E-value=5e-14 Score=145.88 Aligned_cols=150 Identities=18% Similarity=0.306 Sum_probs=112.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCCh---hh----cCceEEEEecCcccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIETP---DR----RRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~~---~~----~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+..|+.++|+|+|||||||++.. +.+++.++... .. .+.+.++++++..+..+++.++++..
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~ 95 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLG 95 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHH
Confidence 56899999999999999999883 34445443321 11 35688899888888888999888642
Q ss_pred hh-------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 140 MD-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 140 ~~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
.. ......+|.. ...+..+..+|+|++||+.++++++.++++++||| +++|......+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~vgL~------~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~ 169 (363)
T TIGR01186 96 PELLGWPEQERKEKALELLKLVGLE------EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQ 169 (363)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcCCc------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 21 1112223321 23456778899999999999999999999999999 788999999999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH-HHHHch
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
+.+.++.+.. +.++|++||.++. ..+++.
T Consensus 170 ~~l~~l~~~~-~~Tii~vTHd~~ea~~~~dr 199 (363)
T TIGR01186 170 DELKKLQATL-QKTIVFITHDLDEAIRIGDR 199 (363)
T ss_pred HHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 9999886653 7899999999864 455543
No 134
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.51 E-value=4.9e-14 Score=143.69 Aligned_cols=156 Identities=19% Similarity=0.230 Sum_probs=109.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhh---h
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM---D 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~ 141 (573)
+..|++++++|||||||||++..+. +++.+... ....+.++++++.+.....+++.+++.... +
T Consensus 30 i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (306)
T PRK13537 30 VQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG 109 (306)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC
Confidence 5789999999999999999998432 23322211 112345788888887777788888875311 1
Q ss_pred hc---ccchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCC
Q 008221 142 VT---IGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (573)
Q Consensus 142 ~~---~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~ 215 (573)
.. ....+. ....+.-....++.+..+|+|+++|+.++++++.+|++++||| +++|......+.++++++.+.
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-- 187 (306)
T PRK13537 110 LSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-- 187 (306)
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--
Confidence 10 000010 0001111123456788899999999999999999999999999 889999999999999998543
Q ss_pred CcEEEEeccccc-HHHHHchh
Q 008221 216 DLKLVVMSATLE-AEKFQGYF 235 (573)
Q Consensus 216 ~~~iil~SATl~-~~~~~~~~ 235 (573)
+.++|+.||.++ .+.++++.
T Consensus 188 g~till~sH~l~e~~~~~d~i 208 (306)
T PRK13537 188 GKTILLTTHFMEEAERLCDRL 208 (306)
T ss_pred CCEEEEECCCHHHHHHhCCEE
Confidence 789999999986 45666543
No 135
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.50 E-value=6.6e-14 Score=136.03 Aligned_cols=150 Identities=21% Similarity=0.273 Sum_probs=102.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChh-------hcCceEEEEecCcccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+..|+.++|+|+|||||||++..+. +++..+.... ..+.+.++++.+......++.+++...
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 106 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP 106 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHH
Confidence 5689999999999999999998432 2332221100 123567778777666667888877532
Q ss_pred hhhc------ccchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 140 MDVT------IGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 140 ~~~~------~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.... ....+. +...+.-....+..+..+|+|+++|+.++++++.++++++||| +++|......+.++++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 186 (218)
T cd03255 107 LLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLREL 186 (218)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1100 000010 0000110112345677899999999999999999999999999 788889999999999998
Q ss_pred HHhCCCcEEEEecccccH
Q 008221 211 LKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~ 228 (573)
.+.. +..+|++||.++.
T Consensus 187 ~~~~-~~tii~~sH~~~~ 203 (218)
T cd03255 187 NKEA-GTTIVVVTHDPEL 203 (218)
T ss_pred HHhc-CCeEEEEECCHHH
Confidence 6632 6899999999864
No 136
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=6.8e-14 Score=144.81 Aligned_cols=150 Identities=17% Similarity=0.254 Sum_probs=111.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|+.++|+|||||||||+++.+ .+++..+.. ....+.+.++++.+..+..+++.++++.....
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~ 108 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGV 108 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCC
Confidence 568999999999999999999843 233333221 11235678888888888889999998753221
Q ss_pred ----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.....+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+...++++
T Consensus 109 ~~~~~~~~v~~~l~~~gl~------~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 182 (351)
T PRK11432 109 PKEERKQRVKEALELVDLA------GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIREL 182 (351)
T ss_pred CHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 111122221 22356778899999999999999999999999999 788889999999999998
Q ss_pred HHhCCCcEEEEecccccH-HHHHch
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
.+.. +.++|++||..+. ..+++.
T Consensus 183 ~~~~-g~tii~vTHd~~e~~~laD~ 206 (351)
T PRK11432 183 QQQF-NITSLYVTHDQSEAFAVSDT 206 (351)
T ss_pred HHhc-CCEEEEEcCCHHHHHHhCCE
Confidence 7654 7899999999854 355554
No 137
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.50 E-value=5.4e-14 Score=136.45 Aligned_cols=142 Identities=20% Similarity=0.328 Sum_probs=102.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh------hhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 105 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPL 105 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHH
Confidence 5789999999999999999998432 222221110 01235678888876666678888775321
Q ss_pred hh-------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 141 DV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 141 ~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
.. .....+|.. ...+..+..+|+|+++|+.++++++.++++++||| +++|......+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 179 (216)
T TIGR00960 106 RIIGVPPRDANERVSAALEKVGLE------GKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMR 179 (216)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCh------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 10 011112211 22355677899999999999999999999999999 8899999999999
Q ss_pred HHHHHHHhCCCcEEEEeccccc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~ 227 (573)
+++++.+. +..+|++||.++
T Consensus 180 ~l~~~~~~--~~tii~vsH~~~ 199 (216)
T TIGR00960 180 LFEEFNRR--GTTVLVATHDIN 199 (216)
T ss_pred HHHHHHHC--CCEEEEEeCCHH
Confidence 99988543 788999999875
No 138
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.50 E-value=3.6e-13 Score=147.18 Aligned_cols=339 Identities=18% Similarity=0.221 Sum_probs=185.2
Q ss_pred ChHHHHHHHHhcCCCChHHHHHHH--HHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCccccc
Q 008221 52 SQRYYEILEKRKSLPVWQQKEEFL--QVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAA 129 (573)
Q Consensus 52 ~~~~~~~l~~~~~lp~~~~q~~~i--~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~ 129 (573)
+.-.....+..|.+..|..|.+.+ +.+.+++.++...||+.|||...-..++...... ++....++|..--...-
T Consensus 209 ~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~---rr~~llilp~vsiv~Ek 285 (1008)
T KOG0950|consen 209 TKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---RRNVLLILPYVSIVQEK 285 (1008)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH---hhceeEecceeehhHHH
Confidence 333334456678899999999887 5578999999999999999975443222211100 01111122211000000
Q ss_pred ccHHHHHHHhhhhcccchhceeeeecccc-cccccccccCHHH---HHHHHhcccccCCCcEEEEeCCCcCc-ccHH-HH
Q 008221 130 MSVSRRVAEEMDVTIGEEVGYSIRFEDCS-SARTVLKYLTDGM---LLREAMTDPLLERYKVIVLDEAHERT-LATD-VL 203 (573)
Q Consensus 130 ~~v~~~v~~~~~~~~~~~vg~~~~~~~~~-~~~~~i~~lT~G~---l~r~~~~~~ll~~~~~lILDEa~~r~-~~~d-~l 203 (573)
.+-...+....|..+-...|.. .... .....+.++|-.+ +...++...-+....++|+||-|.-. -..+ .+
T Consensus 286 ~~~l~~~~~~~G~~ve~y~g~~---~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~l 362 (1008)
T KOG0950|consen 286 ISALSPFSIDLGFPVEEYAGRF---PPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAIL 362 (1008)
T ss_pred HhhhhhhccccCCcchhhcccC---CCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHH
Confidence 0000111112222221111111 0000 1112233344322 22233333346778999999977400 1112 22
Q ss_pred HHHHHHHHHhC--CCcEEEEecccc-cHHHHHchhCCCCeeeecCcccCCc--ccccCCC---chhHHHHHHHHHHH---
Q 008221 204 FGLLKEVLKNR--PDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVE--IFYTQEP---ERDYLEAAIRTVVQ--- 272 (573)
Q Consensus 204 l~~l~~l~~~~--~~~~iil~SATl-~~~~~~~~~~~~~~i~v~g~~~~v~--~~y~~~~---~~~~~~~~~~~l~~--- 272 (573)
..++.+++-.. ...++|.||||+ +...+++++.. .+.. .+..||. .+-.... +.+. ...+..+..
T Consensus 363 E~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A-~~y~--t~fRPv~L~E~ik~G~~i~~~~r-~~~lr~ia~l~~ 438 (1008)
T KOG0950|consen 363 ELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDA-FVYT--TRFRPVPLKEYIKPGSLIYESSR-NKVLREIANLYS 438 (1008)
T ss_pred HHHHHHHHHhccccceeEeeeecccCChHHHHHHhhh-hhee--cccCcccchhccCCCcccccchh-hHHHHHhhhhhh
Confidence 23333333221 246799999999 45666666542 1111 1111211 1100000 0000 001111110
Q ss_pred --------------HhhcCCCC-CEEEecCcHHHHHHHHHHHHHHHhhc----------------------C-------C
Q 008221 273 --------------IHMCEPSG-DILVFLTGEEEIEDACRKITKEITNM----------------------G-------D 308 (573)
Q Consensus 273 --------------i~~~~~~g-~iLVFl~~~~~i~~~~~~L~~~~~~~----------------------~-------~ 308 (573)
....-+.| ++|||||++..++.++..+....... . .
T Consensus 439 ~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~ 518 (1008)
T KOG0950|consen 439 SNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLA 518 (1008)
T ss_pred hhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHh
Confidence 00111223 59999999999999887765432110 0 0
Q ss_pred CCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccce
Q 008221 309 QVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLL 388 (573)
Q Consensus 309 ~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~ 388 (573)
..-.+-+...|++++.++|+-+-..|+.|. ..|++||+..+.|+..|..+++|-.-++-..
T Consensus 519 ~ti~~GvAyHhaGLT~eER~~iE~afr~g~-------i~vl~aTSTlaaGVNLPArRVIiraP~~g~~------------ 579 (1008)
T KOG0950|consen 519 KTIPYGVAYHHAGLTSEEREIIEAAFREGN-------IFVLVATSTLAAGVNLPARRVIIRAPYVGRE------------ 579 (1008)
T ss_pred eeccccceecccccccchHHHHHHHHHhcC-------eEEEEecchhhccCcCCcceeEEeCCccccc------------
Confidence 011234678899999999999988999998 8999999999999999999999965442221
Q ss_pred eeeccHhhHHHhccccCCC---CCCeEEeccchhhh
Q 008221 389 VSPISKASAHQRSGRAGRT---QPGKCFRLYTEKSF 421 (573)
Q Consensus 389 ~~p~s~~~~~qR~GRaGR~---~~G~~~~l~t~~~~ 421 (573)
+.+..+|.|++|||||+ .-|.++..+.+.+.
T Consensus 580 --~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 580 --FLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred --hhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 67899999999999999 46999998887664
No 139
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=4.5e-14 Score=137.03 Aligned_cols=150 Identities=22% Similarity=0.319 Sum_probs=109.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCC----ChhhcCceEEEEecCcc-cccccHHHHHHHhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIE----TPDRRRKMMIACTQPRR-VAAMSVSRRVAEEM 140 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~----~~~~~~~~~i~~t~p~~-~~~~~v~~~v~~~~ 140 (573)
.+..|+.++++|+|||||||++.. +.+++.... ....++.++++++.|.. +..-+|.+.++...
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~ 105 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL 105 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhch
Confidence 357899999999999999999873 233333321 12234568899998864 44567777775422
Q ss_pred h-------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 141 D-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 141 ~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
. ......+|.. ...+..+..+|+|++||+.++..++.+|+++|||| +.+|......+++
T Consensus 106 ~n~g~~~~e~~~rv~~~l~~vgl~------~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~ 179 (235)
T COG1122 106 ENLGLPREEIEERVAEALELVGLE------ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE 179 (235)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCch------hhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 1 1122233332 22467788999999999999999999999999999 8899999999999
Q ss_pred HHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++++.+.. +.++|++||.++. ..+++
T Consensus 180 ~l~~L~~~~-~~tii~~tHd~~~~~~~ad 207 (235)
T COG1122 180 LLKKLKEEG-GKTIIIVTHDLELVLEYAD 207 (235)
T ss_pred HHHHHHhcC-CCeEEEEeCcHHHHHhhCC
Confidence 999997764 6899999998863 33443
No 140
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.49 E-value=8.2e-14 Score=144.41 Aligned_cols=150 Identities=20% Similarity=0.282 Sum_probs=111.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|+.++|.|||||||||++..+ .+++..+.. ....+.++++++.+..+..+++.++++.....
T Consensus 27 i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~ 106 (353)
T TIGR03265 27 VKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGM 106 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCC
Confidence 568999999999999999999833 344433221 12235688899988888889999998643211
Q ss_pred ----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.....+|+. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+...++++
T Consensus 107 ~~~~~~~~~~~~l~~l~L~------~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l 180 (353)
T TIGR03265 107 GRAEVAERVAELLDLVGLP------GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180 (353)
T ss_pred CHHHHHHHHHHHHHHcCCC------chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 011112211 22356788899999999999999999999999999 788888889999999998
Q ss_pred HHhCCCcEEEEecccccH-HHHHch
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
.+.. +.++|++||..+. ..+++.
T Consensus 181 ~~~~-~~tvi~vTHd~~ea~~l~d~ 204 (353)
T TIGR03265 181 QRRL-GVTTIMVTHDQEEALSMADR 204 (353)
T ss_pred HHhc-CCEEEEEcCCHHHHHHhCCE
Confidence 7654 7899999999863 445543
No 141
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.49 E-value=3.8e-14 Score=129.59 Aligned_cols=157 Identities=18% Similarity=0.245 Sum_probs=105.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHh---h
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEE---M 140 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~---~ 140 (573)
.+.+|+++++.|+||+||||+++. +++++.+... ..-++.+++++-+-....-+++-+++... .
T Consensus 24 ~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~ 103 (245)
T COG4555 24 EAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN 103 (245)
T ss_pred EeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh
Confidence 467899999999999999999883 2334443221 22344566776443344556666655321 1
Q ss_pred hhc---ccchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhC
Q 008221 141 DVT---IGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNR 214 (573)
Q Consensus 141 ~~~---~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~ 214 (573)
+.. +...+. ...+++-....+++...+|.|++|++.++++++++|+++|+|| .++|......+.+.++++..
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-- 181 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-- 181 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc--
Confidence 110 000000 1111222234467778899999999999999999999999999 67777888888888888744
Q ss_pred CCcEEEEeccccc-HHHHHchh
Q 008221 215 PDLKLVVMSATLE-AEKFQGYF 235 (573)
Q Consensus 215 ~~~~iil~SATl~-~~~~~~~~ 235 (573)
+++.+|+.||.|+ ++.+++.+
T Consensus 182 egr~viFSSH~m~EvealCDrv 203 (245)
T COG4555 182 EGRAVIFSSHIMQEVEALCDRV 203 (245)
T ss_pred CCcEEEEecccHHHHHHhhheE
Confidence 3889999999995 56687654
No 142
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.49 E-value=8.6e-14 Score=133.88 Aligned_cols=148 Identities=21% Similarity=0.274 Sum_probs=102.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChhhcCceEEEEecCc-ccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPR-RVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~~--- 142 (573)
+..|+.++|+|+|||||||++..+. +++..+......+.+.++++.+. .....++.+++......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~ 102 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDA 102 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCc
Confidence 5689999999999999999998432 22222111111234667777753 23345777777432110
Q ss_pred ------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhC
Q 008221 143 ------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNR 214 (573)
Q Consensus 143 ------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~ 214 (573)
.....+|.. ...+..+..+|+|+++|+.++++++.+|++++||| +++|......+.++++++.+.
T Consensus 103 ~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~- 175 (205)
T cd03226 103 GNEQAETVLKDLDLY------ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ- 175 (205)
T ss_pred cHHHHHHHHHHcCCc------hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-
Confidence 111112211 22356677899999999999999999999999999 788989999999999988653
Q ss_pred CCcEEEEecccccH-HHHHc
Q 008221 215 PDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 215 ~~~~iil~SATl~~-~~~~~ 233 (573)
+..+|++||.++. ..+++
T Consensus 176 -~~tii~~sH~~~~~~~~~d 194 (205)
T cd03226 176 -GKAVIVITHDYEFLAKVCD 194 (205)
T ss_pred -CCEEEEEeCCHHHHHHhCC
Confidence 7899999998753 33443
No 143
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=1.1e-13 Score=134.79 Aligned_cols=147 Identities=20% Similarity=0.285 Sum_probs=103.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhh----
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV---- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~---- 142 (573)
+..|+.++|+|+|||||||++..+. +++.++. .....+.++++.+......++.+++......
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 104 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT--GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVP 104 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc--cccCcEEEEecccccccCCCHHHHHHHHHHHcCCC
Confidence 5689999999999999999998543 1111111 1123467778777665667888776432110
Q ss_pred ---------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHH
Q 008221 143 ---------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (573)
Q Consensus 143 ---------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~ 211 (573)
.....+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......+.++++++.
T Consensus 105 ~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~ 178 (220)
T cd03293 105 KAEARERAEELLELVGLS------GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIW 178 (220)
T ss_pred HHHHHHHHHHHHHHcCCh------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 011111211 12345677899999999999999999999999999 8899999999999999886
Q ss_pred HhCCCcEEEEeccccc-HHHHHc
Q 008221 212 KNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 212 ~~~~~~~iil~SATl~-~~~~~~ 233 (573)
+.. +..+|++||.++ ...+++
T Consensus 179 ~~~-~~tiii~sH~~~~~~~~~d 200 (220)
T cd03293 179 RET-GKTVLLVTHDIDEAVFLAD 200 (220)
T ss_pred HHc-CCEEEEEecCHHHHHHhCC
Confidence 543 679999999885 344443
No 144
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=9.5e-14 Score=136.52 Aligned_cols=150 Identities=23% Similarity=0.319 Sum_probs=105.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh------hhcCceEEEEecCcccccccHHHHHHHh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.+..|+.++|+|+|||||||++..+. +++..+... ...+.+.++++.+......++.+++...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 101 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP 101 (235)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHH
Confidence 36789999999999999999998432 233222110 1123467788777666667888877532
Q ss_pred hhh--------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHH
Q 008221 140 MDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (573)
Q Consensus 140 ~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~l 203 (573)
... .....+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l 175 (235)
T cd03261 102 LREHTRLSEEEIREIVLEKLEAVGLR------GAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVI 175 (235)
T ss_pred HhhccCCCHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 110 001111211 12356677899999999999999999999999999 78888899999
Q ss_pred HHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 204 FGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 204 l~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+++++.+.. +..+|++||.++. ..+++
T Consensus 176 ~~~l~~~~~~~-~~tvi~vsH~~~~~~~~~d 205 (235)
T cd03261 176 DDLIRSLKKEL-GLTSIMVTHDLDTAFAIAD 205 (235)
T ss_pred HHHHHHHHHhc-CcEEEEEecCHHHHHHhcC
Confidence 99999886543 6799999998863 34444
No 145
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.49 E-value=1e-13 Score=142.91 Aligned_cols=156 Identities=17% Similarity=0.217 Sum_probs=109.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhh---h
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM---D 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~ 141 (573)
+..|++++++|||||||||++..+. +++.+... ....+.++++++.+.....+++.+++.... +
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 143 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG 143 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC
Confidence 6789999999999999999998432 33332211 112345788888877767778888774311 1
Q ss_pred hc---ccchh-ceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCC
Q 008221 142 VT---IGEEV-GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (573)
Q Consensus 142 ~~---~~~~v-g~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~ 215 (573)
.. ....+ .+...+.-....++.+..+|+|+++|+.++++++.+|+++|||| +++|......+.++++++.+.
T Consensus 144 ~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~-- 221 (340)
T PRK13536 144 MSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-- 221 (340)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 00 00000 00001111122466788999999999999999999999999999 889999999999999998653
Q ss_pred CcEEEEecccccH-HHHHchh
Q 008221 216 DLKLVVMSATLEA-EKFQGYF 235 (573)
Q Consensus 216 ~~~iil~SATl~~-~~~~~~~ 235 (573)
+.++|+.||.++. +.++++.
T Consensus 222 g~tilisSH~l~e~~~~~d~i 242 (340)
T PRK13536 222 GKTILLTTHFMEEAERLCDRL 242 (340)
T ss_pred CCEEEEECCCHHHHHHhCCEE
Confidence 7899999999863 5566543
No 146
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.48 E-value=1e-13 Score=144.42 Aligned_cols=156 Identities=22% Similarity=0.288 Sum_probs=111.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhhc--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT-- 143 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~-- 143 (573)
+..|++++|.|||||||||++..+ .+++..+.. ....+.+.++++.+..+..+++.++++......
T Consensus 37 i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~ 116 (375)
T PRK09452 37 INNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKT 116 (375)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCC
Confidence 568999999999999999999833 334433221 112356888898888888899999986532210
Q ss_pred ----ccchhceeeee-cccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCC
Q 008221 144 ----IGEEVGYSIRF-EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPD 216 (573)
Q Consensus 144 ----~~~~vg~~~~~-~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~ 216 (573)
....+...... .-....+..+..+|+|++||+.++++++.+|++++||| +++|......+...|+++.+.. +
T Consensus 117 ~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g 195 (375)
T PRK09452 117 PAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-G 195 (375)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-C
Confidence 00011100000 00123456778899999999999999999999999999 7888888899999999987754 7
Q ss_pred cEEEEecccccH-HHHHch
Q 008221 217 LKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 217 ~~iil~SATl~~-~~~~~~ 234 (573)
.++|++||..+. ..+++.
T Consensus 196 ~tiI~vTHd~~ea~~laDr 214 (375)
T PRK09452 196 ITFVFVTHDQEEALTMSDR 214 (375)
T ss_pred CEEEEEeCCHHHHHHhCCE
Confidence 899999998853 445543
No 147
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=1e-13 Score=134.12 Aligned_cols=150 Identities=20% Similarity=0.296 Sum_probs=104.0
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh--
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (573)
.+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++......
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 101 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG 101 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC
Confidence 36789999999999999999998432 22222111 01123466777777655567887777432110
Q ss_pred -----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 143 -----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 143 -----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
.....+|. ....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.+++++
T Consensus 102 ~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03259 102 VPKAEIRARVRELLELVGL------EGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKE 175 (213)
T ss_pred CCHHHHHHHHHHHHHHcCC------hhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 01111111 112345677899999999999999999999999999 88898999999999998
Q ss_pred HHHhCCCcEEEEecccccH-HHHHc
Q 008221 210 VLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+.+.. +..+|++||.++. ..+++
T Consensus 176 ~~~~~-~~tii~~sH~~~~~~~~~d 199 (213)
T cd03259 176 LQREL-GITTIYVTHDQEEALALAD 199 (213)
T ss_pred HHHHc-CCEEEEEecCHHHHHHhcC
Confidence 86643 6799999998753 34443
No 148
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.48 E-value=9.4e-14 Score=141.62 Aligned_cols=150 Identities=17% Similarity=0.255 Sum_probs=107.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhh---
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM--- 140 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--- 140 (573)
.+..|++++++|||||||||+++.+. +++.++.. ....+.++++++.+.....+++.+++....
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 94 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY 94 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence 35789999999999999999998432 22322211 111234677888777667778888774321
Q ss_pred hh----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 141 DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 141 ~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
+. .....+|.. ...++.+..+|+|+++|+.++++++.+|+++|||| +++|......+.++++
T Consensus 95 ~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 168 (302)
T TIGR01188 95 GLPKDEAEERAEELLELFELG------EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIR 168 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCCh------hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 10 011112211 22356778899999999999999999999999999 8899999999999999
Q ss_pred HHHHhCCCcEEEEecccccH-HHHHch
Q 008221 209 EVLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
++.+. +.++|+.||.++. +.+++.
T Consensus 169 ~~~~~--g~tvi~~sH~~~~~~~~~d~ 193 (302)
T TIGR01188 169 ALKEE--GVTILLTTHYMEEADKLCDR 193 (302)
T ss_pred HHHhC--CCEEEEECCCHHHHHHhCCE
Confidence 98654 7899999999853 455543
No 149
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=1.3e-13 Score=144.02 Aligned_cols=150 Identities=21% Similarity=0.305 Sum_probs=111.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|++++|.|||||||||+++.+ .+++..+.. ....+.++++++++..+..+++.++++.....
T Consensus 42 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~ 121 (377)
T PRK11607 42 IYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKL 121 (377)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC
Confidence 568999999999999999999843 333333221 12235688999998888889999998643221
Q ss_pred ----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.....+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+...++++
T Consensus 122 ~~~~~~~~v~~~l~~l~L~------~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 195 (377)
T PRK11607 122 PKAEIASRVNEMLGLVHMQ------EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDI 195 (377)
T ss_pred CHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 011112211 23356778899999999999999999999999999 788888888888888888
Q ss_pred HHhCCCcEEEEecccccH-HHHHch
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
.+.. +.++|++||..+. ..+++.
T Consensus 196 ~~~~-g~tii~vTHd~~ea~~laDr 219 (377)
T PRK11607 196 LERV-GVTCVMVTHDQEEAMTMAGR 219 (377)
T ss_pred HHhc-CCEEEEEcCCHHHHHHhCCE
Confidence 7654 7899999999863 455553
No 150
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.48 E-value=1.3e-13 Score=133.56 Aligned_cols=149 Identities=21% Similarity=0.327 Sum_probs=103.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh------hhcCceEEEEecCcccccccHHHHHHHh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++...
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 103 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALP 103 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHH
Confidence 36789999999999999999998432 222221110 1123567778777665567887776432
Q ss_pred hhh-------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 140 MDV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 140 ~~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
... .....+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 177 (214)
T TIGR02673 104 LEVRGKKEREIQRRVGAALRQVGLE------HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL 177 (214)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCh------hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHH
Confidence 110 011111211 12345667899999999999999999999999999 888999999999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++++++.+. +..+|++||.++. ..+++
T Consensus 178 ~~l~~~~~~--~~tii~~tH~~~~~~~~~d 205 (214)
T TIGR02673 178 DLLKRLNKR--GTTVIVATHDLSLVDRVAH 205 (214)
T ss_pred HHHHHHHHc--CCEEEEEeCCHHHHHHhcC
Confidence 999987653 6899999998753 33443
No 151
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=1.2e-13 Score=136.33 Aligned_cols=151 Identities=21% Similarity=0.269 Sum_probs=102.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh------hhcCceEEEEecCcccccccHHHHHHHh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 102 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSG 102 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhh
Confidence 35789999999999999999988432 223222110 1123467777777666667888877431
Q ss_pred hhh--------------cccchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 140 MDV--------------TIGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 140 ~~~--------------~~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
... .....+. +...+.-....+..+..+|+|+++|+.++++++.+++++|||| +++|......
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 182 (241)
T cd03256 103 RLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ 182 (241)
T ss_pred hcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHH
Confidence 100 0000000 0000000112345677899999999999999999999999999 7888899999
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccH
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+.++++++.+.. +..+|++||.++.
T Consensus 183 l~~~l~~~~~~~-~~tii~~tH~~~~ 207 (241)
T cd03256 183 VMDLLKRINREE-GITVIVSLHQVDL 207 (241)
T ss_pred HHHHHHHHHHhc-CCEEEEEeCCHHH
Confidence 999999886543 6799999998864
No 152
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.47 E-value=1.3e-12 Score=147.15 Aligned_cols=296 Identities=17% Similarity=0.219 Sum_probs=183.7
Q ss_pred HHHHHHHHHHh----cCC--EEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 69 QQKEEFLQVLK----ANQ--VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 69 ~~q~~~i~~i~----~g~--~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
+=|...|+.+. +++ +=+|||.-|=|||-......+.... . +.+..+++||.-+ +.+-++++.+.+.
T Consensus 597 ~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-~---GKQVAvLVPTTlL---A~QHy~tFkeRF~- 668 (1139)
T COG1197 597 PDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-D---GKQVAVLVPTTLL---AQQHYETFKERFA- 668 (1139)
T ss_pred HHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc-C---CCeEEEEcccHHh---HHHHHHHHHHHhc-
Confidence 34555555553 333 5678999999999855543332211 1 1233445555444 4444455544321
Q ss_pred cccchhceeeeecccc----------cccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHH
Q 008221 143 TIGEEVGYSIRFEDCS----------SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK 212 (573)
Q Consensus 143 ~~~~~vg~~~~~~~~~----------~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~ 212 (573)
...-.|+.-.||.... ...-.|.+.|.- ++..+.-..+..++|+||=|.--... -+.||++.
T Consensus 669 ~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~kdv~FkdLGLlIIDEEqRFGVk~---KEkLK~Lr- 740 (1139)
T COG1197 669 GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLSKDVKFKDLGLLIIDEEQRFGVKH---KEKLKELR- 740 (1139)
T ss_pred CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhCCCcEEecCCeEEEechhhcCccH---HHHHHHHh-
Confidence 1111222222332211 112234444432 22333348899999999965421222 34455553
Q ss_pred hCCCcEEEEecccccHHHHH---chhCCCCeeee-cCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCc
Q 008221 213 NRPDLKLVVMSATLEAEKFQ---GYFYGAPLMKV-PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTG 288 (573)
Q Consensus 213 ~~~~~~iil~SATl~~~~~~---~~~~~~~~i~v-~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~ 288 (573)
.+.-++-+|||.=...+. .-..+-.+|.. |...+||+.|..+....-.-++..+. + ..+|++-.-.|.
T Consensus 741 --~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~RE---l---~RgGQvfYv~Nr 812 (1139)
T COG1197 741 --ANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRE---L---LRGGQVFYVHNR 812 (1139)
T ss_pred --ccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHH---H---hcCCEEEEEecc
Confidence 368899999997332222 12223333433 34457888887764432222222222 1 357888888899
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEE-E
Q 008221 289 EEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVY-V 367 (573)
Q Consensus 289 ~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~-V 367 (573)
.++|+.++..|+.. .|..++...||.|+..+-++++..|-+|. ..|||||.|.|+|||||++.- +
T Consensus 813 V~~Ie~~~~~L~~L-------VPEarI~vaHGQM~e~eLE~vM~~F~~g~-------~dVLv~TTIIEtGIDIPnANTiI 878 (1139)
T COG1197 813 VESIEKKAERLREL-------VPEARIAVAHGQMRERELEEVMLDFYNGE-------YDVLVCTTIIETGIDIPNANTII 878 (1139)
T ss_pred hhhHHHHHHHHHHh-------CCceEEEEeecCCCHHHHHHHHHHHHcCC-------CCEEEEeeeeecCcCCCCCceEE
Confidence 99999999999886 46889999999999999999999999998 899999999999999999954 4
Q ss_pred EcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhh
Q 008221 368 IDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (573)
Q Consensus 368 Id~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (573)
|+ +.. ----++--|=.||.||. +.|.||-||....
T Consensus 879 Ie---------~AD---------~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 879 IE---------RAD---------KFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred Ee---------ccc---------cccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 43 000 12235666999999999 8899999998643
No 153
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.47 E-value=1.5e-13 Score=142.40 Aligned_cols=156 Identities=21% Similarity=0.245 Sum_probs=110.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|+.++|+|||||||||+++.+ .+++.++.. ....+.+.++++.+.....+++.+++......
T Consensus 25 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~ 104 (353)
T PRK10851 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPR 104 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccc
Confidence 568999999999999999999843 344433221 11234678888888777788999988643211
Q ss_pred ----c---ccchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHH
Q 008221 143 ----T---IGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLK 212 (573)
Q Consensus 143 ----~---~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~ 212 (573)
. ....+. ....+.-....+..+..+|+|++||+.++++++.+|++++||| +++|......+...++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 184 (353)
T PRK10851 105 RERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE 184 (353)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 0 000110 0000111122356788899999999999999999999999999 78888899999999999876
Q ss_pred hCCCcEEEEecccccH-HHHHch
Q 008221 213 NRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 213 ~~~~~~iil~SATl~~-~~~~~~ 234 (573)
.. +.++|++||.++. ..+++.
T Consensus 185 ~~-g~tii~vTHd~~ea~~~~Dr 206 (353)
T PRK10851 185 EL-KFTSVFVTHDQEEAMEVADR 206 (353)
T ss_pred hc-CCEEEEEeCCHHHHHHhCCE
Confidence 53 7899999999853 455543
No 154
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=1.6e-13 Score=132.69 Aligned_cols=156 Identities=17% Similarity=0.309 Sum_probs=105.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhhcc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (573)
.+..|+.++|.|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++........
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 99 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL 99 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc
Confidence 46789999999999999999998432 22222111 1112356778888776666788887753211000
Q ss_pred ------cchhceeee-ecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCC
Q 008221 145 ------GEEVGYSIR-FEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (573)
Q Consensus 145 ------~~~vg~~~~-~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~ 215 (573)
...+..... +.-....+..+..+|+|+++|+.++++++.+++++|||| +++|....+.+.++++++.+..
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~- 178 (211)
T cd03298 100 KLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET- 178 (211)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-
Confidence 000000000 000112345677899999999999999999999999999 7888899999999999886543
Q ss_pred CcEEEEecccccH-HHHHc
Q 008221 216 DLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 216 ~~~iil~SATl~~-~~~~~ 233 (573)
+..+|++||.++. ..+++
T Consensus 179 ~~tii~~sH~~~~~~~~~d 197 (211)
T cd03298 179 KMTVLMVTHQPEDAKRLAQ 197 (211)
T ss_pred CCEEEEEecCHHHHHhhhC
Confidence 7899999998853 34444
No 155
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1.5e-13 Score=143.64 Aligned_cols=149 Identities=15% Similarity=0.206 Sum_probs=108.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++.+.....+++.+++......
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~ 105 (369)
T PRK11000 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA 105 (369)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCC
Confidence 5689999999999999999998432 22322211 11124577888888777778999888643210
Q ss_pred ----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.....+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+.+.++++
T Consensus 106 ~~~~~~~~~~~~l~~lgL~------~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l 179 (369)
T PRK11000 106 KKEEINQRVNQVAEVLQLA------HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL 179 (369)
T ss_pred CHHHHHHHHHHHHHHcCCh------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 011112211 22356778899999999999999999999999999 788889899999999998
Q ss_pred HHhCCCcEEEEecccccH-HHHHc
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+.. +.++|++||.++. ..+++
T Consensus 180 ~~~~-g~tvI~vTHd~~~~~~~~d 202 (369)
T PRK11000 180 HKRL-GRTMIYVTHDQVEAMTLAD 202 (369)
T ss_pred HHHh-CCEEEEEeCCHHHHHHhCC
Confidence 7653 6899999999853 44554
No 156
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.47 E-value=1.3e-13 Score=130.44 Aligned_cols=150 Identities=22% Similarity=0.307 Sum_probs=111.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC--hh--hcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET--PD--RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~--~~--~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
+..|++++++||||+||||+|+ .+++++.++.. +. ...++.-.+|.++.+..++|.+++.-....
T Consensus 27 v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~ 106 (250)
T COG0411 27 VRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHA 106 (250)
T ss_pred EcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhh
Confidence 5789999999999999999998 34555655433 11 233455667788889999999998543221
Q ss_pred c-------------------------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCc
Q 008221 143 T-------------------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHE 195 (573)
Q Consensus 143 ~-------------------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~ 195 (573)
. +.+.+|.. ...+.....+|.|++.++-++++++.+|++|+||| |++
T Consensus 107 ~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~------~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGl 180 (250)
T COG0411 107 RLGLSGLLGRPRARKEEREARERARELLEFVGLG------ELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGL 180 (250)
T ss_pred hhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc------hhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCC
Confidence 1 11122222 22345556799999999999999999999999999 888
Q ss_pred CcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHch
Q 008221 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 196 r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
.....+.+.++++++.+.. +.+++++-|.|+. -.+++.
T Consensus 181 n~~e~~~l~~~i~~i~~~~-g~tillIEHdM~~Vm~l~dr 219 (250)
T COG0411 181 NPEETEELAELIRELRDRG-GVTILLIEHDMKLVMGLADR 219 (250)
T ss_pred CHHHHHHHHHHHHHHHhcC-CcEEEEEEeccHHHhhhccE
Confidence 8888999999999987653 7999999999974 445553
No 157
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.47 E-value=3.8e-14 Score=114.03 Aligned_cols=71 Identities=24% Similarity=0.291 Sum_probs=68.7
Q ss_pred CeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeee
Q 008221 312 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 391 (573)
Q Consensus 312 ~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p 391 (573)
++.+..+||++++.+|..+++.|..+. .+||+||++++.|+|+|++++||.++. |
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~-------~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~ 61 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGE-------IRVLIATDILGEGIDLPDASHVIFYDP------------------P 61 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTS-------SSEEEESCGGTTSSTSTTESEEEESSS------------------E
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccC-------ceEEEeecccccccccccccccccccc------------------C
Confidence 788999999999999999999999988 799999999999999999999999999 9
Q ss_pred ccHhhHHHhccccCCC
Q 008221 392 ISKASAHQRSGRAGRT 407 (573)
Q Consensus 392 ~s~~~~~qR~GRaGR~ 407 (573)
.+..+|.||+||+||.
T Consensus 62 ~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 62 WSPEEYIQRIGRAGRI 77 (78)
T ss_dssp SSHHHHHHHHTTSSTT
T ss_pred CCHHHHHHHhhcCCCC
Confidence 9999999999999995
No 158
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.46 E-value=1.8e-13 Score=129.93 Aligned_cols=142 Identities=21% Similarity=0.352 Sum_probs=99.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-----hhhcCceEEEEecCc-ccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-----PDRRRKMMIACTQPR-RVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-----~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~ 140 (573)
+..|++++|+|+|||||||++..+ .+++.++.. ....+.+.++++++. .....++.+++....
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~ 94 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGP 94 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHH
Confidence 678999999999999999998833 223322110 011234667777763 233457777764321
Q ss_pred h---h----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 141 D---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 141 ~---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
. . .....+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~ 168 (190)
T TIGR01166 95 LNLGLSEAEVERRVREALTAVGAS------GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168 (190)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCch------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 0 0 011111211 22356678899999999999999999999999999 7888899999999
Q ss_pred HHHHHHHhCCCcEEEEeccccc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~ 227 (573)
+++++.+. +..+|++||.++
T Consensus 169 ~l~~~~~~--~~tili~sH~~~ 188 (190)
T TIGR01166 169 ILRRLRAE--GMTVVISTHDVD 188 (190)
T ss_pred HHHHHHHc--CCEEEEEeeccc
Confidence 99988653 789999999864
No 159
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=2e-12 Score=143.79 Aligned_cols=144 Identities=12% Similarity=0.023 Sum_probs=99.8
Q ss_pred CCCCCChHHHHHHH-----HhcCCC---ChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceE
Q 008221 47 NGKPYSQRYYEILE-----KRKSLP---VWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMM 118 (573)
Q Consensus 47 ~~~~l~~~~~~~l~-----~~~~lp---~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~ 118 (573)
+.+.+..+..+.+. .+|+.. ++++|.++++.+..++.++..++||+|||+++..+++.... .. ....+
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL-~g---~~v~I 140 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNAL-TG---KPVHL 140 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHh-hc---CCeEE
Confidence 34466666666554 455544 59999999999999999999999999999999888775432 11 12456
Q ss_pred EEEecCcccccccHHHHHHHhhhhcccchhceeeeecccccccccccccCHHHH-HHHHhcccc-cC-------CCcEEE
Q 008221 119 IACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGML-LREAMTDPL-LE-------RYKVIV 189 (573)
Q Consensus 119 i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l-~r~~~~~~l-l~-------~~~~lI 189 (573)
++|++.++.+....+..+.+.++.+++..+|..............|.+.|||++ ..++..+.+ ++ ...++|
T Consensus 141 VTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~I 220 (970)
T PRK12899 141 VTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAI 220 (970)
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEE
Confidence 677777777766677777776776666655533221211222467899999999 777765533 32 458999
Q ss_pred EeCCC
Q 008221 190 LDEAH 194 (573)
Q Consensus 190 LDEa~ 194 (573)
+||||
T Consensus 221 IDEAD 225 (970)
T PRK12899 221 IDEVD 225 (970)
T ss_pred Eechh
Confidence 99987
No 160
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=2.3e-13 Score=133.61 Aligned_cols=145 Identities=19% Similarity=0.299 Sum_probs=103.3
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCCh--h----h-cCceEEEEecCcccccccHHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP--D----R-RRKMMIACTQPRRVAAMSVSRRVAE 138 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~--~----~-~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (573)
.+..|+.++|+|+|||||||++..+ .+++.++... . . .+.+.++++.+......++.+++..
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 110 (233)
T PRK11629 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAM 110 (233)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHH
Confidence 3578999999999999999999843 2333222110 0 1 1357788887766666788887743
Q ss_pred hhh-------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHH
Q 008221 139 EMD-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (573)
Q Consensus 139 ~~~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~l 203 (573)
... ......+|.. ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l 184 (233)
T PRK11629 111 PLLIGKKKPAEINSRALEMLAAVGLE------HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSI 184 (233)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCc------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 210 0111112211 12345677899999999999999999999999999 88898999999
Q ss_pred HHHHHHHHHhCCCcEEEEecccccH
Q 008221 204 FGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 204 l~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
.++++++.+.. +..+|++||.++.
T Consensus 185 ~~~l~~~~~~~-g~tvii~sH~~~~ 208 (233)
T PRK11629 185 FQLLGELNRLQ-GTAFLVVTHDLQL 208 (233)
T ss_pred HHHHHHHHHhC-CCEEEEEeCCHHH
Confidence 99999886543 6899999998854
No 161
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=2e-13 Score=141.41 Aligned_cols=149 Identities=23% Similarity=0.363 Sum_probs=107.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCCh------hhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
+..|+.++|+|+|||||||+++.+ .+++.++... ...+.+.++++++......++.+++....
T Consensus 28 i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~ 107 (343)
T PRK11153 28 IPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPL 107 (343)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHH
Confidence 568999999999999999999843 2333322110 01345788888887666788888875321
Q ss_pred hh-------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 141 DV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 141 ~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
.. .....+|.. ...+..+..+|+|+++|+.++++++.+|++++||| +++|......+++
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~ 181 (343)
T PRK11153 108 ELAGTPKAEIKARVTELLELVGLS------DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181 (343)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCc------hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 10 011112211 22356677899999999999999999999999999 8899999999999
Q ss_pred HHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++++.+.. +.++|++||.++. ..+++
T Consensus 182 ~L~~l~~~~-g~tiilvtH~~~~i~~~~d 209 (343)
T PRK11153 182 LLKDINREL-GLTIVLITHEMDVVKRICD 209 (343)
T ss_pred HHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 999987643 6899999999863 34444
No 162
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.46 E-value=2e-13 Score=143.24 Aligned_cols=155 Identities=18% Similarity=0.220 Sum_probs=107.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
+..|++++++|||||||||+++.+ .+++..+.. ....+.+.++++.+.....+++.+++...+..
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~ 105 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPH 105 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchh
Confidence 578999999999999999999843 233322221 12234577788777666678888877532110
Q ss_pred --ccc-------chhceeeee-cccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 --TIG-------EEVGYSIRF-EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 --~~~-------~~vg~~~~~-~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
... ..+...... +-....++.+..+|+|++||+.++++++.+|++++||| +++|......++.+|+++
T Consensus 106 ~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l 185 (402)
T PRK09536 106 RSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRL 185 (402)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 000 001000000 11122356678899999999999999999999999999 889999899999999998
Q ss_pred HHhCCCcEEEEecccccH-HHHHch
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
.+. +.++|++||.++. ..+++.
T Consensus 186 ~~~--g~TIIivsHdl~~~~~~adr 208 (402)
T PRK09536 186 VDD--GKTAVAAIHDLDLAARYCDE 208 (402)
T ss_pred Hhc--CCEEEEEECCHHHHHHhCCE
Confidence 753 7899999999864 355543
No 163
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.46 E-value=1.7e-13 Score=135.37 Aligned_cols=145 Identities=21% Similarity=0.316 Sum_probs=101.9
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh------hhcCceEEEEecCcccccccHHHHHHHh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.+..|+.++|+|+|||||||++..+. +++.++... .....+.++++.+......++.+++...
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 103 (243)
T TIGR02315 24 NINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHG 103 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhc
Confidence 35789999999999999999998432 222221110 0123467777777666667888777421
Q ss_pred hh---------------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcC
Q 008221 140 MD---------------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHER 196 (573)
Q Consensus 140 ~~---------------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r 196 (573)
.. ......+|.. ...+..+..+|+|+++|+.++++++.+|+++|||| +++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 177 (243)
T TIGR02315 104 RLGYKPTWRSLLGRFSEEDKERALSALERVGLA------DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177 (243)
T ss_pred ccccccchhhhhccccHHHHHHHHHHHHHcCcH------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 10 0001111111 12345677899999999999999999999999999 7888
Q ss_pred cccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 197 TLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
......+.++++++.+.. +..+|++||.++.
T Consensus 178 ~~~~~~l~~~l~~~~~~~-~~tiii~tH~~~~ 208 (243)
T TIGR02315 178 PKTSKQVMDYLKRINKED-GITVIINLHQVDL 208 (243)
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH
Confidence 888999999999886543 6789999998763
No 164
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=2.3e-13 Score=142.71 Aligned_cols=149 Identities=21% Similarity=0.351 Sum_probs=108.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCChh-------hcCceEEEEecCcccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+..|+.++|+|+|||||||+++.+ .+++.++.... ..+.+.++++++..+...++.+++...
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~ 130 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFG 130 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHH
Confidence 678999999999999999999843 23333322110 123578888888777778888887532
Q ss_pred hhh-------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 140 MDV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 140 ~~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
... .....+|.. ...+..+..+|+|++||+.++++++.++++++||| +++|......+.
T Consensus 131 ~~~~~~~~~~~~~~~~e~L~~~gL~------~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~ 204 (400)
T PRK10070 131 MELAGINAEERREKALDALRQVGLE------NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQ 204 (400)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCC------hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence 110 011122221 22356778899999999999999999999999999 789999999999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++++++.+.. +.++|++||.++. ..+++
T Consensus 205 ~~L~~l~~~~-g~TIIivTHd~~~~~~~~D 233 (400)
T PRK10070 205 DELVKLQAKH-QRTIVFISHDLDEAMRIGD 233 (400)
T ss_pred HHHHHHHHHC-CCeEEEEECCHHHHHHhCC
Confidence 9999886543 7899999999863 34443
No 165
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.46 E-value=2.4e-13 Score=132.40 Aligned_cols=144 Identities=19% Similarity=0.326 Sum_probs=101.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--h-h----hcCceEEEEecCcccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--P-D----RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~-~----~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+..|+.++|+|+|||||||++..+. +++.++.. . . ..+.+.++++.+......++.+++...
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 107 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMP 107 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHH
Confidence 5689999999999999999998432 22222111 0 0 013467788777666567888776431
Q ss_pred hh---h----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 140 MD---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 140 ~~---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
.. . .....+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~ 181 (221)
T TIGR02211 108 LLIGKKSVKEAKERAYEMLEKVGLE------HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF 181 (221)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCh------hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHH
Confidence 10 0 011111111 22345677899999999999999999999999999 788989999999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
++++++.+.. +..+|++||.++.
T Consensus 182 ~~l~~~~~~~-~~tii~~tH~~~~ 204 (221)
T TIGR02211 182 DLMLELNREL-NTSFLVVTHDLEL 204 (221)
T ss_pred HHHHHHHHhc-CCEEEEEeCCHHH
Confidence 9999886543 6799999998753
No 166
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.46 E-value=2.3e-13 Score=138.79 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=105.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhh---h
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM---D 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~ 141 (573)
+..|+.++++|+|||||||++..+. +++.+... ....+.++++++.+......++.+++.... +
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 106 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG 106 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC
Confidence 5789999999999999999998432 22222111 111345778888776666678888774211 1
Q ss_pred hcc---cchh-ceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCC
Q 008221 142 VTI---GEEV-GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (573)
Q Consensus 142 ~~~---~~~v-g~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~ 215 (573)
... ...+ .+...+.-....++.+..+|+|+++|+.++++++.+|++++||| +++|......+.++++++.+.
T Consensus 107 ~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-- 184 (303)
T TIGR01288 107 MSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-- 184 (303)
T ss_pred CCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--
Confidence 000 0000 00001111122356778899999999999999999999999999 889999999999999998653
Q ss_pred CcEEEEecccccH-HHHHc
Q 008221 216 DLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 216 ~~~iil~SATl~~-~~~~~ 233 (573)
+..+|++||.++. ..+++
T Consensus 185 g~til~~sH~~~~~~~~~d 203 (303)
T TIGR01288 185 GKTILLTTHFMEEAERLCD 203 (303)
T ss_pred CCEEEEECCCHHHHHHhCC
Confidence 7899999999863 34554
No 167
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=2.4e-13 Score=134.05 Aligned_cols=155 Identities=22% Similarity=0.224 Sum_probs=104.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhhc--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT-- 143 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~-- 143 (573)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++.......
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 104 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPR 104 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccc
Confidence 5689999999999999999998432 22222111 011234677787776666678888775321100
Q ss_pred --------ccchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHH
Q 008221 144 --------IGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLK 212 (573)
Q Consensus 144 --------~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~ 212 (573)
....+. +...+.-....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.++++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 184 (239)
T cd03296 105 SERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184 (239)
T ss_pred cccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 000000 0000110112345677899999999999999999999999999 78888999999999998876
Q ss_pred hCCCcEEEEecccccH-HHHHc
Q 008221 213 NRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 213 ~~~~~~iil~SATl~~-~~~~~ 233 (573)
.. +..+|++||.++. ..+++
T Consensus 185 ~~-~~tvii~sH~~~~~~~~~d 205 (239)
T cd03296 185 EL-HVTTVFVTHDQEEALEVAD 205 (239)
T ss_pred Hc-CCEEEEEeCCHHHHHHhCC
Confidence 43 6799999998863 34443
No 168
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=3.2e-13 Score=126.22 Aligned_cols=119 Identities=26% Similarity=0.399 Sum_probs=83.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhc-----------CccCCC--hhhcCceEEEEecCcccccccHHHHHHHhhhhcc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLE-----------GVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~-----------~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (573)
+..|+.++|+|+|||||||++..+.-. +..... ....+.+.++++.+......++.+++.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~------- 95 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK------- 95 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-------
Confidence 578999999999999999999854211 111000 000112223333322222223322221
Q ss_pred cchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEe
Q 008221 145 GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (573)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~ 222 (573)
+|+|+++|+.++++++.+++++++|| +++|......+.++++++.+. +..+|++
T Consensus 96 ----------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiii~ 151 (173)
T cd03230 96 ----------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE--GKTILLS 151 (173)
T ss_pred ----------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEE
Confidence 89999999999999999999999999 788889999999999988654 6789999
Q ss_pred ccccc
Q 008221 223 SATLE 227 (573)
Q Consensus 223 SATl~ 227 (573)
||..+
T Consensus 152 th~~~ 156 (173)
T cd03230 152 SHILE 156 (173)
T ss_pred CCCHH
Confidence 99875
No 169
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.45 E-value=2.6e-13 Score=130.58 Aligned_cols=143 Identities=20% Similarity=0.286 Sum_probs=101.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCC---Ch----hhcCceEEEEecCcccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIE---TP----DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~---~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+..|+.++|+|+|||||||++..+. +++..+. .. ...+.+.++++.+......++.+++...
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~ 100 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLG 100 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHH
Confidence 5689999999999999999998432 2222211 00 1123567777777666667887776431
Q ss_pred hh-------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 140 MD-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 140 ~~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
.. ......+|.. ...+..+..+|+|+++|+.++++++.+|+++|||| +++|....+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~ 174 (206)
T TIGR03608 101 LKYKKLSKKEKREKKKEALEKVGLN------LKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVL 174 (206)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCch------hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHH
Confidence 10 0011112211 12355677899999999999999999999999999 788888999999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
++++++.+. +..+|++||.++.
T Consensus 175 ~~l~~~~~~--~~tii~~sh~~~~ 196 (206)
T TIGR03608 175 DLLLELNDE--GKTIIIVTHDPEV 196 (206)
T ss_pred HHHHHHHhc--CCEEEEEeCCHHH
Confidence 999988653 7899999998753
No 170
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.45 E-value=3.1e-13 Score=130.88 Aligned_cols=142 Identities=20% Similarity=0.229 Sum_probs=99.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhh---hc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD---VT 143 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---~~ 143 (573)
+..|+.++|+|+|||||||++..+. +++..+......+.+.++++.+......++.+++..... ..
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~ 113 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRR 113 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCc
Confidence 5789999999999999999998442 222221111112235667766655555677777643211 00
Q ss_pred -------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhC
Q 008221 144 -------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNR 214 (573)
Q Consensus 144 -------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~ 214 (573)
....+|.. ...+..+..+|+|+++++.++++++.++++++||| +++|......+.++++++.+.
T Consensus 114 ~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~- 186 (214)
T PRK13543 114 AKQMPGSALAIVGLA------GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG- 186 (214)
T ss_pred HHHHHHHHHHHcCCh------hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-
Confidence 11111111 12356678899999999999999999999999999 788888889999999888654
Q ss_pred CCcEEEEeccccc
Q 008221 215 PDLKLVVMSATLE 227 (573)
Q Consensus 215 ~~~~iil~SATl~ 227 (573)
+..+|++||.++
T Consensus 187 -~~tiii~sH~~~ 198 (214)
T PRK13543 187 -GGAALVTTHGAY 198 (214)
T ss_pred -CCEEEEEecChh
Confidence 678999999875
No 171
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.45 E-value=3.1e-13 Score=132.24 Aligned_cols=144 Identities=20% Similarity=0.285 Sum_probs=101.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh--h-----hcCceEEEEecCcccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP--D-----RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~--~-----~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+..|++++|+|+|||||||++..+. +++..+... . ....+.++++.+......++.+++...
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~ 112 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELP 112 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHH
Confidence 5689999999999999999998432 233222110 0 013467778777666667888776432
Q ss_pred hhh-------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 140 MDV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 140 ~~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
... .....+|. ....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 186 (228)
T PRK10584 113 ALLRGESSRQSRNGAKALLEQLGL------GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186 (228)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCC------HhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 100 00111111 112345677899999999999999999999999999 788888899999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
++++++.+.. +..+|++||..+.
T Consensus 187 ~~l~~~~~~~-~~tii~~sH~~~~ 209 (228)
T PRK10584 187 DLLFSLNREH-GTTLILVTHDLQL 209 (228)
T ss_pred HHHHHHHHhc-CCEEEEEecCHHH
Confidence 9999886543 6799999998763
No 172
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=2.7e-13 Score=133.13 Aligned_cols=156 Identities=20% Similarity=0.305 Sum_probs=105.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCCh------hhcCceEEEEecCcccccccHHHHHHHh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.+..|+.++|+|+|||||||++..+ .+++.++... ...+.+.++++.+......++.+++...
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~ 106 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP 106 (233)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHH
Confidence 3578999999999999999998833 2333222110 1134577788887766667888877532
Q ss_pred hhh---c---ccchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 140 MDV---T---IGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 140 ~~~---~---~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
... . ....+. +...+.-....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.+.++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 186 (233)
T cd03258 107 LEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDI 186 (233)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHH
Confidence 110 0 000000 0000110112345677899999999999999999999999999 788889999999999988
Q ss_pred HHhCCCcEEEEecccccH-HHHHc
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+.. +..+|++||..+. ..+++
T Consensus 187 ~~~~-~~tvii~sH~~~~~~~~~d 209 (233)
T cd03258 187 NREL-GLTIVLITHEMEVVKRICD 209 (233)
T ss_pred HHHc-CCEEEEEeCCHHHHHHhCC
Confidence 6643 6799999998753 34443
No 173
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.45 E-value=2.7e-13 Score=140.93 Aligned_cols=149 Identities=20% Similarity=0.277 Sum_probs=107.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-------hhhcCceEEEEecCcccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+..|+.++|+|||||||||++..+. +++..+.. ....+.+.++++.+.....+++.+++...
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 100 (352)
T PRK11144 21 LPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYG 100 (352)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhh
Confidence 5689999999999999999998432 23322111 01134567788887777778888887532
Q ss_pred hh-------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 140 MD-------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 140 ~~-------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.. ......+|.. ...+..+..+|+|+++|+.++++++.++++++||| +++|......+.+.++++
T Consensus 101 ~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l 174 (352)
T PRK11144 101 MAKSMVAQFDKIVALLGIE------PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERL 174 (352)
T ss_pred hhhhhHHHHHHHHHHcCCc------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 11 1112222321 22356778899999999999999999999999999 788888899999999998
Q ss_pred HHhCCCcEEEEeccccc-HHHHHc
Q 008221 211 LKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
.+.. +..+|++||.++ ...+++
T Consensus 175 ~~~~-g~tii~vTHd~~~~~~~~d 197 (352)
T PRK11144 175 AREI-NIPILYVSHSLDEILRLAD 197 (352)
T ss_pred HHhc-CCeEEEEecCHHHHHHhCC
Confidence 7653 689999999985 344554
No 174
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.44 E-value=2.8e-13 Score=130.95 Aligned_cols=142 Identities=24% Similarity=0.351 Sum_probs=99.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCc-ccccccHHHHHHHhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~- 141 (573)
+..|++++|+|+|||||||++..+. +++..+.. ....+.+.++++.+. .....++.+++.....
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~ 103 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLEN 103 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHH
Confidence 5689999999999999999998432 22222111 011234667777763 2445677777643210
Q ss_pred --h----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 142 --V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 142 --~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
. .....+|. ....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 177 (211)
T cd03225 104 LGLPEEEIEERVEEALELVGL------EGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELL 177 (211)
T ss_pred cCCCHHHHHHHHHHHHHHcCc------HhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 0 01111111 112345677899999999999999999999999999 788989999999999
Q ss_pred HHHHHhCCCcEEEEeccccc
Q 008221 208 KEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~ 227 (573)
+++.+. +..+|++||.++
T Consensus 178 ~~~~~~--~~tvi~~sH~~~ 195 (211)
T cd03225 178 KKLKAE--GKTIIIVTHDLD 195 (211)
T ss_pred HHHHHc--CCEEEEEeCCHH
Confidence 988654 689999999875
No 175
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=2.5e-13 Score=131.15 Aligned_cols=153 Identities=16% Similarity=0.282 Sum_probs=102.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhc---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT--- 143 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~--- 143 (573)
+..|+.++|+|+|||||||++..+. +++..+. ......+.++++.+......++.+++.......
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 101 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD-IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK 101 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchh-HHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCC
Confidence 5789999999999999999988443 2221111 011235677777776666678887764321100
Q ss_pred ---ccchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCc
Q 008221 144 ---IGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDL 217 (573)
Q Consensus 144 ---~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~ 217 (573)
....+. +...+.-....+..+..+|+|+++|+.++++++.+++++++|| +++|......+..+++++.+. +.
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~--~~ 179 (210)
T cd03269 102 KEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA--GK 179 (210)
T ss_pred hHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CC
Confidence 000000 0000000112245677899999999999999999999999999 788888899999999987653 67
Q ss_pred EEEEecccccH-HHHHc
Q 008221 218 KLVVMSATLEA-EKFQG 233 (573)
Q Consensus 218 ~iil~SATl~~-~~~~~ 233 (573)
.+|+.||..+. ..+++
T Consensus 180 tii~~sH~~~~~~~~~d 196 (210)
T cd03269 180 TVILSTHQMELVEELCD 196 (210)
T ss_pred EEEEECCCHHHHHHhhh
Confidence 99999998753 34443
No 176
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=2.9e-13 Score=131.64 Aligned_cols=156 Identities=18% Similarity=0.251 Sum_probs=104.3
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhhh--
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (573)
.+..|+.++|+|+|||||||++..+. +++..... ....+.+.++++.+......++.+++.....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 101 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY 101 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc
Confidence 35689999999999999999998432 22211111 0112346677777766666788777743211
Q ss_pred -hc---ccchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhC
Q 008221 142 -VT---IGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNR 214 (573)
Q Consensus 142 -~~---~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~ 214 (573)
.. ....+. +...+.-....+..+..+|+|+++|+.++++++.+++++++|| +++|......+.++++++.+..
T Consensus 102 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 181 (220)
T cd03265 102 GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF 181 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhc
Confidence 00 000000 0001111112356678899999999999999999999999999 7888888999999999886643
Q ss_pred CCcEEEEecccccH-HHHHc
Q 008221 215 PDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 215 ~~~~iil~SATl~~-~~~~~ 233 (573)
+..+|++||.++. ..+++
T Consensus 182 -~~tvi~~tH~~~~~~~~~d 200 (220)
T cd03265 182 -GMTILLTTHYMEEAEQLCD 200 (220)
T ss_pred -CCEEEEEeCCHHHHHHhCC
Confidence 6789999998753 34444
No 177
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.44 E-value=2.9e-13 Score=131.00 Aligned_cols=143 Identities=18% Similarity=0.265 Sum_probs=100.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|+.++|+|+|||||||++..+. +++.++.. ......+.++++.+......++.+++......
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 102 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV 102 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCC
Confidence 5689999999999999999998432 22222111 01123466777776655567887776432110
Q ss_pred ----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.....+|. ....+..+..+|+|+++|+.++++++.++++++||| +++|......+.++++++
T Consensus 103 ~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 176 (213)
T cd03301 103 PKDEIDERVREVAELLQI------EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRL 176 (213)
T ss_pred CHHHHHHHHHHHHHHcCC------HHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 00111111 122356677899999999999999999999999999 788889999999999998
Q ss_pred HHhCCCcEEEEeccccc
Q 008221 211 LKNRPDLKLVVMSATLE 227 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~ 227 (573)
.+.. +.++|++||.++
T Consensus 177 ~~~~-~~tvi~~sH~~~ 192 (213)
T cd03301 177 QQRL-GTTTIYVTHDQV 192 (213)
T ss_pred HHHc-CCEEEEEeCCHH
Confidence 7643 679999999875
No 178
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.44 E-value=2.3e-13 Score=132.16 Aligned_cols=148 Identities=18% Similarity=0.307 Sum_probs=104.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++.+......++.+++......
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 107 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG 107 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC
Confidence 5689999999999999999998432 22222111 11123567788887666667888877432110
Q ss_pred -----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 143 -----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 143 -----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
.....+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......+.+++++
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 181 (218)
T cd03266 108 LKGDELTARLEELADRLGME------ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQ 181 (218)
T ss_pred CCHHHHHHHHHHHHHHcCCH------HHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 011112211 12345677899999999999999999999999999 88899999999999998
Q ss_pred HHHhCCCcEEEEecccccH-HHHHc
Q 008221 210 VLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+.+. +..+|++||..+. ..+++
T Consensus 182 ~~~~--~~tii~~tH~~~~~~~~~d 204 (218)
T cd03266 182 LRAL--GKCILFSTHIMQEVERLCD 204 (218)
T ss_pred HHHC--CCEEEEEeCCHHHHHHhcC
Confidence 8543 7899999998752 34443
No 179
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.44 E-value=1.4e-13 Score=133.93 Aligned_cols=145 Identities=21% Similarity=0.306 Sum_probs=111.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCCh-------hhcCceEEEEecCcccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIETP-------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~~-------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+.+|++.+|.|-+||||||+++ .+++++.++... -++..+.+++++--.++..+|.++++..
T Consensus 51 v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fG 130 (386)
T COG4175 51 VEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFG 130 (386)
T ss_pred ecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcc
Confidence 6899999999999999999988 345565554321 1234566777777777888888887532
Q ss_pred -------------hhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 140 -------------MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 140 -------------~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
+.......||+. ...+.++..+|+||.||+-+++++..+++++++|| ..+|++-...+.
T Consensus 131 Lev~Gv~~~er~~~a~~~l~~VgL~------~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQ 204 (386)
T COG4175 131 LEVQGVPKAEREERALEALELVGLE------GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQ 204 (386)
T ss_pred eeecCCCHHHHHHHHHHHHHHcCch------hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHH
Confidence 223334555644 34567888999999999999999999999999999 457888888888
Q ss_pred HHHHHHHHhCCCcEEEEecccccHH
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~~ 229 (573)
+.|.++.+.. +.++|++||+++..
T Consensus 205 deLl~Lq~~l-~KTIvFitHDLdEA 228 (386)
T COG4175 205 DELLELQAKL-KKTIVFITHDLDEA 228 (386)
T ss_pred HHHHHHHHHh-CCeEEEEecCHHHH
Confidence 8887777665 78999999999754
No 180
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.44 E-value=2.9e-13 Score=131.07 Aligned_cols=142 Identities=26% Similarity=0.345 Sum_probs=101.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh------hhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++....
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~ 103 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFAL 103 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHH
Confidence 4689999999999999999988432 222222110 11235677888776666678888775321
Q ss_pred hh-------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 141 DV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 141 ~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
.. .....+|.. ...+..+..+|+|+++|+.++++++.++++++||| +++|....+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~ 177 (214)
T cd03292 104 EVTGVPPREIRKRVPAALELVGLS------HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN 177 (214)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCH------HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 10 001111111 12345677899999999999999999999999999 8889899999999
Q ss_pred HHHHHHHhCCCcEEEEeccccc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~ 227 (573)
.++++.+. +..+|++||..+
T Consensus 178 ~l~~~~~~--~~tiiivtH~~~ 197 (214)
T cd03292 178 LLKKINKA--GTTVVVATHAKE 197 (214)
T ss_pred HHHHHHHc--CCEEEEEeCCHH
Confidence 99987543 689999999875
No 181
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=2.7e-13 Score=136.67 Aligned_cols=145 Identities=21% Similarity=0.303 Sum_probs=103.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCc-ccccccHHHHHHHhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~- 141 (573)
|..|+.++|+|+|||||||++..+ .+++.++.. ....+.+.+++++|. .+...++.+++.....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~ 109 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLEN 109 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHh
Confidence 568999999999999999999843 233333211 112245678888773 4555688887753211
Q ss_pred ------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 142 ------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 142 ------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
......+|.. ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......+++++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 183 (279)
T PRK13650 110 KGIPHEEMKERVNEALELVGMQ------DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTI 183 (279)
T ss_pred CCCCHHHHHHHHHHHHHHCCCH------hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0011112211 22356677899999999999999999999999999 788888899999999
Q ss_pred HHHHHhCCCcEEEEecccccHH
Q 008221 208 KEVLKNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~~~ 229 (573)
+++.+.. +.++|++||.++.-
T Consensus 184 ~~l~~~~-g~tilivtH~~~~~ 204 (279)
T PRK13650 184 KGIRDDY-QMTVISITHDLDEV 204 (279)
T ss_pred HHHHHhc-CCEEEEEecCHHHH
Confidence 9987643 78999999998643
No 182
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.44 E-value=3.9e-13 Score=139.61 Aligned_cols=150 Identities=19% Similarity=0.282 Sum_probs=109.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh-------------cCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL-------------EGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll-------------~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
+..|+.++++|||||||||++..+.- ++..+.. ....+.++++++.+.....+++.++++.....
T Consensus 28 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~ 107 (362)
T TIGR03258 28 IEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ 107 (362)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc
Confidence 56899999999999999999985431 1111111 11234678888888878888999998643211
Q ss_pred ------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 143 ------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 143 ------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
.+...+|.. ...+..+..+|+|++||+.++++++.+|++++||| +.+|......+...++
T Consensus 108 ~~~~~~~~~~v~~~l~~~gL~------~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~ 181 (362)
T TIGR03258 108 KMPKADIAERVADALKLVGLG------DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIA 181 (362)
T ss_pred CCCHHHHHHHHHHHHHhcCCC------chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 011112211 23466788999999999999999999999999999 7888889999999999
Q ss_pred HHHHhCCCcEEEEecccccH-HHHHc
Q 008221 209 EVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++.+...+.++|++||.++. ..+++
T Consensus 182 ~l~~~~~g~til~vTHd~~ea~~l~d 207 (362)
T TIGR03258 182 ALHEELPELTILCVTHDQDDALTLAD 207 (362)
T ss_pred HHHHhCCCCEEEEEeCCHHHHHHhCC
Confidence 88765336899999999864 44554
No 183
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.44 E-value=3.6e-13 Score=133.86 Aligned_cols=150 Identities=18% Similarity=0.262 Sum_probs=104.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCcc----C--CC---hhhcCceEEEEecCcccccccHHHHHHHhhh------
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVD----I--ET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD------ 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~----~--~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~------ 141 (573)
.+..|+.++|+|+|||||||++..+.-.... + .. ....+.+.++++.+......++.+++.....
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~ 113 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDA 113 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHH
Confidence 3578999999999999999999854311000 0 00 0112346677777765555788887753211
Q ss_pred -hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcE
Q 008221 142 -VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLK 218 (573)
Q Consensus 142 -~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~ 218 (573)
......+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......+.++++++.+.. +..
T Consensus 114 ~~~~l~~~gl~------~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-~~t 186 (257)
T PRK11247 114 ALQALAAVGLA------DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH-GFT 186 (257)
T ss_pred HHHHHHHcCCh------hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc-CCE
Confidence 1111222221 22355677899999999999999999999999999 8889899999999999886543 689
Q ss_pred EEEecccccH-HHHHc
Q 008221 219 LVVMSATLEA-EKFQG 233 (573)
Q Consensus 219 iil~SATl~~-~~~~~ 233 (573)
+|++||.++. ..+++
T Consensus 187 viivsHd~~~~~~~~d 202 (257)
T PRK11247 187 VLLVTHDVSEAVAMAD 202 (257)
T ss_pred EEEEeCCHHHHHHhCC
Confidence 9999998863 34444
No 184
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.44 E-value=4e-13 Score=132.18 Aligned_cols=150 Identities=21% Similarity=0.260 Sum_probs=102.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh---h-hcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---D-RRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~---~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
.+..|+.++|+|+|||||||++..+. +++..+... . ....+.++++.+......++.+++.....
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~ 101 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQ 101 (236)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHh
Confidence 35789999999999999999998432 222221110 1 12346677887776666788887743211
Q ss_pred hc----------------ccchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 142 VT----------------IGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 142 ~~----------------~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
.. ....+. +...+.-....+..+..+|+|+++|+.++++++.+++++|+|| +++|......
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 181 (236)
T cd03219 102 ARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEE 181 (236)
T ss_pred hccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 00 000000 0000111122356677899999999999999999999999999 7888888899
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccH
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+..+++++.+. +..+|++||.++.
T Consensus 182 l~~~l~~~~~~--~~tii~vsH~~~~ 205 (236)
T cd03219 182 LAELIRELRER--GITVLLVEHDMDV 205 (236)
T ss_pred HHHHHHHHHHC--CCEEEEEecCHHH
Confidence 99999988653 7899999998753
No 185
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.44 E-value=3.2e-13 Score=130.73 Aligned_cols=154 Identities=18% Similarity=0.278 Sum_probs=103.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-----hhhcCceEEEEecCcccccccHHHHHHHhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-----PDRRRKMMIACTQPRRVAAMSVSRRVAEEM- 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~- 140 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++.+......++.+++....
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~ 102 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPI 102 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHH
Confidence 5689999999999999999988432 23322210 011245677888776666678887774321
Q ss_pred ---hh---cccchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHH
Q 008221 141 ---DV---TIGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (573)
Q Consensus 141 ---~~---~~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~ 211 (573)
+. .....+. ....+.-....+..+..+|+|+++++.++++++.+++++|||| +++|......+.++++++.
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 182 (213)
T cd03262 103 KVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA 182 (213)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 10 0000000 0000111112356678899999999999999999999999999 7888888899999999886
Q ss_pred HhCCCcEEEEecccccH-HHHHc
Q 008221 212 KNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 212 ~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+. +..+|++||.++. ..+++
T Consensus 183 ~~--~~tvi~~sh~~~~~~~~~d 203 (213)
T cd03262 183 EE--GMTMVVVTHEMGFAREVAD 203 (213)
T ss_pred Hc--CCEEEEEeCCHHHHHHhCC
Confidence 53 6789999998753 33443
No 186
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=4.1e-13 Score=134.65 Aligned_cols=149 Identities=20% Similarity=0.297 Sum_probs=104.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh---h----hcCceEEEEecCcccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---D----RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~---~----~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+..|++++|+|+|||||||++..+. +++..+... . ....+.++++.+......++.+++...
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 126 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFG 126 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHH
Confidence 6789999999999999999988432 223222110 0 123467778777666667888877532
Q ss_pred hhh-------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 140 MDV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 140 ~~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
... .....+|. ....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~ 200 (269)
T cd03294 127 LEVQGVPRAEREERAAEALELVGL------EGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQ 200 (269)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCC------HhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 110 01111121 122356677899999999999999999999999999 888989999999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++++++.+.. +.++|++||.++. ..+++
T Consensus 201 ~~l~~~~~~~-g~tiii~tH~~~~~~~~~d 229 (269)
T cd03294 201 DELLRLQAEL-QKTIVFITHDLDEALRLGD 229 (269)
T ss_pred HHHHHHHHhc-CCEEEEEeCCHHHHHHhcC
Confidence 9999886543 6799999998853 34444
No 187
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.43 E-value=3.6e-13 Score=129.83 Aligned_cols=148 Identities=19% Similarity=0.269 Sum_probs=103.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++.+......++.+++......
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 102 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI 102 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC
Confidence 5689999999999999999998442 22222111 11123466777777666677888877432110
Q ss_pred ------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhC
Q 008221 143 ------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNR 214 (573)
Q Consensus 143 ------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~ 214 (573)
.....+|.. ...+..+..+|+|+++|+.++++++.++++++||| +++|......+..+++++.+.
T Consensus 103 ~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~- 175 (208)
T cd03268 103 RKKRIDEVLDVVGLK------DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ- 175 (208)
T ss_pred cHHHHHHHHHHcCCH------HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 001111111 12345677899999999999999999999999999 788888899999999988653
Q ss_pred CCcEEEEecccccH-HHHHc
Q 008221 215 PDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 215 ~~~~iil~SATl~~-~~~~~ 233 (573)
+..+|++||.++. ..+++
T Consensus 176 -~~tii~~tH~~~~~~~~~d 194 (208)
T cd03268 176 -GITVLISSHLLSEIQKVAD 194 (208)
T ss_pred -CCEEEEEcCCHHHHHHhcC
Confidence 6899999998763 34443
No 188
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.43 E-value=3.7e-13 Score=125.81 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=54.3
Q ss_pred cCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 167 LTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 167 lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+|+|+++|+.++++++.++++++||| +++|......+.++++++.+. +..+|++||.++.
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sh~~~~ 158 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAA--GATRIVIAHRPET 158 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHH
Confidence 89999999999999999999999999 788889999999999988643 7899999998753
No 189
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.43 E-value=4.3e-13 Score=131.96 Aligned_cols=144 Identities=17% Similarity=0.320 Sum_probs=101.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++.+......++.+++......
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 103 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHG 103 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcC
Confidence 5689999999999999999998432 22222111 01113466777776655667777776432110
Q ss_pred -----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 143 -----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 143 -----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
.....+|.. ...++.+..+|+|+++|+.++++++.++++++||| +++|....+.+.+.+++
T Consensus 104 ~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 177 (236)
T TIGR03864 104 LSRAEARERIAALLARLGLA------ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRA 177 (236)
T ss_pred CCHHHHHHHHHHHHHHcCCh------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 011111211 12356677899999999999999999999999999 78888999999999998
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
+.+.. +..+|++||.++.
T Consensus 178 ~~~~~-~~tiii~sH~~~~ 195 (236)
T TIGR03864 178 LCRDQ-GLSVLWATHLVDE 195 (236)
T ss_pred HHHhC-CCEEEEEecChhh
Confidence 86543 6799999998864
No 190
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.43 E-value=3.2e-13 Score=130.70 Aligned_cols=153 Identities=19% Similarity=0.279 Sum_probs=101.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChhhcCceEEEEecCccc--ccccHHHHHHHhhhhc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRV--AAMSVSRRVAEEMDVT 143 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~--~~~~v~~~v~~~~~~~ 143 (573)
.+..|+.++|+|+|||||||++..+. +++..+. ...+.+.++++++... ...++.+++.......
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~ 98 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGH 98 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhccccc
Confidence 35789999999999999999998432 1111100 1123466777766432 2257777765321100
Q ss_pred ----------ccchhceee-eecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 144 ----------IGEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 144 ----------~~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
....+.... .+.-....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.+.++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 178 (213)
T cd03235 99 KGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178 (213)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 000000000 0000112345677899999999999999999999999999 889999999999999988
Q ss_pred HHhCCCcEEEEecccccH-HHHHc
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+. +..+|++||.++. ..+++
T Consensus 179 ~~~--~~tvi~~sH~~~~~~~~~d 200 (213)
T cd03235 179 RRE--GMTILVVTHDLGLVLEYFD 200 (213)
T ss_pred Hhc--CCEEEEEeCCHHHHHHhcC
Confidence 653 7899999998853 34444
No 191
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.43 E-value=4.9e-13 Score=129.38 Aligned_cols=150 Identities=16% Similarity=0.271 Sum_probs=103.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhhcc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (573)
.+..|+.++|.|+|||||||++..+. +++.++.. ....+.+.++++.+..+...++.+++........
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~ 99 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL 99 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC
Confidence 35689999999999999999998432 33322211 1122456788888776666788888753211000
Q ss_pred ------cchhceee-eecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCC
Q 008221 145 ------GEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (573)
Q Consensus 145 ------~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~ 215 (573)
...+.... .+.-....+..+..+|+|+++|+.++++++.+++++++|| +++|......+.++++++.+..
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~- 178 (213)
T TIGR01277 100 KLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSER- 178 (213)
T ss_pred CccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-
Confidence 00010000 0000122356677899999999999999999999999999 7888888999999999887543
Q ss_pred CcEEEEeccccc
Q 008221 216 DLKLVVMSATLE 227 (573)
Q Consensus 216 ~~~iil~SATl~ 227 (573)
+.++|++||..+
T Consensus 179 ~~tii~vsh~~~ 190 (213)
T TIGR01277 179 QRTLLMVTHHLS 190 (213)
T ss_pred CCEEEEEeCCHH
Confidence 689999999875
No 192
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=1.9e-12 Score=143.71 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCC
Q 008221 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (573)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (573)
+..++++.+...|. ...++|||+.+....+.++..|... ++....||+.+++.++..+.+.+++|
T Consensus 434 K~~Aii~ei~~~~~--~GrpVLV~t~sv~~se~ls~~L~~~---------gi~~~vLnak~~~~Ea~ii~~Ag~~G---- 498 (908)
T PRK13107 434 KYQAIIKDIKDCRE--RGQPVLVGTVSIEQSELLARLMVKE---------KIPHEVLNAKFHEREAEIVAQAGRTG---- 498 (908)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeEeccCcccHHHHHHHHhCCCCC----
Confidence 44555666666664 3568999999999999999999875 78889999999999999999999887
Q ss_pred CCCCceEEEeecccccccccCC-------------------------------------eEEEEcCCcccceeecccCCc
Q 008221 342 GPPGRKIVVSTNIAETSLTIDG-------------------------------------IVYVIDPGFAKQKVYNPRVRV 384 (573)
Q Consensus 342 ~~~~~kvllaT~iae~gitI~~-------------------------------------V~~VId~g~~k~~~~d~~~~~ 384 (573)
+|+||||+|+||+||.= =-|||=+..
T Consensus 499 -----~VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTer------------ 561 (908)
T PRK13107 499 -----AVTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTER------------ 561 (908)
T ss_pred -----cEEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEeccc------------
Confidence 39999999999999871 125554444
Q ss_pred ccceeeeccHhhHHHhccccCCC-CCCeEEeccchhh
Q 008221 385 ESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (573)
Q Consensus 385 ~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (573)
+-|.--=.|=.|||||. -||.+-.+.+-++
T Consensus 562 ------heSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 562 ------HESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred ------CchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 55665566889999999 7998877777554
No 193
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=4.3e-13 Score=125.98 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=54.5
Q ss_pred cCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 167 LTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 167 lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+|+|+++|+.++++++.+++++|+|| +++|......+.++++++.+.. +..++++||..+.
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~ 163 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQL-GITVVLVTHDLDE 163 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH
Confidence 99999999999999999999999999 8888899999999999886642 5799999998753
No 194
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.42 E-value=4.8e-13 Score=139.23 Aligned_cols=149 Identities=22% Similarity=0.293 Sum_probs=106.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-------hhhcCceEEEEecCcccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+..|++++|+|+|||||||++..+ .+++.++.. ....+.+.++++.+.....+++.+++...
T Consensus 20 i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 99 (354)
T TIGR02142 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYG 99 (354)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHH
Confidence 568999999999999999999843 233322211 01124567888887766778888887542
Q ss_pred hhh-----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHH
Q 008221 140 MDV-----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (573)
Q Consensus 140 ~~~-----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~ 206 (573)
... .....+|. ....+..+..+|+|+++|+.++++++.+|++++||| +++|......+.++
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~gL------~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 173 (354)
T TIGR02142 100 MKRARPSERRISFERVIELLGI------GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPY 173 (354)
T ss_pred hhccChhHHHHHHHHHHHHcCC------hhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 110 01111121 122356677899999999999999999999999999 78888999999999
Q ss_pred HHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 207 LKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 207 l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++++.+.. +..+|++||.++. ..+++
T Consensus 174 L~~l~~~~-g~tiiivtH~~~~~~~~~d 200 (354)
T TIGR02142 174 LERLHAEF-GIPILYVSHSLQEVLRLAD 200 (354)
T ss_pred HHHHHHhc-CCEEEEEecCHHHHHHhCC
Confidence 99987653 6789999998863 34444
No 195
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.42 E-value=3.3e-13 Score=137.51 Aligned_cols=155 Identities=15% Similarity=0.183 Sum_probs=107.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhh---h
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM---D 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~ 141 (573)
+..|+++++.|||||||||++..+. +++..... ....+.++++++.+.....+++.+++.... +
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~ 104 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG 104 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 5789999999999999999998432 22222211 112345778888877667778888875321 1
Q ss_pred hcc---cchhceee-eecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCC
Q 008221 142 VTI---GEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (573)
Q Consensus 142 ~~~---~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~ 215 (573)
... ...+.... .++-....++.+..+|+|+++|+.++++++.+|+++|||| +++|......+...++++. .
T Consensus 105 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-- 181 (301)
T TIGR03522 105 MKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-- 181 (301)
T ss_pred CCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C--
Confidence 000 00111000 0111122356778899999999999999999999999999 7889999999999999873 2
Q ss_pred CcEEEEeccccc-HHHHHchh
Q 008221 216 DLKLVVMSATLE-AEKFQGYF 235 (573)
Q Consensus 216 ~~~iil~SATl~-~~~~~~~~ 235 (573)
+.++|+.||.++ .+.+++..
T Consensus 182 ~~tiii~sH~l~~~~~~~d~i 202 (301)
T TIGR03522 182 DKTIILSTHIMQEVEAICDRV 202 (301)
T ss_pred CCEEEEEcCCHHHHHHhCCEE
Confidence 589999999986 56676643
No 196
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.42 E-value=6.3e-13 Score=133.35 Aligned_cols=150 Identities=22% Similarity=0.301 Sum_probs=104.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--h----hhcCceEEEEecCcccccccHHHHHHHh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--P----DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.+..|+.++|+|+|||||||++..+. +++..+.. . ...+.+.++++.+......++.+++...
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 108 (269)
T PRK11831 29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYP 108 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHH
Confidence 35689999999999999999998432 22222211 0 0123467778777666667888877532
Q ss_pred hhh----c----------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHH
Q 008221 140 MDV----T----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (573)
Q Consensus 140 ~~~----~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~l 203 (573)
... . ....+|. ....+..+..+|+|+++|+.++++++.+++++|||| +++|......+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~gl------~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 182 (269)
T PRK11831 109 LREHTQLPAPLLHSTVMMKLEAVGL------RGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVL 182 (269)
T ss_pred HHHccCCCHHHHHHHHHHHHHHcCC------hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 110 0 0111121 122355677899999999999999999999999999 88888999999
Q ss_pred HHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 204 FGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 204 l~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.++++++.+.. +..+|++||.++. ..+++
T Consensus 183 ~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d 212 (269)
T PRK11831 183 VKLISELNSAL-GVTCVVVSHDVPEVLSIAD 212 (269)
T ss_pred HHHHHHHHHhc-CcEEEEEecCHHHHHHhhC
Confidence 99999886643 6899999998753 34444
No 197
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=5.6e-13 Score=132.54 Aligned_cols=147 Identities=18% Similarity=0.302 Sum_probs=102.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhh---h-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD---V- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---~- 142 (573)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.++++.+......++.+++..... .
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 101 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE 101 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCC
Confidence 5689999999999999999998443 22221111 11235677777665555788877753211 0
Q ss_pred ---------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHH
Q 008221 143 ---------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (573)
Q Consensus 143 ---------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~ 211 (573)
.....+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......+.++++++.
T Consensus 102 ~~~~~~~~~~~l~~~gl~------~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 175 (255)
T PRK11248 102 KMQRLEIAHQMLKKVGLE------GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLW 175 (255)
T ss_pred HHHHHHHHHHHHHHcCCh------hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 011111111 12245677899999999999999999999999999 7888899999999999886
Q ss_pred HhCCCcEEEEecccccH-HHHHc
Q 008221 212 KNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 212 ~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+.. +..+|++||.++. ..+++
T Consensus 176 ~~~-g~tviivsH~~~~~~~~~d 197 (255)
T PRK11248 176 QET-GKQVLLITHDIEEAVFMAT 197 (255)
T ss_pred Hhc-CCEEEEEeCCHHHHHHhCC
Confidence 543 6899999998863 34443
No 198
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.42 E-value=5.1e-13 Score=131.06 Aligned_cols=154 Identities=18% Similarity=0.274 Sum_probs=103.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--h-h-hcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--P-D-RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~-~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
+..|+.++|+|+|||||||++..+. +++..... . . ....+.++++.+......++.+++......
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 102 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEI 102 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHh
Confidence 5689999999999999999998432 22222111 0 1 123466777777666667888777532110
Q ss_pred c-c-----cchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHh
Q 008221 143 T-I-----GEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (573)
Q Consensus 143 ~-~-----~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~ 213 (573)
. . ...+. +...+.-....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.++++++.+.
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 182 (232)
T cd03218 103 RGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR 182 (232)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 0 0 00010 0000111122356677899999999999999999999999999 788889999999999988653
Q ss_pred CCCcEEEEeccccc-HHHHHc
Q 008221 214 RPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 214 ~~~~~iil~SATl~-~~~~~~ 233 (573)
+..+|++||.++ ...+++
T Consensus 183 --~~tii~~sH~~~~~~~~~d 201 (232)
T cd03218 183 --GIGVLITDHNVRETLSITD 201 (232)
T ss_pred --CCEEEEEeCCHHHHHHhCC
Confidence 678999999875 344444
No 199
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=6.1e-13 Score=130.51 Aligned_cols=155 Identities=19% Similarity=0.331 Sum_probs=105.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhhcc-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI- 144 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~- 144 (573)
+..|+.++|+|+|||||||++..+. +++.++.. ......+.++++++......++.+++........
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 101 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLK 101 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccC
Confidence 5689999999999999999998432 22222111 0112356778888776666788887753211000
Q ss_pred -c----chhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCC
Q 008221 145 -G----EEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPD 216 (573)
Q Consensus 145 -~----~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~ 216 (573)
. ..+. +...+.-....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.++++++.+.. +
T Consensus 102 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~-~ 180 (232)
T PRK10771 102 LNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER-Q 180 (232)
T ss_pred CCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-C
Confidence 0 0000 0000111122356677899999999999999999999999999 7888888889999999886643 6
Q ss_pred cEEEEecccccH-HHHHc
Q 008221 217 LKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 217 ~~iil~SATl~~-~~~~~ 233 (573)
.++|++||.++. ..+++
T Consensus 181 ~tiii~sH~~~~~~~~~d 198 (232)
T PRK10771 181 LTLLMVSHSLEDAARIAP 198 (232)
T ss_pred CEEEEEECCHHHHHHhCC
Confidence 799999998863 44444
No 200
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.42 E-value=6e-13 Score=136.85 Aligned_cols=150 Identities=19% Similarity=0.274 Sum_probs=107.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCCh------hhcCceEEEEecCc--ccccccHHHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP------DRRRKMMIACTQPR--RVAAMSVSRRVAE 138 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~------~~~~~~~i~~t~p~--~~~~~~v~~~v~~ 138 (573)
|..|+.++|+|+|||||||++..+ .+++.++... ...+.+.++++.|. ....+++.+++..
T Consensus 44 i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~ 123 (331)
T PRK15079 44 LYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAE 123 (331)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHH
Confidence 678999999999999999998833 3344333211 11345788888873 3446788887754
Q ss_pred hhh-----h----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 139 EMD-----V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 139 ~~~-----~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
... . .....+|.. ....+..+..+|+|++||+.++++++.++++||+|| +.+|.....
T Consensus 124 ~l~~~~~~~~~~~~~~~~~~~l~~vgl~-----~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~ 198 (331)
T PRK15079 124 PLRTYHPKLSRQEVKDRVKAMMLKVGLL-----PNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQA 198 (331)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHcCCC-----hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 211 0 011122221 012356778899999999999999999999999999 788888899
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.++++++++.+.. +.++|++||.++. ..+++
T Consensus 199 ~i~~lL~~l~~~~-~~til~iTHdl~~~~~~~d 230 (331)
T PRK15079 199 QVVNLLQQLQREM-GLSLIFIAHDLAVVKHISD 230 (331)
T ss_pred HHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCC
Confidence 9999999987653 7899999999864 34554
No 201
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.42 E-value=4.2e-13 Score=128.94 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=99.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
.+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++++......++.+++......
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~ 102 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH 102 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc
Confidence 36789999999999999999998432 22222111 11123455666666555557888777432211
Q ss_pred ---------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHH
Q 008221 143 ---------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (573)
Q Consensus 143 ---------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~ 211 (573)
.....+|.. ...+..+..+|+|+++|+.++++++.+|+++|+|| +++|......+.++++++.
T Consensus 103 ~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 176 (204)
T PRK13538 103 GPGDDEALWEALAQVGLA------GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA 176 (204)
T ss_pred CccHHHHHHHHHHHcCCH------HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 011112211 12355677899999999999999999999999999 7888888999999999875
Q ss_pred HhCCCcEEEEeccccc
Q 008221 212 KNRPDLKLVVMSATLE 227 (573)
Q Consensus 212 ~~~~~~~iil~SATl~ 227 (573)
+. +.++|++||..+
T Consensus 177 ~~--~~tiii~sh~~~ 190 (204)
T PRK13538 177 EQ--GGMVILTTHQDL 190 (204)
T ss_pred HC--CCEEEEEecChh
Confidence 43 679999999864
No 202
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.42 E-value=7.1e-13 Score=126.95 Aligned_cols=149 Identities=16% Similarity=0.161 Sum_probs=99.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhhhhcc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++.+......++.+++........
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~ 103 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSP 103 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCc
Confidence 5689999999999999999998432 22222211 1112345666665555456788877754211000
Q ss_pred c-chhceeee-ecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEE
Q 008221 145 G-EEVGYSIR-FEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLV 220 (573)
Q Consensus 145 ~-~~vg~~~~-~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~ii 220 (573)
. ..+..... +.-....+..+..+|+|+++|+.++++++.+|+++|+|| +++|....+.+.+.++++.+. +.++|
T Consensus 104 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~--~~tii 181 (200)
T PRK13540 104 GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAK--GGAVL 181 (200)
T ss_pred chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHc--CCEEE
Confidence 0 00000000 000012245567899999999999999999999999999 788888889999999987543 78999
Q ss_pred EecccccH
Q 008221 221 VMSATLEA 228 (573)
Q Consensus 221 l~SATl~~ 228 (573)
++||....
T Consensus 182 i~sh~~~~ 189 (200)
T PRK13540 182 LTSHQDLP 189 (200)
T ss_pred EEeCCchh
Confidence 99998753
No 203
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.42 E-value=5.8e-13 Score=130.43 Aligned_cols=153 Identities=22% Similarity=0.297 Sum_probs=102.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhh-----
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD----- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~----- 141 (573)
+..|+.++|+|+|||||||++..+. +++..+... .....++++.+......++.+++.....
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~ 85 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP--GPDRMVVFQNYSLLPWLTVRENIALAVDRVLPD 85 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC--ChhheEEecCcccCCCCCHHHHHHHHHHhcccC
Confidence 5689999999999999999998432 222221110 0123567777765566788887643210
Q ss_pred hc---ccchhceee-eecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCC
Q 008221 142 VT---IGEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (573)
Q Consensus 142 ~~---~~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~ 215 (573)
.. ....+.... .+.-....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.++++++.+..
T Consensus 86 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~- 164 (230)
T TIGR01184 86 LSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH- 164 (230)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-
Confidence 00 000010000 0010112345677899999999999999999999999999 7899999999999999886643
Q ss_pred CcEEEEecccccH-HHHHc
Q 008221 216 DLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 216 ~~~iil~SATl~~-~~~~~ 233 (573)
+..+|++||.++. ..+++
T Consensus 165 ~~tii~~sH~~~~~~~~~d 183 (230)
T TIGR01184 165 RVTVLMVTHDVDEALLLSD 183 (230)
T ss_pred CCEEEEEeCCHHHHHHhcC
Confidence 6799999999863 44554
No 204
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=5.4e-13 Score=134.13 Aligned_cols=149 Identities=20% Similarity=0.214 Sum_probs=105.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCc-ccccccHHHHHHHhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEMD 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~ 141 (573)
.+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++.|. .+...++.+++.....
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~ 106 (274)
T PRK13647 27 SIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPV 106 (274)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHH
Confidence 35789999999999999999998432 33322211 111235677888763 3445688877753211
Q ss_pred ---h----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHH
Q 008221 142 ---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (573)
Q Consensus 142 ---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~ 206 (573)
. .....+|.. ...+..+..+|+|+++|+.++++++.+|++++||| +++|......++++
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~ 180 (274)
T PRK13647 107 NMGLDKDEVERRVEEALKAVRMW------DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEI 180 (274)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCH------HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 0 011111211 22356678899999999999999999999999999 78899999999999
Q ss_pred HHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 207 LKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 207 l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++++.+. +.++|++||.++. ..+++
T Consensus 181 l~~~~~~--g~tili~tH~~~~~~~~~d 206 (274)
T PRK13647 181 LDRLHNQ--GKTVIVATHDVDLAAEWAD 206 (274)
T ss_pred HHHHHHC--CCEEEEEeCCHHHHHHhCC
Confidence 9998653 7899999999864 34554
No 205
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=6.9e-13 Score=130.98 Aligned_cols=151 Identities=21% Similarity=0.289 Sum_probs=104.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ......+.++++.+......++.+++.....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 103 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL 103 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc
Confidence 5689999999999999999998432 22222111 1112346677777766666788888753211
Q ss_pred -h----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 142 -V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 142 -~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
. .....+|.. .....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.+.++
T Consensus 104 ~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~ 179 (242)
T cd03295 104 KWPKEKIRERADELLALVGLD----PAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179 (242)
T ss_pred CCCHHHHHHHHHHHHHHcCCC----cHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 0 011111211 0002355677899999999999999999999999999 7788888899999999
Q ss_pred HHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 209 EVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
++.+.. +..+|++||..+ ...+++
T Consensus 180 ~~~~~~-g~tvii~sH~~~~~~~~~d 204 (242)
T cd03295 180 RLQQEL-GKTIVFVTHDIDEAFRLAD 204 (242)
T ss_pred HHHHHc-CCEEEEEecCHHHHHHhCC
Confidence 886643 678999999885 344444
No 206
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.41 E-value=6.1e-13 Score=128.12 Aligned_cols=143 Identities=24% Similarity=0.304 Sum_probs=97.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
.|..|+.++|+|+|||||||++..+. +++.............++++++......++.+++......
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~ 103 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGG 103 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCC
Confidence 35689999999999999999988432 2221111000122345555555444556777776431110
Q ss_pred ------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhC
Q 008221 143 ------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNR 214 (573)
Q Consensus 143 ------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~ 214 (573)
.....+|.. ...+..+..+|+|+++|+.++++++.+++++++|| +++|......+.++++++.+.
T Consensus 104 ~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~- 176 (207)
T PRK13539 104 EELDIAAALEAVGLA------PLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ- 176 (207)
T ss_pred cHHHHHHHHHHcCCH------HHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 111112211 12245667899999999999999999999999999 788888899999999987553
Q ss_pred CCcEEEEeccccc
Q 008221 215 PDLKLVVMSATLE 227 (573)
Q Consensus 215 ~~~~iil~SATl~ 227 (573)
+.++|++||..+
T Consensus 177 -~~tiii~sH~~~ 188 (207)
T PRK13539 177 -GGIVIAATHIPL 188 (207)
T ss_pred -CCEEEEEeCCch
Confidence 789999999875
No 207
>PRK10908 cell division protein FtsE; Provisional
Probab=99.41 E-value=6.2e-13 Score=129.57 Aligned_cols=148 Identities=17% Similarity=0.274 Sum_probs=103.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---h---hhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---P---DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
+..|+.++|+|+|||||||++..+. +++.++.. . ...+.+.++++.+......++.+++....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 104 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPL 104 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHH
Confidence 5789999999999999999998432 22222111 0 01235677777776556678887775321
Q ss_pred ---hh----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 141 ---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 141 ---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
+. .....+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......+..
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (222)
T PRK10908 105 IIAGASGDDIRRRVSAALDKVGLL------DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR 178 (222)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCh------hhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 00 011111111 12345677899999999999999999999999999 7888888889999
Q ss_pred HHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++++.+. +..+|++||.++. ..+++
T Consensus 179 ~l~~~~~~--~~tiii~sH~~~~~~~~~d 205 (222)
T PRK10908 179 LFEEFNRV--GVTVLMATHDIGLISRRSY 205 (222)
T ss_pred HHHHHHHC--CCEEEEEeCCHHHHHHhCC
Confidence 99988543 6899999998863 33443
No 208
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=5.8e-13 Score=134.77 Aligned_cols=151 Identities=24% Similarity=0.359 Sum_probs=105.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-----hhhcCceEEEEecCc-ccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-----PDRRRKMMIACTQPR-RVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-----~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~ 140 (573)
+..|+.++|+|+|||||||++..+ .+++..+.. ......+++++++|. .....++.+++....
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 109 (287)
T PRK13637 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGP 109 (287)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHH
Confidence 578999999999999999999843 233333221 012345778888764 233467888775321
Q ss_pred h---h----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 141 D---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 141 ~---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
. . .....+|.. .....++.+..+|+|+++|+.++++++.+|+++|+|| +++|......+++
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~gL~----~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~ 185 (287)
T PRK13637 110 INLGLSEEEIENRVKRAMNIVGLD----YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILN 185 (287)
T ss_pred HHCCCCHHHHHHHHHHHHHHcCCC----chhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH
Confidence 1 0 111122221 0012356778899999999999999999999999999 8899999999999
Q ss_pred HHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++++.+.. +.++|++||.++. ..+++
T Consensus 186 ~l~~l~~~~-g~tvi~vtHd~~~~~~~~d 213 (287)
T PRK13637 186 KIKELHKEY-NMTIILVSHSMEDVAKLAD 213 (287)
T ss_pred HHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 999987643 7899999999863 34444
No 209
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.41 E-value=4.2e-13 Score=130.71 Aligned_cols=155 Identities=16% Similarity=0.240 Sum_probs=104.9
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCCh---h-hcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP---D-RRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~---~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
.+..|+.++|+|+|||||||++..+ .+++..+... . ..+.+.++++.+.....+++.+++.....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 101 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAY 101 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhh
Confidence 3568999999999999999999833 2223222110 0 12346778877766666788877753211
Q ss_pred hc----ccchh-ceeeeecc-cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHh
Q 008221 142 VT----IGEEV-GYSIRFED-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (573)
Q Consensus 142 ~~----~~~~v-g~~~~~~~-~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~ 213 (573)
.. ....+ .....+.. ....++.+..+|+|+++|+.++++++.+++++++|| +++|......++++++++.+.
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 181 (222)
T cd03224 102 ARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181 (222)
T ss_pred hcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHC
Confidence 10 00000 00000100 112356677899999999999999999999999999 889999999999999988653
Q ss_pred CCCcEEEEecccccH-HHHHc
Q 008221 214 RPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 214 ~~~~~iil~SATl~~-~~~~~ 233 (573)
+.++|++||.++. ..+++
T Consensus 182 --~~tiii~sH~~~~~~~~~d 200 (222)
T cd03224 182 --GVTILLVEQNARFALEIAD 200 (222)
T ss_pred --CCEEEEEeCCHHHHHHhcc
Confidence 7899999998763 44443
No 210
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.41 E-value=8.1e-13 Score=137.56 Aligned_cols=149 Identities=19% Similarity=0.269 Sum_probs=109.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhh-----------hhhcCc----cCCC--hh-----hcCceEEEEecCcccccccHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGV----DIET--PD-----RRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~----~~~~--~~-----~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
+..|+.++|+|+|||||||+++. +++++. ++.. .. ..+.+.++++.+..+...++.++
T Consensus 47 i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eN 126 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEEN 126 (382)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHH
Confidence 57899999999999999999983 334442 1111 00 12457888888877777899988
Q ss_pred HHHhhh-------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 136 VAEEMD-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 136 v~~~~~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
+..... ......+|.. ...+..+..+|+|+++|+.++++++.+|+++++|| +++|....
T Consensus 127 i~~~~~~~g~~~~~~~~~a~e~le~vgL~------~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r 200 (382)
T TIGR03415 127 VAFGLEMQGMPEAERRKRVDEQLELVGLA------QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIR 200 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 864321 0111222321 22356677899999999999999999999999999 78899999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+.+.+.++.+.. +.++|++||.++. ..+++
T Consensus 201 ~~l~~~L~~l~~~~-~~TII~iTHdl~e~~~l~D 233 (382)
T TIGR03415 201 TQLQDELLELQAKL-NKTIIFVSHDLDEALKIGN 233 (382)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 99999999986643 7899999999864 34444
No 211
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.41 E-value=1.3e-12 Score=129.02 Aligned_cols=149 Identities=16% Similarity=0.105 Sum_probs=101.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCCh--hhcCceEEEEecCcccccccHHHHHHHhhh---------hcccc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETP--DRRRKMMIACTQPRRVAAMSVSRRVAEEMD---------VTIGE 146 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---------~~~~~ 146 (573)
+..|++++|+|+|||||||++..+.-........ .....+.++++.+......++.+.+..... ..+..
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~ 101 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK 101 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHH
Confidence 5689999999999999999998643211110000 011245566666554455677776642111 01111
Q ss_pred hhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecc
Q 008221 147 EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSA 224 (573)
Q Consensus 147 ~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SA 224 (573)
.+|.. ...+..+..+|+|+++|++++++++.++++++||| +++|......+..+++++.+.. +..+|++||
T Consensus 102 ~l~l~------~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiivsH 174 (246)
T cd03237 102 PLQIE------QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN-EKTAFVVEH 174 (246)
T ss_pred HcCCH------HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 12211 12346677899999999999999999999999999 8899899999999999987653 689999999
Q ss_pred cccH-HHHHc
Q 008221 225 TLEA-EKFQG 233 (573)
Q Consensus 225 Tl~~-~~~~~ 233 (573)
.++. ..+++
T Consensus 175 d~~~~~~~~d 184 (246)
T cd03237 175 DIIMIDYLAD 184 (246)
T ss_pred CHHHHHHhCC
Confidence 9753 33444
No 212
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.40 E-value=1.2e-12 Score=123.51 Aligned_cols=129 Identities=19% Similarity=0.291 Sum_probs=90.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh----hhcCceEEEEecCc---ccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----DRRRKMMIACTQPR---RVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~----~~~~~~~i~~t~p~---~~~~~~v~~~v~~~ 139 (573)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++++. .....++.+++...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~ 102 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS 102 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHH
Confidence 5689999999999999999998432 222221110 01223445554431 23334555544321
Q ss_pred hhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCc
Q 008221 140 MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDL 217 (573)
Q Consensus 140 ~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~ 217 (573)
. .+|+|+++|+.++++++.++++++||| +++|......+.+.++++.+. +.
T Consensus 103 ~-------------------------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~ 155 (182)
T cd03215 103 S-------------------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA--GK 155 (182)
T ss_pred h-------------------------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC--CC
Confidence 0 089999999999999999999999999 788889999999999988653 68
Q ss_pred EEEEeccccc-HHHHHc
Q 008221 218 KLVVMSATLE-AEKFQG 233 (573)
Q Consensus 218 ~iil~SATl~-~~~~~~ 233 (573)
++|++||.++ ...+++
T Consensus 156 tiii~sh~~~~~~~~~d 172 (182)
T cd03215 156 AVLLISSELDELLGLCD 172 (182)
T ss_pred EEEEEeCCHHHHHHhCC
Confidence 9999999874 344443
No 213
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=7.6e-13 Score=133.33 Aligned_cols=144 Identities=19% Similarity=0.292 Sum_probs=103.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCc-ccccccHHHHHHHhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~~ 142 (573)
+..|++++|+|+|||||||++..+ .+++.++.. ....+.+.++++++. .+...++.+++......
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~ 109 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLEN 109 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhh
Confidence 578999999999999999999843 233333211 112235677888773 44456888877532110
Q ss_pred -------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 143 -------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 143 -------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
.....+|.. ...+..+..+|+|+++++.++++++.+|+++|||| +++|......+.+++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l 183 (279)
T PRK13635 110 IGVPREEMVERVDQALRQVGME------DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETV 183 (279)
T ss_pred CCCCHHHHHHHHHHHHHHcCCh------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 011111211 22356677899999999999999999999999999 788989999999999
Q ss_pred HHHHHhCCCcEEEEecccccH
Q 008221 208 KEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~~ 228 (573)
+++.+.. +.++|++||.++.
T Consensus 184 ~~l~~~~-~~tilivsH~~~~ 203 (279)
T PRK13635 184 RQLKEQK-GITVLSITHDLDE 203 (279)
T ss_pred HHHHHcC-CCEEEEEecCHHH
Confidence 9887643 7899999999864
No 214
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=3.9e-13 Score=122.92 Aligned_cols=149 Identities=17% Similarity=0.230 Sum_probs=109.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC----hhhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET----PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
.+.+|++|++.||||+||||.|. .+++++.++.+ ...+.+++++|+++..+--++|.+++..-+.
T Consensus 26 ~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE 105 (243)
T COG1137 26 EVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE 105 (243)
T ss_pred EEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHh
Confidence 36789999999999999999887 45677776654 2234567889999998888999888743221
Q ss_pred hcc--c----ch--h-ceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 142 VTI--G----EE--V-GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 142 ~~~--~----~~--v-g~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
..- . .. + ..-..|.-....+..-..+|+|.+.|+.+++++..+|++++||| |+-|+.....+..+++.+
T Consensus 106 ~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L 185 (243)
T COG1137 106 IREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHL 185 (243)
T ss_pred hhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHH
Confidence 100 0 00 0 00001111112244556799999999999999999999999999 889999999999999988
Q ss_pred HHhCCCcEEEEeccccc
Q 008221 211 LKNRPDLKLVVMSATLE 227 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~ 227 (573)
..+ +.-+++.-|...
T Consensus 186 ~~r--giGvLITDHNVR 200 (243)
T COG1137 186 KDR--GIGVLITDHNVR 200 (243)
T ss_pred HhC--CceEEEccccHH
Confidence 665 899999988764
No 215
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.40 E-value=6.3e-13 Score=131.32 Aligned_cols=153 Identities=22% Similarity=0.354 Sum_probs=107.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhh----------------hhhcCccCCC---h----hhcCceEEEEecCccc--ccccH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQ----------------FVLEGVDIET---P----DRRRKMMIACTQPRRV--AAMSV 132 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~----------------~ll~~~~~~~---~----~~~~~~~i~~t~p~~~--~~~~v 132 (573)
+..|++++|+|++||||||+... +++++.++.. . -+.+.+.++++.|... +.+++
T Consensus 28 i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~I 107 (316)
T COG0444 28 LKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTI 107 (316)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhH
Confidence 67899999999999999997652 2233332211 1 1244678888887532 34444
Q ss_pred HHHHHHhh---------------hhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCc
Q 008221 133 SRRVAEEM---------------DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHE 195 (573)
Q Consensus 133 ~~~v~~~~---------------~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~ 195 (573)
-+.+.+.. .......||... .....+..+..+|+||+||++++.+++.+|++||.|| ..+
T Consensus 108 g~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~---~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTAL 184 (316)
T COG0444 108 GDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPD---PERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184 (316)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCC---HHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchh
Confidence 44443221 112223344321 0112366788999999999999999999999999999 668
Q ss_pred CcccHHHHHHHHHHHHHhCCCcEEEEeccccc-HHHHHch
Q 008221 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (573)
Q Consensus 196 r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~-~~~~~~~ 234 (573)
|......++++++++.++. +..+|++||++. +..+++.
T Consensus 185 Dvt~QaqIl~Ll~~l~~e~-~~aiilITHDl~vva~~aDr 223 (316)
T COG0444 185 DVTVQAQILDLLKELQREK-GTALILITHDLGVVAEIADR 223 (316)
T ss_pred hHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcce
Confidence 8888999999999998854 899999999997 4567764
No 216
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.40 E-value=1e-12 Score=130.51 Aligned_cols=148 Identities=18% Similarity=0.285 Sum_probs=102.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-----------hhhcCceEEEEecCcccccccHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-----------PDRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-----------~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ......+.++++.+......++.++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 105 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLEN 105 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHH
Confidence 5789999999999999999998432 22222110 0112346777777766656788777
Q ss_pred HHHhh----hh----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCccc
Q 008221 136 VAEEM----DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (573)
Q Consensus 136 v~~~~----~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~ 199 (573)
+.... +. .....+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|...
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~ 179 (250)
T PRK11264 106 IIEGPVIVKGEPKEEATARARELLAKVGLA------GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPEL 179 (250)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCc------chhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 74311 00 001111211 12345677899999999999999999999999999 7888888
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
...+.++++++.+. +..+|++||..+. ..+++
T Consensus 180 ~~~l~~~l~~~~~~--~~tvi~~tH~~~~~~~~~d 212 (250)
T PRK11264 180 VGEVLNTIRQLAQE--KRTMVIVTHEMSFARDVAD 212 (250)
T ss_pred HHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcC
Confidence 99999999988653 6789999998753 33444
No 217
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=8e-13 Score=130.57 Aligned_cols=148 Identities=18% Similarity=0.306 Sum_probs=103.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCC-----C----hhhcCceEEEEecCcccccccHHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIE-----T----PDRRRKMMIACTQPRRVAAMSVSRRVA 137 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~-----~----~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (573)
+..|+.++|.|+|||||||++..+ .+++.++. . ....+.+.++++.+......++.+++.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~ 104 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI 104 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHH
Confidence 568999999999999999999843 23332210 0 011235677888777666678888774
Q ss_pred Hhh----hh----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 138 EEM----DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 138 ~~~----~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
... +. .....+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|.....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~ 178 (242)
T PRK11124 105 EAPCRVLGLSKDQALARAEKLLERLRLK------PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITA 178 (242)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCh------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHH
Confidence 210 00 001111211 22355677899999999999999999999999999 788888888
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+.++++++.+. +.++|++||..+. ..+++
T Consensus 179 ~l~~~l~~~~~~--~~tii~~sh~~~~~~~~~d 209 (242)
T PRK11124 179 QIVSIIRELAET--GITQVIVTHEVEVARKTAS 209 (242)
T ss_pred HHHHHHHHHHHc--CCEEEEEeCCHHHHHHhcC
Confidence 999999987543 6889999998864 23444
No 218
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.40 E-value=8.3e-13 Score=126.57 Aligned_cols=142 Identities=19% Similarity=0.170 Sum_probs=98.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (573)
+..|+.++|+|+|||||||++..+. +++..... ....+.+.++++++......++.+++......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 102 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHS 102 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccccc
Confidence 6789999999999999999988432 22222111 11123466677666555567787776432110
Q ss_pred -----cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCC
Q 008221 143 -----TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (573)
Q Consensus 143 -----~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~ 215 (573)
.....+|.. ...++.+..+|+|+++|+.++++++.+++++|||| +++|......+.++++++.+.
T Consensus 103 ~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-- 174 (201)
T cd03231 103 DEQVEEALARVGLN------GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR-- 174 (201)
T ss_pred HHHHHHHHHHcCCh------hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 111112211 12345677899999999999999999999999999 788888889999999887543
Q ss_pred CcEEEEeccccc
Q 008221 216 DLKLVVMSATLE 227 (573)
Q Consensus 216 ~~~iil~SATl~ 227 (573)
+.++|++||...
T Consensus 175 g~tiii~sH~~~ 186 (201)
T cd03231 175 GGMVVLTTHQDL 186 (201)
T ss_pred CCEEEEEecCch
Confidence 678999999753
No 219
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=7.4e-13 Score=134.80 Aligned_cols=149 Identities=19% Similarity=0.234 Sum_probs=103.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCC--------------------------C-hhhcCceEE
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIE--------------------------T-PDRRRKMMI 119 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~--------------------------~-~~~~~~~~i 119 (573)
+..|+.++|+|+|||||||++..+. +++.... . ....+.+++
T Consensus 30 i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~ 109 (305)
T PRK13651 30 INQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGV 109 (305)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEE
Confidence 5789999999999999999998332 2221110 0 111345678
Q ss_pred EEecCc-ccccccHHHHHHHhh---h----------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCC
Q 008221 120 ACTQPR-RVAAMSVSRRVAEEM---D----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERY 185 (573)
Q Consensus 120 ~~t~p~-~~~~~~v~~~v~~~~---~----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~ 185 (573)
++++|. .+...++.+++.... + ......+|.. ....+..+..+|+|+++|+.++++++.+|
T Consensus 110 v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----~~~~~~~~~~LSgGqkqrvalA~aL~~~P 184 (305)
T PRK13651 110 VFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD-----ESYLQRSPFELSGGQKRRVALAGILAMEP 184 (305)
T ss_pred EeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC-----hhhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 888763 334457777775321 1 0111122211 01235677889999999999999999999
Q ss_pred cEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 186 KVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 186 ~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
+++|||| +++|......++++++++.+. +.++|++||.++ ...+++
T Consensus 185 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tiiivtHd~~~~~~~ad 233 (305)
T PRK13651 185 DFLVFDEPTAGLDPQGVKEILEIFDNLNKQ--GKTIILVTHDLDNVLEWTK 233 (305)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeeCHHHHHHhCC
Confidence 9999999 888889999999999998643 789999999986 345554
No 220
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=9e-13 Score=133.36 Aligned_cols=150 Identities=19% Similarity=0.329 Sum_probs=104.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-------hhhcCceEEEEecCc-ccccccHHHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-------PDRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-------~~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (573)
|..|+.++|+|+|||||||++..+ .+++..+.. ....+.+++++++|. .+...++.+++..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~ 109 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIF 109 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHh
Confidence 578999999999999999999843 233333211 012345778888763 2222477777643
Q ss_pred hhh---h----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHH
Q 008221 139 EMD---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (573)
Q Consensus 139 ~~~---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~l 203 (573)
... . .....+|+. ....++.+..+|+|+++|+.++++++.+|+++|||| +++|......+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~-----~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l 184 (286)
T PRK13646 110 GPKNFKMNLDEVKNYAHRLLMDLGFS-----RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQV 184 (286)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCCC-----hhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 210 0 011112221 012345678899999999999999999999999999 78899999999
Q ss_pred HHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 204 FGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 204 l~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.++++++.... +.++|++||.++. ..+++
T Consensus 185 ~~~l~~l~~~~-g~tvl~vtH~~~~~~~~~d 214 (286)
T PRK13646 185 MRLLKSLQTDE-NKTIILVSHDMNEVARYAD 214 (286)
T ss_pred HHHHHHHHHhC-CCEEEEEecCHHHHHHhCC
Confidence 99999986543 7899999999863 34444
No 221
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.1e-12 Score=134.67 Aligned_cols=151 Identities=21% Similarity=0.272 Sum_probs=105.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCCh------hhcCceEEEEecCc--ccccccHHHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP------DRRRKMMIACTQPR--RVAAMSVSRRVAE 138 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~------~~~~~~~i~~t~p~--~~~~~~v~~~v~~ 138 (573)
|..|+.++|+|+|||||||++..+ .+++.++... ..++.+.++++.|. ....+++.+.+..
T Consensus 38 i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~ 117 (327)
T PRK11308 38 LERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEE 117 (327)
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHH
Confidence 578999999999999999998843 2333332211 12345788888873 2344566555532
Q ss_pred hhh--------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 139 EMD--------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 139 ~~~--------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
... ......+|.. ....+..+..+|+|++||++++++++.++++||+|| +++|......
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~~gL~-----~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~ 192 (327)
T PRK11308 118 PLLINTSLSAAERREKALAMMAKVGLR-----PEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQ 192 (327)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHCCCC-----hHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHH
Confidence 110 1112222321 012356778899999999999999999999999999 7888888999
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccHH-HHHch
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEAE-KFQGY 234 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~~-~~~~~ 234 (573)
++++|+++.+.. +..+|++||.++.. .+++.
T Consensus 193 i~~lL~~l~~~~-g~til~iTHdl~~~~~~adr 224 (327)
T PRK11308 193 VLNLMMDLQQEL-GLSYVFISHDLSVVEHIADE 224 (327)
T ss_pred HHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCE
Confidence 999999987654 78999999998643 45543
No 222
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=9.1e-13 Score=131.90 Aligned_cols=155 Identities=19% Similarity=0.201 Sum_probs=102.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+......++.+++......
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPW 113 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccc
Confidence 5689999999999999999988432 22222110 11123466777766555566787777532100
Q ss_pred ---------cccchhce-eeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 ---------TIGEEVGY-SIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 ---------~~~~~vg~-~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.....+.. ...+.-....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.++++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l 193 (265)
T PRK10575 114 HGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193 (265)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 00000000 000000112345677899999999999999999999999999 788888899999999998
Q ss_pred HHhCCCcEEEEecccccH-HHHHc
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+.. +..+|++||.++. ..+++
T Consensus 194 ~~~~-~~tiii~sH~~~~i~~~~d 216 (265)
T PRK10575 194 SQER-GLTVIAVLHDINMAARYCD 216 (265)
T ss_pred HHhc-CCEEEEEeCCHHHHHHhCC
Confidence 6543 6899999998763 34444
No 223
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1e-12 Score=130.86 Aligned_cols=155 Identities=18% Similarity=0.240 Sum_probs=103.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh---h-hcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---D-RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~---~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
+..|+.++|+|+|||||||++..+. +++..+... . ....+.++++++......++.+++......
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 107 (255)
T PRK11300 28 VREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQ 107 (255)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhc
Confidence 5689999999999999999998332 223222110 1 122355677777766667888877532100
Q ss_pred --------c---------c----cchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcc
Q 008221 143 --------T---------I----GEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTL 198 (573)
Q Consensus 143 --------~---------~----~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~ 198 (573)
. . ...+. +...+.-....+..+..+|+|+++|+.++++++.+|+++|||| +++|..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~ 187 (255)
T PRK11300 108 QLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPK 187 (255)
T ss_pred cccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHH
Confidence 0 0 00000 0000000112356677899999999999999999999999999 788889
Q ss_pred cHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 199 ATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 199 ~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
....+.++|+++.+.. +.++|+.||.++. ..+++
T Consensus 188 ~~~~l~~~L~~~~~~~-~~tii~~sH~~~~~~~~~d 222 (255)
T PRK11300 188 ETKELDELIAELRNEH-NVTVLLIEHDMKLVMGISD 222 (255)
T ss_pred HHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHHHhCC
Confidence 9999999999886643 6899999998853 34443
No 224
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.1e-12 Score=131.87 Aligned_cols=143 Identities=20% Similarity=0.258 Sum_probs=101.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC----hhhcCceEEEEecCcc-cccccHHHHHHHhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET----PDRRRKMMIACTQPRR-VAAMSVSRRVAEEMD 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~----~~~~~~~~i~~t~p~~-~~~~~v~~~v~~~~~ 141 (573)
+..|++++|+|+|||||||++..+ .+++..+.. ......+.++++.|.. +...++.+++.....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 104 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPE 104 (274)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHH
Confidence 578999999999999999999843 233332211 1112346778887642 445677777643211
Q ss_pred h-------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHH
Q 008221 142 V-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (573)
Q Consensus 142 ~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~ 206 (573)
. .....+|+. ...+..+..+|+|+++|+.++++++.+|++++||| +++|......+++.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~ 178 (274)
T PRK13644 105 NLCLPPIEIRKRVDRALAEIGLE------KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER 178 (274)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCH------HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 0 011111211 22356678899999999999999999999999999 78888888999999
Q ss_pred HHHHHHhCCCcEEEEecccccH
Q 008221 207 LKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 207 l~~l~~~~~~~~iil~SATl~~ 228 (573)
++++.+. +.++|++||.++.
T Consensus 179 l~~l~~~--g~til~~tH~~~~ 198 (274)
T PRK13644 179 IKKLHEK--GKTIVYITHNLEE 198 (274)
T ss_pred HHHHHhC--CCEEEEEecCHHH
Confidence 9987643 7899999999864
No 225
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.39 E-value=1.1e-12 Score=125.45 Aligned_cols=141 Identities=20% Similarity=0.237 Sum_probs=97.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhhhhc-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT- 143 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~- 143 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++++......++.+++.......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 102 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG 102 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC
Confidence 5689999999999999999998432 22221111 011234556666555555577887764321110
Q ss_pred --------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHh
Q 008221 144 --------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (573)
Q Consensus 144 --------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~ 213 (573)
....+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......+.+.++++.+.
T Consensus 103 ~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 176 (198)
T TIGR01189 103 GAQRTIEDALAAVGLT------GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176 (198)
T ss_pred CcHHHHHHHHHHcCCH------HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 01111211 12356677899999999999999999999999999 788888888899999887543
Q ss_pred CCCcEEEEecccc
Q 008221 214 RPDLKLVVMSATL 226 (573)
Q Consensus 214 ~~~~~iil~SATl 226 (573)
+.++|++||..
T Consensus 177 --~~tii~~sH~~ 187 (198)
T TIGR01189 177 --GGIVLLTTHQD 187 (198)
T ss_pred --CCEEEEEEccc
Confidence 67899999965
No 226
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.39 E-value=1.1e-12 Score=129.39 Aligned_cols=149 Identities=14% Similarity=0.240 Sum_probs=100.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-----hhhcCceEEEEecCcccccccHHHHHHHhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-----PDRRRKMMIACTQPRRVAAMSVSRRVAEEM- 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~- 140 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++.+......++.+++....
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 103 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPL 103 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHH
Confidence 5689999999999999999988432 33322211 011234677777776666678887774321
Q ss_pred ---hhc---ccchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHH
Q 008221 141 ---DVT---IGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (573)
Q Consensus 141 ---~~~---~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~ 211 (573)
+.. ....+. ....+.-....+..+..+|+|+++|+.++++++.++++++||| +++|......+.++++++.
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 183 (240)
T PRK09493 104 RVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLA 183 (240)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 000 000010 0000110112345677899999999999999999999999999 7788888889999998875
Q ss_pred HhCCCcEEEEecccccH
Q 008221 212 KNRPDLKLVVMSATLEA 228 (573)
Q Consensus 212 ~~~~~~~iil~SATl~~ 228 (573)
+. +.++|++||.++.
T Consensus 184 ~~--~~tiii~sH~~~~ 198 (240)
T PRK09493 184 EE--GMTMVIVTHEIGF 198 (240)
T ss_pred Hc--CCEEEEEeCCHHH
Confidence 43 6899999998864
No 227
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.2e-12 Score=131.56 Aligned_cols=145 Identities=19% Similarity=0.345 Sum_probs=101.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCc-ccccccHHHHHHHhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEMD 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~ 141 (573)
.+..|+.++|+|+|||||||++..+ .+++.++.. ....+.+.++++.+. .+...++.+++.....
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 110 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLE 110 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHH
Confidence 3578999999999999999998833 233322211 111234667777763 3445688887743211
Q ss_pred ---hc----------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHH
Q 008221 142 ---VT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (573)
Q Consensus 142 ---~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~ 206 (573)
.. +...+|.. ...+..+..+|+|+++|+.++++++.++++++||| +++|......++++
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~ 184 (271)
T PRK13632 111 NKKVPPKKMKDIIDDLAKKVGME------DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKI 184 (271)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCH------HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 00 01111211 22356678899999999999999999999999999 78888889999999
Q ss_pred HHHHHHhCCCcEEEEecccccH
Q 008221 207 LKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 207 l~~l~~~~~~~~iil~SATl~~ 228 (573)
++++.+.. +..+|++||.++.
T Consensus 185 l~~~~~~~-~~tiii~sH~~~~ 205 (271)
T PRK13632 185 MVDLRKTR-KKTLISITHDMDE 205 (271)
T ss_pred HHHHHHhc-CcEEEEEEechhH
Confidence 99886542 4789999998864
No 228
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.39 E-value=8.6e-13 Score=129.07 Aligned_cols=151 Identities=22% Similarity=0.308 Sum_probs=100.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh------hhcCceEEEEecCc--ccccccHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPR--RVAAMSVSRRVA 137 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~--~~~~~~v~~~v~ 137 (573)
.+..|+.++|+|+|||||||++..+. +++..+... ...+.+.++++++. .....++.+++.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~ 106 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIA 106 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHH
Confidence 35689999999999999999988432 233222110 11234667777762 334567777764
Q ss_pred Hhhhh---c----ccchh--ceeeeeccc-ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 138 EEMDV---T----IGEEV--GYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 138 ~~~~~---~----~~~~v--g~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
..... . ..... .....+.-. ...+..+..+|+|+++|+.++++++.++++++||| +++|......+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 186 (228)
T cd03257 107 EPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILD 186 (228)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHH
Confidence 21100 0 00000 000011110 12355677899999999999999999999999999 7888899999999
Q ss_pred HHHHHHHhCCCcEEEEecccccH
Q 008221 206 LLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~~ 228 (573)
.++++.+.. +..+|++||.++.
T Consensus 187 ~l~~~~~~~-~~tii~~sH~~~~ 208 (228)
T cd03257 187 LLKKLQEEL-GLTLLFITHDLGV 208 (228)
T ss_pred HHHHHHHHc-CCEEEEEeCCHHH
Confidence 999886642 6799999998753
No 229
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.39 E-value=1.2e-12 Score=127.72 Aligned_cols=147 Identities=18% Similarity=0.272 Sum_probs=103.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChhhcCceEEEEecCcccccccHHHHHHHhh---hh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM---DV- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~~- 142 (573)
+..|+.++|.|+|||||||++..+. +++..+.. ...+.+.++++++......++.+++.... +.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~-~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~ 101 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR-KDLHKIGSLIESPPLYENLTARENLKVHTTLLGLP 101 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccc-cccccEEEEcCCCCccccCCHHHHHHHHHHHcCCC
Confidence 5789999999999999999988433 11111110 11134667777776666678888774321 10
Q ss_pred -----cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCC
Q 008221 143 -----TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (573)
Q Consensus 143 -----~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~ 215 (573)
.....+|.. ...+..+..+|+|+++|+.++++++.++++++||| +++|....+.+..+++++.+.
T Consensus 102 ~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~-- 173 (223)
T TIGR03740 102 DSRIDEVLNIVDLT------NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ-- 173 (223)
T ss_pred HHHHHHHHHHcCCc------HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHC--
Confidence 011112211 12345677899999999999999999999999999 788888899999999988543
Q ss_pred CcEEEEecccccH-HHHHc
Q 008221 216 DLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 216 ~~~iil~SATl~~-~~~~~ 233 (573)
+.++|++||..+. ..+++
T Consensus 174 ~~tiii~sH~~~~~~~~~d 192 (223)
T TIGR03740 174 GITVILSSHILSEVQQLAD 192 (223)
T ss_pred CCEEEEEcCCHHHHHHhcC
Confidence 6789999998763 34554
No 230
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=1.2e-12 Score=129.13 Aligned_cols=149 Identities=18% Similarity=0.237 Sum_probs=103.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--h-h-hcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--P-D-RRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~-~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
.+..|+.++|+|+|||||||++..+. +++..+.. . . ....+.++++.+......++.+++.....
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 104 (241)
T PRK10895 25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQ 104 (241)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhh
Confidence 35689999999999999999998432 22222111 0 1 12456777877766666788877643211
Q ss_pred h--------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 142 V--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 142 ~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
. .....+|.. ...+..+..+|+|+++|+.++++++.++++++||| +++|......+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (241)
T PRK10895 105 IRDDLSAEQREDRANELMEEFHIE------HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKR 178 (241)
T ss_pred cccccCHHHHHHHHHHHHHHcCCH------HHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 0 001111111 12245677899999999999999999999999999 7888888888889
Q ss_pred HHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
+++.+.+. +..+|++||.++ ...+++
T Consensus 179 ~l~~~~~~--g~tiii~sH~~~~~~~~~d 205 (241)
T PRK10895 179 IIEHLRDS--GLGVLITDHNVRETLAVCE 205 (241)
T ss_pred HHHHHHhc--CCEEEEEEcCHHHHHHhcC
Confidence 99887543 689999999874 344443
No 231
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=9.6e-13 Score=129.56 Aligned_cols=155 Identities=18% Similarity=0.253 Sum_probs=103.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCCh----hhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
.+..|+.++|+|+|||||||++..+ .+++..+... ...+.+.++++.+......++.+++.....
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 106 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGF 106 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhh
Confidence 3578999999999999999999843 2233222110 112346677777766666788877753211
Q ss_pred h-c---ccchhc-eeeeec-ccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHh
Q 008221 142 V-T---IGEEVG-YSIRFE-DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (573)
Q Consensus 142 ~-~---~~~~vg-~~~~~~-~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~ 213 (573)
. . ....+. ....+. .....+..+..+|+|+++|+.++++++.++++++||| +++|......+.+.++++.+.
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (237)
T PRK11614 107 FAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186 (237)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHC
Confidence 0 0 000000 000000 0012245677899999999999999999999999999 788888889999999987653
Q ss_pred CCCcEEEEeccccc-HHHHHc
Q 008221 214 RPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 214 ~~~~~iil~SATl~-~~~~~~ 233 (573)
+..+|++||.++ ...+++
T Consensus 187 --~~tiii~sH~~~~~~~~~d 205 (237)
T PRK11614 187 --GMTIFLVEQNANQALKLAD 205 (237)
T ss_pred --CCEEEEEeCcHHHHHhhCC
Confidence 789999999875 344544
No 232
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=1.4e-12 Score=132.25 Aligned_cols=150 Identities=21% Similarity=0.296 Sum_probs=104.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-------hhhcCceEEEEecCc-ccccccHHHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-------PDRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-------~~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (573)
|..|++++|+|+|||||||++..+ .+++..+.. ....+.+++++++|. .+...++.+++..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~ 109 (290)
T PRK13634 30 IPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICF 109 (290)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHH
Confidence 578999999999999999999843 233332210 112235677888763 2334577777753
Q ss_pred hhh---h----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHH
Q 008221 139 EMD---V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (573)
Q Consensus 139 ~~~---~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~l 203 (573)
... . .....+|.. ....++.+..+|+|+++|+.++++++.+|+++|||| +++|......+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~-----~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l 184 (290)
T PRK13634 110 GPMNFGVSEEDAKQKAREMIELVGLP-----EELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEM 184 (290)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCC-----hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 211 0 011112211 011356778899999999999999999999999999 78898999999
Q ss_pred HHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 204 FGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 204 l~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++++++.+.. +.++|++||.++. ..+++
T Consensus 185 ~~~L~~l~~~~-g~tviiitHd~~~~~~~~d 214 (290)
T PRK13634 185 MEMFYKLHKEK-GLTTVLVTHSMEDAARYAD 214 (290)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 99999886643 7899999999863 44554
No 233
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.38 E-value=1.4e-12 Score=129.64 Aligned_cols=149 Identities=21% Similarity=0.330 Sum_probs=103.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC----------------hhhcCceEEEEecCcccccc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET----------------PDRRRKMMIACTQPRRVAAM 130 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~----------------~~~~~~~~i~~t~p~~~~~~ 130 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++.+......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHK 102 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCC
Confidence 5689999999999999999998432 23322110 01124567777777666667
Q ss_pred cHHHHHHHhh----hh----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CC
Q 008221 131 SVSRRVAEEM----DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AH 194 (573)
Q Consensus 131 ~v~~~v~~~~----~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~ 194 (573)
++.+++.... +. .....+|+. ...+..+..+|+|+++|+.++++++.+++++|||| ++
T Consensus 103 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 176 (252)
T TIGR03005 103 TVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA------DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSA 176 (252)
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh------hHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 8887775311 00 001111211 12345667899999999999999999999999999 78
Q ss_pred cCcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 195 ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 195 ~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+|......+.+.++++.+.. +.++|++||.++. ..+++
T Consensus 177 LD~~~~~~l~~~l~~~~~~~-~~tiiivsH~~~~~~~~~d 215 (252)
T TIGR03005 177 LDPELVGEVLNVIRRLASEH-DLTMLLVTHEMGFAREFAD 215 (252)
T ss_pred CCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhcC
Confidence 88888888999999887643 6899999998864 23443
No 234
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=1.6e-12 Score=123.68 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=92.3
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCc--cCCC----------hhhcCceEEEEecCcccccccHHHHHHHhhhhcc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGV--DIET----------PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~--~~~~----------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (573)
.+..|+.++|+|+|||||||++..+.-... .... ....+.+.++++.+......++.+++......
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-- 106 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL-- 106 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHH--
Confidence 357899999999999999999986541100 0000 00122355556555555556777766532100
Q ss_pred cchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEe
Q 008221 145 GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (573)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~ 222 (573)
..+|+|+++|+.++++++.+++++++|| +++|......+.+.++++.+. +.++|++
T Consensus 107 --------------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiiiv 164 (192)
T cd03232 107 --------------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS--GQAILCT 164 (192)
T ss_pred --------------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHc--CCEEEEE
Confidence 0699999999999999999999999999 788888889999999987653 7899999
Q ss_pred ccccc
Q 008221 223 SATLE 227 (573)
Q Consensus 223 SATl~ 227 (573)
||.++
T Consensus 165 tH~~~ 169 (192)
T cd03232 165 IHQPS 169 (192)
T ss_pred EcCCh
Confidence 99976
No 235
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.38 E-value=1.5e-12 Score=129.89 Aligned_cols=143 Identities=20% Similarity=0.260 Sum_probs=101.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC----------------hhhcCceEEEEecCcccccc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET----------------PDRRRKMMIACTQPRRVAAM 130 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~----------------~~~~~~~~i~~t~p~~~~~~ 130 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++.+......
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 107 (257)
T PRK10619 28 ANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM 107 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCC
Confidence 5689999999999999999998332 23222110 01123577888877666667
Q ss_pred cHHHHHHHhh----h----------hcccchhceeeeeccccc-ccccccccCHHHHHHHHhcccccCCCcEEEEeC--C
Q 008221 131 SVSRRVAEEM----D----------VTIGEEVGYSIRFEDCSS-ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--A 193 (573)
Q Consensus 131 ~v~~~v~~~~----~----------~~~~~~vg~~~~~~~~~~-~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a 193 (573)
++.+++.... . ......+|.. .. .+..+..+|+|+++|+.++++++.+|+++|||| +
T Consensus 108 sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 181 (257)
T PRK10619 108 TVLENVMEAPIQVLGLSKQEARERAVKYLAKVGID------ERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTS 181 (257)
T ss_pred cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCC------hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 8888874211 0 0111112211 11 145677899999999999999999999999999 7
Q ss_pred CcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 194 HERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 194 ~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
++|......+.++++++.+. +..+|++||..+.
T Consensus 182 ~LD~~~~~~l~~~l~~l~~~--g~tiiivsH~~~~ 214 (257)
T PRK10619 182 ALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMGF 214 (257)
T ss_pred cCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHH
Confidence 88888899999999988653 7899999998753
No 236
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.38 E-value=1.3e-12 Score=130.58 Aligned_cols=155 Identities=20% Similarity=0.231 Sum_probs=104.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh--------------cCccCCC--------hhhcCceEEEEecCcccccccHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL--------------EGVDIET--------PDRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll--------------~~~~~~~--------~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
+..|+.++|+|+|||||||++..+.- ++..+.. ....+.+.++++.+......++.++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 106 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLEN 106 (262)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHH
Confidence 56899999999999999999984431 1111100 0012346777877766666788887
Q ss_pred HHHhhhh--------------cccchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcc
Q 008221 136 VAEEMDV--------------TIGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTL 198 (573)
Q Consensus 136 v~~~~~~--------------~~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~ 198 (573)
+...... .....+. +...+.-....+..+..+|+|+++|+.++++++.+|+++|||| +++|..
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 186 (262)
T PRK09984 107 VLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPE 186 (262)
T ss_pred HHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHH
Confidence 7532100 0000000 0000111112355677899999999999999999999999999 788889
Q ss_pred cHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 199 ATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 199 ~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
....+.+.++++.+.. +.++|++||.++. ..+++
T Consensus 187 ~~~~l~~~l~~~~~~~-g~tvii~tH~~~~~~~~~d 221 (262)
T PRK09984 187 SARIVMDTLRDINQND-GITVVVTLHQVDYALRYCE 221 (262)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 9999999999987643 6899999999863 55554
No 237
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=1.4e-12 Score=126.24 Aligned_cols=148 Identities=21% Similarity=0.286 Sum_probs=102.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-------hhhcCceEEEEecCcccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+.. +.++|+|+|||||||++..+. +++..+.. ....+.+.++++.+......++.+++...
T Consensus 21 i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 99 (214)
T cd03297 21 LNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFG 99 (214)
T ss_pred Ecc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHH
Confidence 567 999999999999999988432 22222110 01123466777777655567787776432
Q ss_pred hhh-----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHH
Q 008221 140 MDV-----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (573)
Q Consensus 140 ~~~-----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~ 206 (573)
... .....+|+. ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......+.++
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (214)
T cd03297 100 LKRKRNREDRISVDELLDLLGLD------HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173 (214)
T ss_pred HhhCCHHHHHHHHHHHHHHcCCH------hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 110 011112211 12345677899999999999999999999999999 78888899999999
Q ss_pred HHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 207 LKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 207 l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++++.+.. +.++|++||.++. ..+++
T Consensus 174 l~~~~~~~-~~tiii~sH~~~~~~~~~d 200 (214)
T cd03297 174 LKQIKKNL-NIPVIFVTHDLSEAEYLAD 200 (214)
T ss_pred HHHHHHHc-CcEEEEEecCHHHHHHhcC
Confidence 99887643 6789999998853 34443
No 238
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.38 E-value=1.8e-12 Score=126.64 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=103.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcC--------------ccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEG--------------VDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~--------------~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (573)
+..|+.++++|+|||||||++..+.-.. .........+.+.++++.+.....+++.+++.......
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 109 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILR 109 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhh
Confidence 5789999999999999999998543111 11100112334667777776666778888775321100
Q ss_pred c----c-----chhce-eee-ecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 144 I----G-----EEVGY-SIR-FEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 144 ~----~-----~~vg~-~~~-~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
. . ..+.. ... +......++.+..+|+|+.+|+.++++++.+++++++|| +++|......+.++++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~ 189 (226)
T cd03234 110 LPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL 189 (226)
T ss_pred cccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 0 0 00000 000 000112245677899999999999999999999999999 788888899999999987
Q ss_pred HHhCCCcEEEEecccc--cHHHHHc
Q 008221 211 LKNRPDLKLVVMSATL--EAEKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl--~~~~~~~ 233 (573)
.+. +.++|++||.. ....+++
T Consensus 190 ~~~--~~tiii~sh~~~~~~~~~~d 212 (226)
T cd03234 190 ARR--NRIVILTIHQPRSDLFRLFD 212 (226)
T ss_pred HHC--CCEEEEEecCCCHHHHHhCC
Confidence 654 67999999997 3455554
No 239
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.38 E-value=1.3e-12 Score=127.14 Aligned_cols=147 Identities=18% Similarity=0.287 Sum_probs=101.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD--- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~--- 141 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++++......++.+++.....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 104 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG 104 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC
Confidence 5789999999999999999998432 22222111 1112346777777766666788777643211
Q ss_pred h----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 142 V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 142 ~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
. .....+|. ....++.+..+|+|+++|+.++++++.+++++|+|| +++|......+.+.+++
T Consensus 105 ~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 178 (220)
T cd03263 105 LPKSEIKEEVELLLRVLGL------TDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178 (220)
T ss_pred CCHHHHHHHHHHHHHHcCC------HHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 0 00111111 112245677899999999999999999999999999 78888888889999988
Q ss_pred HHHhCCCcEEEEecccccH-HHHHc
Q 008221 210 VLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+.+ +..+|++||.++. ..+++
T Consensus 179 ~~~---~~tii~~sH~~~~~~~~~d 200 (220)
T cd03263 179 VRK---GRSIILTTHSMDEAEALCD 200 (220)
T ss_pred Hhc---CCEEEEEcCCHHHHHHhcC
Confidence 743 4789999998763 33443
No 240
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.37 E-value=1.8e-12 Score=128.10 Aligned_cols=154 Identities=18% Similarity=0.227 Sum_probs=103.3
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh----hhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
.+..|+.++|.|+|||||||++..+. +++..+... .....+.++++.+......++.+++.....
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~ 103 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALP 103 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhh
Confidence 35689999999999999999988432 222222110 012346777877776667788887643211
Q ss_pred hc--------------ccchhceee-eecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 142 VT--------------IGEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 142 ~~--------------~~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
.. ....+.... .+.-....+..+..+|+|+++|+.++++++.++++++||| +++|......+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~ 183 (242)
T TIGR03411 104 RDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA 183 (242)
T ss_pred cccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHH
Confidence 00 000000000 0011112356677899999999999999999999999999 788889899999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++++++.+ +..+|++||.++. ..+++
T Consensus 184 ~~l~~~~~---~~tii~~sH~~~~~~~~~d 210 (242)
T TIGR03411 184 ELLKSLAG---KHSVVVVEHDMEFVRSIAD 210 (242)
T ss_pred HHHHHHhc---CCEEEEEECCHHHHHHhCC
Confidence 99998753 4799999998753 33443
No 241
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.37 E-value=1.8e-12 Score=126.54 Aligned_cols=144 Identities=17% Similarity=0.230 Sum_probs=99.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ......+.++++.+.... .++.+++.....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~ 108 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIR 108 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhc
Confidence 5689999999999999999998432 22221111 011234566776665444 477777642110
Q ss_pred ---------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 142 ---------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 142 ---------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
......+|.. ....+..+..+|+|+++|+.++++++.+++++|||| +++|......+..+++++
T Consensus 109 ~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (225)
T PRK10247 109 NQQPDPAIFLDDLERFALP-----DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRY 183 (225)
T ss_pred CCChHHHHHHHHHHHcCCC-----hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 0111112211 012356677899999999999999999999999999 888888889999999988
Q ss_pred HHhCCCcEEEEecccccH
Q 008221 211 LKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~ 228 (573)
.+.. +.++|++||..+.
T Consensus 184 ~~~~-~~tvii~sh~~~~ 200 (225)
T PRK10247 184 VREQ-NIAVLWVTHDKDE 200 (225)
T ss_pred HHhc-CCEEEEEECChHH
Confidence 7653 6789999998764
No 242
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.37 E-value=1.5e-12 Score=130.35 Aligned_cols=150 Identities=19% Similarity=0.274 Sum_probs=103.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhh-h
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM-D 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~-~ 141 (573)
.+..|+.++|+|+|||||||++..+. +++..+.. ......+.++++.+......++.+++.... .
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~ 108 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYP 108 (265)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCccc
Confidence 35689999999999999999998432 22222111 111234677777776555567777664321 0
Q ss_pred h----------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHH
Q 008221 142 V----------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (573)
Q Consensus 142 ~----------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~l 203 (573)
. .....+|.. ...++.+..+|+|+++|+.++++++.+|+++++|| .++|......+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l 182 (265)
T PRK10253 109 HQPLFTRWRKEDEEAVTKAMQATGIT------HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDL 182 (265)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCCH------HHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 0 001111111 12356778899999999999999999999999999 78888889999
Q ss_pred HHHHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 204 l~~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
.++++++.+.. +..+|++||.++ ...+++
T Consensus 183 ~~~L~~l~~~~-~~tiii~tH~~~~~~~~~d 212 (265)
T PRK10253 183 LELLSELNREK-GYTLAAVLHDLNQACRYAS 212 (265)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 99999886543 689999999886 344554
No 243
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.37 E-value=2.7e-12 Score=114.46 Aligned_cols=149 Identities=21% Similarity=0.255 Sum_probs=109.3
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCC-------hhhcCceEEEEecCcccccccHHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (573)
.+..|+.++|+||+||||||++.. +.+.+..+.+ .-+.+.++++++.-..++.++..++++-
T Consensus 32 ~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l 111 (228)
T COG4181 32 VVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL 111 (228)
T ss_pred EecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence 367899999999999999999862 2222222221 1134568889988888888888888743
Q ss_pred hh-------------hhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHH
Q 008221 139 EM-------------DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (573)
Q Consensus 139 ~~-------------~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~l 203 (573)
.. .......||... .....+..+|+|..||+.+++++...|++++.|| -.+|....+.+
T Consensus 112 PleL~ge~~~~~~~~A~~lL~~vGLg~------Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~i 185 (228)
T COG4181 112 PLELRGESSADSRAGAKALLEAVGLGK------RLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI 185 (228)
T ss_pred hhhhcCCccccHHHHHHHHHHHhCccc------ccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHH
Confidence 21 122334566552 3345677899999999999999999999999999 45666777788
Q ss_pred HHHHHHHHHhCCCcEEEEecccccHHHHH
Q 008221 204 FGLLKEVLKNRPDLKLVVMSATLEAEKFQ 232 (573)
Q Consensus 204 l~~l~~l~~~~~~~~iil~SATl~~~~~~ 232 (573)
.+++-.+...+ +.++|+++|+.....-|
T Consensus 186 aDLlF~lnre~-G~TlVlVTHD~~LA~Rc 213 (228)
T COG4181 186 ADLLFALNRER-GTTLVLVTHDPQLAARC 213 (228)
T ss_pred HHHHHHHhhhc-CceEEEEeCCHHHHHhh
Confidence 88888887776 89999999987544433
No 244
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=1.7e-12 Score=130.88 Aligned_cols=144 Identities=24% Similarity=0.342 Sum_probs=100.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC----hhhcCceEEEEecCc-ccccccHHHHHHHhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET----PDRRRKMMIACTQPR-RVAAMSVSRRVAEEM- 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~----~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~- 140 (573)
+..|++++|+|+|||||||++..+ .+++..+.. ....+.+++++++|. .....++.+++....
T Consensus 33 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~ 112 (280)
T PRK13633 33 VKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPE 112 (280)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHh
Confidence 568999999999999999999843 233333211 112345677777763 222345666553211
Q ss_pred --hh----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHH
Q 008221 141 --DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (573)
Q Consensus 141 --~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~ 206 (573)
+. .....+|.. ...++.+..+|+|+++|+.++++++.+|+++|||| +++|......+.++
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 186 (280)
T PRK13633 113 NLGIPPEEIRERVDESLKKVGMY------EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNT 186 (280)
T ss_pred hcCCCHHHHHHHHHHHHHHCCCH------hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 00 011111211 22356778899999999999999999999999999 78888999999999
Q ss_pred HHHHHHhCCCcEEEEecccccH
Q 008221 207 LKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 207 l~~l~~~~~~~~iil~SATl~~ 228 (573)
++++.+.. +.++|++||.++.
T Consensus 187 l~~l~~~~-g~tillvtH~~~~ 207 (280)
T PRK13633 187 IKELNKKY-GITIILITHYMEE 207 (280)
T ss_pred HHHHHHhc-CCEEEEEecChHH
Confidence 99886543 7899999999874
No 245
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=1.8e-12 Score=130.53 Aligned_cols=151 Identities=19% Similarity=0.287 Sum_probs=103.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCc-ccccccHHHHHHHhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEM-- 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~-- 140 (573)
+..|+.++|+|+|||||||++..+ .+++..+.. ....+.++++++++. .+...++.+++....
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~ 109 (277)
T PRK13642 30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMEN 109 (277)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHH
Confidence 568999999999999999999843 233332211 112345677888774 455568888775321
Q ss_pred -hhc---ccchhceeeeeccc-ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHh
Q 008221 141 -DVT---IGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (573)
Q Consensus 141 -~~~---~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~ 213 (573)
+.. ....+......... ...++.+..+|+|+++|+.++++++.+++++|+|| +++|......++++++++.+.
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 189 (277)
T PRK13642 110 QGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK 189 (277)
T ss_pred cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 100 00001000000001 12345677899999999999999999999999999 788889999999999988664
Q ss_pred CCCcEEEEecccccHH
Q 008221 214 RPDLKLVVMSATLEAE 229 (573)
Q Consensus 214 ~~~~~iil~SATl~~~ 229 (573)
. +.++|++||.++..
T Consensus 190 ~-g~tiil~sH~~~~~ 204 (277)
T PRK13642 190 Y-QLTVLSITHDLDEA 204 (277)
T ss_pred c-CCEEEEEeCCHHHH
Confidence 3 78999999998654
No 246
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.37 E-value=2.1e-12 Score=128.77 Aligned_cols=150 Identities=18% Similarity=0.262 Sum_probs=103.0
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
.+..|+.++|+|+|||||||++..+. +++..+.. ......+.++++.+......++.+++......
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 103 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAP 103 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcc
Confidence 35689999999999999999998432 22222111 01123466777776654566888776432110
Q ss_pred -------------cccchhceeeeecccccccccccccCHHHHHHHHhccccc------CCCcEEEEeC--CCcCcccHH
Q 008221 143 -------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLL------ERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 143 -------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll------~~~~~lILDE--a~~r~~~~d 201 (573)
.....+|.. ...+..+..+|+|+++|+.++++++ .++++++||| +++|.....
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~ 177 (258)
T PRK13548 104 HGLSRAEDDALVAAALAQVDLA------HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177 (258)
T ss_pred cCCCcHHHHHHHHHHHHHcCCH------hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHH
Confidence 001111211 1235667889999999999999998 5999999999 888989999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+..+++++.+.. +..+|++||.++. ..+++
T Consensus 178 ~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d 209 (258)
T PRK13548 178 HVLRLARQLAHER-GLAVIVVLHDLNLAARYAD 209 (258)
T ss_pred HHHHHHHHHHHhc-CCEEEEEECCHHHHHHhcC
Confidence 9999999987333 6799999998753 33444
No 247
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=2e-12 Score=130.26 Aligned_cols=149 Identities=19% Similarity=0.270 Sum_probs=103.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCc-ccccccHHHHHHHhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~- 141 (573)
+..|++++|+|+|||||||++..+. +++..+.. ......++++++.+. .....++.+++.....
T Consensus 27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~ 106 (277)
T PRK13652 27 APRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPIN 106 (277)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHH
Confidence 5689999999999999999998443 23322211 111234667777763 2334677777742111
Q ss_pred --hc----------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 142 --VT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 142 --~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
.. ....+|. ....++.+..+|+|+++|+.++++++.+|+++|||| +++|......+.+++
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l 180 (277)
T PRK13652 107 LGLDEETVAHRVSSALHMLGL------EELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFL 180 (277)
T ss_pred cCCCHHHHHHHHHHHHHHCCC------hhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 00 0111111 122356678899999999999999999999999999 788888899999999
Q ss_pred HHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 208 KEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++.+.. +.++|++||.++. ..+++
T Consensus 181 ~~l~~~~-g~tvli~tH~~~~~~~~~d 206 (277)
T PRK13652 181 NDLPETY-GMTVIFSTHQLDLVPEMAD 206 (277)
T ss_pred HHHHHhc-CCEEEEEecCHHHHHHhCC
Confidence 9987643 6899999999863 34554
No 248
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.37 E-value=1.3e-12 Score=127.19 Aligned_cols=151 Identities=17% Similarity=0.256 Sum_probs=102.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh------hhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
+..|+.++|+|+|||||||++..+. +++..+... ...+.+.++++.+......++.+++....
T Consensus 28 i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~ 107 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL 107 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHH
Confidence 5789999999999999999988432 222221110 11245677777776555578877764321
Q ss_pred hhc--c-----cchhceee-eecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 141 DVT--I-----GEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 141 ~~~--~-----~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
... . ...+.... .+.-....+..+..+|+|+++|+.++++++.+|+++++|| +++|......+..+++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 187 (220)
T TIGR02982 108 ELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKL 187 (220)
T ss_pred HhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 100 0 00011000 0110122345677899999999999999999999999999 788888888999999998
Q ss_pred HHhCCCcEEEEecccccHH
Q 008221 211 LKNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~~ 229 (573)
.+.. +.++|++||.++..
T Consensus 188 ~~~~-~~tii~~sh~~~~~ 205 (220)
T TIGR02982 188 AREQ-GCTILIVTHDNRIL 205 (220)
T ss_pred HHHc-CCEEEEEeCCHHHH
Confidence 7543 78999999998643
No 249
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=1.7e-12 Score=131.13 Aligned_cols=150 Identities=21% Similarity=0.313 Sum_probs=104.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCC--C---hhhcCceEEEEecCcc-cccccHHHHHHHh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIE--T---PDRRRKMMIACTQPRR-VAAMSVSRRVAEE 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~--~---~~~~~~~~i~~t~p~~-~~~~~v~~~v~~~ 139 (573)
.+..|+.++|+|+|||||||++..+ .+++.++. . ......++++++.+.. ....++.+++...
T Consensus 28 ~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 107 (283)
T PRK13636 28 NIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG 107 (283)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhH
Confidence 3578999999999999999998843 33333321 0 1122457788887642 3345777777432
Q ss_pred h---hh----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 140 M---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 140 ~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
. +. .....+|.. ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......++
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~ 181 (283)
T PRK13636 108 AVNLKLPEDEVRKRVDNALKRTGIE------HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181 (283)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCh------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 1 10 011112211 22356778899999999999999999999999999 788889999999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++++++.+.. +.+++++||.++. ..+++
T Consensus 182 ~~l~~l~~~~-g~tillvsH~~~~~~~~~d 210 (283)
T PRK13636 182 KLLVEMQKEL-GLTIIIATHDIDIVPLYCD 210 (283)
T ss_pred HHHHHHHHhC-CCEEEEEecCHHHHHHhCC
Confidence 9999887643 6899999999864 33444
No 250
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.36 E-value=1.3e-12 Score=122.73 Aligned_cols=62 Identities=26% Similarity=0.356 Sum_probs=54.3
Q ss_pred ccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 164 LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 164 i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+..+|+|+++|+.++++++.+++++|||| +++|....+.+.+.++++. . +..+|++||..+.
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~--~~tii~~sh~~~~ 159 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K--DKTLIWITHHLTG 159 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C--CCEEEEEecCHHH
Confidence 55799999999999999999999999999 7888888888889988873 2 6789999998764
No 251
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.36 E-value=1.9e-12 Score=141.67 Aligned_cols=148 Identities=20% Similarity=0.295 Sum_probs=106.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--h-h-hcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--P-D-RRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~-~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
+..|+.++|+|+|||||||++..+. +++..+.. . . ....+.++++.+.....+++.+++.....
T Consensus 34 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 113 (510)
T PRK15439 34 LHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK 113 (510)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc
Confidence 6789999999999999999998432 22222111 0 0 11346778887776667788887753210
Q ss_pred --------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHH
Q 008221 142 --------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (573)
Q Consensus 142 --------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~ 211 (573)
......+|.. ...+..+..+|+|+++|+.++++++.+|++++||| +++|......+.++++++.
T Consensus 114 ~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 187 (510)
T PRK15439 114 RQASMQKMKQLLAALGCQ------LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL 187 (510)
T ss_pred chHHHHHHHHHHHHcCCC------ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 1112222221 22356778899999999999999999999999999 8899999999999999986
Q ss_pred HhCCCcEEEEecccccH-HHHHc
Q 008221 212 KNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 212 ~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+. +..+|++||.++. ..+++
T Consensus 188 ~~--g~tiiivtHd~~~~~~~~d 208 (510)
T PRK15439 188 AQ--GVGIVFISHKLPEIRQLAD 208 (510)
T ss_pred HC--CCEEEEEeCCHHHHHHhCC
Confidence 54 7899999998863 44554
No 252
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.36 E-value=6.4e-13 Score=123.34 Aligned_cols=153 Identities=22% Similarity=0.274 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhh---cc
Q 008221 68 WQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV---TI 144 (573)
Q Consensus 68 ~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~---~~ 144 (573)
++.|.++++.+.+|+.+++.||||||||+.+..+++.... .. .....+.++|+.. .+.+..+++...... ..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~-~~-~~~~~lii~P~~~---l~~q~~~~~~~~~~~~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQ-EG-KDARVLIIVPTRA---LAEQQFERLRKFFSNTNVRV 75 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHH-TT-SSSEEEEEESSHH---HHHHHHHHHHHHTTTTTSSE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhc-cC-CCceEEEEeeccc---cccccccccccccccccccc
Confidence 5789999999999999999999999999998877664332 11 1112333444333 334444444433322 11
Q ss_pred cchhceee-eecc--cccccccccccCHHHHHHHHhccc-ccCCCcEEEEeCCCcCcccHHHHHHHHHHHHH---hCCCc
Q 008221 145 GEEVGYSI-RFED--CSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLK---NRPDL 217 (573)
Q Consensus 145 ~~~vg~~~-~~~~--~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~---~~~~~ 217 (573)
....|... ..+. ....+..+.+.|++++.+.+.... .+.+.+++|+||+|. +..+.....+..+.. ..++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~--l~~~~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHH--LSDETFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp EEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHH--HHHTTHHHHHHHHHHHSHTTTTS
T ss_pred ccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccc--cccccHHHHHHHHHHHhcCCCCC
Confidence 11122110 0000 011246778899999999887643 356699999999996 333222223333322 22368
Q ss_pred EEEEeccccc
Q 008221 218 KLVVMSATLE 227 (573)
Q Consensus 218 ~iil~SATl~ 227 (573)
+++++|||+.
T Consensus 154 ~~i~~SAT~~ 163 (169)
T PF00270_consen 154 QIILLSATLP 163 (169)
T ss_dssp EEEEEESSST
T ss_pred cEEEEeeCCC
Confidence 9999999997
No 253
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=2e-12 Score=130.90 Aligned_cols=154 Identities=19% Similarity=0.281 Sum_probs=103.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-------hhhcCceEEEEecCc-ccccccHHHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-------PDRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-------~~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (573)
+..|+.++|+|+|||||||++..+ .+++..+.. ......+.+++++|. .....++.+++..
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~ 109 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEF 109 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHH
Confidence 578999999999999999999843 233332211 011235677888763 2334677777743
Q ss_pred hhh---h---cccchhceeeeeccc--ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 139 EMD---V---TIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 139 ~~~---~---~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
... . .....+......... ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......+.++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~ 189 (287)
T PRK13641 110 GPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFK 189 (287)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 111 0 000000000000011 12356778899999999999999999999999999 7888899999999999
Q ss_pred HHHHhCCCcEEEEecccccH-HHHHc
Q 008221 209 EVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++.+. +.++|++||.++. ..+++
T Consensus 190 ~l~~~--g~tvlivsH~~~~~~~~~d 213 (287)
T PRK13641 190 DYQKA--GHTVILVTHNMDDVAEYAD 213 (287)
T ss_pred HHHhC--CCEEEEEeCCHHHHHHhCC
Confidence 87543 7899999999863 45554
No 254
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=1.6e-12 Score=129.40 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=102.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM--- 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--- 140 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++++......++.+++....
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~ 104 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPW 104 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchh
Confidence 5789999999999999999998442 12211110 011234667777765555567777664311
Q ss_pred ----h---hcccchhceeeee-cccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 141 ----D---VTIGEEVGYSIRF-EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 141 ----~---~~~~~~vg~~~~~-~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
+ ......+...... .-....+..+..+|+|+++|+.++++++.+++++|||| .++|....+.+.+.++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l 184 (255)
T PRK11231 105 LSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184 (255)
T ss_pred hhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0 0000000000000 00112356678899999999999999999999999999 788888889999999887
Q ss_pred HHhCCCcEEEEecccccH-HHHHc
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+. +..+|++||.++. ..+++
T Consensus 185 ~~~--~~tiii~tH~~~~~~~~~d 206 (255)
T PRK11231 185 NTQ--GKTVVTVLHDLNQASRYCD 206 (255)
T ss_pred HHC--CCEEEEEECCHHHHHHhcC
Confidence 543 6899999998863 44554
No 255
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=1.3e-12 Score=132.33 Aligned_cols=154 Identities=19% Similarity=0.254 Sum_probs=103.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-------hhhcCceEEEEecCc-ccccccHHHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-------PDRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-------~~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (573)
|..|+.++|+|+|||||||++..+ .+++..+.. ....+.+++++++|. .+...++.+++..
T Consensus 29 i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~ 108 (288)
T PRK13643 29 VKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAF 108 (288)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHh
Confidence 578999999999999999999843 333333210 112345678888763 3333577777753
Q ss_pred hhh---h---cccchhceeeeeccc--ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 139 EMD---V---TIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 139 ~~~---~---~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
... . .....+......... ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......+.++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~ 188 (288)
T PRK13643 109 GPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFE 188 (288)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 211 0 000011100000011 12356778899999999999999999999999999 7888888999999999
Q ss_pred HHHHhCCCcEEEEecccccH-HHHHc
Q 008221 209 EVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++.+. +.++|++||.++. ..+++
T Consensus 189 ~l~~~--g~til~vtHd~~~~~~~~d 212 (288)
T PRK13643 189 SIHQS--GQTVVLVTHLMDDVADYAD 212 (288)
T ss_pred HHHHC--CCEEEEEecCHHHHHHhCC
Confidence 88653 7899999999863 34554
No 256
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.36 E-value=2.6e-12 Score=128.66 Aligned_cols=150 Identities=21% Similarity=0.344 Sum_probs=102.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCCh------hhcCceEEEEecCc--ccccccHHHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP------DRRRKMMIACTQPR--RVAAMSVSRRVAE 138 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~------~~~~~~~i~~t~p~--~~~~~~v~~~v~~ 138 (573)
+..|+.++|+|+|||||||++..+ .+++..+... ...+.+.++++++. .....++.+++..
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~ 113 (265)
T TIGR02769 34 IEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGE 113 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHH
Confidence 568999999999999999999833 2333222110 01235677777763 2344677776532
Q ss_pred hhh----h----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 139 EMD----V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 139 ~~~----~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
... . .....+|.. ....+..+..+|+|+++|+.++++++.++++++||| +++|......
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~~gl~-----~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~ 188 (265)
T TIGR02769 114 PLRHLTSLDESEQKARIAELLDMVGLR-----SEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAV 188 (265)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCC-----hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 110 0 001111110 012245677899999999999999999999999999 8888888899
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++++++++.+.. +.++|++||.++. ..+++
T Consensus 189 l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d 219 (265)
T TIGR02769 189 ILELLRKLQQAF-GTAYLFITHDLRLVQSFCQ 219 (265)
T ss_pred HHHHHHHHHHhc-CcEEEEEeCCHHHHHHHhc
Confidence 999999987643 6799999998863 33454
No 257
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=1.9e-12 Score=127.77 Aligned_cols=149 Identities=23% Similarity=0.348 Sum_probs=101.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM--- 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--- 140 (573)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+.... .++.+++....
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~ 104 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK 104 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc
Confidence 5689999999999999999998432 22222111 111234667777765443 46666654211
Q ss_pred h------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHH
Q 008221 141 D------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLK 212 (573)
Q Consensus 141 ~------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~ 212 (573)
+ ......+|.. ....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.+.++++.+
T Consensus 105 ~~~~~~~~~~l~~~~l~-----~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 179 (241)
T PRK14250 105 GEKNVDVEYYLSIVGLN-----KEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKN 179 (241)
T ss_pred CcHHHHHHHHHHHcCCC-----HHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 0011111211 011245677899999999999999999999999999 78888888999999998765
Q ss_pred hCCCcEEEEecccccH-HHHHc
Q 008221 213 NRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 213 ~~~~~~iil~SATl~~-~~~~~ 233 (573)
.. +..+|++||.++. ..+++
T Consensus 180 ~~-g~tii~~sH~~~~~~~~~d 200 (241)
T PRK14250 180 KM-NLTVIWITHNMEQAKRIGD 200 (241)
T ss_pred hC-CCEEEEEeccHHHHHHhCC
Confidence 43 6799999998863 34444
No 258
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.36 E-value=1.9e-12 Score=126.93 Aligned_cols=149 Identities=16% Similarity=0.213 Sum_probs=101.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hh-hcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PD-RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
+..|+.++|+|+|||||||++..+. +++.++.. .. ..+.+.++++.+......++.+++......
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 102 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAA 102 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHh
Confidence 6789999999999999999998432 22222111 00 123567778777666667888777532110
Q ss_pred ---cccchhceee-eecc-cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCC
Q 008221 143 ---TIGEEVGYSI-RFED-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (573)
Q Consensus 143 ---~~~~~vg~~~-~~~~-~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~ 215 (573)
.......... .+.. ....+..+..+|+|+++|+.++++++.+++++++|| +++|......+.++++++.+..
T Consensus 103 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~- 181 (230)
T TIGR03410 103 LPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEG- 181 (230)
T ss_pred cCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcC-
Confidence 0000000000 0000 112356677899999999999999999999999999 7888888999999999876543
Q ss_pred CcEEEEeccccc
Q 008221 216 DLKLVVMSATLE 227 (573)
Q Consensus 216 ~~~iil~SATl~ 227 (573)
+.++|++||.++
T Consensus 182 ~~tii~~sH~~~ 193 (230)
T TIGR03410 182 GMAILLVEQYLD 193 (230)
T ss_pred CcEEEEEeCCHH
Confidence 689999999885
No 259
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.36 E-value=2.7e-12 Score=122.30 Aligned_cols=127 Identities=14% Similarity=0.191 Sum_probs=90.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcC--ccCCC-----------hhhcCceEEEEecCcccccccHHHHHHHhhhhc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEG--VDIET-----------PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~--~~~~~-----------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (573)
.+..|+.++|+|+|||||||++..+.-.. ..... ....+.+.++++.+......++.+++.....
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-- 108 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK-- 108 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHH--
Confidence 36789999999999999999998553211 11000 0112234455555544444566655532110
Q ss_pred ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEE
Q 008221 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVV 221 (573)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil 221 (573)
...+|+|+++|+.++++++.+++++++|| +++|......+.++++++.+. +.++|+
T Consensus 109 --------------------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii 166 (194)
T cd03213 109 --------------------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT--GRTIIC 166 (194)
T ss_pred --------------------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEE
Confidence 01699999999999999999999999999 778888888999999987553 789999
Q ss_pred eccccc
Q 008221 222 MSATLE 227 (573)
Q Consensus 222 ~SATl~ 227 (573)
+||.++
T Consensus 167 ~sh~~~ 172 (194)
T cd03213 167 SIHQPS 172 (194)
T ss_pred EecCch
Confidence 999875
No 260
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=2.3e-12 Score=132.03 Aligned_cols=155 Identities=17% Similarity=0.260 Sum_probs=102.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-------------------hhhcCceEEEEecCc-c
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-------------------PDRRRKMMIACTQPR-R 126 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-------------------~~~~~~~~i~~t~p~-~ 126 (573)
+..|+.++|+|+|||||||++..+ .+++..+.. ....+.+.+++++|. .
T Consensus 49 i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~ 128 (320)
T PRK13631 49 FEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQ 128 (320)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhc
Confidence 578999999999999999999833 233322111 012345677888763 2
Q ss_pred cccccHHHHHHHhh---hhc---ccchhceeeeeccc--ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcC
Q 008221 127 VAAMSVSRRVAEEM---DVT---IGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHER 196 (573)
Q Consensus 127 ~~~~~v~~~v~~~~---~~~---~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r 196 (573)
+...++.+++.... +.. ....+......... ...+..+..+|+|+++|+.++++++.+++++|||| +++|
T Consensus 129 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD 208 (320)
T PRK13631 129 LFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLD 208 (320)
T ss_pred cccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCC
Confidence 32347777764311 000 00011100000011 12345677899999999999999999999999999 7888
Q ss_pred cccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHch
Q 008221 197 TLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
......++++++++... +.++|++||.++. ..+++.
T Consensus 209 ~~~~~~l~~~L~~l~~~--g~TiiivtHd~~~~~~~adr 245 (320)
T PRK13631 209 PKGEHEMMQLILDAKAN--NKTVFVITHTMEHVLEVADE 245 (320)
T ss_pred HHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCE
Confidence 89999999999987643 7899999999863 455543
No 261
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=3.2e-12 Score=122.54 Aligned_cols=131 Identities=11% Similarity=0.225 Sum_probs=93.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh--------------cCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL--------------EGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll--------------~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
+..|+.++|+|+|||||||++..+.- ++.++.. ....+.+.++++++......++.+++.....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 109 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALR 109 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhh
Confidence 67899999999999999999884321 1111111 0112345677777666666788887753221
Q ss_pred hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEE
Q 008221 142 VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKL 219 (573)
Q Consensus 142 ~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~i 219 (573)
.. .+..+..+|+|+++|+.++++++.+|++++||| +.+|......+..+++++.+.. +.++
T Consensus 110 ~~----------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~-~~t~ 172 (202)
T cd03233 110 CK----------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL-KTTT 172 (202)
T ss_pred hc----------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC-CCEE
Confidence 10 345567899999999999999999999999999 7888888999999999886643 4555
Q ss_pred EEeccc
Q 008221 220 VVMSAT 225 (573)
Q Consensus 220 il~SAT 225 (573)
++++|.
T Consensus 173 ii~~~h 178 (202)
T cd03233 173 FVSLYQ 178 (202)
T ss_pred EEEEcC
Confidence 655443
No 262
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.36 E-value=2e-12 Score=141.31 Aligned_cols=149 Identities=19% Similarity=0.269 Sum_probs=105.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--h-h-hcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--P-D-RRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~-~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
.+..|+.++|+|||||||||+++.+. +++.++.. . . ..+.+.++++.+.....+++.+++.....
T Consensus 26 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 105 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGRE 105 (501)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccc
Confidence 35689999999999999999988432 23322211 0 0 12357788887766666788887753210
Q ss_pred h-----------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 142 V-----------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 142 ~-----------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
. .....+|.. ...+..+..+|+|+++|+.++++++.+|++++||| +++|......
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 179 (501)
T PRK10762 106 FVNRFGRIDWKKMYAEADKLLARLNLR------FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES 179 (501)
T ss_pred cccccCccCHHHHHHHHHHHHHHcCCC------CCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHH
Confidence 0 001111111 12356678899999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+..+++++.+. +..+|++||.++. ..+++
T Consensus 180 l~~~l~~l~~~--~~tvii~sHd~~~~~~~~d 209 (501)
T PRK10762 180 LFRVIRELKSQ--GRGIVYISHRLKEIFEICD 209 (501)
T ss_pred HHHHHHHHHHC--CCEEEEEeCCHHHHHHhCC
Confidence 99999998543 7889999998753 44554
No 263
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=2.9e-12 Score=125.74 Aligned_cols=149 Identities=22% Similarity=0.275 Sum_probs=103.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|+.++|+|+|||||||++..+. +++.++.. ......+.++++.+..+...++.+++......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~ 102 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKL 102 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCC
Confidence 5689999999999999999998432 22222111 01124567777777666666777776432110
Q ss_pred ----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.....+|.. ...+..+..+|+|+++++.++++++.+++++|||| +.+|......+.++++++
T Consensus 103 ~~~~~~~~~~~~l~~~~l~------~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 176 (232)
T cd03300 103 PKAEIKERVAEALDLVQLE------GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRL 176 (232)
T ss_pred CHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 011112211 22355677899999999999999999999999999 778888888999999988
Q ss_pred HHhCCCcEEEEecccccH-HHHHc
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+.. +.++|++||.++. ..+++
T Consensus 177 ~~~~-~~tiii~sh~~~~~~~~~d 199 (232)
T cd03300 177 QKEL-GITFVFVTHDQEEALTMSD 199 (232)
T ss_pred HHHc-CCEEEEEeCCHHHHHHhcC
Confidence 7643 6899999998853 34443
No 264
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=2.3e-12 Score=130.04 Aligned_cols=149 Identities=21% Similarity=0.321 Sum_probs=103.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh--------------cCccCCC---hhhcCceEEEEecCc-ccccccHHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL--------------EGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll--------------~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (573)
.+..|++++|+|+|||||||++..+.= ++..+.. ......++++++.+. .+...++.+++..
T Consensus 29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~ 108 (282)
T PRK13640 29 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAF 108 (282)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHh
Confidence 357899999999999999999984431 1111111 011234677777764 4445688887752
Q ss_pred hh---hh----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHH
Q 008221 139 EM---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (573)
Q Consensus 139 ~~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~l 203 (573)
.. +. .....+|.. ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l 182 (282)
T PRK13640 109 GLENRAVPRPEMIKIVRDVLADVGML------DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQI 182 (282)
T ss_pred hHHhCCCCHHHHHHHHHHHHHHCCCh------hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 11 10 011112211 22356778899999999999999999999999999 78888999999
Q ss_pred HHHHHHHHHhCCCcEEEEecccccHHHHH
Q 008221 204 FGLLKEVLKNRPDLKLVVMSATLEAEKFQ 232 (573)
Q Consensus 204 l~~l~~l~~~~~~~~iil~SATl~~~~~~ 232 (573)
.++++++.+.. +.++|++||.++...++
T Consensus 183 ~~~l~~l~~~~-g~tvli~tH~~~~~~~~ 210 (282)
T PRK13640 183 LKLIRKLKKKN-NLTVISITHDIDEANMA 210 (282)
T ss_pred HHHHHHHHHhc-CCEEEEEecCHHHHHhC
Confidence 99999886543 68999999998643333
No 265
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=1.9e-12 Score=125.13 Aligned_cols=146 Identities=21% Similarity=0.242 Sum_probs=100.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (573)
+..| .++|+|+|||||||++..+. +++..+.. ....+.+.++++.+......++.+++......
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 101 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG 101 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC
Confidence 4568 99999999999999988432 22222111 01123466777777666667888776432110
Q ss_pred -----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 143 -----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 143 -----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
.....+|.. ...++.+..+|+|+++|+.++++++.+++++++|| +++|......+.+++++
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 175 (211)
T cd03264 102 IPSKEVKARVDEVLELVNLG------DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE 175 (211)
T ss_pred CCHHHHHHHHHHHHHHCCCH------HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 011111111 12356677899999999999999999999999999 88888999999999998
Q ss_pred HHHhCCCcEEEEecccccH-HHHHc
Q 008221 210 VLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+.+ +.++|++||.++. ..+++
T Consensus 176 ~~~---~~tii~vsH~~~~~~~~~d 197 (211)
T cd03264 176 LGE---DRIVILSTHIVEDVESLCN 197 (211)
T ss_pred HhC---CCEEEEEcCCHHHHHHhCC
Confidence 754 4789999998763 33443
No 266
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.36 E-value=2.4e-12 Score=122.80 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=94.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhc-cc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT-IG 145 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~-~~ 145 (573)
+..|+.++|+|+|||||||++..+. +++.++... ......++++.+......++.+++....... ..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~-~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~ 101 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI-AKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSA 101 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh-hhhhEEeccCCcCCCccCCHHHHHHHHHHhcccH
Confidence 5689999999999999999998432 222221111 0122445554444445567777774321110 00
Q ss_pred chhceeeee-cccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEe
Q 008221 146 EEVGYSIRF-EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (573)
Q Consensus 146 ~~vg~~~~~-~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~ 222 (573)
..+...... .-....+..+..+|+|+++++.++++++.+++++++|| +++|......+.++++...+ .+..+|++
T Consensus 102 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~ 179 (195)
T PRK13541 102 ETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN--SGGIVLLS 179 (195)
T ss_pred HHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEE
Confidence 000000000 00112345677899999999999999999999999999 77888888888888876533 27899999
Q ss_pred ccccc
Q 008221 223 SATLE 227 (573)
Q Consensus 223 SATl~ 227 (573)
||..+
T Consensus 180 sh~~~ 184 (195)
T PRK13541 180 SHLES 184 (195)
T ss_pred eCCcc
Confidence 99875
No 267
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=2.5e-12 Score=129.35 Aligned_cols=148 Identities=21% Similarity=0.316 Sum_probs=102.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-----hhhcCceEEEEecCc-ccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-----PDRRRKMMIACTQPR-RVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-----~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~ 140 (573)
|..|+.++|+|+|||||||++..+ .+++..+.. ....+.+.++++.+. .....++.+++....
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~ 104 (275)
T PRK13639 25 AEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGP 104 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHH
Confidence 578999999999999999999843 233322210 011234677787763 233457777764221
Q ss_pred h-------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 141 D-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 141 ~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
. ......+|.. ...++.+..+|+|+++++.++++++.+++++|||| +++|......+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~ 178 (275)
T PRK13639 105 LNLGLSKEEVEKRVKEALKAVGME------GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMK 178 (275)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 0 0011112211 22356677899999999999999999999999999 7888899999999
Q ss_pred HHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++++.+. +.++|++||.++. ..+++
T Consensus 179 ~l~~l~~~--~~til~vtH~~~~~~~~~d 205 (275)
T PRK13639 179 LLYDLNKE--GITIIISTHDVDLVPVYAD 205 (275)
T ss_pred HHHHHHHC--CCEEEEEecCHHHHHHhCC
Confidence 99988653 7899999999863 34444
No 268
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.35 E-value=2.7e-12 Score=119.64 Aligned_cols=125 Identities=19% Similarity=0.290 Sum_probs=85.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCC--Ch---hhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceee
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIE--TP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSI 152 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~--~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~ 152 (573)
+..|+.++|+|||||||||+++.++.+..... .. .....+.++. | . .....+|...
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~-q---------~---------~~l~~~~L~~ 78 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID-Q---------L---------QFLIDVGLGY 78 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh-H---------H---------HHHHHcCCCc
Confidence 57899999999999999999986643211110 00 0000111111 0 1 1112222210
Q ss_pred eecccccccccccccCHHHHHHHHhcccccCC--CcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 153 RFEDCSSARTVLKYLTDGMLLREAMTDPLLER--YKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 153 ~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~--~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
...+..+..+|+|+++|+.++++++.+ ++++++|| +++|......+.+.++++.+. +..+|++||.++.
T Consensus 79 -----~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~--g~tvIivSH~~~~ 151 (176)
T cd03238 79 -----LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL--GNTVILIEHNLDV 151 (176)
T ss_pred -----cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHH
Confidence 113456778999999999999999999 99999999 788888889999999988543 7899999999864
No 269
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=2.9e-12 Score=125.99 Aligned_cols=149 Identities=21% Similarity=0.307 Sum_probs=105.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+..+...++.+++......
T Consensus 22 i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 101 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKV 101 (235)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCC
Confidence 5689999999999999999998432 22222111 11134577888877766667888777532110
Q ss_pred ----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.....+|. ....++.+..+|+|+++|+.++++++.+++++++|| +++|....+.+...++++
T Consensus 102 ~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~ 175 (235)
T cd03299 102 DKKEIERKVLEIAEMLGI------DHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKI 175 (235)
T ss_pred CHHHHHHHHHHHHHHcCC------hhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 01111121 122356677899999999999999999999999999 788889999999999988
Q ss_pred HHhCCCcEEEEecccccH-HHHHc
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.... +.++|++||.++. ..+++
T Consensus 176 ~~~~-~~tili~tH~~~~~~~~~d 198 (235)
T cd03299 176 RKEF-GVTVLHVTHDFEEAWALAD 198 (235)
T ss_pred HHhc-CCEEEEEecCHHHHHHhCC
Confidence 6543 6899999998853 34443
No 270
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=2.7e-12 Score=132.32 Aligned_cols=153 Identities=19% Similarity=0.321 Sum_probs=103.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh---------------cCccCCC--hh-----hcCceEEEEecCcc--cccccH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL---------------EGVDIET--PD-----RRRKMMIACTQPRR--VAAMSV 132 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll---------------~~~~~~~--~~-----~~~~~~i~~t~p~~--~~~~~v 132 (573)
.|..|+.++|+|+|||||||++..+.- ++.++.. .. ..+.+.++++.+.. ....++
T Consensus 29 ~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv 108 (330)
T PRK15093 29 TLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERV 108 (330)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccH
Confidence 367899999999999999999884431 1111111 00 12357788887752 344566
Q ss_pred HHHHHHhhh-------------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC-
Q 008221 133 SRRVAEEMD-------------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE- 192 (573)
Q Consensus 133 ~~~v~~~~~-------------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE- 192 (573)
.+++..... ......+|... .....+..+..+|+|++||++++++++.++++||+||
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~---~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEP 185 (330)
T PRK15093 109 GRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKD---HKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEP 185 (330)
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCC---hHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 665543110 01111222210 0011246678899999999999999999999999999
Q ss_pred -CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 193 -AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 193 -a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++|......++++++++.+.. +..+|++||.++. ..+++
T Consensus 186 ts~LD~~~~~~i~~lL~~l~~~~-g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 186 TNAMEPTTQAQIFRLLTRLNQNN-NTTILLISHDLQMLSQWAD 227 (330)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCC
Confidence 7888899999999999987643 7899999999864 34554
No 271
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=3.3e-12 Score=128.16 Aligned_cols=144 Identities=22% Similarity=0.277 Sum_probs=98.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCc-ccccccHHHHHHHhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~- 141 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++++. .+...++.+++.....
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~ 111 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLEN 111 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHh
Confidence 5689999999999999999998432 33322211 112234677777764 3444455554422110
Q ss_pred ------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 142 ------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 142 ------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
..+...+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......+...+
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L 185 (269)
T PRK13648 112 HAVPYDEMHRRVSEALKQVDML------ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLV 185 (269)
T ss_pred cCCCHHHHHHHHHHHHHHcCCc------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0111122211 22345677899999999999999999999999999 788888899999999
Q ss_pred HHHHHhCCCcEEEEecccccH
Q 008221 208 KEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~~ 228 (573)
+++.+.. +.++|++||.++.
T Consensus 186 ~~~~~~~-~~tiiivtH~~~~ 205 (269)
T PRK13648 186 RKVKSEH-NITIISITHDLSE 205 (269)
T ss_pred HHHHHhc-CCEEEEEecCchH
Confidence 9876543 6799999998754
No 272
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.35 E-value=2.5e-12 Score=140.88 Aligned_cols=154 Identities=16% Similarity=0.219 Sum_probs=104.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCCh----hhcCceEEEEecCcccccccHHHHHHHhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEM-- 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~-- 140 (573)
+..|++++|+|+|||||||+++.+ .+++.++... .....+.++++.+.....+++.+++....
T Consensus 28 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 107 (510)
T PRK09700 28 VYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHL 107 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccc
Confidence 568999999999999999999843 2233222110 01234777888776666677777764311
Q ss_pred -----hh------cccchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHH
Q 008221 141 -----DV------TIGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (573)
Q Consensus 141 -----~~------~~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~ 206 (573)
+. .....+. +...+.-....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 187 (510)
T PRK09700 108 TKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187 (510)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 00 0000000 0000111122356778899999999999999999999999999 89999999999999
Q ss_pred HHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 207 LKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 207 l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++++.+. +..+|++||.++. ..+++
T Consensus 188 l~~l~~~--g~tiiivsHd~~~~~~~~d 213 (510)
T PRK09700 188 MNQLRKE--GTAIVYISHKLAEIRRICD 213 (510)
T ss_pred HHHHHhC--CCEEEEEeCCHHHHHHhCC
Confidence 9998654 7899999998753 34444
No 273
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.35 E-value=2.6e-12 Score=128.04 Aligned_cols=154 Identities=22% Similarity=0.266 Sum_probs=101.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-h
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-V 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-~ 142 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++++......++.+++..... .
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 103 (256)
T TIGR03873 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPH 103 (256)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhh
Confidence 4689999999999999999998432 22222111 0112346677777654455677777643210 0
Q ss_pred -c--------ccchhceee-eecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 -T--------IGEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 -~--------~~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
. ....+.... .+.-....+..+..+|+|+++|+.++++++.+++++|||| +++|....+.+.++++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (256)
T TIGR03873 104 RSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183 (256)
T ss_pred hhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 0 000000000 0011122356677899999999999999999999999999 788888899999999988
Q ss_pred HHhCCCcEEEEecccccH-HHHHc
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+. +.++|++||.++. ..+++
T Consensus 184 ~~~--~~tiii~sH~~~~~~~~~d 205 (256)
T TIGR03873 184 AAT--GVTVVAALHDLNLAASYCD 205 (256)
T ss_pred Hhc--CCEEEEEeCCHHHHHHhCC
Confidence 643 6799999998863 34444
No 274
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.35 E-value=3.7e-12 Score=124.13 Aligned_cols=146 Identities=20% Similarity=0.221 Sum_probs=99.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChhhcCceEEEEecCccc--ccccHHHHHHHhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRV--AAMSVSRRVAEEMD--- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~--~~~~v~~~v~~~~~--- 141 (573)
+..|+.++|+|+|||||||++..+. +++.+.. ...+.+.++++.+... ...++.+++.....
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 5789999999999999999998432 2222110 1123466777766432 12456665532110
Q ss_pred --------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 142 --------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 142 --------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
......+|.. ...+..+..+|+|+++|+.++++++.+++++|+|| +++|......+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~ 154 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLT------ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCc------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0001111211 12345677899999999999999999999999999 7888899999999
Q ss_pred HHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
+++++.+. +.++|++||.++ ...+++
T Consensus 155 ~l~~~~~~--~~tvii~sH~~~~~~~~~d 181 (223)
T TIGR03771 155 LFIELAGA--GTAILMTTHDLAQAMATCD 181 (223)
T ss_pred HHHHHHHc--CCEEEEEeCCHHHHHHhCC
Confidence 99987643 789999999886 334443
No 275
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=2.9e-12 Score=131.72 Aligned_cols=154 Identities=20% Similarity=0.302 Sum_probs=104.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh---------------hcCccCCCh---h----hcCceEEEEecCc--ccccccH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV---------------LEGVDIETP---D----RRRKMMIACTQPR--RVAAMSV 132 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l---------------l~~~~~~~~---~----~~~~~~i~~t~p~--~~~~~~v 132 (573)
.|..|++++|+|+|||||||++..+. +++.++... . ..+.+.++++.|. ....+++
T Consensus 29 ~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v 108 (326)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTV 108 (326)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCH
Confidence 36789999999999999999987432 222222110 0 1135778888873 2344555
Q ss_pred HHHHHHhhh--------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcC
Q 008221 133 SRRVAEEMD--------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHER 196 (573)
Q Consensus 133 ~~~v~~~~~--------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r 196 (573)
.+.+..... ......+|... .....+..+..+|+|++||++++++++.+|++||+|| ..+|
T Consensus 109 ~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~---~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD 185 (326)
T PRK11022 109 GFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD---PASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALD 185 (326)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC---hHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 544432211 11122233210 0012345678899999999999999999999999999 7788
Q ss_pred cccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHch
Q 008221 197 TLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
......++++++++.+.. +..+|++||.++. ..+++.
T Consensus 186 ~~~~~~il~lL~~l~~~~-g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 186 VTIQAQIIELLLELQQKE-NMALVLITHDLALVAEAAHK 223 (326)
T ss_pred HHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 888999999999987654 7899999999864 355553
No 276
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.35 E-value=2.8e-12 Score=127.04 Aligned_cols=148 Identities=21% Similarity=0.313 Sum_probs=101.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (573)
+..|++++|+|+|||||||++..+. +++.++.. ......+.++++.+......++.+++......
T Consensus 19 i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~ 98 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKT 98 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCC
Confidence 6789999999999999999998432 22222111 01122356777766555556777766532110
Q ss_pred ----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccC-------CCcEEEEeC--CCcCcccHHHH
Q 008221 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLE-------RYKVIVLDE--AHERTLATDVL 203 (573)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~-------~~~~lILDE--a~~r~~~~d~l 203 (573)
.....+|+. ...+..+..+|+|+++|+.++++++. ++++++||| +++|......+
T Consensus 99 ~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l 172 (248)
T PRK03695 99 RTEAVASALNEVAEALGLD------DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAAL 172 (248)
T ss_pred CcHHHHHHHHHHHHHcCCH------hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHH
Confidence 011111111 12345677899999999999999986 679999999 78888889999
Q ss_pred HHHHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 204 l~~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
..+++++.+. +.++|++||.++ ...+++
T Consensus 173 ~~~L~~~~~~--~~tvi~~sH~~~~~~~~~d 201 (248)
T PRK03695 173 DRLLSELCQQ--GIAVVMSSHDLNHTLRHAD 201 (248)
T ss_pred HHHHHHHHhC--CCEEEEEecCHHHHHHhCC
Confidence 9999988643 789999999986 445554
No 277
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.35 E-value=2.3e-12 Score=121.16 Aligned_cols=156 Identities=18% Similarity=0.244 Sum_probs=109.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC----hhhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET----PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
.+..|++++++|+||+||||+++ .+.+++.++.. .....++.++|+..+.++.++|.+++.-...
T Consensus 25 ~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~ 104 (237)
T COG0410 25 EVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAY 104 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhh
Confidence 35789999999999999999998 34556666543 1234567778877778899999999853211
Q ss_pred hc---------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 142 VT---------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 142 ~~---------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.. +...+.+-.+. ....+.+-..+|+|+.|.+.++++++.+|++++||| .++-+.-...+.+.++++
T Consensus 105 ~~~~~~~~~~~~e~v~~lFP~L--ker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l 182 (237)
T COG0410 105 ARRDKEAQERDLEEVYELFPRL--KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKEL 182 (237)
T ss_pred cccccccccccHHHHHHHChhH--HHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHH
Confidence 00 00011111111 112244556799999999999999999999999999 667777788888999998
Q ss_pred HHhCCCcEEEEecccccH-HHHHchh
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQGYF 235 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~~~ 235 (573)
.+.. +.+|+++-...+. -.+++++
T Consensus 183 ~~~~-g~tIlLVEQn~~~Al~iaDr~ 207 (237)
T COG0410 183 RKEG-GMTILLVEQNARFALEIADRG 207 (237)
T ss_pred HHcC-CcEEEEEeccHHHHHHhhCEE
Confidence 7653 6799998887654 3466544
No 278
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.34 E-value=3.2e-12 Score=125.68 Aligned_cols=156 Identities=17% Similarity=0.219 Sum_probs=100.0
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEec-CcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQ-PRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~-p~~~~~~~v~~~v~~~~~- 141 (573)
.+..|+.++|+|+|||||||++..+. +++..... ......+.+++.+ +......++.+++.....
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~ 122 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAI 122 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHH
Confidence 35789999999999999999998543 12211100 0112234555544 334445677666532111
Q ss_pred --hc---ccchhceeee-ecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHh
Q 008221 142 --VT---IGEEVGYSIR-FEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (573)
Q Consensus 142 --~~---~~~~vg~~~~-~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~ 213 (573)
.. ....+..... +.-....++.+..+|+|+++++.++++++.+|+++|||| +++|......+.++++++.+.
T Consensus 123 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 202 (236)
T cd03267 123 YDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE 202 (236)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 00 0000100000 000112355677899999999999999999999999999 788989999999999988654
Q ss_pred CCCcEEEEecccccH-HHHHc
Q 008221 214 RPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 214 ~~~~~iil~SATl~~-~~~~~ 233 (573)
. +..+|++||..+. ..+++
T Consensus 203 ~-~~tiiivsH~~~~~~~~~d 222 (236)
T cd03267 203 R-GTTVLLTSHYMKDIEALAR 222 (236)
T ss_pred C-CCEEEEEecCHHHHHHhCC
Confidence 3 6799999998753 34443
No 279
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=2.5e-12 Score=119.94 Aligned_cols=59 Identities=20% Similarity=0.350 Sum_probs=52.3
Q ss_pred cCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 167 LTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 167 lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+|+|+++|+.++++++.++++++||| +++|....+.+.++++++. . +..+|++||.++.
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~--~~tii~~sh~~~~ 157 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-K--GKTVIVIAHRLST 157 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C--CCEEEEEecCHHH
Confidence 99999999999999999999999999 7888888888999988873 2 5789999998754
No 280
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.34 E-value=3.1e-12 Score=135.61 Aligned_cols=153 Identities=20% Similarity=0.340 Sum_probs=108.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhh---------------hhhcCccCCC-------hhhcCceEEEEecCccc--ccccH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQ---------------FVLEGVDIET-------PDRRRKMMIACTQPRRV--AAMSV 132 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~---------------~ll~~~~~~~-------~~~~~~~~i~~t~p~~~--~~~~v 132 (573)
.+..|++++|+|++||||||+... +++++.++.. .-+.+.+.++++.|-.. +.+++
T Consensus 31 ~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tI 110 (539)
T COG1123 31 EVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTI 110 (539)
T ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhH
Confidence 367899999999999999998762 2333332211 11235678888887532 33555
Q ss_pred HHHHHHhh--------------hhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcC
Q 008221 133 SRRVAEEM--------------DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHER 196 (573)
Q Consensus 133 ~~~v~~~~--------------~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r 196 (573)
-+.+.+.. ...+...||..... ..+..++.+|+|++||++++.+++.+|++||+|| ..+|
T Consensus 111 g~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~----~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLD 186 (539)
T COG1123 111 GDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPE----RRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALD 186 (539)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChh----hhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence 55543321 12333445543111 1145788999999999999999999999999999 5678
Q ss_pred cccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHch
Q 008221 197 TLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
......++++|+++.++. +..+|++||++.+ ..+++.
T Consensus 187 vt~q~qIL~llk~l~~e~-g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 187 VTTQAQILDLLKDLQREL-GMAVLFITHDLGVVAELADR 224 (539)
T ss_pred HHHHHHHHHHHHHHHHHc-CcEEEEEcCCHHHHHHhcCe
Confidence 888899999999998775 9999999999874 556653
No 281
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.34 E-value=3.8e-12 Score=125.25 Aligned_cols=155 Identities=19% Similarity=0.233 Sum_probs=104.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|++++|+|+|||||||++..+. +++..+.. ....+.+.++++.+......++.+++......
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~ 102 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKH 102 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCC
Confidence 6789999999999999999988443 22222111 01123567788777766667888777432110
Q ss_pred c---ccchhce-eeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCC
Q 008221 143 T---IGEEVGY-SIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPD 216 (573)
Q Consensus 143 ~---~~~~vg~-~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~ 216 (573)
. ....+.. ..++.-....+..+..+|+|+++++.++++++.+++++++|| .++|....+.+.++++++.+.. +
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~-~ 181 (237)
T TIGR00968 103 PKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV-H 181 (237)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-C
Confidence 0 0000000 000111112345667899999999999999999999999999 7888888899999999876542 6
Q ss_pred cEEEEecccccH-HHHHc
Q 008221 217 LKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 217 ~~iil~SATl~~-~~~~~ 233 (573)
.++|+.||..+. ..+++
T Consensus 182 ~tvli~sH~~~~~~~~~d 199 (237)
T TIGR00968 182 VTTVFVTHDQEEAMEVAD 199 (237)
T ss_pred CEEEEEeCCHHHHHhhcC
Confidence 899999998763 44444
No 282
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.34 E-value=3.5e-12 Score=131.24 Aligned_cols=154 Identities=20% Similarity=0.288 Sum_probs=104.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh--------------hcCccCCC--hh-----hcCceEEEEecCc--ccccccHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV--------------LEGVDIET--PD-----RRRKMMIACTQPR--RVAAMSVS 133 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l--------------l~~~~~~~--~~-----~~~~~~i~~t~p~--~~~~~~v~ 133 (573)
.|..|++++|+|+|||||||++..+. +++.++.. .. +.+.+.++++.|. ....+++.
T Consensus 38 ~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~ 117 (330)
T PRK09473 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVG 117 (330)
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHH
Confidence 35789999999999999999988433 12222111 00 1235788888873 33445666
Q ss_pred HHHHHhhh--------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCc
Q 008221 134 RRVAEEMD--------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERT 197 (573)
Q Consensus 134 ~~v~~~~~--------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~ 197 (573)
+++..... ......+|... .....+..+..+|+|++||++++++++.++++||+|| .++|.
T Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~---~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~ 194 (330)
T PRK09473 118 EQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE---ARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDV 194 (330)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC---hHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCH
Confidence 55532211 01112222210 0011245678899999999999999999999999999 78888
Q ss_pred ccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHch
Q 008221 198 LATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 198 ~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
.....++++++++.+.. +..+|++||.++. ..+++.
T Consensus 195 ~~~~~i~~lL~~l~~~~-g~til~iTHdl~~~~~~~Dr 231 (330)
T PRK09473 195 TVQAQIMTLLNELKREF-NTAIIMITHDLGVVAGICDK 231 (330)
T ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhCCE
Confidence 99999999999987754 7899999999874 345543
No 283
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.34 E-value=4.2e-12 Score=121.55 Aligned_cols=126 Identities=21% Similarity=0.317 Sum_probs=87.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhc-------------CccCCC--h-hh-cCceEEEEecCcccccccHHHHHHHh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLE-------------GVDIET--P-DR-RRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~-------------~~~~~~--~-~~-~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.+..|+.++|+|+|||||||++..+.-. +.++.. . .. ...+.++++.+......++.+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l--- 98 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL--- 98 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHH---
Confidence 3578999999999999999999854321 111000 0 00 11244444444333323332222
Q ss_pred hhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCc
Q 008221 140 MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDL 217 (573)
Q Consensus 140 ~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~ 217 (573)
......+|+|+++|+.++++++.+++++++|| +++|....+.+.++++++.+. +.
T Consensus 99 ---------------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~--~~ 155 (200)
T cd03217 99 ---------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE--GK 155 (200)
T ss_pred ---------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC--CC
Confidence 11224699999999999999999999999999 788888899999999987543 67
Q ss_pred EEEEecccccH
Q 008221 218 KLVVMSATLEA 228 (573)
Q Consensus 218 ~iil~SATl~~ 228 (573)
++|++||.++.
T Consensus 156 tiii~sh~~~~ 166 (200)
T cd03217 156 SVLIITHYQRL 166 (200)
T ss_pred EEEEEecCHHH
Confidence 99999998763
No 284
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.33 E-value=4.3e-12 Score=117.35 Aligned_cols=125 Identities=18% Similarity=0.284 Sum_probs=84.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeeccc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC 157 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~ 157 (573)
+..|+.++|.|+|||||||++..+. +..... .+. +... ...+......+.. ...++|...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~--G~~~~~----~G~-v~~~-g~~~~~~~~~~~~--------~~~i~~~~q---- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILS--GLYKPD----SGE-ILVD-GKEVSFASPRDAR--------RAGIAMVYQ---- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHh--CCCCCC----CeE-EEEC-CEECCcCCHHHHH--------hcCeEEEEe----
Confidence 6789999999999999999998653 221111 111 1111 1111111111110 112333211
Q ss_pred ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 158 SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 158 ~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
+|+|+++|+.++++++.+++++++|| +++|......+.++++++.+. +..+|++||..+ ...+++
T Consensus 83 ---------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~~~~~~~~d 150 (163)
T cd03216 83 ---------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ--GVAVIFISHRLDEVFEIAD 150 (163)
T ss_pred ---------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999 788888899999999988543 789999999875 344443
No 285
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=3.7e-12 Score=127.95 Aligned_cols=148 Identities=16% Similarity=0.277 Sum_probs=98.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCC--C---hhhcCceEEEEecCcc-cccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIE--T---PDRRRKMMIACTQPRR-VAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~--~---~~~~~~~~i~~t~p~~-~~~~~v~~~v~~~~ 140 (573)
+..|+.++|+|+|||||||++..+ .+++.++. . ....+.+.++++.+.. ....++.+++....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~ 103 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSL 103 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHH
Confidence 568999999999999999999843 23332221 0 0112346677776542 22234444443210
Q ss_pred ---hh----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 141 ---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 141 ---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
+. .....+|.. ...+..+..+|+|+++|+.++++++.+|++++||| +++|......+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~ 177 (271)
T PRK13638 104 RNLGVPEAEITRRVDEALTLVDAQ------HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIA 177 (271)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCH------hHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00 011111211 12345677899999999999999999999999999 7888899999999
Q ss_pred HHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++++.+. +..+|++||.++. ..+++
T Consensus 178 ~l~~~~~~--g~tii~vtH~~~~~~~~~d 204 (271)
T PRK13638 178 IIRRIVAQ--GNHVIISSHDIDLIYEISD 204 (271)
T ss_pred HHHHHHHC--CCEEEEEeCCHHHHHHhCC
Confidence 99998653 6789999998863 34444
No 286
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.33 E-value=8e-12 Score=115.90 Aligned_cols=123 Identities=18% Similarity=0.225 Sum_probs=87.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeee
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIR 153 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~ 153 (573)
.+..|+.++|+|+|||||||++..+.-....... ....+.+.++++.+. ....++.+++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~-~~~~tv~~nl~~~-------------- 87 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPY-LPLGTLREQLIYP-------------- 87 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCc-cccccHHHHhhcc--------------
Confidence 3578999999999999999999864321111000 001134556665554 2344666655321
Q ss_pred ecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 154 FEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 154 ~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
....+|+|+++|+.++++++.+++++++|| +++|......+.++++++ +..+|++||..+.
T Consensus 88 ---------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~ 150 (166)
T cd03223 88 ---------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSL 150 (166)
T ss_pred ---------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhH
Confidence 245699999999999999999999999999 788888888888877764 4789999998753
No 287
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.33 E-value=3.7e-12 Score=131.47 Aligned_cols=149 Identities=18% Similarity=0.324 Sum_probs=114.9
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCC--C--hhhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIE--T--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~--~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
.+..|++.++.|+||+||||++. ++.+++.... + .....+++++.+....+..+++++++.-...
T Consensus 26 ~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e 105 (501)
T COG3845 26 SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLE 105 (501)
T ss_pred eecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCc
Confidence 36789999999999999999987 3344444322 1 1233568899999999999999999854322
Q ss_pred h----------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHH
Q 008221 142 V----------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (573)
Q Consensus 142 ~----------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~l 203 (573)
. .+...+|+. ...+..+..+|-|+.||+.+-+++..++++||||| +.+-+...+.+
T Consensus 106 ~~~~~~~~~~~~~~~i~~l~~~yGl~------vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~l 179 (501)
T COG3845 106 PSKGGLIDRRQARARIKELSERYGLP------VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADEL 179 (501)
T ss_pred cccccccCHHHHHHHHHHHHHHhCCC------CCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1 122233332 34466788899999999999999999999999999 78888899999
Q ss_pred HHHHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 204 l~~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
+..++.+.+. +..+|++||-++ +..+++
T Consensus 180 f~~l~~l~~~--G~tIi~ITHKL~Ev~~iaD 208 (501)
T COG3845 180 FEILRRLAAE--GKTIIFITHKLKEVMAIAD 208 (501)
T ss_pred HHHHHHHHHC--CCEEEEEeccHHHHHHhhC
Confidence 9999998776 899999999985 345554
No 288
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=4.2e-12 Score=128.78 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=100.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC--------hhhcCceEEEEecCc-ccccccHHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET--------PDRRRKMMIACTQPR-RVAAMSVSRRVA 137 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~--------~~~~~~~~i~~t~p~-~~~~~~v~~~v~ 137 (573)
+..|++++|+|+|||||||++..+ .+++.++.. ....+.+.++++.+. .....++.+++.
T Consensus 34 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~ 113 (289)
T PRK13645 34 FKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIA 113 (289)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHH
Confidence 568999999999999999999843 223322110 011234667777663 122246666654
Q ss_pred Hhhh---hc---ccchhceeeeeccc--ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 138 EEMD---VT---IGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 138 ~~~~---~~---~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
.... .. ....+......... ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......+++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 193 (289)
T PRK13645 114 FGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLF 193 (289)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 2110 00 00001000000111 12345677899999999999999999999999999 788999999999999
Q ss_pred HHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 208 KEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++.+.. +..+|++||.++. ..+++
T Consensus 194 ~~~~~~~-~~tiiiisH~~~~~~~~~d 219 (289)
T PRK13645 194 ERLNKEY-KKRIIMVTHNMDQVLRIAD 219 (289)
T ss_pred HHHHHhc-CCEEEEEecCHHHHHHhCC
Confidence 9887643 6899999998863 34444
No 289
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.32 E-value=4.6e-12 Score=126.96 Aligned_cols=144 Identities=21% Similarity=0.300 Sum_probs=96.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC--h-hhcCceEEEEecCc--ccccccHHHHHHHhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET--P-DRRRKMMIACTQPR--RVAAMSVSRRVAEEMD 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~--~-~~~~~~~i~~t~p~--~~~~~~v~~~v~~~~~ 141 (573)
+..|+.++|+|+|||||||++..+ .+++..+.. . ...+.+.++++++. .....++.+.+.....
T Consensus 36 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 115 (267)
T PRK15112 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLR 115 (267)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHH
Confidence 568999999999999999999843 233322211 0 11234667777663 2223344444421100
Q ss_pred --------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 142 --------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 142 --------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
......+|.. ....+..+..+|+|+++++.++++++.+++++|||| +++|......+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 190 (267)
T PRK15112 116 LNTDLEPEQREKQIIETLRQVGLL-----PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN 190 (267)
T ss_pred hccCCCHHHHHHHHHHHHHHcCCC-----hHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHH
Confidence 0111122210 011244567899999999999999999999999999 7888888889999
Q ss_pred HHHHHHHhCCCcEEEEeccccc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~ 227 (573)
+++++.+.. +..+|++||.++
T Consensus 191 ~l~~~~~~~-g~tviivsH~~~ 211 (267)
T PRK15112 191 LMLELQEKQ-GISYIYVTQHLG 211 (267)
T ss_pred HHHHHHHHc-CcEEEEEeCCHH
Confidence 999986643 678999999875
No 290
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.32 E-value=4.9e-12 Score=124.97 Aligned_cols=150 Identities=15% Similarity=0.208 Sum_probs=97.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhc-------------CccCCC--h-h-hcCceEEEEecCcccccccHHHHHHHh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLE-------------GVDIET--P-D-RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~-------------~~~~~~--~-~-~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.+..|+.++|+|+|||||||++..+.-. +.++.. . . ....+.++++.+......++.+++...
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~ 101 (243)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSA 101 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHH
Confidence 3578999999999999999998854311 111100 0 0 112255667777666666676665322
Q ss_pred hhhcc-------------cchhceeeeecccc--ccccccc-ccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 140 MDVTI-------------GEEVGYSIRFEDCS--SARTVLK-YLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 140 ~~~~~-------------~~~vg~~~~~~~~~--~~~~~i~-~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
..... ...+.......... ..+..+. .+|+|+++|+.++++++.+++++|||| +++|.....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 181 (243)
T TIGR01978 102 LNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALK 181 (243)
T ss_pred HHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 11000 00011000000111 1234454 499999999999999999999999999 889999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
.+..+++++.+. +..+|++||.++.
T Consensus 182 ~l~~~l~~~~~~--~~tvi~vsH~~~~ 206 (243)
T TIGR01978 182 IVAEGINRLREP--DRSFLIITHYQRL 206 (243)
T ss_pred HHHHHHHHHHHC--CcEEEEEEecHHH
Confidence 999999988643 6799999998753
No 291
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.32 E-value=3.4e-12 Score=128.28 Aligned_cols=149 Identities=17% Similarity=0.200 Sum_probs=95.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChhhcCceEEEEecCcccc--cccHHHHHHHh----
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVA--AMSVSRRVAEE---- 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~--~~~v~~~v~~~---- 139 (573)
.+..|+.++|+|+|||||||++..+. +++..+........+.++++++.... ...+.+.+...
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~ 108 (272)
T PRK15056 29 TVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGH 108 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccc
Confidence 35689999999999999999998442 22211110001123566666653211 11222222100
Q ss_pred -------------hhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 140 -------------MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 140 -------------~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
........+|.. ...++.+..+|+|+++|+.++++++.+|+++++|| +++|......+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~ 182 (272)
T PRK15056 109 MGWLRRAKKRDRQIVTAALARVDMV------EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARII 182 (272)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCh------hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 000011112211 12356677899999999999999999999999999 888889999999
Q ss_pred HHHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
++++++.+. +..+|++||.++ ...+++
T Consensus 183 ~~L~~~~~~--g~tviivsH~~~~~~~~~d 210 (272)
T PRK15056 183 SLLRELRDE--GKTMLVSTHNLGSVTEFCD 210 (272)
T ss_pred HHHHHHHhC--CCEEEEEeCCHHHHHHhCC
Confidence 999988643 688999999875 334443
No 292
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=3.8e-12 Score=128.48 Aligned_cols=149 Identities=23% Similarity=0.290 Sum_probs=100.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-------hhhcCceEEEEecCc-ccccccHHHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-------PDRRRKMMIACTQPR-RVAAMSVSRRVAE 138 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-------~~~~~~~~i~~t~p~-~~~~~~v~~~v~~ 138 (573)
+..|++++|+|+|||||||++..+ .+++.++.. ......+.++++.+. .+...++.+++..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~ 109 (280)
T PRK13649 30 IEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAF 109 (280)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHH
Confidence 568999999999999999998843 233322211 011234667777752 2223577777642
Q ss_pred hhh---hc----------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHH
Q 008221 139 EMD---VT----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (573)
Q Consensus 139 ~~~---~~----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~l 203 (573)
... .. ....+|.. ....+..+..+|+|+++|+.++++++.+++++|||| +++|......+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 184 (280)
T PRK13649 110 GPQNFGVSQEEAEALAREKLALVGIS-----ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKEL 184 (280)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCC-----hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 110 00 00111211 011355677899999999999999999999999999 88898999999
Q ss_pred HHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 204 FGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 204 l~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.++++++.+. +..+|++||.++. ..+++
T Consensus 185 ~~~l~~~~~~--~~tiiivsH~~~~~~~~~d 213 (280)
T PRK13649 185 MTLFKKLHQS--GMTIVLVTHLMDDVANYAD 213 (280)
T ss_pred HHHHHHHHHC--CCEEEEEeccHHHHHHhCC
Confidence 9999988643 6899999998753 34444
No 293
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=5.2e-12 Score=138.23 Aligned_cols=154 Identities=18% Similarity=0.270 Sum_probs=105.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh-------------cCccCCCh----hhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL-------------EGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll-------------~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
+..|+.++|+|+|||||||+++.+.- ++..+... ...+.+.++++++.....+++.+++....
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 107 (506)
T PRK13549 28 VRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGN 107 (506)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcc
Confidence 56899999999999999999984421 11111100 01245778888876666678888774321
Q ss_pred hh------c---ccchhc-eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 141 DV------T---IGEEVG-YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 141 ~~------~---~~~~vg-~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
.. . ....+. +...+.-....+..+..+|+|+++|+.++++++.+|+++|||| +++|......+.++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 187 (506)
T PRK13549 108 EITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIR 187 (506)
T ss_pred cccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 10 0 000000 0000111122356778899999999999999999999999999 8899999999999999
Q ss_pred HHHHhCCCcEEEEecccccH-HHHHc
Q 008221 209 EVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++.+. +..+|++||.++. ..+++
T Consensus 188 ~l~~~--~~tvi~~tH~~~~~~~~~d 211 (506)
T PRK13549 188 DLKAH--GIACIYISHKLNEVKAISD 211 (506)
T ss_pred HHHHC--CCEEEEEeCcHHHHHHhcC
Confidence 98543 7899999998853 44554
No 294
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.31 E-value=5.9e-12 Score=124.81 Aligned_cols=149 Identities=18% Similarity=0.216 Sum_probs=97.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC---hhhcCceEEEEecCccccc--ccHHHHHHHhhh------hcccc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIET---PDRRRKMMIACTQPRRVAA--MSVSRRVAEEMD------VTIGE 146 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~--~~v~~~v~~~~~------~~~~~ 146 (573)
+..|+.++|+|+|||||||++..+.-....... ......+.++++.+..... .++.+.+....+ .....
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 106 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALK 106 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHH
Confidence 578999999999999999999865311111000 0012346667766543322 233333321100 01111
Q ss_pred hhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecc
Q 008221 147 EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSA 224 (573)
Q Consensus 147 ~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SA 224 (573)
.+|.. ...+..+..+|+|+++|+.++++++.++++++||| +++|......+.++++++.+.. +.++|++||
T Consensus 107 ~~gl~------~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tiiivsH 179 (251)
T PRK09544 107 RVQAG------HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRREL-DCAVLMVSH 179 (251)
T ss_pred HcCCh------HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEec
Confidence 22211 12345677899999999999999999999999999 7888888899999999886643 679999999
Q ss_pred cccH-HHHHc
Q 008221 225 TLEA-EKFQG 233 (573)
Q Consensus 225 Tl~~-~~~~~ 233 (573)
.++. ..+++
T Consensus 180 ~~~~i~~~~d 189 (251)
T PRK09544 180 DLHLVMAKTD 189 (251)
T ss_pred CHHHHHHhCC
Confidence 8863 34444
No 295
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.31 E-value=4e-12 Score=117.64 Aligned_cols=162 Identities=17% Similarity=0.297 Sum_probs=115.4
Q ss_pred CCCChHHHHHHHHH----HhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCCh---hhcCceEEEEecCc
Q 008221 64 SLPVWQQKEEFLQV----LKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIETP---DRRRKMMIACTQPR 125 (573)
Q Consensus 64 ~lp~~~~q~~~i~~----i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~~---~~~~~~~i~~t~p~ 125 (573)
+.+-++.++.++.- |.+|+++.|+|.||+||||++. ++.+++.++.+. .+...+.-+++.|.
T Consensus 11 f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~ 90 (263)
T COG1101 11 FFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPL 90 (263)
T ss_pred ecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchh
Confidence 45556666666654 5789999999999999999998 455666665431 11122334556665
Q ss_pred c--cccccHHHHHH--Hhhhhcccchh---------------ceeeeecccccccccccccCHHHHHHHHhcccccCCCc
Q 008221 126 R--VAAMSVSRRVA--EEMDVTIGEEV---------------GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYK 186 (573)
Q Consensus 126 ~--~~~~~v~~~v~--~~~~~~~~~~v---------------g~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~ 186 (573)
. ...+++.++++ ..++..-|... +....++ ....+++..+|+|++|-+.+..+.+..|+
T Consensus 91 ~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLe--nrL~~~iglLSGGQRQalsL~MAtl~~pk 168 (263)
T COG1101 91 AGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE--NRLSDRIGLLSGGQRQALSLLMATLHPPK 168 (263)
T ss_pred hCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchh--hhhcChhhhccchHHHHHHHHHHhcCCCc
Confidence 3 35688888874 22322111111 0111111 23467888999999999999999999999
Q ss_pred EEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 187 VIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 187 ~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+++||| |.+|+-...+++++-.++..+. +++.++++|.|..
T Consensus 169 iLLLDEHTAALDPkta~~vm~lT~kiV~~~-klTtlMVTHnm~~ 211 (263)
T COG1101 169 ILLLDEHTAALDPKTAEFVMELTAKIVEEH-KLTTLMVTHNMED 211 (263)
T ss_pred EEEecchhhcCCcchHHHHHHHHHHHHHhc-CCceEEEeccHHH
Confidence 999999 8899999999999999999886 8999999999854
No 296
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.31 E-value=5.5e-12 Score=137.54 Aligned_cols=154 Identities=14% Similarity=0.210 Sum_probs=104.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh----hhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++.....
T Consensus 21 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 100 (491)
T PRK10982 21 VRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP 100 (491)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccc
Confidence 5689999999999999999998432 233222110 012357788887766667788887753210
Q ss_pred h-cc-------cchhceee-eecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 142 V-TI-------GEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 142 ~-~~-------~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
. .. ...+.... .+.-....+..+..+|+|+++|+.++++++.+|+++|||| +++|......+.++++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 180 (491)
T PRK10982 101 TKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKL 180 (491)
T ss_pred ccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 0 00 00000000 0000112356678899999999999999999999999999 888989999999999998
Q ss_pred HHhCCCcEEEEecccccH-HHHHc
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+. +..+|++||.++. ..+++
T Consensus 181 ~~~--g~tvii~tH~~~~~~~~~d 202 (491)
T PRK10982 181 KER--GCGIVYISHKMEEIFQLCD 202 (491)
T ss_pred HhC--CCEEEEEecCHHHHHHhCC
Confidence 543 7899999998853 34443
No 297
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.31 E-value=7.2e-12 Score=124.62 Aligned_cols=146 Identities=21% Similarity=0.295 Sum_probs=96.9
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCcc-----CCC--hh-----hcCceEEEEecCcc--ccccc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVD-----IET--PD-----RRRKMMIACTQPRR--VAAMS 131 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~-----~~~--~~-----~~~~~~i~~t~p~~--~~~~~ 131 (573)
.+..|+.++|+|+|||||||++..+ .+++.. +.. .. ..+.+.++++.+.. ....+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 104 (253)
T TIGR02323 25 DLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVS 104 (253)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCcccc
Confidence 3578999999999999999998832 233321 111 00 01346677776632 12234
Q ss_pred HHHHHHHhh---h-----------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCc
Q 008221 132 VSRRVAEEM---D-----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHE 195 (573)
Q Consensus 132 v~~~v~~~~---~-----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~ 195 (573)
+.+++.... . ......+|.. ....+..+..+|+|+++|+.++++++.+|++++||| +++
T Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-----~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~L 179 (253)
T TIGR02323 105 AGANIGERLMAIGARHYGNIRAAAHDWLEEVEID-----PTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL 179 (253)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCC-----hhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence 444442211 0 0001111110 012345677899999999999999999999999999 789
Q ss_pred CcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 196 r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
|......++++++++.+.. +..+|++||.++.
T Consensus 180 D~~~~~~l~~~l~~~~~~~-~~tii~vsH~~~~ 211 (253)
T TIGR02323 180 DVSVQARLLDLLRGLVRDL-GLAVIIVTHDLGV 211 (253)
T ss_pred CHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH
Confidence 9899999999999876543 6899999998753
No 298
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=1.5e-12 Score=124.73 Aligned_cols=149 Identities=19% Similarity=0.255 Sum_probs=112.8
Q ss_pred cCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-------hhhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
...++++.|++||||||+++.+ .+++.-+.. +...+.++++++.-+.++.++|..++...+-
T Consensus 23 ~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~ 102 (352)
T COG4148 23 ARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW 102 (352)
T ss_pred CCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhc
Confidence 3479999999999999999833 222221110 2234578899999999999999998865443
Q ss_pred hc-------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHH
Q 008221 142 VT-------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLK 212 (573)
Q Consensus 142 ~~-------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~ 212 (573)
.. +....|.. ...+..+..+|+|.+||+.+.++++..|+++++|| +.+|..-...++..++++.+
T Consensus 103 ~~~~~~fd~iv~lLGI~------hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~ 176 (352)
T COG4148 103 KSMRAQFDQLVALLGIE------HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD 176 (352)
T ss_pred ccchHhHHHHHHHhCcH------HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHH
Confidence 22 11222221 23367788899999999999999999999999999 77888889999999999988
Q ss_pred hCCCcEEEEeccccc-HHHHHchh
Q 008221 213 NRPDLKLVVMSATLE-AEKFQGYF 235 (573)
Q Consensus 213 ~~~~~~iil~SATl~-~~~~~~~~ 235 (573)
+. +.-++.+||.++ ...++++.
T Consensus 177 e~-~IPIlYVSHS~~Ev~RLAd~v 199 (352)
T COG4148 177 EI-NIPILYVSHSLDEVLRLADRV 199 (352)
T ss_pred hc-CCCEEEEecCHHHHHhhhheE
Confidence 76 899999999995 45666643
No 299
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.30 E-value=5.5e-12 Score=123.34 Aligned_cols=152 Identities=20% Similarity=0.317 Sum_probs=98.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhc----------------CccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLE----------------GVDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~----------------~~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.-. +..+.. ....+.+.++++.+... ..++.+++
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l 101 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNV 101 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHH
Confidence 568999999999999999998843211 111100 00123466777776655 67888776
Q ss_pred HHhhhhc-------ccchhceeeeeccc-cccccc--ccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 137 AEEMDVT-------IGEEVGYSIRFEDC-SSARTV--LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 137 ~~~~~~~-------~~~~vg~~~~~~~~-~~~~~~--i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
....... ....+......... ...+.. +..+|+|+++|+.++++++.+++++|+|| +++|......+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 181 (227)
T cd03260 102 AYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIE 181 (227)
T ss_pred HhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 4321100 00001000000011 111233 47899999999999999999999999999 788888899999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++++++.+. ..+|++||.++. ..+++
T Consensus 182 ~~l~~~~~~---~tii~~sH~~~~~~~~~d 208 (227)
T cd03260 182 ELIAELKKE---YTIVIVTHNMQQAARVAD 208 (227)
T ss_pred HHHHHHhhC---cEEEEEeccHHHHHHhCC
Confidence 999987543 689999998753 33443
No 300
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.30 E-value=5.4e-12 Score=141.08 Aligned_cols=156 Identities=21% Similarity=0.283 Sum_probs=106.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh------hhcCceEEEEecCc--ccccccHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPR--RVAAMSVSRRVA 137 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~--~~~~~~v~~~v~ 137 (573)
.+..|++++|+|+|||||||++..+. +++.++... ...+.+.++++.+. ....+++.+++.
T Consensus 346 ~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~ 425 (623)
T PRK10261 346 DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIM 425 (623)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHH
Confidence 35789999999999999999998442 333222110 01235778888763 445567877775
Q ss_pred Hhhhhc-------ccchhceeeeeccc--ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHH
Q 008221 138 EEMDVT-------IGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (573)
Q Consensus 138 ~~~~~~-------~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~ 206 (573)
...... ....+......... ...+..+..+|+|++||+.++++++.++++||+|| +++|......++++
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~l 505 (623)
T PRK10261 426 EPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINL 505 (623)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 422100 00011100000111 12356788999999999999999999999999999 88999999999999
Q ss_pred HHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 207 LKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 207 l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++++.+.. +..+|++||.++. ..+++
T Consensus 506 l~~l~~~~-g~tvi~isHdl~~v~~~~d 532 (623)
T PRK10261 506 LLDLQRDF-GIAYLFISHDMAVVERISH 532 (623)
T ss_pred HHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 99987654 7899999999863 34444
No 301
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.30 E-value=2.6e-12 Score=124.97 Aligned_cols=147 Identities=20% Similarity=0.266 Sum_probs=95.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++.+.... .++.+++......
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~ 105 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPLA 105 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCCC
Confidence 5789999999999999999998443 11211100 011234667777665443 5777766421100
Q ss_pred ------cccchhceeeeeccc-----ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 143 ------TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 143 ------~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
.....++.....+.. ......+..+|+|+++|+.++++++.+++++|||| +++|......+.+++++
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 185 (220)
T cd03245 106 DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQ 185 (220)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 011111211000000 00122346899999999999999999999999999 88999999999999998
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
+.+ +..+|++||.++.
T Consensus 186 ~~~---~~tii~~sH~~~~ 201 (220)
T cd03245 186 LLG---DKTLIIITHRPSL 201 (220)
T ss_pred hcC---CCEEEEEeCCHHH
Confidence 743 3689999999864
No 302
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.30 E-value=5.6e-12 Score=129.70 Aligned_cols=141 Identities=23% Similarity=0.284 Sum_probs=99.9
Q ss_pred EEcCCCCchhhhhhhhh-----------hcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh-----------
Q 008221 86 LVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV----------- 142 (573)
Q Consensus 86 i~G~tGSGKTT~l~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~----------- 142 (573)
|+|+|||||||+++.+. +++..+.. ....+.+.++++.+.....+++.+++......
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 47999999999998432 33322211 11234577888887777778898887643210
Q ss_pred --cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcE
Q 008221 143 --TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLK 218 (573)
Q Consensus 143 --~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~ 218 (573)
.....+|.. ...+..+..+|+|+++|+.++++++.++++++||| +++|......+.+.++++.+.. +.+
T Consensus 81 ~~~~l~~~~l~------~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~t 153 (325)
T TIGR01187 81 VLEALRLVQLE------EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL-GIT 153 (325)
T ss_pred HHHHHHHcCCc------chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCE
Confidence 011111211 22356678899999999999999999999999999 7888888999999999887653 789
Q ss_pred EEEecccccH-HHHHc
Q 008221 219 LVVMSATLEA-EKFQG 233 (573)
Q Consensus 219 iil~SATl~~-~~~~~ 233 (573)
+|++||.++. ..+++
T Consensus 154 iiivTHd~~e~~~~~d 169 (325)
T TIGR01187 154 FVFVTHDQEEAMTMSD 169 (325)
T ss_pred EEEEeCCHHHHHHhCC
Confidence 9999998853 34444
No 303
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.30 E-value=7.8e-12 Score=136.66 Aligned_cols=149 Identities=22% Similarity=0.279 Sum_probs=104.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh----hhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
.+..|+.++|+|+|||||||++..+. +++.++... ...+.+.++++.+......++.+++.....
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 105 (501)
T PRK11288 26 DCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQL 105 (501)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhccc
Confidence 35789999999999999999998432 222221110 112457788887766666788887753210
Q ss_pred -h---------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHH
Q 008221 142 -V---------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (573)
Q Consensus 142 -~---------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~l 203 (573)
. .....+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 179 (501)
T PRK11288 106 PHKGGIVNRRLLNYEAREQLEHLGVD------IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQL 179 (501)
T ss_pred ccccCCCCHHHHHHHHHHHHHHcCCC------CCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHH
Confidence 0 001111111 12355677899999999999999999999999999 88999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 204 FGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 204 l~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.++++++.+. +..+|++||.++. ..+++
T Consensus 180 ~~~l~~~~~~--g~tiiiitHd~~~~~~~~d 208 (501)
T PRK11288 180 FRVIRELRAE--GRVILYVSHRMEEIFALCD 208 (501)
T ss_pred HHHHHHHHhC--CCEEEEEeCCHHHHHHhCC
Confidence 9999988543 7899999998753 33443
No 304
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.29 E-value=5.2e-12 Score=118.98 Aligned_cols=155 Identities=15% Similarity=0.235 Sum_probs=108.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChhhcCceEEEEecCcccccccHHHHHHH---hhhhc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE---EMDVT 143 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~---~~~~~ 143 (573)
+..|++.++.|+||+||||.|+.++ +++..+. ......++++|-.--...-+++.+.+.. -.+..
T Consensus 25 v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~-~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~ 103 (300)
T COG4152 25 VPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS-QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMP 103 (300)
T ss_pred ecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchh-hhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCc
Confidence 5689999999999999999998554 1222111 1112345666655445666777666532 21211
Q ss_pred ---ccchhce-eeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCc
Q 008221 144 ---IGEEVGY-SIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDL 217 (573)
Q Consensus 144 ---~~~~vg~-~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~ 217 (573)
+.....+ ..+++-......+|..+|-|..|++-+-.+++++|+++|||| .++|+.+...+-+.+.++... +.
T Consensus 104 ~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~--Ga 181 (300)
T COG4152 104 KAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE--GA 181 (300)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhc--CC
Confidence 1111111 112333344567888999999999998888999999999999 889999999999999998765 89
Q ss_pred EEEEecccc-cHHHHHchh
Q 008221 218 KLVVMSATL-EAEKFQGYF 235 (573)
Q Consensus 218 ~iil~SATl-~~~~~~~~~ 235 (573)
++|+.||-| +++.+|+.+
T Consensus 182 tIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 182 TIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred EEEEecchHHHHHHHhhhh
Confidence 999999999 478888754
No 305
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.29 E-value=3.1e-12 Score=103.25 Aligned_cols=71 Identities=37% Similarity=0.456 Sum_probs=67.8
Q ss_pred CeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeee
Q 008221 312 PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP 391 (573)
Q Consensus 312 ~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p 391 (573)
++.+..+||+++..+|..+++.|..+. .+|+++|++++.|+|+|++++||.++. |
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~-------~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~ 65 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGK-------IKVLVATDVAERGLDLPGVDLVIIYDL------------------P 65 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCC-------CeEEEECChhhCCcChhcCCEEEEeCC------------------C
Confidence 788999999999999999999999887 799999999999999999999999998 9
Q ss_pred ccHhhHHHhccccCCC
Q 008221 392 ISKASAHQRSGRAGRT 407 (573)
Q Consensus 392 ~s~~~~~qR~GRaGR~ 407 (573)
.+...|.||+||+||.
T Consensus 66 ~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 66 WSPASYIQRIGRAGRA 81 (82)
T ss_pred CCHHHHHHhhcccccC
Confidence 9999999999999995
No 306
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.29 E-value=1.1e-11 Score=123.62 Aligned_cols=151 Identities=21% Similarity=0.295 Sum_probs=100.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCcc-----CCC--h-h----hcCceEEEEecCcc--cccccH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVD-----IET--P-D----RRRKMMIACTQPRR--VAAMSV 132 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~-----~~~--~-~----~~~~~~i~~t~p~~--~~~~~v 132 (573)
+..|+.++|.|+|||||||++..+ .+++.+ +.. . . ....+.++++++.. ....++
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~ 108 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSA 108 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccH
Confidence 678999999999999999999843 233322 111 0 0 12346777877642 223344
Q ss_pred HHHHHHhh---h-----------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcC
Q 008221 133 SRRVAEEM---D-----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHER 196 (573)
Q Consensus 133 ~~~v~~~~---~-----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r 196 (573)
.+++.... . ......+|.. ....+..+..+|+|+++|+.++++++.+|+++|||| +++|
T Consensus 109 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD 183 (258)
T PRK11701 109 GGNIGERLMAVGARHYGDIRATAGDWLERVEID-----AARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183 (258)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCC-----hhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 44443211 0 0001111110 012346678899999999999999999999999999 7888
Q ss_pred cccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHch
Q 008221 197 TLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
......+.+.++++.+.. +..+|++||.++. ..+++.
T Consensus 184 ~~~~~~l~~~l~~~~~~~-~~tii~isH~~~~~~~~~d~ 221 (258)
T PRK11701 184 VSVQARLLDLLRGLVREL-GLAVVIVTHDLAVARLLAHR 221 (258)
T ss_pred HHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhcCE
Confidence 888888999998876643 6899999998864 335543
No 307
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=6.6e-12 Score=122.92 Aligned_cols=148 Identities=18% Similarity=0.263 Sum_probs=96.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
.+..|+.++|+|+|||||||++..+. +++..+.. ......+.++++.+.... .++.+++......
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~~~~~~~~ 103 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFS-GTIMENIRLGRPN 103 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhh-hHHHHHHhccCCC
Confidence 35789999999999999999998442 22211110 011234667776665444 3666666432110
Q ss_pred ----cc---cchhceeeeecc-----cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 143 ----TI---GEEVGYSIRFED-----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 143 ----~~---~~~vg~~~~~~~-----~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
.+ ...++.....+. .......+..+|+|+++|+.++++++.++++++||| +++|....+.+.++++
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 183 (229)
T cd03254 104 ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE 183 (229)
T ss_pred CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 00 011111100000 011234467899999999999999999999999999 7888888888999998
Q ss_pred HHHHhCCCcEEEEecccccH
Q 008221 209 EVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~ 228 (573)
++. . +.++|++||..+.
T Consensus 184 ~~~-~--~~tii~~sh~~~~ 200 (229)
T cd03254 184 KLM-K--GRTSIIIAHRLST 200 (229)
T ss_pred Hhc-C--CCEEEEEecCHHH
Confidence 873 2 6899999998754
No 308
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.29 E-value=1.2e-11 Score=120.65 Aligned_cols=155 Identities=21% Similarity=0.286 Sum_probs=101.9
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hc--Cc--cCCC--hh-----hcCceEEEEecCcccccccHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LE--GV--DIET--PD-----RRRKMMIACTQPRRVAAMSVSR 134 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~--~~--~~~~--~~-----~~~~~~i~~t~p~~~~~~~v~~ 134 (573)
.+..|+.++|+|+|||||||++..+. ++ +. ++.. .. ..+.+.++++.+......++.+
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 109 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALE 109 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHH
Confidence 35789999999999999999998432 22 10 1100 00 1234677888776666667776
Q ss_pred HHHHhh---hh---cccchhc-eeeeecccc-cccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 135 RVAEEM---DV---TIGEEVG-YSIRFEDCS-SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 135 ~v~~~~---~~---~~~~~vg-~~~~~~~~~-~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
++.... +. .....+. ....+.-.. ..+..+..+|+|+++++.++++++.+++++|+|| +++|......+.
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~ 189 (224)
T TIGR02324 110 VVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVV 189 (224)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 664311 10 0000000 000000001 1244677899999999999999999999999999 788888899999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+.++++... +.++|++||..+. ..+++
T Consensus 190 ~~l~~~~~~--g~tii~vsH~~~~~~~~~d 217 (224)
T TIGR02324 190 ELIAEAKAR--GAALIGIFHDEEVRELVAD 217 (224)
T ss_pred HHHHHHHhc--CCEEEEEeCCHHHHHHhcc
Confidence 999988543 7899999998653 33444
No 309
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.29 E-value=1e-11 Score=130.72 Aligned_cols=151 Identities=19% Similarity=0.277 Sum_probs=113.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC----hhhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET----PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
.+..|++++++|+||+||||+++ .+.+++..... .....++.++.|.....+.++|++|+.-...
T Consensus 30 ~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre 109 (500)
T COG1129 30 TVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGRE 109 (500)
T ss_pred EEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccc
Confidence 46789999999999999999998 34455544321 1123457777888888899999999843221
Q ss_pred hc-----------------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 142 VT-----------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 142 ~~-----------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
.. ....+|.. ...++.+..+|.|++|.+.+++++..+.++||||| +.+.....+.
T Consensus 110 ~~~~~g~id~~~m~~~A~~~l~~lg~~------~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~ 183 (500)
T COG1129 110 PTRRFGLIDRKAMRRRARELLARLGLD------IDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETER 183 (500)
T ss_pred cccCCCccCHHHHHHHHHHHHHHcCCC------CChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 11 11112211 22567788999999999999999999999999999 7777788999
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccc-HHHHHchh
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGYF 235 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~-~~~~~~~~ 235 (573)
++++++++... +..+|++||-++ ...+++.+
T Consensus 184 Lf~~ir~Lk~~--Gv~ii~ISHrl~Ei~~i~Dri 215 (500)
T COG1129 184 LFDLIRRLKAQ--GVAIIYISHRLDEVFEIADRI 215 (500)
T ss_pred HHHHHHHHHhC--CCEEEEEcCcHHHHHHhcCEE
Confidence 99999999766 899999999985 45566543
No 310
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.29 E-value=6.8e-12 Score=123.51 Aligned_cols=147 Identities=16% Similarity=0.244 Sum_probs=97.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-h
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-V 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-~ 142 (573)
+..|+.++|+|+|||||||++..+. +++.++.. ....+.+.++++.+... ..++.+++..... .
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~~ 103 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NRSIRDNIALADPGM 103 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cchHHHHhhccCCCC
Confidence 5689999999999999999988432 22222111 01123466777766443 3577777643111 0
Q ss_pred ---cc---cchhceeeeecc-----cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 143 ---TI---GEEVGYSIRFED-----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 143 ---~~---~~~vg~~~~~~~-----~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
.+ ....+....... ....+..+..+|+|+++++.++++++.++++++||| +++|......+.+.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 183 (237)
T cd03252 104 SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHD 183 (237)
T ss_pred CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 00 000111100000 011234677899999999999999999999999999 78888889999999988
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
+. . +.++|++||.++.
T Consensus 184 ~~-~--~~tiii~sH~~~~ 199 (237)
T cd03252 184 IC-A--GRTVIIIAHRLST 199 (237)
T ss_pred hc-C--CCEEEEEeCCHHH
Confidence 74 2 6789999998864
No 311
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1e-11 Score=138.81 Aligned_cols=153 Identities=18% Similarity=0.286 Sum_probs=106.0
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccC----------C--Ch----h-hcCceEEEEecC--cc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDI----------E--TP----D-RRRKMMIACTQP--RR 126 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~----------~--~~----~-~~~~~~i~~t~p--~~ 126 (573)
.+..|++++|+|+|||||||+++.+. +++..+ . .. . ....++++++.| ..
T Consensus 38 ~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l 117 (623)
T PRK10261 38 SLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSL 117 (623)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhc
Confidence 35689999999999999999998432 222110 0 00 0 113577888887 33
Q ss_pred cccccHHHHHHHhhhh--------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC
Q 008221 127 VAAMSVSRRVAEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE 192 (573)
Q Consensus 127 ~~~~~v~~~v~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE 192 (573)
...+++.+++...... .....+|... .....+..+..+|+|++||++++++++.++++|||||
T Consensus 118 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDE 194 (623)
T PRK10261 118 NPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPE---AQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADE 194 (623)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC---hhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 4557888877542110 0111222210 0012356788899999999999999999999999999
Q ss_pred --CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 193 --AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 193 --a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++|......++++++++.+.. +..+|++||.++. ..+++
T Consensus 195 Pt~~LD~~~~~~l~~ll~~l~~~~-g~tvi~itHdl~~~~~~ad 237 (623)
T PRK10261 195 PTTALDVTIQAQILQLIKVLQKEM-SMGVIFITHDMGVVAEIAD 237 (623)
T ss_pred CCCccCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCC
Confidence 8899999999999999987643 7899999999853 45554
No 312
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.28 E-value=6.9e-12 Score=120.79 Aligned_cols=140 Identities=24% Similarity=0.320 Sum_probs=96.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhhc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (573)
+..|+.++|.|+|||||||++..+. +++..+.. ......+.++++.+.... .++.+++.......
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~~~~ 109 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFDEYS 109 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccCCCC
Confidence 5689999999999999999998442 22221110 011245677777775544 47777764211100
Q ss_pred ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEE
Q 008221 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVV 221 (573)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil 221 (573)
. ..+-.. ...+..+..+|+|+++|+.++++++.+++++|+|| +++|....+.+.++++++. .+..+|+
T Consensus 110 ~-~~~~~~------l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tiii 179 (207)
T cd03369 110 D-EEIYGA------LRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF---TNSTILT 179 (207)
T ss_pred H-HHHHHH------hhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc---CCCEEEE
Confidence 0 000000 01245677899999999999999999999999999 7788888888888888862 2689999
Q ss_pred ecccccH
Q 008221 222 MSATLEA 228 (573)
Q Consensus 222 ~SATl~~ 228 (573)
+||.++.
T Consensus 180 ~th~~~~ 186 (207)
T cd03369 180 IAHRLRT 186 (207)
T ss_pred EeCCHHH
Confidence 9998764
No 313
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.28 E-value=1.4e-11 Score=123.53 Aligned_cols=151 Identities=21% Similarity=0.271 Sum_probs=99.9
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh------hhcCceEEEEecCc--ccccccHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP------DRRRKMMIACTQPR--RVAAMSVSRRVA 137 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~------~~~~~~~i~~t~p~--~~~~~~v~~~v~ 137 (573)
.+..|+.++|+|+|||||||++..+. +++..+... ...+.+.++++.+. .....++.+.+.
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~ 113 (268)
T PRK10419 34 SLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIR 113 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHH
Confidence 35789999999999999999998432 222221110 01234667777663 223355555542
Q ss_pred Hhh----h----------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 138 EEM----D----------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 138 ~~~----~----------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
... . ......+|+. ....+..+..+|+|+++|+.++++++.++++++||| +++|.....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~ 188 (268)
T PRK10419 114 EPLRHLLSLDKAERLARASEMLRAVDLD-----DSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQA 188 (268)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHcCCC-----hhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHH
Confidence 110 0 0111112211 012245677899999999999999999999999999 788888888
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+.++++++.+.. +.++|++||..+. ..+++
T Consensus 189 ~~~~~l~~~~~~~-~~tiiivsH~~~~i~~~~d 220 (268)
T PRK10419 189 GVIRLLKKLQQQF-GTACLFITHDLRLVERFCQ 220 (268)
T ss_pred HHHHHHHHHHHHc-CcEEEEEECCHHHHHHhCC
Confidence 9999999886643 6899999998753 34554
No 314
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.28 E-value=8.1e-12 Score=122.03 Aligned_cols=148 Identities=20% Similarity=0.256 Sum_probs=96.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
.+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++++.... .++.+++.....
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~ 114 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQS 114 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCC
Confidence 35789999999999999999998432 22221110 011234667777664433 466666642110
Q ss_pred hcc---c---chhcee---eee--cccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 142 VTI---G---EEVGYS---IRF--EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 142 ~~~---~---~~vg~~---~~~--~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
... . ...+.. ..+ .-....+..+..+|+|+++|+.++++++.+|+++|||| +++|....+.+.++++
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 194 (226)
T cd03248 115 CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALY 194 (226)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 000 0 000000 000 00112345577899999999999999999999999999 7888899999999998
Q ss_pred HHHHhCCCcEEEEecccccH
Q 008221 209 EVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~ 228 (573)
++.+ +.++|++||.++.
T Consensus 195 ~~~~---~~tii~~sh~~~~ 211 (226)
T cd03248 195 DWPE---RRTVLVIAHRLST 211 (226)
T ss_pred HHcC---CCEEEEEECCHHH
Confidence 8743 4789999998754
No 315
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.28 E-value=9.1e-12 Score=132.04 Aligned_cols=152 Identities=24% Similarity=0.339 Sum_probs=109.9
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccC--CC---hhhcCceEEEEecCccc--ccccHHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDI--ET---PDRRRKMMIACTQPRRV--AAMSVSRRVAE 138 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~--~~---~~~~~~~~i~~t~p~~~--~~~~v~~~v~~ 138 (573)
.+..|+.++|+|++||||||+.+. +.+++.+. .. ...++.+.++++.|-.. ..+++.+.+++
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~e 392 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAE 392 (539)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHh
Confidence 367899999999999999998873 33444331 10 11234567788877532 44566666554
Q ss_pred hhhh--------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 139 EMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 139 ~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
.... .+...||.. ....+.++..+|+|++||+.+++++..+|++||+|| ..+|......
T Consensus 393 pL~~~~~~~~~~~~~rv~~ll~~VgL~-----~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~ 467 (539)
T COG1123 393 PLRIHGGGSGAERRARVAELLELVGLP-----PEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQ 467 (539)
T ss_pred HHhhhcccchHHHHHHHHHHHHHcCCC-----HHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHH
Confidence 3321 112334433 113467888999999999999999999999999999 6788888999
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccH-HHHHch
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
++++++++.++. +...+++||++.. +.+++.
T Consensus 468 VlnLl~~lq~e~-g~t~lfISHDl~vV~~i~dr 499 (539)
T COG1123 468 VLNLLKDLQEEL-GLTYLFISHDLAVVRYIADR 499 (539)
T ss_pred HHHHHHHHHHHh-CCEEEEEeCCHHHHHhhCce
Confidence 999999998876 8999999999974 455543
No 316
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.27 E-value=8.3e-12 Score=138.99 Aligned_cols=152 Identities=21% Similarity=0.326 Sum_probs=101.3
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
.|..|+.++|+|++||||||+++ .+.+++.++.. ...++.++++++++. +..-++.++++.....
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~-Lf~gSI~eNi~l~~p~ 573 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF-LFSGSIRENIALGNPE 573 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccch-hhcCcHHHHHhcCCCC
Confidence 46789999999999999999988 34566655433 234456666666654 4456788887532211
Q ss_pred -------cccchhceeeeeccccc-ccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 143 -------TIGEEVGYSIRFEDCSS-ARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 143 -------~~~~~vg~~~~~~~~~~-~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
......|...-...... .++.+ ..+|+|++||++++|+++.+|+++|||| +++|......+.+.+.
T Consensus 574 ~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~ 653 (709)
T COG2274 574 ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL 653 (709)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHH
Confidence 00111111100000000 12222 2489999999999999999999999999 7888888888888888
Q ss_pred HHHHhCCCcEEEEecccccHHHHH
Q 008221 209 EVLKNRPDLKLVVMSATLEAEKFQ 232 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~~~~~ 232 (573)
++.. ++++|+++|-...-..+
T Consensus 654 ~~~~---~~T~I~IaHRl~ti~~a 674 (709)
T COG2274 654 QILQ---GRTVIIIAHRLSTIRSA 674 (709)
T ss_pred HHhc---CCeEEEEEccchHhhhc
Confidence 7743 57999999987644433
No 317
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.27 E-value=1.1e-11 Score=135.48 Aligned_cols=155 Identities=19% Similarity=0.272 Sum_probs=104.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh----hhcCceEEEEecCc---ccccccHHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP----DRRRKMMIACTQPR---RVAAMSVSRRVAE 138 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~----~~~~~~~i~~t~p~---~~~~~~v~~~v~~ 138 (573)
.+..|+.++|+|+|||||||++..+. +++..+... ...+.+.++++++. .....++.+++..
T Consensus 274 ~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 353 (501)
T PRK10762 274 TLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSL 353 (501)
T ss_pred EEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhh
Confidence 46789999999999999999998432 222221110 01234677887763 3455677776643
Q ss_pred hhh--h-c---------ccchhcee-eeecc-cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 139 EMD--V-T---------IGEEVGYS-IRFED-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 139 ~~~--~-~---------~~~~vg~~-~~~~~-~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
... . . ....+... ..+.- ....++.+..+|+|+++|+.++++++.+++++|||| +++|......
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~ 433 (501)
T PRK10762 354 TALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKE 433 (501)
T ss_pred hhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHH
Confidence 110 0 0 00000000 00111 012456788899999999999999999999999999 8899999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+.++++++.+. +..+|++||.++. ..+++
T Consensus 434 l~~~l~~~~~~--g~tviivtHd~~~~~~~~d 463 (501)
T PRK10762 434 IYQLINQFKAE--GLSIILVSSEMPEVLGMSD 463 (501)
T ss_pred HHHHHHHHHHC--CCEEEEEcCCHHHHHhhCC
Confidence 99999998654 7899999998853 44443
No 318
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.27 E-value=9.3e-12 Score=136.05 Aligned_cols=155 Identities=19% Similarity=0.283 Sum_probs=103.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--h--hhcCceEEEEecCc---ccccccHHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--P--DRRRKMMIACTQPR---RVAAMSVSRRVAE 138 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~--~~~~~~~i~~t~p~---~~~~~~v~~~v~~ 138 (573)
.+..|+.++|+|+|||||||+++.+. +++..+.. . .....+.++++.+. .....++.+++..
T Consensus 275 ~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~ 354 (501)
T PRK11288 275 SVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINI 354 (501)
T ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhcc
Confidence 36789999999999999999998443 22222111 0 01234566666653 4455677777642
Q ss_pred hhhhc------------ccchhc-eeeeecc-cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 139 EMDVT------------IGEEVG-YSIRFED-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 139 ~~~~~------------~~~~vg-~~~~~~~-~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
..... ....+. +...+.- ....++.+..+|+|+++|+.++++++.+++++|||| +++|......
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~ 434 (501)
T PRK11288 355 SARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE 434 (501)
T ss_pred ccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHH
Confidence 11000 000010 0001111 122467788999999999999999999999999999 8899999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+.++++++.+. +..+|++||.++. ..+++
T Consensus 435 l~~~l~~l~~~--g~tviivsHd~~~~~~~~d 464 (501)
T PRK11288 435 IYNVIYELAAQ--GVAVLFVSSDLPEVLGVAD 464 (501)
T ss_pred HHHHHHHHHhC--CCEEEEECCCHHHHHhhCC
Confidence 99999998654 7899999999853 34444
No 319
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.27 E-value=1.4e-11 Score=119.70 Aligned_cols=148 Identities=16% Similarity=0.251 Sum_probs=94.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh-------hhcCceEEEEecCcccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~-------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+..|+.++|+|+|||||||++..+. +++...... ...+.+.++++++..+ ..++.+++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~ 102 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFG 102 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhhc
Confidence 5689999999999999999998432 222221110 0123456677776544 45777766432
Q ss_pred hh------hcccchhceeeeecc-----cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH-
Q 008221 140 MD------VTIGEEVGYSIRFED-----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG- 205 (573)
Q Consensus 140 ~~------~~~~~~vg~~~~~~~-----~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~- 205 (573)
.. ......++....... ....+..+..+|+|+++|+.++++++.+++++|+|| +++|....+.++.
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~ 182 (218)
T cd03290 103 SPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQE 182 (218)
T ss_pred CcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHH
Confidence 10 011111121100000 001134567899999999999999999999999999 7788887887777
Q ss_pred -HHHHHHHhCCCcEEEEecccccH
Q 008221 206 -LLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 206 -~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+++.+.+ . +.++|++||..+.
T Consensus 183 ~ll~~~~~-~-~~tii~~sH~~~~ 204 (218)
T cd03290 183 GILKFLQD-D-KRTLVLVTHKLQY 204 (218)
T ss_pred HHHHHHhc-C-CCEEEEEeCChHH
Confidence 5555433 2 6899999998753
No 320
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.27 E-value=4.9e-12 Score=113.57 Aligned_cols=142 Identities=20% Similarity=0.253 Sum_probs=98.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCcc-----------CCC-h---------------hhcCceEEEEecCcccccc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVD-----------IET-P---------------DRRRKMMIACTQPRRVAAM 130 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~-----------~~~-~---------------~~~~~~~i~~t~p~~~~~~ 130 (573)
...|+++.|+|.+||||||.++-+-+-... +.- . ..+..+.++++.-.....+
T Consensus 29 A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHm 108 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHM 108 (256)
T ss_pred cCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHH
Confidence 468999999999999999999854332211 100 0 0011223344444444455
Q ss_pred cHHHHHHH--------------hhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CC
Q 008221 131 SVSRRVAE--------------EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AH 194 (573)
Q Consensus 131 ~v~~~v~~--------------~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~ 194 (573)
++.+++-+ +........||.. ...+.++..+|+|+.||..+++++..+|+++++|| ..
T Consensus 109 tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~------ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSA 182 (256)
T COG4598 109 TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA------EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSA 182 (256)
T ss_pred HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch------hhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCccc
Confidence 56666532 2223334455544 33456788999999999999999999999999999 66
Q ss_pred cCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 195 ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 195 ~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
+|+......+..++.+... +++.++++|-|.
T Consensus 183 LDPElVgEVLkv~~~LAeE--grTMv~VTHEM~ 213 (256)
T COG4598 183 LDPELVGEVLKVMQDLAEE--GRTMVVVTHEMG 213 (256)
T ss_pred CCHHHHHHHHHHHHHHHHh--CCeEEEEeeehh
Confidence 7888888899999998877 899999999885
No 321
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.27 E-value=1.2e-11 Score=135.75 Aligned_cols=155 Identities=16% Similarity=0.242 Sum_probs=105.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hc-Ccc---CCCh------hhcCceEEEEecCcccccccHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LE-GVD---IETP------DRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~-~~~---~~~~------~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
.+..|++++|+|+|||||||++..+. ++ +.. +... ...+.+.++++.+.....+++.++
T Consensus 306 ~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~ 385 (520)
T TIGR03269 306 EVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDN 385 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHH
Confidence 36789999999999999999998432 21 110 0000 012346777877765666788888
Q ss_pred HHHhhhh------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 136 VAEEMDV------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 136 v~~~~~~------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
+...... .....+|.... ......+..+..+|+|+++|+.++++++.+++++|||| +++|.....
T Consensus 386 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~ 464 (520)
T TIGR03269 386 LTEAIGLELPDELARMKAVITLKMVGFDEE-KAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKV 464 (520)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCCCc-cchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 7532110 01111221100 00002356788999999999999999999999999999 889999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+.++++++.+.. +..+|++||.++. ..+++
T Consensus 465 ~l~~~l~~l~~~~-g~tvi~vsHd~~~~~~~~d 496 (520)
T TIGR03269 465 DVTHSILKAREEM-EQTFIIVSHDMDFVLDVCD 496 (520)
T ss_pred HHHHHHHHHHHHc-CcEEEEEeCCHHHHHHhCC
Confidence 9999999886653 6899999999863 34443
No 322
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.27 E-value=2.2e-11 Score=113.53 Aligned_cols=117 Identities=22% Similarity=0.224 Sum_probs=82.3
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeecc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED 156 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~ 156 (573)
.+..|+.++|+|+|||||||+++.+. +..... ...+.... . .+++... .
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~p~-----~G~i~~~g-~---------------------~i~~~~q--~ 69 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILA--GQLIPN-----GDNDEWDG-I---------------------TPVYKPQ--Y 69 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHH--cCCCCC-----CcEEEECC-E---------------------EEEEEcc--c
Confidence 66899999999999999999998643 222111 01111110 0 0122100 0
Q ss_pred cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 157 CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 157 ~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
. .+|+|+++|+.++++++.+++++++|| +++|......+.+.++++.+. .+..+|++||.++. ..+++
T Consensus 70 -------~-~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d 140 (177)
T cd03222 70 -------I-DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEE-GKKTALVVEHDLAVLDYLSD 140 (177)
T ss_pred -------C-CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHhCC
Confidence 0 199999999999999999999999999 788888888899999887654 24789999998853 33443
No 323
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=1.8e-11 Score=121.53 Aligned_cols=147 Identities=22% Similarity=0.251 Sum_probs=100.9
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhc----------C------ccCCC---hhhcCceEEEEecCcccccccHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET---PDRRRKMMIACTQPRRVAAMSVSRRVA 137 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~----------~------~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (573)
.+..|+.++|+|+|||||||++..+.-. | ..+.. ......+.++++.+......++.+++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~ 104 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVA 104 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHH
Confidence 3568999999999999999999854311 1 11110 011235677887776666678888875
Q ss_pred Hhhhh---------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 138 EEMDV---------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 138 ~~~~~---------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
..... .....+|..... ....+..+..+|+|+++|+.++++++.++++++||| +++|....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~ 182 (250)
T PRK14247 105 LGLKLNRLVKSKKELQERVRWALEKAQLWDEV--KDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENT 182 (250)
T ss_pred HHHHhccccCCHHHHHHHHHHHHHHcCCCcch--hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 32110 001111211000 012356677899999999999999999999999999 78888889
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
..+.++++++. . +.++|++||.++.
T Consensus 183 ~~l~~~l~~~~-~--~~tiii~sH~~~~ 207 (250)
T PRK14247 183 AKIESLFLELK-K--DMTIVLVTHFPQQ 207 (250)
T ss_pred HHHHHHHHHHh-c--CCEEEEEeCCHHH
Confidence 99999999873 2 5789999998763
No 324
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.26 E-value=2.2e-11 Score=121.06 Aligned_cols=150 Identities=20% Similarity=0.277 Sum_probs=100.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.- .| .++.. ......+.++++.+.... .++.+++
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 107 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENV 107 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHH
Confidence 67899999999999999999985531 11 11110 011234667777765554 4777777
Q ss_pred HHhhhhc--------------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
....... ....+|..... ....+..+..+|+|+++|+.++++++.++++++||| +++|....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~ 185 (253)
T PRK14242 108 AYGLRVNGVKDKAYLAERVERSLRHAALWDEV--KDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185 (253)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh--hHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 5321100 00111110000 011245577899999999999999999999999999 88888888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+.++++++. . +.++|++||.++. ..+++
T Consensus 186 ~~l~~~l~~~~-~--~~tvii~tH~~~~~~~~~d 216 (253)
T PRK14242 186 QKIEELIHELK-A--RYTIIIVTHNMQQAARVSD 216 (253)
T ss_pred HHHHHHHHHHh-c--CCeEEEEEecHHHHHHhCC
Confidence 99999999873 2 5789999998853 34444
No 325
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.26 E-value=6.3e-12 Score=123.81 Aligned_cols=147 Identities=18% Similarity=0.251 Sum_probs=95.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhhc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (573)
+..|+.++|+|+|||||||++..+. +++.++.. ......+.++++.+.... .++.+++.......
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~ 104 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA 104 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC
Confidence 5689999999999999999998432 22221110 011234666666654433 46766664311100
Q ss_pred -------ccchhceeeeecc-----cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 144 -------IGEEVGYSIRFED-----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 144 -------~~~~vg~~~~~~~-----~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
.....+....... ....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.+.+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 184 (238)
T cd03249 105 TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDR 184 (238)
T ss_pred CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 0000111000000 011234567899999999999999999999999999 78888889999999988
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
+. .+..+|++||.++.
T Consensus 185 ~~---~g~~vi~~sh~~~~ 200 (238)
T cd03249 185 AM---KGRTTIVIAHRLST 200 (238)
T ss_pred hc---CCCEEEEEeCCHHH
Confidence 74 27889999998754
No 326
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=7.9e-12 Score=122.81 Aligned_cols=147 Identities=19% Similarity=0.244 Sum_probs=96.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++.+.... .++.+++......
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~ 103 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGA 103 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCCC
Confidence 5689999999999999999998432 22221110 011234566666655443 5777777432110
Q ss_pred ---cc---cchhceeeee-----cccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 143 ---TI---GEEVGYSIRF-----EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 143 ---~~---~~~vg~~~~~-----~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
.. ....+..... .-....+..+..+|+|+++++.++++++.+++++|||| +++|....+.+.+.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 183 (234)
T cd03251 104 TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALER 183 (234)
T ss_pred CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 00 0001110000 00011234577899999999999999999999999999 78888888999999988
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
+. . +.++|++||.++.
T Consensus 184 ~~-~--~~tii~~sh~~~~ 199 (234)
T cd03251 184 LM-K--NRTTFVIAHRLST 199 (234)
T ss_pred hc-C--CCEEEEEecCHHH
Confidence 74 2 6789999998854
No 327
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.26 E-value=2.2e-11 Score=120.69 Aligned_cols=150 Identities=23% Similarity=0.309 Sum_probs=101.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|++++|+|+|||||||++..+.- .| ..+.. ....+.+.++++.+.... .++.+++
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l 102 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNI 102 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHH
Confidence 57899999999999999999984421 11 11110 011234677787776555 7888777
Q ss_pred HHhhhh--------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
...... .....+|..... ....+..+..+|+|+++|+.++++++.++++++||| +++|....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 180 (247)
T TIGR00972 103 AYGPRLHGIKDKKELDEIVEESLKKAALWDEV--KDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIAT 180 (247)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 532110 001111211000 012345677899999999999999999999999999 78888888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
..+.++++++.+ +..+|++||.++ ...+++
T Consensus 181 ~~l~~~l~~~~~---~~tiiivsH~~~~~~~~~d 211 (247)
T TIGR00972 181 GKIEELIQELKK---KYTIVIVTHNMQQAARISD 211 (247)
T ss_pred HHHHHHHHHHHh---cCeEEEEecCHHHHHHhCC
Confidence 899999998754 368999999886 344554
No 328
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.26 E-value=9.8e-12 Score=136.25 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=102.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--h--hhcCceEEEEecC---cccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--P--DRRRKMMIACTQP---RRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~--~~~~~~~i~~t~p---~~~~~~~v~~~v~~~ 139 (573)
+..|++++|+|+|||||||+++.+. +++..+.. . ...+.++++++.+ .....+++.+++...
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~ 365 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAIS 365 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccc
Confidence 5789999999999999999998432 22222111 0 0123466777753 234456777776431
Q ss_pred hhh---------------cccchhc-eeeeeccc-ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 140 MDV---------------TIGEEVG-YSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 140 ~~~---------------~~~~~vg-~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
... .....+. +...+.-. ...++.+..+|+|+++|+.++++++.+++++|||| +++|....
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~ 445 (510)
T PRK09700 366 RSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAK 445 (510)
T ss_pred cccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHH
Confidence 100 0000000 00011111 22456788899999999999999999999999999 88999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
..+.++++++.+. +..+|++||.++ ...+++
T Consensus 446 ~~l~~~l~~l~~~--g~tvi~vsHd~~~~~~~~d 477 (510)
T PRK09700 446 AEIYKVMRQLADD--GKVILMVSSELPEIITVCD 477 (510)
T ss_pred HHHHHHHHHHHHC--CCEEEEEcCCHHHHHhhCC
Confidence 9999999998653 789999999875 344444
No 329
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.26 E-value=2.2e-11 Score=114.53 Aligned_cols=139 Identities=21% Similarity=0.336 Sum_probs=89.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCccccccc---HHHHHHHhhhhcccchhceeeee
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMS---VSRRVAEEMDVTIGEEVGYSIRF 154 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~---v~~~v~~~~~~~~~~~vg~~~~~ 154 (573)
+..|+.++|.|+|||||||++..+. +..... .+- +.... ..+.... ....+... ......+|..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~--G~~~~~----~G~-v~~~g-~~~~~~~~~~~~~~i~~~--~q~l~~~gl~--- 88 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLA--GLLKPS----SGE-ILLDG-KDLASLSPKELARKIAYV--PQALELLGLA--- 88 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh--CCCCCC----CcE-EEECC-EECCcCCHHHHHHHHhHH--HHHHHHcCCH---
Confidence 5689999999999999999998653 221111 111 11111 0011111 11111100 0022223322
Q ss_pred cccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHH
Q 008221 155 EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKF 231 (573)
Q Consensus 155 ~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~ 231 (573)
...+..+..+|+|+.+|+.++++++.+|+++++|| +++|....+.+.++++++.+.. +.++|++||.++. ..+
T Consensus 89 ---~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~-~~tiii~sh~~~~~~~~ 164 (180)
T cd03214 89 ---HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARER-GKTVVMVLHDLNLAARY 164 (180)
T ss_pred ---hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh
Confidence 12235567899999999999999999999999999 7888888899999999886542 5799999998763 344
Q ss_pred Hc
Q 008221 232 QG 233 (573)
Q Consensus 232 ~~ 233 (573)
++
T Consensus 165 ~d 166 (180)
T cd03214 165 AD 166 (180)
T ss_pred CC
Confidence 43
No 330
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=2.4e-11 Score=121.84 Aligned_cols=151 Identities=17% Similarity=0.245 Sum_probs=100.3
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh----------------cCccCC----C-hhhcCceEEEEecCcccccccHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL----------------EGVDIE----T-PDRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll----------------~~~~~~----~-~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
.+..|+.++|+|+|||||||++..+.- ++.++. . ....+.+.++++.+..+. .++.++
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 113 (269)
T PRK14259 35 DIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYEN 113 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch-hhHHHH
Confidence 356899999999999999999985421 111110 0 011234677777775554 477777
Q ss_pred HHHhhhh------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 136 VAEEMDV------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 136 v~~~~~~------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
+...... .....++..... ....+..+..+|+|+++|+.++++++.+++++|||| +++|.....
T Consensus 114 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~ 191 (269)
T PRK14259 114 IAFGARINGYTGDMDELVERSLRKAAVWDEC--KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTL 191 (269)
T ss_pred HhhhhhhcCCcHHHHHHHHHHHHHhCCcchh--hhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 6432110 001111110000 012345677899999999999999999999999999 788888889
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
.+.++++++. . +..+|++||.++ ...+++
T Consensus 192 ~l~~~l~~~~-~--~~tiiivtH~~~~~~~~~d 221 (269)
T PRK14259 192 KIEETMHELK-K--NFTIVIVTHNMQQAVRVSD 221 (269)
T ss_pred HHHHHHHHHh-c--CCEEEEEeCCHHHHHHhcC
Confidence 9999998873 2 578999999885 344554
No 331
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.26 E-value=8.3e-12 Score=137.58 Aligned_cols=145 Identities=23% Similarity=0.303 Sum_probs=94.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhhh--
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (573)
.+..|+.++|+|++||||||++..+. +++.++.. ...++.+.+++++|..+. -++.+++.-...
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~~~~ 435 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGRPDA 435 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCccccc-ccHHHHHhccCCCC
Confidence 36789999999999999999988432 33322211 112245778888776554 478888753211
Q ss_pred -----hcccchhceeeeecccc-cccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 142 -----VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 142 -----~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
......+|...-..... ..++.+ ..+|+|++||+.++|+++.+++++|||| +++|......+.+.+++
T Consensus 436 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 436 TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11112222111001100 112322 3489999999999999999999999999 67777777777776665
Q ss_pred HHHhCCCcEEEEeccc
Q 008221 210 VLKNRPDLKLVVMSAT 225 (573)
Q Consensus 210 l~~~~~~~~iil~SAT 225 (573)
+ .++.++|++||.
T Consensus 516 ~---~~~~TvIiItHr 528 (529)
T TIGR02868 516 A---LSGKTVVVITHH 528 (529)
T ss_pred h---cCCCEEEEEecC
Confidence 4 347899999995
No 332
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.26 E-value=2.4e-11 Score=120.88 Aligned_cols=152 Identities=22% Similarity=0.335 Sum_probs=98.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhc---------------CccCCChh-hcCceEEEEecCcc-c-ccccHHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLE---------------GVDIETPD-RRRKMMIACTQPRR-V-AAMSVSRRVAE 138 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~---------------~~~~~~~~-~~~~~~i~~t~p~~-~-~~~~v~~~v~~ 138 (573)
.+..|+.++|+|+|||||||++..+.-. +.++.... ..+.+.++++++.. + ...++.+++..
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~ 104 (254)
T PRK10418 25 TLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARE 104 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHH
Confidence 3578999999999999999998854311 11110000 11346677777631 2 23444444322
Q ss_pred h---hhh--------cccchhceeeeeccc-ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 139 E---MDV--------TIGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 139 ~---~~~--------~~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
. .+. .....+|.. .. ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......+.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~ 180 (254)
T PRK10418 105 TCLALGKPADDATLTAALEAVGLE----NAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL 180 (254)
T ss_pred HHHHcCCChHHHHHHHHHHHcCCC----ChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH
Confidence 1 110 011111211 00 01245677899999999999999999999999999 788888888999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+++++.+.. +..+|++||.++. ..+++
T Consensus 181 ~~L~~~~~~~-g~til~~sH~~~~~~~~~d 209 (254)
T PRK10418 181 DLLESIVQKR-ALGMLLVTHDMGVVARLAD 209 (254)
T ss_pred HHHHHHHHhc-CcEEEEEecCHHHHHHhCC
Confidence 9999886643 6899999998754 34444
No 333
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=1.3e-11 Score=122.95 Aligned_cols=151 Identities=18% Similarity=0.275 Sum_probs=102.0
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh----------------hcCccCCC-----hhhcCceEEEEecCcccccccHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV----------------LEGVDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l----------------l~~~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
.+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++.+... ..++.++
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~en 107 (254)
T PRK14273 29 KILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF-LMSIYDN 107 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc-cCcHHHH
Confidence 36789999999999999999988432 11111110 01123567788777655 3788887
Q ss_pred HHHhhhhc-------c-------cchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCccc
Q 008221 136 VAEEMDVT-------I-------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (573)
Q Consensus 136 v~~~~~~~-------~-------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~ 199 (573)
+....... . ...+|..... ....++.+..+|+|+++|+.++++++.+++++|||| +++|...
T Consensus 108 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~ 185 (254)
T PRK14273 108 ISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV--KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIS 185 (254)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh--HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHH
Confidence 75321100 0 0111110000 012355678899999999999999999999999999 7888888
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
...+.++++++. . +..+|++||.++. ..+++
T Consensus 186 ~~~l~~~l~~~~-~--~~tvii~sH~~~~~~~~~d 217 (254)
T PRK14273 186 TGKIEELIINLK-E--SYTIIIVTHNMQQAGRISD 217 (254)
T ss_pred HHHHHHHHHHHh-c--CCEEEEEeCCHHHHHHhCC
Confidence 999999999883 2 5789999998864 34444
No 334
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.26 E-value=2.2e-11 Score=120.98 Aligned_cols=144 Identities=16% Similarity=0.215 Sum_probs=93.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhc-------C------ccCCC--hhhcC--ceEEEEecCcccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLE-------G------VDIET--PDRRR--KMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~-------~------~~~~~--~~~~~--~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
+..|+.++|+|+|||||||++..+.-. | ..+.. ..... .+.++++.+......++.+++....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~ 109 (252)
T CHL00131 30 INKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAY 109 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhh
Confidence 578999999999999999999854311 0 00000 00111 2445566655444445555443211
Q ss_pred hh--------------------cccchhceeeeeccccccccccc-ccCHHHHHHHHhcccccCCCcEEEEeC--CCcCc
Q 008221 141 DV--------------------TIGEEVGYSIRFEDCSSARTVLK-YLTDGMLLREAMTDPLLERYKVIVLDE--AHERT 197 (573)
Q Consensus 141 ~~--------------------~~~~~vg~~~~~~~~~~~~~~i~-~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~ 197 (573)
.. .....+|.. ....+..+. .+|+|+++|+.++++++.+++++|+|| +++|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 184 (252)
T CHL00131 110 NSKRKFQGLPELDPLEFLEIINEKLKLVGMD-----PSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDI 184 (252)
T ss_pred hhhhcccccccccHHHHHHHHHHHHHHcCCc-----hhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCH
Confidence 00 001111110 011234454 499999999999999999999999999 88898
Q ss_pred ccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 198 LATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 198 ~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
.....+.++++++.+. +..+|++||.++.
T Consensus 185 ~~~~~l~~~l~~~~~~--g~tii~~tH~~~~ 213 (252)
T CHL00131 185 DALKIIAEGINKLMTS--ENSIILITHYQRL 213 (252)
T ss_pred HHHHHHHHHHHHHHhC--CCEEEEEecCHHH
Confidence 9999999999988643 7899999998753
No 335
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.25 E-value=1.5e-11 Score=120.39 Aligned_cols=149 Identities=19% Similarity=0.235 Sum_probs=95.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhc---------C------ccCCChhh-cCceEEEEecCc-cc-ccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLE---------G------VDIETPDR-RRKMMIACTQPR-RV-AAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~---------~------~~~~~~~~-~~~~~i~~t~p~-~~-~~~~v~~~v~~~ 139 (573)
+..|+.++|.|+|||||||++..+.-. | .++..... .+.+.++++.+. .+ ...++.+++...
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~ 88 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIET 88 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHH
Confidence 568999999999999999999844311 1 11100001 134667777664 12 335555544221
Q ss_pred h---hhcc---cchhceeeeeccc----ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 140 M---DVTI---GEEVGYSIRFEDC----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 140 ~---~~~~---~~~vg~~~~~~~~----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
. +... ...+......... ...+..+..+|+|+++|+.++++++.++++++||| +++|......+.+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l 168 (230)
T TIGR02770 89 LRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLL 168 (230)
T ss_pred HHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH
Confidence 1 0000 0001000000011 12345677899999999999999999999999999 788888888889999
Q ss_pred HHHHHhCCCcEEEEeccccc
Q 008221 208 KEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~ 227 (573)
+++.+.. +..+|++||.++
T Consensus 169 ~~~~~~~-~~tiii~sH~~~ 187 (230)
T TIGR02770 169 RELRQLF-GTGILLITHDLG 187 (230)
T ss_pred HHHHHhc-CCEEEEEeCCHH
Confidence 9886542 679999999875
No 336
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.25 E-value=7.7e-12 Score=121.07 Aligned_cols=136 Identities=22% Similarity=0.221 Sum_probs=92.3
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeecc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED 156 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~ 156 (573)
.|.+|++++++|++||||||+-+.++--... . ...|.+. ...+..++..+ ..+.-......||..
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~p-t------~G~i~f~-g~~i~~~~~~~--~~~~v~elL~~Vgl~----- 99 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEP-T------SGEILFE-GKDITKLSKEE--RRERVLELLEKVGLP----- 99 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCC-C------CceEEEc-CcchhhcchhH--HHHHHHHHHHHhCCC-----
Confidence 3689999999999999999998755421111 1 1111111 11111111111 111122233455532
Q ss_pred cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 157 CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 157 ~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
.....+.++.+|+|++||+.++++++.+|+++|+|| +-+|......++.+++++.+.. +...+++||++..
T Consensus 100 ~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~-~lt~lFIsHDL~v 172 (268)
T COG4608 100 EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-GLTYLFISHDLSV 172 (268)
T ss_pred HHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHh-CCeEEEEEEEHHh
Confidence 123467888999999999999999999999999999 4566677788999999998876 8999999999875
No 337
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.25 E-value=1.4e-11 Score=135.53 Aligned_cols=156 Identities=20% Similarity=0.311 Sum_probs=104.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh----------hcCccCCC--hh----hcCceEEEEecCc--ccccccHHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV----------LEGVDIET--PD----RRRKMMIACTQPR--RVAAMSVSRRVAE 138 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l----------l~~~~~~~--~~----~~~~~~i~~t~p~--~~~~~~v~~~v~~ 138 (573)
.+..|++++|+|+|||||||+++.+. +++.++.. .. ....+.++++.+. .....++.+++..
T Consensus 308 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~ 387 (529)
T PRK15134 308 TLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEE 387 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHH
Confidence 46799999999999999999988432 22222111 00 1234677887762 3445678777754
Q ss_pred hhhhc---c-----cchhceeeeecccc--cccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHH
Q 008221 139 EMDVT---I-----GEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (573)
Q Consensus 139 ~~~~~---~-----~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~ 206 (573)
..... . ...+.......... ..+..+..+|+|+++|+.++++++.+|+++|||| +++|......++++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 467 (529)
T PRK15134 388 GLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILAL 467 (529)
T ss_pred HHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHH
Confidence 21100 0 00010000001111 2356778899999999999999999999999999 88999999999999
Q ss_pred HHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 207 LKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 207 l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++++.+.. +..+|++||.++. ..+++
T Consensus 468 l~~~~~~~-~~tvi~vsHd~~~~~~~~d 494 (529)
T PRK15134 468 LKSLQQKH-QLAYLFISHDLHVVRALCH 494 (529)
T ss_pred HHHHHHhh-CCEEEEEeCCHHHHHHhcC
Confidence 99987653 6899999999853 34444
No 338
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.4e-11 Score=130.14 Aligned_cols=148 Identities=24% Similarity=0.355 Sum_probs=102.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhh--
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM-- 140 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~-- 140 (573)
.+..|+.++++|++||||||++.. +.+++.+..+ ..-++.+..++++|...+ -++.+|+.-..
T Consensus 343 t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~~ 421 (559)
T COG4988 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARPD 421 (559)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCCc
Confidence 578899999999999999999873 3344443322 223456778888887654 47777773211
Q ss_pred -----hhcccchhceeeeecccccccccccc----cCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 141 -----DVTIGEEVGYSIRFEDCSSARTVLKY----LTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 141 -----~~~~~~~vg~~~~~~~~~~~~~~i~~----lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
-....+.+|...-.......++.+.. +|+|+.||+.++|+++++.+++++|| +|+|......+++.+.+
T Consensus 422 ~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~ 501 (559)
T COG4988 422 ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQE 501 (559)
T ss_pred CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHH
Confidence 12223333322111111122444443 89999999999999999999999999 89988888888888888
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
+.+ +.+++++||.+..
T Consensus 502 l~~---~ktvl~itHrl~~ 517 (559)
T COG4988 502 LAK---QKTVLVITHRLED 517 (559)
T ss_pred HHh---CCeEEEEEcChHH
Confidence 765 4699999998753
No 339
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.25 E-value=5e-11 Score=123.24 Aligned_cols=314 Identities=13% Similarity=0.081 Sum_probs=181.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccC---CC-----------hhhcCc-eEEE-
Q 008221 57 EILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI---ET-----------PDRRRK-MMIA- 120 (573)
Q Consensus 57 ~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~---~~-----------~~~~~~-~~i~- 120 (573)
+.++.+.-..-+.+|.+.|..+.+|+.+++.-.+-|||+|....-..+-... .+ ....++ .+++
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~ 356 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVE 356 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEE
Confidence 3445556667788999999999999999999999999999654211110000 00 000011 1111
Q ss_pred EecCcccccccHHHHHHHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhccc-----ccCCCcEEEEeCCCc
Q 008221 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP-----LLERYKVIVLDEAHE 195 (573)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~-----ll~~~~~lILDEa~~ 195 (573)
.-..+.-+.....+...+. ..... ...+-...+..+.+..-..++.. .+-+-.+.+.||.|.
T Consensus 357 ~I~~~K~A~V~~~D~~sE~-~~~A~------------~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~ 423 (1034)
T KOG4150|consen 357 VIKARKSAYVEMSDKLSET-TKSAL------------KRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCAL 423 (1034)
T ss_pred ehhhhhcceeecccCCCch-hHHHH------------HhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceee
Confidence 0011111111111100000 00000 00112223334444444444332 233446677888764
Q ss_pred CcccHHH--------HHHHHHHHHHhCCCcEEEEeccccc--HHHHHchhC--CCCeeeecCcccCCcccccCCCc----
Q 008221 196 RTLATDV--------LFGLLKEVLKNRPDLKLVVMSATLE--AEKFQGYFY--GAPLMKVPGRLHPVEIFYTQEPE---- 259 (573)
Q Consensus 196 r~~~~d~--------ll~~l~~l~~~~~~~~iil~SATl~--~~~~~~~~~--~~~~i~v~g~~~~v~~~y~~~~~---- 259 (573)
-...... ++++++-+-. ..+++++=.|+|+. .....+.|+ ....+++.|.+..-+++.+..|.
T Consensus 424 Y~~~~~~~~~~~~R~L~~L~~~F~~-~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~ 502 (1034)
T KOG4150|consen 424 YLFPTKALAQDQLRALSDLIKGFEA-SINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPT 502 (1034)
T ss_pred eecchhhHHHHHHHHHHHHHHHHHh-hcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCc
Confidence 3222222 2222222222 23899999999984 344555554 45667788876665655543221
Q ss_pred -----hhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCC
Q 008221 260 -----RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPA 334 (573)
Q Consensus 260 -----~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~ 334 (573)
.+++......+.++.. ..-+.|.|||.+.-++-+....++.+..-+... --.+..+.|+-..++|+++-...
T Consensus 503 ~~~~~~~~i~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~L-V~~i~SYRGGY~A~DRRKIE~~~ 579 (1034)
T KOG4150|consen 503 SKSEKSSKVVEVSHLFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREILAETAPHL-VEAITSYRGGYIAEDRRKIESDL 579 (1034)
T ss_pred chhhhhhHHHHHHHHHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHH-HHHHHhhcCccchhhHHHHHHHh
Confidence 2333333333333332 344789999999988876655544322111100 11356778999999999998887
Q ss_pred CCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeE
Q 008221 335 PPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKC 412 (573)
Q Consensus 335 ~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~ 412 (573)
-.|+ .+-|+|||..|-||||.+.+.|+.+|+ |-|.++..|..|||||- .+..+
T Consensus 580 F~G~-------L~giIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~GRAGRRNk~SLa 633 (1034)
T KOG4150|consen 580 FGGK-------LCGIIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQAGRAGRRNKPSLA 633 (1034)
T ss_pred hCCe-------eeEEEecchhhhccccccceeEEEccC------------------chhHHHHHHHhccccccCCCceE
Confidence 7777 799999999999999999999999999 99999999999999998 55543
No 340
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.25 E-value=2.7e-11 Score=121.43 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=97.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh-------------cC------ccCCC---hhhcCceEEEEecCcccccccHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL-------------EG------VDIET---PDRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll-------------~~------~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
+..|++++|+|+|||||||++..+.- .| ..+.. ....+.+.++++.+......++.++
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~ 103 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREI 103 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHH
Confidence 57899999999999999999985421 11 00000 0111234566666544445677777
Q ss_pred HHHhhhh-----------------cccchhceeeeecccccccccccccCHHHHHHHHhccccc---------CCCcEEE
Q 008221 136 VAEEMDV-----------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLL---------ERYKVIV 189 (573)
Q Consensus 136 v~~~~~~-----------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll---------~~~~~lI 189 (573)
+...... .....+|+. ...+..+..+|+|+++|+.++++++ .++++++
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lll 177 (272)
T PRK13547 104 VLLGRYPHARRAGALTHRDGEIAWQALALAGAT------ALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLL 177 (272)
T ss_pred HhhcccccccccccCCHHHHHHHHHHHHHcCcH------hhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEE
Confidence 6432100 000111111 1234567789999999999999998 5999999
Q ss_pred EeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 190 LDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 190 LDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
||| +++|......+.++++++.+.. +..+|++||.++
T Consensus 178 LDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tviiisH~~~ 216 (272)
T PRK13547 178 LDEPTAALDLAHQHRLLDTVRRLARDW-NLGVLAIVHDPN 216 (272)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHH
Confidence 999 7888899999999999886543 688999999875
No 341
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.5e-11 Score=121.78 Aligned_cols=150 Identities=20% Similarity=0.342 Sum_probs=100.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhc--------------CccCCC---hhhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLE--------------GVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~--------------~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
+..|+.++|+|+|||||||++..+.-. +.++.. ....+.+.++++++..+. .++.+++....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~ 103 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAP 103 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHH
Confidence 568999999999999999999854311 111110 111235677888776554 58877774321
Q ss_pred hh---------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHH
Q 008221 141 DV---------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (573)
Q Consensus 141 ~~---------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~l 203 (573)
.. .....+|...... ...+..+..+|+|+++|+.++++++.++++++||| +++|......+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l 181 (246)
T PRK14269 104 KLHGMIKNKDEEEALVVDCLQKVGLFEEVK--DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVI 181 (246)
T ss_pred hhcCcccChHHHHHHHHHHHHHcCCChhhh--HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 00 0111112110000 11244567899999999999999999999999999 77888888888
Q ss_pred HHHHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 204 FGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 204 l~~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
.+.++++.+ +.++|++||.++ ...+++
T Consensus 182 ~~~l~~~~~---~~tiii~tH~~~~~~~~~d 209 (246)
T PRK14269 182 EELLKELSH---NLSMIMVTHNMQQGKRVAD 209 (246)
T ss_pred HHHHHHHhC---CCEEEEEecCHHHHHhhCc
Confidence 888888742 679999999886 344554
No 342
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.25 E-value=2.3e-11 Score=133.12 Aligned_cols=155 Identities=16% Similarity=0.242 Sum_probs=103.9
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh-------------cCccCCC--h--hhcCceEEEEecCcccccccHHHHHHHh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL-------------EGVDIET--P--DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll-------------~~~~~~~--~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.+..|++++|+|+|||||||++..+.- ++..+.. . .....+.++++.+.....+++.+++...
T Consensus 23 ~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 102 (500)
T TIGR02633 23 EVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLG 102 (500)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhh
Confidence 356899999999999999999885431 1111100 0 0123477888887666667888877532
Q ss_pred hhhc-----c-----cchhceeeeeccc-cc-ccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 140 MDVT-----I-----GEEVGYSIRFEDC-SS-ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 140 ~~~~-----~-----~~~vg~~~~~~~~-~~-~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
.... . ...+......... .. .+..+..+|+|+++|+.++++++.+++++|||| +++|......+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~ 182 (500)
T TIGR02633 103 NEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD 182 (500)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 1100 0 0000000000011 11 134577899999999999999999999999999 8899999999999
Q ss_pred HHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++++.+. +..+|++||.++. ..+++
T Consensus 183 ~l~~l~~~--g~tviiitHd~~~~~~~~d 209 (500)
T TIGR02633 183 IIRDLKAH--GVACVYISHKLNEVKAVCD 209 (500)
T ss_pred HHHHHHhC--CCEEEEEeCcHHHHHHhCC
Confidence 99998643 7899999998753 44454
No 343
>PRK13409 putative ATPase RIL; Provisional
Probab=99.24 E-value=2.6e-11 Score=134.05 Aligned_cols=147 Identities=20% Similarity=0.167 Sum_probs=103.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhh---cCceEEEEecCcccccccHHHHHHHhhhh--------cccc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDR---RRKMMIACTQPRRVAAMSVSRRVAEEMDV--------TIGE 146 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~---~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--------~~~~ 146 (573)
+..|++++|+|+|||||||++..+. +........ ...+.++++.+......++.+++...... .+..
T Consensus 362 i~~Geiv~l~G~NGsGKSTLlk~L~--Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~ 439 (590)
T PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLA--GVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIK 439 (590)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHH
Confidence 6789999999999999999998654 211011000 02355667666555567787777532110 0111
Q ss_pred hhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecc
Q 008221 147 EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSA 224 (573)
Q Consensus 147 ~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SA 224 (573)
.+|. ....+..+..+|+|++||+.++++++.+++++|||| +++|......+..+++++.+.. +..+|++||
T Consensus 440 ~l~l------~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tviivsH 512 (590)
T PRK13409 440 PLQL------ERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEER-EATALVVDH 512 (590)
T ss_pred HCCC------HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeC
Confidence 1111 122466788999999999999999999999999999 8999999999999999987654 689999999
Q ss_pred cccH-HHHHc
Q 008221 225 TLEA-EKFQG 233 (573)
Q Consensus 225 Tl~~-~~~~~ 233 (573)
.++. ..+++
T Consensus 513 D~~~~~~~aD 522 (590)
T PRK13409 513 DIYMIDYISD 522 (590)
T ss_pred CHHHHHHhCC
Confidence 8753 34443
No 344
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.24 E-value=1.7e-11 Score=108.22 Aligned_cols=150 Identities=20% Similarity=0.271 Sum_probs=104.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCc-------------cCCC-------hhhcCceEEEEecCcccccccHHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGV-------------DIET-------PDRRRKMMIACTQPRRVAAMSVSRRVA 137 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~-------------~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (573)
..+|+.+++.||+|+|||++++..-+-.. +.+. ...++.++++++|-...+.+++.+++-
T Consensus 25 ~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enli 104 (242)
T COG4161 25 CPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLI 104 (242)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHH
Confidence 35799999999999999999883322111 1111 123456778888877778888888874
Q ss_pred Hhhhhccc--------chhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 138 EEMDVTIG--------EEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 138 ~~~~~~~~--------~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
+.-..-.| .....-.+..-....+..+..+|+|+.+|+.++++++.+|+++++|| |.+|+.-+..+.+++
T Consensus 105 eap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~ii 184 (242)
T COG4161 105 EAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184 (242)
T ss_pred hhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHH
Confidence 32110000 00000011111233456677899999999999999999999999999 788999999999999
Q ss_pred HHHHHhCCCcEEEEecccccHH
Q 008221 208 KEVLKNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~~~ 229 (573)
+++... +.+-++++|-.+..
T Consensus 185 kel~~t--gitqvivthev~va 204 (242)
T COG4161 185 KELAET--GITQVIVTHEVEVA 204 (242)
T ss_pred HHHHhc--CceEEEEEeehhHH
Confidence 998766 78888899988753
No 345
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=1.5e-11 Score=120.91 Aligned_cols=147 Identities=18% Similarity=0.245 Sum_probs=96.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.++++++.+... ..++.+++......
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~~ 102 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLF-NDTIGYNIRYGRPDA 102 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhh-cchHHHHHhhcCCCC
Confidence 5689999999999999999998443 22211110 01123466777666544 35777766432100
Q ss_pred ---cc---cchhceeeeeccc-----ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 143 ---TI---GEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 143 ---~~---~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
.. ....+........ ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......+..++++
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 182 (236)
T cd03253 103 TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD 182 (236)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 00 0111111000000 11233466899999999999999999999999999 78888888888888887
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
+.+ +.++|++||..+.
T Consensus 183 ~~~---~~tiii~sh~~~~ 198 (236)
T cd03253 183 VSK---GRTTIVIAHRLST 198 (236)
T ss_pred hcC---CCEEEEEcCCHHH
Confidence 743 6789999998764
No 346
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.24 E-value=3.6e-11 Score=114.12 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=60.5
Q ss_pred ccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
.+.....+|-|++++++++|+++.+|+++|||| ..+|......++..+.++....+..+++++||-.+
T Consensus 165 a~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e 234 (257)
T COG1119 165 ADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE 234 (257)
T ss_pred ccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh
Confidence 356677899999999999999999999999999 67888999999999999988777899999999653
No 347
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.24 E-value=1.3e-11 Score=134.76 Aligned_cols=149 Identities=16% Similarity=0.250 Sum_probs=96.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCccc--------ccccHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRV--------AAMSVSR 134 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~--------~~~~v~~ 134 (573)
.+..|+.++|+|+|||||||+++.+. +++..... ....+.+.++++.+... ...++.+
T Consensus 25 ~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 104 (490)
T PRK10938 25 TLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAE 104 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHH
Confidence 35789999999999999999998432 11111100 00112244555443210 0234444
Q ss_pred HHHH-----hhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 135 RVAE-----EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 135 ~v~~-----~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
.+.. .........+|.. ...+..+..+|+|+++|+.++++++.+|++++||| +++|......+.+++
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 178 (490)
T PRK10938 105 IIQDEVKDPARCEQLAQQFGIT------ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELL 178 (490)
T ss_pred hcccchhHHHHHHHHHHHcCCH------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 3311 0111112222221 22356778899999999999999999999999999 899999999999999
Q ss_pred HHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 208 KEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++.+. +..+|++||.++. ..+++
T Consensus 179 ~~~~~~--g~tvii~tH~~~~~~~~~d 203 (490)
T PRK10938 179 ASLHQS--GITLVLVLNRFDEIPDFVQ 203 (490)
T ss_pred HHHHhc--CCeEEEEeCCHHHHHhhCC
Confidence 998653 7899999998753 33443
No 348
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.24 E-value=3.5e-11 Score=132.19 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=102.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcC------cc--CC-----------------------------------C--h
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEG------VD--IE-----------------------------------T--P 111 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~------~~--~~-----------------------------------~--~ 111 (573)
.+..|+.++|+|+|||||||+++.+.-.. .. +. . .
T Consensus 22 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 101 (520)
T TIGR03269 22 TIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSD 101 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCH
Confidence 35689999999999999999988442110 00 00 0 0
Q ss_pred ----hhcCceEEEEec-CcccccccHHHHHHHhh---hh----------cccchhceeeeecccccccccccccCHHHHH
Q 008221 112 ----DRRRKMMIACTQ-PRRVAAMSVSRRVAEEM---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLL 173 (573)
Q Consensus 112 ----~~~~~~~i~~t~-p~~~~~~~v~~~v~~~~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~ 173 (573)
...+.+.++++. +......++.+++.... +. .....+|.. ...+..+..+|+|+++
T Consensus 102 ~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LSgGq~q 175 (520)
T TIGR03269 102 KLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS------HRITHIARDLSGGEKQ 175 (520)
T ss_pred HHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh------hhhhcCcccCCHHHHH
Confidence 011235666765 34445567777774321 10 011112211 1224567889999999
Q ss_pred HHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 174 REAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 174 r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
|+.++++++.+|++++||| +++|......++++++++.+.. +..+|++||.++. ..+++
T Consensus 176 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tviivtHd~~~~~~~~d 237 (520)
T TIGR03269 176 RVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKAS-GISMVLTSHWPEVIEDLSD 237 (520)
T ss_pred HHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhcC
Confidence 9999999999999999999 8999999999999999987653 6899999998863 33443
No 349
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=3e-11 Score=121.48 Aligned_cols=151 Identities=17% Similarity=0.243 Sum_probs=100.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
.+..|+.++|+|+|||||||++..+.- .| .++.. ......+.++++++..+. .++.++
T Consensus 42 ~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~n 120 (274)
T PRK14265 42 KIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYEN 120 (274)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcccc-ccHHHH
Confidence 356899999999999999999985541 11 11100 011234667777765554 377777
Q ss_pred HHHhhhh------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 136 VAEEMDV------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 136 v~~~~~~------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
+...... .....+|..... ....+..+..+|+|+++|+.++++++.+++++|||| +++|.....
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~ 198 (274)
T PRK14265 121 IAFAPRANGYKGNLDELVEDSLRRAAIWEEV--KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTR 198 (274)
T ss_pred HHhHHHhcCchHHHHHHHHHHHHHcccchhh--HHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence 6432110 001111110000 012245677899999999999999999999999999 888889999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+.++++++.+ +..+|++||.++. ..+++
T Consensus 199 ~l~~~L~~~~~---~~tiii~sH~~~~~~~~~d 228 (274)
T PRK14265 199 QVEELCLELKE---QYTIIMVTHNMQQASRVAD 228 (274)
T ss_pred HHHHHHHHHhc---CCEEEEEeCCHHHHHHhCC
Confidence 99999998743 4789999998853 34544
No 350
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=2.5e-11 Score=121.18 Aligned_cols=152 Identities=20% Similarity=0.278 Sum_probs=100.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.- .+ .++.. ....+.+.++++.+..+. .++.+++
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl 108 (261)
T PRK14258 30 IYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNV 108 (261)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHH
Confidence 67899999999999999999884321 11 11100 011234566666655444 6777776
Q ss_pred HHhhhh-------c-------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDV-------T-------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~-------~-------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
...... . ....+|..... ....+..+..+|+|+++|+.++++++.++++++||| +++|....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~ 186 (261)
T PRK14258 109 AYGVKIVGWRPKLEIDDIVESALKDADLWDEI--KHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS 186 (261)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh--hhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 432100 0 00111110000 011245667899999999999999999999999999 78888888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+...++++.... +.++|++||.++. ..+++
T Consensus 187 ~~l~~~l~~l~~~~-~~tiiivsH~~~~i~~~~d 219 (261)
T PRK14258 187 MKVESLIQSLRLRS-ELTMVIVSHNLHQVSRLSD 219 (261)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhcC
Confidence 88999999876533 7899999998853 44444
No 351
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.24 E-value=1e-11 Score=124.38 Aligned_cols=148 Identities=22% Similarity=0.298 Sum_probs=95.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhh---
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM--- 140 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--- 140 (573)
.|..|+.++|+|+|||||||++..+ .+++.++.. ...++.+.++++.|..+. .++.+++....
T Consensus 26 ~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~~~~ 104 (275)
T cd03289 26 SISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYGKWS 104 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hhHHHHhhhccCCC
Confidence 4678999999999999999998843 223322211 112345778887776554 46777663110
Q ss_pred ---hhcccchhceeeeeccccc-ccc----cccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 141 ---DVTIGEEVGYSIRFEDCSS-ART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 141 ---~~~~~~~vg~~~~~~~~~~-~~~----~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.......+|.......... .++ .-..+|+|+++++.++++++.++++++||| +++|......+.+.++++
T Consensus 105 ~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~ 184 (275)
T cd03289 105 DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA 184 (275)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 0111222332110000000 011 123499999999999999999999999999 777777777788887765
Q ss_pred HHhCCCcEEEEecccccH
Q 008221 211 LKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~ 228 (573)
. .+.++|++||.++.
T Consensus 185 ~---~~~tii~isH~~~~ 199 (275)
T cd03289 185 F---ADCTVILSEHRIEA 199 (275)
T ss_pred c---CCCEEEEEECCHHH
Confidence 2 26899999999854
No 352
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=3.9e-11 Score=119.69 Aligned_cols=150 Identities=21% Similarity=0.300 Sum_probs=101.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.- .| ..+.. ....+.+.++++.+..+. .++.+++
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 113 (258)
T PRK14268 35 IPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNV 113 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHH
Confidence 57899999999999999999985431 11 11110 011234667777766555 7888777
Q ss_pred HHhh---hh----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 137 AEEM---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 137 ~~~~---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
.... +. .....+|... ......++.+..+|+|+++|+.++++++.++++++||| +++|.....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 191 (258)
T PRK14268 114 AYGPRIHGANKKDLDGVVENALRSAALWD--ETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTA 191 (258)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCCc--chhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHH
Confidence 5321 10 0111111100 00012345677899999999999999999999999999 788889999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+..+++++. . +.++|++||.++. ..+++
T Consensus 192 ~l~~~l~~l~-~--~~tiiivsH~~~~~~~~~d 221 (258)
T PRK14268 192 RIEDLIMNLK-K--DYTIVIVTHNMQQAARISD 221 (258)
T ss_pred HHHHHHHHHh-h--CCEEEEEECCHHHHHHhCC
Confidence 9999999874 2 5799999998853 34444
No 353
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=3.3e-11 Score=119.64 Aligned_cols=150 Identities=18% Similarity=0.284 Sum_probs=100.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cCc------cCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EGV------DIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~~------~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.- .|. .+.. ....+.+.++++++.... .++.+++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl 104 (250)
T PRK14245 26 IEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENV 104 (250)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHH
Confidence 57899999999999999999986531 111 1100 011234677777765544 5777776
Q ss_pred HHhhhh--------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
...... .....+|..... ....+..+..+|+|+++|+.++++++.+++++|||| +++|....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 182 (250)
T PRK14245 105 AYGLRVNGVKDNAFIRQRVEETLKGAALWDEV--KDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIST 182 (250)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch--hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 432110 001111110000 011245677899999999999999999999999999 78888999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+.+.++++. . +.++|++||.++. ..+++
T Consensus 183 ~~l~~~l~~~~-~--~~tiiivtH~~~~~~~~~d 213 (250)
T PRK14245 183 AKVEELIHELK-K--DYTIVIVTHNMQQAARVSD 213 (250)
T ss_pred HHHHHHHHHHh-c--CCeEEEEeCCHHHHHhhCC
Confidence 99999999873 3 5789999998753 34443
No 354
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.23 E-value=3.1e-11 Score=120.41 Aligned_cols=151 Identities=17% Similarity=0.269 Sum_probs=101.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|++++|+|+|||||||++..+.- .| .++.. ....+.+.++++.+......++.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl 106 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNV 106 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHH
Confidence 56899999999999999999985431 11 11100 01123466777766656667888777
Q ss_pred HHhhhh--------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
...... .....+|..... ....+..+..+|+|+++|+.++++++.+++++|||| +++|....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 184 (258)
T PRK14241 107 VAGLKLNGVRNKKDLDELVEKSLRGANLWNEV--KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPIST 184 (258)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 532110 000111110000 012345677899999999999999999999999999 78888889
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+..+++++. . +.++|++||.++. ..+++
T Consensus 185 ~~l~~~l~~~~-~--~~tviivsH~~~~~~~~~d 215 (258)
T PRK14241 185 LAIEDLINELK-Q--DYTIVIVTHNMQQAARVSD 215 (258)
T ss_pred HHHHHHHHHHh-c--CCEEEEEecCHHHHHHhCC
Confidence 99999999874 2 4789999998753 34544
No 355
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.23 E-value=1.5e-11 Score=137.24 Aligned_cols=147 Identities=21% Similarity=0.252 Sum_probs=96.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD--- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~--- 141 (573)
+..|+.++|+|++||||||++..+ .+++.++.. ...++.+.+++++|..+. -++.+++.-...
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~~~~~ 451 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGNPDAS 451 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCCCCCC
Confidence 578999999999999999998743 233322211 122345777777776544 588888753211
Q ss_pred ----hcccchhceeeeecccc-cccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 142 ----VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 142 ----~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.......|......... ..++.+ ..+|+|++||+.++|+++.+++++|||| +++|......+.+.++++
T Consensus 452 ~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~ 531 (588)
T PRK11174 452 DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531 (588)
T ss_pred HHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 01111122111000000 012222 3499999999999999999999999999 678888887777777665
Q ss_pred HHhCCCcEEEEecccccH
Q 008221 211 LKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~ 228 (573)
. ++.++|++||.++.
T Consensus 532 ~---~~~TvIiItHrl~~ 546 (588)
T PRK11174 532 S---RRQTTLMVTHQLED 546 (588)
T ss_pred h---CCCEEEEEecChHH
Confidence 3 37899999998854
No 356
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=3.9e-11 Score=119.12 Aligned_cols=151 Identities=24% Similarity=0.303 Sum_probs=101.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
.+..|+.++|+|+|||||||++..+.- .| ..+.. ....+.+.++++++.... .++.++
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~ 103 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDN 103 (250)
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHH
Confidence 356899999999999999999985431 11 11110 011235677787776555 688877
Q ss_pred HHHhhhh---c----c-------cchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCccc
Q 008221 136 VAEEMDV---T----I-------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (573)
Q Consensus 136 v~~~~~~---~----~-------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~ 199 (573)
+...... . . ...+|..... ....+..+..+|+|+++|+.++++++.+++++++|| +++|...
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~ 181 (250)
T PRK14262 104 VAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV--KSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181 (250)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh--HHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHH
Confidence 7532110 0 0 0111111000 011345677899999999999999999999999999 7888888
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 200 TDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
...+.++++++.+ +.++|++||.++ ...+++
T Consensus 182 ~~~l~~~l~~~~~---~~tili~sH~~~~~~~~~d 213 (250)
T PRK14262 182 TQRIEKLLEELSE---NYTIVIVTHNIGQAIRIAD 213 (250)
T ss_pred HHHHHHHHHHHhc---CcEEEEEeCCHHHHHHhCC
Confidence 8999999988743 578999999876 344443
No 357
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.22 E-value=2.2e-11 Score=147.68 Aligned_cols=155 Identities=18% Similarity=0.204 Sum_probs=108.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHh---hh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEE---MD 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~---~~ 141 (573)
+..|+++++.|+|||||||+++.+. +++.++.. ....+.++++|+.+.....+++.+++... .+
T Consensus 1962 I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g 2041 (2272)
T TIGR01257 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG 2041 (2272)
T ss_pred EcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC
Confidence 5689999999999999999998432 33333211 11234577888877666678888877431 11
Q ss_pred hc---ccchhceee-eecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCC
Q 008221 142 VT---IGEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (573)
Q Consensus 142 ~~---~~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~ 215 (573)
.. ....+.... .++-....++.+..+|+|+++|+.++.+++.+|++++||| +++|+.....+.++++++.+.
T Consensus 2042 ~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-- 2119 (2272)
T TIGR01257 2042 VPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-- 2119 (2272)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 10 000010000 0111122466788999999999999999999999999999 889999999999999998654
Q ss_pred CcEEEEeccccc-HHHHHch
Q 008221 216 DLKLVVMSATLE-AEKFQGY 234 (573)
Q Consensus 216 ~~~iil~SATl~-~~~~~~~ 234 (573)
+..+|+.||.++ .+.+++.
T Consensus 2120 g~TIILtTH~mee~e~lcDr 2139 (2272)
T TIGR01257 2120 GRAVVLTSHSMEECEALCTR 2139 (2272)
T ss_pred CCEEEEEeCCHHHHHHhCCE
Confidence 789999999996 3556653
No 358
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=3.8e-11 Score=119.40 Aligned_cols=152 Identities=20% Similarity=0.254 Sum_probs=102.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh----------------cCccCC--C---hhhcCceEEEEecCcccccccHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL----------------EGVDIE--T---PDRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll----------------~~~~~~--~---~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
.+..|++++|+|+|||||||++..+.- ++.++. . ......+.++++.+......++.++
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~en 105 (253)
T PRK14267 26 KIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDN 105 (253)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHH
Confidence 367899999999999999999884421 111111 0 0112346777877776666788887
Q ss_pred HHHhhhh---------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcc
Q 008221 136 VAEEMDV---------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTL 198 (573)
Q Consensus 136 v~~~~~~---------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~ 198 (573)
+...... .....+|..... ....+..+..+|+|+++|+.++++++.+++++|+|| +++|..
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 183 (253)
T PRK14267 106 VAIGVKLNGLVKSKKELDERVEWALKKAALWDEV--KDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPV 183 (253)
T ss_pred HHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch--hhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 7532110 001111211000 012345677899999999999999999999999999 788888
Q ss_pred cHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 199 ATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 199 ~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
....+..+++++.+ +..+|++||.++. ..+++
T Consensus 184 ~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d 216 (253)
T PRK14267 184 GTAKIEELLFELKK---EYTIVLVTHSPAQAARVSD 216 (253)
T ss_pred HHHHHHHHHHHHhh---CCEEEEEECCHHHHHhhCC
Confidence 88889999988743 4789999998763 34444
No 359
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.22 E-value=2.6e-11 Score=132.70 Aligned_cols=155 Identities=15% Similarity=0.223 Sum_probs=100.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCCh--h--hcCceEEEEecCc---ccccccHHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP--D--RRRKMMIACTQPR---RVAAMSVSRRVAE 138 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~--~--~~~~~~i~~t~p~---~~~~~~v~~~v~~ 138 (573)
.+..|++++|+|+|||||||++..+. +++..+... . ....+.++++.+. .....++.+++..
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~ 364 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCA 364 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHh
Confidence 46789999999999999999998442 222211110 0 1124556665531 2334566665531
Q ss_pred h----hhh---c--ccchhcee-eeeccc-ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 139 E----MDV---T--IGEEVGYS-IRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 139 ~----~~~---~--~~~~vg~~-~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
. ... . ....+... ..+.-. ...++.+..+|+|+++|+.++++++.++++||||| +++|......+.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~ 444 (510)
T PRK15439 365 LTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ 444 (510)
T ss_pred hhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHH
Confidence 1 000 0 00000000 011111 22456788999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++++.+. +..+|++||.++. ..+++
T Consensus 445 ~l~~l~~~--g~tiIivsHd~~~i~~~~d 471 (510)
T PRK15439 445 LIRSIAAQ--NVAVLFISSDLEEIEQMAD 471 (510)
T ss_pred HHHHHHhC--CCEEEEECCCHHHHHHhCC
Confidence 99998764 7899999999853 44444
No 360
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.21 E-value=2.7e-11 Score=132.53 Aligned_cols=155 Identities=17% Similarity=0.284 Sum_probs=102.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh------------hcCccCCC----hhhcCceEEEEecC---cccccccHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV------------LEGVDIET----PDRRRKMMIACTQP---RRVAAMSVSRRVA 137 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l------------l~~~~~~~----~~~~~~~~i~~t~p---~~~~~~~v~~~v~ 137 (573)
.+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++.+ ......++.+++.
T Consensus 282 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~ 361 (500)
T TIGR02633 282 SLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNIT 361 (500)
T ss_pred EEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhc
Confidence 36789999999999999999998543 11111110 01123466777664 2344566766653
Q ss_pred Hhhh--h-c---c--c---chhce-eeeeccc-ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 138 EEMD--V-T---I--G---EEVGY-SIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 138 ~~~~--~-~---~--~---~~vg~-~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
.... . . . . ..+.. ..++.-. ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 441 (500)
T TIGR02633 362 LSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYE 441 (500)
T ss_pred chhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHH
Confidence 2110 0 0 0 0 00100 0011111 12356778999999999999999999999999999 8899999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
++++++++.+. +..+|++||.++ ...+++
T Consensus 442 l~~~l~~l~~~--g~tviivsHd~~~~~~~~d 471 (500)
T TIGR02633 442 IYKLINQLAQE--GVAIIVVSSELAEVLGLSD 471 (500)
T ss_pred HHHHHHHHHhC--CCEEEEECCCHHHHHHhCC
Confidence 99999998654 789999999986 344544
No 361
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.21 E-value=2.9e-11 Score=116.24 Aligned_cols=149 Identities=12% Similarity=0.160 Sum_probs=93.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChh-hcCceEEEEecCcccccccHHHHHHHhhhh------cccchhc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPD-RRRKMMIACTQPRRVAAMSVSRRVAEEMDV------TIGEEVG 149 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~------~~~~~vg 149 (573)
.+..|+.++|.|+|||||||++..+.-........- ....+.+++++|... ..++.+++...... .....++
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~ 105 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACA 105 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHcC
Confidence 367899999999999999999986532111101000 001366777777654 45777776432110 0011111
Q ss_pred eeeeecc-----cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH-HHHHHHHhCCCcEEEE
Q 008221 150 YSIRFED-----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG-LLKEVLKNRPDLKLVV 221 (573)
Q Consensus 150 ~~~~~~~-----~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~-~l~~l~~~~~~~~iil 221 (573)
....... ..........+|+|+++|+.++++++.+++++++|| +++|....+.+.. +++...+. +..+|+
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~--~~tvi~ 183 (204)
T cd03250 106 LEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN--NKTRIL 183 (204)
T ss_pred cHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC--CCEEEE
Confidence 1100000 011233456799999999999999999999999999 6777776666766 34544332 689999
Q ss_pred ecccccH
Q 008221 222 MSATLEA 228 (573)
Q Consensus 222 ~SATl~~ 228 (573)
+||..+.
T Consensus 184 ~sh~~~~ 190 (204)
T cd03250 184 VTHQLQL 190 (204)
T ss_pred EeCCHHH
Confidence 9998753
No 362
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=3.3e-11 Score=131.96 Aligned_cols=155 Identities=16% Similarity=0.245 Sum_probs=103.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh------------cCccCCCh----hhcCceEEEEecCc---ccccccHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL------------EGVDIETP----DRRRKMMIACTQPR---RVAAMSVSRRVA 137 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll------------~~~~~~~~----~~~~~~~i~~t~p~---~~~~~~v~~~v~ 137 (573)
.+..|++++|+|+|||||||+++.+.- ++.++... .....+.++++.+. ....+++.+++.
T Consensus 284 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 363 (506)
T PRK13549 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNIT 363 (506)
T ss_pred EEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhh
Confidence 467999999999999999999985431 11111100 01234667777652 344567777764
Q ss_pred Hhhh--h------c---ccchhcee-eeeccc-ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 138 EEMD--V------T---IGEEVGYS-IRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 138 ~~~~--~------~---~~~~vg~~-~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
.... . . ....+... .++.-. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~ 443 (506)
T PRK13549 364 LAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYE 443 (506)
T ss_pred hhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHH
Confidence 3210 0 0 00001000 011111 12356788999999999999999999999999999 8899999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+.++++.+.+. +..+|++||.++. ..+++
T Consensus 444 l~~~l~~l~~~--g~tvi~~sHd~~~~~~~~d 473 (506)
T PRK13549 444 IYKLINQLVQQ--GVAIIVISSELPEVLGLSD 473 (506)
T ss_pred HHHHHHHHHHC--CCEEEEECCCHHHHHHhCC
Confidence 99999998654 7899999999853 45554
No 363
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=4.5e-11 Score=118.68 Aligned_cols=150 Identities=22% Similarity=0.305 Sum_probs=99.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.- .| ..+.. ......+.++++.+.... .++.+++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni 104 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNV 104 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHH
Confidence 56899999999999999999985431 11 11110 011234667777766555 6787777
Q ss_pred HHhhhhc-------c-------cchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDVT-------I-------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~~-------~-------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
....... . ...++..... ....+..+..+|+|+++|+.++++++.++++++||| +++|....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 182 (250)
T PRK14240 105 AYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV--KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPIST 182 (250)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh--HHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 5321100 0 0011110000 011245677899999999999999999999999999 78888889
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
..+.+.++++. . +.++|++||.++ ...+++
T Consensus 183 ~~l~~~l~~~~-~--~~tiii~sH~~~~~~~~~d 213 (250)
T PRK14240 183 LKIEELIQELK-K--DYTIVIVTHNMQQASRISD 213 (250)
T ss_pred HHHHHHHHHHh-c--CCeEEEEEeCHHHHHhhCC
Confidence 99999998873 2 578999999875 334443
No 364
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=4.3e-11 Score=118.92 Aligned_cols=150 Identities=19% Similarity=0.268 Sum_probs=101.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh--h--------cCc------cCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV--L--------EGV------DIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l--l--------~~~------~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+. . .|. .+.. ....+.+.++++++..+. .++.+++
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 106 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENV 106 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHH
Confidence 5689999999999999999998653 1 111 1100 011234677887776555 6888877
Q ss_pred HHhhh---hc-----------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMD---VT-----------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~---~~-----------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
..... .. ....+|..... ....+..+..+|+|+++|+.++++++.+++++|||| +++|....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 184 (252)
T PRK14239 107 VYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV--KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISA 184 (252)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH--HHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 53211 00 00011110000 011245677899999999999999999999999999 78888889
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+.++++++.+ +.++|++||.++. ..+++
T Consensus 185 ~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d 215 (252)
T PRK14239 185 GKIEETLLGLKD---DYTMLLVTRSMQQASRISD 215 (252)
T ss_pred HHHHHHHHHHhh---CCeEEEEECCHHHHHHhCC
Confidence 999999998743 4789999998753 34444
No 365
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.21 E-value=1.4e-11 Score=119.98 Aligned_cols=147 Identities=23% Similarity=0.310 Sum_probs=95.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (573)
+..|+.++|+|+|||||||++..+. +++..+.. ....+.+.++++.+... ..++.+++.....
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~-~~tv~enl~~~~~~~ 105 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLF-SGTIRSNLDPFGEYS 105 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccc-cchHHHHhCcCCCCC
Confidence 5689999999999999999998442 22211110 11123466777766533 3466666531100
Q ss_pred ----hcccchhceeeeec-----ccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 142 ----VTIGEEVGYSIRFE-----DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 142 ----~~~~~~vg~~~~~~-----~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
......++...... -.......+..+|+|+++++.++++++.+|+++|||| +++|....+.+.++++++
T Consensus 106 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 185 (221)
T cd03244 106 DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREA 185 (221)
T ss_pred HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 00011112110000 0001134567899999999999999999999999999 788888888899998886
Q ss_pred HHhCCCcEEEEecccccH
Q 008221 211 LKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~ 228 (573)
.+ +.++|++||..+.
T Consensus 186 ~~---~~tii~~sh~~~~ 200 (221)
T cd03244 186 FK---DCTVLTIAHRLDT 200 (221)
T ss_pred cC---CCEEEEEeCCHHH
Confidence 32 5789999998754
No 366
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=5e-11 Score=119.03 Aligned_cols=151 Identities=21% Similarity=0.269 Sum_probs=100.0
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
.+..|+.++|+|+|||||||++..+.- .| ..+.. ....+.+.++++.+.... .++.++
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~n 113 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDN 113 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHH
Confidence 357899999999999999999885431 11 11100 011234667777766554 677777
Q ss_pred HHHhhhh--------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCccc
Q 008221 136 VAEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (573)
Q Consensus 136 v~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~ 199 (573)
+...... .....+|..... ....+..+..+|+|+++|+.++++++.+++++|||| +++|...
T Consensus 114 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~ 191 (260)
T PRK10744 114 IAFGVRLFEKLSRAEMDERVEWALTKAALWNEV--KDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPIS 191 (260)
T ss_pred HhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh--HHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHH
Confidence 6432110 001111110000 011245677899999999999999999999999999 7888888
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
...+.+.++++. . +.++|++||.++. ..+++
T Consensus 192 ~~~l~~~L~~~~-~--~~tiii~sH~~~~~~~~~d 223 (260)
T PRK10744 192 TGRIEELITELK-Q--DYTVVIVTHNMQQAARCSD 223 (260)
T ss_pred HHHHHHHHHHHh-c--CCeEEEEeCCHHHHHHhCC
Confidence 888999999874 2 5789999998753 34444
No 367
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=4.7e-11 Score=118.58 Aligned_cols=150 Identities=19% Similarity=0.275 Sum_probs=99.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.- .| ..+.. ....+.+.++++++..+. .++.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl 105 (251)
T PRK14251 27 FEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNV 105 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHH
Confidence 57899999999999999999884431 11 11110 011234667777765554 6888777
Q ss_pred HHhhhh--------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
...... .....+|... ......+..+..+|+|+++++.++++++.+++++|||| +++|....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~ 183 (251)
T PRK14251 106 AYGLKIAGVKDKELIDQRVEESLKQAAIWK--ETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISS 183 (251)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCCc--chHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHH
Confidence 432110 0001111100 00011245677899999999999999999999999999 78888888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+...++++.+ +.++|++||.++. ..+++
T Consensus 184 ~~l~~~l~~~~~---~~tiiiisH~~~~~~~~~d 214 (251)
T PRK14251 184 SEIEETLMELKH---QYTFIMVTHNLQQAGRISD 214 (251)
T ss_pred HHHHHHHHHHHc---CCeEEEEECCHHHHHhhcC
Confidence 889999988742 5789999998853 44444
No 368
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.20 E-value=3.4e-11 Score=120.63 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=97.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.- .| ..+.. ....+.+.++++.+..+. .++.+++
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 120 (267)
T PRK14235 42 IPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP-KSIYENV 120 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCC-CcHHHHH
Confidence 56899999999999999999985431 11 11100 011234667777776554 4777777
Q ss_pred HHhhh---h-----c-------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCccc
Q 008221 137 AEEMD---V-----T-------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (573)
Q Consensus 137 ~~~~~---~-----~-------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~ 199 (573)
..... . . ....+|..... ....+..+..+|+|+++|+.++++++.+++++|||| +++|...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 198 (267)
T PRK14235 121 AYGPRIHGLARSKAELDEIVETSLRKAGLWEEV--KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIA 198 (267)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHcCCchhh--hHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH
Confidence 53210 0 0 01111110000 011245677899999999999999999999999999 7888888
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
...+.++++++.+ +.++|++||.++.
T Consensus 199 ~~~l~~~L~~l~~---~~tiiivtH~~~~ 224 (267)
T PRK14235 199 TAKVEELIDELRQ---NYTIVIVTHSMQQ 224 (267)
T ss_pred HHHHHHHHHHHhc---CCeEEEEEcCHHH
Confidence 8999999988743 4689999998753
No 369
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.20 E-value=8.5e-11 Score=117.29 Aligned_cols=155 Identities=16% Similarity=0.106 Sum_probs=95.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhc-CceEEEEecCcccccccHHHHHHHhh---hhcc---cchhc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRR-RKMMIACTQPRRVAAMSVSRRVAEEM---DVTI---GEEVG 149 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~-~~~~i~~t~p~~~~~~~v~~~v~~~~---~~~~---~~~vg 149 (573)
.+..|+.++|+|+|||||||++..+.-........-.. .....+.+.+......++.+++.... +... ...+.
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 125 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTP 125 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 36799999999999999999998654211110000000 01122233333333456666664211 1100 00000
Q ss_pred eeeee-cccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccc
Q 008221 150 YSIRF-EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (573)
Q Consensus 150 ~~~~~-~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl 226 (573)
..... .-....+..+..+|+|+++|+.++++++.+++++|||| +++|......+++.+.++.+. +.++|++||.+
T Consensus 126 ~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~--g~tiIiisH~~ 203 (264)
T PRK13546 126 KIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ--NKTIFFVSHNL 203 (264)
T ss_pred HHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC--CCEEEEEcCCH
Confidence 00000 00112345677899999999999999999999999999 788888888899998887543 78999999987
Q ss_pred cH-HHHHc
Q 008221 227 EA-EKFQG 233 (573)
Q Consensus 227 ~~-~~~~~ 233 (573)
+. ..+++
T Consensus 204 ~~i~~~~d 211 (264)
T PRK13546 204 GQVRQFCT 211 (264)
T ss_pred HHHHHHcC
Confidence 53 44444
No 370
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.20 E-value=7.1e-11 Score=115.17 Aligned_cols=149 Identities=15% Similarity=0.093 Sum_probs=92.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEE-Ee-cCcccccccHHHHHHHhhh---h---------
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA-CT-QPRRVAAMSVSRRVAEEMD---V--------- 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~-~t-~p~~~~~~~v~~~v~~~~~---~--------- 142 (573)
.+..|+.++|+|+|||||||++..+.-........-...+..+. .. ........++.+++..... .
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 123 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKI 123 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence 36789999999999999999998553211100000000000000 00 0111123456665532110 0
Q ss_pred -cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEE
Q 008221 143 -TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKL 219 (573)
Q Consensus 143 -~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~i 219 (573)
.....+|.. ...++.+..+|+|+++|+.++++++.+|+++|||| +++|......+.+.++++.+. +.++
T Consensus 124 ~~~l~~~~l~------~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~--~~ti 195 (224)
T cd03220 124 DEIIEFSELG------DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ--GKTV 195 (224)
T ss_pred HHHHHHcCCh------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEE
Confidence 001111111 22345677899999999999999999999999999 788888888899999988654 6799
Q ss_pred EEecccccH-HHHHc
Q 008221 220 VVMSATLEA-EKFQG 233 (573)
Q Consensus 220 il~SATl~~-~~~~~ 233 (573)
|+.||..+. ..+++
T Consensus 196 ii~sH~~~~~~~~~d 210 (224)
T cd03220 196 ILVSHDPSSIKRLCD 210 (224)
T ss_pred EEEeCCHHHHHHhCC
Confidence 999998753 33443
No 371
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=5.5e-11 Score=118.63 Aligned_cols=150 Identities=20% Similarity=0.288 Sum_probs=100.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.- .| ..+.. ......+.++++++..+. .++.+++
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl 108 (259)
T PRK14260 30 IYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENV 108 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHH
Confidence 56899999999999999999985431 11 11100 011234677777776555 7888777
Q ss_pred HHhhhh--------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
...... .....+|..... ....+..+..+|+|+++|+.++++++.++++++||| +++|....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 186 (259)
T PRK14260 109 AYGVRISAKLPQADLDEIVESALKGAALWQEV--KDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIAT 186 (259)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh--hhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 432110 001111211000 012345677899999999999999999999999999 78888888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+.++++++.+ +..+|++||.++. ..+++
T Consensus 187 ~~l~~~l~~~~~---~~tiii~tH~~~~i~~~~d 217 (259)
T PRK14260 187 MKVEELIHSLRS---ELTIAIVTHNMQQATRVSD 217 (259)
T ss_pred HHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcC
Confidence 889999988743 4799999998853 34444
No 372
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.19 E-value=4.1e-11 Score=145.51 Aligned_cols=147 Identities=19% Similarity=0.300 Sum_probs=107.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhh---h
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM---D 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~ 141 (573)
+.+|+++++.|+|||||||++..+ .+++.++.. ...++.++++++++.....+++.+++.... +
T Consensus 953 I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg 1032 (2272)
T TIGR01257 953 FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG 1032 (2272)
T ss_pred EcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC
Confidence 578999999999999999999833 233333221 112345778888877777788888875321 1
Q ss_pred h----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 142 V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 142 ~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
. .....+|.. ...+..+..+|+|+++|+.++++++.++++++||| +++|......+.++|++
T Consensus 1033 ~~~~~~~~~v~~lL~~vgL~------~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~ 1106 (2272)
T TIGR01257 1033 RSWEEAQLEMEAMLEDTGLH------HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK 1106 (2272)
T ss_pred CCHHHHHHHHHHHHHHcCCc------hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 0 011112211 23356788899999999999999999999999999 88999999999999999
Q ss_pred HHHhCCCcEEEEecccccH-HHHHc
Q 008221 210 VLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+. . +..+|+.||.++. +.+++
T Consensus 1107 l~-~--g~TIIltTHdmdea~~laD 1128 (2272)
T TIGR01257 1107 YR-S--GRTIIMSTHHMDEADLLGD 1128 (2272)
T ss_pred Hh-C--CCEEEEEECCHHHHHHhCC
Confidence 83 2 7899999999864 44554
No 373
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.19 E-value=3.7e-11 Score=132.25 Aligned_cols=151 Identities=20% Similarity=0.329 Sum_probs=100.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------------cCccCCC--hh-----hcCceEEEEecCc--ccccccH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------------EGVDIET--PD-----RRRKMMIACTQPR--RVAAMSV 132 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------------~~~~~~~--~~-----~~~~~~i~~t~p~--~~~~~~v 132 (573)
+..|+.++|+|+|||||||+++.+.- ++..+.. .. ..+.++++++.+. .....++
T Consensus 32 i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~ 111 (529)
T PRK15134 32 IEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTL 111 (529)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhH
Confidence 56899999999999999999874421 1111111 00 0134677887763 2233455
Q ss_pred HHHHHHhh----hh----------cccchhceeeeeccc-ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCc
Q 008221 133 SRRVAEEM----DV----------TIGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHE 195 (573)
Q Consensus 133 ~~~v~~~~----~~----------~~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~ 195 (573)
.+++.... +. .....+|.. .. ...+..+..+|+|+++|+.++++++.+|++++||| +++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~L 187 (529)
T PRK15134 112 EKQLYEVLSLHRGMRREAARGEILNCLDRVGIR----QAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTAL 187 (529)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCC----ChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCcc
Confidence 55443211 00 011111211 00 01256788999999999999999999999999999 899
Q ss_pred CcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 196 r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
|......++++++++.+.. +..+|++||.++. ..+++
T Consensus 188 D~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d 225 (529)
T PRK15134 188 DVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVRKLAD 225 (529)
T ss_pred CHHHHHHHHHHHHHHHHhc-CCeEEEEcCcHHHHHHhcC
Confidence 9999999999999986543 6899999999863 34443
No 374
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=5.8e-11 Score=119.08 Aligned_cols=150 Identities=17% Similarity=0.278 Sum_probs=99.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.- .| .++.. ....+.+.++++++..+. .++.+++
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 122 (268)
T PRK14248 44 IEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFP-KSIYNNI 122 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCc-ccHHHHH
Confidence 56899999999999999999885531 11 11100 011234677777765554 3777776
Q ss_pred HHhhhhc--------------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
....... ....++... .-....+..+..+|+|+++|+.++++++.+++++|||| +++|....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~ 200 (268)
T PRK14248 123 THALKYAGERRKSVLDEIVEESLTKAALWD--EVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISN 200 (268)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHcCCCc--chHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHH
Confidence 5321100 000111100 00012245677899999999999999999999999999 78888889
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+.++++++.+ +.++|++||.++. ..+++
T Consensus 201 ~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d 231 (268)
T PRK14248 201 AKIEELITELKE---EYSIIIVTHNMQQALRVSD 231 (268)
T ss_pred HHHHHHHHHHhc---CCEEEEEEeCHHHHHHhCC
Confidence 999999998743 4689999999863 34443
No 375
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=5e-11 Score=118.38 Aligned_cols=150 Identities=17% Similarity=0.231 Sum_probs=99.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhc----------C------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.-. | ..+.. ....+.+.++++.+..+. .++.+++
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 105 (251)
T PRK14249 27 FPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP-KSIFDNV 105 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCc-CcHHHHH
Confidence 578999999999999999998843211 1 11110 011234677777776554 4777776
Q ss_pred HHhhh---hc----c-------cchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMD---VT----I-------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~---~~----~-------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
..... .. . ...+|..... ....+..+..+|+|+++|+.++++++.+++++|||| +++|....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 183 (251)
T PRK14249 106 AFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV--KDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST 183 (251)
T ss_pred hhHHHhcCCChhhHHHHHHHHHHHHhCCchhh--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 43211 00 0 0011110000 012345677899999999999999999999999999 78888889
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+.++++++. . +.++|++||.++. ..+++
T Consensus 184 ~~l~~~l~~~~-~--~~tilivsh~~~~~~~~~d 214 (251)
T PRK14249 184 MRIEELMQELK-Q--NYTIAIVTHNMQQAARASD 214 (251)
T ss_pred HHHHHHHHHHh-c--CCEEEEEeCCHHHHHhhCC
Confidence 99999998873 2 6799999998753 34443
No 376
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=6.7e-11 Score=118.05 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=99.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh--h--------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV--L--------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l--l--------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+. + .| .++.. ....+.+.++++.+..+ ..++.+++
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl 109 (261)
T PRK14263 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNV 109 (261)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHH
Confidence 5689999999999999999988442 1 11 11110 01123466777776554 57888777
Q ss_pred HHhhh------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 137 AEEMD------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 137 ~~~~~------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
..... ......+|..... ....+..+..+|+|+++|+.++++++.++++++||| +++|......
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~ 187 (261)
T PRK14263 110 AFGLRLNRYKGDLGDRVKHALQGAALWDEV--KDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRR 187 (261)
T ss_pred HHHHhhcCchHHHHHHHHHHHHHcCCchhh--hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHH
Confidence 43211 0111112211000 001234566799999999999999999999999999 7888888999
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+.++++++. . +.++|++||.++. ..+++
T Consensus 188 l~~~l~~~~-~--~~tii~isH~~~~i~~~~d 216 (261)
T PRK14263 188 VEELMVELK-K--DYTIALVTHNMQQAIRVAD 216 (261)
T ss_pred HHHHHHHHh-c--CCeEEEEeCCHHHHHHhCC
Confidence 999999874 2 5789999998863 44444
No 377
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.19 E-value=3.7e-11 Score=136.45 Aligned_cols=145 Identities=18% Similarity=0.312 Sum_probs=97.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (573)
+..|+.++|+|+|||||||+++. +.+++.++.. ...++.+.+++++|..+. -++.+++.-...
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~~~ 554 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAPLT 554 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCCCC
Confidence 67899999999999999999883 3445544332 223456778888776554 477777743211
Q ss_pred ----hcccchhceeeeecccc-cccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 142 ----VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 142 ----~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
......+|......... ..++.+ ..+|+|++||+.++|+++.+++++|||| +++|......+.+.++++
T Consensus 555 ~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~ 634 (686)
T TIGR03797 555 LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL 634 (686)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh
Confidence 11122222211111111 112222 3589999999999999999999999999 678877777777777664
Q ss_pred HHhCCCcEEEEecccccH
Q 008221 211 LKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~ 228 (573)
+.++|++||.++.
T Consensus 635 -----~~T~IiItHr~~~ 647 (686)
T TIGR03797 635 -----KVTRIVIAHRLST 647 (686)
T ss_pred -----CCeEEEEecChHH
Confidence 4689999998753
No 378
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.19 E-value=3.1e-11 Score=134.82 Aligned_cols=149 Identities=23% Similarity=0.233 Sum_probs=99.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
.+..|+.++|+|++||||||++..+ .+++.++.. ...++.+.+++++|..+. -++.+++.-...
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~-~Ti~~NI~~~~~~ 441 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGRDI 441 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcccc-chHHHHHHhCCCC
Confidence 3678999999999999999998833 344433321 123456778888887665 378877753211
Q ss_pred -----hcccchhceeeeecccc-cccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 142 -----VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 142 -----~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
......+|......... ..++.+ ..+|+|++||+.++|+++.+++++|||| +++|......+.+.+++
T Consensus 442 ~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~ 521 (592)
T PRK10790 442 SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA 521 (592)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11122233221111110 012222 3489999999999999999999999999 77887777777777776
Q ss_pred HHHhCCCcEEEEecccccHH
Q 008221 210 VLKNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~~ 229 (573)
+. ++.++|++||.++.-
T Consensus 522 ~~---~~~tvIivtHr~~~l 538 (592)
T PRK10790 522 VR---EHTTLVVIAHRLSTI 538 (592)
T ss_pred Hh---CCCEEEEEecchHHH
Confidence 53 368999999987543
No 379
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=5.5e-11 Score=120.29 Aligned_cols=151 Identities=17% Similarity=0.211 Sum_probs=100.3
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh----------------cCccCCC-----hhhcCceEEEEecCcccccccHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL----------------EGVDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll----------------~~~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
.+..|++++|+|+|||||||++..+.- ++..+.. ....+.+.++++.+.... .++.++
T Consensus 61 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 139 (286)
T PRK14275 61 DILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFP-KSIFDN 139 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCc-cCHHHH
Confidence 367899999999999999999985431 1111100 011234667777766554 478777
Q ss_pred HHHhhh---h-----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCccc
Q 008221 136 VAEEMD---V-----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (573)
Q Consensus 136 v~~~~~---~-----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~ 199 (573)
+..... . .....+|..... ....+..+..+|+|+++|+.++++++.+++++|||| +++|...
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~ 217 (286)
T PRK14275 140 IAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV--SDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKA 217 (286)
T ss_pred HHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch--hhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 753211 0 000111110000 012355678899999999999999999999999999 7888888
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
...+.+.++++.. +..+|++||.++. ..+++
T Consensus 218 ~~~l~~~L~~~~~---~~tvIivsH~~~~~~~~~d 249 (286)
T PRK14275 218 TAKIEDLIQELRG---SYTIMIVTHNMQQASRVSD 249 (286)
T ss_pred HHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCC
Confidence 8889999888743 4689999998754 33443
No 380
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=6.4e-11 Score=119.71 Aligned_cols=151 Identities=18% Similarity=0.256 Sum_probs=100.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhc----------------CccCCC-----hhhcCceEEEEecCcccccccHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLE----------------GVDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~----------------~~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
.+..|+.++|+|+|||||||++..+.-. +..+.. ....+.+.++++.+..+. .++.++
T Consensus 61 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 139 (285)
T PRK14254 61 DIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFP-KSIYDN 139 (285)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCc-CCHHHH
Confidence 3678999999999999999998854311 111100 011234667777765554 377777
Q ss_pred HHHhhhh------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 136 VAEEMDV------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 136 v~~~~~~------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
+...... .....+|..... ....+..+..+|+|+++|+.++++++.+++++|||| +++|.....
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i--~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~ 217 (285)
T PRK14254 140 VAYGLKIQGYDGDIDERVEESLRRAALWDEV--KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATS 217 (285)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCCchh--HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence 6432110 001111110000 012245677899999999999999999999999999 788888888
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+..+++++.+ +..+|++||.++. ..+++
T Consensus 218 ~l~~~L~~~~~---~~tiii~tH~~~~i~~~~d 247 (285)
T PRK14254 218 KIEDLIEELAE---EYTVVIVTHNMQQAARISD 247 (285)
T ss_pred HHHHHHHHHhc---CCEEEEEeCCHHHHHhhcC
Confidence 89999998854 3689999998763 34444
No 381
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.18 E-value=3.6e-11 Score=132.57 Aligned_cols=148 Identities=18% Similarity=0.244 Sum_probs=98.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
.+..|+.++|+|++||||||+++.+ .+++.++.. ...++.+.+++++|..+. -++.+++.....
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~ 422 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA-GTIAENIRLARPD 422 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccCCC
Confidence 4678999999999999999998833 344443322 122345777887776554 588888753211
Q ss_pred ---h---cccchhceeeeecccc-cccc----cccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 142 ---V---TIGEEVGYSIRFEDCS-SART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 142 ---~---~~~~~vg~~~~~~~~~-~~~~----~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
. .....+|......... ..++ .-..+|+|++||+.++|+++.+++++|||| +++|......+.+.++
T Consensus 423 ~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~ 502 (529)
T TIGR02857 423 ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALR 502 (529)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 1 1111222211111111 0122 224589999999999999999999999999 6777777777777777
Q ss_pred HHHHhCCCcEEEEecccccH
Q 008221 209 EVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~ 228 (573)
++. ++.++|++||.++.
T Consensus 503 ~~~---~~~t~i~itH~~~~ 519 (529)
T TIGR02857 503 ALA---QGRTVLLVTHRLAL 519 (529)
T ss_pred Hhc---CCCEEEEEecCHHH
Confidence 653 37899999998754
No 382
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.18 E-value=8.2e-11 Score=117.71 Aligned_cols=151 Identities=17% Similarity=0.271 Sum_probs=99.3
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
.+..|+.++|+|+|||||||++..+.- .| ..+.. ....+.+.++++.+..+. .++.++
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 110 (264)
T PRK14243 32 DIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDN 110 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHH
Confidence 357899999999999999999985441 11 11100 011234667777665444 477777
Q ss_pred HHHhhhh---c---------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 136 VAEEMDV---T---------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 136 v~~~~~~---~---------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
+...... . ....+|..... ....+..+..+|+|+++|+.++++++.+|+++|||| +++|.....
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 188 (264)
T PRK14243 111 IAYGARINGYKGDMDELVERSLRQAALWDEV--KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTL 188 (264)
T ss_pred HHhhhhhcCcchHHHHHHHHHHHHhCchhhH--HHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 6432110 0 00111110000 011245677899999999999999999999999999 788888888
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccc-HHHHHc
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~-~~~~~~ 233 (573)
.+.++++++.+ +.++|++||.++ ...+++
T Consensus 189 ~l~~~L~~~~~---~~tvi~vtH~~~~~~~~~d 218 (264)
T PRK14243 189 RIEELMHELKE---QYTIIIVTHNMQQAARVSD 218 (264)
T ss_pred HHHHHHHHHhc---CCEEEEEecCHHHHHHhCC
Confidence 99999988753 468999999875 344544
No 383
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.18 E-value=5.8e-11 Score=119.00 Aligned_cols=151 Identities=15% Similarity=0.281 Sum_probs=100.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
.+..|+.++|+|+|||||||++..+.- .| ..+.. ....+.+.++++++..+. .++.++
T Consensus 42 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 120 (267)
T PRK14237 42 QFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYEN 120 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHH
Confidence 356899999999999999999984431 11 11100 011335677777766554 588887
Q ss_pred HHHhhhhc-------c-------cchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCccc
Q 008221 136 VAEEMDVT-------I-------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (573)
Q Consensus 136 v~~~~~~~-------~-------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~ 199 (573)
+....... . ...+|..... ....+..+..+|+|+++|+.++++++.+++++|||| +++|...
T Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i--~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~ 198 (267)
T PRK14237 121 ITFALERAGVKDKKVLDEIVETSLKQAALWDQV--KDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPIS 198 (267)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh--hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 75421100 0 0111110000 012345677899999999999999999999999999 7888888
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
...+.++++++. . +..+|++||.++. ..+++
T Consensus 199 ~~~l~~~l~~~~-~--~~tiii~tH~~~~~~~~~d 230 (267)
T PRK14237 199 TMQLEETMFELK-K--NYTIIIVTHNMQQAARASD 230 (267)
T ss_pred HHHHHHHHHHHh-c--CCEEEEEecCHHHHHHhcC
Confidence 888999998873 2 5789999998753 34444
No 384
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=6.6e-11 Score=117.60 Aligned_cols=153 Identities=18% Similarity=0.264 Sum_probs=101.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhc----------C------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.-. | ..+.. ......+.++++.+......++.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl 106 (252)
T PRK14272 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNV 106 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHH
Confidence 578999999999999999999854311 1 11110 01123466778877766667888877
Q ss_pred HHhhhhc-------ccchhce---eeeec-c-cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 137 AEEMDVT-------IGEEVGY---SIRFE-D-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 137 ~~~~~~~-------~~~~vg~---~~~~~-~-~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
....... ....+.. ..... . ....+..+..+|+|+++|+.++++++.+++++|||| +++|......
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~ 186 (252)
T PRK14272 107 VAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTAR 186 (252)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 5322100 0000000 00000 0 012245677899999999999999999999999999 7888888888
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+.+.++++. . +.++|++||..+. ..+++
T Consensus 187 l~~~l~~~~-~--~~tiii~sH~~~~~~~~~d 215 (252)
T PRK14272 187 IEDLMTDLK-K--VTTIIIVTHNMHQAARVSD 215 (252)
T ss_pred HHHHHHHHh-c--CCeEEEEeCCHHHHHHhCC
Confidence 999998874 2 5789999998753 33443
No 385
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.18 E-value=3.6e-11 Score=134.21 Aligned_cols=150 Identities=22% Similarity=0.277 Sum_probs=98.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
.+..|+.++|+|++||||||++.... +++.++.. ...++.+.++++.|..+. -++.+++.-...
T Consensus 357 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~ 435 (588)
T PRK13657 357 EAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGRPD 435 (588)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCCCC
Confidence 35789999999999999999998432 33332221 122356778888876554 578888753211
Q ss_pred ---h---cccchhceeeeecccc-ccccc----ccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 142 ---V---TIGEEVGYSIRFEDCS-SARTV----LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 142 ---~---~~~~~vg~~~~~~~~~-~~~~~----i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
. .....+|......... ..++. -..+|+|++||+.++|+++.+++++|||| +++|......+++.++
T Consensus 436 ~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~ 515 (588)
T PRK13657 436 ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD 515 (588)
T ss_pred CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 0 1112222211111110 11222 23599999999999999999999999999 7777777777777776
Q ss_pred HHHHhCCCcEEEEecccccHHH
Q 008221 209 EVLKNRPDLKLVVMSATLEAEK 230 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~~~ 230 (573)
.+. ++.++|++||..+...
T Consensus 516 ~~~---~~~tvIiitHr~~~~~ 534 (588)
T PRK13657 516 ELM---KGRTTFIIAHRLSTVR 534 (588)
T ss_pred HHh---cCCEEEEEEecHHHHH
Confidence 542 3789999999875433
No 386
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=4.1e-11 Score=129.18 Aligned_cols=148 Identities=26% Similarity=0.409 Sum_probs=96.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
.|..|++++++||+||||||... ++++|+.++.. ..-++.++++-++|. +-.-++.+|++.....
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPv-LFs~sI~eNI~YG~~~ 568 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPV-LFSGSIRENIAYGLDN 568 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccce-eecccHHHHHhcCCCC
Confidence 57899999999999999999766 56677776543 223345666655554 4456888888543210
Q ss_pred c----------ccchhceeeeecccccccccc----cccCHHHHHHHHhcccccCCCcEEEEeCC--CcCcccHHHHHHH
Q 008221 143 T----------IGEEVGYSIRFEDCSSARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDEA--HERTLATDVLFGL 206 (573)
Q Consensus 143 ~----------~~~~vg~~~~~~~~~~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDEa--~~r~~~~d~ll~~ 206 (573)
. ......+...+.+ ..+|.+ ..+|+|++||++++|+++.+|.++||||| .+|......+.+.
T Consensus 569 ~t~e~i~~AAk~ANah~FI~~~p~--gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~a 646 (716)
T KOG0058|consen 569 ATDEEIEAAAKMANAHEFITNFPD--GYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEA 646 (716)
T ss_pred CCHHHHHHHHHHhChHHHHHhCcc--ccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHH
Confidence 0 0000000001100 012222 35899999999999999999999999995 4555555556666
Q ss_pred HHHHHHhCCCcEEEEecccccHHH
Q 008221 207 LKEVLKNRPDLKLVVMSATLEAEK 230 (573)
Q Consensus 207 l~~l~~~~~~~~iil~SATl~~~~ 230 (573)
+.++.+ +++++++-|-+..-+
T Consensus 647 L~~~~~---~rTVlvIAHRLSTV~ 667 (716)
T KOG0058|consen 647 LDRLMQ---GRTVLVIAHRLSTVR 667 (716)
T ss_pred HHHhhc---CCeEEEEehhhhHhh
Confidence 655544 578999999776433
No 387
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.18 E-value=5.2e-11 Score=119.63 Aligned_cols=152 Identities=25% Similarity=0.369 Sum_probs=110.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh----------hhhhcCccCCC------hhhcCceEEEEecCcc--cccccHHHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIP----------QFVLEGVDIET------PDRRRKMMIACTQPRR--VAAMSVSRRVAE 138 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~----------~~ll~~~~~~~------~~~~~~~~i~~t~p~~--~~~~~v~~~v~~ 138 (573)
.+..|+.++++|++||||||+-. .+.+++.++.. ...++.+-++++.|.. -+-+++.+-+.+
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~E 388 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEE 388 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhh
Confidence 46789999999999999999644 33444544332 1123456788888853 345677766654
Q ss_pred hhh---------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 139 EMD---------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 139 ~~~---------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
.+. ......||.. ....+.+++..|+|++||+.++++++.+|++++||| ..+|..-..
T Consensus 389 GL~vh~~~ls~~eR~~rv~~aL~EVGLD-----p~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQa 463 (534)
T COG4172 389 GLRVHEPKLSAAERDQRVIEALEEVGLD-----PATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQA 463 (534)
T ss_pred hhhhcCCCCCHHHHHHHHHHHHHHcCCC-----hhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHH
Confidence 321 1223445543 123467888999999999999999999999999999 456667777
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccH-HHHHch
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
.++++++.+.+++ ++.-+++||++.+ ..++++
T Consensus 464 Qvv~LLr~LQ~k~-~LsYLFISHDL~VvrAl~~~ 496 (534)
T COG4172 464 QVLDLLRDLQQKH-GLSYLFISHDLAVVRALCHR 496 (534)
T ss_pred HHHHHHHHHHHHh-CCeEEEEeccHHHHHHhhce
Confidence 8999999998887 9999999999975 456654
No 388
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.18 E-value=3.3e-11 Score=137.03 Aligned_cols=149 Identities=21% Similarity=0.305 Sum_probs=98.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
.+..|+.++|+|+|||||||++... .+++.++.. ...++.+.++++.+..+. -++.+++.....
T Consensus 487 ~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~~~ 565 (694)
T TIGR03375 487 TIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGAPY 565 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCCCC
Confidence 3678999999999999999998843 334433221 122345677777776544 588888753211
Q ss_pred ------hcccchhceeeeecccc-cccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 142 ------VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 142 ------~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
......+|......... ..++.+ ..+|+|++||+.++|+++.+++++|||| +++|......+.+.++
T Consensus 566 ~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~ 645 (694)
T TIGR03375 566 ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK 645 (694)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 01111222111011111 012222 3599999999999999999999999999 6788787877877777
Q ss_pred HHHHhCCCcEEEEecccccHH
Q 008221 209 EVLKNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~~ 229 (573)
++. ++.++|++||.++.-
T Consensus 646 ~~~---~~~T~iiItHrl~~~ 663 (694)
T TIGR03375 646 RWL---AGKTLVLVTHRTSLL 663 (694)
T ss_pred HHh---CCCEEEEEecCHHHH
Confidence 653 368999999988643
No 389
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=1.3e-10 Score=115.59 Aligned_cols=145 Identities=17% Similarity=0.265 Sum_probs=98.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.- .| ..+.. ....+.+.++++++.... .++.+++
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl 106 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENV 106 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHH
Confidence 57899999999999999999985531 11 11100 011235677777776555 5777776
Q ss_pred HHhhhh---cc-----------cchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDV---TI-----------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~---~~-----------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
...... .. ...++..... ....+..+..+|+|+++|+.++++++.++++++||| +++|....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i--~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~ 184 (252)
T PRK14255 107 IYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV--KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS 184 (252)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCccch--hhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 532110 00 0111110000 012345677899999999999999999999999999 78888889
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
..+..+++++.+ +.++|++||.++.
T Consensus 185 ~~l~~~l~~~~~---~~tii~vsH~~~~ 209 (252)
T PRK14255 185 TQIENMLLELRD---QYTIILVTHSMHQ 209 (252)
T ss_pred HHHHHHHHHHHh---CCEEEEEECCHHH
Confidence 999999998743 4689999998753
No 390
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.17 E-value=3.7e-11 Score=133.98 Aligned_cols=150 Identities=20% Similarity=0.267 Sum_probs=98.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
.+..|+.++|+|+|||||||++..+ .+++.++.. ....+.+.++++++..+. -++.+++.-...
T Consensus 365 ~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~ 443 (582)
T PRK11176 365 KIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYARTE 443 (582)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCCCC
Confidence 3578999999999999999998843 333333221 122345677777776554 577887753211
Q ss_pred ----hc---ccchhceeeeecccc-cccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 142 ----VT---IGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 142 ----~~---~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
.. ....+|......... ..++.+ ..+|+|++||+.++|+++.+++++|||| +++|......+.+.+
T Consensus 444 ~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l 523 (582)
T PRK11176 444 QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523 (582)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHH
Confidence 11 111222111011110 112222 3489999999999999999999999999 788888888888777
Q ss_pred HHHHHhCCCcEEEEecccccHHH
Q 008221 208 KEVLKNRPDLKLVVMSATLEAEK 230 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~~~~ 230 (573)
+++. .++++|++||.++.-.
T Consensus 524 ~~~~---~~~tvI~VtHr~~~~~ 543 (582)
T PRK11176 524 DELQ---KNRTSLVIAHRLSTIE 543 (582)
T ss_pred HHHh---CCCEEEEEecchHHHH
Confidence 7652 3689999999885433
No 391
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.17 E-value=9.3e-11 Score=106.02 Aligned_cols=104 Identities=26% Similarity=0.335 Sum_probs=75.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeeccc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC 157 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~ 157 (573)
+..|+.++|.|+|||||||++..+. +..... .+. +.... . ..++|..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~--G~~~~~----~G~-i~~~~-~--------------------~~i~~~~----- 69 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIA--GELEPD----EGI-VTWGS-T--------------------VKIGYFE----- 69 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHc--CCCCCC----ceE-EEECC-e--------------------EEEEEEc-----
Confidence 5789999999999999999998653 221011 111 11110 0 1122221
Q ss_pred ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 158 SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 158 ~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
.+|+|+++|+.++++++.+++++++|| +++|....+.+.+.++++ +.+++++||..+
T Consensus 70 --------~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~ 128 (144)
T cd03221 70 --------QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRY 128 (144)
T ss_pred --------cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHH
Confidence 099999999999999999999999999 778878888888888765 358999999875
No 392
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=8.4e-11 Score=116.63 Aligned_cols=151 Identities=23% Similarity=0.299 Sum_probs=100.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh----------------cCccCCC----hhhcCceEEEEecCcccccccHHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL----------------EGVDIET----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll----------------~~~~~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
.+..|++++|+|+|||||||++..+.- ++..+.. ....+.+.++++++.... .++.+++
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l 103 (249)
T PRK14253 25 PIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENV 103 (249)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHH
Confidence 356899999999999999999985421 1111100 011234677787776555 6777777
Q ss_pred HHhhhh-cc-------------cchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDV-TI-------------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~-~~-------------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
...... .. ...+|..... ....+..+..+|+|+++|+.++++++.+++++|+|| +++|....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 181 (249)
T PRK14253 104 AYGLRAQGIKDKKVLDEVVERSLRGAALWDEV--KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIAT 181 (249)
T ss_pred HhHHHhcCCCchHHHHHHHHHHHHHcCCchhh--hHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHH
Confidence 432110 00 0011110000 012245667899999999999999999999999999 78888888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+..+++++.+ +.++|++||.++. ..+++
T Consensus 182 ~~l~~~l~~~~~---~~tii~~sh~~~~~~~~~d 212 (249)
T PRK14253 182 HKIEELMEELKK---NYTIVIVTHSMQQARRISD 212 (249)
T ss_pred HHHHHHHHHHhc---CCeEEEEecCHHHHHHhCC
Confidence 889999998743 4789999998753 34443
No 393
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.17 E-value=1.1e-10 Score=115.69 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=54.6
Q ss_pred ccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 166 YLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 166 ~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
.+|+|+++|+.++++++.+|++++||| +++|......+.++++++.+. +.++|++||.++.
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~--~~tiii~sH~~~~ 207 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDG--KRSFIIVTHYQRI 207 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHH
Confidence 699999999999999999999999999 888889899999999887543 6899999998753
No 394
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.17 E-value=7.8e-11 Score=130.19 Aligned_cols=149 Identities=19% Similarity=0.221 Sum_probs=98.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
.+..|+.++|+|+|||||||++... .+++.++.. ...++.+.+++++|.... -++.+++.....
T Consensus 340 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~ 418 (544)
T TIGR01842 340 RLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFP-GTVAENIARFGEN 418 (544)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCccccc-ccHHHHHhccCCC
Confidence 3578999999999999999998843 233322211 112345777787776654 478888752110
Q ss_pred ---hcc---cchhceeeeeccc-----ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 142 ---VTI---GEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 142 ---~~~---~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
..+ ....+........ .........+|+|++||+.++++++.+++++|||| +++|....+.+.+.++
T Consensus 419 ~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~ 498 (544)
T TIGR01842 419 ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498 (544)
T ss_pred CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHH
Confidence 010 1111111000000 11122345699999999999999999999999999 6788888888888887
Q ss_pred HHHHhCCCcEEEEecccccH
Q 008221 209 EVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~ 228 (573)
++... +.++|++||.++.
T Consensus 499 ~~~~~--~~tvi~ith~~~~ 516 (544)
T TIGR01842 499 ALKAR--GITVVVITHRPSL 516 (544)
T ss_pred HHhhC--CCEEEEEeCCHHH
Confidence 76432 6799999998753
No 395
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.17 E-value=8.9e-11 Score=129.83 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=99.9
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh--------c--
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--------T-- 143 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--------~-- 143 (573)
.+..|+.++|+|+|||||||++..+.-....... ......++++++.|.....+++.+++...... .
T Consensus 29 ~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 108 (556)
T PRK11819 29 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEI 108 (556)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHH
Confidence 4678999999999999999999865421111000 01123467788887666667888776432100 0
Q ss_pred ---ccc--------------------hhc-ee--------eeecccccccccccccCHHHHHHHHhcccccCCCcEEEEe
Q 008221 144 ---IGE--------------------EVG-YS--------IRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLD 191 (573)
Q Consensus 144 ---~~~--------------------~vg-~~--------~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILD 191 (573)
... .++ +. .........+..+..+|+|+++|+.++++++.+++++|||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLD 188 (556)
T PRK11819 109 YAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLD 188 (556)
T ss_pred HHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 000 000 00 0000011135667789999999999999999999999999
Q ss_pred C--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 192 E--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 192 E--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
| +|+|......+.++++++ ...+|++||.++. ..+++
T Consensus 189 EPt~~LD~~~~~~l~~~L~~~-----~~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 189 EPTNHLDAESVAWLEQFLHDY-----PGTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred CCCCcCChHHHHHHHHHHHhC-----CCeEEEEeCCHHHHHhhcC
Confidence 9 888888888888888765 2489999998853 33443
No 396
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=9.6e-11 Score=120.50 Aligned_cols=150 Identities=17% Similarity=0.255 Sum_probs=100.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------------cCccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------------EGVDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------------~~~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
|..|+.++|+|+|||||||++..+.- ++.++.. ......+.+++++|..+ ..++.+++
T Consensus 105 I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~-~~ti~eNi 183 (329)
T PRK14257 105 IKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNV 183 (329)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC-CCcHHHHH
Confidence 67899999999999999999885431 1111110 01234577888887655 46888887
Q ss_pred HHhhhh------c--------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDV------T--------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~------~--------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
...... . ....++..... ....+.....+|+|+++|+.++++++.++++++||| +++|....
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l--~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~ 261 (329)
T PRK14257 184 AYGPRNNGINDRKILEKIVEKSLKSAALWDEV--KDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIAT 261 (329)
T ss_pred HhHHHhcCCChHHHHHHHHHHHHHHcCCcchh--hhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 632110 0 00111110000 012245667899999999999999999999999999 77888888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+.+.++.+.+ +.++|++||.++. ..+++
T Consensus 262 ~~i~~~i~~l~~---~~Tii~iTH~l~~i~~~~D 292 (329)
T PRK14257 262 AKIEELILELKK---KYSIIIVTHSMAQAQRISD 292 (329)
T ss_pred HHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCC
Confidence 888888887643 5799999998864 34444
No 397
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.16 E-value=3.7e-11 Score=137.00 Aligned_cols=150 Identities=16% Similarity=0.170 Sum_probs=97.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
.+..|+.++|+|++||||||++... .+++.++.. ...++.+.+++++|..+. -++.+++.-...
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~~~ 579 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWDPT 579 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCCCC
Confidence 3678999999999999999998843 334433221 123456778887776554 588888753210
Q ss_pred ------hcccchhceeeeecccc-cccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 142 ------VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 142 ------~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
......+|......... ..++.+ ..+|+|++||+.++|+++.+++++|||| +++|......+.+.++
T Consensus 580 ~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~ 659 (710)
T TIGR03796 580 IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659 (710)
T ss_pred CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 11112222211111110 112222 3589999999999999999999999999 6777777777777765
Q ss_pred HHHHhCCCcEEEEecccccHHHHH
Q 008221 209 EVLKNRPDLKLVVMSATLEAEKFQ 232 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~~~~~ 232 (573)
+ .+.++|++||.++.-..+
T Consensus 660 ~-----~~~T~IiitHrl~~i~~~ 678 (710)
T TIGR03796 660 R-----RGCTCIIVAHRLSTIRDC 678 (710)
T ss_pred h-----cCCEEEEEecCHHHHHhC
Confidence 4 278999999987543333
No 398
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.16 E-value=5.3e-11 Score=132.21 Aligned_cols=148 Identities=20% Similarity=0.299 Sum_probs=99.0
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
.+..|+.++|+|+|||||||++... .+++.++.. ...++.+.+++++|..+. -++.+++.-...
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~ 440 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAAPN 440 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCCCc
Confidence 4678999999999999999998843 334333221 122345677777776544 588888753211
Q ss_pred ------hcccchhceeeeecccccccc----cccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 142 ------VTIGEEVGYSIRFEDCSSART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 142 ------~~~~~~vg~~~~~~~~~~~~~----~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
......+|...........++ .-..+|+|++||+.++++++.+++++|||| +++|......+.+.+.+
T Consensus 441 ~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~ 520 (574)
T PRK11160 441 ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE 520 (574)
T ss_pred cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 111122232211111011123 234599999999999999999999999999 77888888888887777
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
+. ++.++|++||.++.
T Consensus 521 ~~---~~~tviiitHr~~~ 536 (574)
T PRK11160 521 HA---QNKTVLMITHRLTG 536 (574)
T ss_pred Hc---CCCEEEEEecChhH
Confidence 63 36899999998754
No 399
>PLN03211 ABC transporter G-25; Provisional
Probab=99.16 E-value=8.6e-11 Score=131.54 Aligned_cols=147 Identities=13% Similarity=0.145 Sum_probs=101.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh-------------cCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhc-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL-------------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT- 143 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll-------------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~- 143 (573)
+..|+.++|+|||||||||++..+.- ++.... ....+.+.++++++......++.+++.......
T Consensus 91 i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~-~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~ 169 (659)
T PLN03211 91 ASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT-KQILKRTGFVTQDDILYPHLTVRETLVFCSLLRL 169 (659)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc-hhhccceEEECcccccCCcCCHHHHHHHHHHhCC
Confidence 67899999999999999999885431 111111 111234667777776666788888774321100
Q ss_pred ---------------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHH
Q 008221 144 ---------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (573)
Q Consensus 144 ---------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~ 206 (573)
+...+|..... +....+..+..+|+|+++|+.++++++.++++++||| +++|......+.+.
T Consensus 170 ~~~~~~~~~~~~v~~~l~~lgL~~~~-~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~ 248 (659)
T PLN03211 170 PKSLTKQEKILVAESVISELGLTKCE-NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLT 248 (659)
T ss_pred CCCCCHHHHHHHHHHHHHHcCChhhc-CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHH
Confidence 11112211000 0000123456799999999999999999999999999 88999999999999
Q ss_pred HHHHHHhCCCcEEEEecccccH
Q 008221 207 LKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 207 l~~l~~~~~~~~iil~SATl~~ 228 (573)
++++.+. +.++|+.||.++.
T Consensus 249 L~~l~~~--g~TvI~~sH~~~~ 268 (659)
T PLN03211 249 LGSLAQK--GKTIVTSMHQPSS 268 (659)
T ss_pred HHHHHhC--CCEEEEEecCCCH
Confidence 9998653 7899999999864
No 400
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.16 E-value=4.8e-11 Score=132.57 Aligned_cols=151 Identities=22% Similarity=0.318 Sum_probs=100.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (573)
+..|+.++++|+|||||||++.. +++++.++.. ...++.+.++++.+..+. -++.+++.-...
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~a 430 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPDA 430 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCCC
Confidence 78999999999999999998872 3445544432 223456777777776655 788888854321
Q ss_pred --hcc---cchhceeeeecccc-cccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 142 --VTI---GEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 142 --~~~---~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
..+ ....+......... ..++.+ ..+|+|++||+.++|+++.+++++|||| ++.|......+.+.+++
T Consensus 431 t~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~ 510 (567)
T COG1132 431 TDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKK 510 (567)
T ss_pred CHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHH
Confidence 111 11111111111111 123333 3589999999999999999999999999 56777777778888776
Q ss_pred HHHhCCCcEEEEecccccHHHHH
Q 008221 210 VLKNRPDLKLVVMSATLEAEKFQ 232 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~~~~~ 232 (573)
+.+ ++++++++|-++.-..+
T Consensus 511 l~~---~rT~iiIaHRlsti~~a 530 (567)
T COG1132 511 LLK---GRTTLIIAHRLSTIKNA 530 (567)
T ss_pred Hhc---CCEEEEEeccHhHHHhC
Confidence 552 56888899987544333
No 401
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=1.8e-10 Score=114.46 Aligned_cols=151 Identities=19% Similarity=0.289 Sum_probs=101.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhc----------C------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~----------~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
|..|+.++|+|+|||||||++..+.-. | ..+.. ....+.+.++++.+..+...++.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl 106 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNV 106 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHH
Confidence 578999999999999999998854311 1 11110 01133467778877766667888877
Q ss_pred HHhhhh--------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
...... .....+|..... ....+..+..+|+|+++|+.++++++.+++++|||| +++|....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~ 184 (252)
T PRK14256 107 IAGYKLNGRVNRSEADEIVESSLKRVALWDEV--KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIST 184 (252)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh--hHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 532110 000111110000 011235677899999999999999999999999999 77888888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+..+++++.+ +.++|++||.++. ..+++
T Consensus 185 ~~l~~~l~~~~~---~~tiiivsH~~~~~~~~~d 215 (252)
T PRK14256 185 LKIEELIEELKE---KYTIIIVTHNMQQAARVSD 215 (252)
T ss_pred HHHHHHHHHHHh---CCcEEEEECCHHHHHhhCC
Confidence 889999998853 4689999998753 34444
No 402
>PRK13409 putative ATPase RIL; Provisional
Probab=99.15 E-value=5.2e-11 Score=131.58 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=61.5
Q ss_pred ccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.++.+..+|+|+++|+.++++++.++++++||| +++|......+..+++++.+ +..+|++||.++. ..+++
T Consensus 206 ~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~---g~tvIivsHd~~~l~~~~D 279 (590)
T PRK13409 206 LDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE---GKYVLVVEHDLAVLDYLAD 279 (590)
T ss_pred hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCC
Confidence 466788899999999999999999999999999 89999999999999998854 6899999999863 34444
No 403
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=8.9e-11 Score=116.91 Aligned_cols=151 Identities=20% Similarity=0.328 Sum_probs=100.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcC------ccCCC---hhhcCceEEEEecCcccccccHHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEG------VDIET---PDRRRKMMIACTQPRRVAAMSVSRRVA 137 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~------~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (573)
+..|+.++|+|+|||||||++..+. +++ .+... ......+.++++++......++.+++.
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~ 112 (257)
T PRK14246 33 IPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIA 112 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHH
Confidence 5689999999999999999998432 111 11100 011234677777776666678877775
Q ss_pred Hhhh---hc----c-------cchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 138 EEMD---VT----I-------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 138 ~~~~---~~----~-------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
.... .. . ...+|..... ....+..+..+|+|+++|+.++++++.+|+++++|| +++|....+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~ 190 (257)
T PRK14246 113 YPLKSHGIKEKREIKKIVEECLRKVGLWKEV--YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190 (257)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCccc--hhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHH
Confidence 3211 00 0 0111111000 012245677899999999999999999999999999 778888888
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+.+++.++.+ +.++|++||..+. ..+++
T Consensus 191 ~l~~~l~~~~~---~~tiilvsh~~~~~~~~~d 220 (257)
T PRK14246 191 AIEKLITELKN---EIAIVIVSHNPQQVARVAD 220 (257)
T ss_pred HHHHHHHHHhc---CcEEEEEECCHHHHHHhCC
Confidence 89999988742 5799999998753 24444
No 404
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.15 E-value=1.1e-10 Score=117.38 Aligned_cols=155 Identities=21% Similarity=0.304 Sum_probs=107.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh----------------hhhhcCccCCC-------hhhcCceEEEEecCccc--cccc
Q 008221 77 VLKANQVIILVGETGSGKTTQIP----------------QFVLEGVDIET-------PDRRRKMMIACTQPRRV--AAMS 131 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~----------------~~ll~~~~~~~-------~~~~~~~~i~~t~p~~~--~~~~ 131 (573)
.+..|+.++++|++|||||.... .+.+++.++-. .-+...+.++++.|--. +..+
T Consensus 32 ~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~t 111 (534)
T COG4172 32 DIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHT 111 (534)
T ss_pred eecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhH
Confidence 36789999999999999997543 23344443321 01233567788777421 2233
Q ss_pred HHHHHHH--------------hhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCc
Q 008221 132 VSRRVAE--------------EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHE 195 (573)
Q Consensus 132 v~~~v~~--------------~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~ 195 (573)
+-+.+++ .+...+...||... -....+..++.+|+|++||++++.+++.+|+++|.|| -.+
T Consensus 112 Ig~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~---p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTAL 188 (534)
T COG4172 112 IGKQLAEVLRLHRGLSRAAARARALELLELVGIPE---PEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTAL 188 (534)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc---hhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchh
Confidence 3333322 22233445566431 1123467788999999999999999999999999999 446
Q ss_pred CcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHchh
Q 008221 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGYF 235 (573)
Q Consensus 196 r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~~~ 235 (573)
|..-...++++++++.++. +..++++||++.. ..|+++.
T Consensus 189 DVtvQaQIL~Ll~~Lq~~~-gMa~lfITHDL~iVr~~ADrV 228 (534)
T COG4172 189 DVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKFADRV 228 (534)
T ss_pred hhhhHHHHHHHHHHHHHHh-CcEEEEEeccHHHHHHhhhhE
Confidence 6677788999999998876 9999999999974 5677654
No 405
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.14 E-value=7.4e-11 Score=128.71 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=62.5
Q ss_pred ccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+..+..+|+|+++|+.++++++.+++++|||| +++|......+.++++++.+. +..+|++||.++. ..+++
T Consensus 385 ~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~--~~tvi~vsHd~~~~~~~~d 459 (491)
T PRK10982 385 HRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK--DKGIIIISSEMPELLGITD 459 (491)
T ss_pred cccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC--CCEEEEECCChHHHHhhCC
Confidence 366788999999999999999999999999999 899999999999999988654 7899999999853 34444
No 406
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.14 E-value=5e-11 Score=104.09 Aligned_cols=144 Identities=19% Similarity=0.275 Sum_probs=97.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh--------------hhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF--------------VLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~--------------ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
.|.+|+++-+.||+||||||++..+ .+++..+.. +...+.++|.++.+..+..++|-+++.....
T Consensus 24 Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp 103 (213)
T COG4136 24 TIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALP 103 (213)
T ss_pred EecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecC
Confidence 4678999999999999999998732 222222211 2234568899999999999998887733221
Q ss_pred hc------------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 142 VT------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 142 ~~------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
.. ....+|.. ......+..+|+|++-|+.+.+.++..|+.++||| ..+|....+.+.+++
T Consensus 104 ~~~KG~aRr~~a~aAL~~~gL~------g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wV 177 (213)
T COG4136 104 ATLKGNARRNAANAALERSGLD------GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWV 177 (213)
T ss_pred cccccHHHHhhHHHHHHHhccc------hhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHH
Confidence 11 12233332 12245567799999999999999999999999999 334444445555544
Q ss_pred HHHHHhCCCcEEEEeccccc
Q 008221 208 KEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~ 227 (573)
-.-.... ++.+++++|+..
T Consensus 178 Fs~~r~a-giPtv~VTHD~~ 196 (213)
T COG4136 178 FSEVRAA-GIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHhc-CCCeEEEecccc
Confidence 3322222 888999999863
No 407
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.14 E-value=1.8e-10 Score=122.71 Aligned_cols=146 Identities=15% Similarity=0.177 Sum_probs=93.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhh--cCc-eEEEEecCcccccccHHHHHHHhh---hh---------
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDR--RRK-MMIACTQPRRVAAMSVSRRVAEEM---DV--------- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~--~~~-~~i~~t~p~~~~~~~v~~~v~~~~---~~--------- 142 (573)
+..|+.++|+|+|||||||++..+. +......+. ..+ ...+...+.....+++.+++.... +.
T Consensus 47 I~~GEivgIiGpNGSGKSTLLkiLa--GLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i 124 (549)
T PRK13545 47 VPEGEIVGIIGLNGSGKSTLSNLIA--GVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEII 124 (549)
T ss_pred EeCCCEEEEEcCCCCCHHHHHHHHh--CCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHH
Confidence 5789999999999999999998653 221111000 000 001111122223356666653211 10
Q ss_pred -cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEE
Q 008221 143 -TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKL 219 (573)
Q Consensus 143 -~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~i 219 (573)
.+...+|.. ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......+++.++++.+. +..+
T Consensus 125 ~elLe~lgL~------~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~--G~TI 196 (549)
T PRK13545 125 PEIIEFADIG------KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ--GKTI 196 (549)
T ss_pred HHHHHHcCCh------hHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhC--CCEE
Confidence 011111211 12345678899999999999999999999999999 788988889999999887543 7899
Q ss_pred EEecccccH-HHHHc
Q 008221 220 VVMSATLEA-EKFQG 233 (573)
Q Consensus 220 il~SATl~~-~~~~~ 233 (573)
|++||.++. ..+++
T Consensus 197 IIVSHdl~~i~~l~D 211 (549)
T PRK13545 197 FFISHSLSQVKSFCT 211 (549)
T ss_pred EEEECCHHHHHHhCC
Confidence 999998753 34443
No 408
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.14 E-value=1.3e-10 Score=116.78 Aligned_cols=153 Identities=20% Similarity=0.279 Sum_probs=100.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
.+..|+.++|+|+|||||||++..+.= .| .++.. ....+.+.++++.+..+. .++.++
T Consensus 46 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 124 (271)
T PRK14238 46 DIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDN 124 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc-ccHHHH
Confidence 367899999999999999999885431 11 11100 011234677777776554 478777
Q ss_pred HHHhhhh-cc------cchhceee-ee---cc-cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 136 VAEEMDV-TI------GEEVGYSI-RF---ED-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 136 v~~~~~~-~~------~~~vg~~~-~~---~~-~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
+...... .. ...+.... .+ +. ....+..+..+|+|+++|+.++++++.+++++|||| +++|.....
T Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~ 204 (271)
T PRK14238 125 VTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL 204 (271)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 7532110 00 00000000 00 00 012245677899999999999999999999999999 788888888
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+..+++++.+ +.++|++||.++. ..+++
T Consensus 205 ~l~~~l~~~~~---~~tiiivsH~~~~i~~~~d 234 (271)
T PRK14238 205 KVEELVQELKK---DYSIIIVTHNMQQAARISD 234 (271)
T ss_pred HHHHHHHHHHc---CCEEEEEEcCHHHHHHhCC
Confidence 89999988743 4789999998864 44444
No 409
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.14 E-value=1.5e-10 Score=129.95 Aligned_cols=147 Identities=16% Similarity=0.279 Sum_probs=105.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCCh---h----hcCceEEEEecCcccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP---D----RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~---~----~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+..|+.++++|+|||||||++..+ .+++.++... . ..+.+.++++.+..+...++.+++...
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 110 (648)
T PRK10535 31 IYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVP 110 (648)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHH
Confidence 678999999999999999999843 3333332210 0 134577888888766667877776432
Q ss_pred hhh-------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 140 MDV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 140 ~~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
... .....+|+. ...+..+..+|+|+++|+.++++++.+|+++++|| .++|....+.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~lgl~------~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~ 184 (648)
T PRK10535 111 AVYAGLERKQRLLRAQELLQRLGLE------DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVM 184 (648)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCh------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 100 011112211 22356677899999999999999999999999999 788888999999
Q ss_pred HHHHHHHHhCCCcEEEEecccccHHHHH
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEAEKFQ 232 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~~~~~ 232 (573)
++++++.+. +.+++++||..+....+
T Consensus 185 ~ll~~l~~~--g~tilivsH~~~~~~~~ 210 (648)
T PRK10535 185 AILHQLRDR--GHTVIIVTHDPQVAAQA 210 (648)
T ss_pred HHHHHHHhc--CCEEEEECCCHHHHHhC
Confidence 999987643 78999999998744333
No 410
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=1.3e-10 Score=115.93 Aligned_cols=150 Identities=18% Similarity=0.255 Sum_probs=99.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cCc------cCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EGV------DIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~~------~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.- .|. .+.. ....+.+.++++.+.... .++.+++
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 113 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFP-QSIFDNV 113 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccc-cCHHHHH
Confidence 57899999999999999999985431 111 1100 011234667777766554 4777776
Q ss_pred HHhhhhc--------------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDVT--------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~~--------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
....... ....+|..... ....+..+..+|+|+++|+.++++++.++++++||| +++|....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~ 191 (259)
T PRK14274 114 AYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV--KDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVST 191 (259)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh--hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 4321100 00111110000 012345677899999999999999999999999999 78888888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+.+.++++.+ +.++|++||.++. ..+++
T Consensus 192 ~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d 222 (259)
T PRK14274 192 RKIEELILKLKE---KYTIVIVTHNMQQAARVSD 222 (259)
T ss_pred HHHHHHHHHHhc---CCEEEEEEcCHHHHHHhCC
Confidence 899999998742 5789999998753 34444
No 411
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.14 E-value=5.4e-11 Score=135.25 Aligned_cols=147 Identities=21% Similarity=0.313 Sum_probs=92.9
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
.+..|+.++|+|+|||||||++..+ .+++.++.. ....+.+.+++++|..+ .-++.+++.-...
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF-~gTIreNI~~g~~~ 581 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLF-SGSVRENIAYGLTD 581 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcccc-ccCHHHHHhcCCCC
Confidence 3678999999999999999998833 344433221 12234577788777654 4688888753211
Q ss_pred ------hcccchhceeeeecccc-cccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 142 ------VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 142 ------~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
......+|......... ..++.+ ..+|+|++||+.++|+++++++++|||| +++|......+.+
T Consensus 582 ~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--- 658 (711)
T TIGR00958 582 TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--- 658 (711)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH---
Confidence 11112222111111110 112222 3589999999999999999999999999 5666654444444
Q ss_pred HHHHhCCCcEEEEecccccHH
Q 008221 209 EVLKNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~~ 229 (573)
....++.++|++||.++.-
T Consensus 659 --~~~~~~~TvIiItHrl~~i 677 (711)
T TIGR00958 659 --SRSRASRTVLLIAHRLSTV 677 (711)
T ss_pred --hhccCCCeEEEEeccHHHH
Confidence 1223478999999988643
No 412
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=1.3e-10 Score=115.33 Aligned_cols=144 Identities=19% Similarity=0.308 Sum_probs=96.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCCh-----hhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIETP-----DRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~~-----~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.- .| ..+... ...+.+.++++.+..+.. ++.+++
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni 106 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNV 106 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHH
Confidence 56899999999999999999985431 11 010000 112346677877665543 777766
Q ss_pred HHhh---hh------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCccc
Q 008221 137 AEEM---DV------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (573)
Q Consensus 137 ~~~~---~~------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~ 199 (573)
.... +. .....+|..... ....+..+..+|+|+++|+.++++++.+++++|||| +++|...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~ 184 (251)
T PRK14244 107 AYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL--GDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVA 184 (251)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh--hhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 4321 00 001111211000 001234567899999999999999999999999999 7888888
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 200 TDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
...+...++++. . +.++|++||.++
T Consensus 185 ~~~l~~~l~~~~-~--~~tiiiisH~~~ 209 (251)
T PRK14244 185 TNVIENLIQELK-K--NFTIIVVTHSMK 209 (251)
T ss_pred HHHHHHHHHHHh-c--CCeEEEEeCCHH
Confidence 888999998873 2 689999999875
No 413
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=2.2e-10 Score=113.83 Aligned_cols=150 Identities=19% Similarity=0.275 Sum_probs=100.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.= .| ..+.. ....+.+.++++.+.... .++.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl 105 (251)
T PRK14270 27 IYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNV 105 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHH
Confidence 56899999999999999999885431 11 11100 011234677887776555 7888777
Q ss_pred HHhhhh--------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDV--------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~--------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
...... .....+|..... ....+..+..+|+|+++|+.++++++.+++++|||| +++|....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 183 (251)
T PRK14270 106 AYGPRIHGIKDKKELDKIVEWALKKAALWDEV--KDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPIST 183 (251)
T ss_pred HhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 532110 000111110000 011345677899999999999999999999999999 78888888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+..+++++.+ +..+|++||.++. ..+++
T Consensus 184 ~~l~~~L~~~~~---~~tiiivsH~~~~~~~~~d 214 (251)
T PRK14270 184 LKIEDLMVELKK---EYTIVIVTHNMQQASRVSD 214 (251)
T ss_pred HHHHHHHHHHHh---CCeEEEEEcCHHHHHHhcC
Confidence 899999988754 3689999998753 44443
No 414
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.14 E-value=1.1e-10 Score=120.75 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=99.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
.+..|+.++|+||+||||||+.+.+ -+|+.++.. ....+.+++.|+.-..+ .=+++++++.....
T Consensus 358 ~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF-~GTIaeNIaRf~~~ 436 (580)
T COG4618 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELF-DGTIAENIARFGEE 436 (580)
T ss_pred EecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceec-CCcHHHHHHhcccc
Confidence 4678999999999999999998843 244443322 23345677887764433 35788888754311
Q ss_pred c----cc---chhce---eeeecccccccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHH
Q 008221 143 T----IG---EEVGY---SIRFEDCSSARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (573)
Q Consensus 143 ~----~~---~~vg~---~~~~~~~~~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~ 206 (573)
. +. ..-|. ..++- ...++.| ..+|+|++||+.+++++..+|.++|||| +++|.....-+.+.
T Consensus 437 ~d~~kIieAA~lAgvHelIl~lP--~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A 514 (580)
T COG4618 437 ADPEKVIEAARLAGVHELILRLP--QGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514 (580)
T ss_pred CCHHHHHHHHHHcChHHHHHhCc--CCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH
Confidence 1 00 00000 00000 0112333 2489999999999999999999999999 77877777778888
Q ss_pred HHHHHHhCCCcEEEEecccccHHH
Q 008221 207 LKEVLKNRPDLKLVVMSATLEAEK 230 (573)
Q Consensus 207 l~~l~~~~~~~~iil~SATl~~~~ 230 (573)
+..+.++ +..+|+++|-...-.
T Consensus 515 i~~~k~r--G~~vvviaHRPs~L~ 536 (580)
T COG4618 515 ILAAKAR--GGTVVVIAHRPSALA 536 (580)
T ss_pred HHHHHHc--CCEEEEEecCHHHHh
Confidence 8877655 889999999765433
No 415
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=1e-10 Score=117.75 Aligned_cols=150 Identities=21% Similarity=0.262 Sum_probs=99.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhc----------C------ccCCC----hhhcCceEEEEecCcccccccHHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLE----------G------VDIET----PDRRRKMMIACTQPRRVAAMSVSRRVA 137 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~----------~------~~~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (573)
+..|+.++|+|+|||||||++..+.-. + ..+.. ......+.++++++.... .++.+++.
T Consensus 44 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~ 122 (276)
T PRK14271 44 FPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVL 122 (276)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHH
Confidence 568999999999999999999854311 1 11100 011234667777776555 68887775
Q ss_pred Hhhhh----c---c-------cchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 138 EEMDV----T---I-------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 138 ~~~~~----~---~-------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
..... . . ...+|..... ....+..+..+|+|+++|+.++++++.+++++|||| +++|.....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~ 200 (276)
T PRK14271 123 AGVRAHKLVPRKEFRGVAQARLTEVGLWDAV--KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTE 200 (276)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHcCCCchh--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 32100 0 0 0111111000 011245577899999999999999999999999999 788888888
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+...++++.+ +.++|++||.++. ..+++
T Consensus 201 ~l~~~L~~~~~---~~tiiivsH~~~~~~~~~d 230 (276)
T PRK14271 201 KIEEFIRSLAD---RLTVIIVTHNLAQAARISD 230 (276)
T ss_pred HHHHHHHHHhc---CCEEEEEeCCHHHHHHhCC
Confidence 88898888753 4799999998863 34443
No 416
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=2.4e-11 Score=110.96 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=61.6
Q ss_pred cccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHchh
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGYF 235 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~~~ 235 (573)
++.+..+|+|++||..++..+..+.++++||| -.+|+-..-.++.+++++.... +.+++++-|+++- ..++++.
T Consensus 130 dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el-~KtiviVlHDINfAS~YsD~I 206 (252)
T COG4604 130 DRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL-GKTIVVVLHDINFASCYSDHI 206 (252)
T ss_pred HHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHh-CCeEEEEEecccHHHhhhhhe
Confidence 45667799999999999999999999999999 5677777778889999988876 8899999999873 4455543
No 417
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.14 E-value=5.8e-11 Score=132.19 Aligned_cols=148 Identities=19% Similarity=0.279 Sum_probs=97.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
.+..|+.++|+|+|||||||++... .+++.++.. ....+.+.+++++|..+. -++.+++.-...
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~ 432 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGRTE 432 (571)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCCCC
Confidence 4678999999999999999998843 233332211 122345778888876554 477777752210
Q ss_pred -------hcccchhceeeeecccc-cccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 142 -------VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 142 -------~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
......+|...-..... ..++.+ ..+|+|++||+.++|+++.++++++||| +++|......+.+.+
T Consensus 433 ~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L 512 (571)
T TIGR02203 433 QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL 512 (571)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 01122222211111110 112222 3589999999999999999999999999 788888888887777
Q ss_pred HHHHHhCCCcEEEEecccccH
Q 008221 208 KEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~~ 228 (573)
++.. ++.++|++||....
T Consensus 513 ~~~~---~~~tiIiitH~~~~ 530 (571)
T TIGR02203 513 ERLM---QGRTTLVIAHRLST 530 (571)
T ss_pred HHHh---CCCEEEEEehhhHH
Confidence 7652 36899999998754
No 418
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.14 E-value=1.5e-10 Score=114.91 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=57.5
Q ss_pred cccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+..+..+|+|+++++.++++++.+++++++|| +++|......+..+++++.+. +..+|++||.++.
T Consensus 134 ~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~--~~tIIiiSHd~~~ 201 (255)
T cd03236 134 DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED--DNYVLVVEHDLAV 201 (255)
T ss_pred cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEECCHHH
Confidence 45667899999999999999999999999999 778888888899999988654 6789999999853
No 419
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.13 E-value=7.8e-11 Score=134.17 Aligned_cols=142 Identities=24% Similarity=0.342 Sum_probs=100.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
.+..|+.++++|++||||||.+. .+++++.++.. ...+..++++.++| .+...++.+++.....
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QeP-vlF~~tI~eNI~~G~~d 453 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEP-VLFATTIRENIRYGKPD 453 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeech-hhhcccHHHHHhcCCCc
Confidence 36799999999999999999877 34566666443 22345677888888 5566789998854331
Q ss_pred ---hcccc--------------hhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 142 ---VTIGE--------------EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 142 ---~~~~~--------------~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
..+.. ..||... ..++.+ .+|+|++||++++++++.+|++|+||| +.+|......
T Consensus 454 at~~~i~~a~k~ana~~fi~~lp~g~~T~-----vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~ 527 (1228)
T KOG0055|consen 454 ATREEIEEAAKAANAHDFILKLPDGYDTL-----VGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERV 527 (1228)
T ss_pred ccHHHHHHHHHHccHHHHHHhhHHhhccc-----ccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHH
Confidence 00000 0112110 011122 399999999999999999999999999 5677787777
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccH
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+.+.|.+..+ ++++|+++|-+..
T Consensus 528 Vq~ALd~~~~---grTTivVaHRLSt 550 (1228)
T KOG0055|consen 528 VQEALDKASK---GRTTIVVAHRLST 550 (1228)
T ss_pred HHHHHHHhhc---CCeEEEEeeehhh
Confidence 8888777643 6799999998854
No 420
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1.7e-10 Score=127.04 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=95.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh------------
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD------------ 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~------------ 141 (573)
.+..|+.++|+|+|||||||+++.+.-....... ......+.++++.+......++.+++.....
T Consensus 23 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 102 (530)
T PRK15064 23 KFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRI 102 (530)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHH
Confidence 3678999999999999999999865411111000 0011235667766655555666665532100
Q ss_pred ---------------------------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEE
Q 008221 142 ---------------------------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVI 188 (573)
Q Consensus 142 ---------------------------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~l 188 (573)
......+|.. . ...+..+..+|+|+++|+.++++++.+|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~-~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lL 177 (530)
T PRK15064 103 YALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIP----E-EQHYGLMSEVAPGWKLRVLLAQALFSNPDIL 177 (530)
T ss_pred hcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC----h-hHhcCchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 0000011110 0 0112456789999999999999999999999
Q ss_pred EEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 189 VLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 189 ILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+||| +++|......+.+++++ . +..+|++||.++. ..+++
T Consensus 178 lLDEPt~~LD~~~~~~l~~~l~~----~-~~tiiivsHd~~~~~~~~d 220 (530)
T PRK15064 178 LLDEPTNNLDINTIRWLEDVLNE----R-NSTMIIISHDRHFLNSVCT 220 (530)
T ss_pred EEcCCCcccCHHHHHHHHHHHHh----C-CCeEEEEeCCHHHHHhhcc
Confidence 9999 88888888888877753 2 6789999998863 34443
No 421
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.13 E-value=5.5e-11 Score=135.53 Aligned_cols=149 Identities=23% Similarity=0.298 Sum_probs=97.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhh--
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM-- 140 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~-- 140 (573)
.+..|+.++|+|+|||||||++... .+++.++.. ...++.+++++++|..+. -++.+++.-..
T Consensus 496 ~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~~ 574 (708)
T TIGR01193 496 TIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAKE 574 (708)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCCC
Confidence 3678999999999999999998833 344433221 123456778888876554 48888875321
Q ss_pred hh---c---ccchhceeeeecccc-cccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 141 DV---T---IGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 141 ~~---~---~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
.. . .....|......... ..++.+ ..+|+|++||+.++|+++.+++++|||| +++|......+.+.+
T Consensus 575 ~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L 654 (708)
T TIGR01193 575 NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL 654 (708)
T ss_pred CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 10 1 111112110000000 012222 3589999999999999999999999999 677777777777777
Q ss_pred HHHHHhCCCcEEEEecccccHHH
Q 008221 208 KEVLKNRPDLKLVVMSATLEAEK 230 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~~~~ 230 (573)
+.+ .+.++|++||.++.-.
T Consensus 655 ~~~----~~~T~IiitHr~~~~~ 673 (708)
T TIGR01193 655 LNL----QDKTIIFVAHRLSVAK 673 (708)
T ss_pred HHh----cCCEEEEEecchHHHH
Confidence 653 2679999999886433
No 422
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.13 E-value=1.5e-10 Score=128.00 Aligned_cols=146 Identities=18% Similarity=0.178 Sum_probs=97.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh-----------
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV----------- 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~----------- 142 (573)
.+..|+.++|+|+|||||||++..+.-....... ......++++++.+.....+++.+++......
T Consensus 27 ~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~ 106 (552)
T TIGR03719 27 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEI 106 (552)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHH
Confidence 4678999999999999999999865421111000 01123467788887666667777776432100
Q ss_pred ------ccc----------------chhce---------eeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEe
Q 008221 143 ------TIG----------------EEVGY---------SIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLD 191 (573)
Q Consensus 143 ------~~~----------------~~vg~---------~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILD 191 (573)
... ..+|. ..........+..+..+|+|+++|+.++++++.++++++||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLD 186 (552)
T TIGR03719 107 SAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLD 186 (552)
T ss_pred HHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 000 00000 00000011135567889999999999999999999999999
Q ss_pred C--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 192 E--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 192 E--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
| +|+|......+.++++++ +..+|++||.++
T Consensus 187 EPt~~LD~~~~~~l~~~L~~~-----~~tvIiisHd~~ 219 (552)
T TIGR03719 187 EPTNHLDAESVAWLEQHLQEY-----PGTVVAVTHDRY 219 (552)
T ss_pred CCCCCCChHHHHHHHHHHHhC-----CCeEEEEeCCHH
Confidence 9 889888888888887764 248999999875
No 423
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=1.6e-10 Score=106.15 Aligned_cols=119 Identities=25% Similarity=0.390 Sum_probs=79.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeeccc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC 157 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~ 157 (573)
+.+|+.++|.|+|||||||++..+.-.. . .. .+- +.... ........ ..+ ...+++...
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~-~-~~----~G~-i~~~~-~~~~~~~~-~~~--------~~~i~~~~q---- 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLL-K-PT----SGE-ILIDG-KDIAKLPL-EEL--------RRRIGYVPQ---- 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC-C-CC----ccE-EEECC-EEcccCCH-HHH--------HhceEEEee----
Confidence 5689999999999999999998653211 1 11 111 11111 01110000 000 011222211
Q ss_pred ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 158 SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 158 ~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+|+|+.+++.++++++.+++++++|| +++|......+...++++... +.+++++||.++.
T Consensus 81 ---------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~--~~tii~~sh~~~~ 142 (157)
T cd00267 81 ---------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE--GRTVIIVTHDPEL 142 (157)
T ss_pred ---------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHH
Confidence 99999999999999999999999999 778888888888888887554 5799999998753
No 424
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.13 E-value=1.9e-10 Score=111.25 Aligned_cols=153 Identities=13% Similarity=0.067 Sum_probs=89.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhh-cCceEE-EEecCcccccccHHHHHHHhhhhc-c-cch-hceee
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDR-RRKMMI-ACTQPRRVAAMSVSRRVAEEMDVT-I-GEE-VGYSI 152 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~-~~~~~i-~~t~p~~~~~~~v~~~v~~~~~~~-~-~~~-vg~~~ 152 (573)
+..|++++|+|+|||||||++..+.-........-. .....+ +...+.....+++.+++....... . ... .....
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~ 89 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCY 89 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 578999999999999999999865421111000000 000000 111233344567777664321110 0 000 00000
Q ss_pred eeccc-ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH-
Q 008221 153 RFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA- 228 (573)
Q Consensus 153 ~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~- 228 (573)
..... ...+..+..+|+|+++|+.++++++.+|+++++|| ++.|......+...+.+..+ +..+|++||.+..
T Consensus 90 ~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~---~~~ii~vsH~~~~~ 166 (213)
T PRK15177 90 QLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ---QKGLIVLTHNPRLI 166 (213)
T ss_pred HHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh---CCcEEEEECCHHHH
Confidence 00011 12356778899999999999999999999999999 66676777777776654333 3468999998853
Q ss_pred HHHHc
Q 008221 229 EKFQG 233 (573)
Q Consensus 229 ~~~~~ 233 (573)
..+++
T Consensus 167 ~~~~d 171 (213)
T PRK15177 167 KEHCH 171 (213)
T ss_pred HHhcC
Confidence 33444
No 425
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.12 E-value=7.4e-11 Score=105.65 Aligned_cols=114 Identities=24% Similarity=0.367 Sum_probs=75.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhhc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (573)
+..|+.++|+|+|||||||++..+ .+++.++.. ......+.++++.+......++.++........
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~ 87 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEE 87 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHH
T ss_pred EcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 467999999999999999999832 233333222 123345777888777677777766643322222
Q ss_pred ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCC
Q 008221 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA 193 (573)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa 193 (573)
+...++... ......+.....+|+|+++|+.++++++.+++++||||.
T Consensus 88 ~l~~l~~~~--~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEP 135 (137)
T PF00005_consen 88 VLKKLGLED--LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEP 135 (137)
T ss_dssp HHHHTTHGG--GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred ccccccccc--ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 223333210 001122334488999999999999999999999999994
No 426
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.12 E-value=8.8e-11 Score=117.02 Aligned_cols=148 Identities=17% Similarity=0.231 Sum_probs=93.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (573)
+..|+.++|+|+|||||||++..+. +++.++.. ......+.++++.+.... .++.+++.....
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~ 122 (257)
T cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPECKCT 122 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCCCCC
Confidence 5689999999999999999998432 22222111 111234666676664333 355544421100
Q ss_pred ----hcccchhceeeeecc-----cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 142 ----VTIGEEVGYSIRFED-----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 142 ----~~~~~~vg~~~~~~~-----~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.......+....... ..........+|+|+++|+.++++++.+++++|+|| +++|....+.+..+++++
T Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~ 202 (257)
T cd03288 123 DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTA 202 (257)
T ss_pred HHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh
Confidence 000011111100000 011123456799999999999999999999999999 778888888888888775
Q ss_pred HHhCCCcEEEEecccccHH
Q 008221 211 LKNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~~ 229 (573)
. . +.++|++||.++.-
T Consensus 203 ~-~--~~tiii~sh~~~~~ 218 (257)
T cd03288 203 F-A--DRTVVTIAHRVSTI 218 (257)
T ss_pred c-C--CCEEEEEecChHHH
Confidence 2 2 68999999988643
No 427
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.12 E-value=2.5e-10 Score=114.72 Aligned_cols=152 Identities=20% Similarity=0.298 Sum_probs=99.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cC------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EG------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.- .| .++.. ......+.++++.+..... ++.+++
T Consensus 48 i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl 126 (272)
T PRK14236 48 IPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENV 126 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHH
Confidence 56899999999999999999885421 11 11110 0112346677776655543 777777
Q ss_pred HHhhhhc---c----cchhceeeeeccc-----ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 137 AEEMDVT---I----GEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 137 ~~~~~~~---~----~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
....... . ...+......... ...+..+..+|+|+++|+.++++++.+++++|||| +++|......
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 206 (272)
T PRK14236 127 VYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLK 206 (272)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHH
Confidence 4321100 0 0001100000000 11245667899999999999999999999999999 7888888889
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+.++++++.+ +..+|++||.++. ..+++
T Consensus 207 l~~~L~~~~~---~~tiiivtH~~~~~~~~~d 235 (272)
T PRK14236 207 IEELITELKS---KYTIVIVTHNMQQAARVSD 235 (272)
T ss_pred HHHHHHHHHh---CCeEEEEeCCHHHHHhhCC
Confidence 9999998853 4789999999853 34444
No 428
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.5e-10 Score=115.05 Aligned_cols=150 Identities=21% Similarity=0.284 Sum_probs=99.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cCc------cCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EGV------DIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~~------~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.- .|. ++.. ....+.+.++++.+..+. .++.+++
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni 107 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENV 107 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCc-ccHHHHH
Confidence 56899999999999999999986541 111 1110 011234667777766554 4777776
Q ss_pred HHhhhh-------c-------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDV-------T-------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~-------~-------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
...... . ....++..... ....+..+..+|+|+++|+.++++++.++++++||| +++|....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~ 185 (253)
T PRK14261 108 AYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV--KDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185 (253)
T ss_pred HhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh--HHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 432110 0 00011110000 011345677899999999999999999999999999 77888888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
..+.++++++.+ +.++|++||.++. ..+++
T Consensus 186 ~~l~~~l~~~~~---~~tvii~sh~~~~~~~~~d 216 (253)
T PRK14261 186 AKIEDLIEDLKK---EYTVIIVTHNMQQAARVSD 216 (253)
T ss_pred HHHHHHHHHHhh---CceEEEEEcCHHHHHhhCC
Confidence 888898888753 4689999998753 33444
No 429
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=2e-10 Score=113.94 Aligned_cols=144 Identities=22% Similarity=0.312 Sum_probs=97.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh---------c-C------ccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL---------E-G------VDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll---------~-~------~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.- + | ..+.. ....+.+.++++++..+. .++.+++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~nl 104 (250)
T PRK14266 26 IPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP-KSIFDNV 104 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc-chHHHHH
Confidence 56899999999999999999985531 1 1 11110 011235777887776555 4777776
Q ss_pred HHhhhh------c-c-------cchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 137 AEEMDV------T-I-------GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 137 ~~~~~~------~-~-------~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
...... . . ...+|...... ...+..+..+|+|+++|+.++++++.+++++++|| +++|....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~--~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~ 182 (250)
T PRK14266 105 AYGLRIHGEDDEDFIEERVEESLKAAALWDEVK--DKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPIST 182 (250)
T ss_pred HhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH--HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHH
Confidence 432110 0 0 01111110000 11245677899999999999999999999999999 77888888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
..+.++++++. . +.++|++||.++
T Consensus 183 ~~l~~~l~~~~-~--~~tiii~sh~~~ 206 (250)
T PRK14266 183 TKIEDLIHKLK-E--DYTIVIVTHNMQ 206 (250)
T ss_pred HHHHHHHHHHh-c--CCeEEEEECCHH
Confidence 88899998873 2 579999999875
No 430
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.11 E-value=1.5e-10 Score=129.48 Aligned_cols=143 Identities=17% Similarity=0.273 Sum_probs=101.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh--------------cCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL--------------EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll--------------~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (573)
+..|+.++|.||+||||||++..+.- ++.........+.++++++++.....+++.+++.......
T Consensus 48 i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~ 127 (617)
T TIGR00955 48 AKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLR 127 (617)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcC
Confidence 57899999999999999999884431 1111111112234678888887777889988874321111
Q ss_pred ----------------ccchhceeeeecccccccccc------cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCccc
Q 008221 144 ----------------IGEEVGYSIRFEDCSSARTVL------KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLA 199 (573)
Q Consensus 144 ----------------~~~~vg~~~~~~~~~~~~~~i------~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~ 199 (573)
+...+|.. ...++.+ ..+|+|+++|+.++++++.+|+++++|| .++|...
T Consensus 128 ~~~~~~~~~~~~~v~~~l~~lgL~------~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~ 201 (617)
T TIGR00955 128 MPRRVTKKEKRERVDEVLQALGLR------KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFM 201 (617)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCch------hcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHH
Confidence 11122221 1123333 3599999999999999999999999999 7889899
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
...+++.++++.+. +.++|+.+|....
T Consensus 202 ~~~l~~~L~~l~~~--g~tvi~~~hq~~~ 228 (617)
T TIGR00955 202 AYSVVQVLKGLAQK--GKTIICTIHQPSS 228 (617)
T ss_pred HHHHHHHHHHHHhC--CCEEEEEeCCCCH
Confidence 99999999998654 7889999998753
No 431
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.11 E-value=1.3e-10 Score=128.64 Aligned_cols=149 Identities=15% Similarity=0.220 Sum_probs=88.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHH----H
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVA----E 138 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~----~ 138 (573)
.+..|+.++|+|||||||||++..+ .+++.++.. ...+..+.++++.+..+. -++.++.. .
T Consensus 364 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~~~~~~~ 442 (555)
T TIGR01194 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFD-DLIGPDEGEHASL 442 (555)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhh-hhhhcccccchhH
Confidence 4678999999999999999998843 233333221 111233556665553322 12222211 1
Q ss_pred hhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH-HHHHHhCC
Q 008221 139 EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL-KEVLKNRP 215 (573)
Q Consensus 139 ~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l-~~l~~~~~ 215 (573)
+.-......++.................+|+|++||+.++++++.+++++|||| +++|......+.+.+ +.+.. .
T Consensus 443 ~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~--~ 520 (555)
T TIGR01194 443 DNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR--Q 520 (555)
T ss_pred HHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--C
Confidence 111111222222211111111111135699999999999999999999999999 677777777776544 33322 2
Q ss_pred CcEEEEecccccH
Q 008221 216 DLKLVVMSATLEA 228 (573)
Q Consensus 216 ~~~iil~SATl~~ 228 (573)
+.++|++||.++.
T Consensus 521 ~~tiiiisH~~~~ 533 (555)
T TIGR01194 521 GKTIIIISHDDQY 533 (555)
T ss_pred CCEEEEEeccHHH
Confidence 7899999998753
No 432
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.11 E-value=3.3e-10 Score=113.97 Aligned_cols=145 Identities=10% Similarity=0.169 Sum_probs=90.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChh---hcCceEEEEecCcccccccHHHHHHHhhh------hcccchh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPD---RRRKMMIACTQPRRVAAMSVSRRVAEEMD------VTIGEEV 148 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~---~~~~~~i~~t~p~~~~~~~v~~~v~~~~~------~~~~~~v 148 (573)
+..|+.++|+|+|||||||++..+. +....... ....+.++++.+.... .++.+++..... .......
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~--Gl~~p~~G~I~i~g~i~yv~q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~ 136 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLIL--GELEPSEGKIKHSGRISFSSQFSWIMP-GTIKENIIFGVSYDEYRYKSVVKAC 136 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCcEEEECCEEEEEeCcccccc-cCHHHHhhcccccCHHHHHHHHHHh
Confidence 5789999999999999999998653 22111100 0012556676655443 467766542110 0000111
Q ss_pred ceeeeecccc-----cccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH-HHHHHhCCCcEEE
Q 008221 149 GYSIRFEDCS-----SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL-KEVLKNRPDLKLV 220 (573)
Q Consensus 149 g~~~~~~~~~-----~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l-~~l~~~~~~~~ii 220 (573)
+......... .....+..+|+|+++|+.++++++.+++++|+|| +++|......++..+ +.+. . +..+|
T Consensus 137 ~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~--~~tIi 213 (282)
T cd03291 137 QLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-A--NKTRI 213 (282)
T ss_pred CCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-C--CCEEE
Confidence 1110000000 1123356799999999999999999999999999 778777777776643 4442 2 67899
Q ss_pred EecccccH
Q 008221 221 VMSATLEA 228 (573)
Q Consensus 221 l~SATl~~ 228 (573)
++||.++.
T Consensus 214 iisH~~~~ 221 (282)
T cd03291 214 LVTSKMEH 221 (282)
T ss_pred EEeCChHH
Confidence 99998764
No 433
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=2.9e-10 Score=116.13 Aligned_cols=150 Identities=18% Similarity=0.237 Sum_probs=99.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhc----------------CccCCC-----hhhcCceEEEEecCcccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLE----------------GVDIET-----PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~----------------~~~~~~-----~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+..|+.++|+|+|||||||++..+.-. +..+.. ......+.++++++.... .++.+++
T Consensus 68 i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl 146 (305)
T PRK14264 68 IPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENI 146 (305)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHH
Confidence 578999999999999999999855311 111100 011234667777765444 4777776
Q ss_pred HHhhhhc--------------------------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEE
Q 008221 137 AEEMDVT--------------------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVL 190 (573)
Q Consensus 137 ~~~~~~~--------------------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIL 190 (573)
....... ....++..... ....+..+..+|+|+++|+.++++++.+++++||
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLL 224 (305)
T PRK14264 147 SYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV--NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILM 224 (305)
T ss_pred HhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh--hHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5321100 00001100000 0112455678999999999999999999999999
Q ss_pred eC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 191 DE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 191 DE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
|| +++|......+..+|+++.+ +.++|++||.++. ..+++
T Consensus 225 DEPtsgLD~~~~~~l~~~L~~~~~---~~tiiivtH~~~~i~~~~d 267 (305)
T PRK14264 225 DEPASALDPIATSKIEDLIEELAE---EYTVVVVTHNMQQAARISD 267 (305)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCHHHHHHhcC
Confidence 99 78888888899999998754 3689999998864 44554
No 434
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2e-10 Score=107.90 Aligned_cols=149 Identities=19% Similarity=0.288 Sum_probs=101.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhh-------------hhhhcCccCCC----hhhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIP-------------QFVLEGVDIET----PDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~-------------~~ll~~~~~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
+..|++.+|.|||||||||+.. .+++++.++.. ...+.++.+.+|.|..++-+++.+.+....
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~ 106 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAM 106 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHH
Confidence 5789999999999999999987 45666666543 234557788999999999999888775443
Q ss_pred hhccc----------------chhceeeeecccccccccc-cccCHHHHHHHHhcccccCCCcEEEEeCCC--cCcccHH
Q 008221 141 DVTIG----------------EEVGYSIRFEDCSSARTVL-KYLTDGMLLREAMTDPLLERYKVIVLDEAH--ERTLATD 201 (573)
Q Consensus 141 ~~~~~----------------~~vg~~~~~~~~~~~~~~i-~~lT~G~l~r~~~~~~ll~~~~~lILDEa~--~r~~~~d 201 (573)
+...+ ..+++.. ...++.+ .-.|+|.+.|.-+...++.+|++.||||.| +|.....
T Consensus 107 n~~~~~~~~~~~~~~~~~e~~~~l~~~~-----~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk 181 (251)
T COG0396 107 NARRGARGILPEFIKELKEKAELLGLDE-----EFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALK 181 (251)
T ss_pred HhhhccccccHHHHHHHHHHHHHcCCCH-----HHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHH
Confidence 32111 1122111 1112223 247999999999998899999999999955 4433344
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccHHHHHchhC
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFY 236 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~~~~~~~~~ 236 (573)
.+-..++.+... +..++++||.- .+.+|..
T Consensus 182 ~V~~~i~~lr~~--~~~~liITHy~---rll~~i~ 211 (251)
T COG0396 182 IVAEGINALREE--GRGVLIITHYQ---RLLDYIK 211 (251)
T ss_pred HHHHHHHHHhcC--CCeEEEEecHH---HHHhhcC
Confidence 444555555433 88999999964 3445553
No 435
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=3.6e-10 Score=113.22 Aligned_cols=150 Identities=16% Similarity=0.261 Sum_probs=98.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------------cCccCC---C----hhhcCceEEEEecCcccccccHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------------EGVDIE---T----PDRRRKMMIACTQPRRVAAMSVSR 134 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------------~~~~~~---~----~~~~~~~~i~~t~p~~~~~~~v~~ 134 (573)
+..|+.++|+|+|||||||++..+.- ++.... . ......+.++++++..+.. ++.+
T Consensus 39 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~e 117 (265)
T PRK14252 39 VHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFE 117 (265)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHH
Confidence 57899999999999999999985431 111100 0 0112345677777665553 7777
Q ss_pred HHHHhhhh-----------c---ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcc
Q 008221 135 RVAEEMDV-----------T---IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTL 198 (573)
Q Consensus 135 ~v~~~~~~-----------~---~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~ 198 (573)
++...... . ....++... .-....+..+..+|+|+++|+.++++++.++++++||| +++|..
T Consensus 118 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~ 195 (265)
T PRK14252 118 NVAYGLRIRGVKRRSILEERVENALRNAALWD--EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPI 195 (265)
T ss_pred HHHhHHHHcCCChHHHHHHHHHHHHHHcCCch--hhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 76432110 0 000111100 00011245567899999999999999999999999999 788888
Q ss_pred cHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 199 ATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 199 ~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
....+.+.++++.+ +.++|++||.++. ..+++
T Consensus 196 ~~~~l~~~l~~l~~---~~tiiivth~~~~~~~~~d 228 (265)
T PRK14252 196 ATASIEELISDLKN---KVTILIVTHNMQQAARVSD 228 (265)
T ss_pred HHHHHHHHHHHHHh---CCEEEEEecCHHHHHHhCC
Confidence 88889999988743 4789999998753 33443
No 436
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.10 E-value=1.3e-10 Score=129.14 Aligned_cols=148 Identities=16% Similarity=0.221 Sum_probs=96.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
.+..|+.++|+|+|||||||++..+. +++.++.. ...++.+.+++++|..+. -++.+++.-...
T Consensus 337 ~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~ 415 (569)
T PRK10789 337 TLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGRPD 415 (569)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCCCC
Confidence 36789999999999999999987432 22222111 112345677777776554 478887743211
Q ss_pred ------hcccchhceeeeeccc-----ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 142 ------VTIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 142 ------~~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
......++........ ......-..+|+|++||+.++++++.+++++|||| +++|......+.+.++
T Consensus 416 ~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~ 495 (569)
T PRK10789 416 ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLR 495 (569)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 0011112211000000 00112234589999999999999999999999999 7788888888888887
Q ss_pred HHHHhCCCcEEEEecccccH
Q 008221 209 EVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~ 228 (573)
++. ++.++|++||.++.
T Consensus 496 ~~~---~~~tii~itH~~~~ 512 (569)
T PRK10789 496 QWG---EGRTVIISAHRLSA 512 (569)
T ss_pred HHh---CCCEEEEEecchhH
Confidence 753 37899999998753
No 437
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=2.6e-10 Score=125.54 Aligned_cols=145 Identities=18% Similarity=0.206 Sum_probs=96.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCCh-----hhcCceEEEEecCc--ccccccHHHHHHHhhh--------
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETP-----DRRRKMMIACTQPR--RVAAMSVSRRVAEEMD-------- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~-----~~~~~~~i~~t~p~--~~~~~~v~~~v~~~~~-------- 141 (573)
.+..|+.++|+|+|||||||++..+. +...... .....+.++++.+. .....++.+++.....
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLl~~i~--G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 418 (530)
T PRK15064 341 LLEAGERLAIIGENGVGKTTLLRTLV--GELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAV 418 (530)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHH
Confidence 35789999999999999999998654 2111110 11234566776653 2234667766542110
Q ss_pred hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEE
Q 008221 142 VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKL 219 (573)
Q Consensus 142 ~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~i 219 (573)
......+|.. ....+..+..+|+|+++|+.++++++.+++++|||| +++|......+.++++++ +..+
T Consensus 419 ~~~l~~~~l~-----~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~tv 488 (530)
T PRK15064 419 RGTLGRLLFS-----QDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-----EGTL 488 (530)
T ss_pred HHHHHHcCCC-----hhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC-----CCEE
Confidence 0011112210 012356788999999999999999999999999999 888888888888877764 3489
Q ss_pred EEecccccH-HHHHc
Q 008221 220 VVMSATLEA-EKFQG 233 (573)
Q Consensus 220 il~SATl~~-~~~~~ 233 (573)
|++||..+. ..+++
T Consensus 489 i~vsHd~~~~~~~~d 503 (530)
T PRK15064 489 IFVSHDREFVSSLAT 503 (530)
T ss_pred EEEeCCHHHHHHhCC
Confidence 999998853 33443
No 438
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.10 E-value=4.2e-10 Score=107.25 Aligned_cols=134 Identities=20% Similarity=0.241 Sum_probs=85.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh--hc------------------CccCCChhhcCceEEEEecCcccccccHHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV--LE------------------GVDIETPDRRRKMMIACTQPRRVAAMSVSRRVA 137 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l--l~------------------~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (573)
+..| .++|+|||||||||++..+. +. +...........+.++++.|.........+++.
T Consensus 20 ~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~ 98 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVS 98 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHH
Confidence 4567 89999999999999987432 10 000000011234567777775441110011111
Q ss_pred HhhhhcccchhceeeeecccccccccccccCHHHHHHHHhccccc----CCCcEEEEeC--CCcCcccHHHHHHHHHHHH
Q 008221 138 EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLL----ERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (573)
Q Consensus 138 ~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll----~~~~~lILDE--a~~r~~~~d~ll~~l~~l~ 211 (573)
+... . ....+..+..+|+|+++++.++++++ ..++++++|| +++|......+..+++++.
T Consensus 99 ~~l~--------~------~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~ 164 (197)
T cd03278 99 EIIE--------A------PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFS 164 (197)
T ss_pred HHHh--------C------CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 1110 0 11234567789999999999999874 5679999999 6778888888888888874
Q ss_pred HhCCCcEEEEecccccHH
Q 008221 212 KNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 212 ~~~~~~~iil~SATl~~~ 229 (573)
+ +.++|++||.++..
T Consensus 165 ~---~~tiIiitH~~~~~ 179 (197)
T cd03278 165 K---ETQFIVITHRKGTM 179 (197)
T ss_pred c---CCEEEEEECCHHHH
Confidence 3 57899999998643
No 439
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.09 E-value=3.3e-09 Score=117.31 Aligned_cols=279 Identities=19% Similarity=0.216 Sum_probs=167.6
Q ss_pred HhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 61 ~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
+..-..+|..|.-...-+..|+-..+++|||.||||....+.+--.. ...+...++||..+..|+..-.+.++...
T Consensus 77 k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~----kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 77 KATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK----KGKRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred HhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh----cCCeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 33345999999999999999999999999999999976643321111 11345678888887666544444444433
Q ss_pred hhcccchhceeeee---------cccccccccccccCHHHHHHHHhcccccC--CCcEEEEeCCCc---CcccHHHHHHH
Q 008221 141 DVTIGEEVGYSIRF---------EDCSSARTVLKYLTDGMLLREAMTDPLLE--RYKVIVLDEAHE---RTLATDVLFGL 206 (573)
Q Consensus 141 ~~~~~~~vg~~~~~---------~~~~~~~~~i~~lT~G~l~r~~~~~~ll~--~~~~lILDEa~~---r~~~~d~ll~~ 206 (573)
+ .....+.|.... +.....+-.|.+.|..-+-+-.- .+. +++++++|.+|- .+-+.|.++.+
T Consensus 153 ~-~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e---~L~~~kFdfifVDDVDA~LkaskNvDriL~L 228 (1187)
T COG1110 153 G-SLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE---ELSKLKFDFIFVDDVDAILKASKNVDRLLRL 228 (1187)
T ss_pred C-CcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHH---HhcccCCCEEEEccHHHHHhccccHHHHHHH
Confidence 3 111111122111 11112234555566655543322 133 789999999651 11222322211
Q ss_pred H-----------------------------HHHH---------HhCCCcEEEEecccccH-----HHHHchhCCCCeeee
Q 008221 207 L-----------------------------KEVL---------KNRPDLKLVVMSATLEA-----EKFQGYFYGAPLMKV 243 (573)
Q Consensus 207 l-----------------------------~~l~---------~~~~~~~iil~SATl~~-----~~~~~~~~~~~~i~v 243 (573)
+ ++.. ++.....+|++|||..+ ..|...++-. +=..
T Consensus 229 lGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFe-vG~~ 307 (1187)
T COG1110 229 LGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFE-VGSG 307 (1187)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCc-cCcc
Confidence 1 0110 11124578999999853 3454444311 0000
Q ss_pred cCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCc---HHHHHHHHHHHHHHHhhcCCCCCCeEEEEecC
Q 008221 244 PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTG---EEEIEDACRKITKEITNMGDQVGPVKVVPLYS 320 (573)
Q Consensus 244 ~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~---~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~ 320 (573)
.....+|...|...+. .+..++.+..+ .. ..|||+|. ++.++++++.|..+ ++++...|+
T Consensus 308 ~~~LRNIvD~y~~~~~---~e~~~elvk~l----G~-GgLIfV~~d~G~e~aeel~e~Lr~~---------Gi~a~~~~a 370 (1187)
T COG1110 308 GEGLRNIVDIYVESES---LEKVVELVKKL----GD-GGLIFVPIDYGREKAEELAEYLRSH---------GINAELIHA 370 (1187)
T ss_pred chhhhheeeeeccCcc---HHHHHHHHHHh----CC-CeEEEEEcHHhHHHHHHHHHHHHhc---------CceEEEeec
Confidence 0113455556655422 22233333222 22 46999999 88999999999875 899999998
Q ss_pred CCCHHHHhhhcCCCCCCCCCCCCCCceEEEee----cccccccccCCe-EEEEcCCccccee
Q 008221 321 TLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST----NIAETSLTIDGI-VYVIDPGFAKQKV 377 (573)
Q Consensus 321 ~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT----~iae~gitI~~V-~~VId~g~~k~~~ 377 (573)
. ..+.++.|..|. ..|+|.. +++-||||.|.. +|+|=+|.-|.+.
T Consensus 371 ~-----~~~~le~F~~Ge-------idvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~rf 420 (1187)
T COG1110 371 E-----KEEALEDFEEGE-------VDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFRF 420 (1187)
T ss_pred c-----chhhhhhhccCc-------eeEEEEecccccceeecCCchhheeEEEEecCCceee
Confidence 4 367789999998 8888864 578899999986 8999999986543
No 440
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.09 E-value=1.9e-10 Score=110.23 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=65.6
Q ss_pred ccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc-HHHHHch
Q 008221 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (573)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~-~~~~~~~ 234 (573)
.+.++..+|-|++.|.-++.+++++|+++.||| +++|....+.+.+.+++..+.+ +.++++.||.++ .+.+++.
T Consensus 150 lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~-~aTVllTTH~~~di~~lc~r 226 (325)
T COG4586 150 LKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER-QATVLLTTHIFDDIATLCDR 226 (325)
T ss_pred hhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhh-CceEEEEecchhhHHHhhhh
Confidence 356777899999999999999999999999999 8899999999999999998876 899999999994 5667653
No 441
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.09 E-value=1.3e-10 Score=129.44 Aligned_cols=148 Identities=18% Similarity=0.273 Sum_probs=96.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
.++.|+.++|+|+|||||||++..+. +++.++.. ....+.+.+++++|..+ .-++.+++.-...
T Consensus 362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf-~~Ti~~Ni~~~~~~ 440 (576)
T TIGR02204 362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLF-AASVMENIRYGRPD 440 (576)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccc-cccHHHHHhcCCCC
Confidence 36789999999999999999988432 23322211 11234577788777644 4577777753211
Q ss_pred ------hcccchhceeeeecccc-ccc----ccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 142 ------VTIGEEVGYSIRFEDCS-SAR----TVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 142 ------~~~~~~vg~~~~~~~~~-~~~----~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
......+|......... ..+ ..-..+|+|++||+.++|+++++++++|+|| +++|....+.+++.++
T Consensus 441 ~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~ 520 (576)
T TIGR02204 441 ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE 520 (576)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHH
Confidence 01112222211111100 011 1223589999999999999999999999999 7788787777777777
Q ss_pred HHHHhCCCcEEEEecccccH
Q 008221 209 EVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~ 228 (573)
.+. ++.++|++||..+.
T Consensus 521 ~~~---~~~t~IiitH~~~~ 537 (576)
T TIGR02204 521 TLM---KGRTTLIIAHRLAT 537 (576)
T ss_pred HHh---CCCEEEEEecchHH
Confidence 763 37899999998754
No 442
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.09 E-value=2.7e-10 Score=124.27 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=59.4
Q ss_pred ccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
.+..+..+|+|+++|+.++++++.++++++||| +++|......+.++|+++.+. .+.++|++||.++.
T Consensus 395 ~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tviivsHd~~~ 464 (490)
T PRK10938 395 ADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE-GETQLLFVSHHAED 464 (490)
T ss_pred ccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc-CCcEEEEEecchhh
Confidence 356778899999999999999999999999999 889999999999999998764 24569999999853
No 443
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.09 E-value=2.9e-10 Score=126.53 Aligned_cols=148 Identities=19% Similarity=0.229 Sum_probs=97.3
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
.+..|+.++|+|+|||||||++..+. +++.++.. ...++.+.+++++|.... .++.+++.....
T Consensus 357 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~ 435 (585)
T TIGR01192 357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGREG 435 (585)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCCCC
Confidence 36789999999999999999988432 23322211 112345677777776543 578887753211
Q ss_pred ---hc---ccchhceeeeeccc-----ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 142 ---VT---IGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 142 ---~~---~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
.. ....++........ .........+|+|++||+.++++++.+++++|||| +++|......+.+.++
T Consensus 436 ~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~ 515 (585)
T TIGR01192 436 ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAID 515 (585)
T ss_pred CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 00 01111111000000 11123345699999999999999999999999999 7888888888888887
Q ss_pred HHHHhCCCcEEEEecccccH
Q 008221 209 EVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~ 228 (573)
++. ++.++|++||..+.
T Consensus 516 ~~~---~~~tvI~isH~~~~ 532 (585)
T TIGR01192 516 ALR---KNRTTFIIAHRLST 532 (585)
T ss_pred HHh---CCCEEEEEEcChHH
Confidence 653 37899999998753
No 444
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.09 E-value=3.5e-10 Score=127.23 Aligned_cols=149 Identities=15% Similarity=0.192 Sum_probs=94.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC----hhhcCceEEEEecCcccccccHHHHHHHhh--------h---
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET----PDRRRKMMIACTQPRRVAAMSVSRRVAEEM--------D--- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--------~--- 141 (573)
.+..|+.++|+|+|||||||++..+.=.. .... ......+.+++++|..... ++.+++.... .
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~-~~~~G~i~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~ 551 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELW-PVYGGRLTKPAKGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSD 551 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEeecCCCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCH
Confidence 35689999999999999999998543110 1010 0112356778887764443 7777775321 0
Q ss_pred ---hcccchhceeeeecc---cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHh
Q 008221 142 ---VTIGEEVGYSIRFED---CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (573)
Q Consensus 142 ---~~~~~~vg~~~~~~~---~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~ 213 (573)
......+|.....+. ..........+|+|++||+.++++++.+|+++|||| +++|....+.+.+.+++
T Consensus 552 ~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---- 627 (659)
T TIGR00954 552 KDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---- 627 (659)
T ss_pred HHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----
Confidence 011112222110000 000111235799999999999999999999999999 67777777666666554
Q ss_pred CCCcEEEEecccccHHHHH
Q 008221 214 RPDLKLVVMSATLEAEKFQ 232 (573)
Q Consensus 214 ~~~~~iil~SATl~~~~~~ 232 (573)
. +.++|++||.++...++
T Consensus 628 ~-~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 628 F-GITLFSVSHRKSLWKYH 645 (659)
T ss_pred c-CCEEEEEeCchHHHHhC
Confidence 2 78999999998754443
No 445
>PLN03232 ABC transporter C family member; Provisional
Probab=99.09 E-value=1.4e-10 Score=140.99 Aligned_cols=148 Identities=19% Similarity=0.265 Sum_probs=98.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhh--
Q 008221 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM-- 140 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~-- 140 (573)
.|..|+.++|+|+|||||||++. .+.+++.++.. ...++.+.++|+.|..+. -++.+++.-..
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~~~ 1336 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFSEH 1336 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCCCC
Confidence 46789999999999999999887 34566655433 233456888898887665 37777773210
Q ss_pred -h---hcccchhceeeeecccc-cccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 141 -D---VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 141 -~---~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
. ......++......... ..++.+ ..+|+|++||+.++|+++.+++++|||| ++.|......+.+.+++
T Consensus 1337 sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232 1337 NDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 0 11112222111001100 112222 3589999999999999999999999999 66776666666666665
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
. .+++++|+++|-++.
T Consensus 1417 ~---~~~~TvI~IAHRl~t 1432 (1495)
T PLN03232 1417 E---FKSCTMLVIAHRLNT 1432 (1495)
T ss_pred H---cCCCEEEEEeCCHHH
Confidence 4 347899999998854
No 446
>PLN03130 ABC transporter C family member; Provisional
Probab=99.08 E-value=1.8e-10 Score=140.46 Aligned_cols=148 Identities=19% Similarity=0.251 Sum_probs=99.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (573)
.|..|+.++|+|+|||||||++. .+.+++.++.. ...++.+.++|+.|..+. -++.+++.-...
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~-GTIreNLd~~~~~ 1339 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFS-GTVRFNLDPFNEH 1339 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCcccc-ccHHHHhCcCCCC
Confidence 46799999999999999999887 34566666543 233456888998887665 377777732100
Q ss_pred -----hcccchhceeeeecccc-cccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 142 -----VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 142 -----~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
......++......... ..++.+ ..+|+|++||+.++|+++.++++||||| ++.|......+.+.+++
T Consensus 1340 tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130 1340 NDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred CHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 11111222110001100 112333 3589999999999999999999999999 56776666666666665
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
. ..++++|+++|-++.
T Consensus 1420 ~---~~~~TvI~IAHRL~t 1435 (1622)
T PLN03130 1420 E---FKSCTMLIIAHRLNT 1435 (1622)
T ss_pred H---CCCCEEEEEeCChHH
Confidence 4 347899999998864
No 447
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.08 E-value=1.7e-10 Score=140.50 Aligned_cols=148 Identities=19% Similarity=0.246 Sum_probs=99.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHh---
Q 008221 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEE--- 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~--- 139 (573)
.+..|+.++|+|+|||||||++. .+.++|.++.. ...++.+.++|+.|..+.. ++.+++.-.
T Consensus 1308 ~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~~~ 1386 (1522)
T TIGR00957 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFSQY 1386 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCcccCC
Confidence 36789999999999999999887 34566665543 2335568889988876654 777777410
Q ss_pred hh---hcccchhceeeeeccc-ccccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 140 MD---VTIGEEVGYSIRFEDC-SSARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 140 ~~---~~~~~~vg~~~~~~~~-~~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
.. ......++........ ...++.+ ..+|+|++|++.++|+++.++++||||| ++.|......+.+.+++
T Consensus 1387 sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957 1387 SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred CHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 00 1111222221111111 1123333 3489999999999999999999999999 56766666666666655
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
. ..++++|+++|-++.
T Consensus 1467 ~---~~~~TvI~IAHRl~t 1482 (1522)
T TIGR00957 1467 Q---FEDCTVLTIAHRLNT 1482 (1522)
T ss_pred H---cCCCEEEEEecCHHH
Confidence 3 347899999998754
No 448
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.07 E-value=7.5e-10 Score=108.05 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=58.0
Q ss_pred ccccccccCHHHHHHHHhcccccCCC--cEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 160 ARTVLKYLTDGMLLREAMTDPLLERY--KVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~--~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
.+..+..+|+|+++|+.++++++.++ +++|+|| +++|....+.++++++++.+. +..+|++||.++.
T Consensus 131 ~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~--g~tii~itH~~~~ 201 (226)
T cd03270 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDL--GNTVLVVEHDEDT 201 (226)
T ss_pred ccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhC--CCEEEEEEeCHHH
Confidence 35677889999999999999999887 5999999 778888889999999988543 7899999999864
No 449
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.07 E-value=5.6e-11 Score=105.78 Aligned_cols=145 Identities=17% Similarity=0.249 Sum_probs=92.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHh---
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEE--- 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~--- 139 (573)
++..|+.++|+||+||||||+++.+. ++|.++.. ...++.+.++.++|..+ --+|.+++-..
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf-g~tVeDNlifP~~~ 103 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF-GDTVEDNLIFPWQI 103 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc-ccchhhccccchHH
Confidence 46789999999999999999998543 33333221 11112222233333222 12333333110
Q ss_pred hh--------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 140 MD--------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 140 ~~--------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
++ ......++.. .....+.+..+|+|..|+..+.+.+...|++++||| +.+|..+...+.+++..
T Consensus 104 r~rr~dr~aa~~llar~~l~-----~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~ 178 (223)
T COG4619 104 RNRRPDRAAALDLLARFALP-----DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHR 178 (223)
T ss_pred hccCCChHHHHHHHHHcCCc-----hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHH
Confidence 00 0011111111 112346678899999999999999999999999999 66777888889999888
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
+.+.. +..+++++|+-+.
T Consensus 179 ~v~~q-~vAv~WiTHd~dq 196 (223)
T COG4619 179 YVREQ-NVAVLWITHDKDQ 196 (223)
T ss_pred Hhhhh-ceEEEEEecChHH
Confidence 87543 7899999998754
No 450
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.06 E-value=5.1e-10 Score=123.81 Aligned_cols=141 Identities=17% Similarity=0.135 Sum_probs=95.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC---hhhcCceEEEEecCc-ccccccHHHHHHHhhh---h-------
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET---PDRRRKMMIACTQPR-RVAAMSVSRRVAEEMD---V------- 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~---~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~~---~------- 142 (573)
.+..|+.++|+|+|||||||++..+.-....... ......+.++++.+. .....++.+++..... .
T Consensus 344 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 423 (552)
T TIGR03719 344 KLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPS 423 (552)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHH
Confidence 3678999999999999999999865421111000 000113566676643 3445678777754211 0
Q ss_pred -cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEE
Q 008221 143 -TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKL 219 (573)
Q Consensus 143 -~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~i 219 (573)
.....+|.. ....+..+..+|+|+++|+.++++++.+++++|||| +++|......+..+++++ .+ .+
T Consensus 424 ~~~l~~~~l~-----~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~-~v 493 (552)
T TIGR03719 424 RAYVGRFNFK-----GSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF----AG-CA 493 (552)
T ss_pred HHHHHhCCCC-----hhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC----CC-eE
Confidence 001111110 011356678899999999999999999999999999 888888888888888875 13 79
Q ss_pred EEeccccc
Q 008221 220 VVMSATLE 227 (573)
Q Consensus 220 il~SATl~ 227 (573)
|++||.++
T Consensus 494 iivsHd~~ 501 (552)
T TIGR03719 494 VVISHDRW 501 (552)
T ss_pred EEEeCCHH
Confidence 99999875
No 451
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.06 E-value=3.3e-10 Score=125.25 Aligned_cols=147 Identities=19% Similarity=0.233 Sum_probs=90.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHH---HHHh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRR---VAEE 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~---v~~~ 139 (573)
.+..|+.++|+|+|||||||++..+ .+++.++.. ...++.+.++++++..+.. ++.++ ...+
T Consensus 345 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~~~~~~ 423 (547)
T PRK10522 345 TIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPEGKPANPA 423 (547)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccccCchHHH
Confidence 3578999999999999999998843 233333221 1223456677776643321 22221 1011
Q ss_pred hhhcccchhceeeeeccccccccc--ccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCC
Q 008221 140 MDVTIGEEVGYSIRFEDCSSARTV--LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (573)
Q Consensus 140 ~~~~~~~~vg~~~~~~~~~~~~~~--i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~ 215 (573)
.-......+|...... ..+.. -..+|+|++||+.++++++.+++++|||| +++|......+.+.+.+..+. .
T Consensus 424 ~~~~~~~~~~l~~~~~---~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~-~ 499 (547)
T PRK10522 424 LVEKWLERLKMAHKLE---LEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQE-M 499 (547)
T ss_pred HHHHHHHHcCCchhhh---ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHh-C
Confidence 0011111222111000 00010 13589999999999999999999999999 778887777777777655443 2
Q ss_pred CcEEEEecccccH
Q 008221 216 DLKLVVMSATLEA 228 (573)
Q Consensus 216 ~~~iil~SATl~~ 228 (573)
+.++|++||..+.
T Consensus 500 ~~tvi~itH~~~~ 512 (547)
T PRK10522 500 GKTIFAISHDDHY 512 (547)
T ss_pred CCEEEEEEechHH
Confidence 6899999998754
No 452
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.06 E-value=5.1e-10 Score=123.82 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=97.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC---hhhcCceEEEEecC-cccccccHHHHHHHhhhhc-cc---chh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIET---PDRRRKMMIACTQP-RRVAAMSVSRRVAEEMDVT-IG---EEV- 148 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~---~~~~~~~~i~~t~p-~~~~~~~v~~~v~~~~~~~-~~---~~v- 148 (573)
+..|+.++|+|+|||||||++..+.-....... ......++++++.+ ......++.+++....... .. ...
T Consensus 347 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 426 (556)
T PRK11819 347 LPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR 426 (556)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHH
Confidence 678999999999999999999865421111000 00111356677664 3345567877775321100 00 000
Q ss_pred ceeeeecccc-cccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccc
Q 008221 149 GYSIRFEDCS-SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 225 (573)
Q Consensus 149 g~~~~~~~~~-~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SAT 225 (573)
.+...+.-.. ..+..+..+|+|+++|+.++++++.+++++|||| +++|....+.+.++++++ .+ .+|++||.
T Consensus 427 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~-tvi~vtHd 501 (556)
T PRK11819 427 AYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF----PG-CAVVISHD 501 (556)
T ss_pred HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CC-eEEEEECC
Confidence 0000111101 2356778899999999999999999999999999 788888888888888775 23 78999998
Q ss_pred cc-HHHHHc
Q 008221 226 LE-AEKFQG 233 (573)
Q Consensus 226 l~-~~~~~~ 233 (573)
++ ...+++
T Consensus 502 ~~~~~~~~d 510 (556)
T PRK11819 502 RWFLDRIAT 510 (556)
T ss_pred HHHHHHhCC
Confidence 75 234443
No 453
>PTZ00243 ABC transporter; Provisional
Probab=99.06 E-value=2.5e-10 Score=138.87 Aligned_cols=148 Identities=20% Similarity=0.237 Sum_probs=99.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhh--
Q 008221 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM-- 140 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~-- 140 (573)
.|..|+.++|+|+|||||||++. .+++++.++.. ...++.+.++|+.|..+. -++.+++.-..
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~~~~ 1410 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPFLEA 1410 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc-ccHHHHhCcccCC
Confidence 36799999999999999999887 34566665433 234567889999887665 47888773210
Q ss_pred ----hhcccchhceeeeecccc-cccccc----cccCHHHHHHHHhcccccCC-CcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 141 ----DVTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLER-YKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 141 ----~~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~-~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
-......+|......... ..++.+ ..+|+|++|++.++|+++.+ +++||||| +.+|......+.+.++
T Consensus 1411 sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243 1411 SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 011122223221111111 113333 34899999999999999985 89999999 5666666666666666
Q ss_pred HHHHhCCCcEEEEecccccH
Q 008221 209 EVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~ 228 (573)
+. ..+.++|+++|-++.
T Consensus 1491 ~~---~~~~TvI~IAHRl~t 1507 (1560)
T PTZ00243 1491 SA---FSAYTVITIAHRLHT 1507 (1560)
T ss_pred HH---CCCCEEEEEeccHHH
Confidence 54 347899999998854
No 454
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.06 E-value=2.3e-10 Score=130.06 Aligned_cols=147 Identities=19% Similarity=0.265 Sum_probs=97.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (573)
+..|+.++|+|++||||||++..+ .+++.++.. ...++.+.++++++..+. -++.+++.-...
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~~~~ 558 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCNPGA 558 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCCCCC
Confidence 578999999999999999998833 344443322 122345677777766544 578887753211
Q ss_pred --h---cccchhceeeeecccc-cccc----cccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 142 --V---TIGEEVGYSIRFEDCS-SART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 142 --~---~~~~~vg~~~~~~~~~-~~~~----~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
. ......|......... ..++ .-..+|+|++||+.++++++.+++++|||| +++|......+.+.+++
T Consensus 559 ~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~ 638 (694)
T TIGR01846 559 PFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE 638 (694)
T ss_pred CHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 0 0111112110000000 0112 234699999999999999999999999999 67787888888888877
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
+. ++.++|++||.++.
T Consensus 639 ~~---~~~t~i~itH~~~~ 654 (694)
T TIGR01846 639 IC---RGRTVIIIAHRLST 654 (694)
T ss_pred Hh---CCCEEEEEeCChHH
Confidence 63 37899999998754
No 455
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.05 E-value=7.2e-10 Score=119.72 Aligned_cols=145 Identities=23% Similarity=0.239 Sum_probs=89.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh----------h-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD----------V- 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~----------~- 142 (573)
.+..|+.++++|+||+||||+++.+.=....... ......+.++.+.+......++.+.+..... .
T Consensus 25 ~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~ 104 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEA 104 (530)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHH
Confidence 4678999999999999999999865422211111 0111245666766665555555554422110 0
Q ss_pred c--c---------------cchhceeee--------ecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCc
Q 008221 143 T--I---------------GEEVGYSIR--------FEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHE 195 (573)
Q Consensus 143 ~--~---------------~~~vg~~~~--------~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~ 195 (573)
. . ...-+|... .-.....++.+..+|+|++.|++++++++.+|++|+||| .|+
T Consensus 105 ~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHL 184 (530)
T COG0488 105 YALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHL 184 (530)
T ss_pred HHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccc
Confidence 0 0 000000000 000011156788899999999999999999999999999 787
Q ss_pred CcccHHHHHHHHHHHHHhCCCcEEEEecccc
Q 008221 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (573)
Q Consensus 196 r~~~~d~ll~~l~~l~~~~~~~~iil~SATl 226 (573)
|......+.+. ++..++ .+|++||+-
T Consensus 185 D~~~i~WLe~~----L~~~~g-tviiVSHDR 210 (530)
T COG0488 185 DLESIEWLEDY----LKRYPG-TVIVVSHDR 210 (530)
T ss_pred CHHHHHHHHHH----HHhCCC-cEEEEeCCH
Confidence 65555554444 444557 999999984
No 456
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.05 E-value=2.8e-10 Score=137.46 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=56.3
Q ss_pred cccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccHH
Q 008221 163 VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 163 ~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~~ 229 (573)
....+|+|++||+.++++++.+|++||||| +++|......+.+.++++.+.. +.++|++||.++.-
T Consensus 576 ~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~-g~TvIiIsHrls~i 643 (1466)
T PTZ00265 576 NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNE-NRITIIIAHRLSTI 643 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCHHHH
Confidence 345699999999999999999999999999 7788888888888888875432 78999999988643
No 457
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.04 E-value=3.9e-10 Score=137.08 Aligned_cols=148 Identities=22% Similarity=0.315 Sum_probs=99.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhh----------hhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHh----
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQ----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEE---- 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~---- 139 (573)
.|..|+.++|+|+|||||||++.. +++++.++.. ...++.+.++|+.|..+.. ++.+++.-.
T Consensus 1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~~~t 1319 (1490)
T TIGR01271 1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYEQWS 1319 (1490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCcccCCC
Confidence 367899999999999999998873 3445544432 2235678899999887764 787777311
Q ss_pred --hhhcccchhceeeeeccc-cccccccc----ccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 140 --MDVTIGEEVGYSIRFEDC-SSARTVLK----YLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 140 --~~~~~~~~vg~~~~~~~~-~~~~~~i~----~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.-......+|........ ...++.+. .+|+|++|++.++|+++.++++||||| ++.|......+.+.|++.
T Consensus 1320 deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~ 1399 (1490)
T TIGR01271 1320 DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQS 1399 (1490)
T ss_pred HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 011122233322111111 11233332 489999999999999999999999999 667766666666666654
Q ss_pred HHhCCCcEEEEecccccH
Q 008221 211 LKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~ 228 (573)
.+++++|+++|-++.
T Consensus 1400 ---~~~~TvI~IaHRl~t 1414 (1490)
T TIGR01271 1400 ---FSNCTVILSEHRVEA 1414 (1490)
T ss_pred ---cCCCEEEEEecCHHH
Confidence 347899999998754
No 458
>PLN03140 ABC transporter G family member; Provisional
Probab=99.04 E-value=6.9e-10 Score=133.59 Aligned_cols=144 Identities=14% Similarity=0.170 Sum_probs=101.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-------------hcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-------------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-------------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (573)
+..|+.++|.|||||||||++..+. +++.+.......+.++++++++.....+++.+.+......
T Consensus 903 i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~ 982 (1470)
T PLN03140 903 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRL 982 (1470)
T ss_pred EECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCC
Confidence 5689999999999999999998432 1111111111123467778777777778888887432110
Q ss_pred --------------cccchhceeeeeccccccccc-----ccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 143 --------------TIGEEVGYSIRFEDCSSARTV-----LKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 143 --------------~~~~~vg~~~~~~~~~~~~~~-----i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
.+...+|.. ...++. +..+|+|+++|+.++.+++.+|++++||| +++|.....
T Consensus 983 ~~~~~~~~~~~~v~~vl~~lgL~------~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~ 1056 (1470)
T PLN03140 983 PKEVSKEEKMMFVDEVMELVELD------NLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1056 (1470)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCh------hHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Confidence 011112211 111233 25799999999999999999999999999 889999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccHH
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~~ 229 (573)
.+++.++++.+. +..+|+.+|..+.+
T Consensus 1057 ~v~~~L~~l~~~--g~tVI~t~Hq~~~~ 1082 (1470)
T PLN03140 1057 IVMRTVRNTVDT--GRTVVCTIHQPSID 1082 (1470)
T ss_pred HHHHHHHHHHHC--CCEEEEEeCCCCHH
Confidence 999999998654 78999999998743
No 459
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=4.6e-10 Score=125.83 Aligned_cols=141 Identities=20% Similarity=0.161 Sum_probs=90.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCCh---hhcCceEEEEecCcc--cccccHHHHHHHhhh-------hcc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETP---DRRRKMMIACTQPRR--VAAMSVSRRVAEEMD-------VTI 144 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~---~~~~~~~i~~t~p~~--~~~~~v~~~v~~~~~-------~~~ 144 (573)
.+..|+.++|+|||||||||++..+.-........ .....++++++.+.. ....++.+.+..... ..+
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDY 413 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHH
Confidence 35789999999999999999998654211110100 001234555554311 112234443321100 001
Q ss_pred cchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEe
Q 008221 145 GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (573)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~ 222 (573)
...+|+. ....+..+..+|+|+++|+.++++++.+++++|||| +|+|......+.+.|+++ +..+|++
T Consensus 414 L~~~~l~-----~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~gtvi~v 483 (638)
T PRK10636 414 LGGFGFQ-----GDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-----EGALVVV 483 (638)
T ss_pred HHHcCCC-----hhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CCeEEEE
Confidence 1111110 012356788999999999999999999999999999 899988888888888775 2489999
Q ss_pred ccccc
Q 008221 223 SATLE 227 (573)
Q Consensus 223 SATl~ 227 (573)
||+.+
T Consensus 484 SHd~~ 488 (638)
T PRK10636 484 SHDRH 488 (638)
T ss_pred eCCHH
Confidence 99875
No 460
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.04 E-value=5.2e-10 Score=125.60 Aligned_cols=146 Identities=21% Similarity=0.207 Sum_probs=93.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC---hhhcCceEEEEecC-cccccccHHHHHHHhhh-hccc---chh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET---PDRRRKMMIACTQP-RRVAAMSVSRRVAEEMD-VTIG---EEV 148 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~---~~~~~~~~i~~t~p-~~~~~~~v~~~v~~~~~-~~~~---~~v 148 (573)
.+..|+.++|+|+|||||||++..+.-....... ......++++++.+ ......++.+++..... .... ..+
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~ 420 (635)
T PRK11147 341 QVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHV 420 (635)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHH
Confidence 4678999999999999999999865421111000 00111345566544 23445678777754211 0000 000
Q ss_pred -ceeeeeccc-ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecc
Q 008221 149 -GYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSA 224 (573)
Q Consensus 149 -g~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SA 224 (573)
.+...+.-. ...+..+..+|+|+++|+.++++++.+++++|||| .|+|....+.+..+++++ +..+|++||
T Consensus 421 ~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-----~~tvi~vSH 495 (635)
T PRK11147 421 LGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY-----QGTVLLVSH 495 (635)
T ss_pred HHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-----CCeEEEEEC
Confidence 000011110 12356788899999999999999999999999999 888888877777777654 358999999
Q ss_pred ccc
Q 008221 225 TLE 227 (573)
Q Consensus 225 Tl~ 227 (573)
..+
T Consensus 496 d~~ 498 (635)
T PRK11147 496 DRQ 498 (635)
T ss_pred CHH
Confidence 874
No 461
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.03 E-value=3.9e-10 Score=128.55 Aligned_cols=147 Identities=24% Similarity=0.337 Sum_probs=95.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
.++.|+.++++||+||||||.+. .+.+++.++.+ ...++.+.++-+.|.. ..-++.++++.....
T Consensus 1012 ~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~L-F~~TIrENI~YG~~~ 1090 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVL-FNGTIRENIAYGSEE 1090 (1228)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchh-hcccHHHHHhccCCC
Confidence 46889999999999999999776 33456655443 2334556666666654 456888888654111
Q ss_pred -cccchh---cee--eee-ccc-ccccccc----cccCHHHHHHHHhcccccCCCcEEEEeCC--CcCcccHHHHHHHHH
Q 008221 143 -TIGEEV---GYS--IRF-EDC-SSARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDEA--HERTLATDVLFGLLK 208 (573)
Q Consensus 143 -~~~~~v---g~~--~~~-~~~-~~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDEa--~~r~~~~d~ll~~l~ 208 (573)
...+.+ ... -.| .+. ...+|.+ ..+|+|++||++++|+++.+|++|+|||| .+|+.....+.+.|.
T Consensus 1091 vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd 1170 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALD 1170 (1228)
T ss_pred CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHH
Confidence 000000 000 000 000 0112333 36899999999999999999999999994 466666666667676
Q ss_pred HHHHhCCCcEEEEeccccc
Q 008221 209 EVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~ 227 (573)
+.. .++++|++.|-+.
T Consensus 1171 ~a~---~gRT~IvIAHRLS 1186 (1228)
T KOG0055|consen 1171 RAM---EGRTTIVIAHRLS 1186 (1228)
T ss_pred Hhh---cCCcEEEEecchh
Confidence 653 3689999999764
No 462
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.02 E-value=3.9e-10 Score=136.17 Aligned_cols=114 Identities=17% Similarity=0.222 Sum_probs=73.0
Q ss_pred CceEEEEecCcccccccHHHHHHHhhh----hcc---cchhceeeeecccc-cccccc----cccCHHHHHHHHhccccc
Q 008221 115 RKMMIACTQPRRVAAMSVSRRVAEEMD----VTI---GEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLL 182 (573)
Q Consensus 115 ~~~~i~~t~p~~~~~~~v~~~v~~~~~----~~~---~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll 182 (573)
+.+.+++++|..+ ..++.+++.-... ..+ ....+...-..... ..++.+ ..+|+|++||+.++|+++
T Consensus 1296 ~~i~~V~Qep~LF-~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALl 1374 (1466)
T PTZ00265 1296 NLFSIVSQEPMLF-NMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALL 1374 (1466)
T ss_pred hhccEeCCCCccc-cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHh
Confidence 3466777776554 5788888854321 010 11111110000111 112332 348999999999999999
Q ss_pred CCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccHHH
Q 008221 183 ERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEK 230 (573)
Q Consensus 183 ~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~~~ 230 (573)
.+|++||||| +++|......+.+.|.++.. .+++++|+++|-+..-.
T Consensus 1375 r~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~-~~~~TvIiIaHRlsti~ 1423 (1466)
T PTZ00265 1375 REPKILLLDEATSSLDSNSEKLIEKTIVDIKD-KADKTIITIAHRIASIK 1423 (1466)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHHhc-cCCCEEEEEechHHHHH
Confidence 9999999999 67888777778777777642 23789999999885433
No 463
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.00 E-value=8.9e-10 Score=132.90 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=101.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh--------------hcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV--------------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l--------------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
+..|+.++|+|+|||||||++..+. +++.+.. ....+.+.++++++......++.+++......
T Consensus 786 i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~ 864 (1394)
T TIGR00956 786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLR 864 (1394)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-hhhhcceeeecccccCCCCCCHHHHHHHHHHhC
Confidence 5789999999999999999988432 1221111 11223467778777667778888887532111
Q ss_pred ---------------cccchhceeeeeccccccccccc----ccCHHHHHHHHhcccccCCCc-EEEEeC--CCcCcccH
Q 008221 143 ---------------TIGEEVGYSIRFEDCSSARTVLK----YLTDGMLLREAMTDPLLERYK-VIVLDE--AHERTLAT 200 (573)
Q Consensus 143 ---------------~~~~~vg~~~~~~~~~~~~~~i~----~lT~G~l~r~~~~~~ll~~~~-~lILDE--a~~r~~~~ 200 (573)
.+...+|.. ...++.+. .+|+|+++|+.++++++.+|+ +++||| +++|....
T Consensus 865 ~~~~~~~~~~~~~v~~~l~~l~L~------~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~ 938 (1394)
T TIGR00956 865 QPKSVSKSEKMEYVEEVIKLLEME------SYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTA 938 (1394)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCh------hhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHH
Confidence 011111211 11233443 699999999999999999997 999999 88999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccHH
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~~ 229 (573)
..+.+.|+++.+. +..+|+.+|.++..
T Consensus 939 ~~i~~~L~~la~~--g~tvI~t~H~~~~~ 965 (1394)
T TIGR00956 939 WSICKLMRKLADH--GQAILCTIHQPSAI 965 (1394)
T ss_pred HHHHHHHHHHHHc--CCEEEEEecCCCHH
Confidence 9999999998654 78999999998754
No 464
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=5.7e-10 Score=116.56 Aligned_cols=150 Identities=15% Similarity=0.231 Sum_probs=94.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhh----------hhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh--
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQ----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (573)
.|..|+-|+|+|+|||||||.++. ++++|.++.. ...++.++++||.. .+-.-++..++.....
T Consensus 374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~-~LFndTIl~NI~YGn~sa 452 (591)
T KOG0057|consen 374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDS-VLFNDTILYNIKYGNPSA 452 (591)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcc-cccchhHHHHhhcCCCCc
Confidence 467899999999999999998883 4455655432 22344566666544 4444567666642211
Q ss_pred -----hcccchhceeeeecccccc-----cccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 142 -----VTIGEEVGYSIRFEDCSSA-----RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 142 -----~~~~~~vg~~~~~~~~~~~-----~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
.......|....+...... ..+=..+|+|++||+.++|+++.++.++++|| .++|......+++.+..
T Consensus 453 s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 453 SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD 532 (591)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH
Confidence 1111122222111111111 12223589999999999999999999999999 46665555556655555
Q ss_pred HHHhCCCcEEEEecccccHHH
Q 008221 210 VLKNRPDLKLVVMSATLEAEK 230 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~~~ 230 (573)
...++++|++-|.++.-.
T Consensus 533 ---~~~~rTvI~IvH~l~ll~ 550 (591)
T KOG0057|consen 533 ---VMSGRTVIMIVHRLDLLK 550 (591)
T ss_pred ---hcCCCeEEEEEecchhHh
Confidence 334789999999886433
No 465
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.00 E-value=1.6e-08 Score=116.49 Aligned_cols=115 Identities=13% Similarity=0.088 Sum_probs=92.0
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccc
Q 008221 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (573)
Q Consensus 278 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~ 357 (573)
...++|||..-...++.+...|... ++..+.+||+++..+|..+++.|.... ....-+|++|..+..
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~---------g~~y~rIdGsts~~eRq~~Id~Fn~~~----s~~~VfLLSTrAGGl 552 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR---------GYQYCRIDGNTGGEDRDASIDAFNKPG----SEKFVFLLSTRAGGL 552 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc---------CCcEEEECCCCCHHHHHHHHHHhcccc----CCceEEEEecccccc
Confidence 3458999998777777777777643 778899999999999999999995422 111457899999999
Q ss_pred ccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC---CCCeEEeccchhhhhh
Q 008221 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTEKSFNN 423 (573)
Q Consensus 358 gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~---~~G~~~~l~t~~~~~~ 423 (573)
||++...++||.|+. |=+.....|+.||+-|- ++=.+|+|+++...+.
T Consensus 553 GINLt~Ad~VIiyD~------------------dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEE 603 (1033)
T PLN03142 553 GINLATADIVILYDS------------------DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 603 (1033)
T ss_pred CCchhhCCEEEEeCC------------------CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHH
Confidence 999999999999888 77778888888888777 3457899999876643
No 466
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.99 E-value=4e-08 Score=113.80 Aligned_cols=137 Identities=18% Similarity=0.223 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCC
Q 008221 260 RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSK 339 (573)
Q Consensus 260 ~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~ 339 (573)
.++...+...+..+... .+|++|||+++...++.++..|..... ..++.++. .+.. ..|.++++.|+.+.
T Consensus 656 ~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~-----~~~~~~l~--q~~~-~~r~~ll~~F~~~~- 725 (850)
T TIGR01407 656 EEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPE-----FEGYEVLA--QGIN-GSRAKIKKRFNNGE- 725 (850)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhcc-----ccCceEEe--cCCC-ccHHHHHHHHHhCC-
Confidence 34555666666666543 568999999999999999999875311 11344333 2222 45777888888776
Q ss_pred CCCCCCceEEEeecccccccccCCeE--EEEcCCcccceeecccC-------------Ccccc--eeeeccHhhHHHhcc
Q 008221 340 EGGPPGRKIVVSTNIAETSLTIDGIV--YVIDPGFAKQKVYNPRV-------------RVESL--LVSPISKASAHQRSG 402 (573)
Q Consensus 340 ~~~~~~~kvllaT~iae~gitI~~V~--~VId~g~~k~~~~d~~~-------------~~~~l--~~~p~s~~~~~qR~G 402 (573)
..||++|+.+..|||+|+.. .||=.++ +.-+|.. +.... ...|-..-...|-+|
T Consensus 726 ------~~iLlgt~sf~EGVD~~g~~l~~viI~~L---Pf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~G 796 (850)
T TIGR01407 726 ------KAILLGTSSFWEGVDFPGNGLVCLVIPRL---PFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALG 796 (850)
T ss_pred ------CeEEEEcceeecccccCCCceEEEEEeCC---CCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhc
Confidence 78999999999999999986 4443443 3222221 00110 111444456779999
Q ss_pred ccCCCC--CCeEEec
Q 008221 403 RAGRTQ--PGKCFRL 415 (573)
Q Consensus 403 RaGR~~--~G~~~~l 415 (573)
|.=|.. .|..+-|
T Consensus 797 RlIRs~~D~G~v~il 811 (850)
T TIGR01407 797 RLIRRENDRGSIVIL 811 (850)
T ss_pred cccccCCceEEEEEE
Confidence 999983 4665533
No 467
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.98 E-value=1.8e-09 Score=97.47 Aligned_cols=142 Identities=20% Similarity=0.306 Sum_probs=94.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHh----
Q 008221 78 LKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEE---- 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~---- 139 (573)
+.+|+.++++|.|||||||+.+ .+++++..+.. ..+.+.+.++++.|.-. ++-..++.+.
T Consensus 36 L~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts--~NPRl~iGqiLd~P 113 (267)
T COG4167 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTS--LNPRLRIGQILDFP 113 (267)
T ss_pred ecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccc--cChhhhhhhHhcch
Confidence 5789999999999999999987 33444443321 12344567777776521 1111222111
Q ss_pred -----------h---hhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHH
Q 008221 140 -----------M---DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVL 203 (573)
Q Consensus 140 -----------~---~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~l 203 (573)
+ -......||... ...+-.+..++.|++||++++++++-+|+++|.|| +.+|+.-.-.+
T Consensus 114 L~l~T~~~~~~R~~~i~~TL~~VGL~P-----dhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl 188 (267)
T COG4167 114 LRLNTDLEPEQRRKQIFETLRMVGLLP-----DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQL 188 (267)
T ss_pred hhhcccCChHHHHHHHHHHHHHhccCc-----cccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHH
Confidence 1 112234455331 22345677899999999999999999999999999 45666666667
Q ss_pred HHHHHHHHHhCCCcEEEEeccccc
Q 008221 204 FGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 204 l~~l~~l~~~~~~~~iil~SATl~ 227 (573)
+.+.-++..+. +..-|.++..+.
T Consensus 189 ~NL~LeLQek~-GiSyiYV~QhlG 211 (267)
T COG4167 189 INLMLELQEKQ-GISYIYVTQHIG 211 (267)
T ss_pred HHHHHHHHHHh-CceEEEEechhh
Confidence 77777776665 888999888764
No 468
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.97 E-value=2.1e-09 Score=120.69 Aligned_cols=62 Identities=26% Similarity=0.357 Sum_probs=54.5
Q ss_pred cccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
+..+..+|+|+++|+.++++++.+|+++|||| +|+|......+..+|+++ +..+|++||...
T Consensus 151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~-----~~tvlivsHd~~ 214 (635)
T PRK11147 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF-----QGSIIFISHDRS 214 (635)
T ss_pred CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC-----CCEEEEEeCCHH
Confidence 46678899999999999999999999999999 899888888888888765 348999999875
No 469
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.97 E-value=1.2e-08 Score=106.22 Aligned_cols=121 Identities=26% Similarity=0.347 Sum_probs=90.9
Q ss_pred hcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecc
Q 008221 275 MCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI 354 (573)
Q Consensus 275 ~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~i 354 (573)
..-.+|+++|=+ ++.+|-.+...+++. ++..+..+||+||++.|..--..|.+.. ...+|+||||.
T Consensus 353 ~nlk~GDCvV~F-Skk~I~~~k~kIE~~--------g~~k~aVIYGsLPPeTr~aQA~~FNd~~-----~e~dvlVAsDA 418 (700)
T KOG0953|consen 353 SNLKPGDCVVAF-SKKDIFTVKKKIEKA--------GNHKCAVIYGSLPPETRLAQAALFNDPS-----NECDVLVASDA 418 (700)
T ss_pred ccCCCCCeEEEe-ehhhHHHHHHHHHHh--------cCcceEEEecCCCCchhHHHHHHhCCCC-----CccceEEeecc
Confidence 345688988866 577899999999875 3556889999999987655444444321 11799999999
Q ss_pred cccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCC----CCeEEeccchh
Q 008221 355 AETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ----PGKCFRLYTEK 419 (573)
Q Consensus 355 ae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~----~G~~~~l~t~~ 419 (573)
...|++.. |+=||=|.+.| |+ .-.+.+++.++..|=+|||||.+ .|.+-+|+.++
T Consensus 419 IGMGLNL~-IrRiiF~sl~K---ys------g~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 419 IGMGLNLN-IRRIIFYSLIK---YS------GRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred cccccccc-eeEEEEeeccc---CC------cccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 99999986 77777666643 33 22345999999999999999983 58888887754
No 470
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.97 E-value=1.5e-09 Score=100.51 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=94.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh-h
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-V 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-~ 142 (573)
+..|++++|+||||+||||+++... +++.+... ....+...+.|++......+++.+-+.-.+. .
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~ 103 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPH 103 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccc
Confidence 5689999999999999999998432 22222111 1112334566666554455566555432110 0
Q ss_pred cccch-------hcee-eeecccccccccccccCHHHHHHHHhcccc--cC----CCcEEEEeC--CCcCcccHHHHHHH
Q 008221 143 TIGEE-------VGYS-IRFEDCSSARTVLKYLTDGMLLREAMTDPL--LE----RYKVIVLDE--AHERTLATDVLFGL 206 (573)
Q Consensus 143 ~~~~~-------vg~~-~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l--l~----~~~~lILDE--a~~r~~~~d~ll~~ 206 (573)
..+.. ..-. .+-+-..........+|+|..||+-+++.+ +. +.++++||| +.+|.......+.+
T Consensus 104 ~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~l 183 (259)
T COG4559 104 RSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL 183 (259)
T ss_pred ccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHH
Confidence 00000 0000 000000112344567999999999999876 33 345999999 66777788888999
Q ss_pred HHHHHHhCCCcEEEEecccccH-HHHHch
Q 008221 207 LKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 207 l~~l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
.+++.+. +.-++.+-|+++. ..|++.
T Consensus 184 aR~la~~--g~~V~~VLHDLNLAA~YaDr 210 (259)
T COG4559 184 ARQLARE--GGAVLAVLHDLNLAAQYADR 210 (259)
T ss_pred HHHHHhc--CCcEEEEEccchHHHHhhhe
Confidence 9999877 6888888999974 455543
No 471
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=2.5e-09 Score=119.94 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=53.5
Q ss_pred cccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
+..+..+|+|+++|+.++++++.+|++|+||| +|+|......+..+|+++ +..+|++||...
T Consensus 144 ~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~-----~~tviivsHd~~ 207 (638)
T PRK10636 144 ERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY-----QGTLILISHDRD 207 (638)
T ss_pred cCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC-----CCeEEEEeCCHH
Confidence 55678899999999999999999999999999 898888887777776653 458999999875
No 472
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.96 E-value=1.2e-09 Score=99.82 Aligned_cols=149 Identities=17% Similarity=0.275 Sum_probs=100.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhh-----------hhhcC-ccCCC----hhhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEG-VDIET----PDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~-~~~~~----~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
.+..|+.-+++||||+||||++-. .++++ .++.+ .-.+.+++--++.|..+..+++.+++.-..
T Consensus 27 ~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~ 106 (249)
T COG4674 27 SVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELAL 106 (249)
T ss_pred EecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHh
Confidence 356799999999999999998862 33443 33222 111233445577888888899998873222
Q ss_pred h--hc-------------------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCc
Q 008221 141 D--VT-------------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERT 197 (573)
Q Consensus 141 ~--~~-------------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~ 197 (573)
+ .. +...+|.. ...+..-..+|.|++|++-+..-+..+|+++++|| |+.-.
T Consensus 107 ~~~k~v~a~L~~r~~~~e~~ride~La~igL~------~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd 180 (249)
T COG4674 107 NRDKSVFASLFARLRAEERRRIDELLATIGLG------DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTD 180 (249)
T ss_pred cCCcchHHHhhhhcChhHHHHHHHHHHHcccc------hhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcH
Confidence 1 11 11122222 11223345689999999999999999999999999 77655
Q ss_pred ccHHHHHHHHHHHHHhCCCcEEEEeccccc-HHHHHch
Q 008221 198 LATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (573)
Q Consensus 198 ~~~d~ll~~l~~l~~~~~~~~iil~SATl~-~~~~~~~ 234 (573)
..+...-++++.+.. ...++++-|+|. +..++++
T Consensus 181 ~Et~~taeLl~~la~---~hsilVVEHDM~Fvr~~A~~ 215 (249)
T COG4674 181 AETEKTAELLKSLAG---KHSILVVEHDMGFVREIADK 215 (249)
T ss_pred HHHHHHHHHHHHHhc---CceEEEEeccHHHHHHhhhe
Confidence 666677788888754 468999999996 3455543
No 473
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.94 E-value=1.7e-08 Score=111.79 Aligned_cols=90 Identities=17% Similarity=0.279 Sum_probs=61.3
Q ss_pred CCCeEEEEecCCCCHHH--HhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEE--EcCCcccceeecccCCcc
Q 008221 310 VGPVKVVPLYSTLPPAM--QQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYV--IDPGFAKQKVYNPRVRVE 385 (573)
Q Consensus 310 ~~~~~v~~lh~~l~~~~--r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~V--Id~g~~k~~~~d~~~~~~ 385 (573)
.++..++.+-++..... -+..+..|.+|+ ..|||-|.+.+-|.++|+|+.| +|.|. .-+.|..+..
T Consensus 504 FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge-------~dILiGTQmiaKG~~fp~vtLVgvl~aD~---~L~~~DfRA~ 573 (730)
T COG1198 504 FPGARIIRIDSDTTRRKGALEDLLDQFANGE-------ADILIGTQMIAKGHDFPNVTLVGVLDADT---GLGSPDFRAS 573 (730)
T ss_pred CCCCcEEEEccccccchhhHHHHHHHHhCCC-------CCeeecchhhhcCCCcccceEEEEEechh---hhcCCCcchH
Confidence 35677888877765432 356678888888 8999999999999999999866 44332 1122222111
Q ss_pred cceeeeccHhhHHHhccccCCC-CCCeEEe
Q 008221 386 SLLVSPISKASAHQRSGRAGRT-QPGKCFR 414 (573)
Q Consensus 386 ~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~ 414 (573)
--.-.-+.|=+|||||. .+|.++-
T Consensus 574 -----Er~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 574 -----ERTFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred -----HHHHHHHHHHHhhhccCCCCCeEEE
Confidence 12234577999999999 8887653
No 474
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.94 E-value=3.3e-09 Score=100.98 Aligned_cols=152 Identities=18% Similarity=0.240 Sum_probs=86.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhh-cCceEEEEecCc---ccccccHHHHHHH---hhhh---cccch
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDR-RRKMMIACTQPR---RVAAMSVSRRVAE---EMDV---TIGEE 147 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~-~~~~~i~~t~p~---~~~~~~v~~~v~~---~~~~---~~~~~ 147 (573)
+.+|+.++|+|+|||||||+++.+. +...+.... .....+.+.-.. -...++..+++.. .++. .+-..
T Consensus 50 i~~Ge~vGiiG~NGaGKSTLlklia--Gi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~ 127 (249)
T COG1134 50 IYKGERVGIIGHNGAGKSTLLKLIA--GIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEK 127 (249)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHh--CccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHH
Confidence 6789999999999999999998542 222111000 000011110000 0122334444311 1110 00011
Q ss_pred hceeeeeccc-ccccccccccCHHHHHHHHhcccccCCCcEEEEeCC--CcCcccHHHHHHHHHHHHHhCCCcEEEEecc
Q 008221 148 VGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA--HERTLATDVLFGLLKEVLKNRPDLKLVVMSA 224 (573)
Q Consensus 148 vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa--~~r~~~~d~ll~~l~~l~~~~~~~~iil~SA 224 (573)
+...+.|... ...+.++...|.||..|++.+-+.-.+|+++|+||+ --|.-........+.++.++ +..+|++||
T Consensus 128 ~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~--~~tiv~VSH 205 (249)
T COG1134 128 VDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK--NKTIVLVSH 205 (249)
T ss_pred HHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc--CCEEEEEEC
Confidence 1111111111 234677888999999999999999999999999993 22444455556666666544 689999999
Q ss_pred cccH-HHHHc
Q 008221 225 TLEA-EKFQG 233 (573)
Q Consensus 225 Tl~~-~~~~~ 233 (573)
+++. ..+|+
T Consensus 206 d~~~I~~~Cd 215 (249)
T COG1134 206 DLGAIKQYCD 215 (249)
T ss_pred CHHHHHHhcC
Confidence 9863 55654
No 475
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.93 E-value=2.2e-09 Score=115.54 Aligned_cols=152 Identities=22% Similarity=0.299 Sum_probs=97.3
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----hcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhh---------h
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD---------V 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~---------~ 142 (573)
.+..|+-+.|.|++||||||+++.+- -.|. +.-+ ......++|+.|...+- ++.+.++.... .
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~-I~~P-~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d~~l~ 491 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR-ISMP-ADSALLFLPQRPYLPQG-TLREALCYPNAAPDFSDAELV 491 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCc-eecC-CCCceEEecCCCCCCCc-cHHHHHhCCCCCCCCChHHHH
Confidence 35689999999999999999998431 1221 1111 22346788888875554 66666643221 1
Q ss_pred cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEE
Q 008221 143 TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLV 220 (573)
Q Consensus 143 ~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~ii 220 (573)
.+...||...-.+.....+.==..+|+|++||+..+|.++++|+++|||| .++|....+.++.++++ +.|+..+|
T Consensus 492 ~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~---~lp~~tvI 568 (604)
T COG4178 492 AVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE---ELPDATVI 568 (604)
T ss_pred HHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHh---hCCCCEEE
Confidence 22333443211111111111123699999999999999999999999999 45555666666666554 45799999
Q ss_pred EecccccHHHHHch
Q 008221 221 VMSATLEAEKFQGY 234 (573)
Q Consensus 221 l~SATl~~~~~~~~ 234 (573)
-++|.-....+.+.
T Consensus 569 SV~Hr~tl~~~h~~ 582 (604)
T COG4178 569 SVGHRPTLWNFHSR 582 (604)
T ss_pred EeccchhhHHHHhh
Confidence 99998766555443
No 476
>PLN03073 ABC transporter F family; Provisional
Probab=98.93 E-value=3.6e-09 Score=119.34 Aligned_cols=139 Identities=17% Similarity=0.157 Sum_probs=85.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC---hhhcCceEEEEecCcccccccHHHH----HHHhh-h------h
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRR----VAEEM-D------V 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~----v~~~~-~------~ 142 (573)
.+..|+.++|+|+|||||||+++.+.-....... ......++++++.+. ...++..+ +.... + .
T Consensus 531 ~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~~~~~~~i~ 608 (718)
T PLN03073 531 GIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV--DGLDLSSNPLLYMMRCFPGVPEQKLR 608 (718)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc--ccCCcchhHHHHHHHhcCCCCHHHHH
Confidence 3578999999999999999999865421111000 001123555665432 11122111 11100 0 0
Q ss_pred cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEE
Q 008221 143 TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLV 220 (573)
Q Consensus 143 ~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~ii 220 (573)
.....+|.. ....+..+..+|+|+++|+.++++++.+++++|||| +|+|......++..++.. +..+|
T Consensus 609 ~~L~~~gl~-----~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-----~gtvI 678 (718)
T PLN03073 609 AHLGSFGVT-----GNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-----QGGVL 678 (718)
T ss_pred HHHHHCCCC-----hHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CCEEE
Confidence 111112211 012345678899999999999999999999999999 888877777766655543 23899
Q ss_pred Eeccccc
Q 008221 221 VMSATLE 227 (573)
Q Consensus 221 l~SATl~ 227 (573)
++||.++
T Consensus 679 ivSHd~~ 685 (718)
T PLN03073 679 MVSHDEH 685 (718)
T ss_pred EEECCHH
Confidence 9999875
No 477
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.9e-09 Score=98.25 Aligned_cols=142 Identities=17% Similarity=0.203 Sum_probs=88.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC-hh-hcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PD-RRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~-~~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
.+..|+.+.|.|+|||||||+++.+. +++..+.. .. ..+.+-++--++-.-..+++.+++..-...
T Consensus 24 ~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~ 103 (209)
T COG4133 24 TLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFH 103 (209)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHh
Confidence 46789999999999999999998432 22211111 00 001111122223233456666666432211
Q ss_pred ---------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHH
Q 008221 143 ---------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (573)
Q Consensus 143 ---------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~ 211 (573)
.....||.. ...+.++.++|.|+..|+.+++-+++...+-|||| +.+|......+-.++..-.
T Consensus 104 ~~~~~~~i~~Al~~vgL~------g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~ 177 (209)
T COG4133 104 GSGNAATIWEALAQVGLA------GLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA 177 (209)
T ss_pred CCCchhhHHHHHHHcCcc------cccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHh
Confidence 111223322 23456778899999999999999999999999999 6666666666766666554
Q ss_pred HhCCCcEEEEecccc
Q 008221 212 KNRPDLKLVVMSATL 226 (573)
Q Consensus 212 ~~~~~~~iil~SATl 226 (573)
.. +--|++.||-.
T Consensus 178 ~~--GGiVllttHq~ 190 (209)
T COG4133 178 AQ--GGIVLLTTHQP 190 (209)
T ss_pred cC--CCEEEEecCCc
Confidence 43 66788888853
No 478
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.91 E-value=2.2e-09 Score=103.00 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=54.0
Q ss_pred cccccccCHHHHHH------HHhcccccCCCcEEEEeC--CCcCcccHH-HHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 161 RTVLKYLTDGMLLR------EAMTDPLLERYKVIVLDE--AHERTLATD-VLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 161 ~~~i~~lT~G~l~r------~~~~~~ll~~~~~lILDE--a~~r~~~~d-~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+..+..+|+|++++ +.++++++.+++++++|| +++|..... .+.++++++.+.. +.++|++||..+.
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~-~~~iiiitH~~~~ 185 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQK-NFQLIVITHDEEL 185 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcc-CCEEEEEEecHHH
Confidence 45667899999996 567788899999999999 677777778 8888888875532 5789999998653
No 479
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.91 E-value=1.2e-07 Score=106.97 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=66.4
Q ss_pred EEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhh-------cCCCCCC------------CCCCCC
Q 008221 283 LVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKI-------FEPAPPP------------SKEGGP 343 (573)
Q Consensus 283 LVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~-------~~~~~~g------------~~~~~~ 343 (573)
||=+++...+-.++..|..... .....+.+..+||..+...|..+ ++...+. ......
T Consensus 760 liR~anI~p~V~~A~~L~~~~~---~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~ 836 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLA---EEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPAL 836 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhcc---ccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhccccc
Confidence 6667777777777777765422 12236778999999876655432 2221100 000011
Q ss_pred CCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCC
Q 008221 344 PGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP 409 (573)
Q Consensus 344 ~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~ 409 (573)
....|+|||.|.|.|+|++-=-.+.+ |.+..+.+||+||.-|.+.
T Consensus 837 ~~~~i~v~Tqv~E~g~D~dfd~~~~~---------------------~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHDYDWAIAD---------------------PSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CCCeEEEEeeeEEEEecccCCeeeec---------------------cCcHHHHHHHhhccccccc
Confidence 23689999999999999873233333 8899999999999988853
No 480
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.91 E-value=3.5e-09 Score=117.51 Aligned_cols=147 Identities=20% Similarity=0.286 Sum_probs=103.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh--------------hhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF--------------VLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~--------------ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
+..|+.++|.||+||||||++... ++++.........+..+++.+.......++|.+.+.-....
T Consensus 53 ~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lr 132 (613)
T KOG0061|consen 53 AKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLR 132 (613)
T ss_pred EecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhc
Confidence 468999999999999999998832 33332211112233456666666678888998887322111
Q ss_pred ---------------cccchhceeeeecccccccccc-----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 143 ---------------TIGEEVGYSIRFEDCSSARTVL-----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 143 ---------------~~~~~vg~~~~~~~~~~~~~~i-----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
.+....|.. ...++.+ .-+|+|++.|+.++..++.+|.++++|| .++|+...
T Consensus 133 lp~~~~~~~k~~~V~~vi~~LgL~------~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA 206 (613)
T KOG0061|consen 133 LPSSLSKEEKRERVEEVISELGLE------KCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSA 206 (613)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCh------hhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhH
Confidence 112222222 1123333 3589999999999999999999999999 88999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccHHHHH
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQ 232 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~~~~~ 232 (573)
-.+...|+++.+. ++.||+.=|-...+.|.
T Consensus 207 ~~vv~~Lk~lA~~--grtVi~tIHQPss~lf~ 236 (613)
T KOG0061|consen 207 LQVVQLLKRLARS--GRTVICTIHQPSSELFE 236 (613)
T ss_pred HHHHHHHHHHHhC--CCEEEEEEeCCcHHHHH
Confidence 9999999999876 77788777776655443
No 481
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.90 E-value=1.7e-08 Score=95.26 Aligned_cols=159 Identities=23% Similarity=0.205 Sum_probs=94.0
Q ss_pred hcCCCChHHHHHHHHHHhcC-CEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 62 RKSLPVWQQKEEFLQVLKAN-QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 62 ~~~lp~~~~q~~~i~~i~~g-~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
.+..++++.|.++++.+..+ +.+++.|++|||||+.+..++++...... ...+++..|+...+.+..+.+....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----~~~~l~~~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-----GKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-----CCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 35677899999999999988 99999999999999977766655432110 1223444454444444555554333
Q ss_pred hhc---ccchhceeee---ecccccccccccccCHHHHHHHHhccc-ccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHh
Q 008221 141 DVT---IGEEVGYSIR---FEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKN 213 (573)
Q Consensus 141 ~~~---~~~~vg~~~~---~~~~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~ 213 (573)
... .....+.... ..........+.+.|.+.+.+...... ...+++++|+||+|.-.. ......+..+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~--~~~~~~~~~~~~~ 156 (201)
T smart00487 79 PSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLD--GGFGDQLEKLLKL 156 (201)
T ss_pred ccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhc--CCcHHHHHHHHHh
Confidence 210 0001110000 000111112677889998888776654 477889999999996332 0122222223222
Q ss_pred -CCCcEEEEeccccc
Q 008221 214 -RPDLKLVVMSATLE 227 (573)
Q Consensus 214 -~~~~~iil~SATl~ 227 (573)
.++.+++++|||..
T Consensus 157 ~~~~~~~v~~saT~~ 171 (201)
T smart00487 157 LPKNVQLLLLSATPP 171 (201)
T ss_pred CCccceEEEEecCCc
Confidence 24789999999994
No 482
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.1e-09 Score=114.30 Aligned_cols=148 Identities=22% Similarity=0.299 Sum_probs=93.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChh---hcCceEEEEecCcccccccHHHHHHHh---
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD---RRRKMMIACTQPRRVAAMSVSRRVAEE--- 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~---~~~~~~i~~t~p~~~~~~~v~~~v~~~--- 139 (573)
.+++|+.++|+|+|||||||++..+. +++.++.... .+..+.++++++..+ .-++.+|+.-.
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA~~~ 438 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF-SGTLRDNLRLANPD 438 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHH-HHHHHHHHhhcCCC
Confidence 46899999999999999999987543 3333322110 122333444444332 23555555211
Q ss_pred ----hhhcccchhceeeeecccc-cccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 140 ----MDVTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 140 ----~~~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
--......||......+.. ..++.+ .-+|+|+++|+.++|.++++..+++||| .++|......+++.+.
T Consensus 439 AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~ 518 (573)
T COG4987 439 ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF 518 (573)
T ss_pred CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHH
Confidence 1112233444332222221 112222 3489999999999999999999999999 6778888888888777
Q ss_pred HHHHhCCCcEEEEecccccH
Q 008221 209 EVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~ 228 (573)
+-.+ +.+++++||-+..
T Consensus 519 ~~~~---~kTll~vTHrL~~ 535 (573)
T COG4987 519 EHAE---GKTLLMVTHRLRG 535 (573)
T ss_pred HHhc---CCeEEEEeccccc
Confidence 6543 7899999998853
No 483
>PLN03140 ABC transporter G family member; Provisional
Probab=98.90 E-value=2.7e-09 Score=128.52 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=99.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh--------------hcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV--------------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l--------------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (573)
+..|+.++|.|||||||||+++.+. +++.........+.+.++++++.....+++.+.+.......
T Consensus 188 i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~ 267 (1470)
T PLN03140 188 IKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQ 267 (1470)
T ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhc
Confidence 4789999999999999999998432 11211111111234567777766677788888774321110
Q ss_pred -----------------------------------------------ccchhceeeeecccccccccccccCHHHHHHHH
Q 008221 144 -----------------------------------------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREA 176 (573)
Q Consensus 144 -----------------------------------------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~ 176 (573)
+...+|..... +....+..+..+|+|+++|+.
T Consensus 268 ~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~-~t~vg~~~~rglSGGerkRVs 346 (1470)
T PLN03140 268 GVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICK-DTIVGDEMIRGISGGQKKRVT 346 (1470)
T ss_pred CCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCcccc-CceeCCccccCCCcccceeee
Confidence 00011111000 000123456689999999999
Q ss_pred hcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccc
Q 008221 177 MTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (573)
Q Consensus 177 ~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl 226 (573)
++.+++.+++++++|| .++|......+...++++.+.. +.++|+.+|..
T Consensus 347 ia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~-g~Tviis~Hqp 397 (1470)
T PLN03140 347 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLT-EATVLMSLLQP 397 (1470)
T ss_pred ehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhc-CCEEEEEecCC
Confidence 9999999999999999 8899999999999999987643 67888888875
No 484
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.90 E-value=4.2e-09 Score=113.81 Aligned_cols=143 Identities=17% Similarity=0.185 Sum_probs=89.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC---hhhcCceEEEEecCcc-cccccHHHHHHHhhhh----cccchh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET---PDRRRKMMIACTQPRR-VAAMSVSRRVAEEMDV----TIGEEV 148 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~---~~~~~~~~i~~t~p~~-~~~~~v~~~v~~~~~~----~~~~~v 148 (573)
.+..|+-++|+||||+||||+++.++-....... ......+++..+.-.. ....++.+.+...... .+...+
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L 423 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYL 423 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHH
Confidence 4678999999999999999999976432221111 0111123344433212 1344677777654411 111111
Q ss_pred ceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccc
Q 008221 149 GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (573)
Q Consensus 149 g~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl 226 (573)
| ...|. .....+++..+|+|++.|++++..++.++.+||||| -|+|....+.+.+.|.. . .-.+|++||+-
T Consensus 424 ~-~f~F~-~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~----f-~Gtvl~VSHDr 496 (530)
T COG0488 424 G-RFGFT-GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD----F-EGTVLLVSHDR 496 (530)
T ss_pred H-HcCCC-hHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh----C-CCeEEEEeCCH
Confidence 1 00011 122357788999999999999999999999999999 68765555555555444 4 56899999974
No 485
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.89 E-value=1.1e-08 Score=91.86 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=61.3
Q ss_pred cccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccHH-HHHch
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE-KFQGY 234 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~~-~~~~~ 234 (573)
+..+...|+|+.||+-+++.+...|+++++|| -++|..-...++++++.+.... ++.+++++|++.+. .+++.
T Consensus 146 DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l-~la~viVTHDl~VarLla~r 221 (258)
T COG4107 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-GLAVVIVTHDLAVARLLADR 221 (258)
T ss_pred cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhc-CceEEEEechhHHHHHhhhc
Confidence 45567789999999999999999999999999 5667677788999999988776 89999999999754 34443
No 486
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.87 E-value=4.3e-09 Score=127.13 Aligned_cols=147 Identities=14% Similarity=0.164 Sum_probs=98.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhc---------------CccCCC--hhhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLE---------------GVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~---------------~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
+..|+.++|.|||||||||+++.+.-. +.+... ...++.+.++++.+.....+++.+.+....
T Consensus 84 i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~ 163 (1394)
T TIGR00956 84 IKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAA 163 (1394)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHH
Confidence 478999999999999999999854311 111000 011223566677666667788888774321
Q ss_pred hhc---------------------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCc
Q 008221 141 DVT---------------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERT 197 (573)
Q Consensus 141 ~~~---------------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~ 197 (573)
... +...+|..... +....+..+..+|+|+++|+.++++++.+++++++|| .++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~ 242 (1394)
T TIGR00956 164 RCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTR-NTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242 (1394)
T ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccccc-CceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 100 11112221000 0001123456799999999999999999999999999 88999
Q ss_pred ccHHHHHHHHHHHHHhCCCcEEEEecccc
Q 008221 198 LATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (573)
Q Consensus 198 ~~~d~ll~~l~~l~~~~~~~~iil~SATl 226 (573)
.....+.+.|+++.+.. +..+|+.+|..
T Consensus 243 ~~~~~i~~~L~~la~~~-g~tvii~~Hq~ 270 (1394)
T TIGR00956 243 ATALEFIRALKTSANIL-DTTPLVAIYQC 270 (1394)
T ss_pred HHHHHHHHHHHHHHHhc-CCEEEEEecCC
Confidence 99999999999987643 67888888875
No 487
>PLN03232 ABC transporter C family member; Provisional
Probab=98.84 E-value=7.4e-09 Score=126.27 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=91.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhh------hhcccchhc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM------DVTIGEEVG 149 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~------~~~~~~~vg 149 (573)
+..|+.++|+|++||||||++..++=+-..... ...+..+.+++++|-.+ .-++.+++.... -..+...++
T Consensus 640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf-~gTIreNI~fg~~~~~e~~~~vl~~~~ 718 (1495)
T PLN03232 640 IPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIF-NATVRENILFGSDFESERYWRAIDVTA 718 (1495)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccc-cccHHHHhhcCCccCHHHHHHHHHHhC
Confidence 578999999999999999999865432211110 11123466777666544 458888875321 111122222
Q ss_pred eeeeecccccc-cccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH-HHHHHHHhCCCcEEEE
Q 008221 150 YSIRFEDCSSA-RTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG-LLKEVLKNRPDLKLVV 221 (573)
Q Consensus 150 ~~~~~~~~~~~-~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~-~l~~l~~~~~~~~iil 221 (573)
........... ++.+ ..+|+|++||+.++|+++.++++++||| +++|......+++ .++... ++.++|+
T Consensus 719 L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l---~~kT~Il 795 (1495)
T PLN03232 719 LQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL---KGKTRVL 795 (1495)
T ss_pred CHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh---cCCEEEE
Confidence 21111111111 2222 2589999999999999999999999999 6666665554443 344322 3789999
Q ss_pred ecccccH
Q 008221 222 MSATLEA 228 (573)
Q Consensus 222 ~SATl~~ 228 (573)
+||.+..
T Consensus 796 vTH~~~~ 802 (1495)
T PLN03232 796 VTNQLHF 802 (1495)
T ss_pred EECChhh
Confidence 9998754
No 488
>PLN03130 ABC transporter C family member; Provisional
Probab=98.84 E-value=8.3e-09 Score=126.07 Aligned_cols=147 Identities=15% Similarity=0.140 Sum_probs=91.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCC-C-hhhcCceEEEEecCcccccccHHHHHHHhh------hhcccchhc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIE-T-PDRRRKMMIACTQPRRVAAMSVSRRVAEEM------DVTIGEEVG 149 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~-~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~------~~~~~~~vg 149 (573)
+..|+.++|+|++||||||++..++=+-.... . -.....+.+++++|-.+ .-++.+++.... -..+...++
T Consensus 640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lf-ngTIreNI~fg~~~d~e~y~~vl~a~~ 718 (1622)
T PLN03130 640 VPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIF-NATVRDNILFGSPFDPERYERAIDVTA 718 (1622)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccC-CCCHHHHHhCCCcccHHHHHHHHHHhC
Confidence 57899999999999999999986543221111 1 01123466677766554 458888875321 112222222
Q ss_pred eeeeecccccc-cccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH-HHHHHHHHhCCCcEEEE
Q 008221 150 YSIRFEDCSSA-RTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF-GLLKEVLKNRPDLKLVV 221 (573)
Q Consensus 150 ~~~~~~~~~~~-~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll-~~l~~l~~~~~~~~iil 221 (573)
........... ++.+ ..+|+|++||+.++|+++.++++++||| +++|......++ ..++... +++++|+
T Consensus 719 L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l---~~kTvIl 795 (1622)
T PLN03130 719 LQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL---RGKTRVL 795 (1622)
T ss_pred cHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh---cCCEEEE
Confidence 22111111111 2222 3589999999999999999999999999 566655554443 3444432 3789999
Q ss_pred ecccccH
Q 008221 222 MSATLEA 228 (573)
Q Consensus 222 ~SATl~~ 228 (573)
+||.+..
T Consensus 796 VTH~l~~ 802 (1622)
T PLN03130 796 VTNQLHF 802 (1622)
T ss_pred EECCHhH
Confidence 9998754
No 489
>PLN03073 ABC transporter F family; Provisional
Probab=98.83 E-value=8.9e-09 Score=116.18 Aligned_cols=62 Identities=24% Similarity=0.223 Sum_probs=54.8
Q ss_pred cccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
+..+..+|+|+++|+.++++++.+|++++||| +|+|......+..+++++ +..+|++||..+
T Consensus 339 ~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~~tviivsHd~~ 402 (718)
T PLN03073 339 VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-----PKTFIVVSHARE 402 (718)
T ss_pred hCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc-----CCEEEEEECCHH
Confidence 45677899999999999999999999999999 899888888888888775 568999999875
No 490
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.81 E-value=1.3e-08 Score=124.30 Aligned_cols=150 Identities=11% Similarity=0.112 Sum_probs=94.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCCh-hhcCceEEEEecCcccccccHHHHHHHhhh------hcccchhce
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETP-DRRRKMMIACTQPRRVAAMSVSRRVAEEMD------VTIGEEVGY 150 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~-~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~------~~~~~~vg~ 150 (573)
+..|+.++|+|++||||||++..++-.-...... .....+.+++++|.. ...++.+++..... ..+...++.
T Consensus 661 i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l-~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l 739 (1522)
T TIGR00957 661 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWI-QNDSLRENILFGKALNEKYYQQVLEACAL 739 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccc-cCCcHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 5689999999999999999998664321111110 001235677777654 44688887753211 011111111
Q ss_pred eeeeccc-----ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEec
Q 008221 151 SIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (573)
Q Consensus 151 ~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~S 223 (573)
....... .........+|+|+++|+.++++++.++++++||| +++|......+++.+........+.++|++|
T Consensus 740 ~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvT 819 (1522)
T TIGR00957 740 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVT 819 (1522)
T ss_pred HHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEe
Confidence 1001111 11123445699999999999999999999999999 6777777777776665432222367999999
Q ss_pred ccccH
Q 008221 224 ATLEA 228 (573)
Q Consensus 224 ATl~~ 228 (573)
|.++.
T Consensus 820 H~~~~ 824 (1522)
T TIGR00957 820 HGISY 824 (1522)
T ss_pred CChhh
Confidence 98754
No 491
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.81 E-value=2.6e-08 Score=98.61 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=59.1
Q ss_pred cccccccCHHHHHHHHhcccccCC---CcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccHHHHHc
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLER---YKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQG 233 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~---~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~~~~~~ 233 (573)
+..+..+|+|+++|+.++++++.+ ++++|||| +++|......++++++++.+. +..+|++||.++.-..++
T Consensus 164 ~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~--g~tvIiitH~~~~i~~aD 239 (261)
T cd03271 164 GQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK--GNTVVVIEHNLDVIKCAD 239 (261)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHhCC
Confidence 456678999999999999999875 79999999 788888999999999988654 789999999986443333
No 492
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.78 E-value=4.2e-09 Score=101.57 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=53.6
Q ss_pred cccccccCHHHHHHHHhccccc----CCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccHHHH
Q 008221 161 RTVLKYLTDGMLLREAMTDPLL----ERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKF 231 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll----~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~~~~ 231 (573)
++.+..+|+|+++++.++++++ ..++++++|| +++|......+.+.++++. .+.++|++||..+...+
T Consensus 122 ~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~---~~~~~iivs~~~~~~~~ 195 (212)
T cd03274 122 WKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT---KNAQFIVISLRNNMFEL 195 (212)
T ss_pred ccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc---CCCEEEEEECcHHHHHh
Confidence 4567789999999999999884 3579999999 6778888888888888863 25789999987543333
No 493
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.78 E-value=1.5e-08 Score=98.00 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=53.8
Q ss_pred cccccccCHHHHHHHHhcccccC----------CCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLE----------RYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~----------~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
+..+..+|+|+.+++.++++++. +++++++|| +++|......+...++++.+. +..+|++||.++
T Consensus 118 ~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~--~~tii~itH~~~ 194 (213)
T cd03279 118 ARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE--NRMVGVISHVEE 194 (213)
T ss_pred cCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEECchH
Confidence 45667899999999999999853 578999999 677878888888888887543 679999999875
No 494
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.76 E-value=1.1e-08 Score=118.39 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=105.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCC--h--hhcCceEEEEecCcccccccHHHHH---HH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--P--DRRRKMMIACTQPRRVAAMSVSRRV---AE 138 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~--~--~~~~~~~i~~t~p~~~~~~~v~~~v---~~ 138 (573)
.+..|+..++.|+|||||||.+..+. +.+.+... . ...+.++++|+.......++..+.+ +.
T Consensus 587 ~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~ar 666 (885)
T KOG0059|consen 587 AVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYAR 666 (885)
T ss_pred EecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHH
Confidence 36789999999999999999998322 22222211 0 1233466667665555555555544 22
Q ss_pred hhhh---cccchhceeee-ecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHH
Q 008221 139 EMDV---TIGEEVGYSIR-FEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLK 212 (573)
Q Consensus 139 ~~~~---~~~~~vg~~~~-~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~ 212 (573)
-.|. .+...+....+ +.-....++++..+|+|++.|+..+-+++.+|++++||| ++.|+.....+..++.++.+
T Consensus 667 lrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k 746 (885)
T KOG0059|consen 667 LRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK 746 (885)
T ss_pred HcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh
Confidence 2221 11111111110 111134466788999999999999999999999999999 88999999999999999987
Q ss_pred hCCCcEEEEecccccH-HHHHchh
Q 008221 213 NRPDLKLVVMSATLEA-EKFQGYF 235 (573)
Q Consensus 213 ~~~~~~iil~SATl~~-~~~~~~~ 235 (573)
. +.-+|+.||.|+. +.+++..
T Consensus 747 ~--g~aiiLTSHsMeE~EaLCtR~ 768 (885)
T KOG0059|consen 747 N--GKAIILTSHSMEEAEALCTRT 768 (885)
T ss_pred c--CCEEEEEcCCHHHHHHHhhhh
Confidence 5 3499999999964 6676543
No 495
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=8.7e-09 Score=106.90 Aligned_cols=139 Identities=22% Similarity=0.210 Sum_probs=81.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhhc-----------cc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT-----------IG 145 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~-----------~~ 145 (573)
+..|+-.+++|+||+||||+++-+.-.+...-+ .+..++.-+...+.-......+.+.+.++.... +.
T Consensus 103 L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L 182 (582)
T KOG0062|consen 103 LSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKIL 182 (582)
T ss_pred eecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHH
Confidence 567899999999999999999865442222111 000001000000000011112222222221111 11
Q ss_pred chhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEec
Q 008221 146 EEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (573)
Q Consensus 146 ~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~S 223 (573)
..+|+.. ......+..+|+|.+.|+.+++|++.+|++|+||| -|+|..+...+...|.. . ..+++++|
T Consensus 183 ~glGFt~-----emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t----~-~~T~liVS 252 (582)
T KOG0062|consen 183 AGLGFTP-----EMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQT----W-KITSLIVS 252 (582)
T ss_pred HhCCCCH-----HHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhh----C-CceEEEEe
Confidence 2233321 11235567899999999999999999999999999 67776666666555554 4 47999999
Q ss_pred ccc
Q 008221 224 ATL 226 (573)
Q Consensus 224 ATl 226 (573)
|+-
T Consensus 253 HDr 255 (582)
T KOG0062|consen 253 HDR 255 (582)
T ss_pred ccH
Confidence 974
No 496
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.75 E-value=2.7e-08 Score=121.24 Aligned_cols=148 Identities=14% Similarity=0.172 Sum_probs=94.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCCh-hhcCceEEEEecCcccccccHHHHHHHhhh------hcccchhce
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETP-DRRRKMMIACTQPRRVAAMSVSRRVAEEMD------VTIGEEVGY 150 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~-~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~------~~~~~~vg~ 150 (573)
+..|+.++|+|||||||||++..++-.-...... .....+.+++++|.... .++.+++..... ..+....+.
T Consensus 449 i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~-~Ti~eNI~~g~~~~~~~~~~~~~~~~L 527 (1490)
T TIGR01271 449 LEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMP-GTIKDNIIFGLSYDEYRYTSVIKACQL 527 (1490)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCC-ccHHHHHHhccccchHHHHHHHHHHhH
Confidence 5689999999999999999998664221111110 00113567777776554 488887753211 011111111
Q ss_pred eeeecc-----cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHH-HHHHHHhCCCcEEEEe
Q 008221 151 SIRFED-----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL-LKEVLKNRPDLKLVVM 222 (573)
Q Consensus 151 ~~~~~~-----~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~-l~~l~~~~~~~~iil~ 222 (573)
...... ..........+|+|+++|+.++++++.++++++||| +.+|......+++. ++.+. .+.++|++
T Consensus 528 ~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~---~~~tvilv 604 (1490)
T TIGR01271 528 EEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM---SNKTRILV 604 (1490)
T ss_pred HHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCCeEEEE
Confidence 100000 011123356799999999999999999999999999 67777777777763 45443 27899999
Q ss_pred cccccHH
Q 008221 223 SATLEAE 229 (573)
Q Consensus 223 SATl~~~ 229 (573)
||.++.-
T Consensus 605 tH~~~~~ 611 (1490)
T TIGR01271 605 TSKLEHL 611 (1490)
T ss_pred eCChHHH
Confidence 9998643
No 497
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.74 E-value=2.7e-08 Score=87.58 Aligned_cols=134 Identities=22% Similarity=0.356 Sum_probs=78.6
Q ss_pred hcCCEEEEEcCCCCchhhh-hhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeec-c
Q 008221 79 KANQVIILVGETGSGKTTQ-IPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFE-D 156 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~-l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~-~ 156 (573)
.+|+..+|--.+|||||+- +|+++.+... ++..++...|.+..+ +++.+.+... .+.+..... .
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva----~em~~aL~~~---~~~~~t~~~~~ 67 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVA----EEMYEALKGL---PVRFHTNARMR 67 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHH----HHHHHHTTTS---SEEEESTTSS-
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHH----HHHHHHHhcC---CcccCceeeec
Confidence 4688899999999999995 6676665443 123344555555443 4444333211 111111111 1
Q ss_pred cccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 157 CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 157 ~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
.......|..++.+-.-+.++...-+.+++++|+||+|--+...-.+...++++... .+.++|+||||.+
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPP 137 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPP 137 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-T
T ss_pred cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCC
Confidence 122345667788888777776655589999999999997555555667778887655 3679999999975
No 498
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.72 E-value=1.2e-08 Score=102.66 Aligned_cols=62 Identities=26% Similarity=0.311 Sum_probs=53.5
Q ss_pred cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 165 KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 165 ~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
..+|.|++.|+.+-.+++.+-+++|+|| ||.|+.....+...+--.++.. +.+++.+||+-.
T Consensus 447 ~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~q-GKTI~aIsHDd~ 510 (546)
T COG4615 447 LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQ-GKTIFAISHDDH 510 (546)
T ss_pred cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHh-CCeEEEEecCch
Confidence 4589999999999999999999999999 8999999888877766666654 899999999853
No 499
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.71 E-value=2.4e-08 Score=104.98 Aligned_cols=154 Identities=19% Similarity=0.255 Sum_probs=87.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhh----hhhcCccCCChhh--cCceEEEEecCcccccccHHHHHHH------------
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQ----FVLEGVDIETPDR--RRKMMIACTQPRRVAAMSVSRRVAE------------ 138 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~----~ll~~~~~~~~~~--~~~~~i~~t~p~~~~~~~v~~~v~~------------ 138 (573)
.+.+|+.+.|+||||||||.+++- |-..+..+..... ...+.++|++|-...- ++.+.+--
T Consensus 457 ~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~ 535 (659)
T KOG0060|consen 457 EVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSA 535 (659)
T ss_pred EecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCcccc-chhheeeccCccccccccCC
Confidence 467899999999999999999983 2222222222111 2457788888743211 22222200
Q ss_pred --hhhhcccchhcee---eeecccc--cccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHH
Q 008221 139 --EMDVTIGEEVGYS---IRFEDCS--SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVL 211 (573)
Q Consensus 139 --~~~~~~~~~vg~~---~~~~~~~--~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~ 211 (573)
+.-.+..+.++.. .+.+... ....=-.++|+|++||+.+||-+..+|++-||||+-- ..+..+...+-+.+
T Consensus 536 ~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TS--Av~~dvE~~~Yr~~ 613 (659)
T KOG0060|consen 536 SDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTS--AVTEDVEGALYRKC 613 (659)
T ss_pred CHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhh--hccHHHHHHHHHHH
Confidence 0001111111111 0111111 0001123689999999999999999999999999431 22223333333333
Q ss_pred HhCCCcEEEEecccccHHHHHch
Q 008221 212 KNRPDLKLVVMSATLEAEKFQGY 234 (573)
Q Consensus 212 ~~~~~~~iil~SATl~~~~~~~~ 234 (573)
++. +.+.|-+||--..+++-+|
T Consensus 614 r~~-giT~iSVgHRkSL~kfHd~ 635 (659)
T KOG0060|consen 614 REM-GITFISVGHRKSLWKFHDY 635 (659)
T ss_pred HHc-CCeEEEeccHHHHHhhhhE
Confidence 333 8999999998777776655
No 500
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.70 E-value=9.1e-08 Score=91.31 Aligned_cols=68 Identities=18% Similarity=0.145 Sum_probs=54.3
Q ss_pred ccccccccCHHHHHHHHhcccc----cCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCC-CcEEEEeccccc
Q 008221 160 ARTVLKYLTDGMLLREAMTDPL----LERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLE 227 (573)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~l----l~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~-~~~iil~SATl~ 227 (573)
.+..+..+|.|+++++.++.++ +.+++++|+|| +++|......+.++++++..... +..+++.||.++
T Consensus 103 ~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~ 177 (198)
T cd03276 103 AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS 177 (198)
T ss_pred cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc
Confidence 3567778999999999999887 68999999999 77788888888888888754322 346777778875
Done!