Query 008221
Match_columns 573
No_of_seqs 479 out of 3936
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 21:02:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 7.8E-88 2.7E-92 763.2 44.8 518 40-568 68-592 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 5E-53 1.7E-57 479.5 22.9 467 44-536 8-549 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 1.6E-51 5.3E-56 466.0 24.1 460 45-536 2-529 (702)
4 2zj8_A DNA helicase, putative 100.0 4.5E-49 1.6E-53 447.0 18.3 465 45-538 2-536 (720)
5 2db3_A ATP-dependent RNA helic 100.0 5.3E-42 1.8E-46 366.4 20.2 340 40-420 52-408 (434)
6 3eiq_A Eukaryotic initiation f 100.0 1.1E-41 3.6E-46 361.1 13.8 341 41-421 37-389 (414)
7 2j0s_A ATP-dependent RNA helic 100.0 5.6E-40 1.9E-44 347.9 17.7 340 41-421 34-385 (410)
8 2i4i_A ATP-dependent RNA helic 100.0 1.8E-39 6.2E-44 344.4 19.2 342 41-421 12-385 (417)
9 1s2m_A Putative ATP-dependent 100.0 6.7E-39 2.3E-43 338.3 22.3 338 43-421 20-367 (400)
10 3fht_A ATP-dependent RNA helic 100.0 4.3E-39 1.5E-43 340.6 20.4 345 41-421 22-381 (412)
11 3pey_A ATP-dependent RNA helic 100.0 1.5E-38 5.3E-43 334.1 22.2 341 43-421 4-358 (395)
12 3fmp_B ATP-dependent RNA helic 100.0 1.1E-39 3.7E-44 353.1 13.2 346 42-421 90-448 (479)
13 1hv8_A Putative ATP-dependent 100.0 6E-38 2E-42 326.3 20.6 332 43-421 5-347 (367)
14 1xti_A Probable ATP-dependent 100.0 2.5E-37 8.6E-42 324.9 21.2 335 44-421 8-359 (391)
15 1fuu_A Yeast initiation factor 100.0 1.4E-38 4.7E-43 334.8 8.1 341 41-421 18-368 (394)
16 3o8b_A HCV NS3 protease/helica 100.0 2.3E-37 7.7E-42 339.7 15.3 304 57-421 208-516 (666)
17 3i5x_A ATP-dependent RNA helic 100.0 7.1E-36 2.4E-40 329.6 23.0 341 50-421 78-451 (563)
18 3sqw_A ATP-dependent RNA helic 100.0 2E-35 6.7E-40 327.0 24.9 341 50-421 27-400 (579)
19 2v1x_A ATP-dependent DNA helic 100.0 2.4E-35 8.3E-40 324.9 22.5 331 46-421 23-376 (591)
20 2z0m_A 337AA long hypothetical 100.0 6.7E-36 2.3E-40 307.3 14.3 311 51-417 1-321 (337)
21 2jlq_A Serine protease subunit 100.0 1.1E-35 3.7E-40 318.7 15.0 302 64-418 2-310 (451)
22 2z83_A Helicase/nucleoside tri 100.0 1.4E-35 4.7E-40 318.5 15.4 293 75-419 15-313 (459)
23 3l9o_A ATP-dependent RNA helic 100.0 7.4E-36 2.5E-40 349.0 12.7 344 44-419 162-597 (1108)
24 2ykg_A Probable ATP-dependent 100.0 1.8E-35 6.3E-40 334.5 12.9 358 58-447 5-553 (696)
25 2whx_A Serine protease/ntpase/ 100.0 1.3E-35 4.4E-40 328.2 10.3 317 46-417 151-476 (618)
26 1oyw_A RECQ helicase, ATP-depe 100.0 1.1E-34 3.8E-39 316.2 16.3 328 44-421 2-345 (523)
27 3fho_A ATP-dependent RNA helic 100.0 1.8E-35 6.2E-40 322.0 6.4 335 44-420 119-471 (508)
28 4a2p_A RIG-I, retinoic acid in 100.0 4.5E-33 1.5E-37 306.2 16.3 333 62-422 3-511 (556)
29 4f92_B U5 small nuclear ribonu 100.0 9E-32 3.1E-36 324.9 27.7 452 51-524 911-1450(1724)
30 4a4z_A Antiviral helicase SKI2 100.0 4.6E-34 1.6E-38 331.1 7.1 323 65-417 38-490 (997)
31 3oiy_A Reverse gyrase helicase 100.0 1.3E-33 4.3E-38 299.7 8.8 313 54-420 9-366 (414)
32 3rc3_A ATP-dependent RNA helic 100.0 3.3E-33 1.1E-37 310.1 11.7 310 79-449 153-476 (677)
33 3tbk_A RIG-I helicase domain; 100.0 2E-32 6.7E-37 300.7 15.2 330 65-422 3-510 (555)
34 2wv9_A Flavivirin protease NS2 100.0 1.9E-32 6.5E-37 304.8 13.7 306 60-417 204-531 (673)
35 1yks_A Genome polyprotein [con 100.0 4.6E-32 1.6E-36 289.5 15.7 289 77-417 4-297 (440)
36 4a2q_A RIG-I, retinoic acid in 100.0 1.7E-31 5.8E-36 305.9 17.0 334 61-422 243-752 (797)
37 2xgj_A ATP-dependent RNA helic 100.0 3.2E-31 1.1E-35 307.3 16.1 322 65-419 85-499 (1010)
38 4f92_B U5 small nuclear ribonu 100.0 2.1E-30 7.3E-35 313.0 23.5 455 62-533 75-629 (1724)
39 2v6i_A RNA helicase; membrane, 100.0 8.6E-31 2.9E-35 279.0 17.1 285 80-417 1-288 (431)
40 1tf5_A Preprotein translocase 100.0 1.3E-30 4.4E-35 288.6 18.2 315 61-421 79-547 (844)
41 1wp9_A ATP-dependent RNA helic 100.0 2.7E-30 9.1E-35 277.9 19.8 316 65-422 8-478 (494)
42 4a2w_A RIG-I, retinoic acid in 100.0 4.4E-30 1.5E-34 297.7 18.1 334 61-421 243-751 (936)
43 4gl2_A Interferon-induced heli 100.0 1E-30 3.6E-35 295.6 5.1 110 279-418 400-517 (699)
44 4ddu_A Reverse gyrase; topoiso 100.0 5E-30 1.7E-34 299.8 10.5 344 63-445 76-525 (1104)
45 1gku_B Reverse gyrase, TOP-RG; 100.0 7.3E-30 2.5E-34 298.4 10.3 274 60-373 52-352 (1054)
46 1gm5_A RECG; helicase, replica 100.0 5.7E-30 1.9E-34 288.3 6.6 314 53-417 356-695 (780)
47 2fsf_A Preprotein translocase 100.0 2.8E-28 9.5E-33 269.3 17.1 312 65-421 73-585 (853)
48 3eaq_A Heat resistant RNA depe 100.0 7.9E-29 2.7E-33 238.4 10.2 187 250-474 6-211 (212)
49 3i32_A Heat resistant RNA depe 99.9 1.3E-28 4.6E-33 248.2 8.0 192 250-479 3-213 (300)
50 1nkt_A Preprotein translocase 99.9 5.8E-27 2E-31 259.0 20.7 314 62-421 108-619 (922)
51 2eyq_A TRCF, transcription-rep 99.9 9.3E-27 3.2E-31 273.8 18.6 304 62-420 600-923 (1151)
52 2fwr_A DNA repair protein RAD2 99.9 3.4E-26 1.2E-30 246.8 10.4 293 65-422 92-457 (472)
53 2oca_A DAR protein, ATP-depend 99.9 1.7E-26 5.7E-31 251.6 6.0 303 64-417 111-453 (510)
54 3llm_A ATP-dependent RNA helic 99.9 1E-24 3.5E-29 213.1 14.7 189 51-243 46-235 (235)
55 3i4u_A ATP-dependent RNA helic 99.9 4E-25 1.4E-29 218.4 11.3 116 454-569 6-122 (270)
56 3h1t_A Type I site-specific re 99.9 3.7E-23 1.3E-27 229.2 13.6 307 65-409 177-545 (590)
57 2hjv_A ATP-dependent RNA helic 99.9 3.7E-22 1.3E-26 183.6 10.9 136 248-421 8-144 (163)
58 2rb4_A ATP-dependent RNA helic 99.9 4.7E-22 1.6E-26 185.1 10.9 136 248-421 6-149 (175)
59 1t5i_A C_terminal domain of A 99.9 4.1E-22 1.4E-26 184.9 9.4 135 248-420 4-139 (172)
60 1fuk_A Eukaryotic initiation f 99.9 3.8E-22 1.3E-26 183.9 8.6 135 249-421 3-139 (165)
61 2p6n_A ATP-dependent RNA helic 99.9 7E-22 2.4E-26 186.5 8.9 147 234-419 11-161 (191)
62 2jgn_A DBX, DDX3, ATP-dependen 99.8 1.3E-21 4.5E-26 183.7 8.8 137 248-421 18-155 (185)
63 3jux_A Protein translocase sub 99.8 6.1E-20 2.1E-24 199.1 18.4 165 218-421 411-589 (822)
64 3dmq_A RNA polymerase-associat 99.8 3.9E-20 1.3E-24 214.8 17.7 122 269-421 493-617 (968)
65 2yjt_D ATP-dependent RNA helic 99.7 9.7E-22 3.3E-26 182.1 0.0 134 250-421 4-139 (170)
66 2d7d_A Uvrabc system protein B 99.8 8E-19 2.7E-23 195.7 16.1 115 278-421 444-558 (661)
67 1c4o_A DNA nucleotide excision 99.8 1.1E-18 3.8E-23 194.7 16.4 115 278-421 438-552 (664)
68 1qde_A EIF4A, translation init 99.8 4.8E-19 1.6E-23 171.1 11.4 202 42-246 12-219 (224)
69 3fmo_B ATP-dependent RNA helic 99.8 4.3E-19 1.5E-23 179.5 11.5 199 42-243 90-297 (300)
70 1z63_A Helicase of the SNF2/RA 99.8 1.2E-18 4E-23 189.1 14.7 114 278-422 340-456 (500)
71 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 4.9E-18 1.7E-22 196.2 19.2 326 53-418 251-708 (1038)
72 1q0u_A Bstdead; DEAD protein, 99.8 9.6E-19 3.3E-23 168.6 10.5 192 44-238 4-206 (219)
73 3bor_A Human initiation factor 99.8 1.1E-18 3.8E-23 170.3 10.7 195 41-238 27-229 (237)
74 3ber_A Probable ATP-dependent 99.8 5.5E-19 1.9E-23 173.9 8.4 198 41-241 40-245 (249)
75 3fe2_A Probable ATP-dependent 99.8 1.3E-18 4.5E-23 170.4 10.4 202 40-243 25-237 (242)
76 1vec_A ATP-dependent RNA helic 99.8 1.3E-18 4.5E-23 165.7 9.3 194 44-240 3-203 (206)
77 2oxc_A Probable ATP-dependent 99.7 1.6E-18 5.6E-23 168.3 7.7 198 42-241 22-226 (230)
78 2pl3_A Probable ATP-dependent 99.7 2.8E-18 9.4E-23 167.3 9.1 201 42-244 23-233 (236)
79 1t6n_A Probable ATP-dependent 99.7 6.9E-18 2.4E-22 162.6 10.7 194 43-238 13-215 (220)
80 3dkp_A Probable ATP-dependent 99.7 6.9E-18 2.4E-22 165.4 10.6 202 41-244 22-241 (245)
81 3iuy_A Probable ATP-dependent 99.7 8.4E-18 2.9E-22 163.0 9.4 195 41-240 16-224 (228)
82 2gxq_A Heat resistant RNA depe 99.7 3.7E-17 1.3E-21 155.7 12.2 193 45-240 2-201 (207)
83 3ly5_A ATP-dependent RNA helic 99.7 8.6E-18 3E-22 166.6 7.4 194 44-239 52-258 (262)
84 1wrb_A DJVLGB; RNA helicase, D 99.7 7.3E-18 2.5E-22 166.1 6.7 200 42-243 21-239 (253)
85 1z3i_X Similar to RAD54-like; 99.7 3E-15 1E-19 166.9 21.5 114 278-422 415-531 (644)
86 3tui_C Methionine import ATP-b 99.6 7.3E-16 2.5E-20 157.9 11.6 151 77-234 50-233 (366)
87 3tif_A Uncharacterized ABC tra 99.6 5.3E-16 1.8E-20 150.9 9.2 145 78-228 28-208 (235)
88 3fvq_A Fe(3+) IONS import ATP- 99.6 1.6E-15 5.5E-20 155.3 11.1 150 78-234 27-208 (359)
89 3rlf_A Maltose/maltodextrin im 99.6 1.3E-15 4.4E-20 157.1 10.4 150 78-234 26-203 (381)
90 2pcj_A ABC transporter, lipopr 99.6 1.4E-15 4.8E-20 146.9 9.9 143 78-228 27-202 (224)
91 3mwy_W Chromo domain-containin 99.6 9E-16 3.1E-20 175.4 9.6 115 278-423 571-688 (800)
92 3gfo_A Cobalt import ATP-bindi 99.6 3.3E-15 1.1E-19 148.3 11.0 149 78-233 31-212 (275)
93 1sgw_A Putative ABC transporte 99.6 4.4E-15 1.5E-19 141.9 10.9 139 78-227 32-194 (214)
94 4g1u_C Hemin import ATP-bindin 99.6 2.7E-15 9.2E-20 148.5 9.6 149 78-233 34-216 (266)
95 3d31_A Sulfate/molybdate ABC t 99.6 3.3E-15 1.1E-19 152.9 10.2 149 78-233 23-196 (348)
96 1z47_A CYSA, putative ABC-tran 99.6 4.3E-15 1.5E-19 152.2 11.0 149 78-233 38-214 (355)
97 2olj_A Amino acid ABC transpor 99.6 4.5E-15 1.5E-19 146.5 10.3 148 78-233 47-227 (263)
98 1vpl_A ABC transporter, ATP-bi 99.6 6.6E-15 2.3E-19 144.8 11.3 142 78-227 38-207 (256)
99 2yyz_A Sugar ABC transporter, 99.6 5.5E-15 1.9E-19 151.8 11.1 149 78-233 26-202 (359)
100 1g6h_A High-affinity branched- 99.6 7.1E-15 2.4E-19 145.0 10.8 149 78-228 30-215 (257)
101 2it1_A 362AA long hypothetical 99.6 6.1E-15 2.1E-19 151.6 10.6 149 78-233 26-202 (362)
102 1oxx_K GLCV, glucose, ABC tran 99.6 5.5E-15 1.9E-19 151.8 10.0 149 78-233 28-209 (353)
103 1ji0_A ABC transporter; ATP bi 99.6 6.9E-15 2.4E-19 143.5 10.1 154 78-233 29-207 (240)
104 1b0u_A Histidine permease; ABC 99.6 4.8E-15 1.6E-19 146.5 9.0 148 78-233 29-221 (262)
105 1v43_A Sugar-binding transport 99.5 6.7E-15 2.3E-19 151.8 9.4 149 78-233 34-210 (372)
106 1g29_1 MALK, maltose transport 99.5 7.6E-15 2.6E-19 151.7 9.7 150 78-234 26-209 (372)
107 2onk_A Molybdate/tungstate ABC 99.5 7.2E-15 2.5E-19 143.1 7.2 148 78-233 22-195 (240)
108 2yz2_A Putative ABC transporte 99.5 2.3E-14 8E-19 141.9 10.1 149 78-228 30-200 (266)
109 2nq2_C Hypothetical ABC transp 99.5 6.6E-14 2.2E-18 137.5 12.1 153 78-233 28-197 (253)
110 2ihy_A ABC transporter, ATP-bi 99.5 2.2E-14 7.6E-19 142.8 8.4 142 78-227 44-224 (279)
111 2qi9_C Vitamin B12 import ATP- 99.5 2.7E-14 9.1E-19 139.9 8.6 148 78-233 23-201 (249)
112 2ixe_A Antigen peptide transpo 99.5 4.7E-14 1.6E-18 140.0 8.7 149 78-228 42-219 (271)
113 2ff7_A Alpha-hemolysin translo 99.5 8.3E-14 2.9E-18 136.3 10.1 147 78-228 32-206 (247)
114 2d2e_A SUFC protein; ABC-ATPas 99.5 5.1E-14 1.8E-18 138.2 7.1 143 78-227 26-204 (250)
115 3nh6_A ATP-binding cassette SU 99.4 1.1E-13 3.7E-18 139.2 8.3 147 78-228 77-251 (306)
116 1mv5_A LMRA, multidrug resista 99.4 7.6E-14 2.6E-18 136.4 6.3 147 78-228 25-200 (243)
117 2ipc_A Preprotein translocase 99.4 3.8E-12 1.3E-16 140.9 19.7 126 62-194 76-212 (997)
118 2zu0_C Probable ATP-dependent 99.4 1.6E-13 5.5E-18 135.9 7.9 144 78-228 43-226 (267)
119 2ghi_A Transport protein; mult 99.4 1.7E-13 6E-18 135.1 7.5 147 78-228 43-216 (260)
120 1z5z_A Helicase of the SNF2/RA 99.4 2.2E-13 7.4E-18 135.3 7.5 129 260-422 95-227 (271)
121 2cbz_A Multidrug resistance-as 99.4 3.2E-13 1.1E-17 131.3 6.6 148 78-228 28-191 (237)
122 2pjz_A Hypothetical protein ST 99.4 2.9E-13 1E-17 133.5 6.2 137 78-227 28-186 (263)
123 3gd7_A Fusion complex of cysti 99.4 4E-13 1.4E-17 139.4 6.5 142 77-228 43-216 (390)
124 3ozx_A RNAse L inhibitor; ATP 99.3 3.3E-12 1.1E-16 138.5 12.9 150 78-234 291-455 (538)
125 2pze_A Cystic fibrosis transme 99.3 6.1E-13 2.1E-17 128.7 5.8 145 78-228 31-192 (229)
126 3bk7_A ABC transporter ATP-bin 99.3 5.5E-12 1.9E-16 138.6 13.1 149 78-233 379-540 (607)
127 1yqt_A RNAse L inhibitor; ATP- 99.3 7.4E-12 2.5E-16 136.0 12.7 149 78-233 309-470 (538)
128 2yl4_A ATP-binding cassette SU 99.3 3.1E-12 1E-16 141.3 8.6 148 78-229 367-545 (595)
129 3b6e_A Interferon-induced heli 99.3 2.4E-12 8.2E-17 122.8 6.3 162 61-225 28-216 (216)
130 3b60_A Lipid A export ATP-bind 99.3 5.7E-12 2E-16 138.8 10.1 147 78-228 366-541 (582)
131 3qf4_A ABC transporter, ATP-bi 99.3 4.7E-12 1.6E-16 139.4 9.3 147 78-228 366-540 (587)
132 3b5x_A Lipid A export ATP-bind 99.3 2.9E-12 9.8E-17 141.1 7.1 148 78-229 366-542 (582)
133 2bbs_A Cystic fibrosis transme 99.3 2.3E-12 7.7E-17 128.9 5.5 144 78-228 61-221 (290)
134 3j16_B RLI1P; ribosome recycli 99.3 1.8E-11 6.1E-16 134.3 12.5 147 80-233 377-536 (608)
135 4a82_A Cystic fibrosis transme 99.3 7.8E-12 2.7E-16 137.5 9.6 147 78-228 364-538 (578)
136 3qf4_B Uncharacterized ABC tra 99.3 4.2E-12 1.4E-16 140.2 7.2 151 78-232 378-556 (598)
137 1yqt_A RNAse L inhibitor; ATP- 99.2 4.3E-11 1.5E-15 130.0 12.2 66 160-227 152-219 (538)
138 3bk7_A ABC transporter ATP-bin 99.2 4.4E-11 1.5E-15 131.4 12.2 144 77-228 113-290 (607)
139 2vl7_A XPD; helicase, unknown 99.2 1.4E-11 4.8E-16 134.4 7.3 127 264-413 370-516 (540)
140 2iw3_A Elongation factor 3A; a 99.1 6.3E-11 2.2E-15 135.0 10.1 138 78-227 458-606 (986)
141 4f4c_A Multidrug resistance pr 99.1 3.6E-11 1.2E-15 143.6 7.3 146 78-227 1102-1277(1321)
142 3ozx_A RNAse L inhibitor; ATP 99.1 1.1E-10 3.9E-15 126.4 9.8 66 160-228 132-199 (538)
143 3ux8_A Excinuclease ABC, A sub 99.1 4.4E-11 1.5E-15 133.9 5.6 66 161-228 197-266 (670)
144 3j16_B RLI1P; ribosome recycli 99.1 1.7E-10 5.8E-15 126.5 8.2 72 160-233 215-289 (608)
145 3g5u_A MCG1178, multidrug resi 99.0 1.9E-10 6.5E-15 137.1 8.6 146 78-227 413-586 (1284)
146 3g5u_A MCG1178, multidrug resi 99.0 2.3E-10 7.7E-15 136.5 9.0 147 78-228 1056-1232(1284)
147 3ux8_A Excinuclease ABC, A sub 99.0 8.2E-10 2.8E-14 123.6 10.4 66 161-228 538-608 (670)
148 4f4c_A Multidrug resistance pr 99.0 5E-10 1.7E-14 133.8 8.6 146 78-227 441-614 (1321)
149 1rif_A DAR protein, DNA helica 99.0 1.6E-10 5.6E-15 115.3 2.9 149 65-227 112-263 (282)
150 4gp7_A Metallophosphoesterase; 98.9 9.8E-11 3.4E-15 107.9 0.7 137 78-228 6-161 (171)
151 3b85_A Phosphate starvation-in 98.9 3.7E-10 1.3E-14 107.3 2.1 146 63-227 4-159 (208)
152 1ye8_A Protein THEP1, hypothet 98.8 1.1E-08 3.7E-13 94.7 8.9 63 161-224 71-138 (178)
153 2fz4_A DNA repair protein RAD2 98.8 2.1E-08 7.3E-13 97.2 11.0 138 64-227 91-229 (237)
154 3pih_A Uvrabc system protein A 98.8 1.2E-08 4.3E-13 116.0 10.0 66 161-228 800-870 (916)
155 2r6f_A Excinuclease ABC subuni 98.7 2.2E-08 7.4E-13 113.5 8.6 66 161-228 840-910 (972)
156 4aby_A DNA repair protein RECN 98.7 2E-08 7E-13 105.7 7.9 58 167-227 296-357 (415)
157 2iw3_A Elongation factor 3A; a 98.7 1.4E-08 4.9E-13 115.7 7.0 62 161-227 896-959 (986)
158 2ygr_A Uvrabc system protein A 98.7 2.4E-08 8.2E-13 113.5 8.5 66 161-228 858-928 (993)
159 2vf7_A UVRA2, excinuclease ABC 98.6 3.7E-08 1.3E-12 111.3 8.8 67 161-229 725-796 (842)
160 3crv_A XPD/RAD3 related DNA he 98.6 4.5E-07 1.5E-11 99.0 17.1 123 261-408 376-519 (551)
161 3qf7_A RAD50; ABC-ATPase, ATPa 98.6 8.6E-08 3E-12 99.0 7.8 66 161-228 274-347 (365)
162 2npi_A Protein CLP1; CLP1-PCF1 98.5 1.2E-08 4.1E-13 108.3 -0.2 58 164-227 233-299 (460)
163 2pt7_A CAG-ALFA; ATPase, prote 98.4 3.9E-07 1.3E-11 92.7 7.5 117 76-233 166-282 (330)
164 1nlf_A Regulatory protein REPA 98.4 9E-07 3.1E-11 87.8 9.8 138 76-227 25-182 (279)
165 2ehv_A Hypothetical protein PH 98.4 4E-07 1.4E-11 88.4 6.9 45 182-228 133-184 (251)
166 2w0m_A SSO2452; RECA, SSPF, un 98.4 8.4E-07 2.9E-11 84.9 9.0 139 77-226 19-168 (235)
167 3thx_B DNA mismatch repair pro 98.3 2.7E-07 9.3E-12 105.2 5.4 133 78-235 670-805 (918)
168 1e69_A Chromosome segregation 98.3 9.7E-07 3.3E-11 89.6 8.3 65 161-228 214-284 (322)
169 3b9q_A Chloroplast SRP recepto 98.3 5.4E-07 1.9E-11 90.4 5.9 132 78-224 97-255 (302)
170 1tq4_A IIGP1, interferon-induc 98.3 9.5E-08 3.3E-12 99.7 -0.1 69 167-235 155-247 (413)
171 3sop_A Neuronal-specific septi 98.3 3.3E-08 1.1E-12 97.7 -4.0 57 163-227 95-151 (270)
172 2og2_A Putative signal recogni 98.2 8.6E-07 2.9E-11 90.8 5.6 131 79-224 155-312 (359)
173 3thx_A DNA mismatch repair pro 98.2 1.3E-06 4.3E-11 100.0 6.4 129 79-234 660-793 (934)
174 1znw_A Guanylate kinase, GMP k 98.2 1.2E-07 4E-12 89.9 -2.4 54 180-234 137-197 (207)
175 1tf7_A KAIC; homohexamer, hexa 98.1 2.5E-06 8.7E-11 92.5 7.4 133 77-226 277-417 (525)
176 2kjq_A DNAA-related protein; s 98.1 1.7E-05 5.9E-10 70.7 10.5 23 80-102 35-57 (149)
177 3aez_A Pantothenate kinase; tr 98.1 3.5E-07 1.2E-11 92.3 -1.2 113 78-195 87-205 (312)
178 3jvv_A Twitching mobility prot 98.1 7.3E-06 2.5E-10 84.0 8.4 50 176-232 188-237 (356)
179 1cr0_A DNA primase/helicase; R 98.1 1.1E-05 3.8E-10 80.5 9.6 60 166-226 129-197 (296)
180 1rj9_A FTSY, signal recognitio 98.0 5.5E-06 1.9E-10 83.1 7.1 135 80-226 101-258 (304)
181 2o8b_B DNA mismatch repair pro 98.0 6.1E-06 2.1E-10 95.6 6.9 123 81-228 789-914 (1022)
182 4a74_A DNA repair and recombin 97.9 2E-05 6.8E-10 75.2 8.8 27 77-103 21-47 (231)
183 3ec2_A DNA replication protein 97.9 1.8E-05 6.2E-10 72.7 8.1 43 182-226 98-143 (180)
184 2eyu_A Twitching motility prot 97.9 1.7E-05 5.9E-10 77.7 7.5 53 174-233 88-140 (261)
185 2i3b_A HCR-ntpase, human cance 97.9 8.9E-06 3E-10 75.7 5.1 49 166-214 83-135 (189)
186 1pzn_A RAD51, DNA repair and r 97.9 3.8E-05 1.3E-09 78.6 9.7 138 78-227 128-287 (349)
187 1wb9_A DNA mismatch repair pro 97.8 1.9E-05 6.4E-10 89.2 7.5 54 181-235 683-739 (800)
188 1tf7_A KAIC; homohexamer, hexa 97.8 1.5E-05 5.1E-10 86.4 5.9 140 77-228 35-187 (525)
189 1ewq_A DNA mismatch repair pro 97.8 3.5E-05 1.2E-09 86.5 8.9 61 167-229 636-701 (765)
190 2cvh_A DNA repair and recombin 97.8 9.4E-05 3.2E-09 69.9 10.4 27 77-103 16-42 (220)
191 1w36_D RECD, exodeoxyribonucle 97.7 4.2E-05 1.4E-09 84.3 8.1 34 68-101 151-184 (608)
192 1f2t_B RAD50 ABC-ATPase; DNA d 97.7 2.2E-05 7.5E-10 69.9 4.6 65 161-227 52-124 (148)
193 1vma_A Cell division protein F 97.7 8.6E-05 2.9E-09 74.4 9.1 123 79-226 102-234 (306)
194 2jeo_A Uridine-cytidine kinase 97.7 2.5E-05 8.5E-10 75.8 4.5 136 77-225 21-164 (245)
195 1z6g_A Guanylate kinase; struc 97.6 1.1E-06 3.7E-11 84.0 -6.0 46 166-211 122-174 (218)
196 3lda_A DNA repair protein RAD5 97.5 0.00022 7.4E-09 74.1 9.2 28 79-106 176-203 (400)
197 1n0w_A DNA repair protein RAD5 97.5 0.00021 7.2E-09 68.5 8.4 28 77-104 20-47 (243)
198 2px0_A Flagellar biosynthesis 97.4 0.00035 1.2E-08 69.6 9.4 130 80-236 104-237 (296)
199 3kl4_A SRP54, signal recogniti 97.4 0.00079 2.7E-08 70.4 11.1 124 81-226 97-223 (433)
200 2ewv_A Twitching motility prot 97.3 0.00094 3.2E-08 68.8 10.6 119 78-233 133-251 (372)
201 2dpy_A FLII, flagellum-specifi 97.3 0.00012 4E-09 77.2 3.7 136 77-227 153-318 (438)
202 2dr3_A UPF0273 protein PH0284; 97.2 0.00065 2.2E-08 65.2 8.0 27 78-104 20-46 (247)
203 2b8t_A Thymidine kinase; deoxy 97.1 0.0014 4.7E-08 62.3 9.1 116 79-226 10-126 (223)
204 3pih_A Uvrabc system protein A 97.1 0.00035 1.2E-08 79.6 5.8 66 161-228 459-528 (916)
205 3e1s_A Exodeoxyribonuclease V, 97.1 0.0005 1.7E-08 75.0 6.5 37 66-102 189-225 (574)
206 3kta_B Chromosome segregation 97.1 0.00092 3.1E-08 60.9 7.1 64 161-227 59-128 (173)
207 2r6f_A Excinuclease ABC subuni 97.1 0.00061 2.1E-08 77.4 7.1 67 160-228 498-568 (972)
208 1ls1_A Signal recognition part 97.1 0.0018 6.1E-08 64.4 9.8 125 80-226 97-222 (295)
209 3qkt_A DNA double-strand break 97.1 0.00039 1.3E-08 70.7 5.1 65 161-227 243-315 (339)
210 3e70_C DPA, signal recognition 97.1 0.0017 5.9E-08 65.5 9.6 23 79-101 127-149 (328)
211 3dm5_A SRP54, signal recogniti 97.0 0.0026 9E-08 66.5 11.0 124 81-226 100-224 (443)
212 3szr_A Interferon-induced GTP- 97.0 0.00022 7.6E-09 78.4 3.0 46 182-227 144-197 (608)
213 2ygr_A Uvrabc system protein A 97.0 0.00071 2.4E-08 77.2 6.9 67 160-228 515-585 (993)
214 2vf7_A UVRA2, excinuclease ABC 97.0 0.00078 2.7E-08 76.1 7.0 67 160-228 373-443 (842)
215 1lw7_A Transcriptional regulat 96.9 0.00018 6.2E-09 74.0 1.1 25 77-101 164-190 (365)
216 2orw_A Thymidine kinase; TMTK, 96.9 0.0021 7.2E-08 59.2 8.1 40 183-227 75-114 (184)
217 1sxj_E Activator 1 40 kDa subu 96.9 0.0019 6.6E-08 65.7 8.4 44 182-227 132-175 (354)
218 1fnn_A CDC6P, cell division co 96.7 0.006 2E-07 62.6 10.1 23 460-482 328-350 (389)
219 1udx_A The GTP-binding protein 96.6 0.0012 4.1E-08 68.8 4.6 61 162-226 248-308 (416)
220 4ad8_A DNA repair protein RECN 96.6 0.0013 4.4E-08 71.0 4.8 64 163-229 393-461 (517)
221 1htw_A HI0065; nucleotide-bind 96.6 0.00065 2.2E-08 61.0 2.1 24 78-101 30-53 (158)
222 3h4m_A Proteasome-activating n 96.6 0.0067 2.3E-07 59.6 9.4 57 44-102 14-72 (285)
223 2r6a_A DNAB helicase, replicat 96.6 0.0038 1.3E-07 66.1 8.0 34 71-104 193-226 (454)
224 3upu_A ATP-dependent DNA helic 96.6 0.0033 1.1E-07 66.6 7.6 40 63-102 22-66 (459)
225 2yhs_A FTSY, cell division pro 96.6 0.0064 2.2E-07 64.3 9.5 24 79-102 291-314 (503)
226 1njg_A DNA polymerase III subu 96.6 0.0066 2.3E-07 57.3 8.9 31 72-102 33-66 (250)
227 3tr0_A Guanylate kinase, GMP k 96.5 0.0011 3.7E-08 61.7 2.8 24 78-101 4-27 (205)
228 2qnr_A Septin-2, protein NEDD5 96.4 0.00024 8.2E-09 71.0 -2.3 20 83-102 20-39 (301)
229 2zr9_A Protein RECA, recombina 96.4 0.011 3.8E-07 60.1 9.7 28 77-104 57-84 (349)
230 3te6_A Regulatory protein SIR3 96.3 0.021 7.3E-07 57.1 11.3 44 183-227 131-174 (318)
231 1s96_A Guanylate kinase, GMP k 96.3 0.0016 5.4E-08 61.8 2.9 26 77-102 12-37 (219)
232 3bos_A Putative DNA replicatio 96.3 0.016 5.6E-07 54.7 10.0 23 80-102 51-73 (242)
233 4a1f_A DNAB helicase, replicat 96.3 0.0097 3.3E-07 60.1 8.7 126 71-222 36-162 (338)
234 1xx6_A Thymidine kinase; NESG, 96.3 0.013 4.6E-07 54.0 8.9 25 79-103 6-30 (191)
235 1lvg_A Guanylate kinase, GMP k 96.2 0.0015 5E-08 60.9 2.1 24 79-102 2-25 (198)
236 1kgd_A CASK, peripheral plasma 96.1 0.0023 8E-08 58.5 2.9 23 80-102 4-26 (180)
237 1zp6_A Hypothetical protein AT 96.1 0.0018 6.1E-08 59.6 2.0 26 77-102 5-30 (191)
238 3cf0_A Transitional endoplasmi 96.1 0.011 3.7E-07 58.9 7.6 58 44-102 12-70 (301)
239 3lnc_A Guanylate kinase, GMP k 96.1 0.0019 6.4E-08 61.6 2.0 25 78-102 24-48 (231)
240 3hr8_A Protein RECA; alpha and 96.1 0.024 8.2E-07 57.6 10.2 28 77-104 57-84 (356)
241 3a00_A Guanylate kinase, GMP k 96.0 0.0023 7.7E-08 58.9 2.3 22 81-102 1-22 (186)
242 3b9p_A CG5977-PA, isoform A; A 96.0 0.017 5.8E-07 57.0 8.8 23 80-102 53-75 (297)
243 3n70_A Transport activator; si 96.0 0.039 1.3E-06 48.2 10.2 28 76-103 19-46 (145)
244 2chg_A Replication factor C sm 96.0 0.05 1.7E-06 50.3 11.6 30 73-102 28-59 (226)
245 2j9r_A Thymidine kinase; TK1, 96.0 0.014 4.9E-07 54.6 7.4 38 184-226 101-138 (214)
246 1jr3_A DNA polymerase III subu 95.9 0.022 7.6E-07 58.0 9.6 19 83-101 40-58 (373)
247 3c8u_A Fructokinase; YP_612366 95.9 0.0026 8.7E-08 59.7 2.1 23 79-101 20-42 (208)
248 2qen_A Walker-type ATPase; unk 95.9 0.048 1.6E-06 54.7 11.8 31 72-102 22-52 (350)
249 2zts_A Putative uncharacterize 95.9 0.02 6.9E-07 54.6 8.5 28 78-105 27-54 (251)
250 2rcn_A Probable GTPase ENGC; Y 95.9 0.0088 3E-07 60.9 6.1 26 77-102 211-236 (358)
251 1zu4_A FTSY; GTPase, signal re 95.9 0.031 1E-06 56.1 10.0 23 79-101 103-125 (320)
252 2v9p_A Replication protein E1; 95.8 0.0033 1.1E-07 62.6 2.6 26 76-101 121-146 (305)
253 2j41_A Guanylate kinase; GMP, 95.8 0.0038 1.3E-07 58.0 2.8 25 78-102 3-27 (207)
254 2v1u_A Cell division control p 95.8 0.017 5.9E-07 58.9 8.1 24 79-102 42-65 (387)
255 2gza_A Type IV secretion syste 95.7 0.0038 1.3E-07 63.9 2.7 27 76-102 170-196 (361)
256 2qby_A CDC6 homolog 1, cell di 95.7 0.016 5.5E-07 59.1 7.2 23 80-102 44-66 (386)
257 3k1j_A LON protease, ATP-depen 95.7 0.014 4.6E-07 64.2 7.0 33 70-102 49-81 (604)
258 3asz_A Uridine kinase; cytidin 95.7 0.004 1.4E-07 58.2 2.4 23 79-101 4-26 (211)
259 3tau_A Guanylate kinase, GMP k 95.6 0.0053 1.8E-07 57.5 2.8 24 79-102 6-29 (208)
260 2qz4_A Paraplegin; AAA+, SPG7, 95.5 0.027 9.1E-07 54.3 7.7 24 79-102 37-60 (262)
261 3e2i_A Thymidine kinase; Zn-bi 95.5 0.041 1.4E-06 51.5 8.4 38 183-225 100-137 (219)
262 2ce7_A Cell division protein F 95.5 0.023 7.9E-07 60.2 7.6 21 82-102 50-70 (476)
263 2qby_B CDC6 homolog 3, cell di 95.4 0.035 1.2E-06 56.7 8.7 23 460-482 316-338 (384)
264 4eun_A Thermoresistant glucoki 95.4 0.0064 2.2E-07 56.5 2.8 23 79-101 27-49 (200)
265 1p9r_A General secretion pathw 95.4 0.011 3.8E-07 61.6 4.8 24 79-102 165-188 (418)
266 2orv_A Thymidine kinase; TP4A 95.4 0.043 1.5E-06 52.0 8.3 26 79-104 17-42 (234)
267 3bh0_A DNAB-like replicative h 95.4 0.018 6E-07 57.7 6.1 127 71-222 58-187 (315)
268 1w1w_A Structural maintenance 95.4 0.015 5.3E-07 60.9 5.7 62 163-226 330-397 (430)
269 2z4s_A Chromosomal replication 95.3 0.016 5.6E-07 60.9 5.6 40 184-225 194-236 (440)
270 2z43_A DNA repair and recombin 95.3 0.044 1.5E-06 55.0 8.7 28 78-105 104-131 (324)
271 1v5w_A DMC1, meiotic recombina 95.3 0.066 2.3E-06 54.2 10.0 28 78-105 119-146 (343)
272 3ney_A 55 kDa erythrocyte memb 95.3 0.0083 2.8E-07 55.7 2.9 23 80-102 18-40 (197)
273 2bdt_A BH3686; alpha-beta prot 95.2 0.0059 2E-07 56.0 1.8 22 81-102 2-23 (189)
274 1j8m_F SRP54, signal recogniti 95.2 0.079 2.7E-06 52.5 10.2 124 81-225 98-223 (297)
275 1a5t_A Delta prime, HOLB; zinc 95.2 0.098 3.4E-06 52.6 11.1 28 74-101 14-44 (334)
276 2ffh_A Protein (FFH); SRP54, s 95.2 0.083 2.8E-06 55.0 10.7 22 80-101 97-118 (425)
277 3auy_A DNA double-strand break 95.2 0.016 5.4E-07 59.5 5.0 63 162-227 276-347 (371)
278 2oap_1 GSPE-2, type II secreti 95.1 0.012 4E-07 63.1 4.0 43 59-102 239-281 (511)
279 1l8q_A Chromosomal replication 95.0 0.02 6.8E-07 57.4 5.3 22 81-102 37-58 (324)
280 1iqp_A RFCS; clamp loader, ext 95.0 0.063 2.2E-06 53.3 8.9 27 76-102 39-67 (327)
281 2qag_C Septin-7; cell cycle, c 95.0 0.0096 3.3E-07 62.0 2.6 19 84-102 34-52 (418)
282 2zpa_A Uncharacterized protein 94.8 0.1 3.6E-06 57.1 10.5 113 66-227 175-289 (671)
283 3u61_B DNA polymerase accessor 94.8 0.1 3.6E-06 52.0 9.8 20 82-101 49-68 (324)
284 1w4r_A Thymidine kinase; type 94.8 0.042 1.4E-06 50.6 6.2 39 183-227 90-128 (195)
285 4a15_A XPD helicase, ATP-depen 94.8 0.013 4.5E-07 64.4 3.3 69 67-138 4-76 (620)
286 1d2n_A N-ethylmaleimide-sensit 94.7 0.036 1.2E-06 54.0 6.0 22 81-102 64-85 (272)
287 3uie_A Adenylyl-sulfate kinase 94.7 0.011 3.9E-07 54.7 2.2 25 77-101 21-45 (200)
288 1knq_A Gluconate kinase; ALFA/ 94.7 0.012 4.1E-07 53.1 2.3 22 80-101 7-28 (175)
289 4b4t_H 26S protease regulatory 94.7 0.086 2.9E-06 55.1 9.0 59 41-101 203-263 (467)
290 2obl_A ESCN; ATPase, hydrolase 94.7 0.012 3.9E-07 59.9 2.3 26 77-102 67-92 (347)
291 3vfd_A Spastin; ATPase, microt 94.7 0.12 4.1E-06 53.1 10.2 23 80-102 147-169 (389)
292 2bbw_A Adenylate kinase 4, AK4 94.6 0.014 4.9E-07 56.0 2.8 23 80-102 26-48 (246)
293 1sxj_A Activator 1 95 kDa subu 94.6 0.12 4.1E-06 55.4 10.2 22 81-102 77-98 (516)
294 2qag_B Septin-6, protein NEDD5 94.6 0.012 4.1E-07 61.2 2.2 26 77-102 36-63 (427)
295 2vp4_A Deoxynucleoside kinase; 94.5 0.012 4.1E-07 56.0 2.0 23 79-101 18-40 (230)
296 3uk6_A RUVB-like 2; hexameric 94.5 0.15 5.3E-06 51.6 10.5 22 81-102 70-91 (368)
297 1kag_A SKI, shikimate kinase I 94.5 0.013 4.5E-07 52.6 2.2 22 80-101 3-24 (173)
298 2v3c_C SRP54, signal recogniti 94.5 0.027 9.2E-07 58.9 4.7 21 82-102 100-120 (432)
299 4a15_A XPD helicase, ATP-depen 94.5 0.055 1.9E-06 59.4 7.3 135 216-372 375-525 (620)
300 3kta_A Chromosome segregation 94.4 0.015 5.2E-07 52.8 2.4 20 83-102 28-47 (182)
301 2o5v_A DNA replication and rep 94.4 0.027 9.3E-07 57.4 4.5 58 162-224 260-329 (359)
302 1sq5_A Pantothenate kinase; P- 94.4 0.015 5.1E-07 58.1 2.3 23 79-101 78-100 (308)
303 2fna_A Conserved hypothetical 94.4 0.19 6.6E-06 50.2 10.7 21 82-102 31-51 (357)
304 4b4t_J 26S protease regulatory 94.3 0.14 4.7E-06 52.8 9.4 59 42-102 143-203 (405)
305 3pfi_A Holliday junction ATP-d 94.3 0.26 9E-06 49.3 11.6 20 82-101 56-75 (338)
306 3syl_A Protein CBBX; photosynt 94.3 0.24 8.3E-06 48.7 11.2 20 81-100 67-86 (309)
307 1g5t_A COB(I)alamin adenosyltr 94.3 0.19 6.4E-06 46.3 9.3 45 183-230 119-167 (196)
308 4b4t_I 26S protease regulatory 94.2 0.1 3.6E-06 54.0 8.3 61 40-102 175-237 (437)
309 1u94_A RECA protein, recombina 94.2 0.13 4.5E-06 52.3 9.0 27 78-104 60-86 (356)
310 1xwi_A SKD1 protein; VPS4B, AA 94.2 0.15 5.1E-06 51.0 9.4 58 44-103 9-67 (322)
311 3vaa_A Shikimate kinase, SK; s 94.2 0.021 7E-07 52.9 2.8 24 78-101 22-45 (199)
312 2o0j_A Terminase, DNA packagin 94.2 0.41 1.4E-05 49.0 12.7 68 65-137 162-229 (385)
313 2yv5_A YJEQ protein; hydrolase 94.1 0.03 1E-06 55.6 3.9 26 77-102 161-186 (302)
314 2qp9_X Vacuolar protein sortin 94.1 0.027 9.1E-07 57.4 3.5 22 81-102 84-105 (355)
315 4e22_A Cytidylate kinase; P-lo 94.1 0.022 7.6E-07 55.0 2.8 24 79-102 25-48 (252)
316 1ojl_A Transcriptional regulat 94.0 0.17 5.9E-06 50.1 9.3 26 78-103 22-47 (304)
317 3tqc_A Pantothenate kinase; bi 94.0 0.034 1.2E-06 55.7 4.0 19 83-101 94-112 (321)
318 2qor_A Guanylate kinase; phosp 93.9 0.019 6.6E-07 53.3 2.0 26 77-102 8-33 (204)
319 1pui_A ENGB, probable GTP-bind 93.9 0.016 5.6E-07 53.7 1.4 25 78-102 23-47 (210)
320 2f1r_A Molybdopterin-guanine d 93.9 0.018 6.2E-07 52.1 1.6 20 82-101 3-22 (171)
321 2q6t_A DNAB replication FORK h 93.9 0.17 5.8E-06 53.1 9.4 125 72-222 191-316 (444)
322 2j37_W Signal recognition part 93.9 0.25 8.7E-06 52.5 10.7 123 82-226 102-225 (504)
323 1xp8_A RECA protein, recombina 93.7 0.3 1E-05 49.7 10.6 28 77-104 70-97 (366)
324 1w5s_A Origin recognition comp 93.7 0.11 3.6E-06 53.6 7.3 23 80-102 49-73 (412)
325 1rz3_A Hypothetical protein rb 93.7 0.025 8.4E-07 52.5 2.2 23 79-101 20-42 (201)
326 2qt1_A Nicotinamide riboside k 93.7 0.022 7.7E-07 52.9 1.9 26 76-101 16-41 (207)
327 1hqc_A RUVB; extended AAA-ATPa 93.7 0.23 7.7E-06 49.3 9.5 22 81-102 38-59 (324)
328 2qm8_A GTPase/ATPase; G protei 93.6 0.024 8.1E-07 57.4 2.0 25 78-102 52-76 (337)
329 2x8a_A Nuclear valosin-contain 93.5 0.022 7.4E-07 55.8 1.6 57 44-102 7-65 (274)
330 3euj_A Chromosome partition pr 93.5 0.027 9.2E-07 59.6 2.3 22 78-100 27-48 (483)
331 1u0l_A Probable GTPase ENGC; p 93.4 0.04 1.4E-06 54.7 3.3 26 77-102 165-190 (301)
332 1t9h_A YLOQ, probable GTPase E 93.4 0.019 6.6E-07 57.1 0.9 25 77-101 169-193 (307)
333 3cpe_A Terminase, DNA packagin 93.3 0.3 1E-05 53.2 10.4 68 66-138 163-230 (592)
334 1f2t_A RAD50 ABC-ATPase; DNA d 93.1 0.041 1.4E-06 48.5 2.6 20 82-101 24-43 (149)
335 2pez_A Bifunctional 3'-phospho 93.1 0.036 1.2E-06 50.1 2.3 22 80-101 4-25 (179)
336 1cke_A CK, MSSA, protein (cyti 93.1 0.041 1.4E-06 51.8 2.7 21 81-101 5-25 (227)
337 1nij_A Hypothetical protein YJ 93.0 0.031 1.1E-06 56.0 1.8 21 82-102 5-25 (318)
338 2xxa_A Signal recognition part 92.8 0.5 1.7E-05 49.3 10.7 21 81-101 100-120 (433)
339 3cr8_A Sulfate adenylyltranfer 92.8 0.044 1.5E-06 59.1 2.7 25 77-101 365-389 (552)
340 2gno_A DNA polymerase III, gam 92.7 0.3 1E-05 48.4 8.5 28 74-101 9-38 (305)
341 1oix_A RAS-related protein RAB 92.5 0.052 1.8E-06 49.6 2.5 22 83-104 31-52 (191)
342 1in4_A RUVB, holliday junction 92.5 0.059 2E-06 54.3 3.1 21 82-102 52-72 (334)
343 1jjv_A Dephospho-COA kinase; P 92.5 0.052 1.8E-06 50.3 2.5 20 83-102 4-23 (206)
344 1m7g_A Adenylylsulfate kinase; 92.4 0.067 2.3E-06 49.9 3.2 33 68-101 13-45 (211)
345 3co5_A Putative two-component 92.4 0.071 2.4E-06 46.4 3.1 26 76-101 22-47 (143)
346 3cm0_A Adenylate kinase; ATP-b 92.4 0.044 1.5E-06 49.7 1.8 22 80-101 3-24 (186)
347 1svm_A Large T antigen; AAA+ f 92.3 0.056 1.9E-06 55.4 2.7 25 78-102 166-190 (377)
348 1jbk_A CLPB protein; beta barr 92.3 0.11 3.8E-06 46.6 4.5 22 81-102 43-64 (195)
349 2f9l_A RAB11B, member RAS onco 92.2 0.057 2E-06 49.6 2.3 22 83-104 7-28 (199)
350 1ex7_A Guanylate kinase; subst 92.2 0.057 2E-06 49.5 2.2 22 82-103 2-23 (186)
351 2if2_A Dephospho-COA kinase; a 92.1 0.06 2E-06 49.7 2.4 20 83-102 3-22 (204)
352 1qhx_A CPT, protein (chloramph 92.1 0.068 2.3E-06 48.0 2.7 21 81-101 3-23 (178)
353 3lw7_A Adenylate kinase relate 92.1 0.062 2.1E-06 47.8 2.4 20 82-101 2-21 (179)
354 3kb2_A SPBC2 prophage-derived 92.1 0.066 2.3E-06 47.7 2.6 19 83-101 3-21 (173)
355 1kht_A Adenylate kinase; phosp 92.1 0.068 2.3E-06 48.5 2.7 21 81-101 3-23 (192)
356 3hu3_A Transitional endoplasmi 92.0 0.26 8.9E-06 52.3 7.5 24 79-102 236-259 (489)
357 4b3f_X DNA-binding protein smu 92.0 0.1 3.5E-06 57.7 4.5 37 67-103 190-227 (646)
358 3nwj_A ATSK2; P loop, shikimat 92.0 0.055 1.9E-06 52.2 2.0 21 81-101 48-68 (250)
359 2w58_A DNAI, primosome compone 91.9 0.12 4.3E-06 47.4 4.4 21 82-102 55-75 (202)
360 3t61_A Gluconokinase; PSI-biol 91.9 0.06 2.1E-06 49.7 2.1 21 81-101 18-38 (202)
361 2yvu_A Probable adenylyl-sulfa 91.7 0.068 2.3E-06 48.6 2.2 22 80-101 12-33 (186)
362 3bgw_A DNAB-like replicative h 91.7 0.26 8.8E-06 51.7 6.9 35 71-105 187-221 (444)
363 1odf_A YGR205W, hypothetical 3 91.7 0.069 2.4E-06 52.7 2.4 22 80-101 30-51 (290)
364 3vkw_A Replicase large subunit 91.6 0.44 1.5E-05 49.6 8.5 23 80-102 160-182 (446)
365 1np6_A Molybdopterin-guanine d 91.5 0.086 2.9E-06 47.8 2.7 22 81-102 6-27 (174)
366 1w1w_A Structural maintenance 91.5 0.077 2.6E-06 55.5 2.7 24 79-102 24-47 (430)
367 2bwj_A Adenylate kinase 5; pho 91.4 0.09 3.1E-06 48.1 2.8 25 77-101 8-32 (199)
368 2rhm_A Putative kinase; P-loop 91.3 0.07 2.4E-06 48.6 1.9 22 80-101 4-25 (193)
369 1ly1_A Polynucleotide kinase; 91.3 0.086 2.9E-06 47.3 2.4 21 82-102 3-23 (181)
370 2p65_A Hypothetical protein PF 91.2 0.14 4.9E-06 45.8 3.9 22 81-102 43-64 (187)
371 4eaq_A DTMP kinase, thymidylat 91.2 0.072 2.5E-06 50.5 1.9 23 79-101 24-46 (229)
372 2o5v_A DNA replication and rep 91.2 0.071 2.4E-06 54.3 1.9 22 80-102 26-47 (359)
373 3trf_A Shikimate kinase, SK; a 91.2 0.099 3.4E-06 47.3 2.7 21 81-101 5-25 (185)
374 1sxj_C Activator 1 40 kDa subu 91.1 0.14 4.6E-06 51.6 4.0 28 74-101 37-66 (340)
375 3iij_A Coilin-interacting nucl 91.1 0.08 2.7E-06 47.8 2.0 23 79-101 9-31 (180)
376 2ze6_A Isopentenyl transferase 91.1 0.087 3E-06 50.8 2.4 19 83-101 3-21 (253)
377 3qks_A DNA double-strand break 91.1 0.095 3.2E-06 48.7 2.6 20 82-101 24-43 (203)
378 2c95_A Adenylate kinase 1; tra 91.1 0.12 4E-06 47.1 3.2 24 78-101 6-29 (196)
379 2v54_A DTMP kinase, thymidylat 91.0 0.093 3.2E-06 48.2 2.4 22 80-101 3-24 (204)
380 2gj8_A MNME, tRNA modification 91.0 0.093 3.2E-06 47.0 2.3 24 80-103 3-26 (172)
381 1y63_A LMAJ004144AAA protein; 90.9 0.11 3.7E-06 47.2 2.7 22 80-101 9-30 (184)
382 2gk6_A Regulator of nonsense t 90.8 0.18 6.3E-06 55.3 4.9 36 67-102 181-216 (624)
383 1q57_A DNA primase/helicase; d 90.6 0.67 2.3E-05 49.3 9.1 38 69-106 230-267 (503)
384 3pxi_A Negative regulator of g 90.6 0.85 2.9E-05 51.2 10.3 19 83-101 523-541 (758)
385 1ixz_A ATP-dependent metallopr 90.5 0.1 3.5E-06 50.0 2.3 20 83-102 51-70 (254)
386 1gvn_B Zeta; postsegregational 90.4 0.1 3.4E-06 51.4 2.2 22 81-102 33-54 (287)
387 2wji_A Ferrous iron transport 90.4 0.12 4.2E-06 45.7 2.6 20 83-102 5-24 (165)
388 1zd8_A GTP:AMP phosphotransfer 90.4 0.12 4.3E-06 48.6 2.7 24 79-102 5-28 (227)
389 3umf_A Adenylate kinase; rossm 90.3 0.11 3.8E-06 48.9 2.2 25 77-101 25-49 (217)
390 1xjc_A MOBB protein homolog; s 90.3 0.13 4.6E-06 46.2 2.7 21 82-102 5-25 (169)
391 1gtv_A TMK, thymidylate kinase 90.3 0.079 2.7E-06 49.2 1.2 19 83-101 2-20 (214)
392 3qkt_A DNA double-strand break 90.2 0.11 3.8E-06 52.4 2.4 21 81-101 23-43 (339)
393 2jaq_A Deoxyguanosine kinase; 90.2 0.12 4.2E-06 47.3 2.4 19 83-101 2-20 (205)
394 1lv7_A FTSH; alpha/beta domain 90.2 0.26 8.8E-06 47.2 4.9 22 81-102 45-66 (257)
395 3a8t_A Adenylate isopentenyltr 90.2 0.098 3.4E-06 52.5 1.8 22 80-101 39-60 (339)
396 3cf2_A TER ATPase, transitiona 90.2 0.22 7.5E-06 56.0 4.8 22 81-102 238-259 (806)
397 1tev_A UMP-CMP kinase; ploop, 89.9 0.12 4.2E-06 46.9 2.2 21 81-101 3-23 (196)
398 2plr_A DTMP kinase, probable t 89.9 0.12 4.2E-06 47.6 2.3 22 80-101 3-24 (213)
399 2wwf_A Thymidilate kinase, put 89.9 0.14 4.8E-06 47.3 2.7 23 79-101 8-30 (212)
400 3cf2_A TER ATPase, transitiona 89.9 0.41 1.4E-05 53.8 6.8 61 43-103 473-533 (806)
401 2qmh_A HPR kinase/phosphorylas 89.8 0.13 4.4E-06 47.5 2.2 24 80-103 33-56 (205)
402 2www_A Methylmalonic aciduria 89.7 0.12 4.3E-06 52.3 2.3 22 81-102 74-95 (349)
403 1nks_A Adenylate kinase; therm 89.7 0.14 4.8E-06 46.4 2.4 19 83-101 3-21 (194)
404 1iy2_A ATP-dependent metallopr 89.6 0.13 4.6E-06 50.0 2.3 57 43-102 36-94 (278)
405 1ni3_A YCHF GTPase, YCHF GTP-b 89.6 0.14 4.9E-06 52.6 2.6 28 76-103 15-42 (392)
406 1nn5_A Similar to deoxythymidy 89.5 0.16 5.4E-06 47.0 2.7 23 79-101 7-29 (215)
407 1vht_A Dephospho-COA kinase; s 89.5 0.14 4.6E-06 47.9 2.2 21 81-101 4-24 (218)
408 3exa_A TRNA delta(2)-isopenten 89.5 0.14 4.9E-06 50.7 2.4 22 81-102 3-24 (322)
409 2zej_A Dardarin, leucine-rich 89.4 0.14 4.8E-06 46.2 2.2 20 83-102 4-23 (184)
410 2vli_A Antibiotic resistance p 89.3 0.14 4.7E-06 46.1 2.0 22 80-101 4-25 (183)
411 2z0h_A DTMP kinase, thymidylat 89.3 0.16 5.4E-06 46.3 2.4 19 83-101 2-20 (197)
412 1aky_A Adenylate kinase; ATP:A 89.2 0.18 6.2E-06 47.1 2.8 22 80-101 3-24 (220)
413 1qhl_A Protein (cell division 89.1 0.036 1.2E-06 52.6 -2.2 19 83-101 29-47 (227)
414 2wjg_A FEOB, ferrous iron tran 89.1 0.17 5.9E-06 45.5 2.6 21 83-103 9-29 (188)
415 2p5t_B PEZT; postsegregational 89.1 0.12 4E-06 49.8 1.5 23 79-101 30-52 (253)
416 2wjy_A Regulator of nonsense t 89.0 0.29 9.8E-06 55.3 4.7 36 67-102 357-392 (800)
417 1q3t_A Cytidylate kinase; nucl 88.9 0.19 6.3E-06 47.7 2.7 23 79-101 14-36 (236)
418 1zuh_A Shikimate kinase; alpha 88.8 0.19 6.6E-06 44.6 2.6 21 81-101 7-27 (168)
419 1zak_A Adenylate kinase; ATP:A 88.8 0.16 5.4E-06 47.6 2.0 22 80-101 4-25 (222)
420 3fb4_A Adenylate kinase; psych 88.6 0.19 6.4E-06 46.7 2.4 19 83-101 2-20 (216)
421 3tlx_A Adenylate kinase 2; str 88.6 0.25 8.4E-06 47.2 3.3 24 79-102 27-50 (243)
422 2e87_A Hypothetical protein PH 88.5 3.1 0.0001 41.9 11.7 23 80-102 166-188 (357)
423 3cmu_A Protein RECA, recombina 88.5 0.84 2.9E-05 56.1 8.5 31 77-107 1077-1107(2050)
424 4b4t_M 26S protease regulatory 88.5 0.21 7.1E-06 52.0 2.9 61 40-102 174-236 (434)
425 2cdn_A Adenylate kinase; phosp 88.3 0.23 7.8E-06 45.6 2.8 21 81-101 20-40 (201)
426 3cmw_A Protein RECA, recombina 88.3 0.85 2.9E-05 55.3 8.2 27 78-104 729-755 (1706)
427 1via_A Shikimate kinase; struc 88.3 0.19 6.6E-06 45.0 2.2 19 83-101 6-24 (175)
428 3foz_A TRNA delta(2)-isopenten 88.2 0.19 6.4E-06 49.8 2.2 21 81-101 10-30 (316)
429 3auy_A DNA double-strand break 88.2 0.16 5.6E-06 51.8 1.9 20 82-101 26-45 (371)
430 1qf9_A UMP/CMP kinase, protein 88.2 0.21 7.1E-06 45.2 2.4 20 82-101 7-26 (194)
431 2pbr_A DTMP kinase, thymidylat 88.1 0.21 7.3E-06 45.2 2.5 19 83-101 2-20 (195)
432 3sr0_A Adenylate kinase; phosp 88.1 0.21 7.3E-06 46.4 2.4 19 83-101 2-20 (206)
433 1ukz_A Uridylate kinase; trans 88.0 0.21 7.1E-06 45.9 2.3 21 81-101 15-35 (203)
434 3dl0_A Adenylate kinase; phosp 88.0 0.22 7.4E-06 46.3 2.4 19 83-101 2-20 (216)
435 1uf9_A TT1252 protein; P-loop, 87.9 0.22 7.5E-06 45.6 2.4 22 81-102 8-29 (203)
436 2dyk_A GTP-binding protein; GT 87.7 0.23 7.8E-06 43.2 2.3 22 83-104 3-24 (161)
437 3a4m_A L-seryl-tRNA(SEC) kinas 87.7 0.21 7.3E-06 48.1 2.3 22 80-101 3-24 (260)
438 2p67_A LAO/AO transport system 87.7 0.21 7.2E-06 50.4 2.3 25 78-102 53-77 (341)
439 2ce2_X GTPase HRAS; signaling 87.6 0.23 7.9E-06 43.1 2.3 22 83-104 5-26 (166)
440 1e6c_A Shikimate kinase; phosp 87.6 0.21 7.2E-06 44.4 2.0 20 82-101 3-22 (173)
441 1z2a_A RAS-related protein RAB 87.5 0.24 8.1E-06 43.4 2.3 22 83-104 7-28 (168)
442 3hws_A ATP-dependent CLP prote 87.5 0.67 2.3E-05 46.9 6.0 23 80-102 50-72 (363)
443 1sxj_D Activator 1 41 kDa subu 87.5 0.3 1E-05 49.0 3.3 29 73-101 48-78 (353)
444 1ofh_A ATP-dependent HSL prote 87.5 0.74 2.5E-05 45.0 6.1 22 81-102 50-71 (310)
445 3d3q_A TRNA delta(2)-isopenten 87.5 0.23 8E-06 49.8 2.4 20 82-101 8-27 (340)
446 3cmw_A Protein RECA, recombina 87.5 1 3.5E-05 54.6 8.3 29 78-106 380-408 (1706)
447 2pt5_A Shikimate kinase, SK; a 87.4 0.25 8.6E-06 43.7 2.4 19 83-101 2-20 (168)
448 4fcw_A Chaperone protein CLPB; 87.3 0.29 9.9E-06 48.2 3.1 20 82-101 48-67 (311)
449 2xzl_A ATP-dependent helicase 87.3 0.42 1.4E-05 54.0 4.7 36 67-102 361-396 (802)
450 3lxx_A GTPase IMAP family memb 87.2 0.24 8.2E-06 46.9 2.3 21 83-103 31-51 (239)
451 2r44_A Uncharacterized protein 87.2 0.3 1E-05 48.8 3.1 34 68-101 33-66 (331)
452 3v9p_A DTMP kinase, thymidylat 87.2 0.23 7.9E-06 47.0 2.1 24 78-101 22-45 (227)
453 4tmk_A Protein (thymidylate ki 87.2 0.29 9.9E-06 45.8 2.8 22 80-101 2-23 (213)
454 2xb4_A Adenylate kinase; ATP-b 87.2 0.26 8.8E-06 46.3 2.4 19 83-101 2-20 (223)
455 2bjv_A PSP operon transcriptio 87.0 0.38 1.3E-05 46.3 3.6 26 78-103 26-51 (265)
456 2ged_A SR-beta, signal recogni 87.0 0.26 8.9E-06 44.5 2.3 25 80-104 47-71 (193)
457 1kao_A RAP2A; GTP-binding prot 86.9 0.27 9.2E-06 42.8 2.3 22 83-104 5-26 (167)
458 3crm_A TRNA delta(2)-isopenten 86.9 0.24 8.1E-06 49.5 2.1 20 82-101 6-25 (323)
459 2qgz_A Helicase loader, putati 86.8 0.47 1.6E-05 47.0 4.3 22 81-102 152-173 (308)
460 3be4_A Adenylate kinase; malar 86.8 0.33 1.1E-05 45.3 2.9 21 81-101 5-25 (217)
461 1ky3_A GTP-binding protein YPT 86.8 0.27 9.4E-06 43.6 2.3 22 83-104 10-31 (182)
462 2iyv_A Shikimate kinase, SK; t 86.7 0.24 8.3E-06 44.6 1.9 20 82-101 3-22 (184)
463 3r20_A Cytidylate kinase; stru 86.7 0.31 1.1E-05 46.3 2.7 22 80-101 8-29 (233)
464 1e4v_A Adenylate kinase; trans 86.7 0.28 9.6E-06 45.6 2.4 19 83-101 2-20 (214)
465 1g16_A RAS-related protein SEC 86.7 0.28 9.6E-06 43.0 2.3 22 83-104 5-26 (170)
466 4edh_A DTMP kinase, thymidylat 86.7 0.27 9.3E-06 46.0 2.3 23 79-101 4-26 (213)
467 1u8z_A RAS-related protein RAL 86.7 0.28 9.7E-06 42.7 2.3 22 83-104 6-27 (168)
468 1ek0_A Protein (GTP-binding pr 86.6 0.29 9.8E-06 42.9 2.3 22 83-104 5-26 (170)
469 1z0j_A RAB-22, RAS-related pro 86.6 0.28 9.7E-06 43.0 2.3 23 83-105 8-30 (170)
470 1c1y_A RAS-related protein RAP 86.6 0.29 9.9E-06 42.8 2.3 22 83-104 5-26 (167)
471 3m6a_A ATP-dependent protease 86.6 0.29 9.9E-06 52.7 2.7 22 80-101 107-128 (543)
472 2erx_A GTP-binding protein DI- 86.6 0.29 9.8E-06 43.0 2.3 21 83-103 5-25 (172)
473 3pqc_A Probable GTP-binding pr 86.5 0.28 9.4E-06 44.2 2.2 22 83-104 25-46 (195)
474 1svi_A GTP-binding protein YSX 86.4 0.3 1E-05 44.1 2.4 23 81-103 23-45 (195)
475 3lv8_A DTMP kinase, thymidylat 86.4 0.34 1.2E-05 46.1 2.8 22 80-101 26-47 (236)
476 1z08_A RAS-related protein RAB 86.4 0.3 1E-05 42.9 2.3 22 83-104 8-29 (170)
477 4b4t_K 26S protease regulatory 86.3 0.37 1.3E-05 50.1 3.2 60 41-102 166-227 (428)
478 3nbx_X ATPase RAVA; AAA+ ATPas 86.3 0.85 2.9E-05 48.4 6.1 40 63-102 23-62 (500)
479 1wms_A RAB-9, RAB9, RAS-relate 86.2 0.3 1E-05 43.2 2.3 22 83-104 9-30 (177)
480 3tmk_A Thymidylate kinase; pho 86.1 0.36 1.2E-05 45.3 2.8 22 80-101 4-25 (216)
481 2nzj_A GTP-binding protein REM 86.0 0.31 1.1E-05 42.9 2.3 20 83-102 6-25 (175)
482 4ag6_A VIRB4 ATPase, type IV s 86.0 0.29 9.8E-06 50.3 2.2 24 80-103 34-57 (392)
483 3q85_A GTP-binding protein REM 85.9 0.33 1.1E-05 42.6 2.3 20 83-102 4-23 (169)
484 3q72_A GTP-binding protein RAD 85.9 0.3 1E-05 42.8 2.0 20 83-102 4-23 (166)
485 1ak2_A Adenylate kinase isoenz 85.9 0.37 1.3E-05 45.5 2.8 22 80-101 15-36 (233)
486 1r2q_A RAS-related protein RAB 85.7 0.34 1.2E-05 42.4 2.3 22 83-104 8-29 (170)
487 1ega_A Protein (GTP-binding pr 85.7 0.35 1.2E-05 47.8 2.6 23 82-104 9-31 (301)
488 2lkc_A Translation initiation 85.7 0.39 1.3E-05 42.5 2.7 24 80-103 7-30 (178)
489 2fn4_A P23, RAS-related protei 85.6 0.34 1.2E-05 43.0 2.3 22 83-104 11-32 (181)
490 1ko7_A HPR kinase/phosphatase; 85.6 1.2 4.2E-05 44.0 6.5 55 51-105 92-168 (314)
491 2grj_A Dephospho-COA kinase; T 85.5 0.36 1.2E-05 44.3 2.4 22 80-101 11-32 (192)
492 3ake_A Cytidylate kinase; CMP 85.5 0.36 1.2E-05 44.3 2.4 19 83-101 4-22 (208)
493 2y8e_A RAB-protein 6, GH09086P 85.5 0.35 1.2E-05 42.8 2.3 22 83-104 16-37 (179)
494 1moz_A ARL1, ADP-ribosylation 85.4 0.27 9.2E-06 43.9 1.5 22 81-102 18-39 (183)
495 1a7j_A Phosphoribulokinase; tr 85.4 0.29 1E-05 48.1 1.8 22 80-101 4-25 (290)
496 4b4t_L 26S protease subunit RP 85.4 0.39 1.3E-05 50.0 2.9 60 41-102 175-236 (437)
497 1lkx_A Myosin IE heavy chain; 85.3 0.83 2.9E-05 50.4 5.6 60 41-100 46-113 (697)
498 3tw8_B RAS-related protein RAB 85.3 0.33 1.1E-05 43.1 2.0 21 83-103 11-31 (181)
499 3k53_A Ferrous iron transport 85.3 0.37 1.2E-05 46.7 2.5 20 83-102 5-24 (271)
500 4hlc_A DTMP kinase, thymidylat 85.3 0.35 1.2E-05 44.9 2.2 20 81-100 2-21 (205)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=7.8e-88 Score=763.18 Aligned_cols=518 Identities=67% Similarity=1.079 Sum_probs=476.9
Q ss_pred ccccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEE
Q 008221 40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMI 119 (573)
Q Consensus 40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i 119 (573)
+.+.++|+++++++++.+.++.++.+|++.+|+.++..+..|++++++|||||||||+++.+++.... .. ..+..+
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~-~~---~~g~~i 143 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEM-PH---LENTQV 143 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHC-GG---GGTCEE
T ss_pred cCCCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhcc-cc---CCCceE
Confidence 34578899999999999999999999999999999999999999999999999999999988664322 11 113446
Q ss_pred EEecCcccccccHHHHHHHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCccc
Q 008221 120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLA 199 (573)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~ 199 (573)
++++|++..+.+++++++..++..++..+|+.++++.....++.|.++|+|++++.++.+.++.++++||+||+|+|.++
T Consensus 144 lvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld 223 (773)
T 2xau_A 144 ACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLA 223 (773)
T ss_dssp EEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHH
T ss_pred EecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccc
Confidence 67889999889999999999988889999988877766666788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecccccHHHHHchhCCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCC
Q 008221 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPS 279 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~~~~iil~SATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~ 279 (573)
.+.++.+++.+...+++.++|+||||++.+.+++||.+++++.++|+.+||+++|...+..++....+..+..++....+
T Consensus 224 ~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 303 (773)
T 2xau_A 224 TDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEA 303 (773)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCS
T ss_pred hHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCC
Confidence 99999999999888889999999999999999999999999999999999999999988888888888888888887788
Q ss_pred CCEEEecCcHHHHHHHHHHHHHHHhhc--CCCCCCeEEEEecCCCCHHHHhhhcCCCC-----CCCCCCCCCCceEEEee
Q 008221 280 GDILVFLTGEEEIEDACRKITKEITNM--GDQVGPVKVVPLYSTLPPAMQQKIFEPAP-----PPSKEGGPPGRKIVVST 352 (573)
Q Consensus 280 g~iLVFl~~~~~i~~~~~~L~~~~~~~--~~~~~~~~v~~lh~~l~~~~r~~~~~~~~-----~g~~~~~~~~~kvllaT 352 (573)
|++|||+||+.+++.+++.|.+....+ .....++.+.++||+|++++|.++++.|+ .|. ++|||||
T Consensus 304 g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~-------~kVlVAT 376 (773)
T 2xau_A 304 GDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPG-------RKVVIST 376 (773)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCC-------EEEEEEC
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCc-------eEEEEeC
Confidence 999999999999999999998633221 11234789999999999999999999999 777 9999999
Q ss_pred cccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhhhhcCCCChhh
Q 008221 353 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPE 432 (573)
Q Consensus 353 ~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~~~~~~~pe 432 (573)
|+||+|||||+|++|||+|+.|.+.|||..+++.|.+.|+|+++|.||+|||||.++|.||+||+++++...+.++..||
T Consensus 377 ~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pE 456 (773)
T 2xau_A 377 NIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPE 456 (773)
T ss_dssp THHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCG
T ss_pred cHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977899999999
Q ss_pred hhccCchhHHHHHHHcCCCccccccCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhhhcCCCChhhhhhhhhCCCC
Q 008221 433 ILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKY 512 (573)
Q Consensus 433 i~r~~l~~~~L~~k~~~~~~~~~~~~~~pP~~~~~~~a~~~L~~lgald~~~~lT~lG~~~~~lp~~p~~~~~l~~~~~~ 512 (573)
|++.+|.+++|+++.+|+.++..|+|++||+++++..|++.|..+||||++|+||++|+.|+.||++|++||||+.|..+
T Consensus 457 i~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~ 536 (773)
T 2xau_A 457 ILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEF 536 (773)
T ss_dssp GGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGG
T ss_pred cccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcCCCcccCChhhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHc
Q 008221 513 NCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQN 568 (573)
Q Consensus 513 ~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~~~~sD~~~~l~~~~~~~~~ 568 (573)
+|.+++++|||+|+++++|..|...+++++.++..|.+..|||++++|+|++|.+.
T Consensus 537 ~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~ 592 (773)
T 2xau_A 537 QCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSD 592 (773)
T ss_dssp TCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSH
T ss_pred CchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999653
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=5e-53 Score=479.47 Aligned_cols=467 Identities=18% Similarity=0.162 Sum_probs=342.7
Q ss_pred CccCCCCCChHHHHHHHHhcCCCChHHHHHHHHH-HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEe
Q 008221 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~-i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t 122 (573)
-+|+++++++++.+.++.+++..++++|.++++. +.+|++++++||||||||+++++++++... . .+..++++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~-~-----~~~~il~i 81 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLL-K-----NGGKAIYV 81 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHH-H-----SCSEEEEE
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHH-H-----CCCeEEEE
Confidence 3699999999999999999999999999999999 889999999999999999999988875432 0 12457788
Q ss_pred cCcccccccHHHHHH--HhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCccc
Q 008221 123 QPRRVAAMSVSRRVA--EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (573)
Q Consensus 123 ~p~~~~~~~v~~~v~--~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~ 199 (573)
.|++..+.++++++. ...+..++..+|+..+..... .+..|.++|+|++.+++..+.. +.+++++|+||+|+. .
T Consensus 82 ~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l--~ 158 (715)
T 2va8_A 82 TPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYL--N 158 (715)
T ss_dssp CSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGG--G
T ss_pred eCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhc--C
Confidence 899887788888873 233556666667654444322 3678999999999998877765 899999999999973 2
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccc-HHHHHchhCCCCeeeecCcccCCccccc--------------CCCchhH--
Q 008221 200 TDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGYFYGAPLMKVPGRLHPVEIFYT--------------QEPERDY-- 262 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~~~~iil~SATl~-~~~~~~~~~~~~~i~v~g~~~~v~~~y~--------------~~~~~~~-- 262 (573)
.+.....++.+....++.++|++|||++ .+.+++|++ ++.+...++..|++.++. .......
T Consensus 159 ~~~~~~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (715)
T 2va8_A 159 DPERGPVVESVTIRAKRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHG 237 (715)
T ss_dssp CTTTHHHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred CcccchHHHHHHHhcccCcEEEEcCCCCCHHHHHHHhC-CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhccc
Confidence 2222233333333323789999999995 788999886 566667777777654432 1100000
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhh--cC--------------CC-----------CCCeEE
Q 008221 263 LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITN--MG--------------DQ-----------VGPVKV 315 (573)
Q Consensus 263 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~--~~--------------~~-----------~~~~~v 315 (573)
.......+...+ ..++++|||+||+.+++.+++.|.+.... +. .. .-...+
T Consensus 238 ~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v 315 (715)
T 2va8_A 238 DDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGV 315 (715)
T ss_dssp SSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTE
T ss_pred chHHHHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCE
Confidence 012333444443 35689999999999999999999864211 00 00 001248
Q ss_pred EEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHh
Q 008221 316 VPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKA 395 (573)
Q Consensus 316 ~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~ 395 (573)
.++||+|++++|..+++.|++|. ++||||||++|+|||+|++++|||+ ..+||+..+.. ..|.|.+
T Consensus 316 ~~~h~~l~~~~r~~v~~~f~~g~-------~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~ 381 (715)
T 2va8_A 316 AYHHAGLSKALRDLIEEGFRQRK-------IKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIM 381 (715)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTC-------SCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHH
T ss_pred EEECCCCCHHHHHHHHHHHHcCC-------CeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHH
Confidence 88999999999999999999998 9999999999999999999999996 45677655443 4599999
Q ss_pred hHHHhccccCCCC---CCeEEeccchhh-hhhhcC--CCChhhhhccCchh------HHHHHHHcCCC----ccccc---
Q 008221 396 SAHQRSGRAGRTQ---PGKCFRLYTEKS-FNNDLQ--PQTYPEILRSNLAN------TVLTLKKLGID----DLVHF--- 456 (573)
Q Consensus 396 ~~~qR~GRaGR~~---~G~~~~l~t~~~-~~~~~~--~~~~pei~r~~l~~------~~L~~k~~~~~----~~~~~--- 456 (573)
+|.||+|||||.+ +|.||++|++.+ +...+. ....||+.++++.+ .+|.+..+|.- ++..|
T Consensus 382 ~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~ 461 (715)
T 2va8_A 382 EYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYE 461 (715)
T ss_dssp HHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTT
T ss_pred HHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHh
Confidence 9999999999996 899999998766 322121 13568999988876 56777777632 22222
Q ss_pred cCCC-CCcHHHHHHHHHHHHHcCCccCCC---CcChhhhhhhcCCCChhhhhhhhhCCCC---CCHHHHHHHHHhhc-CC
Q 008221 457 DFMD-PPAPETLMRALEVLNYLGALDDDG---NLTEMGEKMSEFPLDPQMSKMLVESPKY---NCSNEILSISAMLS-VP 528 (573)
Q Consensus 457 ~~~~-pP~~~~~~~a~~~L~~lgald~~~---~lT~lG~~~~~lp~~p~~~~~l~~~~~~---~c~~~~~~i~a~l~-~~ 528 (573)
.|+. +|+...++.|++.|.++|+|+.++ .+|++|+.++.+|++|..+++++.+... .|..+++.|+|+.+ .+
T Consensus 462 ~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~ 541 (715)
T 2va8_A 462 SLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGP 541 (715)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSC
T ss_pred hHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccc
Confidence 3443 455667999999999999998774 7999999999999999999999998876 79999999888766 47
Q ss_pred CcccCChh
Q 008221 529 NCFVRPRE 536 (573)
Q Consensus 529 ~~f~~~~~ 536 (573)
++|.++.+
T Consensus 542 ~~~~r~~e 549 (715)
T 2va8_A 542 LVSVGRNE 549 (715)
T ss_dssp CCCCCHHH
T ss_pred cCccChHH
Confidence 88877654
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.6e-51 Score=465.97 Aligned_cols=460 Identities=15% Similarity=0.138 Sum_probs=347.7
Q ss_pred ccCCCC--CChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEe
Q 008221 45 RWNGKP--YSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (573)
Q Consensus 45 ~f~~~~--l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t 122 (573)
+|++++ +++++.+.++.+++..++++|.++++.+.+|++++++||||||||+++..++++... . +..+++.
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~------~~~~l~i 74 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-K------GGKSLYV 74 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-T------TCCEEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH-h------CCcEEEE
Confidence 477788 999999999999999999999999999999999999999999999999988775432 1 2235666
Q ss_pred cCcccccccHHHHHHH--hhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCc----
Q 008221 123 QPRRVAAMSVSRRVAE--EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHE---- 195 (573)
Q Consensus 123 ~p~~~~~~~v~~~v~~--~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~---- 195 (573)
.|++..+.++++++.. ..+..++..+|+....... .....|.++|+|++.+++..+.. +.+++++|+||+|+
T Consensus 75 ~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~-~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~ 153 (702)
T 2p6r_A 75 VPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEH-LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSE 153 (702)
T ss_dssp ESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSSC-STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCT
T ss_pred eCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchhh-ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCC
Confidence 7887777777777732 2345566666655444332 23678999999999998877665 89999999999997
Q ss_pred -CcccHHHHHHHHHHHHHhCCCcEEEEeccccc-HHHHHchhCCCCeeeecCcccCCcccccCCCchhHHH---------
Q 008221 196 -RTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLE--------- 264 (573)
Q Consensus 196 -r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~-~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~--------- 264 (573)
|....+.++..++ ...++.++|++|||++ .+.+++|++ ++.+..+++..|++.++...+...+..
T Consensus 154 ~r~~~~~~ll~~l~---~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~ 229 (702)
T 2p6r_A 154 KRGATLEILVTKMR---RMNKALRVIGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRV 229 (702)
T ss_dssp TTHHHHHHHHHHHH---HHCTTCEEEEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEEC
T ss_pred CcccHHHHHHHHHH---hcCcCceEEEECCCcCCHHHHHHHhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhh
Confidence 3333444444443 3355899999999996 788888886 667777888888776543222100000
Q ss_pred HHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCC----------C-----------CeEEEEecCCCC
Q 008221 265 AAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQV----------G-----------PVKVVPLYSTLP 323 (573)
Q Consensus 265 ~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~----------~-----------~~~v~~lh~~l~ 323 (573)
.....+..... +.+++|||++++.+++.++..|........... . +..+..+||+|+
T Consensus 230 ~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 307 (702)
T 2p6r_A 230 KFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLL 307 (702)
T ss_dssp CHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSC
T ss_pred hHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCC
Confidence 02223333332 568999999999999999999986532110000 0 123778999999
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccc
Q 008221 324 PAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGR 403 (573)
Q Consensus 324 ~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GR 403 (573)
+++|..+++.|++|. ++||||||++|+|||+|++++||++ ...||.. ..|.|.++|.||+||
T Consensus 308 ~~~R~~v~~~f~~g~-------~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd~~-------~~~~s~~~~~Qr~GR 369 (702)
T 2p6r_A 308 NGQRRVVEDAFRRGN-------IKVVVATPTLAAGVNLPARRVIVRS----LYRFDGY-------SKRIKVSEYKQMAGR 369 (702)
T ss_dssp HHHHHHHHHHHHTTS-------CCEEEECSTTTSSSCCCBSEEEECC----SEEESSS-------EEECCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCC-------CeEEEECcHHhccCCCCceEEEEcC----ceeeCCC-------CCcCCHHHHHHHhhh
Confidence 999999999999998 9999999999999999999999996 4567711 349999999999999
Q ss_pred cCCCC---CCeEEeccchhhhhhhcC--CCChhhhhccCchh------HHHHHHHcCCC----ccccc---cCC----CC
Q 008221 404 AGRTQ---PGKCFRLYTEKSFNNDLQ--PQTYPEILRSNLAN------TVLTLKKLGID----DLVHF---DFM----DP 461 (573)
Q Consensus 404 aGR~~---~G~~~~l~t~~~~~~~~~--~~~~pei~r~~l~~------~~L~~k~~~~~----~~~~~---~~~----~p 461 (573)
|||.+ +|.||.++++.+++..+. -...||+.+++|.+ .++.+..+|.. ++..+ .|+ ++
T Consensus 370 aGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~ 449 (702)
T 2p6r_A 370 AGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEI 449 (702)
T ss_dssp BSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCC
T ss_pred cCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhH
Confidence 99996 899999999988643222 24568999988876 56666666632 22211 222 36
Q ss_pred CcHHHHHHHHHHHHHcCCccCC--CCcChhhhhhhcCCCChhhhhhhhhCCCC--CCHHHHHHHHHhhcC-CCcccCChh
Q 008221 462 PAPETLMRALEVLNYLGALDDD--GNLTEMGEKMSEFPLDPQMSKMLVESPKY--NCSNEILSISAMLSV-PNCFVRPRE 536 (573)
Q Consensus 462 P~~~~~~~a~~~L~~lgald~~--~~lT~lG~~~~~lp~~p~~~~~l~~~~~~--~c~~~~~~i~a~l~~-~~~f~~~~~ 536 (573)
|..+.++.|++.|.+.|+|+.+ +.+|++|+.++.+|++|..+++++.+... .|..+++.|+|+.+. ++++.++.+
T Consensus 450 ~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e 529 (702)
T 2p6r_A 450 SLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD 529 (702)
T ss_dssp CCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT
T ss_pred HHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch
Confidence 8889999999999999999977 78999999999999999999999999988 899999999887765 678887765
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4.5e-49 Score=447.03 Aligned_cols=465 Identities=15% Similarity=0.104 Sum_probs=330.3
Q ss_pred ccCCCCCChHHHHHHHHhcCCCChHHHHHHHHH-HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEec
Q 008221 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (573)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~-i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (573)
+|+++++++++.+.++.+++..++++|.++++. +.+|++++++||||||||+++..++++... . .+..+++..
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~-~-----~~~~~l~i~ 75 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRIL-T-----QGGKAVYIV 75 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHH-H-----HCSEEEEEC
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHH-h-----CCCEEEEEc
Confidence 589999999999999999999999999999998 899999999999999999999877764332 0 123567778
Q ss_pred CcccccccHHHHHHH--hhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcc-c
Q 008221 124 PRRVAAMSVSRRVAE--EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTL-A 199 (573)
Q Consensus 124 p~~~~~~~v~~~v~~--~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~-~ 199 (573)
|++..+.++++++.. ..+..++..+|.. ...........|.++|+|++..++..... +.+++++|+||+|.-.. .
T Consensus 76 P~raLa~q~~~~~~~l~~~g~~v~~~~G~~-~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (720)
T 2zj8_A 76 PLKALAEEKFQEFQDWEKIGLRVAMATGDY-DSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRD 154 (720)
T ss_dssp SSGGGHHHHHHHTGGGGGGTCCEEEECSCS-SCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT
T ss_pred CcHHHHHHHHHHHHHHHhcCCEEEEecCCC-CccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCc
Confidence 888888888888742 2234444444421 12222233678899999999988877655 88999999999994111 1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecccc-cHHHHHchhCCCCeeeecCcccCCcccccCCCchhH-------HHHHHHHHH
Q 008221 200 TDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDY-------LEAAIRTVV 271 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~~~~iil~SATl-~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~-------~~~~~~~l~ 271 (573)
....++.+-...+ ++.++|++|||+ +.+.+++|++ ++.+...++..|++.++...+...+ .......+.
T Consensus 155 r~~~~~~ll~~l~--~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (720)
T 2zj8_A 155 RGATLEVILAHML--GKAQIIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVY 231 (720)
T ss_dssp THHHHHHHHHHHB--TTBEEEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHH
T ss_pred ccHHHHHHHHHhh--cCCeEEEEcCCcCCHHHHHHHhC-CcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHH
Confidence 1222222222112 278999999999 5788888885 4445555565555443221110000 011122333
Q ss_pred HHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCC------------CC------------CCeEEEEecCCCCHHHH
Q 008221 272 QIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGD------------QV------------GPVKVVPLYSTLPPAMQ 327 (573)
Q Consensus 272 ~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~------------~~------------~~~~v~~lh~~l~~~~r 327 (573)
+.+. ..+++|||++++.+++.++..|.+....... .. -...+.++||+|++++|
T Consensus 232 ~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 309 (720)
T 2zj8_A 232 DAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDER 309 (720)
T ss_dssp HHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred HHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHH
Confidence 3332 4589999999999999999999864321000 00 01238899999999999
Q ss_pred hhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC
Q 008221 328 QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT 407 (573)
Q Consensus 328 ~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~ 407 (573)
..+++.|+.|. ++|||||+++|+|||+|++++||+.+ ..|| ..+ ..|.|.++|.||+|||||.
T Consensus 310 ~~v~~~f~~g~-------~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~ 372 (720)
T 2zj8_A 310 VLVEENFRKGI-------IKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRP 372 (720)
T ss_dssp HHHHHHHHTTS-------SCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCT
T ss_pred HHHHHHHHCCC-------CeEEEECcHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCC
Confidence 99999999998 99999999999999999999999954 3455 122 1399999999999999998
Q ss_pred C---CCeEEeccchhhhhh---hcCCCChhhhhcc-----CchhHHHHHHHcCCC----cccc---ccCC------CCCc
Q 008221 408 Q---PGKCFRLYTEKSFNN---DLQPQTYPEILRS-----NLANTVLTLKKLGID----DLVH---FDFM------DPPA 463 (573)
Q Consensus 408 ~---~G~~~~l~t~~~~~~---~~~~~~~pei~r~-----~l~~~~L~~k~~~~~----~~~~---~~~~------~pP~ 463 (573)
+ +|.||.++++.+++. .+.....+++... .|...++.....|.. ++.. +.|+ ++|.
T Consensus 373 g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~ 452 (720)
T 2zj8_A 373 KYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSL 452 (720)
T ss_dssp TTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHH
T ss_pred CCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHH
Confidence 5 799999999876422 1222233333222 233344555555531 1211 1332 2334
Q ss_pred HHHHHHHHHHHHHcCCcc-CCC---CcChhhhhhhcCCCChhhhhhhhhCCCC----CCHHHHHHHHHhhcC-CCcccCC
Q 008221 464 PETLMRALEVLNYLGALD-DDG---NLTEMGEKMSEFPLDPQMSKMLVESPKY----NCSNEILSISAMLSV-PNCFVRP 534 (573)
Q Consensus 464 ~~~~~~a~~~L~~lgald-~~~---~lT~lG~~~~~lp~~p~~~~~l~~~~~~----~c~~~~~~i~a~l~~-~~~f~~~ 534 (573)
.+.+..|++.|...|+|+ .++ .+|++|+.++.+|++|..+++++.+... .|..+++.|+|+.+. ++.|.++
T Consensus 453 ~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~ 532 (720)
T 2zj8_A 453 EEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSK 532 (720)
T ss_dssp HHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCH
T ss_pred HHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCH
Confidence 578999999999999998 665 6999999999999999999999998877 899999999999886 7888887
Q ss_pred hhhH
Q 008221 535 REAQ 538 (573)
Q Consensus 535 ~~~~ 538 (573)
.+..
T Consensus 533 ~e~~ 536 (720)
T 2zj8_A 533 REFE 536 (720)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5533
No 5
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=5.3e-42 Score=366.43 Aligned_cols=340 Identities=16% Similarity=0.201 Sum_probs=251.4
Q ss_pred ccccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccC----CChhhcC
Q 008221 40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI----ETPDRRR 115 (573)
Q Consensus 40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~----~~~~~~~ 115 (573)
..+..+|+++++++.+++.+..+++..++++|.++++.+.+|++++++++||||||+++..+++..... ......+
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 131 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQ 131 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCS
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCcc
Confidence 345678999999999999999999999999999999999999999999999999999887665533210 1111234
Q ss_pred ceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeecc--cccccccccccCHHHHHHHHhcccc-cCCCcEEEEeC
Q 008221 116 KMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDE 192 (573)
Q Consensus 116 ~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDE 192 (573)
.++++|++++..+....++.+....+..++..+|....... .......|.+.|+|++.+++....+ +.+++++|+||
T Consensus 132 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDE 211 (434)
T 2db3_A 132 VVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDE 211 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEET
T ss_pred EEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEcc
Confidence 45566666666555555555544444444333332211110 0112457889999999998876554 88999999999
Q ss_pred CCcCcccHHHHHHHHHHHHHh---CCCcEEEEecccccH--HHHH-chhCCCCeeeecC---cccCCcccccCCCchhHH
Q 008221 193 AHERTLATDVLFGLLKEVLKN---RPDLKLVVMSATLEA--EKFQ-GYFYGAPLMKVPG---RLHPVEIFYTQEPERDYL 263 (573)
Q Consensus 193 a~~r~~~~d~ll~~l~~l~~~---~~~~~iil~SATl~~--~~~~-~~~~~~~~i~v~g---~~~~v~~~y~~~~~~~~~ 263 (573)
||. ..+. .+...++.+... .++.+++++|||++. ..++ .++.+...+.+.. ....+.+.+......++.
T Consensus 212 ah~-~~~~-gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 289 (434)
T 2db3_A 212 ADR-MLDM-GFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKR 289 (434)
T ss_dssp HHH-HTST-TTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHH
T ss_pred Hhh-hhcc-CcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHH
Confidence 994 3333 344555555543 358899999999964 3344 4454443333322 234556666555555555
Q ss_pred HHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCC
Q 008221 264 EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 343 (573)
Q Consensus 264 ~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~ 343 (573)
..+...+ .... +++|||++++.+++.+++.|... ++.+..+||++++.+|.++++.|+.|.
T Consensus 290 ~~l~~~l----~~~~-~~~lVF~~t~~~a~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~l~~F~~g~----- 350 (434)
T 2db3_A 290 SKLIEIL----SEQA-DGTIVFVETKRGADFLASFLSEK---------EFPTTSIHGDRLQSQREQALRDFKNGS----- 350 (434)
T ss_dssp HHHHHHH----HHCC-TTEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTTSCHHHHHHHHHHHHTSS-----
T ss_pred HHHHHHH----HhCC-CCEEEEEeCcHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHHHcCC-----
Confidence 4444333 2223 34999999999999999999874 788999999999999999999999988
Q ss_pred CCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhh
Q 008221 344 PGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (573)
Q Consensus 344 ~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (573)
.+||||||++++|||||+|++||++++ |.+.++|+||+|||||. ++|.|+.||++++
T Consensus 351 --~~vLvaT~v~~rGlDi~~v~~VI~~d~------------------p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~ 408 (434)
T 2db3_A 351 --MKVLIATSVASRGLDIKNIKHVINYDM------------------PSKIDDYVHRIGRTGRVGNNGRATSFFDPEK 408 (434)
T ss_dssp --CSEEEECGGGTSSCCCTTCCEEEESSC------------------CSSHHHHHHHHTTSSCTTCCEEEEEEECTTT
T ss_pred --CcEEEEchhhhCCCCcccCCEEEEECC------------------CCCHHHHHHHhcccccCCCCCEEEEEEeccc
Confidence 899999999999999999999999999 99999999999999999 8999999999543
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=361.09 Aligned_cols=341 Identities=14% Similarity=0.220 Sum_probs=235.5
Q ss_pred cccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEE
Q 008221 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (573)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~ 120 (573)
....+|+++++++++++.+..+++..++++|.++++.+.+|+++++.+|||||||+++..++++.... .....+.++++
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~ 115 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL-DLKATQALVLA 115 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT-TSCSCCEEEEC
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh-cCCceeEEEEe
Confidence 44578999999999999999999999999999999999999999999999999999988777654331 11112334444
Q ss_pred EecCcccccccHHHHHHHhhhhcccchhceeee---ecccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcC
Q 008221 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIR---FEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHER 196 (573)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~---~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r 196 (573)
|++.+..+.....+.+....+..+...+|.... ..........+.++|+|++.+.+..+.+ +.++++||+||+|.
T Consensus 116 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~- 194 (414)
T 3eiq_A 116 PTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE- 194 (414)
T ss_dssp SSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH-
T ss_pred ChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH-
Confidence 444444443333333333333333322221110 0111113457889999999998877665 78899999999996
Q ss_pred cccHHHHHHHHHHHHHh-CCCcEEEEecccccHH--HH-HchhCCCCeeeecCcc---cCCcccccCCCchhHHHHHHHH
Q 008221 197 TLATDVLFGLLKEVLKN-RPDLKLVVMSATLEAE--KF-QGYFYGAPLMKVPGRL---HPVEIFYTQEPERDYLEAAIRT 269 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~-~~~~~iil~SATl~~~--~~-~~~~~~~~~i~v~g~~---~~v~~~y~~~~~~~~~~~~~~~ 269 (573)
+....+...+..+... .++.+++++|||++.. .+ ..++.+...+.+.... ..+.++|......+. ....
T Consensus 195 -~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 270 (414)
T 3eiq_A 195 -MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW---KLDT 270 (414)
T ss_dssp -HHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTT---HHHH
T ss_pred -hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHh---HHHH
Confidence 3333334444444443 3589999999999653 33 3455444444333322 234455544433331 2234
Q ss_pred HHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEE
Q 008221 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (573)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (573)
+..+......+++|||++++.+++.+++.|... ++.+..+||++++.+|.++++.|+.|. .+||
T Consensus 271 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~-------~~vl 334 (414)
T 3eiq_A 271 LCDLYETLTITQAVIFINTRRKVDWLTEKMHAR---------DFTVSAMHGDMDQKERDVIMREFRSGS-------SRVL 334 (414)
T ss_dssp HHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT---------TCCCEEC---CHHHHHHHHHHHHSCC----------CE
T ss_pred HHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc---------CCeEEEecCCCCHHHHHHHHHHHHcCC-------CcEE
Confidence 444555567789999999999999999999864 678999999999999999999999988 8999
Q ss_pred EeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 350 laT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|||+++++|+|+|++++||+++. |.|..+|+||+|||||. ++|.||.||++.+.
T Consensus 335 v~T~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 389 (414)
T 3eiq_A 335 ITTDLLARGIDVQQVSLVINYDL------------------PTNRENYIHRIGRGGRFGRKGVAINMVTEEDK 389 (414)
T ss_dssp EECSSCC--CCGGGCSCEEESSC------------------CSSTHHHHHHSCCC-------CEEEEECSTHH
T ss_pred EECCccccCCCccCCCEEEEeCC------------------CCCHHHhhhhcCcccCCCCCceEEEEEcHHHH
Confidence 99999999999999999999999 99999999999999999 78999999998776
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=5.6e-40 Score=347.86 Aligned_cols=340 Identities=16% Similarity=0.220 Sum_probs=243.2
Q ss_pred cccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEE
Q 008221 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (573)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~ 120 (573)
....+|+++++++++.+.+...++..++++|.++++.+.+|+++++.+|||||||+++..+++...... ....+.++++
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~ 112 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-VRETQALILA 112 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-SCSCCEEEEC
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-cCCceEEEEc
Confidence 345679999999999999999999999999999999999999999999999999999887777654311 1112334444
Q ss_pred EecCcccccccHHHHHHHhhhhcccchhceeeeeccc--ccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCc
Q 008221 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERT 197 (573)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~ 197 (573)
|++.+..+.......+....+..+....|........ ......+.+.|+|++...+....+ +.+++++|+||+|.
T Consensus 113 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~-- 190 (410)
T 2j0s_A 113 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE-- 190 (410)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH--
T ss_pred CcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH--
Confidence 4444433333333333222233322222211100000 012346788999999988876655 78899999999995
Q ss_pred ccHHHHHHHHHHHHHhC-CCcEEEEecccccHHH--HH-chhCCCCeeeecCc---ccCCcccccCCCchh-HHHHHHHH
Q 008221 198 LATDVLFGLLKEVLKNR-PDLKLVVMSATLEAEK--FQ-GYFYGAPLMKVPGR---LHPVEIFYTQEPERD-YLEAAIRT 269 (573)
Q Consensus 198 ~~~d~ll~~l~~l~~~~-~~~~iil~SATl~~~~--~~-~~~~~~~~i~v~g~---~~~v~~~y~~~~~~~-~~~~~~~~ 269 (573)
+....+...+..+.... ++.+++++|||++.+. +. .++.++..+.+... ...+.++|......+ +...
T Consensus 191 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---- 266 (410)
T 2j0s_A 191 MLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDT---- 266 (410)
T ss_dssp HTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHH----
T ss_pred HHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHH----
Confidence 22223344455554433 4789999999997543 23 34443333333221 223455554433333 3332
Q ss_pred HHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEE
Q 008221 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (573)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (573)
+..+......+++|||++++.+++.+++.|... ++.+..+||++++.+|.++++.|+.|. .+||
T Consensus 267 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~-------~~vl 330 (410)
T 2j0s_A 267 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSGA-------SRVL 330 (410)
T ss_dssp HHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHHTS-------SCEE
T ss_pred HHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC---------CCceEEeeCCCCHHHHHHHHHHHHCCC-------CCEE
Confidence 223333335568999999999999999999874 678999999999999999999999988 8999
Q ss_pred EeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 350 laT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|||+++++|+|+|++++||++|+ |.+.++|+||+|||||. ++|.||.++++.+.
T Consensus 331 v~T~~~~~Gidi~~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (410)
T 2j0s_A 331 ISTDVWARGLDVPQVSLIINYDL------------------PNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385 (410)
T ss_dssp EECGGGSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGH
T ss_pred EECChhhCcCCcccCCEEEEECC------------------CCCHHHHHHhcccccCCCCceEEEEEecHHHH
Confidence 99999999999999999999998 99999999999999999 89999999998775
No 8
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=344.40 Aligned_cols=342 Identities=16% Similarity=0.158 Sum_probs=243.2
Q ss_pred cccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCC-----------
Q 008221 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIE----------- 109 (573)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~----------- 109 (573)
.+..+|+++++++++.+.+..+++..++++|.++++.+..|+++++.+|||||||+++..+++......
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 345679999999999999999999999999999999999999999999999999998776555322100
Q ss_pred ------ChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeecc--cccccccccccCHHHHHHHHhcccc
Q 008221 110 ------TPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL 181 (573)
Q Consensus 110 ------~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l 181 (573)
.....+.++++|++++..+....+..+....+..+....|....... .......|.++|+|++.+.+....+
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~ 171 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKI 171 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSB
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCc
Confidence 00012234444544444443333333333233333222221110000 0112356889999999998877665
Q ss_pred -cCCCcEEEEeCCCcCcccHHHHHHHHHHHHHh--C---CCcEEEEecccccH--HHHHchhCCCCeeeecCc----ccC
Q 008221 182 -LERYKVIVLDEAHERTLATDVLFGLLKEVLKN--R---PDLKLVVMSATLEA--EKFQGYFYGAPLMKVPGR----LHP 249 (573)
Q Consensus 182 -l~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~--~---~~~~iil~SATl~~--~~~~~~~~~~~~i~v~g~----~~~ 249 (573)
+.+++++|+||+|. +....+...++.+... . ...+++++|||++. ..+...+.+.+.....+. ...
T Consensus 172 ~~~~~~~iViDEah~--~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T 2i4i_A 172 GLDFCKYLVLDEADR--MLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN 249 (417)
T ss_dssp CCTTCCEEEESSHHH--HHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSS
T ss_pred ChhhCcEEEEEChhH--hhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccC
Confidence 88999999999995 3333345555565542 1 15789999999964 334443333443322221 223
Q ss_pred CcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhh
Q 008221 250 VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQK 329 (573)
Q Consensus 250 v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 329 (573)
+.+.|......++...+...+ ......+++|||++++.+++.+++.|... ++.+..+||++++++|.+
T Consensus 250 i~~~~~~~~~~~~~~~l~~~l---~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~ 317 (417)
T 2i4i_A 250 ITQKVVWVEESDKRSFLLDLL---NATGKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDREE 317 (417)
T ss_dssp EEEEEEECCGGGHHHHHHHHH---HTCCTTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred ceEEEEEeccHhHHHHHHHHH---HhcCCCCeEEEEECCHHHHHHHHHHHHHC---------CCCeeEecCCCCHHHHHH
Confidence 455555555555544333322 12235678999999999999999999874 678999999999999999
Q ss_pred hcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-C
Q 008221 330 IFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-Q 408 (573)
Q Consensus 330 ~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~ 408 (573)
+++.|+.|. .+|||||+++++|+|+|++++||++|+ |.|.++|+||+|||||. +
T Consensus 318 ~~~~f~~g~-------~~vlvaT~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~ 372 (417)
T 2i4i_A 318 ALHQFRSGK-------SPILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRVGN 372 (417)
T ss_dssp HHHHHHHTS-------SCEEEECHHHHTTSCCCCEEEEEESSC------------------CSSHHHHHHHHTTBCC--C
T ss_pred HHHHHHcCC-------CCEEEECChhhcCCCcccCCEEEEEcC------------------CCCHHHHHHhcCccccCCC
Confidence 999999888 899999999999999999999999999 99999999999999999 7
Q ss_pred CCeEEeccchhhh
Q 008221 409 PGKCFRLYTEKSF 421 (573)
Q Consensus 409 ~G~~~~l~t~~~~ 421 (573)
+|.||.||++.+.
T Consensus 373 ~g~~~~~~~~~~~ 385 (417)
T 2i4i_A 373 LGLATSFFNERNI 385 (417)
T ss_dssp CEEEEEEECGGGG
T ss_pred CceEEEEEccccH
Confidence 8999999998876
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6.7e-39 Score=338.32 Aligned_cols=338 Identities=16% Similarity=0.176 Sum_probs=244.3
Q ss_pred cCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEe
Q 008221 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (573)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t 122 (573)
..+|+++++++.+.+.+..+++..++++|.++++.+.+|+++++.+|||||||+++..+++.... ......+.++++|+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~-~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVK-PKLNKIQALIMVPT 98 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCC-TTSCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHh-hccCCccEEEEcCC
Confidence 45799999999999999999999999999999999999999999999999999988776664332 11111223444444
Q ss_pred cCcccccccHHHHHHHhhhhcccchhceeeeecc--cccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCccc
Q 008221 123 QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (573)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~ 199 (573)
..+..+.....+.+....+..+....|....... .......+.++|++++...+..... +.+++++|+||+|. +.
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~--~~ 176 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADK--ML 176 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHH--HS
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchH--hh
Confidence 4433333333333322223332222221110000 0112456888999999887766544 88899999999995 33
Q ss_pred HHHHHHHHHHHHHhC-CCcEEEEecccccHH---HHHchhCCCCeeeecCc--ccCCcccccCCCchhHHHHHHHHHHHH
Q 008221 200 TDVLFGLLKEVLKNR-PDLKLVVMSATLEAE---KFQGYFYGAPLMKVPGR--LHPVEIFYTQEPERDYLEAAIRTVVQI 273 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~-~~~~iil~SATl~~~---~~~~~~~~~~~i~v~g~--~~~v~~~y~~~~~~~~~~~~~~~l~~i 273 (573)
...+...+..+.... ++.+++++|||++.. .+..++..+..+.+... ...+..+|......++..... .+
T Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~----~~ 252 (400)
T 1s2m_A 177 SRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLN----TL 252 (400)
T ss_dssp SHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHH----HH
T ss_pred hhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHH----HH
Confidence 444556666665543 378999999999643 23344444333332221 223455555555555544322 23
Q ss_pred hhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeec
Q 008221 274 HMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 353 (573)
Q Consensus 274 ~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~ 353 (573)
......+++|||+++..+++.+++.|... ++.+..+||++++.+|..+++.|+.|. .+|||||+
T Consensus 253 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~-------~~vLv~T~ 316 (400)
T 1s2m_A 253 FSKLQINQAIIFCNSTNRVELLAKKITDL---------GYSCYYSHARMKQQERNKVFHEFRQGK-------VRTLVCSD 316 (400)
T ss_dssp HHHSCCSEEEEECSSHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHTTS-------SSEEEESS
T ss_pred HhhcCCCcEEEEEecHHHHHHHHHHHHhc---------CCCeEEecCCCCHHHHHHHHHHHhcCC-------CcEEEEcC
Confidence 33346679999999999999999999875 678999999999999999999999888 89999999
Q ss_pred ccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 354 IAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 354 iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
++++|+|+|++++||++++ |.|..+|+||+||+||. ++|.||.||++++.
T Consensus 317 ~~~~Gidip~~~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~ 367 (400)
T 1s2m_A 317 LLTRGIDIQAVNVVINFDF------------------PKTAETYLHRIGRSGRFGHLGLAINLINWNDR 367 (400)
T ss_dssp CSSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHCBSSCTTCCEEEEEEECGGGH
T ss_pred ccccCCCccCCCEEEEeCC------------------CCCHHHHHHhcchhcCCCCCceEEEEeccchH
Confidence 9999999999999999998 99999999999999999 89999999999876
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4.3e-39 Score=340.65 Aligned_cols=345 Identities=17% Similarity=0.208 Sum_probs=239.3
Q ss_pred cccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcC--CEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceE
Q 008221 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN--QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMM 118 (573)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g--~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~ 118 (573)
....+|+++++++.+++.+...++..++++|.++++.+..+ +++++.+|||||||+++..+++.... ......+.++
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~-~~~~~~~~li 100 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE-PANKYPQCLC 100 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCC-TTSCSCCEEE
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhh-hcCCCCCEEE
Confidence 34568999999999999999999999999999999999987 99999999999999998777665433 1111122334
Q ss_pred EEEecCcccccccHHHHHHHhhhhcccchhceeee---ecccccccccccccCHHHHHHHHhcccc--cCCCcEEEEeCC
Q 008221 119 IACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIR---FEDCSSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEA 193 (573)
Q Consensus 119 i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~---~~~~~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lILDEa 193 (573)
+ .|++..+.++++.+........+..+++... ..........+.++|+|++.+.+..... +.+++++|+||+
T Consensus 101 l---~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEa 177 (412)
T 3fht_A 101 L---SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 177 (412)
T ss_dssp E---CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETH
T ss_pred E---CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCH
Confidence 4 4444444444444433221111111221111 1111122457889999999998866333 689999999999
Q ss_pred CcCcccHHHHHHHHHHHHHh-CCCcEEEEecccccHH--HHH-chhCCCCeeeecCc---ccCCcccccCCCchhHHHHH
Q 008221 194 HERTLATDVLFGLLKEVLKN-RPDLKLVVMSATLEAE--KFQ-GYFYGAPLMKVPGR---LHPVEIFYTQEPERDYLEAA 266 (573)
Q Consensus 194 ~~r~~~~d~ll~~l~~l~~~-~~~~~iil~SATl~~~--~~~-~~~~~~~~i~v~g~---~~~v~~~y~~~~~~~~~~~~ 266 (573)
|.- .....+...+..+... .++.+++++|||++.. .+. .++.+...+.+... ...+.++|......+. .
T Consensus 178 h~~-~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 253 (412)
T 3fht_A 178 DVM-IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE---K 253 (412)
T ss_dssp HHH-HSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHH---H
T ss_pred HHH-hhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHH---H
Confidence 952 2212222333333332 3478999999999753 344 44444444433322 2234445544433222 2
Q ss_pred HHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCc
Q 008221 267 IRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGR 346 (573)
Q Consensus 267 ~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~ 346 (573)
...+..+......+++|||++++.+++.+++.|... ++.+..+||++++.+|.++++.|+.|. .
T Consensus 254 ~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~-------~ 317 (412)
T 3fht_A 254 FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIERFREGK-------E 317 (412)
T ss_dssp HHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHTTS-------C
T ss_pred HHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC---------CCeEEEecCCCCHHHHHHHHHHHHCCC-------C
Confidence 223333333345678999999999999999999875 678999999999999999999999988 8
Q ss_pred eEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 347 KIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 347 kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
+|||||+++++|+|+|++++||++|+.....+ +.|.++|+||+|||||. ++|.||.+++..+.
T Consensus 318 ~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~------------~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 381 (412)
T 3fht_A 318 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 381 (412)
T ss_dssp SEEEECGGGTSSCCCTTEEEEEESSCCBCSSS------------SBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred cEEEEcCccccCCCccCCCEEEEECCCCCCCC------------CcchheeecccCcccCCCCCceEEEEEcChhh
Confidence 99999999999999999999999998111100 16789999999999998 78999999986653
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.5e-38 Score=334.06 Aligned_cols=341 Identities=18% Similarity=0.214 Sum_probs=239.7
Q ss_pred cCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcC--CEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEE
Q 008221 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN--QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (573)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g--~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~ 120 (573)
..+|+++++++++++.+...++..++++|.++++.+..+ +++++.+|||||||+++..+++...... ....+.++++
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-~~~~~~lil~ 82 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-DASPQAICLA 82 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-CCSCCEEEEC
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-CCCccEEEEC
Confidence 468999999999999999999999999999999999998 8999999999999998887766543211 1112233344
Q ss_pred EecCcccccccHHHHHHHh---hhhcccchhceeeeecccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcC
Q 008221 121 CTQPRRVAAMSVSRRVAEE---MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHER 196 (573)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~---~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r 196 (573)
|++..+.++++.+... .+.......+. ...........+.++|++++...+....+ +.+++++|+||+|..
T Consensus 83 ---P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~ 157 (395)
T 3pey_A 83 ---PSRELARQTLEVVQEMGKFTKITSQLIVPD--SFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNM 157 (395)
T ss_dssp ---SSHHHHHHHHHHHHHHTTTSCCCEEEESTT--SSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHH
T ss_pred ---CCHHHHHHHHHHHHHHhcccCeeEEEEecC--chhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhh
Confidence 4443344444444332 12111111111 11111223467889999999988876654 889999999999952
Q ss_pred cccHHHHHHHHHHHHHhC-CCcEEEEecccccH--HHHH-chhCCCCeeeecCcc---cCCcccccCCCchhHHHHHHHH
Q 008221 197 TLATDVLFGLLKEVLKNR-PDLKLVVMSATLEA--EKFQ-GYFYGAPLMKVPGRL---HPVEIFYTQEPERDYLEAAIRT 269 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~~-~~~~iil~SATl~~--~~~~-~~~~~~~~i~v~g~~---~~v~~~y~~~~~~~~~~~~~~~ 269 (573)
. ....+...+..+.... ++.+++++|||+.. ..+. .++.+...+.+.... ..+...|........ ....
T Consensus 158 ~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 233 (395)
T 3pey_A 158 L-DQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEAD---KFDV 233 (395)
T ss_dssp H-HSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHH---HHHH
T ss_pred c-CccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHH---HHHH
Confidence 2 2122334444444433 47899999999964 3344 344443333333222 223344443322221 2334
Q ss_pred HHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEE
Q 008221 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (573)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (573)
+..+......+++|||++++..++.+++.|... ++.+..+||++++.+|.++++.|+.|. .+||
T Consensus 234 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~-------~~vl 297 (395)
T 3pey_A 234 LTELYGLMTIGSSIIFVATKKTANVLYGKLKSE---------GHEVSILHGDLQTQERDRLIDDFREGR-------SKVL 297 (395)
T ss_dssp HHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHTTS-------CCEE
T ss_pred HHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc---------CCcEEEeCCCCCHHHHHHHHHHHHCCC-------CCEE
Confidence 444555556789999999999999999999875 678999999999999999999999988 8999
Q ss_pred EeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 350 laT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|||+++++|+|+|++++||++|+.+. ...+.|.++|+||+|||||. ++|.|+.+++..+.
T Consensus 298 v~T~~~~~Gidip~~~~Vi~~~~p~~------------~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 358 (395)
T 3pey_A 298 ITTNVLARGIDIPTVSMVVNYDLPTL------------ANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358 (395)
T ss_dssp EECGGGSSSCCCTTEEEEEESSCCBC------------TTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred EECChhhcCCCcccCCEEEEcCCCCC------------CcCCCCHHHhhHhccccccCCCCceEEEEEechHH
Confidence 99999999999999999999998110 00134999999999999999 78999999986543
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=353.11 Aligned_cols=346 Identities=17% Similarity=0.192 Sum_probs=130.2
Q ss_pred ccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcC--CEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEE
Q 008221 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN--QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMI 119 (573)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g--~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i 119 (573)
...+|.++++++.+++.+..+++..++++|.++++.+..| +++++.||||||||+++..+++..... .....+.+++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~-~~~~~~~lil 168 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-ANKYPQCLCL 168 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT-TSCSCCEEEE
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh-cCCCCcEEEE
Confidence 3568999999999999999999999999999999999987 999999999999999998888765532 1112234445
Q ss_pred EEecCcccccccHHHHHHHhh-hhcccchhceeeeecccccccccccccCHHHHHHHHhcccc--cCCCcEEEEeCCCcC
Q 008221 120 ACTQPRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHER 196 (573)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lILDEa~~r 196 (573)
+|+..+..+....++.+.... +..+...++.. ...........|.++|+|++.+++..... +.++++||+||+|.
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~- 246 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGN-KLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV- 246 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTC-CCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH-
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCc-cccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH-
Confidence 555444444333333333221 11111111111 11111222457889999999998866443 68999999999995
Q ss_pred cccHHHHHHHHHHHHHh-CCCcEEEEecccccHH--HHHc-hhCCCCeeeecCc---ccCCcccccCCCchhHHHHHHHH
Q 008221 197 TLATDVLFGLLKEVLKN-RPDLKLVVMSATLEAE--KFQG-YFYGAPLMKVPGR---LHPVEIFYTQEPERDYLEAAIRT 269 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~-~~~~~iil~SATl~~~--~~~~-~~~~~~~i~v~g~---~~~v~~~y~~~~~~~~~~~~~~~ 269 (573)
......+...+..+... .++.+++++|||++.+ .+.. ++.++..+.+... ...+.++|........ ....
T Consensus 247 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 323 (479)
T 3fmp_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE---KFQA 323 (479)
T ss_dssp HHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------
T ss_pred HhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHH---HHHH
Confidence 22222333344444443 3478999999999753 4444 4444444444332 2334555544433221 2223
Q ss_pred HHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEE
Q 008221 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (573)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (573)
+..+......+++||||+++..++.+++.|... ++.+..+||++++.+|..+++.|+.|. .+||
T Consensus 324 l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~---------~~~v~~lh~~~~~~~R~~~~~~f~~g~-------~~iL 387 (479)
T 3fmp_B 324 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIERFREGK-------EKVL 387 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC---------CccEEEecCCCCHHHHHHHHHHHHcCC-------CcEE
Confidence 334444445678999999999999999999764 678999999999999999999999998 8999
Q ss_pred EeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 350 laT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|||+++++|||+|+|++||++|+.....+ +.|..+|+||+|||||. ++|.|+.||+..+.
T Consensus 388 v~T~~~~~GlDip~v~~VI~~d~p~~~~~------------~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~ 448 (479)
T 3fmp_B 388 VTTNVCARGIDVEQVSVVINFDLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 448 (479)
T ss_dssp -------------------------------------------------------------------------
T ss_pred EEccccccCCccccCCEEEEecCCCCCcc------------CCCHHHHHHHhcccccCCCCceEEEEEcCcch
Confidence 99999999999999999999998111100 15778999999999999 78999999997653
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6e-38 Score=326.26 Aligned_cols=332 Identities=18% Similarity=0.260 Sum_probs=244.1
Q ss_pred cCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcC-CEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEE
Q 008221 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN-QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIAC 121 (573)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g-~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~ 121 (573)
..+|+++++++.+.+.++.+++..++++|.++++.+.++ +.+++.+|||||||+++..+++...... ...+.+++
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~--~~~~~lil-- 80 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN--NGIEAIIL-- 80 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS--SSCCEEEE--
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc--CCCcEEEE--
Confidence 346999999999999999999999999999999999888 6999999999999999887666433211 11122333
Q ss_pred ecCcccccccHHHHHHHhhh---hcccchhceeeeecc-cccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcC
Q 008221 122 TQPRRVAAMSVSRRVAEEMD---VTIGEEVGYSIRFED-CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHER 196 (573)
Q Consensus 122 t~p~~~~~~~v~~~v~~~~~---~~~~~~vg~~~~~~~-~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r 196 (573)
.|++..+.++++.+....+ ..+....|....... ....+..+.++|++.+.+.+....+ +.+++++|+||+|.
T Consensus 81 -~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~- 158 (367)
T 1hv8_A 81 -TPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE- 158 (367)
T ss_dssp -CSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH-
T ss_pred -cCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH-
Confidence 3544444445555544322 222222221100000 0112457888999999988776655 78999999999996
Q ss_pred cccHHHHHHHHHHHHHh-CCCcEEEEecccccHH---HHHchhCCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHH
Q 008221 197 TLATDVLFGLLKEVLKN-RPDLKLVVMSATLEAE---KFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQ 272 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~-~~~~~iil~SATl~~~---~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~ 272 (573)
+....+...+..+... .++.+++++|||++.+ ....++.+...+.. .....+...|......++...+...+
T Consensus 159 -~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l-- 234 (367)
T 1hv8_A 159 -MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA-KINANIEQSYVEVNENERFEALCRLL-- 234 (367)
T ss_dssp -HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEEC-CSSSSSEEEEEECCGGGHHHHHHHHH--
T ss_pred -hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEe-cCCCCceEEEEEeChHHHHHHHHHHH--
Confidence 2222233444444433 3478999999999754 23455555444332 23345666666666666655443332
Q ss_pred HhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEee
Q 008221 273 IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST 352 (573)
Q Consensus 273 i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT 352 (573)
. ...+++|||+++..+++.+++.|... ++.+..+||+++..+|.++++.|++|. .+|||||
T Consensus 235 --~-~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~-------~~vlv~T 295 (367)
T 1hv8_A 235 --K-NKEFYGLVFCKTKRDTKELASMLRDI---------GFKAGAIHGDLSQSQREKVIRLFKQKK-------IRILIAT 295 (367)
T ss_dssp --C-STTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECSSSCHHHHHHHHHHHHTTS-------SSEEEEC
T ss_pred --h-cCCCcEEEEECCHHHHHHHHHHHHhc---------CCCeEEeeCCCCHHHHHHHHHHHHcCC-------CeEEEEC
Confidence 2 46678999999999999999999874 678999999999999999999999888 8999999
Q ss_pred cccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 353 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 353 ~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
+++++|+|+|++++||+++. |.|..+|.||+||+||. ++|.|+.+++++++
T Consensus 296 ~~~~~Gid~~~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 347 (367)
T 1hv8_A 296 DVMSRGIDVNDLNCVINYHL------------------PQNPESYMHRIGRTGRAGKKGKAISIINRREY 347 (367)
T ss_dssp TTHHHHCCCSCCSEEEESSC------------------CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSH
T ss_pred ChhhcCCCcccCCEEEEecC------------------CCCHHHhhhcccccccCCCccEEEEEEcHHHH
Confidence 99999999999999999998 99999999999999999 79999999998876
No 14
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.5e-37 Score=324.94 Aligned_cols=335 Identities=14% Similarity=0.172 Sum_probs=240.8
Q ss_pred CccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEec
Q 008221 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (573)
.+|+++++++.+.+.+...++..++++|.++++.+.+|+++++.+|||||||+++..+++.... ......+.++++|+.
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~-~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE-PVTGQVSVLVMCHTR 86 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCC-CCTTCCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhc-ccCCCeeEEEECCCH
Confidence 5699999999999999999999999999999999999999999999999999988766654322 111112234444443
Q ss_pred CcccccccHHHHHHHhh----hhcccchhceeeeec---ccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCc
Q 008221 124 PRRVAAMSVSRRVAEEM----DVTIGEEVGYSIRFE---DCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHE 195 (573)
Q Consensus 124 p~~~~~~~v~~~v~~~~----~~~~~~~vg~~~~~~---~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~ 195 (573)
.+ +.++.+.+.... +..+....|...... ........+.++|++++...+....+ +.+++++|+||+|.
T Consensus 87 ~L---~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~ 163 (391)
T 1xti_A 87 EL---AFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK 163 (391)
T ss_dssp HH---HHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHH
T ss_pred HH---HHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHH
Confidence 33 333444443322 222222222110000 00011246888999999988776654 88999999999995
Q ss_pred CcccHHHHHHHHHHHHHhC-CCcEEEEecccccH--HH-HHchhCCCCeeeecCc----ccCCcccccCCCchhHHHHHH
Q 008221 196 RTLATDVLFGLLKEVLKNR-PDLKLVVMSATLEA--EK-FQGYFYGAPLMKVPGR----LHPVEIFYTQEPERDYLEAAI 267 (573)
Q Consensus 196 r~~~~d~ll~~l~~l~~~~-~~~~iil~SATl~~--~~-~~~~~~~~~~i~v~g~----~~~v~~~y~~~~~~~~~~~~~ 267 (573)
- .....+...+..+.... ++.+++++|||+.. .. +..++.++..+.+... ...+..+|......++...+.
T Consensus 164 ~-~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 164 M-LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp H-TSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred H-hhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 2 22123444455555443 37899999999953 23 3445554434433322 133455565555555544333
Q ss_pred HHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCce
Q 008221 268 RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRK 347 (573)
Q Consensus 268 ~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~k 347 (573)
.. ......+++|||+++..+++.+++.|... ++.+..+||++++.+|..+++.|++|. .+
T Consensus 243 ~~----l~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~-------~~ 302 (391)
T 1xti_A 243 DL----LDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERLSRYQQFKDFQ-------RR 302 (391)
T ss_dssp HH----HHHSCCSEEEEECSCHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTC-------CS
T ss_pred HH----HHhcCCCcEEEEeCcHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHhcCC-------Cc
Confidence 32 23346689999999999999999999874 678999999999999999999999988 89
Q ss_pred EEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 348 IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 348 vllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|||||+++++|+|+|++++||+++. |.|..+|+||+||+||. ++|.|+.++++.+.
T Consensus 303 vlv~T~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 303 ILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp EEEESCCCSSCBCCTTEEEEEESSC------------------CSSHHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred EEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHhcccccCCCCceEEEEEEcccch
Confidence 9999999999999999999999999 99999999999999999 89999999997654
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.4e-38 Score=334.77 Aligned_cols=341 Identities=17% Similarity=0.276 Sum_probs=127.5
Q ss_pred cccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEE
Q 008221 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (573)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~ 120 (573)
....+|+++++++.+.+.+...++..++++|.++++.+.+|+++++.+|||||||+++..+++.... ......+.++++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~-~~~~~~~~lil~ 96 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID-TSVKAPQALMLA 96 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCC-TTCCSCCEEEEC
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhh-ccCCCCCEEEEc
Confidence 3456799999999999999999999999999999999999999999999999999987766654332 111112334444
Q ss_pred EecCcccccccHHHHHHHhhhhcccchhceeeeeccc-ccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcc
Q 008221 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTL 198 (573)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~ 198 (573)
|++.+..+.......+....+..+....|........ ......+.++|++.+.+.+....+ +.+++++|+||+|. +
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~--~ 174 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE--M 174 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH--H
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH--h
Confidence 4444333333323222222233333333322110100 011456889999999988776555 78899999999996 3
Q ss_pred cHHHHHHHHHHHHHh-CCCcEEEEecccccHH---HHHchhCCCCeeeecCcc---cCCcccccCCCchhHHHHHHHHHH
Q 008221 199 ATDVLFGLLKEVLKN-RPDLKLVVMSATLEAE---KFQGYFYGAPLMKVPGRL---HPVEIFYTQEPERDYLEAAIRTVV 271 (573)
Q Consensus 199 ~~d~ll~~l~~l~~~-~~~~~iil~SATl~~~---~~~~~~~~~~~i~v~g~~---~~v~~~y~~~~~~~~~~~~~~~l~ 271 (573)
....+...+..+... .++.+++++|||++.. ....++.++..+.+.... ..+..+|......++. ...+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ 251 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYK---YECLT 251 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhH---HHHHH
Confidence 222233333333333 3478999999999643 233455444333333221 2334444443333221 12233
Q ss_pred HHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEe
Q 008221 272 QIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS 351 (573)
Q Consensus 272 ~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlla 351 (573)
.+......+++|||++++.+++.+++.|... ++.+..+||++++.+|.++++.|+.|. .+||||
T Consensus 252 ~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~-------~~vlv~ 315 (394)
T 1fuu_A 252 DLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGS-------SRILIS 315 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCCcEEEEECCHHHHHHHHHHHHHc---------CCeEEEeeCCCCHHHHHHHHHHHHCCC-------CcEEEE
Confidence 3333345678999999999999999999764 678999999999999999999999988 899999
Q ss_pred ecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 352 TNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 352 T~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|+++++|+|+|++++||++|. |.|..+|+||+||+||. ++|.||.++++++.
T Consensus 316 T~~~~~Gldi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 368 (394)
T 1fuu_A 316 TDLLARGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDV 368 (394)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHcCcccCCCCCceEEEEEchhHH
Confidence 999999999999999999998 99999999999999999 89999999998876
No 16
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.3e-37 Score=339.72 Aligned_cols=304 Identities=21% Similarity=0.254 Sum_probs=221.3
Q ss_pred HHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHH
Q 008221 57 EILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 57 ~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
+.+..+..+|++.+|+++++.+.++++++++|+||||||++++.++++.. ..+++..|++..+.++++++
T Consensus 208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g----------~~vLVl~PTReLA~Qia~~l 277 (666)
T 3o8b_A 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQG----------YKVLVLNPSVAATLGFGAYM 277 (666)
T ss_dssp HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTT----------CCEEEEESCHHHHHHHHHHH
T ss_pred HhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCC----------CeEEEEcchHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999888632 12455567777778888888
Q ss_pred HHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCC
Q 008221 137 AEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP 215 (573)
Q Consensus 137 ~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~ 215 (573)
++.++..++..+|+.. ......|.++|+|+++. ...+ +.++++||+||+|+.....+..+..+.+......
T Consensus 278 ~~~~g~~vg~~vG~~~-----~~~~~~IlV~TPGrLl~---~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~ 349 (666)
T 3o8b_A 278 SKAHGIDPNIRTGVRT-----ITTGAPVTYSTYGKFLA---DGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAG 349 (666)
T ss_dssp HHHHSCCCEEECSSCE-----ECCCCSEEEEEHHHHHH---TTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTT
T ss_pred HHHhCCCeeEEECcEe-----ccCCCCEEEECcHHHHh---CCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcC
Confidence 8888777666666543 23356788999999732 2223 7789999999999866555444444444443333
Q ss_pred CcEEEEecccccHHHHHchhCCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHH
Q 008221 216 DLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDA 295 (573)
Q Consensus 216 ~~~iil~SATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~ 295 (573)
...+++||||++... . .....+..+.-.......++ .. ... ......+++|||++++++++.+
T Consensus 350 ~~llil~SAT~~~~i-~--~~~p~i~~v~~~~~~~i~~~-~~-~~~------------l~~~~~~~vLVFv~Tr~~ae~l 412 (666)
T 3o8b_A 350 ARLVVLATATPPGSV-T--VPHPNIEEVALSNTGEIPFY-GK-AIP------------IEAIRGGRHLIFCHSKKKCDEL 412 (666)
T ss_dssp CSEEEEEESSCTTCC-C--CCCTTEEEEECBSCSSEEET-TE-EEC------------GGGSSSSEEEEECSCHHHHHHH
T ss_pred CceEEEECCCCCccc-c--cCCcceEEEeecccchhHHH-Hh-hhh------------hhhccCCcEEEEeCCHHHHHHH
Confidence 445788899996420 0 00111111110000000000 00 000 1123578999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccc
Q 008221 296 CRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQ 375 (573)
Q Consensus 296 ~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~ 375 (573)
++.|.+. ++.+..+||+|++++ ++.+. ++||||||+||+||||| |++|||+|+.+.
T Consensus 413 a~~L~~~---------g~~v~~lHG~l~q~e-------r~~~~-------~~VLVATdVaerGIDId-V~~VI~~Gl~~~ 468 (666)
T 3o8b_A 413 AAKLSGL---------GINAVAYYRGLDVSV-------IPTIG-------DVVVVATDALMTGYTGD-FDSVIDCNTCVT 468 (666)
T ss_dssp HHHHHTT---------TCCEEEECTTSCGGG-------SCSSS-------CEEEEECTTHHHHCCCC-BSEEEECCEEEE
T ss_pred HHHHHhC---------CCcEEEecCCCCHHH-------HHhCC-------CcEEEECChHHccCCCC-CcEEEecCcccc
Confidence 9999864 788999999999875 23343 69999999999999997 999999999887
Q ss_pred ee----ecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhh
Q 008221 376 KV----YNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF 421 (573)
Q Consensus 376 ~~----~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~ 421 (573)
.+ |||..++..+ ..|.|.++|+||+|||||.++|. |+||++++.
T Consensus 469 ~ViNyDydP~~gl~~~-~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 469 QTVDFSLDPTFTIETT-TVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp EEEECCCSSSCEEEEE-EEECBHHHHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred cccccccccccccccc-cCcCCHHHHHHHhccCCCCCCCE-EEEEecchh
Confidence 76 5676776554 56999999999999999998999 999998876
No 17
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=7.1e-36 Score=329.65 Aligned_cols=341 Identities=13% Similarity=0.145 Sum_probs=230.1
Q ss_pred CCChHHHHHHHHhcCCCChHHHHHHHHHHh--cCCEEEEEcCCCCchhhhhhhhhhcCccCC---ChhhcCceEEEEecC
Q 008221 50 PYSQRYYEILEKRKSLPVWQQKEEFLQVLK--ANQVIILVGETGSGKTTQIPQFVLEGVDIE---TPDRRRKMMIACTQP 124 (573)
Q Consensus 50 ~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~--~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~---~~~~~~~~~i~~t~p 124 (573)
.+++++++.+...++..++++|.++++.+. .|+++++.+|||||||.++..+++...... .....+.++++|+.+
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 399999999999999999999999999998 678999999999999998776655432111 111123344455444
Q ss_pred cccccccHHHHHHHh-hhhc---ccchhceeeeec---ccccccccccccCHHHHHHHHhcc--cccCCCcEEEEeCCCc
Q 008221 125 RRVAAMSVSRRVAEE-MDVT---IGEEVGYSIRFE---DCSSARTVLKYLTDGMLLREAMTD--PLLERYKVIVLDEAHE 195 (573)
Q Consensus 125 ~~~~~~~v~~~v~~~-~~~~---~~~~vg~~~~~~---~~~~~~~~i~~lT~G~l~r~~~~~--~ll~~~~~lILDEa~~ 195 (573)
+..+.....+.+... .+.. +...+|...... ........|.++|+|++..++... ..+.++++||+||||.
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 444433333333221 1111 111122110000 001124578899999998877653 3488999999999995
Q ss_pred Cc--ccHHHHHHHHHHHHHh----CCCcEEEEecccccH--HHHHchhCCCC-eeeecCc-------ccCCcccccCCC-
Q 008221 196 RT--LATDVLFGLLKEVLKN----RPDLKLVVMSATLEA--EKFQGYFYGAP-LMKVPGR-------LHPVEIFYTQEP- 258 (573)
Q Consensus 196 r~--~~~d~ll~~l~~l~~~----~~~~~iil~SATl~~--~~~~~~~~~~~-~i~v~g~-------~~~v~~~y~~~~- 258 (573)
-. -....+..++..+... .++.+++++|||++. ..+...+...+ .+.+... ...+...+....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 11 1123333333333322 237899999999964 44554443333 3322111 111222222211
Q ss_pred chhHHHHHHHHHHH-HhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCC
Q 008221 259 ERDYLEAAIRTVVQ-IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPP 337 (573)
Q Consensus 259 ~~~~~~~~~~~l~~-i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g 337 (573)
..+.....+..+.. +......+++|||++++..++.+++.|..... .++.+..+||+|++.+|..+++.|+.|
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~------~~~~v~~~h~~~~~~~R~~~~~~f~~g 391 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKD 391 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHC
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc------CCceEEEecCCCCHHHHHHHHHHHhcC
Confidence 12233333333333 22335677899999999999999999987532 267899999999999999999999998
Q ss_pred CCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEecc
Q 008221 338 SKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLY 416 (573)
Q Consensus 338 ~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~ 416 (573)
. .+|||||+++++|||+|+|++||++|+ |.|.++|+||+|||||. ++|.|+.++
T Consensus 392 ~-------~~vLvaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~ 446 (563)
T 3i5x_A 392 E-------SGILVCTDVGARGMDFPNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFI 446 (563)
T ss_dssp S-------SEEEEECGGGTSSCCCTTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEE
T ss_pred C-------CCEEEEcchhhcCCCcccCCEEEEECC------------------CCchhhhhhhcCccccCCCCceEEEEE
Confidence 8 899999999999999999999999998 99999999999999999 799999999
Q ss_pred chhhh
Q 008221 417 TEKSF 421 (573)
Q Consensus 417 t~~~~ 421 (573)
++.+.
T Consensus 447 ~~~e~ 451 (563)
T 3i5x_A 447 CKDEL 451 (563)
T ss_dssp EGGGH
T ss_pred chhHH
Confidence 98765
No 18
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2e-35 Score=327.02 Aligned_cols=341 Identities=13% Similarity=0.142 Sum_probs=230.7
Q ss_pred CCChHHHHHHHHhcCCCChHHHHHHHHHHh--cCCEEEEEcCCCCchhhhhhhhhhcCccCC---ChhhcCceEEEEecC
Q 008221 50 PYSQRYYEILEKRKSLPVWQQKEEFLQVLK--ANQVIILVGETGSGKTTQIPQFVLEGVDIE---TPDRRRKMMIACTQP 124 (573)
Q Consensus 50 ~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~--~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~---~~~~~~~~~i~~t~p 124 (573)
.+++++++.+...++..++++|.++++.+. .|+++++.+|||||||.++..+++...... .....+.++++|+..
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 399999999999999999999999999998 788999999999999998776665432111 111123344455444
Q ss_pred cccccccHHHHHHHhh-hh---cccchhceeeeec---ccccccccccccCHHHHHHHHhcc--cccCCCcEEEEeCCCc
Q 008221 125 RRVAAMSVSRRVAEEM-DV---TIGEEVGYSIRFE---DCSSARTVLKYLTDGMLLREAMTD--PLLERYKVIVLDEAHE 195 (573)
Q Consensus 125 ~~~~~~~v~~~v~~~~-~~---~~~~~vg~~~~~~---~~~~~~~~i~~lT~G~l~r~~~~~--~ll~~~~~lILDEa~~ 195 (573)
+..+.....+.+.... +. .+...+|...... ........|.++|+|++..++... ..+.++++||+||||.
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 4444333333332210 11 1111122110000 001124578899999999877653 3588999999999995
Q ss_pred Cc--ccHHHHHHHHHHHHHhC----CCcEEEEecccccH--HHHHchh-CCCCeeeecCc-------ccCCcccccCCCc
Q 008221 196 RT--LATDVLFGLLKEVLKNR----PDLKLVVMSATLEA--EKFQGYF-YGAPLMKVPGR-------LHPVEIFYTQEPE 259 (573)
Q Consensus 196 r~--~~~d~ll~~l~~l~~~~----~~~~iil~SATl~~--~~~~~~~-~~~~~i~v~g~-------~~~v~~~y~~~~~ 259 (573)
-. -....+..++..+.... ++.+++++|||++. ..+...+ .....+.+... ...+...+.....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 11 12233333443333322 26799999999964 3444433 33333332211 1112222222211
Q ss_pred -hhHHHHHHHHHHHH-hhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCC
Q 008221 260 -RDYLEAAIRTVVQI-HMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPP 337 (573)
Q Consensus 260 -~~~~~~~~~~l~~i-~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g 337 (573)
.......+..+... ......+++|||++++..++.+++.|..... .++.+..+||+|++.+|.++++.|+.|
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~------~~~~v~~~hg~~~~~~R~~~~~~F~~g 340 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKD 340 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc------CCCcEEEecCCCCHHHHHHHHHHhhcC
Confidence 22222333333332 2335667899999999999999999987532 267899999999999999999999998
Q ss_pred CCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEecc
Q 008221 338 SKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLY 416 (573)
Q Consensus 338 ~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~ 416 (573)
. .+|||||+++++|||+|+|++||++|+ |.|.++|+||+|||||. ++|.|+.++
T Consensus 341 ~-------~~vLVaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~ 395 (579)
T 3sqw_A 341 E-------SGILVCTDVGARGMDFPNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFI 395 (579)
T ss_dssp S-------SEEEEECGGGTSSCCCTTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEE
T ss_pred C-------CeEEEEcchhhcCCCcccCCEEEEcCC------------------CCCHHHhhhhccccccCCCCceEEEEE
Confidence 8 899999999999999999999999998 99999999999999999 799999999
Q ss_pred chhhh
Q 008221 417 TEKSF 421 (573)
Q Consensus 417 t~~~~ 421 (573)
++.+.
T Consensus 396 ~~~e~ 400 (579)
T 3sqw_A 396 CKDEL 400 (579)
T ss_dssp EGGGH
T ss_pred cccHH
Confidence 98764
No 19
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.4e-35 Score=324.91 Aligned_cols=331 Identities=17% Similarity=0.166 Sum_probs=228.1
Q ss_pred cCCCCCChHHHHHHHH-hcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecC
Q 008221 46 WNGKPYSQRYYEILEK-RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQP 124 (573)
Q Consensus 46 f~~~~l~~~~~~~l~~-~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p 124 (573)
+.++++++.+.+.|+. .|+..++++|.++++.+.+|+++++++|||+|||+.+..+.+... ...++++ |
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~-------g~~lVis---P 92 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD-------GFTLVIC---P 92 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSS-------SEEEEEC---S
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcC-------CcEEEEe---C
Confidence 4467889999999998 499999999999999999999999999999999998776666421 1223333 4
Q ss_pred cccccccHHHHHHHhhhhcccchhceeeeecc------c--ccccccccccCHHHHHH------HHhcccccCCCcEEEE
Q 008221 125 RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED------C--SSARTVLKYLTDGMLLR------EAMTDPLLERYKVIVL 190 (573)
Q Consensus 125 ~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~------~--~~~~~~i~~lT~G~l~r------~~~~~~ll~~~~~lIL 190 (573)
++..+.+..+.+... +.......|.....+. . ......+.++|++++.. .+.....+.+++++|+
T Consensus 93 ~~~L~~q~~~~l~~~-gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iVi 171 (591)
T 2v1x_A 93 LISLMEDQLMVLKQL-GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAV 171 (591)
T ss_dssp CHHHHHHHHHHHHHH-TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEE
Confidence 443333444444332 3332222221110000 0 12346788999998742 2222223678999999
Q ss_pred eCCCcCcccH-HH--HHHHHHHHHHhCCCcEEEEecccccHH---HHHchhCCCCeeeecCcccCCcccccCCCchhHHH
Q 008221 191 DEAHERTLAT-DV--LFGLLKEVLKNRPDLKLVVMSATLEAE---KFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLE 264 (573)
Q Consensus 191 DEa~~r~~~~-d~--ll~~l~~l~~~~~~~~iil~SATl~~~---~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~ 264 (573)
||||.-.... ++ .+..+..+....++.+++++|||++.. .+..++.....+.+.........+|..........
T Consensus 172 DEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~ 251 (591)
T 2v1x_A 172 DEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTE 251 (591)
T ss_dssp ETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHH
T ss_pred ECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHH
Confidence 9999632111 01 111223344456689999999999753 34455553332322222222223332221111111
Q ss_pred HHHHHHHHHhh-cCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCC
Q 008221 265 AAIRTVVQIHM-CEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 343 (573)
Q Consensus 265 ~~~~~l~~i~~-~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~ 343 (573)
..+..+..+.. ....+++|||++++.+++.+++.|... ++.+..+||+|++++|.++++.|..|.
T Consensus 252 ~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~F~~g~----- 317 (591)
T 2v1x_A 252 DFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL---------GIHAGAYHANLEPEDKTTVHRKWSANE----- 317 (591)
T ss_dssp HHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTS-----
T ss_pred HHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHHcCC-----
Confidence 22333333333 235678999999999999999999875 788999999999999999999999988
Q ss_pred CCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 344 PGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 344 ~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
.+|||||+++++|||+|+|++||++++ |.|.++|.||+|||||. .+|.|+.||+..+.
T Consensus 318 --~~VlVAT~a~~~GID~p~V~~VI~~~~------------------p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~ 376 (591)
T 2v1x_A 318 --IQVVVATVAFGMGIDKPDVRFVIHHSM------------------SKSMENYYQESGRAGRDDMKADCILYYGFGDI 376 (591)
T ss_dssp --SSEEEECTTSCTTCCCSCEEEEEESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred --CeEEEEechhhcCCCcccccEEEEeCC------------------CCCHHHHHHHhccCCcCCCCceEEEEEChHHH
Confidence 899999999999999999999999999 99999999999999999 79999999998775
No 20
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.7e-36 Score=307.26 Aligned_cols=311 Identities=17% Similarity=0.223 Sum_probs=222.5
Q ss_pred CChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccc
Q 008221 51 YSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAM 130 (573)
Q Consensus 51 l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~ 130 (573)
+++++.+.++..++..++++|.++++.+.+|+.+++.+|||||||+++..+++... .+.++++ |++..+.
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~-------~~~liv~---P~~~L~~ 70 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELG-------MKSLVVT---PTRELTR 70 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHT-------CCEEEEC---SSHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhc-------CCEEEEe---CCHHHHH
Confidence 46889999999999999999999999999999999999999999998887776521 1234444 4443344
Q ss_pred cHHHHHHH---hhhhcccchhceeeeecc-cccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcccHHHHHH
Q 008221 131 SVSRRVAE---EMDVTIGEEVGYSIRFED-CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFG 205 (573)
Q Consensus 131 ~v~~~v~~---~~~~~~~~~vg~~~~~~~-~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~~d~ll~ 205 (573)
+.++.+.+ ..+..+....|....... ....+..+.++|++.+.+.+....+ +.+++++|+||+|. +....+..
T Consensus 71 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~--~~~~~~~~ 148 (337)
T 2z0m_A 71 QVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADL--MFEMGFID 148 (337)
T ss_dssp HHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHH--HHHTTCHH
T ss_pred HHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHH--hhccccHH
Confidence 44444433 222333222221110000 0012356889999999988766554 78899999999995 33333344
Q ss_pred HHHHHHHhC-CCcEEEEecccccHH---HHHchhCCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCC
Q 008221 206 LLKEVLKNR-PDLKLVVMSATLEAE---KFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGD 281 (573)
Q Consensus 206 ~l~~l~~~~-~~~~iil~SATl~~~---~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~ 281 (573)
.++.+.... +..+++++|||++.. .+..++.+...+.......++...|........ ... ........++
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~ 222 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWR--SKV----QALRENKDKG 222 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSH--HHH----HHHHTCCCSS
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHH--HHH----HHHHhCCCCc
Confidence 444444433 367889999999753 345566554444333223334444443332221 111 2233456788
Q ss_pred EEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccccccc
Q 008221 282 ILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTI 361 (573)
Q Consensus 282 iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI 361 (573)
+|||+++.++++.+++.|. .+..+||+++..+|.++++.|++|. .+|||||+++++|+|+
T Consensus 223 ~lvf~~~~~~~~~l~~~l~-------------~~~~~~~~~~~~~r~~~~~~f~~~~-------~~vlv~T~~~~~Gid~ 282 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFD-------------NAIELRGDLPQSVRNRNIDAFREGE-------YDMLITTDVASRGLDI 282 (337)
T ss_dssp EEEECSCHHHHHHHHTTCT-------------TEEEECTTSCHHHHHHHHHHHHTTS-------CSEEEECHHHHTTCCC
T ss_pred EEEEEcCHHHHHHHHHHhh-------------hhhhhcCCCCHHHHHHHHHHHHcCC-------CcEEEEcCccccCCCc
Confidence 9999999999998877663 2678999999999999999999988 8999999999999999
Q ss_pred CCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccc
Q 008221 362 DGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYT 417 (573)
Q Consensus 362 ~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t 417 (573)
|++++||+++. |.|.++|.||+||+||. ++|.|+.+++
T Consensus 283 ~~~~~Vi~~~~------------------~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 283 PLVEKVINFDA------------------PQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp CCBSEEEESSC------------------CSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred cCCCEEEEecC------------------CCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 99999999998 99999999999999999 8999999998
No 21
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.1e-35 Score=318.74 Aligned_cols=302 Identities=20% Similarity=0.251 Sum_probs=209.6
Q ss_pred CCCChHHHHHHHHHHhcCC-EEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 64 SLPVWQQKEEFLQVLKANQ-VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 64 ~lp~~~~q~~~i~~i~~g~-~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
+..++++|+ +++.+.+++ +++++||||||||+++..+++...... ..+.+++ .|++..+.++++.+.
T Consensus 2 ~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~---~~~~lvl---~Ptr~La~Q~~~~l~----- 69 (451)
T 2jlq_A 2 SAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR---RLRTLIL---APTRVVAAEMEEALR----- 69 (451)
T ss_dssp CCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT---TCCEEEE---ESSHHHHHHHHHHTT-----
T ss_pred CCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc---CCcEEEE---CCCHHHHHHHHHHhc-----
Confidence 445566665 566666554 558999999999998665554322101 1123333 355543333433331
Q ss_pred cccchhceeeeecc-cccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEE
Q 008221 143 TIGEEVGYSIRFED-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVV 221 (573)
Q Consensus 143 ~~~~~vg~~~~~~~-~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil 221 (573)
+..+++...... .....+.+.++|+|.+.+.+.....+.++++||+||+|......+..+..+.... ..++.++++
T Consensus 70 --g~~v~~~~~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~-~~~~~~~i~ 146 (451)
T 2jlq_A 70 --GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-EMGEAAAIF 146 (451)
T ss_dssp --TSCEEECCTTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHH-HTTSCEEEE
T ss_pred --CceeeeeeccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhh-cCCCceEEE
Confidence 222233222111 1223456778999999988888777999999999999976444455555554432 235899999
Q ss_pred ecccccHHHHHchhCCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHH
Q 008221 222 MSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITK 301 (573)
Q Consensus 222 ~SATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~ 301 (573)
||||++......+..+.+++.+. ...|... |... .+ .+ . +..+++|||++++.+++.+++.|.+
T Consensus 147 ~SAT~~~~~~~~~~~~~~~~~~~-~~~p~~~-~~~~--~~-------~l---~--~~~~~~lVF~~s~~~a~~l~~~L~~ 210 (451)
T 2jlq_A 147 MTATPPGSTDPFPQSNSPIEDIE-REIPERS-WNTG--FD-------WI---T--DYQGKTVWFVPSIKAGNDIANCLRK 210 (451)
T ss_dssp ECSSCTTCCCSSCCCSSCEEEEE-CCCCSSC-CSSS--CH-------HH---H--HCCSCEEEECSSHHHHHHHHHHHHT
T ss_pred EccCCCccchhhhcCCCceEecC-ccCCchh-hHHH--HH-------HH---H--hCCCCEEEEcCCHHHHHHHHHHHHH
Confidence 99999764444444556665543 3333222 2110 01 11 1 2357899999999999999999976
Q ss_pred HHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeeccc
Q 008221 302 EITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPR 381 (573)
Q Consensus 302 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~ 381 (573)
. ++.+..+||++. .++++.|++|. .+||||||++|+|||||+ ++|||+|+.+..+|| .
T Consensus 211 ~---------g~~~~~lh~~~~----~~~~~~f~~g~-------~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~ 268 (451)
T 2jlq_A 211 S---------GKRVIQLSRKTF----DTEYPKTKLTD-------WDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-T 268 (451)
T ss_dssp T---------TCCEEEECTTTH----HHHGGGGGSSC-------CSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-C
T ss_pred c---------CCeEEECCHHHH----HHHHHhhccCC-------ceEEEECCHHHhCcCCCC-CEEEECCCccccccc-c
Confidence 4 678899999754 56889999988 899999999999999999 999999999999998 5
Q ss_pred CCccccee---eeccHhhHHHhccccCCCC--CCeEEeccch
Q 008221 382 VRVESLLV---SPISKASAHQRSGRAGRTQ--PGKCFRLYTE 418 (573)
Q Consensus 382 ~~~~~l~~---~p~s~~~~~qR~GRaGR~~--~G~~~~l~t~ 418 (573)
.+.+.+.. .|.|.++|+||+|||||.+ +|.||.++..
T Consensus 269 ~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 269 DGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp SSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 56666765 8999999999999999994 8999988754
No 22
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.4e-35 Score=318.54 Aligned_cols=293 Identities=20% Similarity=0.222 Sum_probs=200.4
Q ss_pred HHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeee
Q 008221 75 LQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRF 154 (573)
Q Consensus 75 i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~ 154 (573)
...+.+|++++++||||||||+++..++++..... +..+++..|++..+.++++.+. + ..+++....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~------~~~~lvl~Ptr~La~Q~~~~l~---g----~~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ------RLRTAVLAPTRVVAAEMAEALR---G----LPVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT------TCCEEEEECSHHHHHHHHHHTT---T----SCEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC------CCcEEEECchHHHHHHHHHHhc---C----ceEeEEecc
Confidence 55678899999999999999999877766432201 1223344455554444544442 1 122222111
Q ss_pred cc-cccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccHHHHHc
Q 008221 155 ED-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQG 233 (573)
Q Consensus 155 ~~-~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~~~~~~ 233 (573)
.. .......+.+++.|.+.+.++....+.++++||+||+|++....+..+..+...... ++.++++||||++.....-
T Consensus 82 ~~~~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~-~~~~~il~SAT~~~~~~~~ 160 (459)
T 2z83_A 82 VQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVEL-GEAAAIFMTATPPGTTDPF 160 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHT-TSCEEEEECSSCTTCCCSS
T ss_pred cccCCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhcc-CCccEEEEEcCCCcchhhh
Confidence 11 112345567789999988888877799999999999998766566666666665543 4899999999997432111
Q ss_pred hhCCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCe
Q 008221 234 YFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPV 313 (573)
Q Consensus 234 ~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~ 313 (573)
...+.|+..+.. ..+...+. ... ..+ . ...+++|||++++.+++.+++.|... ++
T Consensus 161 ~~~~~pi~~~~~-~~~~~~~~------~~~----~~l---~--~~~~~~LVF~~s~~~~~~l~~~L~~~---------g~ 215 (459)
T 2z83_A 161 PDSNAPIHDLQD-EIPDRAWS------SGY----EWI---T--EYAGKTVWFVASVKMGNEIAMCLQRA---------GK 215 (459)
T ss_dssp CCCSSCEEEEEC-CCCSSCCS------SCC----HHH---H--HCCSCEEEECSCHHHHHHHHHHHHHT---------TC
T ss_pred ccCCCCeEEecc-cCCcchhH------HHH----HHH---H--hcCCCEEEEeCChHHHHHHHHHHHhc---------CC
Confidence 112445544332 11211111 000 111 1 13679999999999999999999875 77
Q ss_pred EEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccc---eee
Q 008221 314 KVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESL---LVS 390 (573)
Q Consensus 314 ~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l---~~~ 390 (573)
.+..+||+ +|.++++.|+.|. .+||||||++|+|||||+ ++|||+|..+..+|+. .+...+ ...
T Consensus 216 ~v~~lh~~----~R~~~~~~f~~g~-------~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~-~~~~~~~~~~d~ 282 (459)
T 2z83_A 216 KVIQLNRK----SYDTEYPKCKNGD-------WDFVITTDISEMGANFGA-SRVIDCRKSVKPTILE-EGEGRVILGNPS 282 (459)
T ss_dssp CEEEESTT----CCCCCGGGSSSCC-------CSEEEESSCC---CCCSC-SEEEECCEECCEEEEC-SSSCEEEECSCE
T ss_pred cEEecCHH----HHHHHHhhccCCC-------ceEEEECChHHhCeecCC-CEEEECCccccccccc-ccccccccccCC
Confidence 89999984 6889999999998 899999999999999999 9999999888887652 233333 337
Q ss_pred eccHhhHHHhccccCCC-C-CCeEEeccchh
Q 008221 391 PISKASAHQRSGRAGRT-Q-PGKCFRLYTEK 419 (573)
Q Consensus 391 p~s~~~~~qR~GRaGR~-~-~G~~~~l~t~~ 419 (573)
|.|.++|+||+|||||. . +|.||.|++..
T Consensus 283 p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 283 PITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999999999999999 3 99999999875
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-36 Score=348.96 Aligned_cols=344 Identities=16% Similarity=0.171 Sum_probs=240.4
Q ss_pred CccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEec
Q 008221 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (573)
..|..++++......+......+++++|.++++.+..|++++++|+||||||+.+..+++.... .+..++++.
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~-------~g~rvlvl~ 234 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-------NKQRVIYTS 234 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH-------TTCEEEEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh-------cCCeEEEEc
Confidence 3566677777666666667788999999999999999999999999999999998877765432 123456667
Q ss_pred CcccccccHHHHHHHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcccHHH
Q 008221 124 PRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDV 202 (573)
Q Consensus 124 p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~~d~ 202 (573)
|++..+.+.++.+....+ .++...| +.....+..|.++|+|++..++..... +.++++||+||+|. ..+. .
T Consensus 235 PtraLa~Q~~~~l~~~~~-~VglltG-----d~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~-l~d~-~ 306 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG-DVGLMTG-----DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY-MRDK-E 306 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS-SEEEECS-----SCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGG-TTSH-H
T ss_pred CcHHHHHHHHHHHHHHhC-CccEEeC-----ccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhh-cccc-c
Confidence 777777777777776554 2222222 112233567899999999998877765 88999999999994 3332 2
Q ss_pred HHHHHHHHHH-hCCCcEEEEecccc-cHHHHHchhC-----CCCeeeecCcccCCcccccCCCc---------------h
Q 008221 203 LFGLLKEVLK-NRPDLKLVVMSATL-EAEKFQGYFY-----GAPLMKVPGRLHPVEIFYTQEPE---------------R 260 (573)
Q Consensus 203 ll~~l~~l~~-~~~~~~iil~SATl-~~~~~~~~~~-----~~~~i~v~g~~~~v~~~y~~~~~---------------~ 260 (573)
....+..+.. ..++.++|++|||+ +...+++++. .+.++....+..|+++++..... .
T Consensus 307 rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~ 386 (1108)
T 3l9o_A 307 RGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREE 386 (1108)
T ss_dssp HHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHH
T ss_pred hHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhh
Confidence 2223333333 23489999999998 3445555442 23444445556666554422110 0
Q ss_pred hHH------------------------------------HHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHh
Q 008221 261 DYL------------------------------------EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEIT 304 (573)
Q Consensus 261 ~~~------------------------------------~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~ 304 (573)
.+. ...+..++..+.....+++|||++++.+++.++..|.....
T Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~ 466 (1108)
T 3l9o_A 387 NFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDF 466 (1108)
T ss_dssp HHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHH
T ss_pred hHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccC
Confidence 000 11222334444445677999999999999999998864311
Q ss_pred hcCCCC---------------------C---------CeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecc
Q 008221 305 NMGDQV---------------------G---------PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNI 354 (573)
Q Consensus 305 ~~~~~~---------------------~---------~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~i 354 (573)
...... + ...+..+||+|++.+|..+++.|+.|. .+|||||++
T Consensus 467 ~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~-------ikVLVAT~v 539 (1108)
T 3l9o_A 467 NSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGF-------LKVLFATET 539 (1108)
T ss_dssp HCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTC-------CCEEEEESC
T ss_pred CCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCC-------CeEEEECcH
Confidence 100000 0 011789999999999999999999998 999999999
Q ss_pred cccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCC---CCeEEeccchh
Q 008221 355 AETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEK 419 (573)
Q Consensus 355 ae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~---~G~~~~l~t~~ 419 (573)
+++|||||++++||+++. .||+.. ..|+|..+|+||+|||||.+ .|.||.++++.
T Consensus 540 la~GIDiP~v~~VI~~~~----~~d~~~------~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 540 FSIGLNMPAKTVVFTSVR----KWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCSCCCC--CEEEESCSE----EESSSC------EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred HhcCCCCCCceEEEecCc----ccCccc------cccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 999999999999999765 355442 23899999999999999996 89999999875
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.8e-35 Score=334.46 Aligned_cols=358 Identities=15% Similarity=0.137 Sum_probs=202.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC-hhhcCceEEEEecCcccccccHHHHH
Q 008221 58 ILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 58 ~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
.+...++..++++|.++++.+..|+++++.+|||||||+++..++++...... ....+.++++|++++..+....++.+
T Consensus 5 ~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~ 84 (696)
T 2ykg_A 5 DTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKY 84 (696)
T ss_dssp --CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999988877664322111 01123466667777766666655555
Q ss_pred HHhhhhcccchhceeeeeccc--ccccccccccCHHHHHHHHhcccc--cCCCcEEEEeCCCcCcccHHHHHHHHHHHHH
Q 008221 137 AEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHERTLATDVLFGLLKEVLK 212 (573)
Q Consensus 137 ~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lILDEa~~r~~~~d~ll~~l~~l~~ 212 (573)
....+..++...|........ ......|.++|+|++.+.+....+ +.++++||+||||...-.. ....++..+..
T Consensus 85 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~-~~~~i~~~~l~ 163 (696)
T 2ykg_A 85 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH-PYNMIMFNYLD 163 (696)
T ss_dssp TTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC-HHHHHHHHHHH
T ss_pred hccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc-cHHHHHHHHHH
Confidence 544444444444422111100 012467889999999998877654 7889999999999633222 22222222222
Q ss_pred h------CCCcEEEEeccccc-------H---HHHHchhC--CCCeeee----------------------cCccc----
Q 008221 213 N------RPDLKLVVMSATLE-------A---EKFQGYFY--GAPLMKV----------------------PGRLH---- 248 (573)
Q Consensus 213 ~------~~~~~iil~SATl~-------~---~~~~~~~~--~~~~i~v----------------------~g~~~---- 248 (573)
. .+..+++++|||+. . +.+...+. +.+++.. +.+..
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 243 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHH
Confidence 1 24789999999985 1 11211110 1111100 00000
Q ss_pred --------------------------------------------------------------------------------
Q 008221 249 -------------------------------------------------------------------------------- 248 (573)
Q Consensus 249 -------------------------------------------------------------------------------- 248 (573)
T Consensus 244 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 323 (696)
T 2ykg_A 244 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 323 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHH
Confidence
Q ss_pred ----------------------------CCcccccC----------------CCchhHHHHHHHHHHHHhhcCCCCCEEE
Q 008221 249 ----------------------------PVEIFYTQ----------------EPERDYLEAAIRTVVQIHMCEPSGDILV 284 (573)
Q Consensus 249 ----------------------------~v~~~y~~----------------~~~~~~~~~~~~~l~~i~~~~~~g~iLV 284 (573)
++++.+.. .....++..+...+.......+.+++||
T Consensus 324 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~II 403 (696)
T 2ykg_A 324 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403 (696)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEE
Confidence 00000000 0011122222222222222345678999
Q ss_pred ecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEe--------cCCCCHHHHhhhcCCCCC-CCCCCCCCCceEEEeeccc
Q 008221 285 FLTGEEEIEDACRKITKEITNMGDQVGPVKVVPL--------YSTLPPAMQQKIFEPAPP-PSKEGGPPGRKIVVSTNIA 355 (573)
Q Consensus 285 Fl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~l--------h~~l~~~~r~~~~~~~~~-g~~~~~~~~~kvllaT~ia 355 (573)
|++++..++.+++.|.... ....+.+..+ ||+|++++|.++++.|+. |. .+|||||++|
T Consensus 404 F~~~~~~~~~l~~~L~~~~-----~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~-------~~vLVaT~v~ 471 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGNP-----KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD-------HNILIATSVA 471 (696)
T ss_dssp ECSCHHHHHHHHHHHHHCT-----TCCSCCEEC-----------------------------C-------CSCSEEEESS
T ss_pred EeCcHHHHHHHHHHHHhCC-----CccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCC-------ccEEEEechh
Confidence 9999999999999998741 1122667777 669999999999999998 88 8999999999
Q ss_pred ccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhh---------hhcC
Q 008221 356 ETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN---------NDLQ 426 (573)
Q Consensus 356 e~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~---------~~~~ 426 (573)
|+|||||+|++||+||+ |.|.++|+||+|| ||.++|.||.|+++.+.. +.+.
T Consensus 472 ~~GiDip~v~~VI~~d~------------------p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~~ 532 (696)
T 2ykg_A 472 DEGIDIAQCNLVILYEY------------------VGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMM 532 (696)
T ss_dssp CCC---CCCSEEEEESC------------------C--CCCC----------CCCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hcCCcCccCCEEEEeCC------------------CCCHHHHHHhhcc-CcCCCceEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998 9999999999999 999999999999987661 1244
Q ss_pred CCChhhhhccCchhHHHHHHH
Q 008221 427 PQTYPEILRSNLANTVLTLKK 447 (573)
Q Consensus 427 ~~~~pei~r~~l~~~~L~~k~ 447 (573)
....||+.+.+.+.++.+++.
T Consensus 533 ~~~~~~~~~~~~~~~~~~i~~ 553 (696)
T 2ykg_A 533 NDSILRLQTWDEAVFREKILH 553 (696)
T ss_dssp HHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhccCHHHHHHHHHH
Confidence 456788888888887776654
No 25
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.3e-35 Score=328.20 Aligned_cols=317 Identities=20% Similarity=0.275 Sum_probs=216.2
Q ss_pred cCC-CCCChHHHHHHHH--hcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEe
Q 008221 46 WNG-KPYSQRYYEILEK--RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (573)
Q Consensus 46 f~~-~~l~~~~~~~l~~--~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t 122 (573)
|.+ +++++++++.+.. +..+|++.. .++.+.+|+++++.|+||||||+++..+++.... . ...+.++++
T Consensus 151 ~~~~l~~~~~~~~~l~~~~~~~lpiq~~---~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~-~--~~~~vLvl~-- 222 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQAERIGEPDYEV---DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREAL-K--RRLRTLILA-- 222 (618)
T ss_dssp CC---------CEECBCCCCCCCCCCCC---CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHH-H--TTCCEEEEE--
T ss_pred ccccccchHHHHHHHhhccccCCCcccc---CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHH-h--CCCeEEEEc--
Confidence 444 6678887776655 556777654 4999999999999999999999997665554322 1 112234444
Q ss_pred cCcccccccHHHHHHHhhhhcccchhceeeee-cccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHH
Q 008221 123 QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRF-EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATD 201 (573)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~-~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d 201 (573)
|++..+.++.+.+. +..+++.... .......+.+.+++.|.+.+.++....+.++++||+||||+.....+
T Consensus 223 -PtreLa~Qi~~~l~-------~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~ 294 (618)
T 2whx_A 223 -PTRVVAAEMEEALR-------GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSV 294 (618)
T ss_dssp -SSHHHHHHHHHHTT-------TSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHH
T ss_pred -ChHHHHHHHHHHhc-------CCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHH
Confidence 55444434443332 1223333221 11223455677889999998888887899999999999998655555
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccHHHHHchhC-CCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCC
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSG 280 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~~~~~~~~~-~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g 280 (573)
..+..+...... ++.++++||||++.. ...++. +.+.+.+... +|.+. ... .+..+ . +..+
T Consensus 295 ~~~~~i~~~l~~-~~~q~il~SAT~~~~-~~~~~~~~~~~~~v~~~-~~~~~------~~~----ll~~l---~--~~~~ 356 (618)
T 2whx_A 295 AARGYISTRVEM-GEAAAIFMTATPPGS-TDPFPQSNSPIEDIERE-IPERS------WNT----GFDWI---T--DYQG 356 (618)
T ss_dssp HHHHHHHHHHHH-TSCEEEEECSSCTTC-CCSSCCCSSCEEEEECC-CCSSC------CSS----SCHHH---H--HCCS
T ss_pred HHHHHHHHHhcc-cCccEEEEECCCchh-hhhhhccCCceeeeccc-CCHHH------HHH----HHHHH---H--hCCC
Confidence 555555555433 479999999999643 112222 3344444332 11110 001 11111 1 1367
Q ss_pred CEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccc
Q 008221 281 DILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLT 360 (573)
Q Consensus 281 ~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~git 360 (573)
++|||++++.+++.+++.|.+. ++.+..+||+ +|.++++.|++|. .+||||||++|+|||
T Consensus 357 ~~LVF~~s~~~a~~l~~~L~~~---------g~~v~~lhg~----~R~~~l~~F~~g~-------~~VLVaTdv~~rGiD 416 (618)
T 2whx_A 357 KTVWFVPSIKAGNDIANCLRKS---------GKRVIQLSRK----TFDTEYPKTKLTD-------WDFVVTTDISEMGAN 416 (618)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTT----THHHHTTHHHHSC-------CSEEEECGGGGTTCC
T ss_pred CEEEEECChhHHHHHHHHHHHc---------CCcEEEEChH----HHHHHHHhhcCCC-------cEEEEECcHHHcCcc
Confidence 9999999999999999999875 6789999984 6788999999988 899999999999999
Q ss_pred cCCeEEEEcCCcccceee--cccCCcccceeeeccHhhHHHhccccCCCC--CCeEEeccc
Q 008221 361 IDGIVYVIDPGFAKQKVY--NPRVRVESLLVSPISKASAHQRSGRAGRTQ--PGKCFRLYT 417 (573)
Q Consensus 361 I~~V~~VId~g~~k~~~~--d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~--~G~~~~l~t 417 (573)
|| |++|||+|+.+.+++ +...++......|.|.++|+||+|||||.+ +|.||.|++
T Consensus 417 i~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 417 FR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp CC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 97 999999999877665 444456566777999999999999999993 899999998
No 26
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.1e-34 Score=316.21 Aligned_cols=328 Identities=16% Similarity=0.198 Sum_probs=231.6
Q ss_pred CccCCCCCChHHHHHHHH-hcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEe
Q 008221 44 NRWNGKPYSQRYYEILEK-RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~-~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t 122 (573)
..|+++++++.+.+.+++ .++..++++|.++++.+.+|+++++++|||||||+.+..+.+... ...+++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~-------g~~lvi--- 71 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN-------GLTVVV--- 71 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSS-------SEEEEE---
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhC-------CCEEEE---
Confidence 469999999999999988 789999999999999999999999999999999997665555321 112333
Q ss_pred cCcccccccHHHHHHHhhhhcccchhceeeee------cccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCc
Q 008221 123 QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRF------EDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHE 195 (573)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~------~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~ 195 (573)
.|++..+....+.+.. .+.......+..... .........+.++|++++........+ ..+++++|+||||.
T Consensus 72 ~P~~aL~~q~~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~ 150 (523)
T 1oyw_A 72 SPLISLMKDQVDQLQA-NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHC 150 (523)
T ss_dssp CSCHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGG
T ss_pred CChHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccc
Confidence 3444333344444433 222221111110000 001112356788999988532222222 47889999999996
Q ss_pred CcccH---HHHHHHHHHHHHhCCCcEEEEecccccHH---HHHchhC-CCCeeeecCcccCCcccccCCCchhHHHHHHH
Q 008221 196 RTLAT---DVLFGLLKEVLKNRPDLKLVVMSATLEAE---KFQGYFY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIR 268 (573)
Q Consensus 196 r~~~~---d~ll~~l~~l~~~~~~~~iil~SATl~~~---~~~~~~~-~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~ 268 (573)
-.... ...+..+..+....|+.+++++|||.... .+.++++ ..+.+.+.+...+ ...|......+....+..
T Consensus 151 i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-~l~~~v~~~~~~~~~l~~ 229 (523)
T 1oyw_A 151 ISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYMLMEKFKPLDQLMR 229 (523)
T ss_dssp GCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCT-TEEEEEEECSSHHHHHHH
T ss_pred cCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCC-ceEEEEEeCCCHHHHHHH
Confidence 32211 11233444555666789999999999754 3444443 4455555443322 233332233334333333
Q ss_pred HHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceE
Q 008221 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 348 (573)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kv 348 (573)
. ......+++|||++++.+++.+++.|... ++.+..+||+|++++|.++++.|..|. .+|
T Consensus 230 ~----l~~~~~~~~IVf~~sr~~~e~l~~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~f~~g~-------~~v 289 (523)
T 1oyw_A 230 Y----VQEQRGKSGIIYCNSRAKVEDTAARLQSK---------GISAAAYHAGLENNVRADVQEKFQRDD-------LQI 289 (523)
T ss_dssp H----HHHTTTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTS-------CSE
T ss_pred H----HHhcCCCcEEEEeCCHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHHcCC-------CeE
Confidence 2 23345678999999999999999999875 778999999999999999999999988 899
Q ss_pred EEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 349 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 349 llaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
||||+++++|||+|+|++||++|+ |.|.++|.||+|||||. .+|.|+.+|+.++.
T Consensus 290 lVaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~ 345 (523)
T 1oyw_A 290 VVATVAFGMGINKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (523)
T ss_dssp EEECTTSCTTTCCTTCCEEEESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred EEEechhhCCCCccCccEEEEECC------------------CCCHHHHHHHhccccCCCCCceEEEEeCHHHH
Confidence 999999999999999999999999 99999999999999999 69999999998876
No 27
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-35 Score=321.99 Aligned_cols=335 Identities=19% Similarity=0.250 Sum_probs=196.6
Q ss_pred CccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcC--CEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEE
Q 008221 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN--QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIAC 121 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g--~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~ 121 (573)
..|...++++++.+.+..+++..++++|.++++.+.+| +++++.||||||||..+..+++.... ......+ +++
T Consensus 119 ~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~-~~~~~~~---vLv 194 (508)
T 3fho_A 119 XXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVD-ASVPKPQ---AIC 194 (508)
T ss_dssp --------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSC-TTCCSCC---EEE
T ss_pred ccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHH-hCCCCce---EEE
Confidence 34566678888999999999999999999999999998 99999999999999987766664432 1111112 333
Q ss_pred ecCcccccccHHHHHHHhhhh-cccchhceeeeecccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCccc
Q 008221 122 TQPRRVAAMSVSRRVAEEMDV-TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (573)
Q Consensus 122 t~p~~~~~~~v~~~v~~~~~~-~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~ 199 (573)
..|++..+.++.+.+...... ......++.............|.++|++++...+....+ +.++++||+||+|.-. .
T Consensus 195 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~-~ 273 (508)
T 3fho_A 195 LAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNML-D 273 (508)
T ss_dssp ECSCHHHHHHHHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHT-T
T ss_pred EECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhc-c
Confidence 445544444555555443211 111111111111111223567889999999988877665 8899999999999522 1
Q ss_pred HHHHHHHHHHHHHh-CCCcEEEEeccccc--HHHHHchhC-CCCeeeecCccc---CCcccccCCCchhHHHHHHHHHHH
Q 008221 200 TDVLFGLLKEVLKN-RPDLKLVVMSATLE--AEKFQGYFY-GAPLMKVPGRLH---PVEIFYTQEPERDYLEAAIRTVVQ 272 (573)
Q Consensus 200 ~d~ll~~l~~l~~~-~~~~~iil~SATl~--~~~~~~~~~-~~~~i~v~g~~~---~v~~~y~~~~~~~~~~~~~~~l~~ 272 (573)
...+...+..+... .++.+++++|||++ .+.+...+. +...+.+..... .+...+......+. ....+..
T Consensus 274 ~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~ 350 (508)
T 3fho_A 274 QQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEH---KYNVLVE 350 (508)
T ss_dssp C--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHH---HHHHHHH
T ss_pred cCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHH---HHHHHHH
Confidence 12233333334333 33789999999996 445554444 433343333222 23344433322221 2233444
Q ss_pred HhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEee
Q 008221 273 IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST 352 (573)
Q Consensus 273 i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT 352 (573)
+......+++|||++++..++.+++.|.+. ++.+..+||++++.+|..+++.|+.|. .+|||||
T Consensus 351 ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~---------~~~v~~~hg~~~~~~R~~il~~f~~g~-------~~VLVaT 414 (508)
T 3fho_A 351 LYGLLTIGQSIIFCKKKDTAEEIARRMTAD---------GHTVACLTGNLEGAQRDAIMDSFRVGT-------SKVLVTT 414 (508)
T ss_dssp HHC---CCCEEEBCSSTTTTTHHHHHHTTT---------TCCCCEEC-----CTTGGGTHHHHSSS-------CCCCEEC
T ss_pred HHHhcCCCcEEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHCCC-------CeEEEeC
Confidence 444456789999999999999999998753 677899999999999999999999988 8999999
Q ss_pred cccccccccCCeEEEEcCCcccceeecccCCcccceeee------ccHhhHHHhccccCCC-CCCeEEeccchhh
Q 008221 353 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP------ISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (573)
Q Consensus 353 ~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p------~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (573)
+++++|+|+|++++||+++. | .|..+|+||+|||||. ++|.|+.+++..+
T Consensus 415 ~~l~~GiDip~v~~VI~~~~------------------p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~ 471 (508)
T 3fho_A 415 NVIARGIDVSQVNLVVNYDM------------------PLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK 471 (508)
T ss_dssp C-----CCCTTCCEEEC----------------------CC-----CTHHHHHTTSCCC-----CEEEEEECTTT
T ss_pred ChhhcCCCccCCCEEEEECC------------------CCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChH
Confidence 99999999999999999987 6 7889999999999999 7899999998543
No 28
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.5e-33 Score=306.18 Aligned_cols=333 Identities=13% Similarity=0.131 Sum_probs=169.9
Q ss_pred hcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 62 RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 62 ~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
++...++++|.++++.+..|+++++.+|||||||.++..+++....... ....+.++++|+.++..+.....+.+....
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 3567899999999999999999999999999999988766654322111 012334556666666665555555555544
Q ss_pred hhcccchhceeeeeccc--ccccccccccCHHHHHHHHhcccc--cCCCcEEEEeCCCcCcccHHHHHHHHHHHHHh---
Q 008221 141 DVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHERTLATDVLFGLLKEVLKN--- 213 (573)
Q Consensus 141 ~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~--- 213 (573)
+..++...|........ ......|.++|+|++.+.+....+ +.++++||+||||.- .....+..++..+...
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~-~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNT-TGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGC-STTSHHHHHHHHHHHHHHC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCccc-CCcchHHHHHHHHHHhhhc
Confidence 55554444433111110 112356889999999998876554 788999999999953 2222333444343322
Q ss_pred --CCCcEEEEecccccH----------H---HHHchhCCCCeeeecCc---------ccCCccc--ccC---C-------
Q 008221 214 --RPDLKLVVMSATLEA----------E---KFQGYFYGAPLMKVPGR---------LHPVEIF--YTQ---E------- 257 (573)
Q Consensus 214 --~~~~~iil~SATl~~----------~---~~~~~~~~~~~i~v~g~---------~~~v~~~--y~~---~------- 257 (573)
.+..+++++|||+.. + .+...+. ...+..... ..|.... +.. .
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLD-IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHT-CSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcC-CeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHH
Confidence 346899999999921 1 1112221 111111000 0000000 000 0
Q ss_pred --------------------------------------------------------------------------------
Q 008221 258 -------------------------------------------------------------------------------- 257 (573)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (573)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (556)
T 4a2p_A 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 320 (556)
T ss_dssp HHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred ------------------------------------------------CchhHHHHHHHHHHHHhhcCCCCCEEEecCcH
Q 008221 258 ------------------------------------------------PERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 289 (573)
Q Consensus 258 ------------------------------------------------~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 289 (573)
....++..+...+.......+.+++|||++++
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 321 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400 (556)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccH
Confidence 00111122222222222235678999999999
Q ss_pred HHHHHHHHHHHHHHhhcC---CCCCCeEEEEecCCCCHHHHhhhcCCCCC-CCCCCCCCCceEEEeecccccccccCCeE
Q 008221 290 EEIEDACRKITKEITNMG---DQVGPVKVVPLYSTLPPAMQQKIFEPAPP-PSKEGGPPGRKIVVSTNIAETSLTIDGIV 365 (573)
Q Consensus 290 ~~i~~~~~~L~~~~~~~~---~~~~~~~v~~lh~~l~~~~r~~~~~~~~~-g~~~~~~~~~kvllaT~iae~gitI~~V~ 365 (573)
..++.+++.|.....-.. ....+.....+||+|++.+|.++++.|+. |. .+|||||+++++|||+|+|+
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~-------~~vLvaT~~~~~GiDip~v~ 473 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD-------NRLLIATSVADEGIDIVQCN 473 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC-------------------------------------CCEEEEEC-----------C
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCc-------eEEEEEcCchhcCCCchhCC
Confidence 999999999965310000 00114455677899999999999999998 87 89999999999999999999
Q ss_pred EEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhh
Q 008221 366 YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN 422 (573)
Q Consensus 366 ~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~ 422 (573)
+||+|++ |-|..+|+||+|| ||.++|.||.|+++.+.+
T Consensus 474 ~VI~~d~------------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 474 LVVLYEY------------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 511 (556)
T ss_dssp EEEEETC------------------CSCHHHHHHC---------CCEEEEESCHHHH
T ss_pred EEEEeCC------------------CCCHHHHHHhcCC-CCCCCceEEEEEeCcchH
Confidence 9999998 9999999999999 999999999999988764
No 29
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9e-32 Score=324.95 Aligned_cols=452 Identities=13% Similarity=0.123 Sum_probs=285.5
Q ss_pred CChHHHHHHHHhcCCCChHHHHHHHHHHh-cCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCccccc
Q 008221 51 YSQRYYEILEKRKSLPVWQQKEEFLQVLK-ANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAA 129 (573)
Q Consensus 51 l~~~~~~~l~~~~~lp~~~~q~~~i~~i~-~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~ 129 (573)
+.++.++.+...++...+++|.++++.+. .++++++.+|||||||+.+-.+++....... +..+++..|.+..+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-----~~kavyi~P~raLa 985 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-----EGRCVYITPMEALA 985 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-----TCCEEEECSCHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-----CCEEEEEcChHHHH
Confidence 33566666767788889999999999985 5678999999999999988766654332111 12244555666555
Q ss_pred ccHHHHHHHhhhhcccchhceeee---ecccccccccccccCHHHHHHHHh---cccccCCCcEEEEeCCCcCcccH---
Q 008221 130 MSVSRRVAEEMDVTIGEEVGYSIR---FEDCSSARTVLKYLTDGMLLREAM---TDPLLERYKVIVLDEAHERTLAT--- 200 (573)
Q Consensus 130 ~~v~~~v~~~~~~~~~~~vg~~~~---~~~~~~~~~~i~~lT~G~l~r~~~---~~~ll~~~~~lILDEa~~r~~~~--- 200 (573)
...++.+.+..+...+..|+.... .+.....+..|.++|+|++..++. .+..+.+++++|+||+|.-....
T Consensus 986 ~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~ 1065 (1724)
T 4f92_B 986 EQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPV 1065 (1724)
T ss_dssp HHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHH
T ss_pred HHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCcc
Confidence 556665554443322322321110 111111345788999998755443 23358899999999999522122
Q ss_pred -HHHHHHHHHHHHhC-CCcEEEEecccc-cHHHHHchhCCC--CeeeecCcccC--CcccccCCCc---hhHHHHHHHHH
Q 008221 201 -DVLFGLLKEVLKNR-PDLKLVVMSATL-EAEKFQGYFYGA--PLMKVPGRLHP--VEIFYTQEPE---RDYLEAAIRTV 270 (573)
Q Consensus 201 -d~ll~~l~~l~~~~-~~~~iil~SATl-~~~~~~~~~~~~--~~i~v~g~~~~--v~~~y~~~~~---~~~~~~~~~~l 270 (573)
..++..++.+.... ++.++|++|||+ +.+.+++|++.. .+..+.....| .+.+...... ..........+
T Consensus 1066 le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~ 1145 (1724)
T 4f92_B 1066 LEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPV 1145 (1724)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchH
Confidence 22333334443332 478999999999 688899998642 33333333233 3333221111 11111111111
Q ss_pred H-HHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCC-------------------------CCeEEEEecCCCCH
Q 008221 271 V-QIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQV-------------------------GPVKVVPLYSTLPP 324 (573)
Q Consensus 271 ~-~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~-------------------------~~~~v~~lh~~l~~ 324 (573)
. .+....+.+++|||++++..++.++..|........... -...+..+||+|++
T Consensus 1146 ~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~ 1225 (1724)
T 4f92_B 1146 YHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSP 1225 (1724)
T ss_dssp HHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCH
T ss_pred HHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCH
Confidence 1 122335677899999999999999888765432110000 01237889999999
Q ss_pred HHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhcccc
Q 008221 325 AMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRA 404 (573)
Q Consensus 325 ~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRa 404 (573)
.+|..+.+.|+.|. .+||+||+.+++|||+|.+++||... ..||.... ...|.+..+|.||+|||
T Consensus 1226 ~~R~~VE~lF~~G~-------i~VLvaT~tlA~GVnlPa~~VVI~~~----~~~dg~~~----~~~~~s~~~~~Qm~GRA 1290 (1724)
T 4f92_B 1226 MERRLVEQLFSSGA-------IQVVVASRSLCWGMNVAAHLVIIMDT----QYYNGKIH----AYVDYPIYDVLQMVGHA 1290 (1724)
T ss_dssp HHHHHHHHHHHHTS-------BCEEEEEGGGSSSCCCCBSEEEEECS----EEEETTTT----EEEECCHHHHHHHHTTB
T ss_pred HHHHHHHHHHHCCC-------CeEEEEChHHHcCCCCCccEEEEecC----ccccCccc----ccCCCCHHHHHHhhccc
Confidence 99999999999998 99999999999999999999999643 45665433 22489999999999999
Q ss_pred CCCC---CCeEEeccchhhhh--hhcCCCChhhhhccCc----hhHHHHHHHcCC-Ccc---cc----------------
Q 008221 405 GRTQ---PGKCFRLYTEKSFN--NDLQPQTYPEILRSNL----ANTVLTLKKLGI-DDL---VH---------------- 455 (573)
Q Consensus 405 GR~~---~G~~~~l~t~~~~~--~~~~~~~~pei~r~~l----~~~~L~~k~~~~-~~~---~~---------------- 455 (573)
||.+ .|.|+.++++.+.. ..+-.. |+-..+.| .+.++.....|. .+. ..
T Consensus 1291 GR~g~d~~G~avll~~~~~~~~~~~ll~~--~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~ 1368 (1724)
T 4f92_B 1291 NRPLQDDEGRCVIMCQGSKKDFFKKFLYE--PLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPN 1368 (1724)
T ss_dssp CCTTTCSCEEEEEEEEGGGHHHHHHHTTS--CBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGG
T ss_pred cCCCCCCceEEEEEecchHHHHHHHHhCC--CCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcc
Confidence 9983 79999998765432 122111 22223333 222332222221 110 00
Q ss_pred -cc-------CCCCCcHHHHHHHHHHHHHcCCcc--CCCC--cChhhhhhhcCCCChhhhhhhhhCCCCCCH-HHHHHHH
Q 008221 456 -FD-------FMDPPAPETLMRALEVLNYLGALD--DDGN--LTEMGEKMSEFPLDPQMSKMLVESPKYNCS-NEILSIS 522 (573)
Q Consensus 456 -~~-------~~~pP~~~~~~~a~~~L~~lgald--~~~~--lT~lG~~~~~lp~~p~~~~~l~~~~~~~c~-~~~~~i~ 522 (573)
.. -++....+.++.+++.|.+.|+|. ++++ .|++|+.++.++++|..++++..+....+. ..++.+.
T Consensus 1369 ~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il 1448 (1724)
T 4f92_B 1369 YYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEII 1448 (1724)
T ss_dssp GTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHh
Confidence 00 011122355788999999999995 4443 699999999999999999999988776663 4555555
Q ss_pred Hh
Q 008221 523 AM 524 (573)
Q Consensus 523 a~ 524 (573)
|.
T Consensus 1449 ~~ 1450 (1724)
T 4f92_B 1449 SN 1450 (1724)
T ss_dssp HT
T ss_pred cC
Confidence 43
No 30
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.6e-34 Score=331.11 Aligned_cols=323 Identities=15% Similarity=0.138 Sum_probs=217.7
Q ss_pred CCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhh-hhc
Q 008221 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM-DVT 143 (573)
Q Consensus 65 lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~-~~~ 143 (573)
.+++++|.++++.+.+|++++++||||||||+.+..++..... .+..++++.|++..+.++++.+.+.. +..
T Consensus 38 f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-------~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~ 110 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-------NMTKTIYTSPIKALSNQKFRDFKETFDDVN 110 (997)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-------TTCEEEEEESCGGGHHHHHHHHHTTC--CC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-------cCCeEEEEeCCHHHHHHHHHHHHHHcCCCe
Confidence 3469999999999999999999999999999865443332111 12334556677766677777777654 333
Q ss_pred ccchhceeeeecccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEe
Q 008221 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (573)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~ 222 (573)
++...|.. ....+..+.++|+|++...+..... +.++++||+||+|. ..+.+.-..+...+....++.++|++
T Consensus 111 v~~l~G~~-----~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~-l~d~~~g~~~e~ii~~l~~~v~iIlL 184 (997)
T 4a4z_A 111 IGLITGDV-----QINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHY-VNDQDRGVVWEEVIIMLPQHVKFILL 184 (997)
T ss_dssp EEEECSSC-----EECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTC-CCTTCTTCCHHHHHHHSCTTCEEEEE
T ss_pred EEEEeCCC-----ccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECccc-ccccchHHHHHHHHHhcccCCCEEEE
Confidence 33333321 1223467889999999888766554 88999999999994 33222111111112223347999999
Q ss_pred cccc-cHHHHHchhC-----CCCeeeecCcccCCcccccCCCc-------------hhHH--------------------
Q 008221 223 SATL-EAEKFQGYFY-----GAPLMKVPGRLHPVEIFYTQEPE-------------RDYL-------------------- 263 (573)
Q Consensus 223 SATl-~~~~~~~~~~-----~~~~i~v~g~~~~v~~~y~~~~~-------------~~~~-------------------- 263 (573)
|||+ +...|++++. ++.++..+.+..|+++++..... ..+.
T Consensus 185 SAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 264 (997)
T 4a4z_A 185 SATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDN 264 (997)
T ss_dssp ECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------
T ss_pred cCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccc
Confidence 9999 5677888774 23345556666666654421000 0000
Q ss_pred --------------------------------------------------------HHHHHHHHHHhhcCCCCCEEEecC
Q 008221 264 --------------------------------------------------------EAAIRTVVQIHMCEPSGDILVFLT 287 (573)
Q Consensus 264 --------------------------------------------------------~~~~~~l~~i~~~~~~g~iLVFl~ 287 (573)
...+..+.........+++|||++
T Consensus 265 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~ 344 (997)
T 4a4z_A 265 GRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVF 344 (997)
T ss_dssp ----------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEEC
Confidence 001223444444556789999999
Q ss_pred cHHHHHHHHHHHHHHHhh--------------cCCCC----------------CCeEEEEecCCCCHHHHhhhcCCCCCC
Q 008221 288 GEEEIEDACRKITKEITN--------------MGDQV----------------GPVKVVPLYSTLPPAMQQKIFEPAPPP 337 (573)
Q Consensus 288 ~~~~i~~~~~~L~~~~~~--------------~~~~~----------------~~~~v~~lh~~l~~~~r~~~~~~~~~g 337 (573)
++.+++.++..|...... ..... -...+..+||+|++.+|..+++.|..|
T Consensus 345 sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G 424 (997)
T 4a4z_A 345 SKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKG 424 (997)
T ss_dssp CHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCC
Confidence 999999999888541000 00000 011378999999999999999999999
Q ss_pred CCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCC---CCeEEe
Q 008221 338 SKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFR 414 (573)
Q Consensus 338 ~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~---~G~~~~ 414 (573)
. .+|||||+++++|||+|++.+|+ ++.. .||+.. ..|+|.++|+||+|||||.+ .|.||.
T Consensus 425 ~-------~kVLvAT~~~a~GIDiP~~~VVi-~~~~---k~dg~~------~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~ 487 (997)
T 4a4z_A 425 F-------IKVLFATETFAMGLNLPTRTVIF-SSIR---KHDGNG------LRELTPGEFTQMAGRAGRRGLDSTGTVIV 487 (997)
T ss_dssp C-------CSEEEECTHHHHSCCCCCSEEEE-SCSE---EEETTE------EEECCHHHHHHHHGGGCCTTTCSSEEEEE
T ss_pred C-------CcEEEEchHhhCCCCCCCceEEE-eccc---cccCcc------CCCCCHHHHhHHhcccccCCCCcceEEEE
Confidence 8 99999999999999999955555 5553 355542 23999999999999999974 899999
Q ss_pred ccc
Q 008221 415 LYT 417 (573)
Q Consensus 415 l~t 417 (573)
++.
T Consensus 488 l~~ 490 (997)
T 4a4z_A 488 MAY 490 (997)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.3e-33 Score=299.74 Aligned_cols=313 Identities=14% Similarity=0.114 Sum_probs=203.4
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHH
Q 008221 54 RYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVS 133 (573)
Q Consensus 54 ~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~ 133 (573)
.+.+.+++.....++++|.++++.+.+|+++++.+|||||||+++..+++.... ...+.++++|++++..+.....
T Consensus 9 ~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 9 DFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc----CCCEEEEEECCHHHHHHHHHHH
Confidence 345556665455789999999999999999999999999999966555443221 1123455665555544443333
Q ss_pred HHHHHhhhhcccchhceeee---e---cccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCc---------Ccc
Q 008221 134 RRVAEEMDVTIGEEVGYSIR---F---EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHE---------RTL 198 (573)
Q Consensus 134 ~~v~~~~~~~~~~~vg~~~~---~---~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~---------r~~ 198 (573)
..+.. .+..++...|.... . ......+..|.++|+|++.+.+.. ..+.+++++|+||+|. +.+
T Consensus 85 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l 162 (414)
T 3oiy_A 85 QKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLL 162 (414)
T ss_dssp HHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHH
T ss_pred HHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHH
Confidence 33222 23333333332211 0 001111267889999999776543 3367999999999984 111
Q ss_pred c-HHHHHHHHHHHHHh------------CCCcEEEEecccc-cHH---HHHchhCCCCeeeecCcccCCcccccCCCchh
Q 008221 199 A-TDVLFGLLKEVLKN------------RPDLKLVVMSATL-EAE---KFQGYFYGAPLMKVPGRLHPVEIFYTQEPERD 261 (573)
Q Consensus 199 ~-~d~ll~~l~~l~~~------------~~~~~iil~SATl-~~~---~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~ 261 (573)
+ .++....+..+... .++.+++++|||+ +.. .+...+.+..+.........+.+.|......+
T Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 242 (414)
T 3oiy_A 163 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKE 242 (414)
T ss_dssp HHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSEEEEEESSCCHH
T ss_pred hhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCccccccccchheeeccCHHH
Confidence 1 11111112222221 1478999999994 321 22222222111111122334556665554333
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEE-EecCCCCHHHHhhhcCCCCCCCCC
Q 008221 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV-PLYSTLPPAMQQKIFEPAPPPSKE 340 (573)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~~~~~~~~g~~~ 340 (573)
. +...+.. .++++|||++++..++.+++.|... ++.+. .+||. +|+ ++.|++|.
T Consensus 243 ~---l~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~h~~----~r~--~~~f~~g~-- 297 (414)
T 3oiy_A 243 K---LVELLEI-----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF----EKN--FEDFKVGK-- 297 (414)
T ss_dssp H---HHHHHHH-----HCSSEEEEESSHHHHHHHHHHHHHT---------TCCEEESSSCH----HHH--HHHHHTTS--
T ss_pred H---HHHHHHH-----cCCCEEEEECCHHHHHHHHHHHHHc---------CCceehhhcCc----chH--HHHHhCCC--
Confidence 3 2222222 2378999999999999999999875 67787 99985 333 88899888
Q ss_pred CCCCCceEEEe----ecccccccccCC-eEEEEcCCcccceeecccCCcccceeee--ccHhhHHHhccccCCCC-----
Q 008221 341 GGPPGRKIVVS----TNIAETSLTIDG-IVYVIDPGFAKQKVYNPRVRVESLLVSP--ISKASAHQRSGRAGRTQ----- 408 (573)
Q Consensus 341 ~~~~~~kvlla----T~iae~gitI~~-V~~VId~g~~k~~~~d~~~~~~~l~~~p--~s~~~~~qR~GRaGR~~----- 408 (573)
.+|||| ||++++|||+|+ |++||++|+ | .|.++|+||+|||||.+
T Consensus 298 -----~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~------------------p~~~~~~~y~qr~GR~gR~g~~~~~ 354 (414)
T 3oiy_A 298 -----INILIGVQAYYGKLTRGVDLPERIKYVIFWGT------------------PSGPDVYTYIQASGRSSRILNGVLV 354 (414)
T ss_dssp -----CSEEEEECCTTCCCCCCCCCTTTCCEEEEESC------------------CTTTCHHHHHHHHGGGCCEETTEEC
T ss_pred -----CeEEEEecCcCchhhccCccccccCEEEEECC------------------CCCCCHHHHHHHhCccccCCCCCCc
Confidence 899999 999999999999 999999999 9 89999999999999983
Q ss_pred CCeEEeccchhh
Q 008221 409 PGKCFRLYTEKS 420 (573)
Q Consensus 409 ~G~~~~l~t~~~ 420 (573)
+|.||.|+.+..
T Consensus 355 ~g~~i~~~~~~~ 366 (414)
T 3oiy_A 355 KGVSVIFEEDEE 366 (414)
T ss_dssp CEEEEEECCCHH
T ss_pred ceEEEEEEccHH
Confidence 799999995443
No 32
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.98 E-value=3.3e-33 Score=310.08 Aligned_cols=310 Identities=18% Similarity=0.197 Sum_probs=200.5
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeecccc
Q 008221 79 KANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS 158 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~ 158 (573)
.+|++++++||||||||+.+.+.+.... .++ ...|++..+.++++++.. .+..++...|....
T Consensus 153 l~rk~vlv~apTGSGKT~~al~~l~~~~--------~gl---~l~PtR~LA~Qi~~~l~~-~g~~v~lltG~~~~----- 215 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYHAIQKYFSAK--------SGV---YCGPLKLLAHEIFEKSNA-AGVPCDLVTGEERV----- 215 (677)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHSS--------SEE---EEESSHHHHHHHHHHHHH-TTCCEEEECSSCEE-----
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC--------CeE---EEeCHHHHHHHHHHHHHh-cCCcEEEEECCeeE-----
Confidence 4788999999999999996665555431 122 336777777778877754 34444444443211
Q ss_pred cccccccccCHHHHHHHHhcc----cccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhC-CCcEEEEecccccH-HHHH
Q 008221 159 SARTVLKYLTDGMLLREAMTD----PLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVMSATLEA-EKFQ 232 (573)
Q Consensus 159 ~~~~~i~~lT~G~l~r~~~~~----~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~-~~~~iil~SATl~~-~~~~ 232 (573)
...|+|+..+++... .+...++++|+||+|+. .+.+.-..+...+.... ++.+++++|||.+. ..+.
T Consensus 216 ------iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l-~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~ 288 (677)
T 3rc3_A 216 ------TVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMI-RDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELM 288 (677)
T ss_dssp ------CCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGG-GCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHH
T ss_pred ------EecCCCcccceeEecHhHhhhcccCCEEEEecceec-CCccchHHHHHHHHccCccceEEEeccchHHHHHHHH
Confidence 223333332222221 23567899999999963 33333222222333322 37899999999753 3333
Q ss_pred chhCCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCC
Q 008221 233 GYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP 312 (573)
Q Consensus 233 ~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~ 312 (573)
...+....+....+..+. .+....-. . .....+|+ +||++++.+++.+++.|.+. +
T Consensus 289 ~~~~~~~~v~~~~r~~~l--~~~~~~l~--------~----l~~~~~g~-iIf~~s~~~ie~la~~L~~~---------g 344 (677)
T 3rc3_A 289 YTTGEEVEVRDYKRLTPI--SVLDHALE--------S----LDNLRPGD-CIVCFSKNDIYSVSRQIEIR---------G 344 (677)
T ss_dssp HHHTCCEEEEECCCSSCE--EECSSCCC--------S----GGGCCTTE-EEECSSHHHHHHHHHHHHHT---------T
T ss_pred HhcCCceEEEEeeecchH--HHHHHHHH--------H----HHhcCCCC-EEEEcCHHHHHHHHHHHHhc---------C
Confidence 333222111111111111 11111000 0 01123444 67788899999999999874 6
Q ss_pred eEEEEecCCCCHHHHhhhcCCCCC--CCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceee
Q 008221 313 VKVVPLYSTLPPAMQQKIFEPAPP--PSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVS 390 (573)
Q Consensus 313 ~~v~~lh~~l~~~~r~~~~~~~~~--g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~ 390 (573)
+.+.++||+|++++|.++.+.|.+ |. ++||||||++|+|||| +|++|||+|+.|. .||+..+. . ..
T Consensus 345 ~~v~~lHG~L~~~~R~~~~~~F~~~~g~-------~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~-~--~~ 412 (677)
T 3rc3_A 345 LESAVIYGSLPPGTKLAQAKKFNDPNDP-------CKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER-E--LE 412 (677)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHCTTSS-------CCEEEECGGGGSSCCC-CBSEEEESCSBC---------------C
T ss_pred CCeeeeeccCCHHHHHHHHHHHHccCCC-------eEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc-c--cc
Confidence 789999999999999999998887 66 8999999999999999 8999999999888 88887443 2 55
Q ss_pred eccHhhHHHhccccCCCC----CCeEEeccchh--hhhhhcCCCChhhhhccCchhHHHHHHHcC
Q 008221 391 PISKASAHQRSGRAGRTQ----PGKCFRLYTEK--SFNNDLQPQTYPEILRSNLANTVLTLKKLG 449 (573)
Q Consensus 391 p~s~~~~~qR~GRaGR~~----~G~~~~l~t~~--~~~~~~~~~~~pei~r~~l~~~~L~~k~~~ 449 (573)
|+|.++|.||+|||||.+ +|.||++++++ .+ ..+.....|+|.+.++....++++.++
T Consensus 413 p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~-~~~~~~~~~~i~~~~l~p~~~~l~~~~ 476 (677)
T 3rc3_A 413 PITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLL-KEILKRPVDPIRAAGLHPTAEQIEMFA 476 (677)
T ss_dssp BCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHH-HHHHHSCCCCCCCEEECCCHHHHHHHH
T ss_pred cCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHH-HHHHhcCcchhhhccCCChHHHHHHHh
Confidence 999999999999999995 58999999876 44 456667788999988887777777665
No 33
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.98 E-value=2e-32 Score=300.69 Aligned_cols=330 Identities=16% Similarity=0.172 Sum_probs=194.1
Q ss_pred CCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhhc
Q 008221 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (573)
Q Consensus 65 lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (573)
..++++|.++++.+..|+++++.+|||||||.++..+++....... ....+.++++|+.++..+.......+....+..
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 5689999999999999999999999999999988766654322110 112334566666666666555555555544555
Q ss_pred ccchhceeeeeccc--ccccccccccCHHHHHHHHhcccc--cCCCcEEEEeCCCcCcccHHHHHHHHHHHHHh------
Q 008221 144 IGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHERTLATDVLFGLLKEVLKN------ 213 (573)
Q Consensus 144 ~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~------ 213 (573)
++...|........ ......|.++|+|++.+.+....+ +.+++++|+||||.-. ....+..++......
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~-~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTS-KNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCS-TTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccC-CcchHHHHHHHHHHhhhcccc
Confidence 44444432111110 011356888999999998876553 7889999999999632 222334444333332
Q ss_pred CCCcEEEEecccccH----------HH---HHchhCCCCeeeecCc---------ccCCccc--ccC-C-----------
Q 008221 214 RPDLKLVVMSATLEA----------EK---FQGYFYGAPLMKVPGR---------LHPVEIF--YTQ-E----------- 257 (573)
Q Consensus 214 ~~~~~iil~SATl~~----------~~---~~~~~~~~~~i~v~g~---------~~~v~~~--y~~-~----------- 257 (573)
.+..+++++|||+.. +. +...+ +.+.+..... ..|.... +.. .
T Consensus 162 ~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
T 3tbk_A 162 DPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAAL-DASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQL 240 (555)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHT-TCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCeEEEEecCcccCccccHHHHHHHHHHHHHhc-CCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHH
Confidence 146799999999832 11 11122 1112211110 0000000 000 0
Q ss_pred --------------------------------------------------------------------------------
Q 008221 258 -------------------------------------------------------------------------------- 257 (573)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (573)
T Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (555)
T 3tbk_A 241 MKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDA 320 (555)
T ss_dssp HHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence
Q ss_pred -----------------------------------------------CchhHHHHHHHHHHHHhhcCCCCCEEEecCcHH
Q 008221 258 -----------------------------------------------PERDYLEAAIRTVVQIHMCEPSGDILVFLTGEE 290 (573)
Q Consensus 258 -----------------------------------------------~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ 290 (573)
....+...+...+.......+.+++|||++++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~ 400 (555)
T 3tbk_A 321 QMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRA 400 (555)
T ss_dssp CHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHH
T ss_pred hHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHH
Confidence 001122222233333333356689999999999
Q ss_pred HHHHHHHHHHHHHhhcC---CCCCCeEEEEecCCCCHHHHhhhcCCCCC-CCCCCCCCCceEEEeecccccccccCCeEE
Q 008221 291 EIEDACRKITKEITNMG---DQVGPVKVVPLYSTLPPAMQQKIFEPAPP-PSKEGGPPGRKIVVSTNIAETSLTIDGIVY 366 (573)
Q Consensus 291 ~i~~~~~~L~~~~~~~~---~~~~~~~v~~lh~~l~~~~r~~~~~~~~~-g~~~~~~~~~kvllaT~iae~gitI~~V~~ 366 (573)
.++.++..|........ ....+.....+||+|++.+|.++++.|+. |. .+|||||+++++|||+|+|++
T Consensus 401 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~-------~~vLvaT~~~~~GlDlp~v~~ 473 (555)
T 3tbk_A 401 LVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGD-------NNILIATSVADEGIDIAECNL 473 (555)
T ss_dssp HHHHHHHHHHHCGGGTTCCEEECCC--------------------------C-------CSEEEECCCTTCCEETTSCSE
T ss_pred HHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCC-------eeEEEEcchhhcCCccccCCE
Confidence 99999999986421000 00113445667789999999999999998 87 899999999999999999999
Q ss_pred EEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhh
Q 008221 367 VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN 422 (573)
Q Consensus 367 VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~ 422 (573)
||++++ |-|..+|+||+|| ||.++|.||.|+++.+.+
T Consensus 474 VI~~d~------------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 474 VILYEY------------------VGNVIKMIQTRGR-GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp EEEESC------------------CSSCCCEECSSCC-CTTTSCEEEEEESCHHHH
T ss_pred EEEeCC------------------CCCHHHHHHhcCc-CcCCCceEEEEEcCCCHH
Confidence 999998 9999999999999 999999999999987663
No 34
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.97 E-value=1.9e-32 Score=304.81 Aligned_cols=306 Identities=20% Similarity=0.223 Sum_probs=208.6
Q ss_pred HHhcCC-----CChHHHH-----HHHHHHh------cCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEec
Q 008221 60 EKRKSL-----PVWQQKE-----EFLQVLK------ANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (573)
Q Consensus 60 ~~~~~l-----p~~~~q~-----~~i~~i~------~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (573)
...++. .++++|+ +.|+.+. +|++++++|+||||||+++..+++.... . ...+.++++|
T Consensus 204 ~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~-~--~~~~~lilaP-- 278 (673)
T 2wv9_A 204 YGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAI-Q--KRLRTAVLAP-- 278 (673)
T ss_dssp EEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHH-H--TTCCEEEEES--
T ss_pred eeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-h--CCCcEEEEcc--
Confidence 345555 6788888 8888877 8999999999999999997665554321 1 1123444444
Q ss_pred CcccccccHHHHHHHhhhhcccchhceeeee-cccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHH
Q 008221 124 PRRVAAMSVSRRVAEEMDVTIGEEVGYSIRF-EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDV 202 (573)
Q Consensus 124 p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~-~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ 202 (573)
++..+.++.+.+.. . .+++.... .........+..++.|.+.+.++....+.+++++|+||+|+.....+.
T Consensus 279 -Tr~La~Q~~~~l~~---~----~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~ 350 (673)
T 2wv9_A 279 -TRVVAAEMAEALRG---L----PVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIA 350 (673)
T ss_dssp -SHHHHHHHHHHTTT---S----CCEECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHH
T ss_pred -HHHHHHHHHHHHhc---C----CeeeecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHH
Confidence 44433344443321 1 12222111 112223445667788888877777766899999999999985444445
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccHHHHHchh-CCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCC
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF-YGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGD 281 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~~~~~~~~-~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~ 281 (573)
.+..++.+... ++.++++||||+.... ..+. .+.|+..+... +........ +.. +. ...++
T Consensus 351 ~~~~l~~~~~~-~~~~vl~~SAT~~~~i-~~~~~~~~~i~~v~~~-------~~~~~~~~~----l~~---l~--~~~~~ 412 (673)
T 2wv9_A 351 ARGYIATRVEA-GEAAAIFMTATPPGTS-DPFPDTNSPVHDVSSE-------IPDRAWSSG----FEW---IT--DYAGK 412 (673)
T ss_dssp HHHHHHHHHHT-TSCEEEEECSSCTTCC-CSSCCCSSCEEEEECC-------CCSSCCSSC----CHH---HH--SCCSC
T ss_pred HHHHHHHhccc-cCCcEEEEcCCCChhh-hhhcccCCceEEEeee-------cCHHHHHHH----HHH---HH--hCCCC
Confidence 56666666542 4789999999996431 1111 13344433321 100000111 111 11 25679
Q ss_pred EEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccccccc
Q 008221 282 ILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTI 361 (573)
Q Consensus 282 iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI 361 (573)
+|||+|++++++.+++.|... ++.+..+||+ +|.++++.|++|. .+||||||++|+||||
T Consensus 413 ~lVF~~s~~~~e~la~~L~~~---------g~~v~~lHg~----eR~~v~~~F~~g~-------~~VLVaTdv~e~GIDi 472 (673)
T 2wv9_A 413 TVWFVASVKMSNEIAQCLQRA---------GKRVIQLNRK----SYDTEYPKCKNGD-------WDFVITTDISEMGANF 472 (673)
T ss_dssp EEEECSSHHHHHHHHHHHHTT---------TCCEEEECSS----SHHHHGGGGGTCC-------CSEEEECGGGGTTCCC
T ss_pred EEEEECCHHHHHHHHHHHHhC---------CCeEEEeChH----HHHHHHHHHHCCC-------ceEEEECchhhcceee
Confidence 999999999999999999864 6789999993 7889999999998 8999999999999999
Q ss_pred CCeEEEEcCCccccee--ecccCCcccceeeeccHhhHHHhccccCCC--CCCeEEeccc
Q 008221 362 DGIVYVIDPGFAKQKV--YNPRVRVESLLVSPISKASAHQRSGRAGRT--QPGKCFRLYT 417 (573)
Q Consensus 362 ~~V~~VId~g~~k~~~--~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~--~~G~~~~l~t 417 (573)
| |++|||+|....++ ||...++..+...|.|.++|.||+|||||. ++|.||.|+.
T Consensus 473 p-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 473 G-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp C-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred C-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 9 99999999766543 677666666666799999999999999998 6899999975
No 35
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.97 E-value=4.6e-32 Score=289.48 Aligned_cols=289 Identities=20% Similarity=0.211 Sum_probs=187.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeee-c
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRF-E 155 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~-~ 155 (573)
++.+|++++++||||||||+++..+++.... . ...+.++++|++. .+.++++.+. +. .+++.... .
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~-~--~~~~~lil~Ptr~---La~Q~~~~l~---~~----~v~~~~~~~~ 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECA-R--RRLRTLVLAPTRV---VLSEMKEAFH---GL----DVKFHTQAFS 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHH-H--TTCCEEEEESSHH---HHHHHHHHTT---TS----CEEEESSCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHH-h--cCCeEEEEcchHH---HHHHHHHHHh---cC----CeEEecccce
Confidence 4678999999999999999998666554221 0 1123444554444 3333443332 11 11221111 0
Q ss_pred ccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccHHHHHchh
Q 008221 156 DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF 235 (573)
Q Consensus 156 ~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~~~~~~~~ 235 (573)
........+..++.|.+.+.++....+.+++++|+||+|......+..+..+..+... ++.++++||||+.... ..+.
T Consensus 71 ~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~-~~~~~l~~SAT~~~~~-~~~~ 148 (440)
T 1yks_A 71 AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARA-NESATILMTATPPGTS-DEFP 148 (440)
T ss_dssp CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHT-TSCEEEEECSSCTTCC-CSSC
T ss_pred eccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhcc-CCceEEEEeCCCCchh-hhhh
Confidence 1122234445667787777666666689999999999998533444455566665542 4789999999996431 1111
Q ss_pred C-CCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeE
Q 008221 236 Y-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVK 314 (573)
Q Consensus 236 ~-~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~ 314 (573)
. +.++..+.. .+........ +..+ . +..+++|||||++++++.+++.|... ++.
T Consensus 149 ~~~~~~~~~~~-------~~~~~~~~~~----~~~l---~--~~~~~~lVF~~s~~~a~~l~~~L~~~---------~~~ 203 (440)
T 1yks_A 149 HSNGEIEDVQT-------DIPSEPWNTG----HDWI---L--ADKRPTAWFLPSIRAANVMAASLRKA---------GKS 203 (440)
T ss_dssp CCSSCEEEEEC-------CCCSSCCSSS----CHHH---H--HCCSCEEEECSCHHHHHHHHHHHHHT---------TCC
T ss_pred hcCCCeeEeee-------ccChHHHHHH----HHHH---H--hcCCCEEEEeCCHHHHHHHHHHHHHc---------CCC
Confidence 1 222222211 1111111111 1111 1 13578999999999999999999874 678
Q ss_pred EEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceee-cccCCcccceeeecc
Q 008221 315 VVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVY-NPRVRVESLLVSPIS 393 (573)
Q Consensus 315 v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~-d~~~~~~~l~~~p~s 393 (573)
+..+|| ++|.++++.|++|. .+||||||++|+||||| |++|||+|+.+.++| ++..++......|.+
T Consensus 204 v~~lhg----~~R~~~~~~F~~g~-------~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~ 271 (440)
T 1yks_A 204 VVVLNR----KTFEREYPTIKQKK-------PDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRIS 271 (440)
T ss_dssp EEECCS----SSCC--------CC-------CSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECC
T ss_pred EEEecc----hhHHHHHhhhcCCC-------ceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccC
Confidence 999999 46889999999998 89999999999999999 999999999998887 444455556667999
Q ss_pred HhhHHHhccccCCC--CCCeEEeccc
Q 008221 394 KASAHQRSGRAGRT--QPGKCFRLYT 417 (573)
Q Consensus 394 ~~~~~qR~GRaGR~--~~G~~~~l~t 417 (573)
.++|.||+|||||. ++|.||.||+
T Consensus 272 ~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 272 ASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred HHHHHHhccccCCCCCCCceEEEEec
Confidence 99999999999997 5899999984
No 36
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=1.7e-31 Score=305.87 Aligned_cols=334 Identities=13% Similarity=0.128 Sum_probs=177.2
Q ss_pred HhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHh
Q 008221 61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 61 ~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
..++..++++|.++++.+..|+++++.+|||||||.++..+++....... ....+.++++|+.++..+.....+.+...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 34688999999999999999999999999999999988766654322110 01233455666666665555555555544
Q ss_pred hhhcccchhceeeeeccc--ccccccccccCHHHHHHHHhcccc--cCCCcEEEEeCCCcCcccHHHHHHHHHHHHHh--
Q 008221 140 MDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHERTLATDVLFGLLKEVLKN-- 213 (573)
Q Consensus 140 ~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~-- 213 (573)
.+..++...|........ ......|.++|+|++.+.+....+ +.++++||+||||.- .....+..++..+...
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~-~~~~~~~~i~~~~~~~~~ 401 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNT-TGNHPYNVLMTRYLEQKF 401 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGC-STTSHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECcccc-CCCccHHHHHHHHHHHhh
Confidence 455554444433111110 112457889999999988876544 788999999999952 2222344444444432
Q ss_pred ---CCCcEEEEecccccH----------H---HHHchhCCCCeeeecCc---------ccCCccc--cc-----------
Q 008221 214 ---RPDLKLVVMSATLEA----------E---KFQGYFYGAPLMKVPGR---------LHPVEIF--YT----------- 255 (573)
Q Consensus 214 ---~~~~~iil~SATl~~----------~---~~~~~~~~~~~i~v~g~---------~~~v~~~--y~----------- 255 (573)
.+..+++++|||+.. + .+...+.. ..+..... ..|...+ +.
T Consensus 402 ~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~-~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDI-QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp TTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTC-SEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred ccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCC-cEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 456899999999831 1 11122211 11110000 0000000 00
Q ss_pred -------------------------------------------------CCC----------------------------
Q 008221 256 -------------------------------------------------QEP---------------------------- 258 (573)
Q Consensus 256 -------------------------------------------------~~~---------------------------- 258 (573)
...
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 000
Q ss_pred --------------------------------------------------chhHHHHHHHHHHHHhhcCCCCCEEEecCc
Q 008221 259 --------------------------------------------------ERDYLEAAIRTVVQIHMCEPSGDILVFLTG 288 (573)
Q Consensus 259 --------------------------------------------------~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~ 288 (573)
...++..+...+.......+.+++|||+++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 001111122222222223566899999999
Q ss_pred HHHHHHHHHHHHHHHhhcC---CCCCCeEEEEecCCCCHHHHhhhcCCCCC-CCCCCCCCCceEEEeecccccccccCCe
Q 008221 289 EEEIEDACRKITKEITNMG---DQVGPVKVVPLYSTLPPAMQQKIFEPAPP-PSKEGGPPGRKIVVSTNIAETSLTIDGI 364 (573)
Q Consensus 289 ~~~i~~~~~~L~~~~~~~~---~~~~~~~v~~lh~~l~~~~r~~~~~~~~~-g~~~~~~~~~kvllaT~iae~gitI~~V 364 (573)
+..++.+++.|.....-.. ....+.....+||+|++.+|.++++.|+. |. .+|||||+++++|||+|+|
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~-------~~vLVaT~~~~~GIDlp~v 713 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD-------NRLLIATSVADEGIDIVQC 713 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------C-------CSEEEEECC-------CCC
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCC-------ceEEEEcCchhcCCCchhC
Confidence 9999999999975310000 00124456678999999999999999998 87 8999999999999999999
Q ss_pred EEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhh
Q 008221 365 VYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN 422 (573)
Q Consensus 365 ~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~ 422 (573)
++||+|+. |-|..+|+||+|| ||.++|.||+|+++.+.+
T Consensus 714 ~~VI~yd~------------------p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 714 NLVVLYEY------------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (797)
T ss_dssp SEEEEESC------------------CSCHHHHHTC--------CCCEEEEECCHHHH
T ss_pred CEEEEeCC------------------CCCHHHHHHhcCC-CCCCCceEEEEEeCCcHH
Confidence 99999998 9999999999999 999999999999987653
No 37
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-31 Score=307.35 Aligned_cols=322 Identities=16% Similarity=0.193 Sum_probs=216.3
Q ss_pred CCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcc
Q 008221 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (573)
Q Consensus 65 lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (573)
..++++|.++++.+..|+.++++||||||||+.+..+++.... . +..++++.|.+..+.+.++.+....+ .+
T Consensus 85 f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~-~------g~rvL~l~PtkaLa~Q~~~~l~~~~~-~v 156 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-N------KQRVIYTSPIKALSNQKYRELLAEFG-DV 156 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH-T------TCEEEEEESSHHHHHHHHHHHHHHHS-CE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc-c------CCeEEEECChHHHHHHHHHHHHHHhC-CE
Confidence 3589999999999999999999999999999987655543221 1 12344455665555566666665444 33
Q ss_pred cchhceeeeecccccccccccccCHHHHHHHHhccc-ccCCCcEEEEeCCCcCccc--HHHHHHHHHHHHHhCCCcEEEE
Q 008221 145 GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLA--TDVLFGLLKEVLKNRPDLKLVV 221 (573)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lILDEa~~r~~~--~d~ll~~l~~l~~~~~~~~iil 221 (573)
+...|.. ....+..+.++|++++..++.... .+.++++||+||+|. ..+ ....++.+.. ...++.++|+
T Consensus 157 glltGd~-----~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~-l~d~~rg~~~e~il~--~l~~~~~il~ 228 (1010)
T 2xgj_A 157 GLMTGDI-----TINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY-MRDKERGVVWEETII--LLPDKVRYVF 228 (1010)
T ss_dssp EEECSSC-----EECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGG-GGCTTTHHHHHHHHH--HSCTTCEEEE
T ss_pred EEEeCCC-----ccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhh-hcccchhHHHHHHHH--hcCCCCeEEE
Confidence 3333311 112345788999999988776554 488999999999994 222 2233332222 2234789999
Q ss_pred ecccc-cHHHHHchhC-----CCCeeeecCcccCCcccccCCC----------ch-----hHH-----------------
Q 008221 222 MSATL-EAEKFQGYFY-----GAPLMKVPGRLHPVEIFYTQEP----------ER-----DYL----------------- 263 (573)
Q Consensus 222 ~SATl-~~~~~~~~~~-----~~~~i~v~g~~~~v~~~y~~~~----------~~-----~~~----------------- 263 (573)
+|||+ +...+++++. ++.++....+..|+++++.... .. .+.
T Consensus 229 LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 308 (1010)
T 2xgj_A 229 LSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNST 308 (1010)
T ss_dssp EECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----------
T ss_pred EcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccc
Confidence 99999 4556776653 2334444555566655543211 00 000
Q ss_pred -------------------HHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhh------------------c
Q 008221 264 -------------------EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITN------------------M 306 (573)
Q Consensus 264 -------------------~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~------------------~ 306 (573)
...+..+.........+++|||++++..++.++..|...... +
T Consensus 309 ~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 388 (1010)
T 2xgj_A 309 DSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALL 388 (1010)
T ss_dssp --------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTS
T ss_pred ccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhc
Confidence 111122333333345568999999999999999888541000 0
Q ss_pred CCCCC------------CeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCccc
Q 008221 307 GDQVG------------PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAK 374 (573)
Q Consensus 307 ~~~~~------------~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k 374 (573)
..... ...+..+||+|++.+|..+++.|+.|. .+|||||+++++|||+|++++||+.
T Consensus 389 ~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~-------ikVLVAT~~la~GIDiP~~~vVI~~---- 457 (1010)
T 2xgj_A 389 PETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGF-------LKVLFATETFSIGLNMPAKTVVFTS---- 457 (1010)
T ss_dssp CGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTC-------CSEEEEEGGGGGSTTCCBSEEEESC----
T ss_pred chhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCC-------CcEEEEehHhhccCCCCCceEEEeC----
Confidence 00000 012788999999999999999999998 8999999999999999999999983
Q ss_pred ceeecccCCcccceeeeccHhhHHHhccccCCCC---CCeEEeccchh
Q 008221 375 QKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEK 419 (573)
Q Consensus 375 ~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~---~G~~~~l~t~~ 419 (573)
...||... ..|.|..+|.||+|||||.+ .|.||.++++.
T Consensus 458 ~~kfd~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 458 VRKWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp SEEECSSC------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CcccCCcC------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 23455432 23899999999999999995 59999999854
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=2.1e-30 Score=313.01 Aligned_cols=455 Identities=18% Similarity=0.213 Sum_probs=281.5
Q ss_pred hcCCCChHHHHHHHHHH-hcCCEEEEEcCCCCchhhhhhhhhhcCccC----CChhhcCceEEEEecCcccccccHHHHH
Q 008221 62 RKSLPVWQQKEEFLQVL-KANQVIILVGETGSGKTTQIPQFVLEGVDI----ETPDRRRKMMIACTQPRRVAAMSVSRRV 136 (573)
Q Consensus 62 ~~~lp~~~~q~~~i~~i-~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~----~~~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (573)
.++...+++|.++++.+ ..++++++++|||||||..+-..++..... .......+..++..-|.+..+....+.+
T Consensus 75 ~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 75 EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 36778899999999975 568999999999999999776555432210 0000112334555556655555555555
Q ss_pred HHh---hhhcccchhceeeeecccccccccccccCHHHHHHHHhcc----cccCCCcEEEEeCCCcCcccHHHHHH-HHH
Q 008221 137 AEE---MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTD----PLLERYKVIVLDEAHERTLATDVLFG-LLK 208 (573)
Q Consensus 137 ~~~---~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~----~ll~~~~~lILDEa~~r~~~~d~ll~-~l~ 208 (573)
.+. .+..++...|.. ...........|.++|++.+ +.++.. .++.+++++|+||+|.-.-..+..++ ++.
T Consensus 155 ~~~~~~~gi~V~~~tGd~-~~~~~~~~~~~IlVtTpEkl-d~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~ 232 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDH-QLCKEEISATQIIVCTPEKW-DIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVA 232 (1724)
T ss_dssp HHHHTTTTCCEEECCSSC-SSCCTTGGGCSEEEECHHHH-HHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHH
T ss_pred HHHHhhCCCEEEEEECCC-CCCccccCCCCEEEECHHHH-HHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHH
Confidence 443 334444444422 11111223567889999986 444432 34889999999999952112222222 222
Q ss_pred H----HHHhCCCcEEEEecccc-cHHHHHchhCCCC---eeeecCc--ccCCcccccCCCchhH---HHHHHHHHHH-Hh
Q 008221 209 E----VLKNRPDLKLVVMSATL-EAEKFQGYFYGAP---LMKVPGR--LHPVEIFYTQEPERDY---LEAAIRTVVQ-IH 274 (573)
Q Consensus 209 ~----l~~~~~~~~iil~SATl-~~~~~~~~~~~~~---~i~v~g~--~~~v~~~y~~~~~~~~---~~~~~~~l~~-i~ 274 (573)
+ .....++.++|.+|||+ +.+.+++|++..+ ...+... +-|++++|........ .......+.. +.
T Consensus 233 rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 312 (1724)
T 4f92_B 233 RAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIM 312 (1724)
T ss_dssp HHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHH
Confidence 2 22234588999999999 6788999887532 2233333 3344555443322211 1111122222 22
Q ss_pred hcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCC----------------------------CCCeEEEEecCCCCHHH
Q 008221 275 MCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ----------------------------VGPVKVVPLYSTLPPAM 326 (573)
Q Consensus 275 ~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~----------------------------~~~~~v~~lh~~l~~~~ 326 (573)
.....+++|||++++.+++.+++.|.+........ .-...+..+||+|++++
T Consensus 313 ~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~ 392 (1724)
T 4f92_B 313 EHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVD 392 (1724)
T ss_dssp TCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHH
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHH
Confidence 23346789999999999999999887653221000 00123778899999999
Q ss_pred HhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCC
Q 008221 327 QQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGR 406 (573)
Q Consensus 327 r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR 406 (573)
|..+.+.|+.|. .+||+||+.+|.|||+|.+++||.. ..+|||..+. ..|.|..+|.||+|||||
T Consensus 393 R~~vE~~F~~G~-------i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR 457 (1724)
T 4f92_B 393 RTLVEDLFADKH-------IQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGR----WTELGALDILQMLGRAGR 457 (1724)
T ss_dssp HHHHHHHHHTTC-------CCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTE----EEECCHHHHHHHHTTBSC
T ss_pred HHHHHHHHHCCC-------CeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCC----cccCCHHHHHHhhhhccC
Confidence 999999999998 8999999999999999999999953 4678887653 238999999999999999
Q ss_pred CC---CCeEEeccchhhhhh--hcCCCChh-h-hhccCchhHHHHHHHcC-CCccc----------------------cc
Q 008221 407 TQ---PGKCFRLYTEKSFNN--DLQPQTYP-E-ILRSNLANTVLTLKKLG-IDDLV----------------------HF 456 (573)
Q Consensus 407 ~~---~G~~~~l~t~~~~~~--~~~~~~~p-e-i~r~~l~~~~L~~k~~~-~~~~~----------------------~~ 456 (573)
.+ .|.+|.+.++.+... .+-....| | -+...+.+.++.--.+| +.+.. .+
T Consensus 458 ~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~ 537 (1724)
T 4f92_B 458 PQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGI 537 (1724)
T ss_dssp TTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTC
T ss_pred CCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhcc
Confidence 83 799999887655322 11111111 0 01112222222211111 11100 00
Q ss_pred --------cCCCCCcHHHHHHHHHHHHHcCCcc--C-CC--CcChhhhhhhcCCCChhhhhhhhhCCCCCCH-HHHHHHH
Q 008221 457 --------DFMDPPAPETLMRALEVLNYLGALD--D-DG--NLTEMGEKMSEFPLDPQMSKMLVESPKYNCS-NEILSIS 522 (573)
Q Consensus 457 --------~~~~pP~~~~~~~a~~~L~~lgald--~-~~--~lT~lG~~~~~lp~~p~~~~~l~~~~~~~c~-~~~~~i~ 522 (573)
+.++....+.+..|+..|.+.|+|. + +| ..|++|+.+++++++|...+.+.......|. .+++.+.
T Consensus 538 ~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~i 617 (1724)
T 4f92_B 538 SHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVF 617 (1724)
T ss_dssp CHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 1111122345788999999999994 2 23 4799999999999999999999887766654 4556555
Q ss_pred HhhcC-CCcccC
Q 008221 523 AMLSV-PNCFVR 533 (573)
Q Consensus 523 a~l~~-~~~f~~ 533 (573)
|+.+. .++..+
T Consensus 618 s~s~ef~~i~~R 629 (1724)
T 4f92_B 618 SLSSEFKNITVR 629 (1724)
T ss_dssp HTCGGGTTCCCC
T ss_pred hCChhhccCCcC
Confidence 54332 344443
No 39
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.97 E-value=8.6e-31 Score=279.02 Aligned_cols=285 Identities=18% Similarity=0.221 Sum_probs=191.5
Q ss_pred cCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeee-cccc
Q 008221 80 ANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRF-EDCS 158 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~-~~~~ 158 (573)
+|++++++||||||||+.+..++++... . ...+.++++|++.+ +.++.+.+. +. .+++.... ....
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~-~--~g~~~lvl~Pt~~L---a~Q~~~~~~---~~----~v~~~~~~~~~~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAV-K--KRLRTVILAPTRVV---ASEMYEALR---GE----PIRYMTPAVQSER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHH-H--TTCCEEEEESSHHH---HHHHHHHTT---TS----CEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH-h--CCCCEEEECcHHHH---HHHHHHHhC---CC----eEEEEecCccccC
Confidence 4789999999999999987555442211 1 11234455554443 333333221 22 22222111 1122
Q ss_pred cccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccHHHHHchh-CC
Q 008221 159 SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF-YG 237 (573)
Q Consensus 159 ~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~~~~~~~~-~~ 237 (573)
.....+.+++.|.+.+.++....+.+++++|+||+|......+.....++.+.. .++.++++||||+.... ..+. .+
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~-~~~~~~l~~SAT~~~~~-~~~~~~~ 145 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVS-MGDAGAIFMTATPPGTT-EAFPPSN 145 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-TTSCEEEEEESSCTTCC-CSSCCCS
T ss_pred CCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhh-CCCCcEEEEeCCCCcch-hhhcCCC
Confidence 234556778999998888776669999999999999854444556666766653 34899999999996421 1111 12
Q ss_pred CCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEE
Q 008221 238 APLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVP 317 (573)
Q Consensus 238 ~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~ 317 (573)
.|++.+.+. +....... .... .. +..|++|||+|++.+++.+++.|.+. ++.+..
T Consensus 146 ~~i~~~~~~-------~~~~~~~~----~~~~----l~-~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~v~~ 200 (431)
T 2v6i_A 146 SPIIDEETR-------IPDKAWNS----GYEW----IT-EFDGRTVWFVHSIKQGAEIGTCLQKA---------GKKVLY 200 (431)
T ss_dssp SCCEEEECC-------CCSSCCSS----CCHH----HH-SCSSCEEEECSSHHHHHHHHHHHHHT---------TCCEEE
T ss_pred Cceeecccc-------CCHHHHHH----HHHH----HH-cCCCCEEEEeCCHHHHHHHHHHHHHc---------CCeEEE
Confidence 333333221 10000001 1111 11 23679999999999999999999874 678999
Q ss_pred ecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhH
Q 008221 318 LYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASA 397 (573)
Q Consensus 318 lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~ 397 (573)
+||+ +|.++++.|++|. .+|||||+++|+||||| +.+|||+|..+.++|| ..++......|.+.++|
T Consensus 201 lhg~----~r~~~~~~f~~g~-------~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~ 267 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEK-------WDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASA 267 (431)
T ss_dssp ESTT----THHHHTTHHHHSC-------CSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHH
T ss_pred eCCc----cHHHHHHhhcCCC-------CeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHH
Confidence 9997 5778899999988 89999999999999999 9999999999999998 56666677789999999
Q ss_pred HHhccccCCCC-CCeEEeccc
Q 008221 398 HQRSGRAGRTQ-PGKCFRLYT 417 (573)
Q Consensus 398 ~qR~GRaGR~~-~G~~~~l~t 417 (573)
.||+|||||.+ .+.|+.+|.
T Consensus 268 ~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 268 AQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHHTTSSCCTTCCCCEEEEC
T ss_pred HHhhhccCCCCCCCCeEEEEc
Confidence 99999999994 333444443
No 40
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.97 E-value=1.3e-30 Score=288.65 Aligned_cols=315 Identities=17% Similarity=0.110 Sum_probs=217.8
Q ss_pred HhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 61 ~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
..|+ .++++|...++.+.+|+ +..++||+|||.++..+++.... . .....++.|+++++.+.......+...+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL-~---g~~vlVltptreLA~qd~e~~~~l~~~l 151 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL-T---GKGVHVVTVNEYLASRDAEQMGKIFEFL 151 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT-T---SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH-c---CCCEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 4678 89999999999999999 67999999999998887763211 1 1245677777777777767777777777
Q ss_pred hhcccchhceeeeecccccccccccccCHHHH-HHHHhc-------ccccCCCcEEEEeCCCcCcc-cHH----------
Q 008221 141 DVTIGEEVGYSIRFEDCSSARTVLKYLTDGML-LREAMT-------DPLLERYKVIVLDEAHERTL-ATD---------- 201 (573)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l-~r~~~~-------~~ll~~~~~lILDEa~~r~~-~~d---------- 201 (573)
+.+++..+|..............|.+.|+|++ ..++.. ...+.+..++|+||||. ++ +..
T Consensus 152 gl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~-mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 152 GLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDS-ILIDEARTPLIISGQA 230 (844)
T ss_dssp TCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHH-HHTTTTTCEEEEEEEE
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhh-hhhhccccchhhcCCc
Confidence 77777666643211111122457899999999 333322 12378899999999984 22 211
Q ss_pred ----HHHHHHHHHHHhCC----------CcEEE-----------------EecccccH--HHH-----Hchh-C-CCC--
Q 008221 202 ----VLFGLLKEVLKNRP----------DLKLV-----------------VMSATLEA--EKF-----QGYF-Y-GAP-- 239 (573)
Q Consensus 202 ----~ll~~l~~l~~~~~----------~~~ii-----------------l~SATl~~--~~~-----~~~~-~-~~~-- 239 (573)
.+...+..+....+ +.+++ ++|||+.. ..+ +.++ . +..
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 25566666665443 56777 89999742 111 2221 1 000
Q ss_pred -----eeee--------cCcc-----------------------------------------------------------
Q 008221 240 -----LMKV--------PGRL----------------------------------------------------------- 247 (573)
Q Consensus 240 -----~i~v--------~g~~----------------------------------------------------------- 247 (573)
++.| +|+.
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 0000 0000
Q ss_pred --------cCCc----ccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEE
Q 008221 248 --------HPVE----IFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKV 315 (573)
Q Consensus 248 --------~~v~----~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v 315 (573)
.|+. ..+......++..+++..+...+. ...++|||++|++.++.++..|... ++.+
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~--~~~pvLVft~s~~~se~Ls~~L~~~---------gi~~ 459 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYM--TGQPVLVGTVAVETSELISKLLKNK---------GIPH 459 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHHHHHHTT---------TCCC
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHC---------CCCE
Confidence 0000 001111234455555555544433 2457999999999999999999875 7889
Q ss_pred EEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccC--------CeEEEEcCCcccceeecccCCcccc
Q 008221 316 VPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID--------GIVYVIDPGFAKQKVYNPRVRVESL 387 (573)
Q Consensus 316 ~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~--------~V~~VId~g~~k~~~~d~~~~~~~l 387 (573)
..|||++.+.++..+.+.++.| +|+||||+|+||+||+ |+.|||+|++
T Consensus 460 ~vLhg~~~~rEr~ii~~ag~~g---------~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~--------------- 515 (844)
T 1tf5_A 460 QVLNAKNHEREAQIIEEAGQKG---------AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER--------------- 515 (844)
T ss_dssp EEECSSCHHHHHHHHTTTTSTT---------CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC---------------
T ss_pred EEeeCCccHHHHHHHHHcCCCC---------eEEEeCCccccCcCccccchhhhcCCcEEEEecC---------------
Confidence 9999999988887776666543 5999999999999999 8999999999
Q ss_pred eeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 388 LVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 388 ~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
|.|...|+||+|||||. .+|.++.+++.++.
T Consensus 516 ---p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 516 ---HESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp ---CSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred ---CCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 99999999999999999 89999999987663
No 41
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=2.7e-30 Score=277.89 Aligned_cols=316 Identities=16% Similarity=0.166 Sum_probs=206.9
Q ss_pred CCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhh--
Q 008221 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (573)
Q Consensus 65 lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (573)
.+++++|.++++.+..+ .+++.++||+|||+++..++..... . ...+ +++..|++..+.+..+.+.+..+.
T Consensus 8 ~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~-~--~~~~---~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT-K--YGGK---VLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH-H--SCSC---EEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh-c--CCCe---EEEEECCHHHHHHHHHHHHHHhCcch
Confidence 57899999999999999 8889999999999988866654321 0 0112 233335444444455555554332
Q ss_pred -cccchhceeeeecc-cccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEE
Q 008221 143 -TIGEEVGYSIRFED-CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKL 219 (573)
Q Consensus 143 -~~~~~vg~~~~~~~-~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~i 219 (573)
.++...|....... .......+.++|++.+.+.+....+ +.+++++|+||||.- ........+.+.+....+..++
T Consensus 81 ~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~-~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRA-VGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGC-STTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCccc-CCCCcHHHHHHHHHhcCCCCeE
Confidence 22222221110000 0012456889999999988776555 888999999999952 2222333344444444557899
Q ss_pred EEeccccc--HHHHH---chhCCCCeeeecCcccCCcccccCC-------------------------------------
Q 008221 220 VVMSATLE--AEKFQ---GYFYGAPLMKVPGRLHPVEIFYTQE------------------------------------- 257 (573)
Q Consensus 220 il~SATl~--~~~~~---~~~~~~~~i~v~g~~~~v~~~y~~~------------------------------------- 257 (573)
+++|||+. .+.+. +++..............+..++...
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999984 23322 2222111100000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 008221 258 -------------------------------------------------------------------------------- 257 (573)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (573)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence
Q ss_pred --------------------CchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEE
Q 008221 258 --------------------PERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVP 317 (573)
Q Consensus 258 --------------------~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~ 317 (573)
....++..+.+.+.........+++|||+++...++.+++.|... ++.+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~---------~~~~~~ 390 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD---------GIKAKR 390 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT---------TCCEEE
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc---------CCCcEE
Confidence 001112222222222222256789999999999999999999874 678999
Q ss_pred ecC--------CCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCccccee
Q 008221 318 LYS--------TLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV 389 (573)
Q Consensus 318 lh~--------~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~ 389 (573)
+|| +++..+|.++++.|+.|. .+|||||+++++|||+|++++||+++.
T Consensus 391 ~~g~~~~~~~~~~~~~~r~~~~~~F~~~~-------~~vLv~T~~~~~Gldl~~~~~Vi~~d~----------------- 446 (494)
T 1wp9_A 391 FVGQASKENDRGLSQREQKLILDEFARGE-------FNVLVATSVGEEGLDVPEVDLVVFYEP----------------- 446 (494)
T ss_dssp ECCSSCC-------CCHHHHHHHHHHHTS-------CSEEEECGGGGGGGGSTTCCEEEESSC-----------------
T ss_pred EeccccccccccCCHHHHHHHHHHHhcCC-------ceEEEECCccccCCCchhCCEEEEeCC-----------------
Confidence 999 999999999999999887 899999999999999999999999998
Q ss_pred eeccHhhHHHhccccCCCCCCeEEeccchhhhh
Q 008221 390 SPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN 422 (573)
Q Consensus 390 ~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~ 422 (573)
|-+...|.||+||+||.++|.||+|+++...+
T Consensus 447 -~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~e 478 (494)
T 1wp9_A 447 -VPSAIRSIQRRGRTGRHMPGRVIILMAKGTRD 478 (494)
T ss_dssp -CHHHHHHHHHHTTSCSCCCSEEEEEEETTSHH
T ss_pred -CCCHHHHHHHHhhccCCCCceEEEEEecCCHH
Confidence 88999999999999999889999999987664
No 42
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=4.4e-30 Score=297.70 Aligned_cols=334 Identities=13% Similarity=0.161 Sum_probs=176.2
Q ss_pred HhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHh
Q 008221 61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 61 ~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
..++..++++|.++++.+..|+++++.++||||||.++..+++....... ....+.++++|+.++..+.....+.+...
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 44688899999999999999999999999999999998877765543111 01223455556555555555555555444
Q ss_pred hhhcccchhceeeeeccc--ccccccccccCHHHHHHHHhcccc--cCCCcEEEEeCCCcCcccHHHHHHHHHHHHHh--
Q 008221 140 MDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHERTLATDVLFGLLKEVLKN-- 213 (573)
Q Consensus 140 ~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~-- 213 (573)
.+..+....|........ ......+.+.|+|++.+.+....+ +.++++||+||||.- .....+..++..+...
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~-~~~~~~~~i~~~~~~~~~ 401 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNT-TGNHPYNVLMTRYLEQKF 401 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGC-STTCHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECcccc-CCCccHHHHHHHHHHHhh
Confidence 445544444432111111 112456889999999998876554 778999999999952 2222344444444432
Q ss_pred ---CCCcEEEEecccccH----------HH---HHchh-------------------CCCCeee--ecCcc---------
Q 008221 214 ---RPDLKLVVMSATLEA----------EK---FQGYF-------------------YGAPLMK--VPGRL--------- 247 (573)
Q Consensus 214 ---~~~~~iil~SATl~~----------~~---~~~~~-------------------~~~~~i~--v~g~~--------- 247 (573)
.+..+++++|||... +. +...+ ..+.... +..+.
T Consensus 402 ~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~ 481 (936)
T 4a2w_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (936)
T ss_dssp TTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHH
Confidence 346899999999831 11 11111 1111000 00000
Q ss_pred --------------------------cCCccc--cc------------CCC-----------------------------
Q 008221 248 --------------------------HPVEIF--YT------------QEP----------------------------- 258 (573)
Q Consensus 248 --------------------------~~v~~~--y~------------~~~----------------------------- 258 (573)
+..+.+ +. +..
T Consensus 482 ~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~ 561 (936)
T 4a2w_A 482 NLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (936)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 000000 00 000
Q ss_pred -------------------------------------------------chhHHHHHHHHHHHHhhcCCCCCEEEecCcH
Q 008221 259 -------------------------------------------------ERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 289 (573)
Q Consensus 259 -------------------------------------------------~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 289 (573)
...++..+...+.........+++|||++++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~ 641 (936)
T 4a2w_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (936)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCH
Confidence 0001111111111111124568999999999
Q ss_pred HHHHHHHHHHHHHHhh--cC-CCCCCeEEEEecCCCCHHHHhhhcCCCCC-CCCCCCCCCceEEEeecccccccccCCeE
Q 008221 290 EEIEDACRKITKEITN--MG-DQVGPVKVVPLYSTLPPAMQQKIFEPAPP-PSKEGGPPGRKIVVSTNIAETSLTIDGIV 365 (573)
Q Consensus 290 ~~i~~~~~~L~~~~~~--~~-~~~~~~~v~~lh~~l~~~~r~~~~~~~~~-g~~~~~~~~~kvllaT~iae~gitI~~V~ 365 (573)
..++.+++.|.....- +. ....+.....+||+|++.+|.++++.|+. |. .+|||||+++++|||+|+|+
T Consensus 642 ~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~-------~~VLVaT~~~~eGIDlp~v~ 714 (936)
T 4a2w_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD-------NRLLIATSVADEGIDIVQCN 714 (936)
T ss_dssp HHHHHHHHHHHHCSTTSSCCCEEC----------------------------C-------CSEEEEECC------CCCCS
T ss_pred HHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCC-------eeEEEEeCchhcCCcchhCC
Confidence 9999999999863100 00 00114456677999999999999999998 87 89999999999999999999
Q ss_pred EEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhh
Q 008221 366 YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF 421 (573)
Q Consensus 366 ~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~ 421 (573)
+||+||. |-|..+|+||+|| ||.++|.||.|+++.+.
T Consensus 715 ~VI~yD~------------------p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 715 LVVLYEY------------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (936)
T ss_dssp EEEEESC------------------CSCSHHHHCC--------CCCEEEEESCHHH
T ss_pred EEEEeCC------------------CCCHHHHHHhcCC-CCCCCCEEEEEEeCCCH
Confidence 9999998 9999999999999 99999999999998655
No 43
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.96 E-value=1e-30 Score=295.64 Aligned_cols=110 Identities=19% Similarity=0.193 Sum_probs=89.8
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCC--------CCHHHHhhhcCCCCCCCCCCCCCCceEEE
Q 008221 279 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYST--------LPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (573)
Q Consensus 279 ~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~--------l~~~~r~~~~~~~~~g~~~~~~~~~kvll 350 (573)
.+++|||++++..++.+++.|.... .-...++.+..+||+ |++.+|.++++.|+.|. .+|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~---~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~-------~~VLV 469 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENE---KFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGK-------INLLI 469 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSC---SCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC----------CCSE
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCc---cccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCC-------CcEEE
Confidence 6899999999999999999997530 001126889999999 99999999999999998 89999
Q ss_pred eecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccch
Q 008221 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE 418 (573)
Q Consensus 351 aT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~ 418 (573)
||+++++|||+|+|++||++|+ |-|.++|+||+|||||. |.++.++..
T Consensus 470 aT~~~~~GIDip~v~~VI~~d~------------------p~s~~~~~Qr~GRArr~--g~~~~l~~~ 517 (699)
T 4gl2_A 470 ATTVAEEGLDIKECNIVIRYGL------------------VTNEIAMVQARGRARAD--ESTYVLVAH 517 (699)
T ss_dssp EECSCCTTSCCCSCCCCEEESC------------------CCCHHHHHHHHTTSCSS--SCEEEEEEE
T ss_pred EccccccCCccccCCEEEEeCC------------------CCCHHHHHHHcCCCCCC--CceEEEEEe
Confidence 9999999999999999999998 99999999999998764 456666554
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.96 E-value=5e-30 Score=299.76 Aligned_cols=344 Identities=15% Similarity=0.110 Sum_probs=212.2
Q ss_pred cCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHH--hh
Q 008221 63 KSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE--EM 140 (573)
Q Consensus 63 ~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~--~~ 140 (573)
++ .++++|.++++.+.+|++++++||||||||+.+..+++.... ...+.++++|++++. .++++.+.. ..
T Consensus 76 gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~----~~~~~Lil~PtreLa---~Q~~~~l~~l~~~ 147 (1104)
T 4ddu_A 76 GK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLV---KQTLERLQKLADE 147 (1104)
T ss_dssp SS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT----TTCCEEEEESSHHHH---HHHHHHHHTTSCT
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCeEEEEechHHHH---HHHHHHHHHhhCC
Confidence 44 799999999999999999999999999999966554443221 112345555555544 444555544 22
Q ss_pred hhcccchhceeee---e---cccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCccc---HHHHHH------
Q 008221 141 DVTIGEEVGYSIR---F---EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLA---TDVLFG------ 205 (573)
Q Consensus 141 ~~~~~~~vg~~~~---~---~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~---~d~ll~------ 205 (573)
+..++...|.... . ......+..|.+.|+|++.+++.. ..+.++++||+||+|.-... .|.+++
T Consensus 148 ~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~ 226 (1104)
T 4ddu_A 148 KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPE 226 (1104)
T ss_dssp TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCH
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCH
Confidence 2333333332211 0 000112357889999999876653 23789999999999841100 022222
Q ss_pred H-HHHHHHh-C-----------CCcEEEEecccc-cHH---HHHchhCCCCeeeecCcccCCcccccCCCchhHHHHHHH
Q 008221 206 L-LKEVLKN-R-----------PDLKLVVMSATL-EAE---KFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIR 268 (573)
Q Consensus 206 ~-l~~l~~~-~-----------~~~~iil~SATl-~~~---~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~ 268 (573)
. ++.+.+. . ++.+++++|||+ +.. .+...+....+.........+.+.|........ +..
T Consensus 227 ~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~i~~~~~~~~k~~~---L~~ 303 (1104)
T 4ddu_A 227 EIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEK---LVE 303 (1104)
T ss_dssp HHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCCEEEEEESCCCHHH---HHH
T ss_pred HHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCCceeEEEecCHHHH---HHH
Confidence 1 3333321 1 478999999994 321 222222222222112223345666666543332 222
Q ss_pred HHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEE-EecCCCCHHHHhhhcCCCCCCCCCCCCCCce
Q 008221 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV-PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRK 347 (573)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~k 347 (573)
.+.. .++++|||++++..++.++..|... ++.+. .+||. |++ ++.|++|. .+
T Consensus 304 ll~~-----~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~~~~~lhg~-----rr~-l~~F~~G~-------~~ 356 (1104)
T 4ddu_A 304 LLEI-----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF-----EKN-FEDFKVGK-------IN 356 (1104)
T ss_dssp HHHH-----HCSSEEEEESSSHHHHHHHHHHHHT---------TCCEEESSSSH-----HHH-HHHHHHTS-------CS
T ss_pred HHHh-----cCCCEEEEECcHHHHHHHHHHHHhC---------CCCeeeEecCc-----HHH-HHHHHCCC-------CC
Confidence 2222 2378999999999999999999875 67787 99992 455 89999998 89
Q ss_pred EEEe----ecccccccccCC-eEEEEcCCccccee-----ecccCCcccc------------------------------
Q 008221 348 IVVS----TNIAETSLTIDG-IVYVIDPGFAKQKV-----YNPRVRVESL------------------------------ 387 (573)
Q Consensus 348 vlla----T~iae~gitI~~-V~~VId~g~~k~~~-----~d~~~~~~~l------------------------------ 387 (573)
|||| ||++++|||||+ |++|||+|+.+.+. ++|......+
T Consensus 357 VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~ 436 (1104)
T 4ddu_A 357 ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKE 436 (1104)
T ss_dssp EEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHH
T ss_pred EEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 9999 999999999999 99999999977211 2222111111
Q ss_pred -------------------eeeeccHhhHHHhccccCCCC-----CCeEEeccchhhhhhh----c---CCCChhhhhcc
Q 008221 388 -------------------LVSPISKASAHQRSGRAGRTQ-----PGKCFRLYTEKSFNND----L---QPQTYPEILRS 436 (573)
Q Consensus 388 -------------------~~~p~s~~~~~qR~GRaGR~~-----~G~~~~l~t~~~~~~~----~---~~~~~pei~r~ 436 (573)
.....+..+|+||+|||||.. .|.++.+++.....+. + .+....++...
T Consensus 437 ~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~ 516 (1104)
T 4ddu_A 437 FVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEA 516 (1104)
T ss_dssp HHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHHHTCCCEEEGGGC
T ss_pred HHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhhhccccccccccc
Confidence 111227789999999999962 5788988865442221 1 23333344455
Q ss_pred CchhHHHHH
Q 008221 437 NLANTVLTL 445 (573)
Q Consensus 437 ~l~~~~L~~ 445 (573)
+++.+.-.+
T Consensus 517 ~~~~~~~~i 525 (1104)
T 4ddu_A 517 NWKELVHEV 525 (1104)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 666655444
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=7.3e-30 Score=298.39 Aligned_cols=274 Identities=14% Similarity=0.079 Sum_probs=173.7
Q ss_pred HHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHh
Q 008221 60 EKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 60 ~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+..++. + ++|.++++.+.+|++++++||||||||+ +..+++.... . ...+.++++|+++++.|....++.+...
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~-~--~~~~~lil~PtreLa~Q~~~~l~~l~~~ 125 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLA-L--KGKRCYVIFPTSLLVIQAAETIRKYAEK 125 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHH-T--TSCCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHh-h--cCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 346777 6 9999999999999999999999999997 5555443321 1 1234567778877777766666666655
Q ss_pred hhh----cccchhceeeeecc----cccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCccc-HHHHHHHHHHH
Q 008221 140 MDV----TIGEEVGYSIRFED----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLA-TDVLFGLLKEV 210 (573)
Q Consensus 140 ~~~----~~~~~vg~~~~~~~----~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~-~d~ll~~l~~l 210 (573)
.+. .++..+|....... ....+..|.++|+|++.+++.. +.+++++|+||+|. .+. ...+..+++.+
T Consensus 126 ~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~-~l~~~~~~~~i~~~l 201 (1054)
T 1gku_B 126 AGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE---LGHFDFIFVDDVDA-ILKASKNVDKLLHLL 201 (1054)
T ss_dssp TCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT---SCCCSEEEESCHHH-HHTSTHHHHHHHHHT
T ss_pred cCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH---hccCCEEEEeChhh-hhhccccHHHHHHHh
Confidence 554 44444443221110 0011267889999999986554 77999999999996 222 22333333332
Q ss_pred HH--------hCCCcEEEEecccccHH-HHH-chhCCCCeeeecCc---ccCCcccccCCCchhHHHHHHHHHHHHhhcC
Q 008221 211 LK--------NRPDLKLVVMSATLEAE-KFQ-GYFYGAPLMKVPGR---LHPVEIFYTQEPERDYLEAAIRTVVQIHMCE 277 (573)
Q Consensus 211 ~~--------~~~~~~iil~SATl~~~-~~~-~~~~~~~~i~v~g~---~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~ 277 (573)
.- ..++.+++++|||+... .+. .++.+...+.+... ..++.++|......+. +..+...
T Consensus 202 gf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~-------L~~ll~~- 273 (1054)
T 1gku_B 202 GFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESIST-------LSSILEK- 273 (1054)
T ss_dssp TEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTT-------THHHHTT-
T ss_pred CcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEechhHHHH-------HHHHHhh-
Confidence 10 01256789999998542 111 11111111222221 2345555554322222 2222222
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEe----ec
Q 008221 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS----TN 353 (573)
Q Consensus 278 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlla----T~ 353 (573)
.++++||||+++.+++.+++.|.. .+.+..+||++. ++++.|+.|. .+|||| ||
T Consensus 274 ~~~~~LVF~~t~~~a~~l~~~L~~----------~~~v~~lhg~~~-----~~l~~F~~G~-------~~VLVaTas~Td 331 (1054)
T 1gku_B 274 LGTGGIIYARTGEEAEEIYESLKN----------KFRIGIVTATKK-----GDYEKFVEGE-------IDHLIGTAHYYG 331 (1054)
T ss_dssp SCSCEEEEESSHHHHHHHHHTTTT----------SSCEEECTTSSS-----HHHHHHHHTS-------CSEEEEECC---
T ss_pred cCCCEEEEEcCHHHHHHHHHHHhh----------ccCeeEEeccHH-----HHHHHHHcCC-------CcEEEEecCCCC
Confidence 257899999999999999988864 167999999984 5567788887 899999 99
Q ss_pred ccccccccCCe-EEEEcCCcc
Q 008221 354 IAETSLTIDGI-VYVIDPGFA 373 (573)
Q Consensus 354 iae~gitI~~V-~~VId~g~~ 373 (573)
++++|||||+| ++||++|+.
T Consensus 332 v~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 332 TLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp ---CCSCCTTTCCEEEEESCC
T ss_pred eeEeccccCCcccEEEEeCCC
Confidence 99999999995 999999996
No 46
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.96 E-value=5.7e-30 Score=288.34 Aligned_cols=314 Identities=15% Similarity=0.187 Sum_probs=202.3
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHhcC------CEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcc
Q 008221 53 QRYYEILEKRKSLPVWQQKEEFLQVLKAN------QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRR 126 (573)
Q Consensus 53 ~~~~~~l~~~~~lp~~~~q~~~i~~i~~g------~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~ 126 (573)
..+.+.++..++ .++++|.++++.+..+ .+++++|+||||||..+..+++.... ...+.++++|+..+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~----~g~qvlvlaPtr~La 430 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE----AGFQTAFMVPTSILA 430 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH----HTSCEEEECSCHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH----cCCeEEEEeCcHHHH
Confidence 345556677778 8999999999998775 58899999999999998877665322 112344555554444
Q ss_pred cccccHHHHHHHhhhhcccchhceeeeec------ccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccH
Q 008221 127 VAAMSVSRRVAEEMDVTIGEEVGYSIRFE------DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLAT 200 (573)
Q Consensus 127 ~~~~~v~~~v~~~~~~~~~~~vg~~~~~~------~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~ 200 (573)
.+.......+....+..++...|.....+ ........|.+.|++.++. ...+.+++++|+||+|. +..
T Consensus 431 ~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr--~g~ 504 (780)
T 1gm5_A 431 IQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHR--FGV 504 (780)
T ss_dssp HHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCC--C--
T ss_pred HHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccch--hhH
Confidence 44333333333222344443333221100 0111235678889987754 33488999999999996 211
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccHHHHH-chhCCCCeeeec---CcccCCcccccCCCchhHHHHHHHHHHHHhhc
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQ-GYFYGAPLMKVP---GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMC 276 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~~~~~-~~~~~~~~i~v~---g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~ 276 (573)
.. . ..+.....+.++++||||.....+. .+++...+..+. ....++..++......+ .++..+... .
T Consensus 505 ~q-r---~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~---~l~~~i~~~--l 575 (780)
T 1gm5_A 505 KQ-R---EALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVN---EVYEFVRQE--V 575 (780)
T ss_dssp -------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSSTHH---HHHHHHHHH--T
T ss_pred HH-H---HHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccchHH---HHHHHHHHH--H
Confidence 11 0 1111222367899999998665544 334433332222 22346666655443322 223333222 1
Q ss_pred CCCCCEEEecCcHHH--------HHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceE
Q 008221 277 EPSGDILVFLTGEEE--------IEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 348 (573)
Q Consensus 277 ~~~g~iLVFl~~~~~--------i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kv 348 (573)
...++++||||..++ ++.+++.|... ..+++.+..+||+|++++|.++++.|++|. .+|
T Consensus 576 ~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~------~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~-------~~I 642 (780)
T 1gm5_A 576 MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE------VFPEFKLGLMHGRLSQEEKDRVMLEFAEGR-------YDI 642 (780)
T ss_dssp TTSCCBCCBCCCC--------CHHHHHHHSGGGS------CC---CBCCCCSSSCCSCSHHHHHHHTTTS-------SSB
T ss_pred hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhh------hcCCCcEEEEeCCCCHHHHHHHHHHHHCCC-------CeE
Confidence 346789999997655 34444444330 123678999999999999999999999998 899
Q ss_pred EEeecccccccccCCeEEEEcCCcccceeecccCCcccceeee-ccHhhHHHhccccCCC-CCCeEEeccc
Q 008221 349 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP-ISKASAHQRSGRAGRT-QPGKCFRLYT 417 (573)
Q Consensus 349 llaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p-~s~~~~~qR~GRaGR~-~~G~~~~l~t 417 (573)
||||+++|+|||+|++++||+++. | .+.+.+.||+||+||. ++|.||.+++
T Consensus 643 LVaT~vie~GIDiP~v~~VIi~d~------------------~r~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 643 LVSTTVIEVGIDVPRANVMVIENP------------------ERFGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp CCCSSCCCSCSCCTTCCEEEBCSC------------------SSSCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred EEECCCCCccccCCCCCEEEEeCC------------------CCCCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 999999999999999999999876 4 3678899999999998 7999999998
No 47
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.95 E-value=2.8e-28 Score=269.28 Aligned_cols=312 Identities=14% Similarity=0.141 Sum_probs=199.3
Q ss_pred CCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcc
Q 008221 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (573)
Q Consensus 65 lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (573)
..++++|...++.+.+|+ +..++||||||.++..+++.... . ..+..+++||++++.+.......+...++.++
T Consensus 73 ~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l-~---g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v 146 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL-T---GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTV 146 (853)
T ss_dssp CCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT-T---SSCCEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH-c---CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 588999999999999998 77999999999998877763221 1 13467888888888887777888888888777
Q ss_pred cchhceeeeecccccccccccccCHHHH-HHHHhcc-------cccCCCcEEEEeCCCcCcc-cH---------------
Q 008221 145 GEEVGYSIRFEDCSSARTVLKYLTDGML-LREAMTD-------PLLERYKVIVLDEAHERTL-AT--------------- 200 (573)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l-~r~~~~~-------~ll~~~~~lILDEa~~r~~-~~--------------- 200 (573)
+..+|..............|.+.|+|++ .+++... ..+.+..++|+||||. ++ +.
T Consensus 147 ~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~-mLiD~a~tpLIiSg~~~~~~ 225 (853)
T 2fsf_A 147 GINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDS-ILIDEARTPLIISGPAEDSS 225 (853)
T ss_dssp EECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHH-HTTTTTTCEEEEEEC-----
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHH-HHHhcCcccccccCCCccch
Confidence 7666643211111112457889999999 4544322 2368999999999984 22 11
Q ss_pred ---HHHHHHHHHHHHh-----------------CCCcEEE------------------------EecccccH--HHH---
Q 008221 201 ---DVLFGLLKEVLKN-----------------RPDLKLV------------------------VMSATLEA--EKF--- 231 (573)
Q Consensus 201 ---d~ll~~l~~l~~~-----------------~~~~~ii------------------------l~SATl~~--~~~--- 231 (573)
..+..+++.+.+. .++.+++ ++|||... ..+
T Consensus 226 ~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~a 305 (853)
T 2fsf_A 226 EMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAA 305 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHH
Confidence 1122233333210 0133443 88888631 000
Q ss_pred --H--------chhC-CCCee-----------------------------eecCc---ccCCcc-cc-------------
Q 008221 232 --Q--------GYFY-GAPLM-----------------------------KVPGR---LHPVEI-FY------------- 254 (573)
Q Consensus 232 --~--------~~~~-~~~~i-----------------------------~v~g~---~~~v~~-~y------------- 254 (573)
+ +|.- +..++ .+... ...++. .|
T Consensus 306 l~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGT 385 (853)
T 2fsf_A 306 LRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGT 385 (853)
T ss_dssp ---------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECT
T ss_pred HHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCC
Confidence 1 1110 00000 00000 000110 01
Q ss_pred ---------------------------------cCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHH
Q 008221 255 ---------------------------------TQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITK 301 (573)
Q Consensus 255 ---------------------------------~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~ 301 (573)
......++..+++..+...+ ....++|||++|++.++.+++.|.+
T Consensus 386 a~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~--~~gqpvLVft~sie~se~Ls~~L~~ 463 (853)
T 2fsf_A 386 ADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERT--AKGQPVLVGTISIEKSELVSNELTK 463 (853)
T ss_dssp TCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHH
Confidence 11223445555555544433 2445799999999999999999987
Q ss_pred HHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCC------------------
Q 008221 302 EITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDG------------------ 363 (573)
Q Consensus 302 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~------------------ 363 (573)
. ++.+..|||++.+.++..+.+.++.| .|+||||+|+||+||+.
T Consensus 464 ~---------gi~~~vLnak~~~rEa~iia~agr~G---------~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~ 525 (853)
T 2fsf_A 464 A---------GIKHNVLNAKFHANEAAIVAQAGYPA---------AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQ 525 (853)
T ss_dssp T---------TCCCEECCTTCHHHHHHHHHTTTSTT---------CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSH
T ss_pred C---------CCCEEEecCChhHHHHHHHHhcCCCC---------eEEEecccccCCcCccCCCchHhhhhhcccchhHH
Confidence 5 78899999999888888888888765 59999999999999997
Q ss_pred --------------e-----EEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 364 --------------I-----VYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 364 --------------V-----~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
| .|||+|++ |-|...|.||+|||||. .||.++.+++.++.
T Consensus 526 ~~~~~~~~~~~~~~V~~~GGl~VI~te~------------------pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 526 IEKIKADWQVRHDAVLEAGGLHIIGTER------------------HESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHHHHHhhhhhhHHHhcCCcEEEEccC------------------CCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 4 79999999 99999999999999999 89999999887653
No 48
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=7.9e-29 Score=238.36 Aligned_cols=187 Identities=19% Similarity=0.290 Sum_probs=156.9
Q ss_pred CcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhh
Q 008221 250 VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQK 329 (573)
Q Consensus 250 v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 329 (573)
+++.+...+..+++..+.. +.....++++|||++++.+++.+++.|... ++.+.++||++++.+|.+
T Consensus 6 ~~~~~~~~~~~~k~~~l~~----ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~ 72 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSD----LLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERER 72 (212)
T ss_dssp BCCEEEECCTTSHHHHHHH----HHHHHCCSCEEEECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHH
T ss_pred eeeeEEeCCHHHHHHHHHH----HHHhCCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHH
Confidence 3445555555666554443 333446789999999999999999999875 788999999999999999
Q ss_pred hcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-C
Q 008221 330 IFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-Q 408 (573)
Q Consensus 330 ~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~ 408 (573)
+++.|+.|. .+||||||+|++|||||+|++|||+|+ |.|.++|+||+|||||. +
T Consensus 73 ~~~~f~~g~-------~~vlvaT~~~~~Gidi~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~ 127 (212)
T 3eaq_A 73 VLGAFRQGE-------VRVLVATDVAARGLDIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGR 127 (212)
T ss_dssp HHHHHHSSS-------CCEEEECTTTTCSSSCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC-
T ss_pred HHHHHHCCC-------CeEEEecChhhcCCCCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCC
Confidence 999999998 899999999999999999999999999 99999999999999999 6
Q ss_pred CCeEEeccchhhhh-------------hhcCCCChhhhhccCchhHHHHHHHcCCCccccc-----cCCCCCcHHHHHHH
Q 008221 409 PGKCFRLYTEKSFN-------------NDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF-----DFMDPPAPETLMRA 470 (573)
Q Consensus 409 ~G~~~~l~t~~~~~-------------~~~~~~~~pei~r~~l~~~~L~~k~~~~~~~~~~-----~~~~pP~~~~~~~a 470 (573)
+|.||.||++.+.. ..+.....|||.+..+..+++.++.++..+...| +++++|+++.+.+|
T Consensus 128 ~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a 207 (212)
T 3eaq_A 128 GGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAAL 207 (212)
T ss_dssp -BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHH
T ss_pred CCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999988721 3466778899999999999999998876655445 67888999999999
Q ss_pred HHHH
Q 008221 471 LEVL 474 (573)
Q Consensus 471 ~~~L 474 (573)
+..|
T Consensus 208 l~~l 211 (212)
T 3eaq_A 208 LALL 211 (212)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8765
No 49
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=1.3e-28 Score=248.16 Aligned_cols=192 Identities=18% Similarity=0.260 Sum_probs=161.6
Q ss_pred CcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhh
Q 008221 250 VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQK 329 (573)
Q Consensus 250 v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 329 (573)
++++|...+..+++..+...+ ....++++|||++++.+++.+++.|... ++.+.++||+|++.+|.+
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll----~~~~~~~~LVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~l~~~~r~~ 69 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLL----YVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDMSQGERER 69 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHH----HHHCCSSEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSCCCTHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHH----HhcCCCCEEEEECCHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHH
Confidence 567777777777766554433 3334789999999999999999999764 788999999999999999
Q ss_pred hcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-C
Q 008221 330 IFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-Q 408 (573)
Q Consensus 330 ~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~ 408 (573)
+++.|+.|. .+||||||+|++|||||+|++|||+|+ |.|.++|+||+|||||. +
T Consensus 70 ~~~~f~~g~-------~~vLVaT~va~~Gidi~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~ 124 (300)
T 3i32_A 70 VMGAFRQGE-------VRVLVATDVAARGLDIPQVDLVVHYRM------------------PDRAEAYQHRSGRTGRAGR 124 (300)
T ss_dssp HHHHHHHTS-------CCEEEECSTTTCSTTCCCCSEEEESSC------------------CSSTTHHHHHHTCCC----
T ss_pred HHHHhhcCC-------ceEEEEechhhcCccccceeEEEEcCC------------------CCCHHHHHHHccCcCcCCC
Confidence 999999998 899999999999999999999999999 99999999999999999 7
Q ss_pred CCeEEeccchhhhh-------------hhcCCCChhhhhccCchhHHHHHHHcCCCccccc-----cCCCCCcHHHHHHH
Q 008221 409 PGKCFRLYTEKSFN-------------NDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF-----DFMDPPAPETLMRA 470 (573)
Q Consensus 409 ~G~~~~l~t~~~~~-------------~~~~~~~~pei~r~~l~~~~L~~k~~~~~~~~~~-----~~~~pP~~~~~~~a 470 (573)
+|.||.||++.+.. ..+.....|||.+..+..++++++.++..+...| +++++|+++.+.+|
T Consensus 125 ~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaa 204 (300)
T 3i32_A 125 GGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAAL 204 (300)
T ss_dssp -CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHH
T ss_pred CceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHH
Confidence 99999999987721 3467778899999999999999998776655555 56788999999999
Q ss_pred HHHHHHcCC
Q 008221 471 LEVLNYLGA 479 (573)
Q Consensus 471 ~~~L~~lga 479 (573)
+..|.....
T Consensus 205 l~~l~~~~~ 213 (300)
T 3i32_A 205 LALLLGGAP 213 (300)
T ss_dssp HHHHHTCCC
T ss_pred HHHHhcCCc
Confidence 999976654
No 50
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.95 E-value=5.8e-27 Score=259.04 Aligned_cols=314 Identities=15% Similarity=0.085 Sum_probs=215.4
Q ss_pred hcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 62 RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 62 ~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
.|. .++++|...++.+.+|+ +..++||+|||..+..+++.... .. ....++.|++.++.+.......+...++
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL-~g---~~v~VvTpTreLA~Qdae~m~~l~~~lG 180 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL-AG---NGVHIVTVNDYLAKRDSEWMGRVHRFLG 180 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT-TT---SCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH-hC---CCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 455 89999999999999998 77999999999988877653221 11 2356677777777776677777777777
Q ss_pred hcccchhceeeeecccccccccccccCHHHH-HHHHhcc-------cccCCCcEEEEeCCCcCcc-cH------------
Q 008221 142 VTIGEEVGYSIRFEDCSSARTVLKYLTDGML-LREAMTD-------PLLERYKVIVLDEAHERTL-AT------------ 200 (573)
Q Consensus 142 ~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l-~r~~~~~-------~ll~~~~~lILDEa~~r~~-~~------------ 200 (573)
.+++..+|..............|.|.|+|++ .+++... ..+.+..++|+||||. ++ +.
T Consensus 181 Lsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDs-mLiDeartPLiiSg~~~ 259 (922)
T 1nkt_A 181 LQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDS-ILIDEARTPLIISGPAD 259 (922)
T ss_dssp CCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHH-HHTTGGGSCEEEEEECC
T ss_pred CeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHH-HHHhcCccceeecCCCC
Confidence 7777666633211111122457899999999 4444322 2377899999999984 22 11
Q ss_pred --HHHHHHHHHHHHhC----------CCcEEE-----------------EecccccH--HH----H-Hchh-C-------
Q 008221 201 --DVLFGLLKEVLKNR----------PDLKLV-----------------VMSATLEA--EK----F-QGYF-Y------- 236 (573)
Q Consensus 201 --d~ll~~l~~l~~~~----------~~~~ii-----------------l~SATl~~--~~----~-~~~~-~------- 236 (573)
..+...+..+.... ++.+++ ++|||+.. .. + +.++ .
T Consensus 260 ~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV 339 (922)
T 1nkt_A 260 GASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIV 339 (922)
T ss_dssp CCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEE
T ss_pred cchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceee
Confidence 23455555555443 367888 89999741 11 1 2111 1
Q ss_pred -CCCeeeec---Cc-----cc------------------------CCc-ccc----------------------------
Q 008221 237 -GAPLMKVP---GR-----LH------------------------PVE-IFY---------------------------- 254 (573)
Q Consensus 237 -~~~~i~v~---g~-----~~------------------------~v~-~~y---------------------------- 254 (573)
+..++.|. |+ .+ .++ +.|
T Consensus 340 ~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 419 (922)
T 1nkt_A 340 RDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLG 419 (922)
T ss_dssp CSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCE
T ss_pred ecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCC
Confidence 11111111 11 00 011 001
Q ss_pred ------------------cCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEE
Q 008221 255 ------------------TQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV 316 (573)
Q Consensus 255 ------------------~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~ 316 (573)
......++..+++..+...+. ...++|||+++.+.++.+++.|.+. ++.+.
T Consensus 420 vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~--~gqpvLVft~Sie~sE~Ls~~L~~~---------Gi~~~ 488 (922)
T 1nkt_A 420 VVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA--KGQPVLIGTTSVERSEYLSRQFTKR---------RIPHN 488 (922)
T ss_dssp EEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHT---------TCCCE
T ss_pred eEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHC---------CCCEE
Confidence 111223455555555544433 3457999999999999999999875 78899
Q ss_pred EecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCe--------------------------------
Q 008221 317 PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGI-------------------------------- 364 (573)
Q Consensus 317 ~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V-------------------------------- 364 (573)
.|||++.+.++..+.+.++.| .|+||||+|+||+||+.+
T Consensus 489 vLnak~~~rEa~iia~agr~G---------~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (922)
T 1nkt_A 489 VLNAKYHEQEATIIAVAGRRG---------GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSE 559 (922)
T ss_dssp EECSSCHHHHHHHHHTTTSTT---------CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHH
T ss_pred EecCChhHHHHHHHHhcCCCC---------eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHH
Confidence 999999888887777877765 599999999999999975
Q ss_pred --------------------EEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 365 --------------------VYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 365 --------------------~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
.|||+|++ |.|...|.||+|||||. .||.+..+++.++.
T Consensus 560 ~~~~~~~~~~~~~~V~~~GGlhVI~te~------------------pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 560 LPIVKEEASKEAKEVIEAGGLYVLGTER------------------HESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHHTTHHHHHHHHTTSEEEEECSC------------------CSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHHHHHHhhhHHHhcCCcEEEeccC------------------CCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 69999999 99999999999999999 89999999887653
No 51
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.94 E-value=9.3e-27 Score=273.77 Aligned_cols=304 Identities=16% Similarity=0.196 Sum_probs=198.8
Q ss_pred hcCCCChHHHHHHHHHHhc----CC--EEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHH
Q 008221 62 RKSLPVWQQKEEFLQVLKA----NQ--VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRR 135 (573)
Q Consensus 62 ~~~lp~~~~q~~~i~~i~~----g~--~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~ 135 (573)
.++.+ +++|.++++.+.. |+ +++++|+||||||..+..+.+.... . +..+++..|++..+.+.++.
T Consensus 600 f~~~~-t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-~------g~~vlvlvPt~~La~Q~~~~ 671 (1151)
T 2eyq_A 600 FPFET-TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-N------HKQVAVLVPTTLLAQQHYDN 671 (1151)
T ss_dssp CCSCC-CHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-T------TCEEEEECSSHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-h------CCeEEEEechHHHHHHHHHH
Confidence 34544 9999999999876 66 9999999999999876644432211 1 11233334555555555555
Q ss_pred HHHhhh---hcccchhceeeeec------ccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHH
Q 008221 136 VAEEMD---VTIGEEVGYSIRFE------DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGL 206 (573)
Q Consensus 136 v~~~~~---~~~~~~vg~~~~~~------~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~ 206 (573)
+.+... ..++...|.....+ ........|.+.|++.+. ....+.+++++|+||+|. ... .....
T Consensus 672 ~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~~~~~~~l~lvIiDEaH~--~g~-~~~~~ 744 (1151)
T 2eyq_A 672 FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----SDVKFKDLGLLIVDEEHR--FGV-RHKER 744 (1151)
T ss_dssp HHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----SCCCCSSEEEEEEESGGG--SCH-HHHHH
T ss_pred HHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----CCccccccceEEEechHh--cCh-HHHHH
Confidence 554332 22221111110000 001123567788987553 223378899999999997 332 23444
Q ss_pred HHHHHHhCCCcEEEEecccccHHHHHchhCCCC---eeeec-CcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCE
Q 008221 207 LKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAP---LMKVP-GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDI 282 (573)
Q Consensus 207 l~~l~~~~~~~~iil~SATl~~~~~~~~~~~~~---~i~v~-g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~i 282 (573)
++.+. ++.++++||||+....+...+.+.. ++..+ ....++..++.......... .+.... ..++++
T Consensus 745 l~~l~---~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~----~il~~l--~~g~qv 815 (1151)
T 2eyq_A 745 IKAMR---ANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVRE----AILREI--LRGGQV 815 (1151)
T ss_dssp HHHHH---TTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHH----HHHHHH--TTTCEE
T ss_pred HHHhc---CCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHH----HHHHHH--hcCCeE
Confidence 44442 3689999999986544433332221 11111 12234454444333222222 222211 346889
Q ss_pred EEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccC
Q 008221 283 LVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID 362 (573)
Q Consensus 283 LVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~ 362 (573)
+||+++..+++.+++.|.+. .+++.+..+||+|++.+|.++++.|.+|. .+|||||+++|+|||||
T Consensus 816 lvf~~~v~~~~~l~~~L~~~-------~p~~~v~~lhg~~~~~eR~~il~~F~~g~-------~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 816 YYLYNDVENIQKAAERLAEL-------VPEARIAIGHGQMRERELERVMNDFHHQR-------FNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp EEECCCSSCHHHHHHHHHHH-------CTTSCEEECCSSCCHHHHHHHHHHHHTTS-------CCEEEESSTTGGGSCCT
T ss_pred EEEECCHHHHHHHHHHHHHh-------CCCCeEEEEeCCCCHHHHHHHHHHHHcCC-------CcEEEECCcceeeeccc
Confidence 99999999999999999875 23678999999999999999999999988 89999999999999999
Q ss_pred CeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhh
Q 008221 363 GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (573)
Q Consensus 363 ~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~ 420 (573)
++++||..+.. +-+.++|.||+||+||. ++|.||.++++..
T Consensus 882 ~v~~VIi~~~~-----------------~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 882 TANTIIIERAD-----------------HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TEEEEEETTTT-----------------SSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CCcEEEEeCCC-----------------CCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99999965430 23567899999999998 7899999988643
No 52
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.93 E-value=3.4e-26 Score=246.75 Aligned_cols=293 Identities=17% Similarity=0.141 Sum_probs=189.7
Q ss_pred CCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhc-
Q 008221 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT- 143 (573)
Q Consensus 65 lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~- 143 (573)
..++++|.++++.+.++..+++.++||||||.++..++.... .+.++++|+.. .+.+..+.+.. .+..
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~-------~~~Lvl~P~~~---L~~Q~~~~~~~-~~~~~ 160 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELS-------TPTLIVVPTLA---LAEQWKERLGI-FGEEY 160 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHC-------SCEEEEESSHH---HHHHHHHHGGG-GCGGG
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcC-------CCEEEEECCHH---HHHHHHHHHHh-CCCcc
Confidence 578999999999999999999999999999998876655321 12344444333 33334444444 3332
Q ss_pred ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEec
Q 008221 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (573)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~S 223 (573)
++...| .......|.+.|++.+..... .+..++++||+||+|. +....+. .+....+..+++++|
T Consensus 161 v~~~~g-------~~~~~~~Ivv~T~~~l~~~~~--~~~~~~~liIvDEaH~--~~~~~~~----~~~~~~~~~~~l~lS 225 (472)
T 2fwr_A 161 VGEFSG-------RIKELKPLTVSTYDSAYVNAE--KLGNRFMLLIFDEVHH--LPAESYV----QIAQMSIAPFRLGLT 225 (472)
T ss_dssp EEEBSS-------SCBCCCSEEEEEHHHHHHTHH--HHTTTCSEEEEETGGG--TTSTTTH----HHHHTCCCSEEEEEE
T ss_pred eEEECC-------CcCCcCCEEEEEcHHHHHHHH--HhcCCCCEEEEECCcC--CCChHHH----HHHHhcCCCeEEEEe
Confidence 222222 122245688899998766442 2345799999999995 2222222 233344577899999
Q ss_pred ccccH-----HHHHchhC----------------CCCe---eeecCc---------------------------ccCCcc
Q 008221 224 ATLEA-----EKFQGYFY----------------GAPL---MKVPGR---------------------------LHPVEI 252 (573)
Q Consensus 224 ATl~~-----~~~~~~~~----------------~~~~---i~v~g~---------------------------~~~v~~ 252 (573)
||+.. ..+..+++ ..+. +.++-. ...+..
T Consensus 226 ATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (472)
T 2fwr_A 226 ATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNK 305 (472)
T ss_dssp SCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTT
T ss_pred cCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHH
Confidence 99851 01111111 1111 111000 000011
Q ss_pred cccCC---Cc-hh------H-------HHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEE
Q 008221 253 FYTQE---PE-RD------Y-------LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKV 315 (573)
Q Consensus 253 ~y~~~---~~-~~------~-------~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v 315 (573)
++... +. .. . .......+..+......+++|||+++...++.+++.|. +
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------------~ 371 (472)
T 2fwr_A 306 IVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------------I 371 (472)
T ss_dssp TTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------------C
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------------c
Confidence 11000 00 00 0 00112233333344567899999999999998887762 3
Q ss_pred EEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHh
Q 008221 316 VPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKA 395 (573)
Q Consensus 316 ~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~ 395 (573)
..+||+++..+|+++++.|++|. .+|||||+++++|+|+|++++||+++. |.|..
T Consensus 372 ~~~~g~~~~~~R~~~~~~F~~g~-------~~vLv~T~~~~~Gldlp~~~~Vi~~~~------------------~~s~~ 426 (472)
T 2fwr_A 372 PAITHRTSREEREEILEGFRTGR-------FRAIVSSQVLDEGIDVPDANVGVIMSG------------------SGSAR 426 (472)
T ss_dssp CBCCSSSCSHHHHTHHHHHHHSS-------CSBCBCSSCCCSSSCSCCBSEEEEECC------------------SSCCH
T ss_pred ceeeCCCCHHHHHHHHHHHhCCC-------CCEEEEcCchhcCcccccCcEEEEECC------------------CCCHH
Confidence 46899999999999999999888 899999999999999999999999887 88999
Q ss_pred hHHHhccccCCCCCC----eEEeccchhhhh
Q 008221 396 SAHQRSGRAGRTQPG----KCFRLYTEKSFN 422 (573)
Q Consensus 396 ~~~qR~GRaGR~~~G----~~~~l~t~~~~~ 422 (573)
.|.||+||+||.++| .+|.|+++...+
T Consensus 427 ~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~e 457 (472)
T 2fwr_A 427 EYIQRLGRILRPSKGKKEAVLYELISRGTGE 457 (472)
T ss_dssp HHHHHHHHSBCCCTTTCCEEEEEEEECSCC-
T ss_pred HHHHHHhhccCCCCCCceEEEEEEEeCCCch
Confidence 999999999999766 677888866553
No 53
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.92 E-value=1.7e-26 Score=251.63 Aligned_cols=303 Identities=12% Similarity=0.098 Sum_probs=187.2
Q ss_pred CCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhh---
Q 008221 64 SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM--- 140 (573)
Q Consensus 64 ~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--- 140 (573)
...++++|.++++.+..+..+++.|+||||||..+..++..... . ...+.++++|+.. .+.+..+.+....
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~-~--~~~~vlvl~P~~~---L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-N--YEGKILIIVPTTA---LTTQMADDFVDYRLFS 184 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHH-H--CSSEEEEEESSHH---HHHHHHHHHHHTTSSC
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHh-C--CCCeEEEEECcHH---HHHHHHHHHHHhhcCC
Confidence 44789999999999999999999999999999988755543221 0 0012344444433 3334444443321
Q ss_pred hhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEE
Q 008221 141 DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLV 220 (573)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~ii 220 (573)
+..+....|....... ......|.++|++.+.+. ....+.++++||+||+|. .....+..+++.+ .+..+++
T Consensus 185 ~~~v~~~~~~~~~~~~-~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~--~~~~~~~~il~~~---~~~~~~l 256 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK-YKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHL--ATGKSISSIISGL---NNCMFKF 256 (510)
T ss_dssp GGGEEECGGGCCTTGG-GCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGG--CCHHHHHHHGGGC---TTCCEEE
T ss_pred ccceEEEecCCccccc-cccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcC--CCcccHHHHHHhc---ccCcEEE
Confidence 1122222221110000 113467888899965432 123578899999999996 3333333332222 2467999
Q ss_pred EecccccHH-----HHHchhCCCCeeeecC-------cccCCccc--ccCCC-----------ch----------hHHHH
Q 008221 221 VMSATLEAE-----KFQGYFYGAPLMKVPG-------RLHPVEIF--YTQEP-----------ER----------DYLEA 265 (573)
Q Consensus 221 l~SATl~~~-----~~~~~~~~~~~i~v~g-------~~~~v~~~--y~~~~-----------~~----------~~~~~ 265 (573)
++|||+... .+..+++. .+..++. ...+.... ....+ .. .....
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFGE-IFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKW 335 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHCS-EECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhCC-eEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHH
Confidence 999999432 12233332 2211111 11111100 00000 00 11111
Q ss_pred HHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCC
Q 008221 266 AIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPG 345 (573)
Q Consensus 266 ~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~ 345 (573)
....+..... .....++||++ ..+++.+++.|.+. +..+..+||++++.+|.++++.|.+|.
T Consensus 336 l~~~l~~~~~-~~~~~~ivf~~-~~~~~~l~~~L~~~---------~~~v~~~~g~~~~~~r~~i~~~f~~g~------- 397 (510)
T 2oca_A 336 IAKLAIKLAQ-KDENAFVMFKH-VSHGKAIFDLIKNE---------YDKVYYVSGEVDTETRNIMKTLAENGK------- 397 (510)
T ss_dssp HHHHHHHHHT-TTCEEEEEESS-HHHHHHHHHHHHTT---------CSSEEEESSSTTHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHh-cCCCeEEEEec-HHHHHHHHHHHHHc---------CCCeEEEECCCCHHHHHHHHHHHhCCC-------
Confidence 2222222222 23345666666 88888888888753 347899999999999999999999888
Q ss_pred ceEEEee-cccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCC-eEEeccc
Q 008221 346 RKIVVST-NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPG-KCFRLYT 417 (573)
Q Consensus 346 ~kvllaT-~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G-~~~~l~t 417 (573)
.+||||| +++++|+|+|++++||.++. |.|.++|.||+||+||.++| .++.+|+
T Consensus 398 ~~vLv~T~~~~~~GiDip~v~~vi~~~~------------------~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 398 GIIIVASYGVFSTGISVKNLHHVVLAHG------------------VKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SCEEEEEHHHHHHSCCCCSEEEEEESSC------------------CCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCEEEEEcChhhcccccccCcEEEEeCC------------------CCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 8999999 99999999999999999988 88999999999999999544 4777766
No 54
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.92 E-value=1e-24 Score=213.09 Aligned_cols=189 Identities=37% Similarity=0.633 Sum_probs=159.2
Q ss_pred CChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccc
Q 008221 51 YSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAM 130 (573)
Q Consensus 51 l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~ 130 (573)
.++.+.++...+..+|++++|+++++.+.+|++++++|+|||||||++..++++...... ......++++.|.+..+.
T Consensus 46 ~~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~--~~~~~~~l~~~p~~~la~ 123 (235)
T 3llm_A 46 QDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND--RAAECNIVVTQPRRISAV 123 (235)
T ss_dssp HCHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT--CGGGCEEEEEESSHHHHH
T ss_pred cCHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC--CCCceEEEEeccchHHHH
Confidence 345556667778899999999999999999999999999999999999988776543111 122456788889999999
Q ss_pred cHHHHHHHhhhhcccchhceeeeeccccc-ccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHH
Q 008221 131 SVSRRVAEEMDVTIGEEVGYSIRFEDCSS-ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKE 209 (573)
Q Consensus 131 ~v~~~v~~~~~~~~~~~vg~~~~~~~~~~-~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~ 209 (573)
+++++++..++..++..+|+..+++.... ....|.++|+|++++++.. .+.++++||+||+|++..+.++.+..++.
T Consensus 124 q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~ 201 (235)
T 3llm_A 124 SVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRD 201 (235)
T ss_dssp HHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHH
Confidence 99999999888888888888877665443 4567899999999998765 48999999999999888899998889999
Q ss_pred HHHhCCCcEEEEecccccHHHHHchhCCCCeeee
Q 008221 210 VLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKV 243 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~~~~~~~~~~~~~i~v 243 (573)
+....++.++++||||++.+.+++||.++|++.|
T Consensus 202 i~~~~~~~~~il~SAT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 202 VVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp HHHHCTTSEEEEEECSSCCHHHHHHTTSCCCEEC
T ss_pred HHhhCCCCeEEEEecCCCHHHHHHHcCCCCEEeC
Confidence 9888889999999999998889999999998864
No 55
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.92 E-value=4e-25 Score=218.36 Aligned_cols=116 Identities=49% Similarity=0.824 Sum_probs=106.1
Q ss_pred ccccC-CCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhhhcCCCChhhhhhhhhCCCCCCHHHHHHHHHhhcCCCccc
Q 008221 454 VHFDF-MDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFV 532 (573)
Q Consensus 454 ~~~~~-~~pP~~~~~~~a~~~L~~lgald~~~~lT~lG~~~~~lp~~p~~~~~l~~~~~~~c~~~~~~i~a~l~~~~~f~ 532 (573)
..|+| +|||+.+++.+|++.|..+||||++|+||++|+.|++||++|++||||+.|..++|.+++++|||+|+++++|.
T Consensus 6 ~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f~ 85 (270)
T 3i4u_A 6 PEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFY 85 (270)
T ss_dssp --------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCBC
T ss_pred hccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCcccc
Confidence 45788 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHcC
Q 008221 533 RPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNS 569 (573)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~sD~~~~l~~~~~~~~~~ 569 (573)
.|.+.+++++.++..|.+.+|||+|++|+|++|++++
T Consensus 86 ~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~ 122 (270)
T 3i4u_A 86 RPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNK 122 (270)
T ss_dssp CCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999998753
No 56
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.89 E-value=3.7e-23 Score=229.20 Aligned_cols=307 Identities=14% Similarity=0.110 Sum_probs=169.9
Q ss_pred CCChHHHHHHHHHHhc-----CCEEEEEcCCCCchhhhhhhhhh---cCccC-C-ChhhcCceEEEEecCcccccc-cHH
Q 008221 65 LPVWQQKEEFLQVLKA-----NQVIILVGETGSGKTTQIPQFVL---EGVDI-E-TPDRRRKMMIACTQPRRVAAM-SVS 133 (573)
Q Consensus 65 lp~~~~q~~~i~~i~~-----g~~v~i~G~tGSGKTT~l~~~ll---~~~~~-~-~~~~~~~~~i~~t~p~~~~~~-~v~ 133 (573)
..++++|.+.++.+.+ +..++++++||||||.++..++. ..... . .....+.++++|+..+..|.. ...
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3688999999998865 46788999999999987553322 11100 0 001233455666655544433 211
Q ss_pred HHHHHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhc----ccc-cCCCcEEEEeCCCcCcccHHHHHHHHH
Q 008221 134 RRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT----DPL-LERYKVIVLDEAHERTLATDVLFGLLK 208 (573)
Q Consensus 134 ~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~----~~l-l~~~~~lILDEa~~r~~~~d~ll~~l~ 208 (573)
+ ..+ ..++.. ..........|.+.|++.+...... ..+ ..++++||+||||. ....+ ....+
T Consensus 257 ~----~~~----~~~~~~--~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~-~~~~~--~~~~~ 323 (590)
T 3h1t_A 257 T----PFG----DARHKI--EGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHR-GSARD--NSNWR 323 (590)
T ss_dssp T----TTC----SSEEEC--CC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CH
T ss_pred H----hcc----hhhhhh--hccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcc-ccccc--hHHHH
Confidence 1 111 111100 0111223456778898888765421 222 56789999999995 33221 12334
Q ss_pred HHHHhCCCcEEEEecccccH---HHHHchhCCCCeeee-------cCcccCCccc-------------------------
Q 008221 209 EVLKNRPDLKLVVMSATLEA---EKFQGYFYGAPLMKV-------PGRLHPVEIF------------------------- 253 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~---~~~~~~~~~~~~i~v-------~g~~~~v~~~------------------------- 253 (573)
.+....+..+++++|||... .....+|+. ++... .|...|....
T Consensus 324 ~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~-~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFEPAFQIGMTATPLREDNRDTYRYFGN-PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHSTTSEEEEEESSCSCTTTHHHHHHSCS-CSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCCcceEEEeccccccccchhHHHHcCC-ceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 44444456789999999742 234445543 22211 0101110000
Q ss_pred ----ccCCCch------hHHHHHHHHHHHHh-hcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCC
Q 008221 254 ----YTQEPER------DYLEAAIRTVVQIH-MCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTL 322 (573)
Q Consensus 254 ----y~~~~~~------~~~~~~~~~l~~i~-~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l 322 (573)
|...... .........+.... .....+++|||++++..++.+++.|.+......... .-.+..+||++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~~i~g~~ 481 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKH-PDYVARVTSEE 481 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTC-TTSEEECSSTT
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccC-CCeEEEEeCCC
Confidence 0000000 00111222222222 224567899999999999999999987532211111 22367899997
Q ss_pred CHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhcc
Q 008221 323 PPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSG 402 (573)
Q Consensus 323 ~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~G 402 (573)
+. +|+++++.|+++.. ....|++||+++++|||+|++++||.++. |.|...|+||+|
T Consensus 482 ~~-~r~~~l~~F~~~~~----~~~~ilvtt~~l~~GiDip~v~~Vi~~~~------------------~~s~~~~~Q~iG 538 (590)
T 3h1t_A 482 GK-IGKGHLSRFQELET----STPVILTTSQLLTTGVDAPTCKNVVLARV------------------VNSMSEFKQIVG 538 (590)
T ss_dssp HH-HHHHHHHHHHCTTC----CCCCEEEESSTTTTTCCCTTEEEEEEESC------------------CCCHHHHHHHHT
T ss_pred hH-HHHHHHHHHhCCCC----CCCEEEEECChhhcCccchheeEEEEEec------------------CCChHHHHHHHh
Confidence 64 68899999988651 01338999999999999999999999887 899999999999
Q ss_pred ccCCCCC
Q 008221 403 RAGRTQP 409 (573)
Q Consensus 403 RaGR~~~ 409 (573)
|+||.++
T Consensus 539 R~~R~~~ 545 (590)
T 3h1t_A 539 RGTRLRE 545 (590)
T ss_dssp TSCCCBG
T ss_pred hhcccCc
Confidence 9999854
No 57
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.87 E-value=3.7e-22 Score=183.61 Aligned_cols=136 Identities=18% Similarity=0.261 Sum_probs=120.1
Q ss_pred cCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHH
Q 008221 248 HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQ 327 (573)
Q Consensus 248 ~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 327 (573)
..++++|...+..++...+...+. ...++++|||++++..++.+++.|... ++.+..+||+|++.+|
T Consensus 8 ~~i~~~~~~~~~~~K~~~L~~ll~----~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r 74 (163)
T 2hjv_A 8 RNIEHAVIQVREENKFSLLKDVLM----TENPDSCIIFCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQEDR 74 (163)
T ss_dssp CCEEEEEEECCGGGHHHHHHHHHH----HHCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHH
T ss_pred ccceEEEEECChHHHHHHHHHHHH----hcCCCcEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHH
Confidence 457788888777777665554433 235678999999999999999999874 7889999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC
Q 008221 328 QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT 407 (573)
Q Consensus 328 ~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~ 407 (573)
..+++.|+.|. .+|||||+++++|+|+|++++||++++ |.+.++|.||+||+||.
T Consensus 75 ~~~~~~f~~g~-------~~vlv~T~~~~~Gld~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~ 129 (163)
T 2hjv_A 75 FDVMNEFKRGE-------YRYLVATDVAARGIDIENISLVINYDL------------------PLEKESYVHRTGRTGRA 129 (163)
T ss_dssp HHHHHHHHTTS-------CSEEEECGGGTTTCCCSCCSEEEESSC------------------CSSHHHHHHHTTTSSCT
T ss_pred HHHHHHHHcCC-------CeEEEECChhhcCCchhcCCEEEEeCC------------------CCCHHHHHHhccccCcC
Confidence 99999999988 899999999999999999999999998 99999999999999999
Q ss_pred -CCCeEEeccchhhh
Q 008221 408 -QPGKCFRLYTEKSF 421 (573)
Q Consensus 408 -~~G~~~~l~t~~~~ 421 (573)
++|.|+.|+++.+.
T Consensus 130 g~~g~~~~~~~~~~~ 144 (163)
T 2hjv_A 130 GNKGKAISFVTAFEK 144 (163)
T ss_dssp TCCEEEEEEECGGGH
T ss_pred CCCceEEEEecHHHH
Confidence 79999999998765
No 58
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=4.7e-22 Score=185.07 Aligned_cols=136 Identities=15% Similarity=0.278 Sum_probs=115.3
Q ss_pred cCCcccccCCCchh-HHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHH
Q 008221 248 HPVEIFYTQEPERD-YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAM 326 (573)
Q Consensus 248 ~~v~~~y~~~~~~~-~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 326 (573)
..++++|...+..+ +.. .+..+......+++|||++++..++.++..|... ++.+..+||++++.+
T Consensus 6 ~~i~q~~~~~~~~~~K~~----~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~ 72 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQ----ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD---------GHQVSLLSGELTVEQ 72 (175)
T ss_dssp CCEEEEEEECSSHHHHHH----HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECSSCCHHH
T ss_pred CCceEEEEEcCChHhHHH----HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHH
Confidence 35778888776544 544 3444445556789999999999999999999864 678999999999999
Q ss_pred HhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeee------ccHhhHHHh
Q 008221 327 QQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP------ISKASAHQR 400 (573)
Q Consensus 327 r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p------~s~~~~~qR 400 (573)
|..+++.|+.|. .+|||||+++++|+|+|++++||++++ | .+.++|+||
T Consensus 73 R~~~~~~f~~g~-------~~vLvaT~~~~~Gid~~~~~~Vi~~d~------------------p~~~~~~~~~~~~~qr 127 (175)
T 2rb4_A 73 RASIIQRFRDGK-------EKVLITTNVCARGIDVKQVTIVVNFDL------------------PVKQGEEPDYETYLHR 127 (175)
T ss_dssp HHHHHHHHHTTS-------CSEEEECCSCCTTTCCTTEEEEEESSC------------------CC--CCSCCHHHHHHH
T ss_pred HHHHHHHHHcCC-------CeEEEEecchhcCCCcccCCEEEEeCC------------------CCCccccCCHHHHHHH
Confidence 999999999988 899999999999999999999999998 7 899999999
Q ss_pred ccccCCC-CCCeEEeccchhhh
Q 008221 401 SGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 401 ~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
+|||||. ++|.||.|++..+.
T Consensus 128 ~GR~gR~g~~g~~~~~~~~~~~ 149 (175)
T 2rb4_A 128 IGRTGRFGKKGLAFNMIEVDEL 149 (175)
T ss_dssp HCBC----CCEEEEEEECGGGH
T ss_pred hcccccCCCCceEEEEEccchH
Confidence 9999999 79999999998765
No 59
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.86 E-value=4.1e-22 Score=184.94 Aligned_cols=135 Identities=13% Similarity=0.253 Sum_probs=118.7
Q ss_pred cCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHH
Q 008221 248 HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQ 327 (573)
Q Consensus 248 ~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 327 (573)
..++++|...+..++...+... ....+.+++|||++++..++.+++.|... ++.+..+||+|++.+|
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~l----l~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r 70 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDL----LDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEER 70 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHH----HHHSCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHH
T ss_pred CCeEEEEEECChHHHHHHHHHH----HHhCCCCcEEEEECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHHH
Confidence 4578888888777776654443 33346679999999999999999999874 7789999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC
Q 008221 328 QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT 407 (573)
Q Consensus 328 ~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~ 407 (573)
..+++.|+.|. .+|||||+++++|+|+|++++||++++ |.|.++|+||+|||||.
T Consensus 71 ~~~~~~f~~g~-------~~vLvaT~~~~~Gldi~~~~~Vi~~d~------------------p~~~~~~~qr~GR~~R~ 125 (172)
T 1t5i_A 71 LSRYQQFKDFQ-------RRILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRF 125 (172)
T ss_dssp HHHHHHHHTTS-------CSEEEESSCCSTTCCGGGCSEEEESSC------------------CSSHHHHHHHHHHHTGG
T ss_pred HHHHHHHHCCC-------CcEEEECCchhcCcchhhCCEEEEECC------------------CCCHHHHHHHhcccccC
Confidence 99999999988 899999999999999999999999999 99999999999999999
Q ss_pred -CCCeEEeccchhh
Q 008221 408 -QPGKCFRLYTEKS 420 (573)
Q Consensus 408 -~~G~~~~l~t~~~ 420 (573)
++|.|+.|++..+
T Consensus 126 g~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 126 GTKGLAITFVSDEN 139 (172)
T ss_dssp GCCCEEEEEECSHH
T ss_pred CCCcEEEEEEcChh
Confidence 7899999998653
No 60
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.86 E-value=3.8e-22 Score=183.89 Aligned_cols=135 Identities=21% Similarity=0.387 Sum_probs=113.1
Q ss_pred CCcccccCCCchh-HHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHH
Q 008221 249 PVEIFYTQEPERD-YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQ 327 (573)
Q Consensus 249 ~v~~~y~~~~~~~-~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 327 (573)
.++++|...+..+ +...+.. +....+.+++|||++++..++.++..|... ++.+..+||++++.+|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~----ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r 69 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTD----LYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQER 69 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHH----HHHHTTCSCEEEEESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHH
T ss_pred CcEEEEEECCcchhHHHHHHH----HHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHH
Confidence 4667777666555 5554433 333346789999999999999999999874 6789999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC
Q 008221 328 QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT 407 (573)
Q Consensus 328 ~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~ 407 (573)
..+++.|+.|. .+|||||+++++|+|+|++++||++|+ |.+.++|.||+|||||.
T Consensus 70 ~~~~~~f~~g~-------~~vlv~T~~~~~G~d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~gR~ 124 (165)
T 1fuk_A 70 DTIMKEFRSGS-------SRILISTDLLARGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRF 124 (165)
T ss_dssp HHHHHHHHTTS-------CSEEEEEGGGTTTCCCCSCSEEEESSC------------------CSSGGGGGGSSCSCC--
T ss_pred HHHHHHHHcCC-------CEEEEEcChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccC
Confidence 99999999988 899999999999999999999999999 99999999999999999
Q ss_pred -CCCeEEeccchhhh
Q 008221 408 -QPGKCFRLYTEKSF 421 (573)
Q Consensus 408 -~~G~~~~l~t~~~~ 421 (573)
++|.||.++++.+.
T Consensus 125 g~~g~~~~~~~~~~~ 139 (165)
T 1fuk_A 125 GRKGVAINFVTNEDV 139 (165)
T ss_dssp ---CEEEEEEETTTH
T ss_pred CCCceEEEEEcchHH
Confidence 79999999997765
No 61
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.85 E-value=7e-22 Score=186.48 Aligned_cols=147 Identities=15% Similarity=0.157 Sum_probs=114.8
Q ss_pred hhCCCCeeeecC---cccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCC
Q 008221 234 YFYGAPLMKVPG---RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQV 310 (573)
Q Consensus 234 ~~~~~~~i~v~g---~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~ 310 (573)
|+.++..+.+.. ....++++|...+..+++..+... ... .++++|||++++..++.+++.|...
T Consensus 11 ~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~----l~~-~~~~~lVF~~~~~~~~~l~~~L~~~-------- 77 (191)
T 2p6n_A 11 VDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLEC----LQK-TPPPVLIFAEKKADVDAIHEYLLLK-------- 77 (191)
T ss_dssp -----------------CCSEEEEEECCGGGHHHHHHHH----HTT-SCSCEEEECSCHHHHHHHHHHHHHH--------
T ss_pred ccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHH----HHh-CCCCEEEEECCHHHHHHHHHHHHHc--------
Confidence 444444444432 234577888777777766544433 332 3568999999999999999999875
Q ss_pred CCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceee
Q 008221 311 GPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVS 390 (573)
Q Consensus 311 ~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~ 390 (573)
++.+..+||++++.+|.++++.|+.|. .+|||||+++++|+|+|++++||++++
T Consensus 78 -g~~~~~lhg~~~~~~R~~~l~~F~~g~-------~~vLvaT~~~~~Gldi~~v~~VI~~d~------------------ 131 (191)
T 2p6n_A 78 -GVEAVAIHGGKDQEERTKAIEAFREGK-------KDVLVATDVASKGLDFPAIQHVINYDM------------------ 131 (191)
T ss_dssp -TCCEEEECTTSCHHHHHHHHHHHHHTS-------CSEEEECHHHHTTCCCCCCSEEEESSC------------------
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhcCC-------CEEEEEcCchhcCCCcccCCEEEEeCC------------------
Confidence 788999999999999999999999888 899999999999999999999999998
Q ss_pred eccHhhHHHhccccCCC-CCCeEEeccchh
Q 008221 391 PISKASAHQRSGRAGRT-QPGKCFRLYTEK 419 (573)
Q Consensus 391 p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~ 419 (573)
|.+.++|+||+|||||. ++|.|+.|++..
T Consensus 132 p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 132 PEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp CSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred CCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 99999999999999999 799999999865
No 62
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=183.73 Aligned_cols=137 Identities=16% Similarity=0.184 Sum_probs=106.1
Q ss_pred cCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHH
Q 008221 248 HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQ 327 (573)
Q Consensus 248 ~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 327 (573)
..++++|...+..++...+.+.+.. ..+.+++|||++++..++.+++.|... ++.+..+||++++.+|
T Consensus 18 ~~i~q~~~~v~~~~K~~~L~~ll~~---~~~~~k~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 18 ENITQKVVWVEESDKRSFLLDLLNA---TGKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDR 85 (185)
T ss_dssp TTEEEEEEECCGGGHHHHHHHHHHH---C-CCSCEEEEESCHHHHHHHHHHHHHT---------TCCEEEEC--------
T ss_pred CCceEEEEEeCcHHHHHHHHHHHHh---cCCCCeEEEEECCHHHHHHHHHHHHHc---------CCceEEEeCCCCHHHH
Confidence 4577888877777777655554432 225678999999999999999999874 7889999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC
Q 008221 328 QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT 407 (573)
Q Consensus 328 ~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~ 407 (573)
..+++.|+.|. .+|||||+++++|+|+|++++||++++ |.+.++|+||+|||||.
T Consensus 86 ~~~~~~f~~g~-------~~vLvaT~~~~~Gldi~~~~~VI~~d~------------------p~s~~~~~Qr~GR~~R~ 140 (185)
T 2jgn_A 86 EEALHQFRSGK-------SPILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRV 140 (185)
T ss_dssp CHHHHHHHHTS-------SSEEEEEC------CCCSBSEEEESSC------------------CSSHHHHHHHHTTBCCT
T ss_pred HHHHHHHHcCC-------CeEEEEcChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHccccCCC
Confidence 99999999888 899999999999999999999999998 99999999999999999
Q ss_pred -CCCeEEeccchhhh
Q 008221 408 -QPGKCFRLYTEKSF 421 (573)
Q Consensus 408 -~~G~~~~l~t~~~~ 421 (573)
++|.|+.|+++.+.
T Consensus 141 g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 141 GNLGLATSFFNERNI 155 (185)
T ss_dssp TSCEEEEEEECGGGG
T ss_pred CCCcEEEEEEchhhH
Confidence 79999999998765
No 63
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.83 E-value=6.1e-20 Score=199.11 Aligned_cols=165 Identities=18% Similarity=0.211 Sum_probs=124.2
Q ss_pred EEEEeccccc--HHHHHchhCCCCeeeecCccc--CCcc-cccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHH
Q 008221 218 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLH--PVEI-FYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEI 292 (573)
Q Consensus 218 ~iil~SATl~--~~~~~~~~~~~~~i~v~g~~~--~v~~-~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i 292 (573)
++..||+|.. .+.|.+.+ +..++.+|.... .++. ........++..+++..+...+. ...++|||++++..+
T Consensus 411 kL~GMTGTa~te~~Ef~~iY-~l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~--~gqpVLVFt~S~e~s 487 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVY-GMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYK--KGQPVLVGTTSIEKS 487 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHS-CCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH--HTCCEEEEESSHHHH
T ss_pred HHeEECCCCchHHHHHHHHh-CCeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhh--CCCCEEEEECCHHHH
Confidence 7888999985 34565554 466777764321 1111 11123445666666666655543 245799999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccC--------Ce
Q 008221 293 EDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID--------GI 364 (573)
Q Consensus 293 ~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~--------~V 364 (573)
+.+++.|.+. ++.+..|||+..+.++..+...++.| .|+||||+|+||+||+ |+
T Consensus 488 E~Ls~~L~~~---------Gi~~~vLhgkq~~rE~~ii~~ag~~g---------~VtVATdmAgRGtDI~lg~~V~~~Gg 549 (822)
T 3jux_A 488 ELLSSMLKKK---------GIPHQVLNAKYHEKEAEIVAKAGQKG---------MVTIATNMAGRGTDIKLGPGVAELGG 549 (822)
T ss_dssp HHHHHHHHTT---------TCCCEEECSCHHHHHHHHHHHHHSTT---------CEEEEETTTTTTCCCCCCTTTTTTTS
T ss_pred HHHHHHHHHC---------CCCEEEeeCCchHHHHHHHHhCCCCC---------eEEEEcchhhCCcCccCCcchhhcCC
Confidence 9999999875 78889999996666655554445443 5999999999999998 77
Q ss_pred EEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCCeEEeccchhhh
Q 008221 365 VYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (573)
Q Consensus 365 ~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G~~~~l~t~~~~ 421 (573)
.|||++++ |-|...|.||+|||||. .+|.++.+++.++.
T Consensus 550 lhVInte~------------------Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 550 LCIIGTER------------------HESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CEEEESSC------------------CSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred CEEEecCC------------------CCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 89999999 99999999999999999 89999999998763
No 64
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.83 E-value=3.9e-20 Score=214.80 Aligned_cols=122 Identities=12% Similarity=0.125 Sum_probs=102.4
Q ss_pred HHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceE
Q 008221 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 348 (573)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kv 348 (573)
.+..+......+++|||++++..++.++..|... .++.+..+||+|++.+|.++++.|+.|. ...+|
T Consensus 493 ~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--------~g~~~~~lhG~~~~~~R~~~l~~F~~g~-----~~~~v 559 (968)
T 3dmq_A 493 WLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--------EGIRAAVFHEGMSIIERDRAAAWFAEED-----TGAQV 559 (968)
T ss_dssp HHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--------TCCCEEEECTTSCTTHHHHHHHHHHSTT-----SSCEE
T ss_pred HHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--------cCCcEEEEeCCCCHHHHHHHHHHHhCCC-----CcccE
Confidence 3444444456789999999999999999999742 2788999999999999999999998874 12799
Q ss_pred EEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-CCC--eEEeccchhhh
Q 008221 349 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPG--KCFRLYTEKSF 421 (573)
Q Consensus 349 llaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~~G--~~~~l~t~~~~ 421 (573)
||||+++++|||+|++++||+++. |-+.+.|.||+||+||. +.| .+|+++.+...
T Consensus 560 LvaT~v~~~GlDl~~~~~VI~~d~------------------p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ 617 (968)
T 3dmq_A 560 LLCSEIGSEGRNFQFASHMVMFDL------------------PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTA 617 (968)
T ss_dssp EECSCCTTCSSCCTTCCEEECSSC------------------CSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSH
T ss_pred EEecchhhcCCCcccCcEEEEecC------------------CCCHHHHHHHhhccccCCCCceEEEEEecCCChH
Confidence 999999999999999999999998 99999999999999999 555 45666665443
No 65
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.70 E-value=9.7e-22 Score=182.08 Aligned_cols=134 Identities=14% Similarity=0.254 Sum_probs=114.4
Q ss_pred CcccccCCCc-hhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHh
Q 008221 250 VEIFYTQEPE-RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQ 328 (573)
Q Consensus 250 v~~~y~~~~~-~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 328 (573)
++++|...+. .++.. .+..+......+++|||++++..++.+++.|... ++.+..+||++++.+|.
T Consensus 4 i~~~~~~~~~~~~k~~----~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~ 70 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTA----LLVHLLKQPEATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRN 70 (170)
Confidence 4556665554 44443 3333333445678999999999999999999764 78899999999999999
Q ss_pred hhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-
Q 008221 329 KIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT- 407 (573)
Q Consensus 329 ~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~- 407 (573)
.+++.|+.|. .+|||||+++++|+|+|++++||++|+ |.|.++|+||+|||||.
T Consensus 71 ~~~~~f~~g~-------~~vLvaT~~~~~Gid~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g 125 (170)
T 2yjt_D 71 EAIKRLTEGR-------VNVLVATDVAARGIDIPDVSHVFNFDM------------------PRSGDTYLHRIGRTARAG 125 (170)
Confidence 9999999988 899999999999999999999999998 99999999999999999
Q ss_pred CCCeEEeccchhhh
Q 008221 408 QPGKCFRLYTEKSF 421 (573)
Q Consensus 408 ~~G~~~~l~t~~~~ 421 (573)
++|.|+.+++..+.
T Consensus 126 ~~g~~~~~~~~~~~ 139 (170)
T 2yjt_D 126 RKGTAISLVEAHDH 139 (170)
Confidence 79999999998765
No 66
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.79 E-value=8e-19 Score=195.73 Aligned_cols=115 Identities=20% Similarity=0.155 Sum_probs=102.6
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccc
Q 008221 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (573)
Q Consensus 278 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~ 357 (573)
..+++|||++++..++.+++.|... ++.+..+||++++.+|.++++.|+.|. .+|++|||++++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~l~~f~~g~-------~~VLVaT~~l~~ 507 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI---------GIKVNYLHSEIKTLERIEIIRDLRLGK-------YDVLVGINLLRE 507 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHHTS-------CSEEEESCCCST
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc---------CCCeEEEeCCCCHHHHHHHHHHHhcCC-------eEEEEecchhhC
Confidence 4568999999999999999999875 678899999999999999999999888 899999999999
Q ss_pred ccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhh
Q 008221 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF 421 (573)
Q Consensus 358 gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~ 421 (573)
|+|+|+|++||+++..+. +. |.|..+|+||+|||||.++|.|+.++++.+.
T Consensus 508 GlDip~v~lVi~~d~d~~-------G~------p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 508 GLDIPEVSLVAILDADKE-------GF------LRSERSLIQTIGRAARNAEGRVIMYADKITK 558 (661)
T ss_dssp TCCCTTEEEEEETTTTCC-------TT------TTSHHHHHHHHHTTTTSTTCEEEEECSSCCH
T ss_pred CcccCCCCEEEEeCcccc-------cC------CCCHHHHHHHhCcccCCCCCEEEEEEeCCCH
Confidence 999999999999886221 11 7899999999999999999999999987543
No 67
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.78 E-value=1.1e-18 Score=194.70 Aligned_cols=115 Identities=18% Similarity=0.120 Sum_probs=102.6
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccc
Q 008221 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (573)
Q Consensus 278 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~ 357 (573)
..+++|||++++..++.+++.|... ++.+..+||++++.+|.++++.|+.|. .+|++|||++++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~~~~f~~g~-------~~VLvaT~~l~~ 501 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH---------GIRARYLHHELDAFKRQALIRDLRLGH-------YDCLVGINLLRE 501 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHTTS-------CSEEEESCCCCT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc---------CCCceeecCCCCHHHHHHHHHHhhcCC-------ceEEEccChhhc
Confidence 4568999999999999999999875 678899999999999999999999888 899999999999
Q ss_pred ccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhh
Q 008221 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF 421 (573)
Q Consensus 358 gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~ 421 (573)
|+|+|+|++||+++..+. +. |.|..+|+||+|||||.++|.|+.++++.+.
T Consensus 502 GlDip~v~lVI~~d~d~~-------G~------p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 502 GLDIPEVSLVAILDADKE-------GF------LRSERSLIQTIGRAARNARGEVWLYADRVSE 552 (664)
T ss_dssp TCCCTTEEEEEETTTTSC-------SG------GGSHHHHHHHHGGGTTSTTCEEEEECSSCCH
T ss_pred CccCCCCCEEEEeCCccc-------CC------CCCHHHHHHHHCccCcCCCCEEEEEEcCCCH
Confidence 999999999999985222 11 7899999999999999999999999986543
No 68
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.78 E-value=4.8e-19 Score=171.14 Aligned_cols=202 Identities=15% Similarity=0.198 Sum_probs=127.9
Q ss_pred ccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEE
Q 008221 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIAC 121 (573)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~ 121 (573)
...+|+++++++.+.+.+...++..++++|.++++.+.+|+++++.+|||||||..+..+++.... ......+.++++|
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~-~~~~~~~~lil~P 90 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID-TSVKAPQALMLAP 90 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCC-TTCCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHh-ccCCCceEEEEEC
Confidence 356799999999999999999999999999999999999999999999999999987766654332 1111123344444
Q ss_pred ecCcccccccHHHHHHHhhhhcccchhceeeeeccc-ccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCccc
Q 008221 122 TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (573)
Q Consensus 122 t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~ 199 (573)
++.+..+.......+....+..+....|........ ...+..+.++|+|++.+.+..... +.+.+++|+||||. +.
T Consensus 91 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~--~~ 168 (224)
T 1qde_A 91 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE--ML 168 (224)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH--HH
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH--Hh
Confidence 444433333333333333333333333322111111 112357888999999888776554 78899999999995 32
Q ss_pred HHHHHHHHHHHHHh-CCCcEEEEecccccH--HHHH-chhCCCCeeeecCc
Q 008221 200 TDVLFGLLKEVLKN-RPDLKLVVMSATLEA--EKFQ-GYFYGAPLMKVPGR 246 (573)
Q Consensus 200 ~d~ll~~l~~l~~~-~~~~~iil~SATl~~--~~~~-~~~~~~~~i~v~g~ 246 (573)
...+...+..+... .++.+++++|||++. ..+. .++.++..+.+.+.
T Consensus 169 ~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 169 SSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred hhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 22333444444433 347899999999965 3344 55655555555443
No 69
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=179.51 Aligned_cols=199 Identities=18% Similarity=0.160 Sum_probs=136.3
Q ss_pred ccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcC--CEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEE
Q 008221 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN--QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMI 119 (573)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g--~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i 119 (573)
...+|+++++++.+++.+..+++..++++|.++++.+..| ++++++||||||||.++..+++.... ......+.+++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~-~~~~~~~~lil 168 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE-PANKYPQCLCL 168 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCC-TTSCSCCEEEE
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhh-ccCCCceEEEE
Confidence 4578999999999999999999999999999999999987 99999999999999998877775543 11122345666
Q ss_pred EEecCcccccccHHHHHHHhh-hhcccchhceeeeecccccccccccccCHHHHHHHHhccc-c-cCCCcEEEEeCCCcC
Q 008221 120 ACTQPRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP-L-LERYKVIVLDEAHER 196 (573)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~-l-l~~~~~lILDEa~~r 196 (573)
+|++++..+....++.+.... +..+...+|... ..........|.+.|+|++..++.... + +.++++||+||+|.
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~- 246 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK-LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV- 246 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCC-CCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH-
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCcc-HhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH-
Confidence 666666655555555444322 222222232211 111112345688999999999886633 3 88999999999995
Q ss_pred cccHHHHHHHHHHHHHhC-CCcEEEEecccccH--HHHHchhCCCC-eeee
Q 008221 197 TLATDVLFGLLKEVLKNR-PDLKLVVMSATLEA--EKFQGYFYGAP-LMKV 243 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~~-~~~~iil~SATl~~--~~~~~~~~~~~-~i~v 243 (573)
..+...+...+..+.... ++.|+++||||++. ..++..+...| +|.+
T Consensus 247 l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp HHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred HhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEe
Confidence 232234555566655543 37899999999964 45665444444 3443
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.77 E-value=1.2e-18 Score=189.10 Aligned_cols=114 Identities=18% Similarity=0.115 Sum_probs=92.8
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccc
Q 008221 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (573)
Q Consensus 278 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~ 357 (573)
.+.++|||+.....++.+...|.... ++.+..+||++++.+|.++++.|..+.. .+.+|+||+++++
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~~-----~~vil~st~~~~~ 406 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPS-----VKFIVLSVKAGGF 406 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCTT-----CCCCEEECCCC-C
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCCC-----CCEEEEecccccC
Confidence 56689999999999999999997642 5667889999999999999999987731 1348999999999
Q ss_pred ccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC---CCCeEEeccchhhhh
Q 008221 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTEKSFN 422 (573)
Q Consensus 358 gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~---~~G~~~~l~t~~~~~ 422 (573)
|+|++++++||.++. |-+.+.+.||+||++|. ++..+|+|+++...+
T Consensus 407 Glnl~~~~~vi~~d~------------------~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tie 456 (500)
T 1z63_A 407 GINLTSANRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 456 (500)
T ss_dssp CCCCTTCSEEEESSC------------------CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHH
T ss_pred CCchhhCCEEEEeCC------------------CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHH
Confidence 999999999999998 88999999999999998 344578898876553
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.77 E-value=4.9e-18 Score=196.20 Aligned_cols=326 Identities=9% Similarity=0.031 Sum_probs=188.5
Q ss_pred hHHHHHHHHhc-------CCCChHHHHHHHHHHhc--------------CCEEEEEcCCCCchhhhhhhhhhcCccCCCh
Q 008221 53 QRYYEILEKRK-------SLPVWQQKEEFLQVLKA--------------NQVIILVGETGSGKTTQIPQFVLEGVDIETP 111 (573)
Q Consensus 53 ~~~~~~l~~~~-------~lp~~~~q~~~i~~i~~--------------g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~ 111 (573)
..+++++.... ...+.++|.++++.+.+ ++..++..+||||||.++- ++..... ...
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~-~l~~ll~-~~~ 328 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSF-KAARLAT-ELD 328 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHH-HHHHHHT-TCT
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHH-HHHHHHH-hcC
Confidence 44555665432 24588999999988754 3568889999999999763 2221111 111
Q ss_pred hhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeee---ecccccccccccccCHHHHHHHHhcc---cccCCC
Q 008221 112 DRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIR---FEDCSSARTVLKYLTDGMLLREAMTD---PLLERY 185 (573)
Q Consensus 112 ~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~---~~~~~~~~~~i~~lT~G~l~r~~~~~---~ll~~~ 185 (573)
...+.++++|+..+..| ..+.+....... ..+.... ..........|.+.|++.+...+... ..+.+.
T Consensus 329 ~~~rvLvlvpr~eL~~Q---~~~~f~~f~~~~---v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~ 402 (1038)
T 2w00_A 329 FIDKVFFVVDRKDLDYQ---TMKEYQRFSPDS---VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQ 402 (1038)
T ss_dssp TCCEEEEEECGGGCCHH---HHHHHHTTSTTC---SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSC
T ss_pred CCceEEEEeCcHHHHHH---HHHHHHHhcccc---cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccc
Confidence 11223444444444443 333333221111 1111000 00011124568889999998765432 236678
Q ss_pred cEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH-------HHHHchhCCCCeeee-------cCcccCCc
Q 008221 186 KVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-------EKFQGYFYGAPLMKV-------PGRLHPVE 251 (573)
Q Consensus 186 ~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-------~~~~~~~~~~~~i~v-------~g~~~~v~ 251 (573)
.++|+||||. +.... . .+.+....|+.+++.||||... .....+|++. +... .|..-|+.
T Consensus 403 ~lvIiDEAHr-s~~~~-~---~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-i~~Y~l~~AI~dg~l~p~~ 476 (1038)
T 2w00_A 403 VVFIFDECHR-SQFGE-A---QKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRE-LHSYVITDAIRDEKVLKFK 476 (1038)
T ss_dssp EEEEEESCCT-THHHH-H---HHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSE-EEEECHHHHHHHTSSCCEE
T ss_pred cEEEEEccch-hcchH-H---HHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCe-eEeecHHHHHhCCCcCCeE
Confidence 9999999995 43322 2 3344445567899999999842 1233444431 1110 12222332
Q ss_pred ccccCC-------------------------CchhHHHHHHHHHHH-Hhhc-------CCCCCEEEecCcHHHHHHHHHH
Q 008221 252 IFYTQE-------------------------PERDYLEAAIRTVVQ-IHMC-------EPSGDILVFLTGEEEIEDACRK 298 (573)
Q Consensus 252 ~~y~~~-------------------------~~~~~~~~~~~~l~~-i~~~-------~~~g~iLVFl~~~~~i~~~~~~ 298 (573)
+.|... ...+.+...+..++. .... ...++++||++++..+..+++.
T Consensus 477 v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~ 556 (1038)
T 2w00_A 477 VDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYAT 556 (1038)
T ss_dssp EEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHH
T ss_pred EEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHH
Confidence 222210 011122222332322 1111 1235799999999999999999
Q ss_pred HHHHHhhc---CCCCCCeEE-EEecCC----------C----------CHH-----------------------------
Q 008221 299 ITKEITNM---GDQVGPVKV-VPLYST----------L----------PPA----------------------------- 325 (573)
Q Consensus 299 L~~~~~~~---~~~~~~~~v-~~lh~~----------l----------~~~----------------------------- 325 (573)
|.+....+ .....++.+ +.+||+ + ++.
T Consensus 557 l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~ 636 (1038)
T 2w00_A 557 FKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQN 636 (1038)
T ss_dssp HHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHH
T ss_pred HHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhH
Confidence 98764221 011123444 455642 2 221
Q ss_pred HHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccC
Q 008221 326 MQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAG 405 (573)
Q Consensus 326 ~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaG 405 (573)
+|..+.++|+.|. .+|||+||++.||+|+|.+ .|+..+. |.+...|+||+||+|
T Consensus 637 ~R~~i~~~Fk~g~-------i~ILIvvd~lltGfDiP~l-~tlylDk------------------pl~~~~liQaIGRtn 690 (1038)
T 2w00_A 637 YYRDLAQRVKNQD-------IDLLIVVGMFLTGFDAPTL-NTLFVDK------------------NLRYHGLMQAFSRTN 690 (1038)
T ss_dssp HHHHHHHHHHTTS-------SSEEEESSTTSSSCCCTTE-EEEEEES------------------CCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC-------CeEEEEcchHHhCcCcccc-cEEEEcc------------------CCCccceeehhhccC
Confidence 3677788888887 8999999999999999999 6777777 899999999999999
Q ss_pred CCCC-----CeEEeccch
Q 008221 406 RTQP-----GKCFRLYTE 418 (573)
Q Consensus 406 R~~~-----G~~~~l~t~ 418 (573)
|..+ |.++.+.+.
T Consensus 691 R~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 691 RIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp CCCCTTCCSEEEEESSCC
T ss_pred cCCCCCCCcEEEEEcccc
Confidence 9943 667766553
No 72
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.76 E-value=9.6e-19 Score=168.60 Aligned_cols=192 Identities=15% Similarity=0.176 Sum_probs=126.9
Q ss_pred CccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEec
Q 008221 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (573)
.+|+++++++++.+.+.+.++..++++|.++++.+.+|+++++.+|||||||.++..++++... ......+.++++|++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~-~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIK-PERAEVQAVITAPTR 82 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCC-TTSCSCCEEEECSSH
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH-hCcCCceEEEEcCcH
Confidence 4699999999999999999999999999999999999999999999999999988776665432 111112344555554
Q ss_pred CcccccccHHHHHHHhh----hhcccchhceeeeeccc--ccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcC
Q 008221 124 PRRVAAMSVSRRVAEEM----DVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHER 196 (573)
Q Consensus 124 p~~~~~~~v~~~v~~~~----~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r 196 (573)
++..+.....+.+.... +..+....|........ ......+.+.|+|++.+.+....+ +.+.+++|+||||.
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~- 161 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL- 161 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH-
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH-
Confidence 44444433333333322 12222222211111111 112346888999999988766554 78999999999995
Q ss_pred cccHHHHHHHHHHHHHhCC-CcEEEEecccccH--HHHH-chhCCC
Q 008221 197 TLATDVLFGLLKEVLKNRP-DLKLVVMSATLEA--EKFQ-GYFYGA 238 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~~~-~~~iil~SATl~~--~~~~-~~~~~~ 238 (573)
+....+...+..+....+ +.+++++|||++. ..+. .++.++
T Consensus 162 -~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p 206 (219)
T 1q0u_A 162 -MLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENP 206 (219)
T ss_dssp -HHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSC
T ss_pred -HhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCC
Confidence 333334445555555443 7899999999954 3444 455443
No 73
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.76 E-value=1.1e-18 Score=170.35 Aligned_cols=195 Identities=14% Similarity=0.150 Sum_probs=125.2
Q ss_pred cccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEE
Q 008221 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (573)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~ 120 (573)
....+|+++++++++.+.+...++..++++|.++++.+.+|+++++.+|||||||.++..+++.... ......+.++++
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~-~~~~~~~~lil~ 105 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLE-IEFKETQALVLA 105 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCC-TTSCSCCEEEEC
T ss_pred CccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHH-hcCCCceEEEEE
Confidence 3456799999999999999999999999999999999999999999999999999988877665432 111112334444
Q ss_pred EecCcccccccHHHHHHHhhhhcccchhceeeeecc---cccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcC
Q 008221 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED---CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHER 196 (573)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~---~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r 196 (573)
|++.+..+....++.+....+..+...+|....... .......+.+.|+|++.+.+....+ +.+++++|+||||.
T Consensus 106 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~- 184 (237)
T 3bor_A 106 PTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE- 184 (237)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH-
T ss_pred CcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchH-
Confidence 444444443333333333223333333332211111 1111256888999999988776554 78899999999994
Q ss_pred cccHHHHHHHHHHHHHh-CCCcEEEEecccccH--HHHHc-hhCCC
Q 008221 197 TLATDVLFGLLKEVLKN-RPDLKLVVMSATLEA--EKFQG-YFYGA 238 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~-~~~~~iil~SATl~~--~~~~~-~~~~~ 238 (573)
+....+...+..+.+. .++.+++++|||++. ..+.+ ++.++
T Consensus 185 -~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p 229 (237)
T 3bor_A 185 -MLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDP 229 (237)
T ss_dssp -HHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred -hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCC
Confidence 2222233333344333 347899999999964 34444 44443
No 74
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.76 E-value=5.5e-19 Score=173.93 Aligned_cols=198 Identities=19% Similarity=0.155 Sum_probs=130.0
Q ss_pred cccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEE
Q 008221 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (573)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~ 120 (573)
....+|+++++++++.+.++.+++..++++|.++++.+.+|+++++.+|||||||+++..+++.... ......+.++++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~-~~~~~~~~lil~ 118 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL-ETPQRLFALVLT 118 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHH-HSCCSSCEEEEC
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHh-cCCCCceEEEEe
Confidence 4467899999999999999999999999999999999999999999999999999988877664322 111112234444
Q ss_pred EecCcccccccHHHHHHHhhhhcccchhceeeeecc--cccccccccccCHHHHHHHHhccc--ccCCCcEEEEeCCCcC
Q 008221 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDP--LLERYKVIVLDEAHER 196 (573)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~--ll~~~~~lILDEa~~r 196 (573)
|++.+..+.....+.+....+..++..+|....... .......|.++|+|++.+.+.... .+.+++++|+||||.
T Consensus 119 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~- 197 (249)
T 3ber_A 119 PTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR- 197 (249)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHH-
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhh-
Confidence 444444443333344444334433333332111100 011245788999999998876532 378899999999994
Q ss_pred cccHHHHHHHHHHHHHhC-CCcEEEEecccccH--HHHHc-hhCCCCee
Q 008221 197 TLATDVLFGLLKEVLKNR-PDLKLVVMSATLEA--EKFQG-YFYGAPLM 241 (573)
Q Consensus 197 ~~~~d~ll~~l~~l~~~~-~~~~iil~SATl~~--~~~~~-~~~~~~~i 241 (573)
+....+...+..+.... ++.+++++|||++. ..+.+ ++.++..+
T Consensus 198 -l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i 245 (249)
T 3ber_A 198 -ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKC 245 (249)
T ss_dssp -HHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEE
T ss_pred -hhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEE
Confidence 33323444445555443 37899999999964 34444 44443333
No 75
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.76 E-value=1.3e-18 Score=170.37 Aligned_cols=202 Identities=14% Similarity=0.116 Sum_probs=137.2
Q ss_pred ccccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccC----CChhhcC
Q 008221 40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI----ETPDRRR 115 (573)
Q Consensus 40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~----~~~~~~~ 115 (573)
..+..+|+++++++.+.+.+.+.++..++++|.++++.+.+|+++++.+|||||||..+..+++..... ......+
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 104 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI 104 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCS
T ss_pred CCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCE
Confidence 345678999999999999999999999999999999999999999999999999999877665532211 1111233
Q ss_pred ceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeeccc--ccccccccccCHHHHHHHHhcccc-cCCCcEEEEeC
Q 008221 116 KMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDE 192 (573)
Q Consensus 116 ~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDE 192 (573)
.++++|++++..+.....+.+....+..+....|........ ......|.+.|+|++...+..... +.+++++|+||
T Consensus 105 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 184 (242)
T 3fe2_A 105 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDE 184 (242)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETT
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeC
Confidence 456666666665555555555554444443333322111100 011346889999999988876654 88999999999
Q ss_pred CCcCcccHHHHHHHHHHHHHhC-CCcEEEEecccccH--HHHHc-hhCCCCeeee
Q 008221 193 AHERTLATDVLFGLLKEVLKNR-PDLKLVVMSATLEA--EKFQG-YFYGAPLMKV 243 (573)
Q Consensus 193 a~~r~~~~d~ll~~l~~l~~~~-~~~~iil~SATl~~--~~~~~-~~~~~~~i~v 243 (573)
+|. +....+...+..+.... ++.++++||||++. ..+.+ ++.++..+.+
T Consensus 185 ah~--l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~ 237 (242)
T 3fe2_A 185 ADR--MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINI 237 (242)
T ss_dssp HHH--HHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEE
T ss_pred HHH--HhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEe
Confidence 995 33333455555555543 48899999999964 44554 4444434444
No 76
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.75 E-value=1.3e-18 Score=165.68 Aligned_cols=194 Identities=18% Similarity=0.229 Sum_probs=125.8
Q ss_pred CccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEec
Q 008221 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (573)
.+|+++++++++++.+.++++..++++|.++++.+.+|+++++.+|||||||..+..+++..... .....+.++++|+.
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL-KKDNIQAMVIVPTR 81 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT-TSCSCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc-cCCCeeEEEEeCcH
Confidence 46999999999999999999999999999999999999999999999999999877666644321 11112344455544
Q ss_pred CcccccccHHHHHHHhh-hhcccchhceeeeecc--cccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCccc
Q 008221 124 PRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (573)
Q Consensus 124 p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~ 199 (573)
.+..+.......+.... +..+....|....... .......+.+.|+|++...+..... +.+.+++|+||+|. +.
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~--~~ 159 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK--LL 159 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH--HT
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH--hH
Confidence 44433333333332222 2222222221110000 0112356888999999888766554 78999999999995 22
Q ss_pred HHHHHHHHHHHHHhCC-CcEEEEecccccH--HHHHchhCCCCe
Q 008221 200 TDVLFGLLKEVLKNRP-DLKLVVMSATLEA--EKFQGYFYGAPL 240 (573)
Q Consensus 200 ~d~ll~~l~~l~~~~~-~~~iil~SATl~~--~~~~~~~~~~~~ 240 (573)
...+...+..+....+ +.+++++|||++. ..+.+.+.+.|+
T Consensus 160 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~ 203 (206)
T 1vec_A 160 SQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPY 203 (206)
T ss_dssp STTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred hhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCe
Confidence 2334455555555444 7899999999964 344443333443
No 77
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.74 E-value=1.6e-18 Score=168.33 Aligned_cols=198 Identities=15% Similarity=0.138 Sum_probs=126.2
Q ss_pred ccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEE
Q 008221 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIAC 121 (573)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~ 121 (573)
...+|+++++++++.+.+...++..++++|.++++.+.+|+++++.+|||||||.++..+++...... ....+.++++|
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~lil~P 100 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-NLSTQILILAP 100 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-SCSCCEEEECS
T ss_pred CCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-CCCceEEEEeC
Confidence 34579999999999999999999999999999999999999999999999999998776665443211 11123344454
Q ss_pred ecCcccccccHHHHHHHhh-hhcccchhceeee-ecccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcc
Q 008221 122 TQPRRVAAMSVSRRVAEEM-DVTIGEEVGYSIR-FEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTL 198 (573)
Q Consensus 122 t~p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~-~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~ 198 (573)
++++..+.....+.+.... +..+....|.... ..........|.+.|+|++.+.+....+ +.+++++|+||+|. ..
T Consensus 101 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~-~~ 179 (230)
T 2oxc_A 101 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK-LL 179 (230)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH-HH
T ss_pred CHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH-hh
Confidence 4444444333333332211 2222222221100 0000112357888999999988766554 78899999999995 22
Q ss_pred cHHHHHHHHHHHHHhCC-CcEEEEecccccHH--HH-HchhCCCCee
Q 008221 199 ATDVLFGLLKEVLKNRP-DLKLVVMSATLEAE--KF-QGYFYGAPLM 241 (573)
Q Consensus 199 ~~d~ll~~l~~l~~~~~-~~~iil~SATl~~~--~~-~~~~~~~~~i 241 (573)
..+.+...++.+....+ +.+++++|||++.+ .+ ..|+.++..+
T Consensus 180 ~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i 226 (230)
T 2oxc_A 180 EEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFV 226 (230)
T ss_dssp STTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEE
T ss_pred cCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEE
Confidence 22224445555554444 78999999999653 33 3555544333
No 78
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=167.30 Aligned_cols=201 Identities=19% Similarity=0.189 Sum_probs=127.3
Q ss_pred ccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccC---CChhhcCceE
Q 008221 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI---ETPDRRRKMM 118 (573)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~---~~~~~~~~~~ 118 (573)
...+|+++++++++.+.+..+++..++++|.++++.+.+|+++++.+|||||||+++..+++..... ......+.++
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~li 102 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLI 102 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEE
Confidence 4567999999999999999999999999999999999999999999999999999877665543210 1111122344
Q ss_pred EEEecCcccccccHHHHHHHhhhhcccchhceeeeecc-cccccccccccCHHHHHHHHhccc--ccCCCcEEEEeCCCc
Q 008221 119 IACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED-CSSARTVLKYLTDGMLLREAMTDP--LLERYKVIVLDEAHE 195 (573)
Q Consensus 119 i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~-~~~~~~~i~~lT~G~l~r~~~~~~--ll~~~~~lILDEa~~ 195 (573)
++|++.+..+....++.+....+..++...|....... .......+.++|+|++.+.+.... .+.+++++|+||+|.
T Consensus 103 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 182 (236)
T 2pl3_A 103 ISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR 182 (236)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH
Confidence 44444443333333333222222333222332111000 011245788999999988876542 378899999999994
Q ss_pred CcccHHHHHHHHHHHHHhC-CCcEEEEecccccH--HHHHc-hhCCCCeeeec
Q 008221 196 RTLATDVLFGLLKEVLKNR-PDLKLVVMSATLEA--EKFQG-YFYGAPLMKVP 244 (573)
Q Consensus 196 r~~~~d~ll~~l~~l~~~~-~~~~iil~SATl~~--~~~~~-~~~~~~~i~v~ 244 (573)
+....+...+..+.... ++.+++++|||++. ..+++ ++.++..+.+.
T Consensus 183 --~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 183 --ILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp --HHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred --HhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 32222334444554443 37899999999964 34554 44444445443
No 79
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.73 E-value=6.9e-18 Score=162.58 Aligned_cols=194 Identities=15% Similarity=0.141 Sum_probs=125.8
Q ss_pred cCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEe
Q 008221 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (573)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t 122 (573)
..+|+++++++.+.+.+...++..++++|.++++.+.+|+++++.+|||||||..+..+++.... ......+.++++|+
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~-~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE-PVTGQVSVLVMCHT 91 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCC-CCTTCCCEEEECSC
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhh-ccCCCEEEEEEeCC
Confidence 35699999999999999999999999999999999999999999999999999988776665432 11111233444444
Q ss_pred cCcccccccHHHHHHHhh-hhcccchhceeeeecc---cccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCc
Q 008221 123 QPRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFED---CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERT 197 (573)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~---~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~ 197 (573)
+.+..+.....+.+.... +..+....|....... .......+.+.|+|++...+....+ +.+++++|+||+|. .
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~ 170 (220)
T 1t6n_A 92 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK-M 170 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHH-H
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHH-H
Confidence 444433333333332221 2222222221100000 0011236888999999988766554 88999999999995 2
Q ss_pred ccHHHHHHHHHHHHHhCC-CcEEEEecccccH--HHHH-chhCCC
Q 008221 198 LATDVLFGLLKEVLKNRP-DLKLVVMSATLEA--EKFQ-GYFYGA 238 (573)
Q Consensus 198 ~~~d~ll~~l~~l~~~~~-~~~iil~SATl~~--~~~~-~~~~~~ 238 (573)
.....+...+..+....+ +.+++++|||++. +.+. .|+.++
T Consensus 171 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p 215 (220)
T 1t6n_A 171 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDP 215 (220)
T ss_dssp HSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSC
T ss_pred hcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCC
Confidence 222344555666655443 7899999999953 4444 455544
No 80
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.73 E-value=6.9e-18 Score=165.44 Aligned_cols=202 Identities=16% Similarity=0.126 Sum_probs=129.7
Q ss_pred cccCccCCC----CCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCc
Q 008221 41 SLINRWNGK----PYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRK 116 (573)
Q Consensus 41 ~~~~~f~~~----~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~ 116 (573)
.+..+|+++ ++++++++.+.++++..++++|.++++.+.+|+++++.+|||||||..+..+++...........+.
T Consensus 22 ~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 101 (245)
T 3dkp_A 22 DPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRA 101 (245)
T ss_dssp CCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCE
T ss_pred CcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceE
Confidence 445678776 8999999999999999999999999999999999999999999999987766654332111112234
Q ss_pred eEEEEecCcccccccHHHHHHHhhhhcccchhceee---eecccccccccccccCHHHHHHHHhccc---ccCCCcEEEE
Q 008221 117 MMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSI---RFEDCSSARTVLKYLTDGMLLREAMTDP---LLERYKVIVL 190 (573)
Q Consensus 117 ~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~---~~~~~~~~~~~i~~lT~G~l~r~~~~~~---ll~~~~~lIL 190 (573)
++++|++.+..+.......+....+..+....|... ...........|.+.|+|++..++.... .+.+++++|+
T Consensus 102 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 102 LIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 555555555444433333333322322222222110 1111122345688999999999887652 3789999999
Q ss_pred eCCCcCcccH---HHHHHHHHHHHHh--CCCcEEEEecccccH--HHHHc-hhCCCCeeeec
Q 008221 191 DEAHERTLAT---DVLFGLLKEVLKN--RPDLKLVVMSATLEA--EKFQG-YFYGAPLMKVP 244 (573)
Q Consensus 191 DEa~~r~~~~---d~ll~~l~~l~~~--~~~~~iil~SATl~~--~~~~~-~~~~~~~i~v~ 244 (573)
||+|. +.. ..+...+..+... .++.++++||||++. ..+.+ ++.++..+.+.
T Consensus 182 DEah~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 182 DESDK--LFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp SSHHH--HHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEEC
T ss_pred eChHH--hcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeC
Confidence 99996 322 2344444444432 237899999999964 44554 44444445443
No 81
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.72 E-value=8.4e-18 Score=162.95 Aligned_cols=195 Identities=18% Similarity=0.175 Sum_probs=124.1
Q ss_pred cccCccCC-CCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccC---CC--hhhc
Q 008221 41 SLINRWNG-KPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI---ET--PDRR 114 (573)
Q Consensus 41 ~~~~~f~~-~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~---~~--~~~~ 114 (573)
.+..+|++ +++++.+++.+.+.++..++++|.++++.+.+|+++++.+|||||||..+..+++..... .. ....
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~ 95 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGP 95 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCC
T ss_pred CChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCC
Confidence 44567888 799999999999999999999999999999999999999999999999876555432210 00 1112
Q ss_pred CceEEEEecCcccccccHHHHHHHhh--hhcccchhceeeeeccc--ccccccccccCHHHHHHHHhcccc-cCCCcEEE
Q 008221 115 RKMMIACTQPRRVAAMSVSRRVAEEM--DVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIV 189 (573)
Q Consensus 115 ~~~~i~~t~p~~~~~~~v~~~v~~~~--~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lI 189 (573)
+.++++ |.+..+.++.+.+.... +.......|........ ......+.++|+|++...+....+ +.+++++|
T Consensus 96 ~~lil~---Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lV 172 (228)
T 3iuy_A 96 GMLVLT---PTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLV 172 (228)
T ss_dssp SEEEEC---SSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEE
T ss_pred cEEEEe---CCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEE
Confidence 233444 44444444555544421 22222222221111110 012346888999999998777665 88999999
Q ss_pred EeCCCcCcccHHHHHHHHHHHHHh-CCCcEEEEecccccH--HHHHchhCCCCe
Q 008221 190 LDEAHERTLATDVLFGLLKEVLKN-RPDLKLVVMSATLEA--EKFQGYFYGAPL 240 (573)
Q Consensus 190 LDEa~~r~~~~d~ll~~l~~l~~~-~~~~~iil~SATl~~--~~~~~~~~~~~~ 240 (573)
+||||. +....+...+..+... .++.+++++|||++. ..+...+.+.|+
T Consensus 173 iDEah~--~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~ 224 (228)
T 3iuy_A 173 IDEADK--MLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPM 224 (228)
T ss_dssp ECCHHH--HHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCE
T ss_pred EECHHH--HhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCE
Confidence 999994 3322333334444433 348899999999964 444444433444
No 82
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.71 E-value=3.7e-17 Score=155.67 Aligned_cols=193 Identities=21% Similarity=0.195 Sum_probs=124.3
Q ss_pred ccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecC
Q 008221 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQP 124 (573)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p 124 (573)
+|+++++++++.+.+...++..++++|.++++.+.+|+++++.+|||||||+++..+++........ ......+++..|
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-~~~~~~~lil~P 80 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE-RGRKPRALVLTP 80 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-TTCCCSEEEECS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCcEEEEEC
Confidence 5899999999999999999999999999999999999999999999999999877665543321100 001122333344
Q ss_pred cccccccHHHHHHHhhh-hcccchhceeeeecc--cccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCCCcCcccH
Q 008221 125 RRVAAMSVSRRVAEEMD-VTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLAT 200 (573)
Q Consensus 125 ~~~~~~~v~~~v~~~~~-~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa~~r~~~~ 200 (573)
.+..+.++.+.+..... ..+....|....... .......+.+.|+|++.+.+....+ +.+++++|+||+|. +..
T Consensus 81 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~--~~~ 158 (207)
T 2gxq_A 81 TRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE--MLS 158 (207)
T ss_dssp SHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH--HHH
T ss_pred CHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH--hhc
Confidence 44444455555544322 122222221100000 0012356888999999888766544 78999999999995 333
Q ss_pred HHHHHHHHHHHHhC-CCcEEEEecccccH--HHHHchhCCCCe
Q 008221 201 DVLFGLLKEVLKNR-PDLKLVVMSATLEA--EKFQGYFYGAPL 240 (573)
Q Consensus 201 d~ll~~l~~l~~~~-~~~~iil~SATl~~--~~~~~~~~~~~~ 240 (573)
..+...+..+.... ++.+++++|||++. +.+.+.+.+.|+
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~ 201 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPV 201 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCE
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCe
Confidence 33444455554433 37899999999974 445544433444
No 83
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.70 E-value=8.6e-18 Score=166.64 Aligned_cols=194 Identities=16% Similarity=0.171 Sum_probs=123.5
Q ss_pred CccCCCC--CChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccC---CChhhcCceE
Q 008221 44 NRWNGKP--YSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI---ETPDRRRKMM 118 (573)
Q Consensus 44 ~~f~~~~--l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~---~~~~~~~~~~ 118 (573)
.+|.+++ +++++++.+..+++..++++|.++++.+..|++++++||||||||+.+..+++..... ......+.++
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 4577776 9999999999999999999999999999999999999999999999877665532210 0111223444
Q ss_pred EEEecCcccccccHHHHHHHhhhhcccchhceeeeecccc--cccccccccCHHHHHHHHhccc--ccCCCcEEEEeCCC
Q 008221 119 IACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDP--LLERYKVIVLDEAH 194 (573)
Q Consensus 119 i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~~~~--ll~~~~~lILDEa~ 194 (573)
++|++++..+.....+.+....+..++..+|......... .....|.++|+|++...+.... .+.+++++|+||+|
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 5555555444444343333333333333333221111110 1135688999999998876654 47899999999999
Q ss_pred cCcccHHHHHHHHHHHHHhC-CCcEEEEecccccH--HHHHc-hhCCCC
Q 008221 195 ERTLATDVLFGLLKEVLKNR-PDLKLVVMSATLEA--EKFQG-YFYGAP 239 (573)
Q Consensus 195 ~r~~~~d~ll~~l~~l~~~~-~~~~iil~SATl~~--~~~~~-~~~~~~ 239 (573)
. +....+...+..+.... ++.++++||||++. +.+++ ++.+.+
T Consensus 212 ~--l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 212 R--ILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp H--HHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred H--HhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 4 33333445555555543 37899999999964 44554 444443
No 84
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.70 E-value=7.3e-18 Score=166.11 Aligned_cols=200 Identities=17% Similarity=0.197 Sum_probs=128.9
Q ss_pred ccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCC--------Chhh
Q 008221 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIE--------TPDR 113 (573)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~--------~~~~ 113 (573)
+..+|+++++++.+.+.+..+++..++++|.++++.+.+|+++++.+|||||||..+..+++...... ....
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 45679999999999999999999999999999999999999999999999999998776554332100 0011
Q ss_pred cCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeeccc--ccccccccccCHHHHHHHHhcccc-cCCCcEEEE
Q 008221 114 RRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVL 190 (573)
Q Consensus 114 ~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIL 190 (573)
.+.++++|++++..+.....+.+....+..+....|........ ......|.++|+|++.+.+....+ +.+++++|+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 23445555555544444444444333233322222221110000 012346889999999988876654 889999999
Q ss_pred eCCCcCcccHHHHHHHHHHHHHh--CC---CcEEEEecccccH--HHHHc-hhCCCCeeee
Q 008221 191 DEAHERTLATDVLFGLLKEVLKN--RP---DLKLVVMSATLEA--EKFQG-YFYGAPLMKV 243 (573)
Q Consensus 191 DEa~~r~~~~d~ll~~l~~l~~~--~~---~~~iil~SATl~~--~~~~~-~~~~~~~i~v 243 (573)
||||. +....+...+..+... .+ +.+++++|||++. ..+++ ++.++..+.+
T Consensus 181 DEah~--~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 181 DEADR--MLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp ETHHH--HHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred eCHHH--HHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 99995 3333344445555542 22 6799999999964 34554 4444433443
No 85
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.66 E-value=3e-15 Score=166.93 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=99.1
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccc
Q 008221 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (573)
Q Consensus 278 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~ 357 (573)
...++|||+.....++.+...|... ++.+..+||++++.+|.++++.|..+.. ....+|+||++++.
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~----~~~v~L~st~a~g~ 481 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNR---------RYLYVRLDGTMSIKKRAKIVERFNNPSS----PEFIFMLSSKAGGC 481 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHH---------TCCEEEECSSCCHHHHHHHHHHHHSTTC----CCCEEEEEGGGSCT
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHC---------CCCEEEEeCCCCHHHHHHHHHHhcCCCC----CcEEEEEecccccC
Confidence 4568999999999999999999875 7789999999999999999999987651 01358999999999
Q ss_pred ccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC---CCCeEEeccchhhhh
Q 008221 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTEKSFN 422 (573)
Q Consensus 358 gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~---~~G~~~~l~t~~~~~ 422 (573)
|||++++++||.++. |-+.+.+.||+||++|. ++..+|+|++....+
T Consensus 482 Glnl~~a~~Vi~~d~------------------~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiE 531 (644)
T 1z3i_X 482 GLNLIGANRLVMFDP------------------DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIE 531 (644)
T ss_dssp TCCCTTEEEEEECSC------------------CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHH
T ss_pred CcccccCCEEEEECC------------------CCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHH
Confidence 999999999999998 89999999999999998 345789998876554
No 86
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.63 E-value=7.3e-16 Score=157.90 Aligned_cols=151 Identities=20% Similarity=0.319 Sum_probs=115.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCCh------hhcCceEEEEecCcccccccHHHHHHHh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIETP------DRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~~------~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.+..|++++|+|||||||||+++. +.+++.++... ..++.++++++.+.....+++.+++...
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~ 129 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 129 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHH
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHH
Confidence 357899999999999999999983 33444443221 1235688999998888888999998643
Q ss_pred hh-------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 140 MD-------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 140 ~~-------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
.. ..+...+|.. ...+..+..+|+|++||+.++++++.+|++|++|| +++|......++
T Consensus 130 ~~~~~~~~~~~~~~v~~lL~~vgL~------~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~ 203 (366)
T 3tui_C 130 LELDNTPKDEVKRRVTELLSLVGLG------DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSIL 203 (366)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHTCG------GGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCc------hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence 21 1122233332 23466788999999999999999999999999999 889999999999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH-HHHHch
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
++++++.+.. +.++|++||.++. ..+++.
T Consensus 204 ~lL~~l~~~~-g~Tii~vTHdl~~~~~~aDr 233 (366)
T 3tui_C 204 ELLKDINRRL-GLTILLITHEMDVVKRICDC 233 (366)
T ss_dssp HHHHHHHHHS-CCEEEEEESCHHHHHHHCSE
T ss_pred HHHHHHHHhC-CCEEEEEecCHHHHHHhCCE
Confidence 9999997664 7899999999864 455553
No 87
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.62 E-value=5.3e-16 Score=150.86 Aligned_cols=145 Identities=18% Similarity=0.257 Sum_probs=107.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCChh-------hcCceEEEEecCcccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+..|++++|+|||||||||+++.+ .+++.++.... ..+.++++++.+.....+++.+++...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~ 107 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELP 107 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHH
Confidence 568999999999999999999843 33443322110 123478899888877788999988643
Q ss_pred hhhc----------------ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 140 MDVT----------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 140 ~~~~----------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
.... ....+|.. . ...+..+..+|+|++||+.++++++.+|+++|||| +++|.....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~ 182 (235)
T 3tif_A 108 LIFKYRGAMSGEERRKRALECLKMAELE----E-RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGE 182 (235)
T ss_dssp HHTCSSSCCCHHHHHHHHHHHHHHTTCC----G-GGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred HHhhhccCCCHHHHHHHHHHHHHHCCCC----h-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 2110 11112211 0 01256788899999999999999999999999999 889999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
.++++++++.+.. +..+|++||.++.
T Consensus 183 ~i~~~l~~l~~~~-g~tvi~vtHd~~~ 208 (235)
T 3tif_A 183 KIMQLLKKLNEED-GKTVVVVTHDINV 208 (235)
T ss_dssp HHHHHHHHHHHHH-CCEEEEECSCHHH
T ss_pred HHHHHHHHHHHHc-CCEEEEEcCCHHH
Confidence 9999999987543 7899999999863
No 88
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.61 E-value=1.6e-15 Score=155.28 Aligned_cols=150 Identities=22% Similarity=0.280 Sum_probs=112.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccC----CC-hhhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDI----ET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~----~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
+..|++++|+|||||||||+++. +.+++.++ .. ....+.++++++.+..+..+++.++++....
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~ 106 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLG 106 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTST
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHH
Confidence 56899999999999999999983 33444432 11 1223568899998888888999999965321
Q ss_pred h-------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHH
Q 008221 142 V-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (573)
Q Consensus 142 ~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~ 206 (573)
. .+...+|.. ...+..+..+|+|++||+.++++++.+|++|+||| +++|......+...
T Consensus 107 ~~~~~~~~~~~~v~~~l~~~gL~------~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~ 180 (359)
T 3fvq_A 107 NGKGRTAQERQRIEAMLELTGIS------ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED 180 (359)
T ss_dssp TSSCCSHHHHHHHHHHHHHHTCG------GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHcCCc------hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 1 112223322 23467788999999999999999999999999999 88888888889888
Q ss_pred HHHHHHhCCCcEEEEecccccH-HHHHch
Q 008221 207 LKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 207 l~~l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
++++.+.. +.++|++||.++. ..+++.
T Consensus 181 l~~~~~~~-g~tvi~vTHd~~ea~~~aDr 208 (359)
T 3fvq_A 181 MIAALRAN-GKSAVFVSHDREEALQYADR 208 (359)
T ss_dssp HHHHHHHT-TCEEEEECCCHHHHHHHCSE
T ss_pred HHHHHHhC-CCEEEEEeCCHHHHHHHCCE
Confidence 88877654 8899999999853 445543
No 89
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.61 E-value=1.3e-15 Score=157.08 Aligned_cols=150 Identities=15% Similarity=0.202 Sum_probs=113.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|++++|+|||||||||+++. +.+++.++.. ....+.++++++.+.....+++.++++.....
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~ 105 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA 105 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTC
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCC
Confidence 56899999999999999999983 3344443322 12235688999988888889999998543211
Q ss_pred ----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.+...+|.. ...+..+..+|+|++||+.++++++.+|++|+||| +.+|......+...++++
T Consensus 106 ~~~~~~~~v~~~l~~~~L~------~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l 179 (381)
T 3rlf_A 106 KKEVINQRVNQVAEVLQLA------HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL 179 (381)
T ss_dssp CHHHHHHHHHHHHHHTTCG------GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCc------hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 112223322 23467788999999999999999999999999999 888989999999999998
Q ss_pred HHhCCCcEEEEecccccH-HHHHch
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
.+.. +.++|++||.++. ..+++.
T Consensus 180 ~~~~-g~tii~vTHd~~ea~~~aDr 203 (381)
T 3rlf_A 180 HKRL-GRTMIYVTHDQVEAMTLADK 203 (381)
T ss_dssp HHHH-CCEEEEECSCHHHHHHHCSE
T ss_pred HHhC-CCEEEEEECCHHHHHHhCCE
Confidence 7654 7899999999853 455553
No 90
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.60 E-value=1.4e-15 Score=146.85 Aligned_cols=143 Identities=19% Similarity=0.266 Sum_probs=105.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCCh--h-----hcCceEEEEecCcccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP--D-----RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~--~-----~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+..|++++|+|||||||||+++.+ .+++.++... . ..+.+.++++.+.....+++.+++...
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~ 106 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVP 106 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhH
Confidence 568999999999999999999843 3333332210 0 013578888888777778888887542
Q ss_pred hhh-------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 140 MDV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 140 ~~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
... .....+|. ....+..+..+|+|++||+.++++++.+|++++||| +++|......+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l------~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~ 180 (224)
T 2pcj_A 107 MLKMGKPKKEAKERGEYLLSELGL------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM 180 (224)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTC------TTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCC------chhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 110 01111221 122456788899999999999999999999999999 889999999999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
++++++.+. +..+|++||.++.
T Consensus 181 ~~l~~l~~~--g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 181 DIFLKINEG--GTSIVMVTHEREL 202 (224)
T ss_dssp HHHHHHHHT--TCEEEEECSCHHH
T ss_pred HHHHHHHHC--CCEEEEEcCCHHH
Confidence 999998654 7899999998753
No 91
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=9e-16 Score=175.36 Aligned_cols=115 Identities=14% Similarity=0.130 Sum_probs=100.3
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeeccccc
Q 008221 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (573)
Q Consensus 278 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~ 357 (573)
.+.++|||+.....++.+...|... ++.+..+||+++..+|+++++.|..+.. ....+|+||.+++.
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~---------g~~~~~i~G~~~~~eR~~~i~~F~~~~~----~~~v~LlSt~agg~ 637 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK---------GINFQRLDGTVPSAQRRISIDHFNSPDS----NDFVFLLSTRAGGL 637 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH---------TCCCEEESTTSCHHHHHHHHHTTSSTTC----SCCCEEEEHHHHTT
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhCCCC----CceEEEEecccccC
Confidence 4568999999999999999999875 7888999999999999999999987541 11469999999999
Q ss_pred ccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC---CCCeEEeccchhhhhh
Q 008221 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTEKSFNN 423 (573)
Q Consensus 358 gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~---~~G~~~~l~t~~~~~~ 423 (573)
|||++.+++||.++. |-+...+.||.||++|. ++..+|+|+++...+.
T Consensus 638 GlNL~~a~~VI~~D~------------------~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe 688 (800)
T 3mwy_W 638 GINLMTADTVVIFDS------------------DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEE 688 (800)
T ss_dssp TCCCTTCCEEEESSC------------------CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHH
T ss_pred CCCccccceEEEecC------------------CCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHH
Confidence 999999999999988 88899999999999997 5678999999876643
No 92
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.59 E-value=3.3e-15 Score=148.28 Aligned_cols=149 Identities=20% Similarity=0.291 Sum_probs=108.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCC-C----hhhcCceEEEEecCc-ccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIE-T----PDRRRKMMIACTQPR-RVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~-~----~~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~ 140 (573)
+..|++++|+|||||||||+++. +.+++.++. . ....+.++++++.|. .+...++.+++....
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~ 110 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGA 110 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHH
Confidence 57899999999999999999983 334444331 1 012345788888873 344678888875432
Q ss_pred hh-------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 141 DV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 141 ~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
.. .....+|.. ...+..+..+|+|++||+.++++++.+|++||||| +++|......+++
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~ 184 (275)
T 3gfo_A 111 VNMKLPEDEIRKRVDNALKRTGIE------HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK 184 (275)
T ss_dssp HTSCCCHHHHHHHHHHHHHHTTCG------GGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCc------hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 10 111222221 23456788899999999999999999999999999 8899999999999
Q ss_pred HHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++++.+.. +.++|++||.++. ..+++
T Consensus 185 ~l~~l~~~~-g~tvi~vtHdl~~~~~~~d 212 (275)
T 3gfo_A 185 LLVEMQKEL-GITIIIATHDIDIVPLYCD 212 (275)
T ss_dssp HHHHHHHHH-CCEEEEEESCCSSGGGGCS
T ss_pred HHHHHHhhC-CCEEEEEecCHHHHHHhCC
Confidence 999987333 7899999999863 33443
No 93
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.58 E-value=4.4e-15 Score=141.94 Aligned_cols=139 Identities=20% Similarity=0.235 Sum_probs=104.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhh----
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV---- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~---- 142 (573)
+..|++++|+|||||||||+++.+. +++.++. ...+.+.++++++.....+++.+++......
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~ 109 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK 109 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCc
Confidence 5689999999999999999998432 2222211 1234577888888777778898887542210
Q ss_pred -------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHh
Q 008221 143 -------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (573)
Q Consensus 143 -------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~ 213 (573)
.....+|+. .. +..+..+|+|++||+.++++++.+|++++||| +++|......+.++++++.+.
T Consensus 110 ~~~~~~~~~l~~~gl~------~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 182 (214)
T 1sgw_A 110 VNKNEIMDALESVEVL------DL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 182 (214)
T ss_dssp CCHHHHHHHHHHTTCC------CT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCC------cC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC
Confidence 011122221 12 56678899999999999999999999999999 889999999999999998654
Q ss_pred CCCcEEEEeccccc
Q 008221 214 RPDLKLVVMSATLE 227 (573)
Q Consensus 214 ~~~~~iil~SATl~ 227 (573)
+..+|++||.++
T Consensus 183 --g~tiiivtHd~~ 194 (214)
T 1sgw_A 183 --KGIVIISSREEL 194 (214)
T ss_dssp --HSEEEEEESSCC
T ss_pred --CCEEEEEeCCHH
Confidence 679999999875
No 94
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.58 E-value=2.7e-15 Score=148.49 Aligned_cols=149 Identities=15% Similarity=0.230 Sum_probs=108.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
+..|++++|+|||||||||+++.+ .+++.++.. ....+.+.++++.+......++.+++......
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY 113 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc
Confidence 578999999999999999999843 333333221 11223467777777666678899888643211
Q ss_pred ----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccC------CCcEEEEeC--CCcCcccHHHHH
Q 008221 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLE------RYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~------~~~~lILDE--a~~r~~~~d~ll 204 (573)
.....+|.. ...+..+..+|+|++||+.++++++. +|++||||| +++|......++
T Consensus 114 ~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~ 187 (266)
T 4g1u_C 114 GGSQDRQALQQVMAQTDCL------ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL 187 (266)
T ss_dssp CSTTHHHHHHHHHHHTTCS------TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCh------hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH
Confidence 111222221 23456778899999999999999998 999999999 889999999999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++++++.+.. +..+|++||.++. ..+++
T Consensus 188 ~~l~~l~~~~-~~tvi~vtHdl~~~~~~~d 216 (266)
T 4g1u_C 188 RLLRQLTRQE-PLAVCCVLHDLNLAALYAD 216 (266)
T ss_dssp HHHHHHHHHS-SEEEEEECSCHHHHHHHCS
T ss_pred HHHHHHHHcC-CCEEEEEEcCHHHHHHhCC
Confidence 9999987653 5799999999864 34554
No 95
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.58 E-value=3.3e-15 Score=152.93 Aligned_cols=149 Identities=16% Similarity=0.263 Sum_probs=111.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|++++|+|||||||||+++.+ .+++.++.. ....+.+.++++.+.....+++.++++.....
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~ 102 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI 102 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC
Confidence 568999999999999999999843 334433221 11234578888888777888999998653211
Q ss_pred -------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHh
Q 008221 143 -------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (573)
Q Consensus 143 -------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~ 213 (573)
.+...+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+...++++.+.
T Consensus 103 ~~~~~v~~~l~~~~L~------~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~ 176 (348)
T 3d31_A 103 KDPKRVLDTARDLKIE------HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK 176 (348)
T ss_dssp CCHHHHHHHHHHTTCT------TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCc------hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh
Confidence 111122211 23466788999999999999999999999999999 889999999999999998765
Q ss_pred CCCcEEEEecccccH-HHHHc
Q 008221 214 RPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 214 ~~~~~iil~SATl~~-~~~~~ 233 (573)
. +.++|++||.++. ..+++
T Consensus 177 ~-g~tii~vTHd~~~~~~~ad 196 (348)
T 3d31_A 177 N-KLTVLHITHDQTEARIMAD 196 (348)
T ss_dssp T-TCEEEEEESCHHHHHHHCS
T ss_pred c-CCEEEEEeCCHHHHHHhCC
Confidence 4 7899999999853 44554
No 96
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.58 E-value=4.3e-15 Score=152.16 Aligned_cols=149 Identities=21% Similarity=0.260 Sum_probs=111.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|++++|+|||||||||+++.+ .+++.++.. ....+.++++++.+.....+++.+++......
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~ 117 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRV 117 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC
Confidence 578999999999999999999843 333433221 11235678888888777888999998643211
Q ss_pred ----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.+...+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+...++++
T Consensus 118 ~~~~~~~~v~~~l~~~gL~------~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 191 (355)
T 1z47_A 118 PKDEMDARVRELLRFMRLE------SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQV 191 (355)
T ss_dssp CHHHHHHHHHHHHHHTTCG------GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCh------hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 111222221 23456788999999999999999999999999999 889999999999999998
Q ss_pred HHhCCCcEEEEecccccH-HHHHc
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+.. +.++|++||.++. ..+++
T Consensus 192 ~~~~-g~tvi~vTHd~~~a~~~ad 214 (355)
T 1z47_A 192 HDEM-GVTSVFVTHDQEEALEVAD 214 (355)
T ss_dssp HHHH-TCEEEEECSCHHHHHHHCS
T ss_pred HHhc-CCEEEEECCCHHHHHHhCC
Confidence 7653 7899999999853 44554
No 97
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.57 E-value=4.5e-15 Score=146.48 Aligned_cols=148 Identities=17% Similarity=0.330 Sum_probs=108.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCC--C---hhhcCceEEEEecCcccccccHHHHHHHhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIE--T---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM- 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~--~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~- 140 (573)
+..|++++|+|||||||||+++. +.+++.++. . ....+.+.++++.+.....+++.+++....
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~ 126 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPM 126 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHH
Confidence 57899999999999999999983 234443321 0 011234778888877667778988875421
Q ss_pred ---hh----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 141 ---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 141 ---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
+. .....+|. ....+..+..+|+|++||+.++++++.+|+++|||| +++|......+++
T Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~L------~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~ 200 (263)
T 2olj_A 127 KVRKWPREKAEAKAMELLDKVGL------KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS 200 (263)
T ss_dssp HTSCCCHHHHHHHHHHHHHHTTC------GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHCCC------chHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 10 01111221 122356788899999999999999999999999999 8899999999999
Q ss_pred HHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++++.+. +..+|++||.++. ..+++
T Consensus 201 ~l~~l~~~--g~tvi~vtHd~~~~~~~~d 227 (263)
T 2olj_A 201 VMKQLANE--GMTMVVVTHEMGFAREVGD 227 (263)
T ss_dssp HHHHHHHT--TCEEEEECSCHHHHHHHCS
T ss_pred HHHHHHhC--CCEEEEEcCCHHHHHHhCC
Confidence 99998654 7899999999864 34444
No 98
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.57 E-value=6.6e-15 Score=144.75 Aligned_cols=142 Identities=17% Similarity=0.245 Sum_probs=105.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (573)
+..|++++|+|||||||||+++.+ .+++.++.. ....+.+.++++.+.....+++.+++......
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 117 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA 117 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC
Confidence 568999999999999999999843 233332211 11234578888887766777888887542110
Q ss_pred -----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 143 -----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 143 -----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
.....+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+.+++++
T Consensus 118 ~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 191 (256)
T 1vpl_A 118 SSSSEIEEMVERATEIAGLG------EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191 (256)
T ss_dssp CCHHHHHHHHHHHHHHHCCG------GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCCCc------hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 111122221 22356778899999999999999999999999999 88999999999999999
Q ss_pred HHHhCCCcEEEEeccccc
Q 008221 210 VLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~ 227 (573)
+.+. +..+|++||.++
T Consensus 192 l~~~--g~tiiivtHd~~ 207 (256)
T 1vpl_A 192 ASQE--GLTILVSSHNML 207 (256)
T ss_dssp HHHT--TCEEEEEECCHH
T ss_pred HHhC--CCEEEEEcCCHH
Confidence 8653 789999999875
No 99
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.57 E-value=5.5e-15 Score=151.77 Aligned_cols=149 Identities=17% Similarity=0.252 Sum_probs=111.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|++++|+|||||||||+++.+ .+++.++.. ....+.++++++.+.....+++.++++.....
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 105 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRI 105 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence 568999999999999999999843 344433321 11235688888888777888999998753211
Q ss_pred ----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.+...+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+...++++
T Consensus 106 ~~~~~~~~v~~~l~~~~L~------~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (359)
T 2yyz_A 106 SKDEVEKRVVEIARKLLID------NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHL 179 (359)
T ss_dssp HHHHTTHHHHHHHHHTTCG------GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCc------hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 011122211 23456788999999999999999999999999999 889999999999999998
Q ss_pred HHhCCCcEEEEecccccH-HHHHc
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+.. +.++|++||.++. ..+++
T Consensus 180 ~~~~-g~tvi~vTHd~~~~~~~ad 202 (359)
T 2yyz_A 180 QQEL-GITSVYVTHDQAEAMTMAS 202 (359)
T ss_dssp HHHH-CCEEEEEESCHHHHHHHCS
T ss_pred HHhc-CCEEEEEcCCHHHHHHhCC
Confidence 7653 7899999999853 34554
No 100
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.56 E-value=7.1e-15 Score=144.96 Aligned_cols=149 Identities=18% Similarity=0.215 Sum_probs=106.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCCh----hhcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP----DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~----~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
+..|++++|+|||||||||+++.+ .+++.++... ...+.+.++++.+.....+++.+++......
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 109 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEIC 109 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhh
Confidence 578999999999999999999843 3344332211 0123577888888777778999988653211
Q ss_pred -ccc------------------chhceee-eecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 143 -TIG------------------EEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 143 -~~~------------------~~vg~~~-~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
..+ ..+.... .+.-....+..+..+|+|++||+.++++++.+|+++|||| +++|....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~ 189 (257)
T 1g6h_A 110 PGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189 (257)
T ss_dssp TTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHH
T ss_pred hccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 000 0000000 0111122356788899999999999999999999999999 88999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
..++++++++.+. +..+|++||.++.
T Consensus 190 ~~l~~~l~~l~~~--g~tvi~vtHd~~~ 215 (257)
T 1g6h_A 190 HDIFNHVLELKAK--GITFLIIEHRLDI 215 (257)
T ss_dssp HHHHHHHHHHHHT--TCEEEEECSCCST
T ss_pred HHHHHHHHHHHHC--CCEEEEEecCHHH
Confidence 9999999998654 7899999999863
No 101
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.56 E-value=6.1e-15 Score=151.61 Aligned_cols=149 Identities=19% Similarity=0.264 Sum_probs=111.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|++++|+|||||||||+++.+ .+++.++.. ....+.+.++++.+.....+++.+++......
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 105 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA 105 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence 568999999999999999999843 344433321 11235688888888777888999998653211
Q ss_pred ----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.....+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+...++++
T Consensus 106 ~~~~~~~~v~~~l~~~~L~------~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (362)
T 2it1_A 106 PREEIDKKVREVAKMLHID------KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRL 179 (362)
T ss_dssp CHHHHHHHHHHHHHHTTCT------TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCc------hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 111222221 23456788999999999999999999999999999 889999999999999998
Q ss_pred HHhCCCcEEEEecccccH-HHHHc
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+.. +.++|++||.++. ..+++
T Consensus 180 ~~~~-g~tvi~vTHd~~~a~~~ad 202 (362)
T 2it1_A 180 QKEL-GITTVYVTHDQAEALAMAD 202 (362)
T ss_dssp HHHH-TCEEEEEESCHHHHHHHCS
T ss_pred HHhC-CCEEEEECCCHHHHHHhCC
Confidence 7653 7899999999853 34554
No 102
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.56 E-value=5.5e-15 Score=151.79 Aligned_cols=149 Identities=17% Similarity=0.214 Sum_probs=111.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC------hhhcCceEEEEecCcccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET------PDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
+..|++++|+|||||||||+++.+ .+++.++.. ....+.++++++.+.....+++.+++....
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 107 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPL 107 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGG
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence 568999999999999999999843 333332211 112346788888887778889999986532
Q ss_pred hh-------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHH
Q 008221 141 DV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (573)
Q Consensus 141 ~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~ 205 (573)
.. .+...+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+..
T Consensus 108 ~~~~~~~~~~~~~v~~~l~~~~L~------~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~ 181 (353)
T 1oxx_K 108 TNMKMSKEEIRKRVEEVAKILDIH------HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181 (353)
T ss_dssp TTSSCCHHHHHHHHHHHHHHTTCG------GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCc------hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 11 111122221 22456788999999999999999999999999999 8899999999999
Q ss_pred HHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 206 ~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.++++.+.. +.++|++||.++. ..+++
T Consensus 182 ~l~~l~~~~-g~tvi~vTHd~~~~~~~ad 209 (353)
T 1oxx_K 182 LVKEVQSRL-GVTLLVVSHDPADIFAIAD 209 (353)
T ss_dssp HHHHHHHHH-CCEEEEEESCHHHHHHHCS
T ss_pred HHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 999987653 7899999999853 34554
No 103
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.56 E-value=6.9e-15 Score=143.52 Aligned_cols=154 Identities=17% Similarity=0.250 Sum_probs=108.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCCh--h--hcCceEEEEecCcccccccHHHHHHHhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP--D--RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~--~--~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (573)
+..|++++|+|||||||||+++.+ .+++.++... . ..+.+.++++.+.....+++.+++......
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~ 108 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN 108 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhc
Confidence 568999999999999999999843 3344332211 1 123478888888777778999988643200
Q ss_pred cc-----cchhc-eeeeec-ccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHh
Q 008221 143 TI-----GEEVG-YSIRFE-DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (573)
Q Consensus 143 ~~-----~~~vg-~~~~~~-~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~ 213 (573)
.. ...+. ....+. -....+..+..+|+|++||+.++++++.+|++++||| +++|......++++++++.+.
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 188 (240)
T 1ji0_A 109 RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE 188 (240)
T ss_dssp CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC
Confidence 00 00000 000010 1122356678899999999999999999999999999 889999999999999998653
Q ss_pred CCCcEEEEeccccc-HHHHHc
Q 008221 214 RPDLKLVVMSATLE-AEKFQG 233 (573)
Q Consensus 214 ~~~~~iil~SATl~-~~~~~~ 233 (573)
+..+|++||.++ ...+++
T Consensus 189 --g~tvi~vtHd~~~~~~~~d 207 (240)
T 1ji0_A 189 --GTTILLVEQNALGALKVAH 207 (240)
T ss_dssp --TCCEEEEESCHHHHHHHCS
T ss_pred --CCEEEEEecCHHHHHHhCC
Confidence 789999999985 345554
No 104
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.56 E-value=4.8e-15 Score=146.51 Aligned_cols=148 Identities=18% Similarity=0.271 Sum_probs=108.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC----------------hhhcCceEEEEecCcccccc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET----------------PDRRRKMMIACTQPRRVAAM 130 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~----------------~~~~~~~~i~~t~p~~~~~~ 130 (573)
+..|++++|+|||||||||+++.+ .+++.++.. ....+.+.++++.+.....+
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~l 108 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM 108 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCC
Confidence 578999999999999999999833 334433220 01123577888887777778
Q ss_pred cHHHHHHHhh----hh----------cccchhceeeeeccccc-ccccccccCHHHHHHHHhcccccCCCcEEEEeC--C
Q 008221 131 SVSRRVAEEM----DV----------TIGEEVGYSIRFEDCSS-ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--A 193 (573)
Q Consensus 131 ~v~~~v~~~~----~~----------~~~~~vg~~~~~~~~~~-~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a 193 (573)
++.+++.... +. .....+|.. .. .+..+..+|+|++||+.++++++.+|++++||| +
T Consensus 109 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts 182 (262)
T 1b0u_A 109 TVLENVMEAPIQVLGLSKHDARERALKYLAKVGID------ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 182 (262)
T ss_dssp CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC------HHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTT
T ss_pred cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC------chhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 8988885421 10 011112211 22 456778899999999999999999999999999 8
Q ss_pred CcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 194 HERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 194 ~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
++|......++++++++.+. +..+|++||.++. ..+++
T Consensus 183 ~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d 221 (262)
T 1b0u_A 183 ALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMGFARHVSS 221 (262)
T ss_dssp TSCHHHHHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCC
Confidence 89999999999999998654 7899999999864 34554
No 105
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.55 E-value=6.7e-15 Score=151.84 Aligned_cols=149 Identities=15% Similarity=0.229 Sum_probs=106.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+..|++++|+|||||||||+++.+ .+++.++.. ....+.+.++++.+.....+++.++++.....
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 113 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF 113 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence 568999999999999999999843 344433221 11234688899888777888999998653211
Q ss_pred ----------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
.+...+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+...++++
T Consensus 114 ~~~~~~~~v~~~l~~~~L~------~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 187 (372)
T 1v43_A 114 PKDEIDKRVRWAAELLQIE------ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 187 (372)
T ss_dssp CHHHHHHHHHHHHHHTTCG------GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCh------hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 111222221 23456788999999999999999999999999999 889999999999999998
Q ss_pred HHhCCCcEEEEecccccH-HHHHc
Q 008221 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+.. +.++|++||.++. ..+++
T Consensus 188 ~~~~-g~tvi~vTHd~~~a~~~ad 210 (372)
T 1v43_A 188 QQKL-KVTTIYVTHDQVEAMTMGD 210 (372)
T ss_dssp HHHH-TCEEEEEESCHHHHHHHCS
T ss_pred HHhC-CCEEEEEeCCHHHHHHhCC
Confidence 7653 7899999999853 34554
No 106
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.55 E-value=7.6e-15 Score=151.70 Aligned_cols=150 Identities=17% Similarity=0.257 Sum_probs=111.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-------hhhcCceEEEEecCcccccccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
+..|++++|+|||||||||+++.+ .+++.++.. ....+.++++++.+.....+++.++++..
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~ 105 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFP 105 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHH
Confidence 568999999999999999999843 333332211 11234678888888777888999998653
Q ss_pred hhh-------------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 140 MDV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 140 ~~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
... .+...+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+.
T Consensus 106 ~~~~~~~~~~~~~~v~~~l~~~~L~------~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 179 (372)
T 1g29_1 106 LKLRKVPRQEIDQRVREVAELLGLT------ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMR 179 (372)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHTCG------GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCc------hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHH
Confidence 211 111222221 23456788999999999999999999999999999 889999999999
Q ss_pred HHHHHHHHhCCCcEEEEecccccH-HHHHch
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
..++++.+.. +.++|++||.++. ..+++.
T Consensus 180 ~~l~~l~~~~-g~tvi~vTHd~~~a~~~adr 209 (372)
T 1g29_1 180 AELKKLQRQL-GVTTIYVTHDQVEAMTMGDR 209 (372)
T ss_dssp HHHHHHHHHH-TCEEEEEESCHHHHHHHCSE
T ss_pred HHHHHHHHhc-CCEEEEECCCHHHHHHhCCE
Confidence 9999987653 7899999999853 345543
No 107
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.53 E-value=7.2e-15 Score=143.14 Aligned_cols=148 Identities=22% Similarity=0.310 Sum_probs=106.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (573)
+.. ++++|+|||||||||+++.+ .+++.++.. ....+.++++++.+.....+++.+++......
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~ 100 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVER 100 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCH
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCC
Confidence 457 89999999999999999843 233332211 11123466778777666777888887542210
Q ss_pred --------cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHH
Q 008221 143 --------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLK 212 (573)
Q Consensus 143 --------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~ 212 (573)
.....+|. ....+..+..+|+|++||+.++++++.+|++++||| +++|......++++++++.+
T Consensus 101 ~~~~~~~~~~l~~~~l------~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 174 (240)
T 2onk_A 101 VERDRRVREMAEKLGI------AHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174 (240)
T ss_dssp HHHHHHHHHHHHTTTC------TTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCC------HHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 11111221 122356778899999999999999999999999999 88999999999999999865
Q ss_pred hCCCcEEEEecccccH-HHHHc
Q 008221 213 NRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 213 ~~~~~~iil~SATl~~-~~~~~ 233 (573)
.. +..+|++||.++. ..+++
T Consensus 175 ~~-g~tvi~vtHd~~~~~~~~d 195 (240)
T 2onk_A 175 EF-DVPILHVTHDLIEAAMLAD 195 (240)
T ss_dssp HH-TCCEEEEESCHHHHHHHCS
T ss_pred hc-CCEEEEEeCCHHHHHHhCC
Confidence 43 6789999999863 44554
No 108
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.52 E-value=2.3e-14 Score=141.90 Aligned_cols=149 Identities=21% Similarity=0.267 Sum_probs=103.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChhhcCceEEEEecC-cccccccHHHHHHHhhhhccc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQP-RRVAAMSVSRRVAEEMDVTIG 145 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~~~~~~~i~~t~p-~~~~~~~v~~~v~~~~~~~~~ 145 (573)
+..|++++|+|||||||||+++.+. +++.++......+.+.++++.| ..+...++.+++.........
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~ 109 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP 109 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCC
Confidence 5689999999999999999998432 2232211111234577888876 345567898888653211000
Q ss_pred -----chhceeeeeccc---ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCC
Q 008221 146 -----EEVGYSIRFEDC---SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (573)
Q Consensus 146 -----~~vg~~~~~~~~---~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~ 215 (573)
..+......... ...+..+..+|+|++||+.++++++.+|++++||| +++|......++++++++.+.
T Consensus 110 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-- 187 (266)
T 2yz2_A 110 DRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-- 187 (266)
T ss_dssp TSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc--
Confidence 001000011111 12356678899999999999999999999999999 889999999999999998654
Q ss_pred CcEEEEecccccH
Q 008221 216 DLKLVVMSATLEA 228 (573)
Q Consensus 216 ~~~iil~SATl~~ 228 (573)
+..+|++||.++.
T Consensus 188 g~tii~vtHd~~~ 200 (266)
T 2yz2_A 188 GKTVILISHDIET 200 (266)
T ss_dssp TCEEEEECSCCTT
T ss_pred CCEEEEEeCCHHH
Confidence 7899999999853
No 109
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.51 E-value=6.6e-14 Score=137.52 Aligned_cols=153 Identities=15% Similarity=0.182 Sum_probs=106.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChh---hcCceEEEEecCcccccccHHHHHHHhhhhc----------c
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPD---RRRKMMIACTQPRRVAAMSVSRRVAEEMDVT----------I 144 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~---~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~----------~ 144 (573)
+..|++++|+|||||||||+++.+. +....... ..+.+.++++.+......++.+++....... .
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 105 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLL--GIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD 105 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHT--TSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHH
Confidence 5789999999999999999998653 22111111 1245778888776666778988886532100 0
Q ss_pred cchhceee-eecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEE
Q 008221 145 GEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVV 221 (573)
Q Consensus 145 ~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil 221 (573)
...+.... .+.-....+..+..+|+|++||+.++++++.+|+++|||| +++|......+.++++++.+.. +..+|+
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tvi~ 184 (253)
T 2nq2_C 106 YQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ-NMTVVF 184 (253)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS-CCEEEE
T ss_pred HHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEE
Confidence 00010000 0111122356678899999999999999999999999999 8899999999999999986543 689999
Q ss_pred ecccccH-HHHHc
Q 008221 222 MSATLEA-EKFQG 233 (573)
Q Consensus 222 ~SATl~~-~~~~~ 233 (573)
+||.++. ..+++
T Consensus 185 vtHd~~~~~~~~d 197 (253)
T 2nq2_C 185 TTHQPNQVVAIAN 197 (253)
T ss_dssp EESCHHHHHHHCS
T ss_pred EecCHHHHHHhCC
Confidence 9998854 34444
No 110
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.50 E-value=2.2e-14 Score=142.81 Aligned_cols=142 Identities=23% Similarity=0.246 Sum_probs=101.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCC--C---hhhcCceEEEEecCcccc--cccHHHHHHHh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIE--T---PDRRRKMMIACTQPRRVA--AMSVSRRVAEE 139 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~--~---~~~~~~~~i~~t~p~~~~--~~~v~~~v~~~ 139 (573)
+..|++++|+|||||||||+++.+ .+++.++. . ....+.+.++++.+.... .+++.+++...
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~ 123 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISG 123 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhh
Confidence 678999999999999999999833 33443322 1 112345777777654322 34888887532
Q ss_pred hh-----------------hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH
Q 008221 140 MD-----------------VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (573)
Q Consensus 140 ~~-----------------~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~ 200 (573)
.. ......+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~ 197 (279)
T 2ihy_A 124 AFKSIGVYQDIDDEIRNEAHQLLKLVGMS------AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIAR 197 (279)
T ss_dssp C---------CCHHHHHHHHHHHHHTTCG------GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHH
T ss_pred hhhccccccCCcHHHHHHHHHHHHHcCCh------hHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHH
Confidence 10 0011112211 22356778899999999999999999999999999 88999999
Q ss_pred HHHHHHHHHHHHhCCCcEE--EEeccccc
Q 008221 201 DVLFGLLKEVLKNRPDLKL--VVMSATLE 227 (573)
Q Consensus 201 d~ll~~l~~l~~~~~~~~i--il~SATl~ 227 (573)
..++++++++.+. +..+ |++||.++
T Consensus 198 ~~l~~~l~~l~~~--g~tv~~iivtHd~~ 224 (279)
T 2ihy_A 198 ESLLSILDSLSDS--YPTLAMIYVTHFIE 224 (279)
T ss_dssp HHHHHHHHHHHHH--CTTCEEEEEESCGG
T ss_pred HHHHHHHHHHHHC--CCEEEEEEEecCHH
Confidence 9999999998665 6788 99999875
No 111
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.50 E-value=2.7e-14 Score=139.85 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=106.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh---
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD--- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~--- 141 (573)
+..|+.++|+|||||||||+++.+. +++.++.. ....+.+.++++.+......++.+++.....
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 102 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKT 102 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCC
Confidence 5689999999999999999998432 22211110 0112347788888776667789988864211
Q ss_pred -----hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCc-------EEEEeC--CCcCcccHHHHHHHH
Q 008221 142 -----VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYK-------VIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 142 -----~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~-------~lILDE--a~~r~~~~d~ll~~l 207 (573)
......+|.. ...+..+..+|+|++||+.++++++.+++ +++||| +++|......+.+++
T Consensus 103 ~~~~~~~~l~~~~l~------~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l 176 (249)
T 2qi9_C 103 RTELLNDVAGALALD------DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 176 (249)
T ss_dssp CHHHHHHHHHHTTCG------GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCh------hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHH
Confidence 0111122221 22356678899999999999999999999 999999 889999999999999
Q ss_pred HHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 208 KEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
+++.+. +..+|++||.++. ..+++
T Consensus 177 ~~l~~~--g~tviivtHd~~~~~~~~d 201 (249)
T 2qi9_C 177 SALSQQ--GLAIVMSSHDLNHTLRHAH 201 (249)
T ss_dssp HHHHHT--TCEEEEECSCHHHHHHHCS
T ss_pred HHHHhC--CCEEEEEeCCHHHHHHhCC
Confidence 998654 7899999998764 34443
No 112
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.48 E-value=4.7e-14 Score=139.97 Aligned_cols=149 Identities=20% Similarity=0.219 Sum_probs=102.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhhc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (573)
+..|++++|+|||||||||+++.+ .+++.++.. ....+.+.++++.+.... .++.+++.......
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~ 120 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT 120 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC
Confidence 678999999999999999999843 233332211 111235778888876554 58888886422100
Q ss_pred -----c---cchhceee---ee--cccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 144 -----I---GEEVGYSI---RF--EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 144 -----~---~~~vg~~~---~~--~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
. ....+... .+ .-....+..+..+|+|++||+.++++++.+|++|+||| +++|......++++++
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~ 200 (271)
T 2ixe_A 121 PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLY 200 (271)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 0 00011000 00 00112345677899999999999999999999999999 8888888889999888
Q ss_pred HHHHhCCCcEEEEecccccH
Q 008221 209 EVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~ 228 (573)
++.+.. +..+|++||.++.
T Consensus 201 ~~~~~~-g~tviivtHd~~~ 219 (271)
T 2ixe_A 201 ESPEWA-SRTVLLITQQLSL 219 (271)
T ss_dssp HCTTTT-TSEEEEECSCHHH
T ss_pred HHHhhc-CCEEEEEeCCHHH
Confidence 865432 7899999998753
No 113
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.48 E-value=8.3e-14 Score=136.33 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=102.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
+..|+.++|+|||||||||+++.+ .+++.++.. ....+.+.++++.+.... .++.+++......
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~ 110 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGM 110 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCTTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCCCC
Confidence 568999999999999999999843 334433221 111235778888776554 5888888532110
Q ss_pred ------cccchhceeeeecc-----cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 143 ------TIGEEVGYSIRFED-----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 143 ------~~~~~vg~~~~~~~-----~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
.....+|....... .......+..+|+|++||+.++++++.+|++++||| +++|......+++++++
T Consensus 111 ~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 190 (247)
T 2ff7_A 111 SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 190 (247)
T ss_dssp CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 01111222110000 011234467899999999999999999999999999 88999999999999998
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
+ .. +..+|++||.++.
T Consensus 191 ~-~~--g~tviivtH~~~~ 206 (247)
T 2ff7_A 191 I-CK--GRTVIIIAHRLST 206 (247)
T ss_dssp H-HT--TSEEEEECSSGGG
T ss_pred H-cC--CCEEEEEeCCHHH
Confidence 8 33 7899999999863
No 114
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.46 E-value=5.1e-14 Score=138.18 Aligned_cols=143 Identities=20% Similarity=0.242 Sum_probs=95.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh-------------cCccCCC--h-h-hcCceEEEEecCcccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL-------------EGVDIET--P-D-RRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll-------------~~~~~~~--~-~-~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
+..|++++|+|||||||||+++.+.- ++.++.. . . ....+.++++.+.....+++.+++....
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 105 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLAL 105 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHH
Confidence 56899999999999999999885432 1111111 0 0 1123456677776666678877764321
Q ss_pred ----hh------------cccchhceeeeecccccccccccc-cCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHH
Q 008221 141 ----DV------------TIGEEVGYSIRFEDCSSARTVLKY-LTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (573)
Q Consensus 141 ----~~------------~~~~~vg~~~~~~~~~~~~~~i~~-lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d 201 (573)
+. .....+|+. ....+..+.. +|+|++||+.++++++.+|+++|||| +++|.....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~gl~-----~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~ 180 (250)
T 2d2e_A 106 QAKLGREVGVAEFWTKVKKALELLDWD-----ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180 (250)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHTCC-----GGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHH
T ss_pred HhhccccCCHHHHHHHHHHHHHHcCCC-----hhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 10 011111210 0123456677 99999999999999999999999999 889999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 202 VLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 202 ~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
.++++++++.+ .+..+|++||.++
T Consensus 181 ~l~~~l~~l~~--~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 181 VVARGVNAMRG--PNFGALVITHYQR 204 (250)
T ss_dssp HHHHHHHHHCS--TTCEEEEECSSSG
T ss_pred HHHHHHHHHHh--cCCEEEEEecCHH
Confidence 99999988743 2789999999875
No 115
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.44 E-value=1.1e-13 Score=139.25 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=102.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
+..|+.++|+|||||||||++..+ .+++.++.. ...++.+.++++.|..+ ..++.+++......
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Tv~eNi~~~~~~~ 155 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-NDTIADNIRYGRVTA 155 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCC-SEEHHHHHHTTSTTC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccC-cccHHHHHHhhcccC
Confidence 578999999999999999998833 344444322 12234688888888665 45898888542210
Q ss_pred ------cccchhceeeeeccc-----ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 143 ------TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 143 ------~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
.....++........ .........+|+|++||+.++++++.++++||||| +++|......+++.+++
T Consensus 156 ~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~ 235 (306)
T 3nh6_A 156 GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235 (306)
T ss_dssp CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 111111111000000 11123446799999999999999999999999999 78888888889988888
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
+.+ +.++|++||.++.
T Consensus 236 l~~---~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 236 VCA---NRTTIVVAHRLST 251 (306)
T ss_dssp HHT---TSEEEEECCSHHH
T ss_pred HcC---CCEEEEEEcChHH
Confidence 743 5799999998864
No 116
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.43 E-value=7.6e-14 Score=136.43 Aligned_cols=147 Identities=16% Similarity=0.248 Sum_probs=100.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
+..|+.++|+|||||||||++..+ .+++.++.. ....+.+.++++.+.... .++.+++......
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~ 103 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGD 103 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhccCC
Confidence 578999999999999999999843 233332211 111235678888776554 4888877432100
Q ss_pred -------cccchhceeeeeccc-----ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 143 -------TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 143 -------~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
.....+|.....+.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+.+.++
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~ 183 (243)
T 1mv5_A 104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183 (243)
T ss_dssp SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 011112221100000 01133466899999999999999999999999999 8899999999999999
Q ss_pred HHHHhCCCcEEEEecccccH
Q 008221 209 EVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~ 228 (573)
++. . +.++|++||.++.
T Consensus 184 ~~~-~--~~tvi~vtH~~~~ 200 (243)
T 1mv5_A 184 SLM-K--GRTTLVIAHRLST 200 (243)
T ss_dssp HHH-T--TSEEEEECCSHHH
T ss_pred Hhc-C--CCEEEEEeCChHH
Confidence 885 3 7899999998763
No 117
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.43 E-value=3.8e-12 Score=140.91 Aligned_cols=126 Identities=15% Similarity=0.065 Sum_probs=90.3
Q ss_pred hcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhh
Q 008221 62 RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (573)
Q Consensus 62 ~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (573)
.|+ .++++|...++.+.+|+ +..+.||||||..+..+++.... . ..+..++.|++.++.+.......+...++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL-~---G~qv~VvTPTreLA~Qdae~m~~l~~~lG 148 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL-T---GKGVHVVTVNDYLARRDAEWMGPVYRGLG 148 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT-T---CSCCEEEESSHHHHHHHHHHHHHHHHTTT
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH-h---CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 466 77999999999999999 67999999999988776642221 1 12467788888888777777777888778
Q ss_pred hcccchhceeeeecccccccccccccCHHHH-HHHHhccc-------ccC---CCcEEEEeCCC
Q 008221 142 VTIGEEVGYSIRFEDCSSARTVLKYLTDGML-LREAMTDP-------LLE---RYKVIVLDEAH 194 (573)
Q Consensus 142 ~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l-~r~~~~~~-------ll~---~~~~lILDEa~ 194 (573)
.+++..+|..............|.+.|+|++ .+++..+. .+. +..++|+||+|
T Consensus 149 Lsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 149 LSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp CCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred CeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 7777666643211111122457889999999 45554331 266 78999999987
No 118
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.42 E-value=1.6e-13 Score=135.90 Aligned_cols=144 Identities=15% Similarity=0.181 Sum_probs=98.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh-------------cCccCCC--h-hh-cCceEEEEecCcccccccHHHHHHHhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL-------------EGVDIET--P-DR-RRKMMIACTQPRRVAAMSVSRRVAEEM 140 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll-------------~~~~~~~--~-~~-~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (573)
+..|++++|+|||||||||+++.+.- ++.++.. . .. ...+.++++.+.....+++.+++....
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~ 122 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL 122 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHH
Confidence 57899999999999999999885431 1111110 0 00 123667888777666677776654311
Q ss_pred -------hh-------------cccchhceeeeeccccccccccc-ccCHHHHHHHHhcccccCCCcEEEEeC--CCcCc
Q 008221 141 -------DV-------------TIGEEVGYSIRFEDCSSARTVLK-YLTDGMLLREAMTDPLLERYKVIVLDE--AHERT 197 (573)
Q Consensus 141 -------~~-------------~~~~~vg~~~~~~~~~~~~~~i~-~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~ 197 (573)
+. .....+|+. ....+..+. .+|+|++||+.++++++.+|+++|||| +++|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~ 197 (267)
T 2zu0_C 123 NAVRSYRGQETLDRFDFQDLMEEKIALLKMP-----EDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 197 (267)
T ss_dssp HHHHHGGGCCCCCHHHHHHHHHHHHHHTTCC-----TTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCH
T ss_pred HhhhhhhccccCCHHHHHHHHHHHHHHcCCC-----hhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence 00 001111211 012244555 499999999999999999999999999 88998
Q ss_pred ccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 198 LATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 198 ~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
.....++++++++.+ .+..+|++||.++.
T Consensus 198 ~~~~~l~~~l~~l~~--~g~tviivtHd~~~ 226 (267)
T 2zu0_C 198 DALKVVADGVNSLRD--GKRSFIIVTHYQRI 226 (267)
T ss_dssp HHHHHHHHHHHTTCC--SSCEEEEECSSGGG
T ss_pred HHHHHHHHHHHHHHh--cCCEEEEEeeCHHH
Confidence 999999998887633 27899999998753
No 119
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.41 E-value=1.7e-13 Score=135.10 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=100.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh----------hcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (573)
+..|+.++|+|||||||||+++.+. +++.++.. ....+.+.++++.|..+. .++.+++......
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~ 121 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKLDAT 121 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCTTCC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCCCCC
Confidence 5789999999999999999998432 23322211 112345788888876654 5888888542100
Q ss_pred --c---ccchhceeeeecccc-----cccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHH
Q 008221 143 --T---IGEEVGYSIRFEDCS-----SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (573)
Q Consensus 143 --~---~~~~vg~~~~~~~~~-----~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l 210 (573)
. ....++......... ..+..+..+|+|++||+.++++++.+|+++|||| +++|......+.++++++
T Consensus 122 ~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 122 DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 0 011112111000000 1124567899999999999999999999999999 889989999999999887
Q ss_pred HHhCCCcEEEEecccccH
Q 008221 211 LKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 211 ~~~~~~~~iil~SATl~~ 228 (573)
. . +.++|++||.++.
T Consensus 202 ~-~--~~tviivtH~~~~ 216 (260)
T 2ghi_A 202 R-K--NRTLIIIAHRLST 216 (260)
T ss_dssp T-T--TSEEEEECSSGGG
T ss_pred c-C--CCEEEEEcCCHHH
Confidence 3 2 6799999998763
No 120
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.41 E-value=2.2e-13 Score=135.29 Aligned_cols=129 Identities=17% Similarity=0.111 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCC
Q 008221 260 RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSK 339 (573)
Q Consensus 260 ~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~ 339 (573)
..++..+.+.+..+.. ...++|||+.....++.+...|.... ++.+..+||++++.+|.++++.|..+..
T Consensus 95 s~K~~~L~~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 164 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPS 164 (271)
T ss_dssp CHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHh--CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCC
Confidence 3455555555544432 45689999999999999999997631 5678889999999999999999987721
Q ss_pred CCCCCCce-EEEeecccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCC-C--CCeEEec
Q 008221 340 EGGPPGRK-IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-Q--PGKCFRL 415 (573)
Q Consensus 340 ~~~~~~~k-vllaT~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~-~--~G~~~~l 415 (573)
.+ +|+||+++++|||++++++||+++. |-+.+.|.||+||++|. + +-.+|+|
T Consensus 165 ------~~v~L~st~~~g~Glnl~~a~~VI~~d~------------------~wnp~~~~Q~~gR~~R~Gq~~~v~v~~l 220 (271)
T 1z5z_A 165 ------VKFIVLSVKAGGFGINLTSANRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKL 220 (271)
T ss_dssp ------CCEEEEECCTTCCCCCCTTCSEEEECSC------------------CSCTTTC--------------CCEEEEE
T ss_pred ------CCEEEEehhhhcCCcCcccCCEEEEECC------------------CCChhHHHHHHHhccccCCCCceEEEEE
Confidence 34 7999999999999999999999998 88999999999999998 3 4457999
Q ss_pred cchhhhh
Q 008221 416 YTEKSFN 422 (573)
Q Consensus 416 ~t~~~~~ 422 (573)
+++...+
T Consensus 221 i~~~TiE 227 (271)
T 1z5z_A 221 ISVGTLE 227 (271)
T ss_dssp EETTSHH
T ss_pred eeCCCHH
Confidence 9876553
No 121
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.38 E-value=3.2e-13 Score=131.34 Aligned_cols=148 Identities=9% Similarity=0.120 Sum_probs=95.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChh---hcCceEEEEecCcccccccHHHHHHHhhhh------cccchh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPD---RRRKMMIACTQPRRVAAMSVSRRVAEEMDV------TIGEEV 148 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~---~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~------~~~~~v 148 (573)
+..|+.++|+|||||||||+++.+. +....... ....+.++++.|. +...++.+++...... .....+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~p~~G~I~~~g~i~~v~Q~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~ 104 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALL--AEMDKVEGHVAIKGSVAYVPQQAW-IQNDSLRENILFGCQLEEPYYRSVIQAC 104 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT--TCSEEEEEEEEECSCEEEECSSCC-CCSEEHHHHHHTTSCCCTTHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh--cCCCCCCceEEECCEEEEEcCCCc-CCCcCHHHHhhCccccCHHHHHHHHHHH
Confidence 5689999999999999999998653 21101000 0013567777765 4567888888542110 001111
Q ss_pred ceeeeeccc-----ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEE
Q 008221 149 GYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVV 221 (573)
Q Consensus 149 g~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil 221 (573)
+........ ...+..+..+|+|++||+.++++++.+|+++|||| +++|......+++.+.+......+.++|+
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tvii 184 (237)
T 2cbz_A 105 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL 184 (237)
T ss_dssp TCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEE
T ss_pred hhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 110000000 11245677899999999999999999999999999 78887777777777642111112789999
Q ss_pred ecccccH
Q 008221 222 MSATLEA 228 (573)
Q Consensus 222 ~SATl~~ 228 (573)
+||.++.
T Consensus 185 vtH~~~~ 191 (237)
T 2cbz_A 185 VTHSMSY 191 (237)
T ss_dssp ECSCSTT
T ss_pred EecChHH
Confidence 9999864
No 122
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.38 E-value=2.9e-13 Score=133.46 Aligned_cols=137 Identities=17% Similarity=0.184 Sum_probs=94.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh----------cCccCCChhhcCceE-EEEecCcccccccHHHHHHHhhhh----
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL----------EGVDIETPDRRRKMM-IACTQPRRVAAMSVSRRVAEEMDV---- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll----------~~~~~~~~~~~~~~~-i~~t~p~~~~~~~v~~~v~~~~~~---- 142 (573)
+. |+.++|+|||||||||+++.+.- ++.++......+.+. ++++.+.. ..++.+++......
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~ 104 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELKGLD 104 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHTCCC
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhcchH
Confidence 56 99999999999999999985431 111110000123456 66666654 77888887542210
Q ss_pred -----cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCC
Q 008221 143 -----TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (573)
Q Consensus 143 -----~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~ 215 (573)
.....+|+. ....+..+..+|+|++||+.++++++.+|++++||| +++|......+.++++++.
T Consensus 105 ~~~~~~~l~~~gl~-----~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---- 175 (263)
T 2pjz_A 105 RDLFLEMLKALKLG-----EEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---- 175 (263)
T ss_dssp HHHHHHHHHHTTCC-----GGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC----
T ss_pred HHHHHHHHHHcCCC-----hhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc----
Confidence 111122221 012356678899999999999999999999999999 7888888888888877652
Q ss_pred CcEEEEeccccc
Q 008221 216 DLKLVVMSATLE 227 (573)
Q Consensus 216 ~~~iil~SATl~ 227 (573)
. .+|++||.++
T Consensus 176 ~-tviivtHd~~ 186 (263)
T 2pjz_A 176 K-EGILVTHELD 186 (263)
T ss_dssp S-EEEEEESCGG
T ss_pred C-cEEEEEcCHH
Confidence 3 8999999875
No 123
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.36 E-value=4e-13 Score=139.43 Aligned_cols=142 Identities=22% Similarity=0.343 Sum_probs=97.9
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh--
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (573)
.+..|+.++|+|||||||||+++.+ .+++.++.. ....+.+.++++.+..+. .++.+++.....
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~~ 121 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAHS 121 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTCCSC
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhccccC
Confidence 3678999999999999999999843 344443322 112346788888776554 688888742110
Q ss_pred ----hcccchhceeeeeccccccccccc-----------ccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH
Q 008221 142 ----VTIGEEVGYSIRFEDCSSARTVLK-----------YLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (573)
Q Consensus 142 ----~~~~~~vg~~~~~~~~~~~~~~i~-----------~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll 204 (573)
......+|... ..+..+. .+|+|++||++++++++.+|++|+||| +++|......+.
T Consensus 122 ~~~v~~~l~~~~L~~------~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~ 195 (390)
T 3gd7_A 122 DQEIWKVADEVGLRS------VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIR 195 (390)
T ss_dssp HHHHHHHHHHTTCHH------HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHH------HHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 11122233221 1122232 299999999999999999999999999 778877777777
Q ss_pred HHHHHHHHhCCCcEEEEecccccH
Q 008221 205 GLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 205 ~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
..++++ ..+.++|++||.++.
T Consensus 196 ~~l~~~---~~~~tvi~vtHd~e~ 216 (390)
T 3gd7_A 196 RTLKQA---FADCTVILCEARIEA 216 (390)
T ss_dssp HHHHTT---TTTSCEEEECSSSGG
T ss_pred HHHHHH---hCCCEEEEEEcCHHH
Confidence 777764 236899999998753
No 124
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.35 E-value=3.3e-12 Score=138.50 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=104.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC--hhhcCceEEEEecCcccccccHHHHHHHhhhh----------ccc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV----------TIG 145 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~----------~~~ 145 (573)
+..|++++|+|+|||||||+++.+.-....... ......+.++++........++.+++...... .+.
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l 370 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHH
Confidence 568999999999999999999865321111000 01123455666654444456777776542110 111
Q ss_pred chhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEec
Q 008221 146 EEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (573)
Q Consensus 146 ~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~S 223 (573)
..+|.. ...+..+..+|+|++||+.++++++.+|+++|||| +++|......++++++++.+.. +..+|++|
T Consensus 371 ~~~~l~------~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~-g~tvi~vs 443 (538)
T 3ozx_A 371 KRLNLH------RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER-KAVTFIID 443 (538)
T ss_dssp TTTTGG------GCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEEC
T ss_pred HHcCCH------HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEe
Confidence 112211 23456788999999999999999999999999999 8999999999999999987654 78999999
Q ss_pred ccccH-HHHHch
Q 008221 224 ATLEA-EKFQGY 234 (573)
Q Consensus 224 ATl~~-~~~~~~ 234 (573)
|.++. ..+++.
T Consensus 444 Hdl~~~~~~aDr 455 (538)
T 3ozx_A 444 HDLSIHDYIADR 455 (538)
T ss_dssp SCHHHHHHHCSE
T ss_pred CCHHHHHHhCCE
Confidence 99864 345543
No 125
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.34 E-value=6.1e-13 Score=128.73 Aligned_cols=145 Identities=11% Similarity=0.181 Sum_probs=93.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChh---hcCceEEEEecCcccccccHHHHHHHhhhh------cccchh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPD---RRRKMMIACTQPRRVAAMSVSRRVAEEMDV------TIGEEV 148 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~---~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~------~~~~~v 148 (573)
+..|+.++|+|||||||||+++.+. +....... ....+.++++.|.... .++.+++...... ......
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl~~p~~G~i~~~g~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~ 107 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIM--GELEPSEGKIKHSGRISFCSQFSWIMP-GTIKENIIFGVSYDEYRYRSVIKAC 107 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT--TSSCCSEEEEEECSCEEEECSSCCCCS-BCHHHHHHTTSCCCHHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh--CCCcCCccEEEECCEEEEEecCCcccC-CCHHHHhhccCCcChHHHHHHHHHh
Confidence 5689999999999999999998653 22111100 0113667787776555 4888888542110 001111
Q ss_pred ceeeeecccc-----cccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHH-HHHHHHhCCCcEEE
Q 008221 149 GYSIRFEDCS-----SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL-LKEVLKNRPDLKLV 220 (573)
Q Consensus 149 g~~~~~~~~~-----~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~-l~~l~~~~~~~~ii 220 (573)
+......... .....+..+|+|++||+.++++++.+|++++||| +++|......+.+. ++.+. .+..+|
T Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~---~~~tvi 184 (229)
T 2pze_A 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRI 184 (229)
T ss_dssp TCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT---TTSEEE
T ss_pred CcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh---CCCEEE
Confidence 1110011100 1123456899999999999999999999999999 77877777777664 33331 267999
Q ss_pred EecccccH
Q 008221 221 VMSATLEA 228 (573)
Q Consensus 221 l~SATl~~ 228 (573)
++||.++.
T Consensus 185 ~vtH~~~~ 192 (229)
T 2pze_A 185 LVTSKMEH 192 (229)
T ss_dssp EECCCHHH
T ss_pred EEcCChHH
Confidence 99998754
No 126
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.33 E-value=5.5e-12 Score=138.61 Aligned_cols=149 Identities=16% Similarity=0.154 Sum_probs=104.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHh-h-h-------hcccch
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEE-M-D-------VTIGEE 147 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~-~-~-------~~~~~~ 147 (573)
+..|++++|+|||||||||+++.+.-....... -.....+.++++.+......++.+.+... . . ..+...
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 467999999999999999999865421111000 00123567777776554556776555332 0 0 111122
Q ss_pred hceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccc
Q 008221 148 VGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 225 (573)
Q Consensus 148 vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SAT 225 (573)
+|.. ...+..+..+|+|++||+.++++++.+++++|||| +++|......++++++++.+.. +..+|++||+
T Consensus 459 ~~l~------~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vsHd 531 (607)
T 3bk7_A 459 LGII------DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEHD 531 (607)
T ss_dssp HTCT------TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred cCCc------hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 2221 23456788999999999999999999999999999 8999999999999999987543 7899999999
Q ss_pred ccH-HHHHc
Q 008221 226 LEA-EKFQG 233 (573)
Q Consensus 226 l~~-~~~~~ 233 (573)
++. ..+++
T Consensus 532 ~~~~~~~ad 540 (607)
T 3bk7_A 532 VLMIDYVSD 540 (607)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHhCC
Confidence 853 33444
No 127
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.31 E-value=7.4e-12 Score=136.02 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=102.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHh-h-h-------hcccch
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEE-M-D-------VTIGEE 147 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~-~-~-------~~~~~~ 147 (573)
+..|++++|+|+|||||||+++.+.=....... -.....+.++++.+......++.+.+... . . ..+...
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 467999999999999999999865421111000 00123466777766544556775554322 0 0 011122
Q ss_pred hceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccc
Q 008221 148 VGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 225 (573)
Q Consensus 148 vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SAT 225 (573)
+|. ....+..+..+|+|++||+.++++++.+++++|||| +++|......++++++++.+.. +..+|++||+
T Consensus 389 ~~l------~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vsHd 461 (538)
T 1yqt_A 389 LGI------IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEHD 461 (538)
T ss_dssp TTC------GGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSC
T ss_pred cCC------hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 221 123456788999999999999999999999999999 8999999999999999986533 6899999998
Q ss_pred ccH-HHHHc
Q 008221 226 LEA-EKFQG 233 (573)
Q Consensus 226 l~~-~~~~~ 233 (573)
++. ..+++
T Consensus 462 ~~~~~~~~d 470 (538)
T 1yqt_A 462 VLMIDYVSD 470 (538)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHhCC
Confidence 853 34444
No 128
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.29 E-value=3.1e-12 Score=141.28 Aligned_cols=148 Identities=23% Similarity=0.286 Sum_probs=102.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
+..|+.++|+|||||||||+++. +.+++.++.. ...++.+.+++++|.... .++.+++......
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~ 445 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP 445 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc
Confidence 57899999999999999999883 3344444322 112345788888887665 5899988642211
Q ss_pred ---------cccchhceeeeecccc-cccc----cccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHH
Q 008221 143 ---------TIGEEVGYSIRFEDCS-SART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (573)
Q Consensus 143 ---------~~~~~vg~~~~~~~~~-~~~~----~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~ 206 (573)
.....+|.....+... ..++ ....+|+|++||+.++++++.++++++||| +++|......+.+.
T Consensus 446 ~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~ 525 (595)
T 2yl4_A 446 SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEA 525 (595)
T ss_dssp TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHH
Confidence 0111122111011111 1122 236799999999999999999999999999 78888888889988
Q ss_pred HHHHHHhCCCcEEEEecccccHH
Q 008221 207 LKEVLKNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 207 l~~l~~~~~~~~iil~SATl~~~ 229 (573)
++++.+ +.++|++||.++.-
T Consensus 526 l~~~~~---~~tvi~itH~~~~~ 545 (595)
T 2yl4_A 526 LDRLMD---GRTVLVIAHRLSTI 545 (595)
T ss_dssp HHHHHT---TSEEEEECCCHHHH
T ss_pred HHHHhc---CCEEEEEecCHHHH
Confidence 888754 57999999998643
No 129
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.28 E-value=2.4e-12 Score=122.75 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=89.4
Q ss_pred HhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC--hhhcCceEEEEecCcccccccHHHHHHH
Q 008221 61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (573)
Q Consensus 61 ~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (573)
.....+++++|.++++.+.+++.+++.+|||+|||+++..++........ ....+.++++|+..+..+. ..+.+..
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~--~~~~~~~ 105 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQL--FRKEFQP 105 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHH--HHHTHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHH--HHHHHHH
Confidence 34567899999999999999999999999999999988766553211000 0012234444433332221 2222222
Q ss_pred hh--hhcccchhceeeeecc--cccccccccccCHHHHHHHHhcc-------cccCCCcEEEEeCCCcCcccHHHHHHHH
Q 008221 139 EM--DVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTD-------PLLERYKVIVLDEAHERTLATDVLFGLL 207 (573)
Q Consensus 139 ~~--~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~-------~ll~~~~~lILDEa~~r~~~~d~ll~~l 207 (573)
.. +..+....|....... .......+.++|++.+.+.+... ..+.++++||+||+|.- ........++
T Consensus 106 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~-~~~~~~~~~~ 184 (216)
T 3b6e_A 106 FLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHT-NKEAVYNNIM 184 (216)
T ss_dssp HHTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHH
T ss_pred HhccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhh-ccCCcHHHHH
Confidence 11 1222222221100000 00113568889999998877654 33788999999999952 2222233333
Q ss_pred HHHHHhC--------------CCcEEEEeccc
Q 008221 208 KEVLKNR--------------PDLKLVVMSAT 225 (573)
Q Consensus 208 ~~l~~~~--------------~~~~iil~SAT 225 (573)
..+.... ++.+++++|||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 3332211 57899999998
No 130
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.28 E-value=5.7e-12 Score=138.75 Aligned_cols=147 Identities=20% Similarity=0.256 Sum_probs=102.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhh--h
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM--D 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--~ 141 (573)
+..|+.++|+|||||||||++..+ .+++.++.. ...++.+.++++.|.... .++.+++.... .
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~ 444 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYARTEE 444 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTTSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCCCC
Confidence 578999999999999999998843 344443322 112345788888887665 48998886432 1
Q ss_pred h------cccchhceeeeeccc-----ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 142 V------TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 142 ~------~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
. .....+|.....+.. .........+|+|++||+.++++++.+++++|||| +++|......+.+.++
T Consensus 445 ~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~ 524 (582)
T 3b60_A 445 YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524 (582)
T ss_dssp CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 0 011112211000000 11123456799999999999999999999999999 7888888888999888
Q ss_pred HHHHhCCCcEEEEecccccH
Q 008221 209 EVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~ 228 (573)
++.+ +.++|++||.++.
T Consensus 525 ~~~~---~~tvi~itH~~~~ 541 (582)
T 3b60_A 525 ELQK---NRTSLVIAHRLST 541 (582)
T ss_dssp HHHT---TSEEEEECSCGGG
T ss_pred HHhC---CCEEEEEeccHHH
Confidence 8742 6899999999863
No 131
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.28 E-value=4.7e-12 Score=139.40 Aligned_cols=147 Identities=16% Similarity=0.220 Sum_probs=100.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (573)
+..|+.++|+|||||||||++.. +.+++.++.. ...++.+.+++++|.... .++.+++.....
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~~~ 444 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-GTIKENLKWGREDA 444 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-EEHHHHHTTTCSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-ccHHHHHhccCCCC
Confidence 57899999999999999999873 3344444322 112345788888887664 488888843211
Q ss_pred --h---cccchhceeeeecc-----cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 142 --V---TIGEEVGYSIRFED-----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 142 --~---~~~~~vg~~~~~~~-----~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
. ......+....... ..........+|+|++||+.++++++.+++++|||| +++|......+.+.+++
T Consensus 445 ~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~ 524 (587)
T 3qf4_A 445 TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR 524 (587)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 0 00111111100000 011234456799999999999999999999999999 78888888888888877
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
+. .+.++|++||.++.
T Consensus 525 ~~---~~~tvi~itH~l~~ 540 (587)
T 3qf4_A 525 YT---KGCTTFIITQKIPT 540 (587)
T ss_dssp HS---TTCEEEEEESCHHH
T ss_pred hC---CCCEEEEEecChHH
Confidence 52 37899999998864
No 132
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.27 E-value=2.9e-12 Score=141.13 Aligned_cols=148 Identities=21% Similarity=0.296 Sum_probs=101.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhh--h
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM--D 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--~ 141 (573)
+..|+.++|+|||||||||+++.+ .+++.++.. ...++.+.++++.|.... .++.+++.... .
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~ 444 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAEGE 444 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCCCC
Confidence 578999999999999999998843 333433221 112346788888887665 48888885422 1
Q ss_pred h------cccchhceeeeeccc-----ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHH
Q 008221 142 V------TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (573)
Q Consensus 142 ~------~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~ 208 (573)
. .....+|.....+.. .........+|+|++||+.++++++.+++++|||| +++|......+.+.++
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~ 524 (582)
T 3b5x_A 445 YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALD 524 (582)
T ss_pred CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 0 011112211000000 11123446799999999999999999999999999 7888888888888888
Q ss_pred HHHHhCCCcEEEEecccccHH
Q 008221 209 EVLKNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 209 ~l~~~~~~~~iil~SATl~~~ 229 (573)
++. .+.++|++||.++.-
T Consensus 525 ~~~---~~~tvi~itH~~~~~ 542 (582)
T 3b5x_A 525 ELQ---KNKTVLVIAHRLSTI 542 (582)
T ss_pred HHc---CCCEEEEEecCHHHH
Confidence 863 278999999988643
No 133
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.27 E-value=2.3e-12 Score=128.87 Aligned_cols=144 Identities=11% Similarity=0.181 Sum_probs=91.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChh---hcCceEEEEecCcccccccHHHHHHHhhhh------cccchh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPD---RRRKMMIACTQPRRVAAMSVSRRVAEEMDV------TIGEEV 148 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~---~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~------~~~~~v 148 (573)
+..|+.++|+|||||||||+++.+. +......+ ....+.++++.+.... .++.+++. .... ......
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~--Gl~~p~~G~I~~~g~i~~v~Q~~~l~~-~tv~enl~-~~~~~~~~~~~~~~~~ 136 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIM--GELEPSEGKIKHSGRISFCSQNSWIMP-GTIKENII-GVSYDEYRYRSVIKAC 136 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHT--TSSCEEEEEEECCSCEEEECSSCCCCS-SBHHHHHH-TTCCCHHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh--cCCCCCCcEEEECCEEEEEeCCCccCc-ccHHHHhh-CcccchHHHHHHHHHh
Confidence 5689999999999999999998643 22111000 0113667777776554 48888886 2210 001111
Q ss_pred ceeeeecccc-----cccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH-HHHHHhCCCcEEE
Q 008221 149 GYSIRFEDCS-----SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL-KEVLKNRPDLKLV 220 (573)
Q Consensus 149 g~~~~~~~~~-----~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l-~~l~~~~~~~~ii 220 (573)
+......... .....+..+|+|++||+.++++++.++++++||| +++|......+++.+ +++ . .+..+|
T Consensus 137 ~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~-~--~~~tvi 213 (290)
T 2bbs_A 137 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL-M--ANKTRI 213 (290)
T ss_dssp TCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC-T--TTSEEE
T ss_pred ChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh-h--CCCEEE
Confidence 2110001100 1122346799999999999999999999999999 788877777777653 333 1 268999
Q ss_pred EecccccH
Q 008221 221 VMSATLEA 228 (573)
Q Consensus 221 l~SATl~~ 228 (573)
++||.++.
T Consensus 214 ivtHd~~~ 221 (290)
T 2bbs_A 214 LVTSKMEH 221 (290)
T ss_dssp EECCCHHH
T ss_pred EEecCHHH
Confidence 99999754
No 134
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.8e-11 Score=134.30 Aligned_cols=147 Identities=13% Similarity=0.109 Sum_probs=99.6
Q ss_pred cCCEEEEEcCCCCchhhhhhhhhhcCccCCC-hhhcCceEEEEecCcccccccHHHHHHHhhhh---------cccchhc
Q 008221 80 ANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV---------TIGEEVG 149 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~---------~~~~~vg 149 (573)
.|++++|+|+|||||||++..+.-....... ......+.++++........++.+.+...... .+...+|
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~ 456 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR 456 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHT
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcC
Confidence 4589999999999999999865321111000 00112355666654443345666655432110 0111122
Q ss_pred eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 150 YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 150 ~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
. ....+..+..+|+|++||+.++++++.++++++||| +++|......+.++++++.+.. +..+|++||.++
T Consensus 457 l------~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~-g~tviivtHdl~ 529 (608)
T 3j16_B 457 I------DDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN-KKTAFIVEHDFI 529 (608)
T ss_dssp S------TTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHH
T ss_pred C------hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 1 123466788999999999999999999999999999 8899999999999999986543 789999999986
Q ss_pred H-HHHHc
Q 008221 228 A-EKFQG 233 (573)
Q Consensus 228 ~-~~~~~ 233 (573)
. ..+++
T Consensus 530 ~~~~~aD 536 (608)
T 3j16_B 530 MATYLAD 536 (608)
T ss_dssp HHHHHCS
T ss_pred HHHHhCC
Confidence 3 34454
No 135
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.26 E-value=7.8e-12 Score=137.49 Aligned_cols=147 Identities=14% Similarity=0.193 Sum_probs=99.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
+..|+.++++|||||||||++.. +.+++.++.. ...++.+.+++++|.... .++.+++......
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~ 442 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRPTA 442 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGCSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCc-ccHHHHHhcCCCCC
Confidence 57899999999999999999873 2344433221 112345788888876655 4888888532110
Q ss_pred ------cccchhceeeeeccc-----ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 143 ------TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 143 ------~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
......+........ .........+|+|++||+.++++++.+|++++||| +++|......+.+.+++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 522 (578)
T 4a82_A 443 TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV 522 (578)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 011111111000000 11123345799999999999999999999999999 78888877788888877
Q ss_pred HHHhCCCcEEEEecccccH
Q 008221 210 VLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~ 228 (573)
+. .+.++|++||.++.
T Consensus 523 ~~---~~~t~i~itH~l~~ 538 (578)
T 4a82_A 523 LS---KDRTTLIVAHRLST 538 (578)
T ss_dssp HT---TTSEEEEECSSGGG
T ss_pred Hc---CCCEEEEEecCHHH
Confidence 63 36799999999864
No 136
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.25 E-value=4.2e-12 Score=140.16 Aligned_cols=151 Identities=20% Similarity=0.242 Sum_probs=102.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (573)
+..|+.++++|||||||||+++.+ .+++.++.. ...++.+.++++.|.... .++.+++.....
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~~~ 456 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNPGA 456 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSSTTC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCCCC
Confidence 578999999999999999998833 344433321 112345788888886554 589998863211
Q ss_pred --h---cccchhceeeeecccc-c----ccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 142 --V---TIGEEVGYSIRFEDCS-S----ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 142 --~---~~~~~vg~~~~~~~~~-~----~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
. .....++.....+... . .......+|+|++||+.++++++.+++++|||| +++|......+.+.+++
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 536 (598)
T 3qf4_B 457 TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK 536 (598)
T ss_dssp CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 0 0111111110001100 0 112234689999999999999999999999999 78888888888888888
Q ss_pred HHHhCCCcEEEEecccccHHHHH
Q 008221 210 VLKNRPDLKLVVMSATLEAEKFQ 232 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~~~~~~ 232 (573)
+. .+.++|++||.++.-..+
T Consensus 537 ~~---~~~t~i~itH~l~~~~~~ 556 (598)
T 3qf4_B 537 LM---EGKTSIIIAHRLNTIKNA 556 (598)
T ss_dssp HH---TTSEEEEESCCTTHHHHC
T ss_pred Hc---CCCEEEEEecCHHHHHcC
Confidence 74 278999999998754333
No 137
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.21 E-value=4.3e-11 Score=130.01 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=60.3
Q ss_pred ccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
.+..+..+|+|++||+.++++++.+|++||||| +++|......++++++++.+. +..+|++||.++
T Consensus 152 ~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~--g~tvi~vsHd~~ 219 (538)
T 1yqt_A 152 LEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE--GKSVLVVEHDLA 219 (538)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHH
Confidence 456788899999999999999999999999999 899999999999999998763 789999999875
No 138
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.21 E-value=4.4e-11 Score=131.44 Aligned_cols=144 Identities=16% Similarity=0.190 Sum_probs=94.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhc-----Cc---------------cCCCh-----hhcCceEEEEecCcccc---
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLE-----GV---------------DIETP-----DRRRKMMIACTQPRRVA--- 128 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~-----~~---------------~~~~~-----~~~~~~~i~~t~p~~~~--- 128 (573)
.+..|++++|+|+|||||||+++.+.-. |. .+... .......+.++......
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 192 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAV 192 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTC
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhc
Confidence 4689999999999999999999854210 10 00000 00011223333211111
Q ss_pred cccHHHHHHHhh----hhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHH
Q 008221 129 AMSVSRRVAEEM----DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDV 202 (573)
Q Consensus 129 ~~~v~~~v~~~~----~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ 202 (573)
..++.+++.... ...+...+|.. ...+..+..+|+|++||+.++++++.+|++|+||| +++|......
T Consensus 193 ~~tv~e~l~~~~~~~~~~~~L~~lgL~------~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~ 266 (607)
T 3bk7_A 193 KGKVRELLKKVDEVGKFEEVVKELELE------NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLK 266 (607)
T ss_dssp CSBHHHHHHHTCCSSCHHHHHHHTTCT------TGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHH
T ss_pred cccHHHHhhhhHHHHHHHHHHHHcCCC------chhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHH
Confidence 125555543211 01122223321 23456788899999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecccccH
Q 008221 203 LFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 203 ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+.++|+++.+. +..+|++||.++.
T Consensus 267 l~~~L~~l~~~--g~tvIivsHdl~~ 290 (607)
T 3bk7_A 267 VARVIRRLANE--GKAVLVVEHDLAV 290 (607)
T ss_dssp HHHHHHHHHHT--TCEEEEECSCHHH
T ss_pred HHHHHHHHHhc--CCEEEEEecChHH
Confidence 99999998764 7899999998763
No 139
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.19 E-value=1.4e-11 Score=134.42 Aligned_cols=127 Identities=15% Similarity=0.156 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCC
Q 008221 264 EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 343 (573)
Q Consensus 264 ~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~ 343 (573)
......+..+.. ..+|.+|||+|+....+.+++.|.. .. +..+|.. ..+.++++.|+.+
T Consensus 370 ~~~~~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~-----------~~-~~~q~~~--~~~~~~l~~f~~~------ 428 (540)
T 2vl7_A 370 PIYSILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG-----------IP-VIEENKK--TRHEEVLELMKTG------ 428 (540)
T ss_dssp HHHHHHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT-----------SC-EEESTTT--CCHHHHHHHHHTS------
T ss_pred HHHHHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc-----------Cc-eEecCCC--CcHHHHHHHHhcC------
Confidence 444555555554 3578899999999999988876632 22 2345553 3466677777653
Q ss_pred CCceEEE--eecccccccccCC----eEEEEcCCcccceeecccC----------Ccccc--eeeeccHhhHHHhccccC
Q 008221 344 PGRKIVV--STNIAETSLTIDG----IVYVIDPGFAKQKVYNPRV----------RVESL--LVSPISKASAHQRSGRAG 405 (573)
Q Consensus 344 ~~~kvll--aT~iae~gitI~~----V~~VId~g~~k~~~~d~~~----------~~~~l--~~~p~s~~~~~qR~GRaG 405 (573)
..|++ +|+.+..|||+|| +++||.+|+--....||.. +.... ...|...-...|-+||.-
T Consensus 429 --~~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~i 506 (540)
T 2vl7_A 429 --KYLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAF 506 (540)
T ss_dssp --CCEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred --CeEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcc
Confidence 35777 8999999999998 8999998884322222211 00000 001222456779999999
Q ss_pred CC--CCCeEE
Q 008221 406 RT--QPGKCF 413 (573)
Q Consensus 406 R~--~~G~~~ 413 (573)
|. -.|..+
T Consensus 507 R~~~D~g~v~ 516 (540)
T 2vl7_A 507 RDPNDYVKIY 516 (540)
T ss_dssp CSTTCCCEEE
T ss_pred cCCCccEEEE
Confidence 98 346544
No 140
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.15 E-value=6.3e-11 Score=134.97 Aligned_cols=138 Identities=19% Similarity=0.210 Sum_probs=94.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCC--hhhcCceEEEEecC-cccccccHHHHHHHhh------hhcccchh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIET--PDRRRKMMIACTQP-RRVAAMSVSRRVAEEM------DVTIGEEV 148 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~--~~~~~~~~i~~t~p-~~~~~~~v~~~v~~~~------~~~~~~~v 148 (573)
+..|+.++|+|+|||||||+++.+.- +. +.. .......+++++++ .....+++.+++.... .......+
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag-G~-i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~l 535 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN-GQ-VDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF 535 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH-TC-STTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC-CC-cCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHc
Confidence 57899999999999999999997652 21 110 00111233333332 2345567777775310 01112222
Q ss_pred ceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccc
Q 008221 149 GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (573)
Q Consensus 149 g~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl 226 (573)
|+. ....+..+..+|+|+++|+.++++++.++++||||| +|+|......+.++|++ . +..+|++||.+
T Consensus 536 gL~-----~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl 605 (986)
T 2iw3_A 536 GFT-----DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDS 605 (986)
T ss_dssp TCC-----HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCH
T ss_pred CCC-----hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----C-CCEEEEEECCH
Confidence 321 012356678899999999999999999999999999 89998888888888876 2 78999999987
Q ss_pred c
Q 008221 227 E 227 (573)
Q Consensus 227 ~ 227 (573)
+
T Consensus 606 ~ 606 (986)
T 2iw3_A 606 V 606 (986)
T ss_dssp H
T ss_pred H
Confidence 5
No 141
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.13 E-value=3.6e-11 Score=143.63 Aligned_cols=146 Identities=22% Similarity=0.348 Sum_probs=98.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhh-----------hhhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIP-----------QFVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~-----------~~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (573)
|..|+.++|+|+|||||||++. .+.++|.++.. ...++.+.++|+.|..+. -++.+|+.-...
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld~~ 1180 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGLDPS 1180 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSSCTT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccCCCC
Confidence 6789999999999999999887 34566666543 234567888998887654 478887642110
Q ss_pred -------hcccchhceeeeecccc-cccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 142 -------VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 142 -------~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
......++...-..... ..++.+ ..+|+|++||+.++|+++.++++||||| +++|......+.+.+
T Consensus 1181 ~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l 1260 (1321)
T 4f4c_A 1181 SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL 1260 (1321)
T ss_dssp TSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 01111122111011111 113333 2489999999999999999999999999 667766666666655
Q ss_pred HHHHHhCCCcEEEEeccccc
Q 008221 208 KEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~ 227 (573)
+++ ..++++|+++|-++
T Consensus 1261 ~~~---~~~~TvI~IAHRLs 1277 (1321)
T 4f4c_A 1261 DRA---REGRTCIVIAHRLN 1277 (1321)
T ss_dssp TTT---SSSSEEEEECSSSS
T ss_pred HHH---cCCCEEEEeccCHH
Confidence 543 34889999999775
No 142
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.11 E-value=1.1e-10 Score=126.44 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=58.8
Q ss_pred ccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
.+..+..+|+|++||+.++++++.+++++|||| +++|......+.++++++.+ +..+|++||.++.
T Consensus 132 ~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~---g~tii~vsHdl~~ 199 (538)
T 3ozx_A 132 WNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK---NKYVIVVDHDLIV 199 (538)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT---TSEEEEECSCHHH
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC---CCEEEEEEeChHH
Confidence 356788899999999999999999999999999 88998989999999998732 7899999999853
No 143
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.09 E-value=4.4e-11 Score=133.92 Aligned_cols=66 Identities=21% Similarity=0.207 Sum_probs=60.1
Q ss_pred cccccccCHHHHHHHHhcccccCCCc--EEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLERYK--VIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~--~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+..+..+|+|++||+.++++++.+|+ +++||| +++|......++++++++.+. +.++|++||.++.
T Consensus 197 ~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 197 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL--GNTLIVVEHDEDT 266 (670)
T ss_dssp TCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT--TCEEEEECCCHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHH
Confidence 46678899999999999999999988 999999 899999999999999998654 7899999999874
No 144
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.06 E-value=1.7e-10 Score=126.54 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=61.6
Q ss_pred ccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHc
Q 008221 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (573)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~ 233 (573)
.+..+..+|+|++||+.++++++.+++++|||| +++|......+..+++++.+. +..+|++||.++. ..+++
T Consensus 215 ~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~--g~tvi~vtHdl~~~~~~~d 289 (608)
T 3j16_B 215 LKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP--TKYVICVEHDLSVLDYLSD 289 (608)
T ss_dssp GGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTT--TCEEEEECSCHHHHHHHCS
T ss_pred hCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCC
Confidence 456788999999999999999999999999999 889988888999999987544 7899999999863 33443
No 145
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.05 E-value=1.9e-10 Score=137.09 Aligned_cols=146 Identities=21% Similarity=0.263 Sum_probs=97.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhhh-
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (573)
+..|+.++|+|+|||||||++..+ .+++.++.. ...++.+.++++.|.... -++.+++......
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~g~~~~ 491 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDV 491 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCS-SCHHHHHHHHCSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCC-ccHHHHHhcCCCCC
Confidence 578999999999999999998743 334433221 112345788888886654 4899888643210
Q ss_pred ---c---ccchhceeeeeccc-----ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 143 ---T---IGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 143 ---~---~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
. .....+........ .........+|+|++||+.++++++.+++++|||| +++|......+...++.
T Consensus 492 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~ 571 (1284)
T 3g5u_A 492 TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571 (1284)
T ss_dssp CHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 0 01111110000000 11123345799999999999999999999999999 77887777777777766
Q ss_pred HHHhCCCcEEEEeccccc
Q 008221 210 VLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~ 227 (573)
+. .+.++|++||.++
T Consensus 572 ~~---~~~t~i~itH~l~ 586 (1284)
T 3g5u_A 572 AR---EGRTTIVIAHRLS 586 (1284)
T ss_dssp HH---TTSEEEEECSCHH
T ss_pred Hc---CCCEEEEEecCHH
Confidence 53 2789999999875
No 146
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.04 E-value=2.3e-10 Score=136.46 Aligned_cols=147 Identities=23% Similarity=0.311 Sum_probs=99.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhh-----------hhhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQ-----------FVLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~-----------~ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (573)
+..|+.++|+|+|||||||++.. +.+++.++.. ...++.+.++++.|... ..++.+++.....
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~~ 1134 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSR 1134 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCCC
Confidence 67899999999999999999873 3455555432 12345688888888544 4688888742110
Q ss_pred -------hcccchhceeeeecccc-cccc----cccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHH
Q 008221 142 -------VTIGEEVGYSIRFEDCS-SART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (573)
Q Consensus 142 -------~~~~~~vg~~~~~~~~~-~~~~----~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l 207 (573)
.......+......... ..++ ....+|+|++||+.++++++.+++++|||| +++|......+.+.+
T Consensus 1135 ~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l 1214 (1284)
T 3g5u_A 1135 VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL 1214 (1284)
T ss_dssp CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 00011111110000100 1122 234699999999999999999999999999 788888777888887
Q ss_pred HHHHHhCCCcEEEEecccccH
Q 008221 208 KEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 208 ~~l~~~~~~~~iil~SATl~~ 228 (573)
++. ..+.++|++||.++.
T Consensus 1215 ~~~---~~~~tvi~isH~l~~ 1232 (1284)
T 3g5u_A 1215 DKA---REGRTCIVIAHRLST 1232 (1284)
T ss_dssp HHH---SSSSCEEEECSCTTG
T ss_pred HHh---CCCCEEEEEecCHHH
Confidence 764 237899999999864
No 147
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.99 E-value=8.2e-10 Score=123.59 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=58.4
Q ss_pred cccccccCHHHHHHHHhcccccCCC---cEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLERY---KVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~---~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+..+..+|+|++||+.++++++.++ ++|+||| +++|......++++++++.+. +.++|++||.++.
T Consensus 538 ~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~--g~tvi~vtHd~~~ 608 (670)
T 3ux8_A 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN--GDTVLVIEHNLDV 608 (670)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECCCHHH
T ss_pred cCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHH
Confidence 4567889999999999999998776 5999999 889999999999999998654 7899999999864
No 148
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.98 E-value=5e-10 Score=133.83 Aligned_cols=146 Identities=19% Similarity=0.314 Sum_probs=97.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCC---hhhcCceEEEEecCcccccccHHHHHHHhhh--
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (573)
+..|+.++|+|++||||||++..+ .+++.++.. ...++.+.+++++|-. ..-++.+|+.....
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~L-f~~TI~eNI~~g~~~~ 519 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPAL-FNCTIEENISLGKEGI 519 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCC-CSEEHHHHHHTTCTTC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCccee-eCCchhHHHhhhcccc
Confidence 578999999999999999998743 344444332 1123457777777754 45688888853221
Q ss_pred --h---cccchhceeeeeccccc-ccccc----cccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHH
Q 008221 142 --V---TIGEEVGYSIRFEDCSS-ARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (573)
Q Consensus 142 --~---~~~~~vg~~~~~~~~~~-~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~ 209 (573)
. ......+...-...... .++.+ ..+|+|++||+.++|+++.+++++|||| +.+|......+.+.++.
T Consensus 520 ~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~ 599 (1321)
T 4f4c_A 520 TREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK 599 (1321)
T ss_dssp CHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence 0 11111111100011111 12222 3589999999999999999999999999 67777777777777777
Q ss_pred HHHhCCCcEEEEeccccc
Q 008221 210 VLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 210 l~~~~~~~~iil~SATl~ 227 (573)
+.+ ++++|+++|.+.
T Consensus 600 ~~~---~~T~iiiaHrls 614 (1321)
T 4f4c_A 600 AAK---GRTTIIIAHRLS 614 (1321)
T ss_dssp HHT---TSEEEEECSCTT
T ss_pred HhC---CCEEEEEcccHH
Confidence 653 689999999875
No 149
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.96 E-value=1.6e-10 Score=115.26 Aligned_cols=149 Identities=11% Similarity=0.088 Sum_probs=86.9
Q ss_pred CCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhh---
Q 008221 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD--- 141 (573)
Q Consensus 65 lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~--- 141 (573)
..++++|.+.++.+..+...++.++||||||.++..++..... .. ..+.++++ |.+..+.+..+.+.+...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~-~~--~~~~lil~---Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-NY--EGKILIIV---PTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHH-HC--SSEEEEEC---SSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHH-cC--CCeEEEEE---CCHHHHHHHHHHHHHhccccc
Confidence 5889999999999888888889999999999987654432111 00 01223333 443333444444443221
Q ss_pred hcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEE
Q 008221 142 VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVV 221 (573)
Q Consensus 142 ~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil 221 (573)
..+....+.... .........+.+.|++.+.+. ....+.+++++|+||+|. +....+..+++.+ .+..++++
T Consensus 186 ~~~~~~~~~~~~-~~~~~~~~~I~v~T~~~l~~~--~~~~~~~~~~vIiDEaH~--~~~~~~~~il~~~---~~~~~~l~ 257 (282)
T 1rif_A 186 AMIKKIGGGASK-DDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHL--ATGKSISSIISGL---NNCMFKFG 257 (282)
T ss_dssp GGEEECSTTCSS-TTCCCTTCSEEEECHHHHTTS--CGGGGGGEEEEEEETGGG--CCHHHHHHHTTTC---TTCCEEEE
T ss_pred ceEEEEeCCCcc-hhhhccCCcEEEEchHHHHhh--HHHHHhhCCEEEEECCcc--CCcccHHHHHHHh---hcCCeEEE
Confidence 111111111100 001113467888999876543 123578889999999996 3333333333322 24789999
Q ss_pred eccccc
Q 008221 222 MSATLE 227 (573)
Q Consensus 222 ~SATl~ 227 (573)
+|||+.
T Consensus 258 lSATp~ 263 (282)
T 1rif_A 258 LSGSLR 263 (282)
T ss_dssp ECSSCC
T ss_pred EeCCCC
Confidence 999984
No 150
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.95 E-value=9.8e-11 Score=107.86 Aligned_cols=137 Identities=12% Similarity=0.092 Sum_probs=77.6
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCccccc-ccHHHHHHHhhhhcccchhceeeeecc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAA-MSVSRRVAEEMDVTIGEEVGYSIRFED 156 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~-~~v~~~v~~~~~~~~~~~vg~~~~~~~ 156 (573)
+..|++++++|+|||||||++.... .+.......... .++++.+..... -.+.+.+..... .....|+....+
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~-~~~~~~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~- 79 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHF-KPTEVISSDFCR--GLMSDDENDQTVTGAAFDVLHYIVS--KRLQLGKLTVVD- 79 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHS-CGGGEEEHHHHH--HHHCSSTTCGGGHHHHHHHHHHHHH--HHHHTTCCEEEE-
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHc-cCCeEEccHHHH--HHhcCcccchhhHHHHHHHHHHHHH--HHHhCCCeEEEE-
Confidence 4679999999999999999999643 111111000000 111222211111 011111111100 011123221111
Q ss_pred cccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcc----------------cHHHHHHHHHHHHHhCCCcE
Q 008221 157 CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTL----------------ATDVLFGLLKEVLKNRPDLK 218 (573)
Q Consensus 157 ~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~----------------~~d~ll~~l~~l~~~~~~~~ 218 (573)
.....++|+++++.+++++..++++++||| +.+|.. ....+.+.++++.+. +..
T Consensus 80 ------~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~--g~t 151 (171)
T 4gp7_A 80 ------ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE--GFR 151 (171)
T ss_dssp ------SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH--TCS
T ss_pred ------CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc--CCc
Confidence 122348899999999999999999999999 444444 335566666666555 789
Q ss_pred EEEecccccH
Q 008221 219 LVVMSATLEA 228 (573)
Q Consensus 219 iil~SATl~~ 228 (573)
+|++||.++.
T Consensus 152 vi~vtH~~~~ 161 (171)
T 4gp7_A 152 YVYILNSPEE 161 (171)
T ss_dssp EEEEECSHHH
T ss_pred EEEEeCCHHH
Confidence 9999999864
No 151
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.88 E-value=3.7e-10 Score=107.32 Aligned_cols=146 Identities=12% Similarity=0.108 Sum_probs=79.5
Q ss_pred cCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhc---CccCCC-------hhhcCceEEEEecCcccccccH
Q 008221 63 KSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLE---GVDIET-------PDRRRKMMIACTQPRRVAAMSV 132 (573)
Q Consensus 63 ~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~---~~~~~~-------~~~~~~~~i~~t~p~~~~~~~v 132 (573)
.+.|-+.-+..++..+..|++++|+|||||||||++..+.-. ...+.. ....+.+.++++.+
T Consensus 4 ~i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 4 VIRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp CCCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred ccccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 345556667778899999999999999999999999855422 111100 00011122233222
Q ss_pred HHHHHHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHH
Q 008221 133 SRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK 212 (573)
Q Consensus 133 ~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~ 212 (573)
.+++... .......+... .........+.. .-|+++|+.++++++.+|+++||||.--. ....+.++++++ .
T Consensus 76 ~enl~~~-~~~~~~~~~~~---~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~--~~~~l~~~l~~l-~ 147 (208)
T 3b85_A 76 NEKIDPY-LRPLHDALRDM---VEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT--TPAQMKMFLTRL-G 147 (208)
T ss_dssp ----CTT-THHHHHHHTTT---SCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC--CHHHHHHHHTTB-C
T ss_pred HHHHHHH-HHHHHHHHHHh---ccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc--cHHHHHHHHHHh-c
Confidence 1111000 00000000000 000000000111 12999999999999999999999994322 667777777776 3
Q ss_pred hCCCcEEEEeccccc
Q 008221 213 NRPDLKLVVMSATLE 227 (573)
Q Consensus 213 ~~~~~~iil~SATl~ 227 (573)
.+..+| +||.++
T Consensus 148 --~g~tii-vtHd~~ 159 (208)
T 3b85_A 148 --FGSKMV-VTGDIT 159 (208)
T ss_dssp --TTCEEE-EEEC--
T ss_pred --CCCEEE-EECCHH
Confidence 267888 999875
No 152
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.80 E-value=1.1e-08 Score=94.70 Aligned_cols=63 Identities=17% Similarity=0.233 Sum_probs=43.7
Q ss_pred cccccccCHHHHHHHHhccc-----ccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEecc
Q 008221 161 RTVLKYLTDGMLLREAMTDP-----LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSA 224 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~-----ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SA 224 (573)
+..+..+|+|+.+++.++++ ++.+++++||||++--..........+.+++.. .+..+|++||
T Consensus 71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~-~~~~~i~~~H 138 (178)
T 1ye8_A 71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD-PNVNVVATIP 138 (178)
T ss_dssp TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC-TTSEEEEECC
T ss_pred cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc-CCCeEEEEEc
Confidence 45567799999999999996 899999999999542112222333444444444 3666888887
No 153
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.79 E-value=2.1e-08 Score=97.22 Aligned_cols=138 Identities=20% Similarity=0.185 Sum_probs=85.9
Q ss_pred CCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhc
Q 008221 64 SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (573)
Q Consensus 64 ~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (573)
...++++|.++++.+.+++.++++|+||+|||.++..++.... .+.++++|+.. .+.+..+.+.. .+..
T Consensus 91 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~-------~~~liv~P~~~---L~~q~~~~~~~-~~~~ 159 (237)
T 2fz4_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELS-------TPTLIVVPTLA---LAEQWKERLGI-FGEE 159 (237)
T ss_dssp CCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSC-------SCEEEEESSHH---HHHHHHHHHGG-GCGG
T ss_pred CCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcC-------CCEEEEeCCHH---HHHHHHHHHHh-CCCC
Confidence 3578899999999999999999999999999998876655421 12344444332 22233333333 2222
Q ss_pred -ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEe
Q 008221 144 -IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (573)
Q Consensus 144 -~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~ 222 (573)
++...| .......+.+.|.+.+.+... .+..++++||+||+|. +....+. .+....+...++++
T Consensus 160 ~v~~~~g-------~~~~~~~i~v~T~~~l~~~~~--~~~~~~~llIiDEaH~--l~~~~~~----~i~~~~~~~~~l~L 224 (237)
T 2fz4_A 160 YVGEFSG-------RIKELKPLTVSTYDSAYVNAE--KLGNRFMLLIFDEVHH--LPAESYV----QIAQMSIAPFRLGL 224 (237)
T ss_dssp GEEEESS-------SCBCCCSEEEEEHHHHHHTHH--HHTTTCSEEEEECSSC--CCTTTHH----HHHHTCCCSEEEEE
T ss_pred eEEEEeC-------CCCCcCCEEEEeHHHHHhhHH--HhcccCCEEEEECCcc--CCChHHH----HHHHhccCCEEEEE
Confidence 211111 112245677888888765433 2346799999999996 3333322 23333456789999
Q ss_pred ccccc
Q 008221 223 SATLE 227 (573)
Q Consensus 223 SATl~ 227 (573)
|||..
T Consensus 225 SATp~ 229 (237)
T 2fz4_A 225 TATFE 229 (237)
T ss_dssp EESCC
T ss_pred ecCCC
Confidence 99985
No 154
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.77 E-value=1.2e-08 Score=116.03 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=57.6
Q ss_pred cccccccCHHHHHHHHhcccccCCC---cEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLERY---KVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~---~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
...+..+|+|++||+.++++++.++ +++|||| +++|......++++|+++... +.++|++||.++.
T Consensus 800 gq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~--G~TVIvI~HdL~~ 870 (916)
T 3pih_A 800 GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR--GNTVIVIEHNLDV 870 (916)
T ss_dssp TCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECCCHHH
T ss_pred cCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHH
Confidence 3456789999999999999998764 7999999 889999999999999998764 7899999999864
No 155
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.69 E-value=2.2e-08 Score=113.45 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=58.1
Q ss_pred cccccccCHHHHHHHHhcccccCC---CcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLER---YKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~---~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+..+..+|+|++||+.++++++.+ ++++|||| +++|......++++|+++... +..+|++||.++.
T Consensus 840 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~--G~TVIvisHdl~~ 910 (972)
T 2r6f_A 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN--GDTVLVIEHNLDV 910 (972)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECCCHHH
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHH
Confidence 456778999999999999999876 59999999 888989999999999998664 7899999999874
No 156
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.69 E-value=2e-08 Score=105.68 Aligned_cols=58 Identities=17% Similarity=0.152 Sum_probs=52.2
Q ss_pred cCHHHHHHHHhcccccCCC--cEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 167 LTDGMLLREAMTDPLLERY--KVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 167 lT~G~l~r~~~~~~ll~~~--~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
+|+|+++++.++++++.++ ++||||| +|+|......+.+.|+++. . +.++|++||.+.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~--~~~vi~itH~~~ 357 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D--TRQVLVVTHLAQ 357 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T--TSEEEEECSCHH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C--CCEEEEEeCcHH
Confidence 6999999999999999999 9999999 7888888899999998875 2 789999999863
No 157
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.68 E-value=1.4e-08 Score=115.70 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=50.2
Q ss_pred cccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
+..+..+|+|+++|+.++++++.++++||||| +++|......+...+++ . +..+|++||.++
T Consensus 896 ~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~----~-g~tVIiISHD~e 959 (986)
T 2iw3_A 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE----F-EGGVIIITHSAE 959 (986)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHS----C-SSEEEEECSCHH
T ss_pred CCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH----h-CCEEEEEECCHH
Confidence 34577899999999999999999999999999 77776666555555543 2 568999999865
No 158
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.68 E-value=2.4e-08 Score=113.48 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=57.9
Q ss_pred cccccccCHHHHHHHHhcccccCC---CcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLER---YKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~---~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+..+..+|+|++||+.++++++.+ ++++|||| +++|......++++|+++... +..+|++||.++.
T Consensus 858 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~--G~TVIvisHdl~~ 928 (993)
T 2ygr_A 858 GQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK--GNTVIVIEHNLDV 928 (993)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECCCHHH
T ss_pred cCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHH
Confidence 456778999999999999999876 59999999 888989999999999998654 7899999999864
No 159
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.65 E-value=3.7e-08 Score=111.26 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=58.9
Q ss_pred cccccccCHHHHHHHHhcccccCC---CcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccHH
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLER---YKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~---~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~~ 229 (573)
+..+..+|+|++||+.++++++.+ ++++|||| .++|......++++++++... +..+|++||.++.-
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~--G~tVIvisHdl~~i 796 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA--GNTVIAVEHKMQVV 796 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECCCHHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHH
Confidence 456778999999999999999885 79999999 888889999999999998765 78999999998643
No 160
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.64 E-value=4.5e-07 Score=99.03 Aligned_cols=123 Identities=13% Similarity=0.120 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCC
Q 008221 261 DYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKE 340 (573)
Q Consensus 261 ~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~ 340 (573)
++.....+.+..+... .+|.+|||+|+....+.+++.+ +..++.=..+++..+..+.|+ ...
T Consensus 376 ~~~~~l~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~~------------~~~v~~q~~~~~~~~~~~~~~---~~~-- 437 (551)
T 3crv_A 376 NMWKRYADYLLKIYFQ-AKANVLVVFPSYEIMDRVMSRI------------SLPKYVESEDSSVEDLYSAIS---ANN-- 437 (551)
T ss_dssp HHHHHHHHHHHHHHHH-CSSEEEEEESCHHHHHHHHTTC------------CSSEEECCSSCCHHHHHHHTT---SSS--
T ss_pred HHHHHHHHHHHHHHHh-CCCCEEEEecCHHHHHHHHHhc------------CCcEEEcCCCCCHHHHHHHHH---hcC--
Confidence 3445566666666543 5678999999999888877521 233333223456555555554 212
Q ss_pred CCCCCceEEEee--cccccccccC---C--eEEEEcCCcccceeeccc-----------CCcccc---eeeeccHhhHHH
Q 008221 341 GGPPGRKIVVST--NIAETSLTID---G--IVYVIDPGFAKQKVYNPR-----------VRVESL---LVSPISKASAHQ 399 (573)
Q Consensus 341 ~~~~~~kvllaT--~iae~gitI~---~--V~~VId~g~~k~~~~d~~-----------~~~~~l---~~~p~s~~~~~q 399 (573)
.-|++|| .-..-|||+| | .+.||=.|+---.. ||. .+.+.. ...| -.-...|
T Consensus 438 -----~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Q 510 (551)
T 3crv_A 438 -----KVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQ 510 (551)
T ss_dssp -----SCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHH
T ss_pred -----CeEEEEEecceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHH
Confidence 4799998 4666699999 3 56776555532222 331 121111 2234 4555678
Q ss_pred hccccCCCC
Q 008221 400 RSGRAGRTQ 408 (573)
Q Consensus 400 R~GRaGR~~ 408 (573)
=+||.=|..
T Consensus 511 a~GRlIR~~ 519 (551)
T 3crv_A 511 AIGRAIRDV 519 (551)
T ss_dssp HHHTTCCST
T ss_pred HhccCccCC
Confidence 889998884
No 161
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.55 E-value=8.6e-08 Score=99.03 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=57.0
Q ss_pred cccccccCHHHHHHHHhccccc------CCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 161 RTVLKYLTDGMLLREAMTDPLL------ERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll------~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+..+..+|+|+.+|+.++++++ .+|++++||| +++|......++++++++... +.++|++||.++.
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~--g~tvi~itH~~~~ 347 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL--NKVIVFITHDREF 347 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGS--SSEEEEEESCHHH
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEecchHH
Confidence 3466789999999999988886 7999999999 889999999999999987543 7899999998864
No 162
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.2e-08 Score=108.32 Aligned_cols=58 Identities=10% Similarity=0.061 Sum_probs=44.4
Q ss_pred ccccCHHHHHHHHhccc--ccCCCcE----EEEeC---CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 164 LKYLTDGMLLREAMTDP--LLERYKV----IVLDE---AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 164 i~~lT~G~l~r~~~~~~--ll~~~~~----lILDE---a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
+..+|+|+++|+.++++ ++.++++ +|||| +++|.. .+.+ .++.+.. +..+++++|+.+
T Consensus 233 ~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l----~~l~~~~-~~tviiVth~~~ 299 (460)
T 2npi_A 233 NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAEL----HHIIEKL-NVNIMLVLCSET 299 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHH----HHHHHHT-TCCEEEEECCSS
T ss_pred hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHH----HHHHHHh-CCCEEEEEccCc
Confidence 56799999999999999 9999999 99999 445544 3333 4443333 567899999876
No 163
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.39 E-value=3.9e-07 Score=92.71 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=70.9
Q ss_pred HHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeec
Q 008221 76 QVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFE 155 (573)
Q Consensus 76 ~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~ 155 (573)
-.+..|+.++|+|+|||||||++..+.-.- . .. .+. +....+.... .. .....+++..
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~-~-~~----~g~-i~i~~~~e~~-~~-----------~~~~~i~~~~--- 223 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFI-P-KE----ERI-ISIEDTEEIV-FK-----------HHKNYTQLFF--- 223 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGS-C-TT----SCE-EEEESSCCCC-CS-----------SCSSEEEEEC---
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCC-c-CC----CcE-EEECCeeccc-cc-----------cchhEEEEEe---
Confidence 356789999999999999999988654211 1 11 122 2222211100 00 0001111110
Q ss_pred ccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccHHHHHc
Q 008221 156 DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQG 233 (573)
Q Consensus 156 ~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~~~~~~ 233 (573)
-+|+.++..+++++..+|+++|+||+-- ..+.+.++.+... +..+++.+|..+....++
T Consensus 224 ------------ggg~~~r~~la~aL~~~p~ilildE~~~-----~e~~~~l~~~~~g--~~tvi~t~H~~~~~~~~d 282 (330)
T 2pt7_A 224 ------------GGNITSADCLKSCLRMRPDRIILGELRS-----SEAYDFYNVLCSG--HKGTLTTLHAGSSEEAFI 282 (330)
T ss_dssp ------------BTTBCHHHHHHHHTTSCCSEEEECCCCS-----THHHHHHHHHHTT--CCCEEEEEECSSHHHHHH
T ss_pred ------------CCChhHHHHHHHHhhhCCCEEEEcCCCh-----HHHHHHHHHHhcC--CCEEEEEEcccHHHHHhh
Confidence 0788999999999999999999999632 2245566665422 346899999987655554
No 164
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.38 E-value=9e-07 Score=87.83 Aligned_cols=138 Identities=14% Similarity=0.186 Sum_probs=75.3
Q ss_pred HHHhcCCEEEEEcCCCCchhhhhhhhhhc---CccCCChh--hcCceEEEEecCcccccccHHHHHHHhhhhcc------
Q 008221 76 QVLKANQVIILVGETGSGKTTQIPQFVLE---GVDIETPD--RRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI------ 144 (573)
Q Consensus 76 ~~i~~g~~v~i~G~tGSGKTT~l~~~ll~---~~~~~~~~--~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~------ 144 (573)
.-+..|++++|.|+|||||||++.++... +....... ....+.++..+.... .+..++.. .+...
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~---~~~~r~~~-~g~~~~~~~~~ 100 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPT---AIHHRLHA-LGAHLSAEERQ 100 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHH---HHHHHHHH-HHTTSCHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHH---HHHHHHHH-HHhhcChhhhh
Confidence 35789999999999999999998866531 11100000 011233333332211 11112211 11100
Q ss_pred --cchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeC--C--CcCcccH---HHHHHHHHHHHHhCC
Q 008221 145 --GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--A--HERTLAT---DVLFGLLKEVLKNRP 215 (573)
Q Consensus 145 --~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a--~~r~~~~---d~ll~~l~~l~~~~~ 215 (573)
...++. . ...+..+..+|+|+++++ .+++.++++||||| + ..+.... ..++..|+.+.+..
T Consensus 101 ~~~~~l~l----~--~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~- 170 (279)
T 1nlf_A 101 AVADGLLI----Q--PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT- 170 (279)
T ss_dssp HHHHHEEE----C--CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH-
T ss_pred hccCceEE----e--ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc-
Confidence 111111 1 112345667899987654 34567899999999 3 3333222 56677777776543
Q ss_pred CcEEEEeccccc
Q 008221 216 DLKLVVMSATLE 227 (573)
Q Consensus 216 ~~~iil~SATl~ 227 (573)
+..+|++||+..
T Consensus 171 g~tvi~i~H~~~ 182 (279)
T 1nlf_A 171 GCSIVFLHHASK 182 (279)
T ss_dssp CCEEEEEEEC--
T ss_pred CCEEEEEecCCC
Confidence 789999999864
No 165
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.37 E-value=4e-07 Score=88.36 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=31.1
Q ss_pred cCCCcEEEEeCC--CcC-----cccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 182 LERYKVIVLDEA--HER-----TLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 182 l~~~~~lILDEa--~~r-----~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
..+++++|+||. .++ ......+..+++.+.+. +..+|++||.++.
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~--g~tii~vtH~~~~ 184 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM--GVTTILTTEAPDP 184 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH--CCEEEEEECCC--
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC--CCeEEEEECCCCC
Confidence 578999999993 222 23344477777777554 8899999998754
No 166
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.37 E-value=8.4e-07 Score=84.92 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=73.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchh--ceeeee
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEV--GYSIRF 154 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~v--g~~~~~ 154 (573)
-+..|+.++|.|+|||||||++..+...... . ...+.++...... ..+..++. ..+....... ... ..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~----~~~v~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~-~~ 88 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLR-D----GDPCIYVTTEESR---DSIIRQAK-QFNWDFEEYIEKKLI-II 88 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHH-H----TCCEEEEESSSCH---HHHHHHHH-HTTCCCGGGBTTTEE-EE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH-C----CCeEEEEEcccCH---HHHHHHHH-HhcchHHHHhhCCEE-EE
Confidence 4567999999999999999999876532211 0 1123333322211 11222221 1111110000 000 00
Q ss_pred ccccc---ccccccccCHHHHHHHHhcccccCCCc--EEEEeCCC--c--CcccHHHHHHHHHHHHHhCCCcEEEEeccc
Q 008221 155 EDCSS---ARTVLKYLTDGMLLREAMTDPLLERYK--VIVLDEAH--E--RTLATDVLFGLLKEVLKNRPDLKLVVMSAT 225 (573)
Q Consensus 155 ~~~~~---~~~~i~~lT~G~l~r~~~~~~ll~~~~--~lILDEa~--~--r~~~~d~ll~~l~~l~~~~~~~~iil~SAT 225 (573)
+.... ........+.+.+++.+.......+++ ++|+||.. . +......++..++++.+.. +..++++||.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~ 167 (235)
T 2w0m_A 89 DALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQY 167 (235)
T ss_dssp ECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-
T ss_pred eccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEecc
Confidence 00000 000011237777766655544456899 99999944 3 4455677788888887654 7899999998
Q ss_pred c
Q 008221 226 L 226 (573)
Q Consensus 226 l 226 (573)
.
T Consensus 168 ~ 168 (235)
T 2w0m_A 168 A 168 (235)
T ss_dssp -
T ss_pred C
Confidence 6
No 167
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.34 E-value=2.7e-07 Score=105.24 Aligned_cols=133 Identities=11% Similarity=0.109 Sum_probs=75.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeeccc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC 157 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~ 157 (573)
+..|++++|+|||||||||+++.+..-... .. ....+|.....+... ..+...+|..
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-aq-----~g~~vpa~~~~i~~~-----------d~i~~~ig~~------ 726 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALITIM-AQ-----IGSYVPAEEATIGIV-----------DGIFTRMGAA------ 726 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHHHH-HH-----HTCCBSSSEEEEECC-----------SEEEEEC---------
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHHHH-hh-----cCccccchhhhhhHH-----------HHHHHhCChH------
Confidence 356899999999999999999965321000 00 000011000000000 0011111211
Q ss_pred ccccccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccHHHHH-HHHHHHHHhCCCcEEEEecccccHHHHHch
Q 008221 158 SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF-GLLKEVLKNRPDLKLVVMSATLEAEKFQGY 234 (573)
Q Consensus 158 ~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll-~~l~~l~~~~~~~~iil~SATl~~~~~~~~ 234 (573)
......+..++.|+.++..+.+. +.++++++||| ++.|+.....+. .+++.+.+.. +..+|+.||.++...+++.
T Consensus 727 d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~-g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 727 DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDV-KSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp -------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTT-CCEEEEECSCGGGGGHHHH
T ss_pred HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhc-CCeEEEEeCcHHHHHHHhh
Confidence 11122334567788887777665 78999999999 667766666665 6777765533 7899999999876666654
Q ss_pred h
Q 008221 235 F 235 (573)
Q Consensus 235 ~ 235 (573)
+
T Consensus 805 ~ 805 (918)
T 3thx_B 805 Y 805 (918)
T ss_dssp T
T ss_pred c
Confidence 4
No 168
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.31 E-value=9.7e-07 Score=89.57 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=54.1
Q ss_pred cccccccCHHHHHHHHhccccc----CCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 161 RTVLKYLTDGMLLREAMTDPLL----ERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll----~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+..+..+|+|+++++.++++++ ..++++|||| +++|......++++++++ . .+.++|++||..+.
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~--~~~~vi~~tH~~~~ 284 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-S--KHTQFIVITHNKIV 284 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-T--TTSEEEEECCCTTG
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c--CCCeEEEEECCHHH
Confidence 3456789999999999999874 6789999999 778888888888888886 2 26899999998643
No 169
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.29 E-value=5.4e-07 Score=90.39 Aligned_cols=132 Identities=18% Similarity=0.248 Sum_probs=75.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCChh---------hcCceEEEEecCc-ccccccHHHHH
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETPD---------RRRKMMIACTQPR-RVAAMSVSRRV 136 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~~---------~~~~~~i~~t~p~-~~~~~~v~~~v 136 (573)
+..|++++++|+|||||||++..+ .+.+.+..... ....+.++++.+. .....++.+++
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l 176 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 176 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHH
Confidence 456889999999999999998732 22333322110 0124667776665 55555666666
Q ss_pred HHhhhh----cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCc--EEEEeCCCcCcccHHHHHHHHHHH
Q 008221 137 AEEMDV----TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYK--VIVLDEAHERTLATDVLFGLLKEV 210 (573)
Q Consensus 137 ~~~~~~----~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~--~lILDEa~~r~~~~d~ll~~l~~l 210 (573)
...... .+...+|.. ...+..+..+| .++..+++++..+|+ ++|+| +-- .++.. ..++.+
T Consensus 177 ~~~~~~~~d~~lldt~gl~------~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts-glD~~---~~~~~~ 242 (302)
T 3b9q_A 177 KRGKEEGYDVVLCDTSGRL------HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT-GLNML---PQAREF 242 (302)
T ss_dssp HHHHHTTCSEEEECCCCCS------SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG-GGGGH---HHHHHH
T ss_pred HHHHHcCCcchHHhcCCCC------cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC-CcCHH---HHHHHH
Confidence 432111 111111110 11223344566 788899999999999 99999 631 12221 234555
Q ss_pred HHhCCCcEEEEecc
Q 008221 211 LKNRPDLKLVVMSA 224 (573)
Q Consensus 211 ~~~~~~~~iil~SA 224 (573)
.+.. +..++++||
T Consensus 243 ~~~~-g~t~iiiTh 255 (302)
T 3b9q_A 243 NEVV-GITGLILTK 255 (302)
T ss_dssp HHHT-CCCEEEEEC
T ss_pred HHhc-CCCEEEEeC
Confidence 4433 788999999
No 170
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.28 E-value=9.5e-08 Score=99.70 Aligned_cols=69 Identities=4% Similarity=0.039 Sum_probs=51.1
Q ss_pred cCHH--HHHHHHhcccccC----------CCcEEEEeC--CCcCcccHHHHHHHHHHHHH----h--CCCcEEEEec-cc
Q 008221 167 LTDG--MLLREAMTDPLLE----------RYKVIVLDE--AHERTLATDVLFGLLKEVLK----N--RPDLKLVVMS-AT 225 (573)
Q Consensus 167 lT~G--~l~r~~~~~~ll~----------~~~~lILDE--a~~r~~~~d~ll~~l~~l~~----~--~~~~~iil~S-AT 225 (573)
+|+| +.+++.+++++.. +++++++|| +++|......+++.++++.. . .+..+++++| |.
T Consensus 155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~ 234 (413)
T 1tq4_A 155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKN 234 (413)
T ss_dssp EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTC
T ss_pred eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCc
Confidence 7888 9999999988877 999999999 78888999999999988852 2 1233555554 44
Q ss_pred cc---HHHHHchh
Q 008221 226 LE---AEKFQGYF 235 (573)
Q Consensus 226 l~---~~~~~~~~ 235 (573)
++ .+.+++++
T Consensus 235 l~~~~~e~L~d~I 247 (413)
T 1tq4_A 235 VCHYDFPVLMDKL 247 (413)
T ss_dssp TTSTTHHHHHHHH
T ss_pred CCccCHHHHHHHH
Confidence 43 56666544
No 171
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.26 E-value=3.3e-08 Score=97.74 Aligned_cols=57 Identities=11% Similarity=0.055 Sum_probs=37.1
Q ss_pred cccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 163 VLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 163 ~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
....+|+|+.+|+.++++++. +++|||........| ..+++.+... ..+|++.+..+
T Consensus 95 ~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD--~~~l~~L~~~---~~vI~Vi~K~D 151 (270)
T 3sop_A 95 LKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD--LEFMKHLSKV---VNIIPVIAKAD 151 (270)
T ss_dssp HHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH--HHHHHHHHTT---SEEEEEETTGG
T ss_pred hHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH--HHHHHHHHhc---CcEEEEEeccc
Confidence 455789999999999988653 999999532112222 4556665433 56777666543
No 172
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.22 E-value=8.6e-07 Score=90.80 Aligned_cols=131 Identities=19% Similarity=0.266 Sum_probs=75.7
Q ss_pred hcCCEEEEEcCCCCchhhhhhhh-----------hhcCccCCChh---------hcCceEEEEecCc-ccccccHHHHHH
Q 008221 79 KANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETPD---------RRRKMMIACTQPR-RVAAMSVSRRVA 137 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~-----------ll~~~~~~~~~---------~~~~~~i~~t~p~-~~~~~~v~~~v~ 137 (573)
..|++++++|+|||||||++..+ .+.+.+..... ....+.++++.+. .....++.+.+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~ 234 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 234 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence 35789999999999999998732 23333322110 1224667776665 555556666664
Q ss_pred Hhhhh----cccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCc--EEEEeCCCcCcccHHHHHHHHHHHH
Q 008221 138 EEMDV----TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYK--VIVLDEAHERTLATDVLFGLLKEVL 211 (573)
Q Consensus 138 ~~~~~----~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~--~lILDEa~~r~~~~d~ll~~l~~l~ 211 (573)
..... .+...+|. ....+..+..+| .++..++++++.+|+ ++||| +-- .++. . ..++.+.
T Consensus 235 ~~~~~~~d~~lldt~Gl------~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptt-glD~--~-~~~~~~~ 300 (359)
T 2og2_A 235 RGKEEGYDVVLCDTSGR------LHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT-GLNM--L-PQAREFN 300 (359)
T ss_dssp HHHHTTCSEEEEECCCC------SSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG-GGGG--H-HHHHHHH
T ss_pred HHHhCCCHHHHHHhcCC------ChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCC-CCCH--H-HHHHHHH
Confidence 32211 11111111 111223344456 788899999999999 99999 531 1221 1 2334554
Q ss_pred HhCCCcEEEEecc
Q 008221 212 KNRPDLKLVVMSA 224 (573)
Q Consensus 212 ~~~~~~~iil~SA 224 (573)
+.. +..+|++||
T Consensus 301 ~~~-g~t~iiiTh 312 (359)
T 2og2_A 301 EVV-GITGLILTK 312 (359)
T ss_dssp HHT-CCCEEEEES
T ss_pred Hhc-CCeEEEEec
Confidence 433 788999999
No 173
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.18 E-value=1.3e-06 Score=100.05 Aligned_cols=129 Identities=16% Similarity=0.075 Sum_probs=70.5
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeecccc
Q 008221 79 KANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS 158 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~ 158 (573)
..|++++|+|||||||||+++++.+-... .. ...++|.....+... ..+...+|..
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ial~~~~-aq-----~G~~vpa~~~~~~~~-----------d~i~~~ig~~------- 715 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTGVIVLM-AQ-----IGCFVPCESAEVSIV-----------DCILARVGAG------- 715 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHHHHHHH-HH-----HTCCBSEEEEEEECC-----------SEEEEECC---------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH-Hh-----cCCccccccccchHH-----------HHHHHhcCch-------
Confidence 46899999999999999999976221100 00 000111111000000 0111112211
Q ss_pred cccccccccCHHHHHHHHhcccc--cCCCcEEEEeC--CCcCcccHHHH-HHHHHHHHHhCCCcEEEEecccccHHHHHc
Q 008221 159 SARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDE--AHERTLATDVL-FGLLKEVLKNRPDLKLVVMSATLEAEKFQG 233 (573)
Q Consensus 159 ~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lILDE--a~~r~~~~d~l-l~~l~~l~~~~~~~~iil~SATl~~~~~~~ 233 (573)
+.....+|.++..+..++..+ +.+++++|||| .+.|+.+...+ ..+++.+.+.. +..+|+.||..+...+++
T Consensus 716 --d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~-g~~vl~aTH~~el~~lad 792 (934)
T 3thx_A 716 --DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKI-GAFCMFATHFHELTALAN 792 (934)
T ss_dssp ---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTT-CCEEEEEESCGGGGGGGG
T ss_pred --hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEcCcHHHHHHhc
Confidence 111223556555555555555 78999999999 56666655555 56667765533 789999999977555554
Q ss_pred h
Q 008221 234 Y 234 (573)
Q Consensus 234 ~ 234 (573)
.
T Consensus 793 ~ 793 (934)
T 3thx_A 793 Q 793 (934)
T ss_dssp T
T ss_pred c
Confidence 4
No 174
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.16 E-value=1.2e-07 Score=89.92 Aligned_cols=54 Identities=17% Similarity=-0.006 Sum_probs=35.3
Q ss_pred cccCCCcEEEEeC--CCc----CcccHHHHHHHHHHHHHhCCCcEEEEecccccH-HHHHch
Q 008221 180 PLLERYKVIVLDE--AHE----RTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (573)
Q Consensus 180 ~ll~~~~~lILDE--a~~----r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~-~~~~~~ 234 (573)
+++.++++++||| ..+ |......+..+++++.+.. +..++++||.++. ..+++.
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQG-DFDKVVVNRRLESACAELVS 197 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGG-GSSEEEECSSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhc-cCcEEEECCCHHHHHHHHHH
Confidence 4567788888888 222 2234456777777776443 6899999999863 445543
No 175
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.14 E-value=2.5e-06 Score=92.46 Aligned_cols=133 Identities=12% Similarity=0.113 Sum_probs=82.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccc--hhceeeee
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGE--EVGYSIRF 154 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~--~vg~~~~~ 154 (573)
.+..|++++|.|+|||||||++.++.-.... . ...+.++..++... ++..+. ...+..... ..|.
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~----G~~vi~~~~ee~~~---~l~~~~-~~~g~~~~~~~~~g~---- 343 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACA-N----KERAILFAYEESRA---QLLRNA-YSWGMDFEEMERQNL---- 343 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHT-T----TCCEEEEESSSCHH---HHHHHH-HTTSCCHHHHHHTTS----
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-C----CCCEEEEEEeCCHH---HHHHHH-HHcCCCHHHHHhCCC----
Confidence 4678999999999999999999977643221 1 11233333343321 222222 111111100 1111
Q ss_pred cccccccccccccCHHHHHHHHhcccccCCCcEEEEeC-CCcCcc-----cHHHHHHHHHHHHHhCCCcEEEEecccc
Q 008221 155 EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE-AHERTL-----ATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (573)
Q Consensus 155 ~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE-a~~r~~-----~~d~ll~~l~~l~~~~~~~~iil~SATl 226 (573)
....+..+..+|+|++++.++++.+..+++++|+|= ..+|.. ....+..+++.+.+. +..+|++||..
T Consensus 344 --~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~--g~tvilvsh~~ 417 (525)
T 1tf7_A 344 --LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQE--EITGLFTNTSD 417 (525)
T ss_dssp --EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECS
T ss_pred --EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhC--CCEEEEEECcc
Confidence 111233456789999999999999999999999993 134444 556677777776543 78999999975
No 176
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.08 E-value=1.7e-05 Score=70.71 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.5
Q ss_pred cCCEEEEEcCCCCchhhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.|+.+++.|++||||||++..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999988553
No 177
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.07 E-value=3.5e-07 Score=92.26 Aligned_cols=113 Identities=9% Similarity=0.012 Sum_probs=66.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhh--hhccc---chhc-ee
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM--DVTIG---EEVG-YS 151 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--~~~~~---~~vg-~~ 151 (573)
+..|++++|.|+|||||||++..+.-.-.. . .....+.++++.+..... ++.+++.... +..-. ..+. ..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~-~--~G~~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L 162 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR-W--DHHPRVDLVTTDGFLYPN-AELQRRNLMHRKGFPESYNRRALMRFV 162 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT-S--TTCCCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc-c--CCCCeEEEEecCccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 578999999999999999999854311000 0 011346677766544333 5554442110 10000 0000 00
Q ss_pred eeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCc
Q 008221 152 IRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHE 195 (573)
Q Consensus 152 ~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~ 195 (573)
..+. ....+..+..+|+|+.+|+.++++++.++++||+||...
T Consensus 163 ~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~ 205 (312)
T 3aez_A 163 TSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNV 205 (312)
T ss_dssp HHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTT
T ss_pred HHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccc
Confidence 0000 011124566799999999999999999999999999653
No 178
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.05 E-value=7.3e-06 Score=84.01 Aligned_cols=50 Identities=18% Similarity=0.072 Sum_probs=34.1
Q ss_pred HhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccHHHHH
Q 008221 176 AMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQ 232 (573)
Q Consensus 176 ~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~~~~~ 232 (573)
.+++++..+|++|++||.- + ......+.++... +..+++.+|+.+.....
T Consensus 188 ~La~aL~~~PdvillDEp~-d----~e~~~~~~~~~~~--G~~vl~t~H~~~~~~~~ 237 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR-D----LETIRLALTAAET--GHLVFGTLHTTSAAKTI 237 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC-S----HHHHHHHHHHHHT--TCEEEEEESCSSHHHHH
T ss_pred HHHHHhhhCcCEEecCCCC-C----HHHHHHHHHHHhc--CCEEEEEEccChHHHHH
Confidence 6778889999999999973 1 1223333333333 77899999998765443
No 179
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.05 E-value=1.1e-05 Score=80.53 Aligned_cols=60 Identities=23% Similarity=0.117 Sum_probs=41.1
Q ss_pred ccCHHHHHHHHhcccccCCCcEEEEeCCCc--------Cc-ccHHHHHHHHHHHHHhCCCcEEEEecccc
Q 008221 166 YLTDGMLLREAMTDPLLERYKVIVLDEAHE--------RT-LATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (573)
Q Consensus 166 ~lT~G~l~r~~~~~~ll~~~~~lILDEa~~--------r~-~~~d~ll~~l~~l~~~~~~~~iil~SATl 226 (573)
..+.+.+++.+.+.++..++++|||||... +. .....+...|+.+.+.. +..+|++||..
T Consensus 129 ~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~-~~~vi~vsh~~ 197 (296)
T 1cr0_A 129 EAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKST-GVVLVVICHLK 197 (296)
T ss_dssp SCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHH-CCEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHh-CCeEEEEEecC
Confidence 357777666555666788999999999332 11 22345677777776554 78999999975
No 180
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.04 E-value=5.5e-06 Score=83.08 Aligned_cols=135 Identities=19% Similarity=0.174 Sum_probs=73.9
Q ss_pred cCCEEEEEcCCCCchhhhhhhhh-----------hcCccCCChh---------hcCceEEEEecCcccccccHHHHHHHh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD---------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~~~~~~~---------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (573)
.|++++++|+|||||||++..+. +.+.+..... ....+.++++.+......++.+++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999988332 2222221100 112345566555444444555555432
Q ss_pred hhhcccchhceee-eecccccccccccccCHHHHHHHHhcccccCCCc--EEEEeCCCcCcccHHHHHHHHHHHHHhCCC
Q 008221 140 MDVTIGEEVGYSI-RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYK--VIVLDEAHERTLATDVLFGLLKEVLKNRPD 216 (573)
Q Consensus 140 ~~~~~~~~vg~~~-~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~--~lILDEa~~r~~~~d~ll~~l~~l~~~~~~ 216 (573)
... ++.. -.+.....+.....++....++..+++++..+|+ +++||... ...++..++.+.+.. +
T Consensus 181 ~~~------~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t-----~~~~~~~~~~~~~~~-~ 248 (304)
T 1rj9_A 181 KAR------GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT-----GQNGLEQAKKFHEAV-G 248 (304)
T ss_dssp HHH------TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB-----CTHHHHHHHHHHHHH-C
T ss_pred HhC------CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHH-----HHHHHHHHHHHHHHc-C
Confidence 111 1110 0111111111222334445678889999999998 67777532 223455556655433 6
Q ss_pred cEEEEecccc
Q 008221 217 LKLVVMSATL 226 (573)
Q Consensus 217 ~~iil~SATl 226 (573)
..++++||..
T Consensus 249 ~t~iivTh~d 258 (304)
T 1rj9_A 249 LTGVIVTKLD 258 (304)
T ss_dssp CSEEEEECTT
T ss_pred CcEEEEECCc
Confidence 7899999974
No 181
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.98 E-value=6.1e-06 Score=95.56 Aligned_cols=123 Identities=15% Similarity=0.068 Sum_probs=70.6
Q ss_pred CCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeecccccc
Q 008221 81 NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA 160 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~ 160 (573)
|++++|+|||||||||+++++-+.... .+...++|+.+. .+++.+++ ...+|.. ...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl~~~~------aqiG~~Vpq~~~---~l~v~d~I--------~~rig~~------d~~ 845 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGLLAVM------AQMGCYVPAEVC---RLTPIDRV--------FTRLGAS------DRI 845 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHH------HTTTCCEESSEE---EECCCSBE--------EEECC-----------
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHH------hheeEEeccCcC---CCCHHHHH--------HHHcCCH------HHH
Confidence 799999999999999999965221110 111124555432 12221111 1112211 011
Q ss_pred cccccccCHHHHHHHHhcccccCCCcEEEEeC--CCcCcccH-HHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT-DVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDE--a~~r~~~~-d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
.......+.+ +.++.++.+++.+++++|||| .+.++.+. ..+..+++.+.+.. +..+|+.||..+.
T Consensus 846 ~~~~stf~~e-m~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~-g~~vl~~TH~~el 914 (1022)
T 2o8b_B 846 MSGESTFFVE-LSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETI-KCRTLFSTHYHSL 914 (1022)
T ss_dssp ----CHHHHH-HHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS-CCEEEEECCCHHH
T ss_pred hhchhhhHHH-HHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH
Confidence 1112223333 445677777899999999999 45555553 44677888876543 7899999998764
No 182
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.95 E-value=2e-05 Score=75.17 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll 103 (573)
-+..|++++|+|||||||||++..+.-
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999997754
No 183
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.94 E-value=1.8e-05 Score=72.70 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=28.9
Q ss_pred cCCCcEEEEeCCC---cCcccHHHHHHHHHHHHHhCCCcEEEEecccc
Q 008221 182 LERYKVIVLDEAH---ERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (573)
Q Consensus 182 l~~~~~lILDEa~---~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl 226 (573)
+.++++|||||.+ .+......+..++...... +..+|+.|+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~--~~~ii~tsn~~ 143 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNN--LKSTIITTNYS 143 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHT--TCEEEEECCCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 3478999999976 3344445566666665433 67888888765
No 184
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.90 E-value=1.7e-05 Score=77.67 Aligned_cols=53 Identities=17% Similarity=0.084 Sum_probs=36.1
Q ss_pred HHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccHHHHHc
Q 008221 174 REAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQG 233 (573)
Q Consensus 174 r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~~~~~~ 233 (573)
+..+++++..+|+++++||.- | .......++.. .. +..+++.+|+.+....++
T Consensus 88 ~~~la~aL~~~p~illlDEp~-D---~~~~~~~l~~~-~~--g~~vl~t~H~~~~~~~~d 140 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR-D---LETVETALRAA-ET--GHLVFGTLHTNTAIDTIH 140 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC-S---HHHHHHHHHHH-HT--TCEEEEEECCSSHHHHHH
T ss_pred HHHHHHHHhhCCCEEEeCCCC-C---HHHHHHHHHHH-cc--CCEEEEEeCcchHHHHHH
Confidence 678888888899999999973 2 22233444432 22 678999999987544443
No 185
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.89 E-value=8.9e-06 Score=75.68 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=31.3
Q ss_pred ccCHHHHHHH-Hhcc---cccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhC
Q 008221 166 YLTDGMLLRE-AMTD---PLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR 214 (573)
Q Consensus 166 ~lT~G~l~r~-~~~~---~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~ 214 (573)
.+++|+.+.+ ++.. +++.+++++||||++--......+++.+++++...
T Consensus 83 ~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 83 DLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp CHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred cchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 3566665554 3333 46889999999997521123335678888887753
No 186
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.87 E-value=3.8e-05 Score=78.57 Aligned_cols=138 Identities=15% Similarity=0.161 Sum_probs=68.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhh-cCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeecc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDR-RRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED 156 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~-~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~ 156 (573)
+..|+++.|.|++||||||++.++............ ...++++-+.+. ... .-...+++..+.... .+...+.+..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~-~~~-~~i~~i~q~~~~~~~-~v~~ni~~~~ 204 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRP-ERIREIAQNRGLDPD-EVLKHIYVAR 204 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC-CCH-HHHHHHHHTTTCCHH-HHGGGEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC-CCH-HHHHHHHHHcCCCHH-HHhhCEEEEe
Confidence 457889999999999999999987654321011000 112234444332 100 111112222221111 1100000000
Q ss_pred cccccccccccCHHHHHHHHhccccc-------CCCcEEEEeC--CCcCccc------------HHHHHHHHHHHHHhCC
Q 008221 157 CSSARTVLKYLTDGMLLREAMTDPLL-------ERYKVIVLDE--AHERTLA------------TDVLFGLLKEVLKNRP 215 (573)
Q Consensus 157 ~~~~~~~i~~lT~G~l~r~~~~~~ll-------~~~~~lILDE--a~~r~~~------------~d~ll~~l~~l~~~~~ 215 (573)
. +-+.++.+.+...+.++ .++++||+|| +..|... ...++..|+.+.+..
T Consensus 205 ~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~- 275 (349)
T 1pzn_A 205 A--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLY- 275 (349)
T ss_dssp C--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred c--------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHc-
Confidence 0 11344444444445554 6899999999 4433321 233455556665554
Q ss_pred CcEEEEeccccc
Q 008221 216 DLKLVVMSATLE 227 (573)
Q Consensus 216 ~~~iil~SATl~ 227 (573)
+..+|+++|...
T Consensus 276 ~~tvii~~h~~~ 287 (349)
T 1pzn_A 276 DIAVFVTNQVQA 287 (349)
T ss_dssp TCEEEEEEECC-
T ss_pred CcEEEEEccccc
Confidence 788999888653
No 187
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.84 E-value=1.9e-05 Score=89.23 Aligned_cols=54 Identities=11% Similarity=0.157 Sum_probs=39.8
Q ss_pred ccCCCcEEEEeC--CCcCcccHHHH-HHHHHHHHHhCCCcEEEEecccccHHHHHchh
Q 008221 181 LLERYKVIVLDE--AHERTLATDVL-FGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF 235 (573)
Q Consensus 181 ll~~~~~lILDE--a~~r~~~~d~l-l~~l~~l~~~~~~~~iil~SATl~~~~~~~~~ 235 (573)
.+.+++++|||| .+.++.+...+ ..+++.+.+.. +..+|+.||..+...+++..
T Consensus 683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~-g~~vl~~TH~~el~~l~d~~ 739 (800)
T 1wb9_A 683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI-KALTLFATHYFELTQLPEKM 739 (800)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTT-CCEEEEECSCGGGGGHHHHS
T ss_pred hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhcc-CCeEEEEeCCHHHHHHhhhh
Confidence 478999999999 45666665554 67777776532 78999999998765566554
No 188
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.81 E-value=1.5e-05 Score=86.39 Aligned_cols=140 Identities=14% Similarity=0.158 Sum_probs=70.9
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccch-----hcee
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEE-----VGYS 151 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~-----vg~~ 151 (573)
.+..|++++|+|+|||||||++.++++.+.... ..+.+++..++... ... ..+...+...... +-..
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~----~~g~i~v~g~~~~~---~~~-~~~~~~g~~~q~~~~~~~l~~~ 106 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF----DEPGVFVTFEETPQ---DII-KNARSFGWDLAKLVDEGKLFIL 106 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH----CCCEEEEESSSCHH---HHH-HHHGGGTCCHHHHHHTTSEEEE
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC----CCCEEEEEEeCCHH---HHH-HHHHHcCCChHHhhccCcEEEE
Confidence 567899999999999999999998765544311 11233333333211 111 1111111100000 0000
Q ss_pred eeecccccccccccccCHHHHHHHHhcccc-cCCCcEEEEeCC--C-----cCcccHHHHHHHHHHHHHhCCCcEEEEec
Q 008221 152 IRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEA--H-----ERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (573)
Q Consensus 152 ~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lILDEa--~-----~r~~~~d~ll~~l~~l~~~~~~~~iil~S 223 (573)
...........+..+.-+.+... ....+ -.+++.++|||+ . +|......++++++.+.+. +.++|++|
T Consensus 107 -~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~--g~tvl~it 182 (525)
T 1tf7_A 107 -DASPDPEGQEVVGGFDLSALIER-INYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQI--GATTVMTT 182 (525)
T ss_dssp -ECCCCSSCCSCCSSHHHHHHHHH-HHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHH--TCEEEEEE
T ss_pred -ecCcccchhhhhcccCHHHHHHH-HHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHC--CCEEEEEe
Confidence 00000000011111111222111 11122 357899999994 2 2445566788888888664 88999999
Q ss_pred ccccH
Q 008221 224 ATLEA 228 (573)
Q Consensus 224 ATl~~ 228 (573)
|.++.
T Consensus 183 H~~~~ 187 (525)
T 1tf7_A 183 ERIEE 187 (525)
T ss_dssp ECSSS
T ss_pred cCCCC
Confidence 99864
No 189
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.81 E-value=3.5e-05 Score=86.51 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=40.4
Q ss_pred cCHHHHHHHHhcccc--cCCCcEEEEeCCCcCcccHH--HH-HHHHHHHHHhCCCcEEEEecccccHH
Q 008221 167 LTDGMLLREAMTDPL--LERYKVIVLDEAHERTLATD--VL-FGLLKEVLKNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 167 lT~G~l~r~~~~~~l--l~~~~~lILDEa~~r~~~~d--~l-l~~l~~l~~~~~~~~iil~SATl~~~ 229 (573)
+|.|+..+..++..+ +.++++++|||...-+...| .. ..++..+... +..+|+.||..+..
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~--g~~vl~~TH~~~l~ 701 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHER--RAYTLFATHYFELT 701 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHH--TCEEEEECCCHHHH
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhC--CCEEEEEeCCHHHH
Confidence 577877777777777 89999999999642222222 22 2344444432 78999999986543
No 190
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.78 E-value=9.4e-05 Score=69.87 Aligned_cols=27 Identities=30% Similarity=0.196 Sum_probs=24.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll 103 (573)
-+..|+.++|.|++||||||++.++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999999998776
No 191
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.74 E-value=4.2e-05 Score=84.28 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhh
Q 008221 68 WQQKEEFLQVLKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 68 ~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+.|.+.++.+..+.++++.|++||||||++..+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~l 184 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKL 184 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHH
Confidence 5679999999999999999999999999987643
No 192
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.73 E-value=2.2e-05 Score=69.89 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=54.9
Q ss_pred cccccccCHHHHHHHHhc------ccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 161 RTVLKYLTDGMLLREAMT------DPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~------~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
+..+..+|+|+++++.++ ++++.++++++||| +++|......+.+.++++.+. +.++|++||..+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiiivsH~~~ 124 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK--IPQVILVSHDEE 124 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG--SSEEEEEESCGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc--CCEEEEEEChHH
Confidence 456778999999999775 77889999999999 788888888888888887544 679999999874
No 193
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.70 E-value=8.6e-05 Score=74.35 Aligned_cols=123 Identities=27% Similarity=0.327 Sum_probs=64.8
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeecccc
Q 008221 79 KANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS 158 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~ 158 (573)
..+++++++|+|||||||++..+...-.. . ...+.++-....+..+......... ..|....
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~----g~kV~lv~~D~~r~~a~eqL~~~~~--------~~gl~~~----- 163 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD-E----GKSVVLAAADTFRAAAIEQLKIWGE--------RVGATVI----- 163 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHH-T----TCCEEEEEECTTCHHHHHHHHHHHH--------HHTCEEE-----
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHh-c----CCEEEEEccccccHHHHHHHHHHHH--------HcCCcEE-----
Confidence 35679999999999999988754321111 0 1234444444444332211111221 1221110
Q ss_pred cccccccccCHHHHHHH---HhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHh-------CCCcEEEEecccc
Q 008221 159 SARTVLKYLTDGMLLRE---AMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN-------RPDLKLVVMSATL 226 (573)
Q Consensus 159 ~~~~~i~~lT~G~l~r~---~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~-------~~~~~iil~SATl 226 (573)
...++|..+++ .++.++..+++++|+||+. +....+.++..++.+... .|+..++.+.|+.
T Consensus 164 ------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 164 ------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp ------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred ------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 01122333333 4555567899999999987 345555666555555432 2454566667764
No 194
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.67 E-value=2.5e-05 Score=75.76 Aligned_cols=136 Identities=13% Similarity=0.102 Sum_probs=68.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhh-cCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcc-c--chhc---
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVL-EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI-G--EEVG--- 149 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll-~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~-~--~~vg--- 149 (573)
.+..|.+++|.|+|||||||++..+.- .+...-. .....+.++++.+ ....+++.+.+....+... . ....
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~-~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVE-QRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHPDAFDNDL 98 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSC-GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSGGGBCHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchhccc-ccCCceEEEeCCc-CccccCHhHhhhhhccCCCCCCcccccHHH
Confidence 456889999999999999999885421 1211000 1123455666653 2334455554432211100 0 0000
Q ss_pred eeeeeccc-ccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEeccc
Q 008221 150 YSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 225 (573)
Q Consensus 150 ~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SAT 225 (573)
........ ......+..+|.|+.+++.+ .+++.+++++|+||.+. .....+ . .. -+.++++.||.
T Consensus 99 ~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~--~~~~~l----~---~~-~~~~i~v~th~ 164 (245)
T 2jeo_A 99 MHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILV--FYSQEI----R---DM-FHLRLFVDTDS 164 (245)
T ss_dssp HHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTT--TTSHHH----H---TT-CSEEEEEECCH
T ss_pred HHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccc--cccHHH----H---Hh-cCeEEEEECCH
Confidence 00000000 11223445577887776644 45677899999999653 222221 1 11 26777777775
No 195
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.62 E-value=1.1e-06 Score=83.96 Aligned_cols=46 Identities=9% Similarity=0.006 Sum_probs=32.8
Q ss_pred ccCHHHHHHHHh-----cccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHH
Q 008221 166 YLTDGMLLREAM-----TDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVL 211 (573)
Q Consensus 166 ~lT~G~l~r~~~-----~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~ 211 (573)
.+++|+.+|..+ ++.++..+++++||| ..++......+...+..+.
T Consensus 122 ~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 122 NINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLN 174 (218)
T ss_dssp CHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 358999999988 667788899999999 4444444555555555543
No 196
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.52 E-value=0.00022 Score=74.11 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=23.8
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhhhcCc
Q 008221 79 KANQVIILVGETGSGKTTQIPQFVLEGV 106 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ll~~~ 106 (573)
..|+++.|.|++||||||++.++.+...
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhc
Confidence 4679999999999999999998766543
No 197
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.50 E-value=0.00021 Score=68.55 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=24.3
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
-+..|++++|.|++||||||++.++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4667999999999999999999987654
No 198
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.45 E-value=0.00035 Score=69.60 Aligned_cols=130 Identities=22% Similarity=0.289 Sum_probs=65.8
Q ss_pred cCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeeccccc
Q 008221 80 ANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS 159 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~ 159 (573)
.+++++++|+||+||||++..+...-.. . ....+.++...+.+..+.......+.. .|....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~---~G~~V~lv~~D~~r~~a~eqL~~~~~~--------~gl~~~------ 165 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML-E---KHKKIAFITTDTYRIAAVEQLKTYAEL--------LQAPLE------ 165 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH-T---TCCCEEEEECCCSSTTHHHHHHHHHTT--------TTCCCC------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-h---cCCEEEEEecCcccchHHHHHHHHHHh--------cCCCeE------
Confidence 5789999999999999988754321110 0 012455665555443332222211111 121100
Q ss_pred ccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHH-hCCCcEEEEeccccc---HHHHHchh
Q 008221 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLE---AEKFQGYF 235 (573)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~-~~~~~~iil~SATl~---~~~~~~~~ 235 (573)
...+++. ++..++. +.+++++|+|.+..+......+.++.+ +.. ..++..++++.+|-. ...+++.|
T Consensus 166 -----~~~~~~~-l~~al~~--~~~~dlvIiDT~G~~~~~~~~~~el~~-~l~~~~~~~~~lVl~at~~~~~~~~~~~~~ 236 (296)
T 2px0_A 166 -----VCYTKEE-FQQAKEL--FSEYDHVFVDTAGRNFKDPQYIDELKE-TIPFESSIQSFLVLSATAKYEDMKHIVKRF 236 (296)
T ss_dssp -----BCSSHHH-HHHHHHH--GGGSSEEEEECCCCCTTSHHHHHHHHH-HSCCCTTEEEEEEEETTBCHHHHHHHTTTT
T ss_pred -----ecCCHHH-HHHHHHH--hcCCCEEEEeCCCCChhhHHHHHHHHH-HHhhcCCCeEEEEEECCCCHHHHHHHHHHH
Confidence 0012333 2334443 488999999998876555444444333 322 123445667755544 23444555
Q ss_pred C
Q 008221 236 Y 236 (573)
Q Consensus 236 ~ 236 (573)
.
T Consensus 237 ~ 237 (296)
T 2px0_A 237 S 237 (296)
T ss_dssp S
T ss_pred h
Confidence 4
No 199
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.36 E-value=0.00079 Score=70.43 Aligned_cols=124 Identities=21% Similarity=0.251 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeecccccc
Q 008221 81 NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA 160 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~ 160 (573)
+.+++++|++||||||++......-.. ....+.++...+.+..+.......+...+ ..... ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~-----~G~kVllv~~D~~r~~a~eqL~~~~~~~g--------v~~~~--~~~- 160 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK-----RGYKVGLVAADVYRPAAYDQLLQLGNQIG--------VQVYG--EPN- 160 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH-----TTCCEEEEEECCSCHHHHHHHHHHHHTTT--------CCEEC--CTT-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCeEEEEecCccchhHHHHHHHHHHhcC--------Cceee--ccc-
Confidence 568999999999999988754321111 11235555555555444333333332222 11100 000
Q ss_pred cccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCc--ccHHHHHHHHHHHHH-hCCCcEEEEecccc
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERT--LATDVLFGLLKEVLK-NRPDLKLVVMSATL 226 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~--~~~d~ll~~l~~l~~-~~~~~~iil~SATl 226 (573)
...+-...+..+..+...+++++|+|+++... .+.. ++..+..+.. ..|+..+++++|+.
T Consensus 161 -----~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~-lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 161 -----NQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETK-LLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp -----CSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTH-HHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHH-HHHHHHHHHHhhCCcceEEEEeCcc
Confidence 11233333334444445789999999987433 3333 3333333322 24566777777765
No 200
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.29 E-value=0.00094 Score=68.79 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=62.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeeccc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC 157 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~ 157 (573)
+..|+.++|+|||||||||++..++-.-.. . ..+.++..-.|.... ....+++..... .
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~-~----~~g~I~~~e~~~e~~---------------~~~~~~~v~Q~~-~ 191 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQ-T----KSYHIITIEDPIEYV---------------FKHKKSIVNQRE-V 191 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHH-H----SCCEEEEEESSCCSC---------------CCCSSSEEEEEE-B
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCc-C----CCcEEEEecccHhhh---------------hccCceEEEeee-c
Confidence 678999999999999999999855321100 0 012222322332110 001122111100 0
Q ss_pred ccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccHHHHHc
Q 008221 158 SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQG 233 (573)
Q Consensus 158 ~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~~~~~~ 233 (573)
......+ +..++.++..+|+++++||.- +...+...++.. . .+..++..+|+.+.....+
T Consensus 192 ---g~~~~~~------~~~l~~~L~~~pd~illdE~~----d~e~~~~~l~~~-~--~g~~vi~t~H~~~~~~~~~ 251 (372)
T 2ewv_A 192 ---GEDTKSF------ADALRAALREDPDVIFVGEMR----DLETVETALRAA-E--TGHLVFGTLHTNTAIDTIH 251 (372)
T ss_dssp ---TTTBSCS------HHHHHHHTTSCCSEEEESCCC----SHHHHHHHHHHH-T--TTCEEEECCCCCSHHHHHH
T ss_pred ---CCCHHHH------HHHHHHHhhhCcCEEEECCCC----CHHHHHHHHHHH-h--cCCEEEEEECcchHHHHHH
Confidence 0001111 345566677799999999973 122233444432 2 2677888889877654443
No 201
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.28 E-value=0.00012 Score=77.20 Aligned_cols=136 Identities=13% Similarity=0.103 Sum_probs=75.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh-----------hcCc---cCCC--------hhhcCceEEEEec-CcccccccHH
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGV---DIET--------PDRRRKMMIACTQ-PRRVAAMSVS 133 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l-----------l~~~---~~~~--------~~~~~~~~i~~t~-p~~~~~~~v~ 133 (573)
.+..|+.++|+|+|||||||++..+. +.+. .... ....+.+.++++. ......+++.
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~ 232 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGA 232 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHH
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHH
Confidence 46789999999999999999987432 2222 1000 0112335566653 2233344555
Q ss_pred HHHHHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHh
Q 008221 134 RRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN 213 (573)
Q Consensus 134 ~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~ 213 (573)
+++..... .... -+..+. ..-..+..++.|+ +++.++ +.++++ -.+.|......+..+++++.+.
T Consensus 233 ~~~~~~ae-~~~~-~~~~v~-----~~ld~l~~lS~g~-qrvslA---l~~p~~----t~glD~~~~~~l~~ll~r~~~~ 297 (438)
T 2dpy_A 233 AYATRIAE-DFRD-RGQHVL-----LIMDSLTRYAMAQ-REIALA---IGEPPA----TKGYPPSVFAKLPALVERAGNG 297 (438)
T ss_dssp HHHHHHHH-HHHT-TTCEEE-----EEEECHHHHHHHH-HHHHHH---TTCCCC----SSSCCTTHHHHHHHHHTTCSCC
T ss_pred HHHHHHHH-HHHh-CCCCHH-----HHHHhHHHHHHHH-HHHHHH---hCCCcc----cccCCHHHHHHHHHHHHHHHhc
Confidence 54432110 0000 011100 0001244578898 888887 777777 5666777777777777765431
Q ss_pred --CCCc-----EEEEeccccc
Q 008221 214 --RPDL-----KLVVMSATLE 227 (573)
Q Consensus 214 --~~~~-----~iil~SATl~ 227 (573)
..+. .+++.+|.++
T Consensus 298 ~~~~GsiT~~~tVlv~tHdl~ 318 (438)
T 2dpy_A 298 IHGGGSITAFYTVLTEGDDQQ 318 (438)
T ss_dssp STTSCEEEEEEEEECSSSCSC
T ss_pred cCCCCcccceeEEEEeCCCcc
Confidence 1142 6777789886
No 202
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.21 E-value=0.00065 Score=65.17 Aligned_cols=27 Identities=33% Similarity=0.597 Sum_probs=23.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
+..|+.++|.|++||||||+..+++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998876654
No 203
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.13 E-value=0.0014 Score=62.30 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=59.8
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEE-EecCcccccccHHHHHHHhhhhcccchhceeeeeccc
Q 008221 79 KANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA-CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC 157 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~-~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~ 157 (573)
..|..+++.|+.|+||||++.+.+..... . ...+.++ +....+ .... +....|... .
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~-~----g~kVli~~~~~d~r-~~~~------------i~srlG~~~--~-- 67 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY-A----DVKYLVFKPKIDTR-SIRN------------IQSRTGTSL--P-- 67 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH-T----TCCEEEEEECCCGG-GCSS------------CCCCCCCSS--C--
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh-c----CCEEEEEEeccCch-HHHH------------HHHhcCCCc--c--
Confidence 45789999999999999998866543221 0 1122221 111111 1111 111222110 0
Q ss_pred ccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEecccc
Q 008221 158 SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (573)
Q Consensus 158 ~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl 226 (573)
.+...+...+...+.....-.++++||+||++- +..+ .++.+..+... +..+|++.+..
T Consensus 68 -----~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~--l~~~-~ve~l~~L~~~--gi~Vil~Gl~~ 126 (223)
T 2b8t_A 68 -----SVEVESAPEILNYIMSNSFNDETKVIGIDEVQF--FDDR-ICEVANILAEN--GFVVIISGLDK 126 (223)
T ss_dssp -----CEEESSTHHHHHHHHSTTSCTTCCEEEECSGGG--SCTH-HHHHHHHHHHT--TCEEEEECCSB
T ss_pred -----ccccCCHHHHHHHHHHHhhCCCCCEEEEecCcc--CcHH-HHHHHHHHHhC--CCeEEEEeccc
Confidence 001122333433333222234689999999974 3333 55666666554 78999988854
No 204
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.12 E-value=0.00035 Score=79.62 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=58.8
Q ss_pred cccccccCHHHHHHHHhcccccCCCc--EEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLERYK--VIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~--~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
+..+..+|+|++||+.+++++..+++ ++|||| +++|......++++++++... +.++|++||.++.
T Consensus 459 ~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~--G~TvivVtHd~~~ 528 (916)
T 3pih_A 459 SRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL--GNTVIVVEHDEEV 528 (916)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT--TCEEEEECCCHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHH
Confidence 56678899999999999999998777 999999 899999999999999988543 7899999999864
No 205
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.10 E-value=0.0005 Score=74.95 Aligned_cols=37 Identities=22% Similarity=0.460 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 66 PVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 66 p~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..++.|.+.+..+..+.+++|.|++||||||++..++
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~ 225 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVA 225 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHH
Confidence 4567899999999999999999999999999887544
No 206
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.08 E-value=0.00092 Score=60.93 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=52.3
Q ss_pred cccccccCHHHHHHHHhccccc----CCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 161 RTVLKYLTDGMLLREAMTDPLL----ERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll----~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
...+..+|+|+++++.++++++ ..++++|||| +++|......+..+++++.+ +.++|++||...
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~---~~~~ivith~~~ 128 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK---ESQFIVITLRDV 128 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT---TSEEEEECSCHH
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc---CCEEEEEEecHH
Confidence 4557789999999999999884 4579999999 77888888888888887632 568999999753
No 207
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.08 E-value=0.00061 Score=77.41 Aligned_cols=67 Identities=21% Similarity=0.189 Sum_probs=59.5
Q ss_pred ccccccccCHHHHHHHHhcccccCCC--cEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 160 ARTVLKYLTDGMLLREAMTDPLLERY--KVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~--~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
.+..+..||+|+.||+.++.++..++ .++|||| ++++..+.+.++++|+++... +.++|++||.++.
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~--G~TVIvVeHdl~~ 568 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL--GNTLIVVEHDEDT 568 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT--TCEEEEECCCHHH
T ss_pred cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCHHH
Confidence 35677889999999999999998874 8999999 899999999999999998643 8899999999864
No 208
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.08 E-value=0.0018 Score=64.42 Aligned_cols=125 Identities=25% Similarity=0.288 Sum_probs=59.9
Q ss_pred cCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeeccccc
Q 008221 80 ANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS 159 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~ 159 (573)
.+++++++|++|+||||+.......-.. . ...+.++-..+.+.........+.. ..|....... .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~-~----~~~v~l~~~d~~~~~~~~ql~~~~~--------~~~l~~~~~~--~ 161 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG-K----GRRPLLVAADTQRPAAREQLRLLGE--------KVGVPVLEVM--D 161 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH-T----TCCEEEEECCSSCHHHHHHHHHHHH--------HHTCCEEECC--T
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-c----CCeEEEecCCcccHhHHHHHHHhcc--------cCCeEEEEcC--C
Confidence 5789999999999999987744321111 0 1123344434433222111111111 1121110000 0
Q ss_pred ccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHH-hCCCcEEEEecccc
Q 008221 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATL 226 (573)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~-~~~~~~iil~SATl 226 (573)
...+..+++..++.....+++++|+||+.....+... +..+..+.. ..|+..++++.++.
T Consensus 162 ------~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~-~~~l~~~~~~~~~~~~~lv~~~~~ 222 (295)
T 1ls1_A 162 ------GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPL-MGELARLKEVLGPDEVLLVLDAMT 222 (295)
T ss_dssp ------TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHH-HHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ------CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHH-HHHHHHHhhhcCCCEEEEEEeCCC
Confidence 1244555666666555589999999997432222222 222222221 23555555566653
No 209
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.08 E-value=0.00039 Score=70.72 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=54.5
Q ss_pred cccccccCHHHHH------HHHhcccccCCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 161 RTVLKYLTDGMLL------REAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 161 ~~~i~~lT~G~l~------r~~~~~~ll~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
+..+..+|+|+++ +++++++++.+|++++||| +|+|......+.++++.+... +.++|++||..+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~--~~~vi~~sH~~~ 315 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK--IPQVILVSHDEE 315 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG--SSEEEEEESCGG
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEEChHH
Confidence 4567789999999 5667778889999999999 889988888999999887554 579999999854
No 210
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.06 E-value=0.0017 Score=65.49 Aligned_cols=23 Identities=48% Similarity=0.697 Sum_probs=20.3
Q ss_pred hcCCEEEEEcCCCCchhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..|++++++|+|||||||++..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~L 149 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKL 149 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998854
No 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.04 E-value=0.0026 Score=66.52 Aligned_cols=124 Identities=19% Similarity=0.273 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeecccccc
Q 008221 81 NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA 160 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~ 160 (573)
+.+++++|++|+||||+.......-.. ....+.++...+.+.++.......+...+..+ ... ..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~-----~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv--------~~~--~~- 163 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK-----RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV--------FGN--PQ- 163 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT-----TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE--------ECC--TT-
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH-----CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE--------Eec--CC-
Confidence 468999999999999987744321111 01245566666666655444333333322211 000 00
Q ss_pred cccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHH-hCCCcEEEEecccc
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATL 226 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~-~~~~~~iil~SATl 226 (573)
...+....+..+..+--.+++++|+|.+.....+. .+...++.+.. ..|+..+++++|+.
T Consensus 164 -----~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~-~lm~el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 164 -----EKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDK-ALIEEMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCH-HHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -----CCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchH-HHHHHHHHHHHhhcCceEEEEEeCCC
Confidence 01233333333333334569999999987433333 34444444332 23566777777765
No 212
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.04 E-value=0.00022 Score=78.40 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=33.9
Q ss_pred cCCCcEEEEeCC--------CcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 182 LERYKVIVLDEA--------HERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 182 l~~~~~lILDEa--------~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
...++++++||. ++|......+.++++.+........+++.+|+++
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccch
Confidence 457899999996 2344445677888888766555788888898886
No 213
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.01 E-value=0.00071 Score=77.17 Aligned_cols=67 Identities=16% Similarity=0.105 Sum_probs=59.6
Q ss_pred ccccccccCHHHHHHHHhcccccCC--CcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 160 ARTVLKYLTDGMLLREAMTDPLLER--YKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~--~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
.+..+..||+|+.||+.++.++..+ +.++|||| ++++..+.+.++++|+++... +.++|++||.++.
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~--G~TVIvVeHdl~~ 585 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDL--GNTLIVVEHDEDT 585 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECCCHHH
T ss_pred cCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHc--CCEEEEECCCHHH
Confidence 3567788999999999999999887 48999999 899999999999999998654 8899999999864
No 214
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.00 E-value=0.00078 Score=76.14 Aligned_cols=67 Identities=25% Similarity=0.302 Sum_probs=59.8
Q ss_pred ccccccccCHHHHHHHHhcccccCCC--cEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccH
Q 008221 160 ARTVLKYLTDGMLLREAMTDPLLERY--KVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (573)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~--~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~ 228 (573)
.+..+..+|+|++||+.+++++..++ .++|||| ++++..+...++++++.+... +..+|++||.++.
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~--G~TVIvVeHdl~~ 443 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG--GNSLFVVEHDLDV 443 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT--TCEEEEECCCHHH
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEcCCHHH
Confidence 35677889999999999999999988 5999999 899999999999999998654 7899999999863
No 215
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.94 E-value=0.00018 Score=74.04 Aligned_cols=25 Identities=16% Similarity=0.424 Sum_probs=21.7
Q ss_pred HHhc--CCEEEEEcCCCCchhhhhhhh
Q 008221 77 VLKA--NQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 77 ~i~~--g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+.. ++.++|+|+|||||||++..+
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L 190 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKL 190 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHH
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHH
Confidence 4566 899999999999999999854
No 216
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.92 E-value=0.0021 Score=59.16 Aligned_cols=40 Identities=20% Similarity=0.408 Sum_probs=27.0
Q ss_pred CCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 183 ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 183 ~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
.++++|++||++. +..+ +.+.++.+... +..+++...+.+
T Consensus 75 ~~~dvviIDE~Q~--~~~~-~~~~l~~l~~~--~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 75 EDTRGVFIDEVQF--FNPS-LFEVVKDLLDR--GIDVFCAGLDLT 114 (184)
T ss_dssp TTEEEEEECCGGG--SCTT-HHHHHHHHHHT--TCEEEEEEESBC
T ss_pred CCCCEEEEECccc--CCHH-HHHHHHHHHHC--CCCEEEEeeccc
Confidence 3678999999985 3333 55666666554 677777666544
No 217
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.89 E-value=0.0019 Score=65.66 Aligned_cols=44 Identities=23% Similarity=0.502 Sum_probs=28.1
Q ss_pred cCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 182 LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 182 l~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
..+++++|+||+|. ++......+++.+....++..+|++||..+
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 56899999999985 555444444444433334678888888754
No 218
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.66 E-value=0.006 Score=62.60 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCccC
Q 008221 460 DPPAPETLMRALEVLNYLGALDD 482 (573)
Q Consensus 460 ~pP~~~~~~~a~~~L~~lgald~ 482 (573)
.|.....+..+++.|...|.|..
T Consensus 328 ~~~~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 328 RPRVHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSEE
T ss_pred CCCCHHHHHHHHHHHHhCCCeEE
Confidence 45567789999999999999975
No 219
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.64 E-value=0.0012 Score=68.85 Aligned_cols=61 Identities=23% Similarity=0.192 Sum_probs=41.2
Q ss_pred ccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEecccc
Q 008221 162 TVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (573)
Q Consensus 162 ~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl 226 (573)
..+..++.|+.++..++.+++..|.+||+-=. |.... ..+..+++..+.. +..++.+||.-
T Consensus 248 ~~~~~ls~g~~el~~la~aL~~~P~ILVlNKl--Dl~~~-~~~~~l~~~l~~~-g~~vi~iSA~~ 308 (416)
T 1udx_A 248 EPLKTLETLRKEVGAYDPALLRRPSLVALNKV--DLLEE-EAVKALADALARE-GLAVLPVSALT 308 (416)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHSCEEEEEECC--TTSCH-HHHHHHHHHHHTT-TSCEEECCTTT
T ss_pred CCHHHHHHHHHHHHHHhHHhhcCCEEEEEECC--ChhhH-HHHHHHHHHHHhc-CCeEEEEECCC
Confidence 44556788999999888888999999999444 43444 3344444444332 56788888754
No 220
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.62 E-value=0.0013 Score=70.97 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=55.0
Q ss_pred ccccc-CHHHHHHHHhcccccCCC--cEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccHH
Q 008221 163 VLKYL-TDGMLLREAMTDPLLERY--KVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE 229 (573)
Q Consensus 163 ~i~~l-T~G~l~r~~~~~~ll~~~--~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~~ 229 (573)
.+..+ |+|+++|+.++++++.++ +++|||| +++|......+..+++++.+ +.++|++||.++..
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~---~~~vi~itH~~~~~ 461 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD---TRQVLVVTHLAQIA 461 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH---HSEEEEECCCHHHH
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHH
Confidence 34556 999999999999999999 9999999 77888888899999998864 57999999987643
No 221
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.62 E-value=0.00065 Score=60.98 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
+..|++++++|||||||||+++.+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l 53 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGM 53 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 378999999999999999999854
No 222
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.59 E-value=0.0067 Score=59.57 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=34.0
Q ss_pred CccCCCCCChHHHHHHHHhcCCCChHHHHHHHHH--HhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV--LKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~--i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..|+++.-.+...+.+...-..|.. ..+.+.. +..+..+++.||+|+|||++...+.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLK--HPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHH--CHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhh--CHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 4577775555555555432222211 1122222 2567789999999999999988653
No 223
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.58 E-value=0.0038 Score=66.10 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhc
Q 008221 71 KEEFLQVLKANQVIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 71 q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
=+.++.-+..|+.++|.|++|+||||+..++..+
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3445555778999999999999999999877654
No 224
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.58 E-value=0.0033 Score=66.62 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=29.8
Q ss_pred cCCCChHHHHHHHHHHh----cCC-EEEEEcCCCCchhhhhhhhh
Q 008221 63 KSLPVWQQKEEFLQVLK----ANQ-VIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 63 ~~lp~~~~q~~~i~~i~----~g~-~v~i~G~tGSGKTT~l~~~l 102 (573)
.+-.+++.|.+++..+. .++ .++|.|+.||||||++...+
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~ 66 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFII 66 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHH
Confidence 45566777877777653 234 99999999999999887443
No 225
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.57 E-value=0.0064 Score=64.29 Aligned_cols=24 Identities=50% Similarity=0.696 Sum_probs=20.6
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..|++++++|+|||||||++..+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHH
Confidence 357899999999999999998653
No 226
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.56 E-value=0.0066 Score=57.26 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=22.8
Q ss_pred HHHHHHHhcCC---EEEEEcCCCCchhhhhhhhh
Q 008221 72 EEFLQVLKANQ---VIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 72 ~~~i~~i~~g~---~v~i~G~tGSGKTT~l~~~l 102 (573)
+.+...+..++ .+++.|++|+||||++..+.
T Consensus 33 ~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 33 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp HHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 33444455555 89999999999999987553
No 227
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.49 E-value=0.0011 Score=61.74 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=20.8
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
+..|++++++|||||||||++..+
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHH
Confidence 457999999999999999998854
No 228
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.42 E-value=0.00024 Score=71.04 Aligned_cols=20 Identities=40% Similarity=0.738 Sum_probs=17.2
Q ss_pred EEEEEcCCCCchhhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~l 102 (573)
.++++|+||+||||++..+.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 35899999999999999754
No 229
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.37 E-value=0.011 Score=60.11 Aligned_cols=28 Identities=36% Similarity=0.342 Sum_probs=23.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
-+..|+++.|.|++||||||+..++...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999999998877654
No 230
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.021 Score=57.08 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=28.6
Q ss_pred CCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 183 ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 183 ~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
..+-+++|||+|.-. ..+.++.+++..........+|++++|++
T Consensus 131 ~~~~ii~lDE~d~l~-~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLL-SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSC-CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhh-cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 456799999998533 66666666653222222567778898885
No 231
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.33 E-value=0.0016 Score=61.82 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=21.0
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
....|+.++|+|||||||||++..+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~ 37 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALL 37 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 46789999999999999999998643
No 232
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.31 E-value=0.016 Score=54.71 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=19.9
Q ss_pred cCCEEEEEcCCCCchhhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.+..+++.||+|+||||++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999987554
No 233
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.29 E-value=0.0097 Score=60.09 Aligned_cols=126 Identities=13% Similarity=0.198 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHh-hhhcccchhc
Q 008221 71 KEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEE-MDVTIGEEVG 149 (573)
Q Consensus 71 q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~-~~~~~~~~vg 149 (573)
-++++.-+..|+.++|.|++|+||||+..++...... . . ..+++++-+- ....+..++... .+.....
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~----g-~~Vl~fSlEm--s~~ql~~Rlls~~~~v~~~~--- 104 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-D----D-RGVAVFSLEM--SAEQLALRALSDLTSINMHD--- 104 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-T----T-CEEEEEESSS--CHHHHHHHHHHHHHCCCHHH---
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c----C-CeEEEEeCCC--CHHHHHHHHHHHhhCCCHHH---
Confidence 3445555778999999999999999998877654322 1 1 1223333221 122333333221 1111000
Q ss_pred eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEe
Q 008221 150 YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (573)
Q Consensus 150 ~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~ 222 (573)
.. -..++.+...++..+...+.+..+.|.|+.. ...+.+...++.+.+..++..+|++
T Consensus 105 -------l~-----~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~---~si~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 105 -------LE-----SGRLDDDQWENLAKCFDHLSQKKLFFYDKSY---VRIEQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp -------HH-----HTCCCHHHHHHHHHHHHHHHHSCEEEECCTT---CCHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred -------Hh-----cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCC---CcHHHHHHHHHHHHHhcCCCCEEEE
Confidence 00 0147888888887776667777899999854 4566777888887766546777665
No 234
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.28 E-value=0.013 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ll 103 (573)
..|+..++.|+.||||||++.....
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~ 30 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIR 30 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 4578999999999999998876554
No 235
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.24 E-value=0.0015 Score=60.94 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=18.9
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..|+.++|+|||||||||++..+.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLF 25 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 368899999999999999998553
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.14 E-value=0.0023 Score=58.47 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=20.6
Q ss_pred cCCEEEEEcCCCCchhhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.|+.++|+|||||||||++..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~ 26 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLI 26 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 68899999999999999998654
No 237
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.11 E-value=0.0018 Score=59.57 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.1
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.+..|+.++++|+|||||||++..+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 36789999999999999999988653
No 238
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.07 E-value=0.011 Score=58.85 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=34.2
Q ss_pred CccCCCCCChHHHHHHHHhcCCCChHHHHHHHH-HHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQ-VLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~-~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.+|++..-.+...+.+.+.-..|.. ..+.+.. .+..+..+++.||+||||||+...+.
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~-~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala 70 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVE-HPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 70 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHH-CHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhh-CHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHH
Confidence 4577775555555555443222211 1111111 13567889999999999999988654
No 239
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.07 E-value=0.0019 Score=61.61 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=18.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+..|++++|+|||||||||++..+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999988654
No 240
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.06 E-value=0.024 Score=57.63 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=23.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
-+..|+++.|.||+||||||++.++...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3556899999999999999999877654
No 241
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.03 E-value=0.0023 Score=58.88 Aligned_cols=22 Identities=27% Similarity=0.655 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
|++++++|||||||||++..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5679999999999999988654
No 242
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.02 E-value=0.017 Score=57.03 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=19.7
Q ss_pred cCCEEEEEcCCCCchhhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.+..+++.||+||||||+...+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la 75 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVA 75 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHH
Confidence 46789999999999999988653
No 243
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.01 E-value=0.039 Score=48.19 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHHhcCCEEEEEcCCCCchhhhhhhhhh
Q 008221 76 QVLKANQVIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 76 ~~i~~g~~v~i~G~tGSGKTT~l~~~ll 103 (573)
.....+..+++.|++|+|||++...+.-
T Consensus 19 ~~a~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 19 QLSETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp HHTTCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred HHhCCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3446778899999999999999886543
No 244
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.01 E-value=0.05 Score=50.32 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=21.1
Q ss_pred HHHHHHhcC--CEEEEEcCCCCchhhhhhhhh
Q 008221 73 EFLQVLKAN--QVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 73 ~~i~~i~~g--~~v~i~G~tGSGKTT~l~~~l 102 (573)
++...+..+ ..+++.|++|+|||+++..+.
T Consensus 28 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp HHHHHHHTTCCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 333444443 348999999999999987553
No 245
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.96 E-value=0.014 Score=54.63 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=26.4
Q ss_pred CCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEecccc
Q 008221 184 RYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (573)
Q Consensus 184 ~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl 226 (573)
++++|++||+.- +..+.+ +.++.+... +..+|+..-..
T Consensus 101 ~~dvViIDEaQF--~~~~~V-~~l~~l~~~--~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 101 EMDVIAIDEVQF--FDGDIV-EVVQVLANR--GYRVIVAGLDQ 138 (214)
T ss_dssp SCCEEEECCGGG--SCTTHH-HHHHHHHHT--TCEEEEEECSB
T ss_pred CCCEEEEECccc--CCHHHH-HHHHHHhhC--CCEEEEEeccc
Confidence 589999999874 444444 667776543 77888776644
No 246
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.95 E-value=0.022 Score=57.98 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=16.8
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
.+++.||.|+||||+...+
T Consensus 40 ~~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999998754
No 247
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.92 E-value=0.0026 Score=59.66 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.5
Q ss_pred hcCCEEEEEcCCCCchhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..|+.++|+|+|||||||++..+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l 42 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPL 42 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998854
No 248
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.90 E-value=0.048 Score=54.66 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 72 EEFLQVLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 72 ~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+++...+..|..++|.|+.|+||||++..+.
T Consensus 22 ~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 22 RKLEESLENYPLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp HHHHHHHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCcCCHHHHHHHHH
Confidence 3344455557899999999999999998765
No 249
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.90 E-value=0.02 Score=54.59 Aligned_cols=28 Identities=39% Similarity=0.719 Sum_probs=24.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcC
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEG 105 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~ 105 (573)
+..|+.++|.|++|+|||++..+++.+.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998877653
No 250
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.90 E-value=0.0088 Score=60.86 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=22.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
....|+.++++|+||+||||+++.+.
T Consensus 211 ~~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 211 EALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCCEEEEECCCCccHHHHHHHHh
Confidence 34589999999999999999998654
No 251
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.89 E-value=0.031 Score=56.09 Aligned_cols=23 Identities=35% Similarity=0.673 Sum_probs=19.4
Q ss_pred hcCCEEEEEcCCCCchhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..+++++++|++|+||||++..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~L 125 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKM 125 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 45779999999999999988744
No 252
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.84 E-value=0.0033 Score=62.61 Aligned_cols=26 Identities=12% Similarity=0.335 Sum_probs=22.7
Q ss_pred HHHhcCCEEEEEcCCCCchhhhhhhh
Q 008221 76 QVLKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 76 ~~i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
-.+..|+.++|+|||||||||++..+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL 146 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSL 146 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHH
Confidence 34689999999999999999998854
No 253
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.82 E-value=0.0038 Score=58.03 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=21.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+..|+.++++|++||||||+...+.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 5679999999999999999988643
No 254
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.81 E-value=0.017 Score=58.91 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=19.9
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..+..++|.||+|+||||++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHH
Confidence 346689999999999999988654
No 255
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.74 E-value=0.0038 Score=63.94 Aligned_cols=27 Identities=41% Similarity=0.722 Sum_probs=23.7
Q ss_pred HHHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 76 QVLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 76 ~~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
-.+..|+.++|+|+|||||||++..+.
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHHHH
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999999998654
No 256
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.69 E-value=0.016 Score=59.09 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=19.7
Q ss_pred cCCEEEEEcCCCCchhhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.+..++|.|++|+||||++..+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~ 66 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVL 66 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 36789999999999999988654
No 257
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.69 E-value=0.014 Score=64.16 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 70 QKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 70 ~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..+.+-..+..|+.+++.||+||||||++..+.
T Consensus 49 ~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia 81 (604)
T 3k1j_A 49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMA 81 (604)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred hHhhccccccCCCEEEEEeCCCCCHHHHHHHHh
Confidence 345566678899999999999999999988553
No 258
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.68 E-value=0.004 Score=58.24 Aligned_cols=23 Identities=39% Similarity=0.382 Sum_probs=19.9
Q ss_pred hcCCEEEEEcCCCCchhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..|++++|+|+|||||||++..+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l 26 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQAL 26 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHH
Confidence 57889999999999999998854
No 259
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.57 E-value=0.0053 Score=57.49 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.1
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..|+.++++|||||||||++....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHH
Confidence 468999999999999999988654
No 260
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.52 E-value=0.027 Score=54.28 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=19.5
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.....+++.||+|+|||++...+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 345678999999999999987553
No 261
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.49 E-value=0.041 Score=51.47 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=25.9
Q ss_pred CCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEeccc
Q 008221 183 ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 225 (573)
Q Consensus 183 ~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SAT 225 (573)
.++++|++|||+- ..+.+.+.+.++... +..||...=.
T Consensus 100 ~~~dvV~IDEaQF---f~~~~v~~l~~la~~--gi~Vi~~GLd 137 (219)
T 3e2i_A 100 TNVDVIGIDEVQF---FDDEIVSIVEKLSAD--GHRVIVAGLD 137 (219)
T ss_dssp TTCSEEEECCGGG---SCTHHHHHHHHHHHT--TCEEEEEEES
T ss_pred cCCCEEEEechhc---CCHHHHHHHHHHHHC--CCEEEEeecc
Confidence 5789999999873 444566777777643 6776665433
No 262
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.48 E-value=0.023 Score=60.17 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=17.9
Q ss_pred CEEEEEcCCCCchhhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~l 102 (573)
.-+++.||+|+||||+...+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia 70 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVA 70 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 458899999999999988654
No 263
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.45 E-value=0.035 Score=56.75 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHHHHHHHcCCccC
Q 008221 460 DPPAPETLMRALEVLNYLGALDD 482 (573)
Q Consensus 460 ~pP~~~~~~~a~~~L~~lgald~ 482 (573)
+|.....+..++..|...|.+..
T Consensus 316 ~~~~~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCEEE
Confidence 45567789999999999999975
No 264
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.43 E-value=0.0064 Score=56.45 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.1
Q ss_pred hcCCEEEEEcCCCCchhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..|++++|+|++||||||++..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998854
No 265
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.41 E-value=0.011 Score=61.58 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.0
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..|+.++|+|||||||||++..++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~all 188 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGL 188 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHH
Confidence 568899999999999999998654
No 266
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.39 E-value=0.043 Score=51.96 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=20.9
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhhhc
Q 008221 79 KANQVIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
..|+..++.|+-||||||.+......
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r 42 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRR 42 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999987765543
No 267
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.38 E-value=0.018 Score=57.72 Aligned_cols=127 Identities=9% Similarity=0.096 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHh-hhhcccchhc
Q 008221 71 KEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEE-MDVTIGEEVG 149 (573)
Q Consensus 71 q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~-~~~~~~~~vg 149 (573)
=++++.-+..|+.++|.|++|+||||+..++..+... .. ..+++++-+ .....+..++... .+......
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-----~~vl~~slE--~s~~~l~~R~~~~~~~i~~~~l-- 127 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-----DVVNLHSLE--MGKKENIKRLIVTAGSINAQKI-- 127 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-----CEEEEEESS--SCHHHHHHHHHHHHTTCCHHHH--
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-----CeEEEEECC--CCHHHHHHHHHHHHcCCCHHHH--
Confidence 3445555778999999999999999998887664322 11 123333332 1122233333221 11111000
Q ss_pred eeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcE--EEEe
Q 008221 150 YSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLK--LVVM 222 (573)
Q Consensus 150 ~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~--iil~ 222 (573)
. ... ..++++...++..+...+.+..++|.|+.. ...+.+...++.+.+.. +.+ +|++
T Consensus 128 --------~--~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~---~~~~~i~~~i~~l~~~~-~~~~~lVVI 187 (315)
T 3bh0_A 128 --------K--AAR-RDFASEDWGKLSMAIGEISNSNINIFDKAG---QSVNYIWSKTRQTKRKN-PGKRVIVMI 187 (315)
T ss_dssp --------H--SCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSC---CBHHHHHHHHHHHHHTS-SSCCEEEEE
T ss_pred --------h--cCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCC---CCHHHHHHHHHHHHHhc-CCCCeEEEE
Confidence 0 000 124555555555554455667788888754 45666777777766553 444 5554
No 268
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.36 E-value=0.015 Score=60.86 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=50.8
Q ss_pred cccccCHHHHHHHHhccccc----CCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecccc
Q 008221 163 VLKYLTDGMLLREAMTDPLL----ERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (573)
Q Consensus 163 ~i~~lT~G~l~r~~~~~~ll----~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl 226 (573)
.+..+|+|+.+++.++.+++ ..+++++||| +++|......+..+++++... +.++|++||..
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~--~~~~ii~th~~ 397 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP--DLQFIVISLKN 397 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBT--TBEEEEECSCH
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcC--CCEEEEEECCH
Confidence 34569999999999999886 6899999999 677878888888888776322 67999999974
No 269
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.28 E-value=0.016 Score=60.87 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=26.4
Q ss_pred CCcEEEEeCCCcCc---ccHHHHHHHHHHHHHhCCCcEEEEeccc
Q 008221 184 RYKVIVLDEAHERT---LATDVLFGLLKEVLKNRPDLKLVVMSAT 225 (573)
Q Consensus 184 ~~~~lILDEa~~r~---~~~d~ll~~l~~l~~~~~~~~iil~SAT 225 (573)
++++|+|||+|.-. ...+.++..+..+... +.++|+.|+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~--~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDS--GKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTT--TCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHC--CCeEEEEECC
Confidence 78999999988422 2344566666655433 6778877765
No 270
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.28 E-value=0.044 Score=54.98 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=24.1
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcC
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEG 105 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~ 105 (573)
+..|+.+.|.|++||||||+..++..+.
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 4578999999999999999998877653
No 271
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.27 E-value=0.066 Score=54.19 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcC
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEG 105 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~ 105 (573)
+..|+++.|.|++||||||+..++....
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999877653
No 272
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.25 E-value=0.0083 Score=55.69 Aligned_cols=23 Identities=17% Similarity=0.554 Sum_probs=20.8
Q ss_pred cCCEEEEEcCCCCchhhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.|+.++|+||+||||||++..++
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999988654
No 273
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.24 E-value=0.0059 Score=56.02 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
|++++++|+|||||||++..+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHh
Confidence 5688999999999999998764
No 274
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.24 E-value=0.079 Score=52.46 Aligned_cols=124 Identities=22% Similarity=0.276 Sum_probs=59.6
Q ss_pred CCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeecccccc
Q 008221 81 NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA 160 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~ 160 (573)
+++++++|++|+||||++..+...-.. . ...+.++-..+.+..+.......+... |..+... .
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~-~----g~~v~l~~~D~~r~~a~~ql~~~~~~~--------~v~v~~~--~-- 160 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK-K----GFKVGLVGADVYRPAALEQLQQLGQQI--------GVPVYGE--P-- 160 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH-T----TCCEEEEECCCSSSHHHHHHHHHHHHH--------TCCEECC--T--
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-C----CCeEEEEecCCCCHHHHHHHHHHhccC--------CeEEEec--C--
Confidence 668999999999999988754321111 0 123445555554443332222222211 2111000 0
Q ss_pred cccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcc-cHHHHHHHHHHHHH-hCCCcEEEEeccc
Q 008221 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTL-ATDVLFGLLKEVLK-NRPDLKLVVMSAT 225 (573)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~-~~d~ll~~l~~l~~-~~~~~~iil~SAT 225 (573)
....+..+.+..+...-..+++++|+|=+..... ..+.++..++.+.. ..++..++++.++
T Consensus 161 ----~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~ 223 (297)
T 1j8m_F 161 ----GEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDAS 223 (297)
T ss_dssp ----TCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred ----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCC
Confidence 0123333333233221136899999999774331 23344444443322 2345566666665
No 275
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.23 E-value=0.098 Score=52.63 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=21.4
Q ss_pred HHHHHhcCC---EEEEEcCCCCchhhhhhhh
Q 008221 74 FLQVLKANQ---VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 74 ~i~~i~~g~---~v~i~G~tGSGKTT~l~~~ 101 (573)
+...+.+|+ .+++.||.|+|||++...+
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHHHHHH
Confidence 445556665 5899999999999987744
No 276
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.21 E-value=0.083 Score=54.95 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=18.7
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+++++++|++||||||+...+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~L 118 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKL 118 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999987744
No 277
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.17 E-value=0.016 Score=59.49 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=48.8
Q ss_pred ccccccCHHHHHHHH------hcccccCC-CcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 162 TVLKYLTDGMLLREA------MTDPLLER-YKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 162 ~~i~~lT~G~l~r~~------~~~~ll~~-~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
..+..+|+|+++++. +++++..+ ++++|||| +++|......+.+.++++. .+.+++++||..+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~---~~~~vi~~th~~~ 347 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK---SIPQMIIITHHRE 347 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC---SCSEEEEEESCGG
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc---cCCeEEEEEChHH
Confidence 345679999999874 45667788 99999999 6777777777777777642 2468999999865
No 278
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.12 E-value=0.012 Score=63.11 Aligned_cols=43 Identities=28% Similarity=0.368 Sum_probs=29.7
Q ss_pred HHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 59 LEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 59 l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+...|.++.... ..+--.+..|+.++|+|||||||||++..++
T Consensus 239 l~~~G~~~~~~l-~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 239 LIEKGTVPSGVL-AYLWLAIEHKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp HHHTTSSCHHHH-HHHHHHHHTTCCEEEEESTTSSHHHHHHHHG
T ss_pred HHhcCCCCHHHH-HHHHHHHhCCCEEEEECCCCCCHHHHHHHHH
Confidence 344555444332 2233457889999999999999999998643
No 279
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.04 E-value=0.02 Score=57.37 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+..+++.||+|+||||++..+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~ 58 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAG 58 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4679999999999999988654
No 280
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.01 E-value=0.063 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=20.2
Q ss_pred HHHhcCC--EEEEEcCCCCchhhhhhhhh
Q 008221 76 QVLKANQ--VIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 76 ~~i~~g~--~v~i~G~tGSGKTT~l~~~l 102 (573)
..+..++ .+++.||+|+||||+...+.
T Consensus 39 ~~l~~~~~~~~ll~G~~G~GKT~la~~l~ 67 (327)
T 1iqp_A 39 HYVKTGSMPHLLFAGPPGVGKTTAALALA 67 (327)
T ss_dssp HHHHHTCCCEEEEESCTTSSHHHHHHHHH
T ss_pred HHHHcCCCCeEEEECcCCCCHHHHHHHHH
Confidence 3444443 68999999999999887543
No 281
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.96 E-value=0.0096 Score=62.03 Aligned_cols=19 Identities=42% Similarity=0.777 Sum_probs=16.9
Q ss_pred EEEEcCCCCchhhhhhhhh
Q 008221 84 IILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 84 v~i~G~tGSGKTT~l~~~l 102 (573)
++|+|+||+||||++..+.
T Consensus 34 I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp EEEECCTTSSHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 5899999999999998765
No 282
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.85 E-value=0.1 Score=57.08 Aligned_cols=113 Identities=17% Similarity=0.303 Sum_probs=69.0
Q ss_pred CChHHHHHHHHHHhc--CCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhc
Q 008221 66 PVWQQKEEFLQVLKA--NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (573)
Q Consensus 66 p~~~~q~~~i~~i~~--g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (573)
-++.-|.+++..+.. ..+.+|+|+-|.|||+++...+-.-. . . +++|-|...++.++.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~--~------~--~~vtAP~~~a~~~l~~~~~~----- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA--G------R--AIVTAPAKASTDVLAQFAGE----- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS--S------C--EEEECSSCCSCHHHHHHHGG-----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH--h------C--cEEECCCHHHHHHHHHHhhC-----
Confidence 356778888888776 55789999999999999886554221 1 1 25566665554443332111
Q ss_pred ccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEec
Q 008221 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (573)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~S 223 (573)
.+.++.|..+. ....+.++||+|||-. +....+. .++.. ...++||
T Consensus 240 -------------------~i~~~~Pd~~~------~~~~~~dlliVDEAAa--Ip~pll~----~ll~~---~~~v~~~ 285 (671)
T 2zpa_A 240 -------------------KFRFIAPDALL------ASDEQADWLVVDEAAA--IPAPLLH----QLVSR---FPRTLLT 285 (671)
T ss_dssp -------------------GCCBCCHHHHH------HSCCCCSEEEEETGGG--SCHHHHH----HHHTT---SSEEEEE
T ss_pred -------------------CeEEeCchhhh------hCcccCCEEEEEchhc--CCHHHHH----HHHhh---CCeEEEE
Confidence 15566665532 1245789999999754 5554444 44333 2346667
Q ss_pred cccc
Q 008221 224 ATLE 227 (573)
Q Consensus 224 ATl~ 227 (573)
.|.+
T Consensus 286 tTv~ 289 (671)
T 2zpa_A 286 TTVQ 289 (671)
T ss_dssp EEBS
T ss_pred ecCC
Confidence 7774
No 283
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.78 E-value=0.1 Score=51.96 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=16.2
Q ss_pred CEEEEEcCCCCchhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~ 101 (573)
..+++.||+|+|||++...+
T Consensus 49 ~~~L~~G~~G~GKT~la~~l 68 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKAL 68 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHH
Confidence 35677788999999998765
No 284
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.77 E-value=0.042 Score=50.59 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=27.5
Q ss_pred CCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEeccccc
Q 008221 183 ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (573)
Q Consensus 183 ~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~ 227 (573)
.++++|++||++- + .+ ..+.+..+... +.+||+..-..+
T Consensus 90 ~~~DvIlIDEaQF--f-k~-~ve~~~~L~~~--gk~VI~~GL~~D 128 (195)
T 1w4r_A 90 LGVAVIGIDEGQF--F-PD-IVEFCEAMANA--GKTVIVAALDGT 128 (195)
T ss_dssp HTCSEEEESSGGG--C-TT-HHHHHHHHHHT--TCEEEEEEESBC
T ss_pred cCCCEEEEEchhh--h-HH-HHHHHHHHHHC--CCeEEEEecccc
Confidence 4689999999985 3 33 66666776643 788888766654
No 285
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.77 E-value=0.013 Score=64.39 Aligned_cols=69 Identities=19% Similarity=0.175 Sum_probs=40.7
Q ss_pred ChHHHHHHH----HHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHH
Q 008221 67 VWQQKEEFL----QVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (573)
Q Consensus 67 ~~~~q~~~i----~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (573)
+.+.|.+.+ +++.+|+++++.+|||+|||..+..+.+..... ...+.++..+|.+...++......+..
T Consensus 4 ~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---~~~kvli~t~T~~l~~Qi~~el~~l~~ 76 (620)
T 4a15_A 4 NRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE---RKLKVLYLVRTNSQEEQVIKELRSLSS 76 (620)
T ss_dssp -CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---cCCeEEEECCCHHHHHHHHHHHHHHhh
Confidence 355665555 567899999999999999998877655533210 011233444444444444444444433
No 286
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.74 E-value=0.036 Score=53.96 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=18.3
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
...+++.||+|+|||++...+.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3578899999999999987554
No 287
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.70 E-value=0.011 Score=54.71 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=21.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
....|++++++|++||||||+....
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACAL 45 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3467899999999999999998754
No 288
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.70 E-value=0.012 Score=53.13 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=19.4
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.|+.++++|++||||||+...+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 4789999999999999998754
No 289
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.69 E-value=0.086 Score=55.11 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=39.3
Q ss_pred cccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHH--HhcCCEEEEEcCCCCchhhhhhhh
Q 008221 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV--LKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~--i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+..+|++.+=-....+.+.+.-.+|+..- +.... +...+-+++.||+|||||++...+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~p--e~f~~~Gi~pprGILLyGPPGTGKTlLAkAi 263 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSP--ERFATLGIDPPKGILLYGPPGTGKTLCARAV 263 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCH--HHHHHHTCCCCSEEEECSCTTSSHHHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCH--HHHHHCCCCCCCceEeeCCCCCcHHHHHHHH
Confidence 344678888766667777766544444322 23333 345678999999999999987754
No 290
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.68 E-value=0.012 Score=59.92 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.6
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.+..|+.++|+|+|||||||++..+.
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~ 92 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMIC 92 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHh
Confidence 46789999999999999999988543
No 291
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.67 E-value=0.12 Score=53.13 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.5
Q ss_pred cCCEEEEEcCCCCchhhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
....+++.||+|+|||++...+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999988653
No 292
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.65 E-value=0.014 Score=55.99 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.9
Q ss_pred cCCEEEEEcCCCCchhhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.++.++|+|+|||||||++..+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999988653
No 293
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.59 E-value=0.12 Score=55.38 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
...+++.||+|+||||+...+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la 98 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVA 98 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999988654
No 294
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.58 E-value=0.012 Score=61.24 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.2
Q ss_pred HHhcCCE--EEEEcCCCCchhhhhhhhh
Q 008221 77 VLKANQV--IILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 77 ~i~~g~~--v~i~G~tGSGKTT~l~~~l 102 (573)
.+..|++ ++|+|+|||||||+++.+.
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHH
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHh
Confidence 5789999 9999999999999998653
No 295
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.54 E-value=0.012 Score=55.99 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.5
Q ss_pred hcCCEEEEEcCCCCchhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..|+.++|.|++||||||++..+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTT
T ss_pred CCceEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998854
No 296
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.53 E-value=0.15 Score=51.58 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+..+++.||+|+|||++...+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la 91 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMA 91 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999988553
No 297
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.53 E-value=0.013 Score=52.61 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.0
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+..++|+|++||||||+...+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 3678999999999999998754
No 298
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.49 E-value=0.027 Score=58.93 Aligned_cols=21 Identities=52% Similarity=0.776 Sum_probs=17.9
Q ss_pred CEEEEEcCCCCchhhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~l 102 (573)
.+++++|++|+||||+.....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999887543
No 299
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.46 E-value=0.055 Score=59.42 Aligned_cols=135 Identities=13% Similarity=0.204 Sum_probs=73.2
Q ss_pred CcEEEEecccccH-HHHHchhCCC-CeeeecCcccCCcc---cccCC-------CchhHHHHHHHHHHHHhhcCCCCCEE
Q 008221 216 DLKLVVMSATLEA-EKFQGYFYGA-PLMKVPGRLHPVEI---FYTQE-------PERDYLEAAIRTVVQIHMCEPSGDIL 283 (573)
Q Consensus 216 ~~~iil~SATl~~-~~~~~~~~~~-~~i~v~g~~~~v~~---~y~~~-------~~~~~~~~~~~~l~~i~~~~~~g~iL 283 (573)
...+|++|||+.. +.|.+.++-. ..+.++ ..++.+. ++... ....+.....+.+..+... .+|.+|
T Consensus 375 ~~~~il~SaTL~p~~~~~~~lGl~~~~~~~~-spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~-~~g~~l 452 (620)
T 4a15_A 375 ESKTIHMSGTLDPFDFYSDITGFEIPFKKIG-EIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK-VKKNTI 452 (620)
T ss_dssp GSEEEEEESSCCSHHHHHHHHCCCCCEEECC-CCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH-HCSCEE
T ss_pred CCeEEEEccCCCcHHHHHHHhCCCceeeecC-CCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh-CCCCEE
Confidence 4689999999964 4555555422 222222 1222111 11110 1122334445555555543 467899
Q ss_pred EecCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeec--cccccccc
Q 008221 284 VFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN--IAETSLTI 361 (573)
Q Consensus 284 VFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~--iae~gitI 361 (573)
||+|+....+.+++.|. . -+.. +.-+++..++..+++.|+ +. ..|+++|. ...-|||+
T Consensus 453 vlF~Sy~~l~~v~~~l~-~--------~~~~---~~q~~~~~~~~~ll~~f~-~~-------~~vL~~v~~gsf~EGiD~ 512 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVS-F--------EHMK---EYRGIDQKELYSMLKKFR-RD-------HGTIFAVSGGRLSEGINF 512 (620)
T ss_dssp EEESCHHHHHHHTSSCC-S--------CCEE---CCTTCCSHHHHHHHHHHT-TS-------CCEEEEETTSCC------
T ss_pred EEeCCHHHHHHHHHHHH-h--------cchh---ccCCCChhHHHHHHHHhc-cC-------CcEEEEEecCceeccccC
Confidence 99999998888877664 1 0222 444555567778888887 54 68999984 67779999
Q ss_pred CCe--EEEEcCCc
Q 008221 362 DGI--VYVIDPGF 372 (573)
Q Consensus 362 ~~V--~~VId~g~ 372 (573)
||= +.||=.|+
T Consensus 513 ~g~~l~~viI~~l 525 (620)
T 4a15_A 513 PGNELEMIILAGL 525 (620)
T ss_dssp --CCCCEEEESSC
T ss_pred CCCceEEEEEEcC
Confidence 984 46665565
No 300
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.45 E-value=0.015 Score=52.79 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.6
Q ss_pred EEEEEcCCCCchhhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~l 102 (573)
..+|+|+|||||||++..+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999988543
No 301
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.44 E-value=0.027 Score=57.38 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=46.0
Q ss_pred cccc-ccCHHHHHHHHhccccc---------CCCcEEEEeC--CCcCcccHHHHHHHHHHHHHhCCCcEEEEecc
Q 008221 162 TVLK-YLTDGMLLREAMTDPLL---------ERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSA 224 (573)
Q Consensus 162 ~~i~-~lT~G~l~r~~~~~~ll---------~~~~~lILDE--a~~r~~~~d~ll~~l~~l~~~~~~~~iil~SA 224 (573)
..+. ++|+|+.+++.++.+++ .++++++||| +++|......+++.++.+ ...+|+.||
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~-----~qt~i~~th 329 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV-----PQAIVTGTE 329 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS-----SEEEEEESS
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc-----CcEEEEEEe
Confidence 3455 79999999999999998 8999999999 788888888888777664 234555555
No 302
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.39 E-value=0.015 Score=58.09 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.6
Q ss_pred hcCCEEEEEcCCCCchhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..|++++|+|+|||||||++..+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L 100 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVL 100 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 67889999999999999998854
No 303
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.37 E-value=0.19 Score=50.22 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCchhhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~l 102 (573)
..++|.|+.|+|||+++..+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~ 51 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 689999999999999998765
No 304
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.34 E-value=0.14 Score=52.75 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=36.9
Q ss_pred ccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHH--HhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV--LKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~--i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+..+|++.+=-....+.+++.=.+|+.. .+.... +...+-+++.||+|||||++...+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~--pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA 203 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKH--PELFESLGIAQPKGVILYGPPGTGKTLLARAVA 203 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHC--HHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhC--HHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHH
Confidence 3456888864555566665554444432 122222 3445668899999999999877543
No 305
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.33 E-value=0.26 Score=49.26 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=17.7
Q ss_pred CEEEEEcCCCCchhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~ 101 (573)
..+++.||+|+|||++...+
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 46899999999999998865
No 306
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.33 E-value=0.24 Score=48.74 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=17.3
Q ss_pred CCEEEEEcCCCCchhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQ 100 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~ 100 (573)
+..+++.||+|+|||++...
T Consensus 67 ~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 44799999999999999873
No 307
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.27 E-value=0.19 Score=46.30 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=29.6
Q ss_pred CCCcEEEEeCC----CcCcccHHHHHHHHHHHHHhCCCcEEEEecccccHHH
Q 008221 183 ERYKVIVLDEA----HERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEK 230 (573)
Q Consensus 183 ~~~~~lILDEa----~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~~~ 230 (573)
.++++|||||. +.+.+..+.+++++.+ +.++.-+|+.+...+.+.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~ap~~l 167 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGCHRDI 167 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSCCHHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCCcHHH
Confidence 67999999994 4455777776666542 333666777666655443
No 308
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.1 Score=53.98 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=36.5
Q ss_pred ccccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHH--HhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV--LKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~--i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..+..+|++.+=-....+.+.+.-.+|+..- +.... +...+-+++.||+|||||++...+.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~p--e~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA 237 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHP--ELYEEMGIKPPKGVILYGAPGTGKTLLAKAVA 237 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCC--HHHHHHTCCCCSEEEEESSTTTTHHHHHHHHH
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCH--HHHHhCCCCCCCCCceECCCCchHHHHHHHHH
Confidence 3445678888544555555555444433211 12222 3445779999999999999877543
No 309
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.24 E-value=0.13 Score=52.26 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=23.2
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
+..|+++.|.|++||||||+..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998877654
No 310
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.23 E-value=0.15 Score=51.00 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=32.8
Q ss_pred CccCCCCCChHHHHHHHHhcCCCChHHHHHHH-HHHhcCCEEEEEcCCCCchhhhhhhhhh
Q 008221 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFL-QVLKANQVIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i-~~i~~g~~v~i~G~tGSGKTT~l~~~ll 103 (573)
..|++.+=-+...+.+.+.-.+|...- +.. ........+++.||+|+|||++...+.-
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~--~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFP--HLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCG--GGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCH--HHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 457777555555555544222111100 000 0122346799999999999999886543
No 311
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.22 E-value=0.021 Score=52.90 Aligned_cols=24 Identities=42% Similarity=0.422 Sum_probs=19.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
+..++.++++|++||||||+....
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHH
Confidence 457889999999999999998754
No 312
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=94.21 E-value=0.41 Score=49.02 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=44.0
Q ss_pred CCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHH
Q 008221 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVA 137 (573)
Q Consensus 65 lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (573)
..+++.|..++..+...+.+++..+-+.|||+++..+.+...... .+..+++..+..-++..+.+.+.
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-----~g~~v~~vA~t~~qA~~vf~~i~ 229 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-----KDKAVGILAHKGSMSAEVLDRTK 229 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS-----SSCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHH
Confidence 367999999999887778899999999999998764433211111 12234445555555555555443
No 313
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.10 E-value=0.03 Score=55.63 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.0
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.+..|+.++++|+||+||||+++.+.
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH
Confidence 44579999999999999999999776
No 314
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.08 E-value=0.027 Score=57.43 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
...+++.||+|+|||++...+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala 105 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVA 105 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHH
Confidence 4568899999999999987554
No 315
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.05 E-value=0.022 Score=54.95 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..|.+++|.|++||||||+...+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999988553
No 316
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.00 E-value=0.17 Score=50.11 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=21.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll 103 (573)
...+..++|.|++|+|||++...+.-
T Consensus 22 a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred hCCCCcEEEECCCCchHHHHHHHHHH
Confidence 35567899999999999999876543
No 317
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.00 E-value=0.034 Score=55.71 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=17.3
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
+++|.|++||||||++..+
T Consensus 94 iigI~GpsGSGKSTl~~~L 112 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVL 112 (321)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999998754
No 318
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.93 E-value=0.019 Score=53.34 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=21.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
....|..++++|++||||||+.....
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999999999988653
No 319
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.91 E-value=0.016 Score=53.68 Aligned_cols=25 Identities=12% Similarity=0.355 Sum_probs=21.7
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+..|..++++|++||||||++..+.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHh
Confidence 4568889999999999999998654
No 320
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.89 E-value=0.018 Score=52.15 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=17.6
Q ss_pred CEEEEEcCCCCchhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~ 101 (573)
+.++|+|++||||||++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L 22 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRM 22 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999998754
No 321
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.87 E-value=0.17 Score=53.07 Aligned_cols=125 Identities=14% Similarity=0.172 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHH-Hhhhhcccchhce
Q 008221 72 EEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVA-EEMDVTIGEEVGY 150 (573)
Q Consensus 72 ~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~-~~~~~~~~~~vg~ 150 (573)
++++.-+..|+.++|.|++|+||||+..++..+... .. ...+.++..... ...+..++. ...+...
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~-~~---g~~vl~~slE~~---~~~l~~R~~~~~~~i~~------ 257 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL-KE---GVGVGIYSLEMP---AAQLTLRMMCSEARIDM------ 257 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TT---CCCEEEEESSSC---HHHHHHHHHHHHTTCCT------
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hC---CCeEEEEECCCC---HHHHHHHHHHHHcCCCH------
Confidence 444444678999999999999999998877654321 00 112333332221 122333332 2111111
Q ss_pred eeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEe
Q 008221 151 SIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (573)
Q Consensus 151 ~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~ 222 (573)
.... -..+++....++..+...+....+.|.|+.. ...+.+...++.+.+.. +.++|++
T Consensus 258 ----~~l~-----~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~---~s~~~l~~~~~~l~~~~-~~~lIvI 316 (444)
T 2q6t_A 258 ----NRVR-----LGQLTDRDFSRLVDVASRLSEAPIYIDDTPD---LTLMEVRARARRLVSQN-QVGLIII 316 (444)
T ss_dssp ----TTCC-----GGGCCHHHHHHHHHHHHHHHTSCEEEECCTT---CBHHHHHHHHHHHHHHS-CCCEEEE
T ss_pred ----HHHh-----CCCCCHHHHHHHHHHHHHHhcCCEEEECCCC---CCHHHHHHHHHHHHHHc-CCCEEEE
Confidence 0000 0135666666655444345556677777643 45566677777776554 4555554
No 322
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.85 E-value=0.25 Score=52.47 Aligned_cols=123 Identities=23% Similarity=0.360 Sum_probs=58.5
Q ss_pred CEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceeeeeccccccc
Q 008221 82 QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAR 161 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~ 161 (573)
.+++++|++|+||||++......-.. ....+.++...+.+..+....+......+..+ ++ . ...
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~-----~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v---~~-----~--~~~- 165 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQR-----KGWKTCLICADTFRAGAFDQLKQNATKARIPF---YG-----S--YTE- 165 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH-----TTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE---EE-----C--CCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEeccccchhHHHHHHHHhhccCceE---Ec-----c--CCC-
Confidence 37889999999999998865432111 01234555555544433322222222111110 00 0 000
Q ss_pred ccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHH-hCCCcEEEEecccc
Q 008221 162 TVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATL 226 (573)
Q Consensus 162 ~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~-~~~~~~iil~SATl 226 (573)
..+..+.+-.+......+++++|+|-+........ +...+..+.. ..++..++++.|+.
T Consensus 166 -----~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~-l~~el~~~~~~i~pd~vllVvDa~~ 225 (504)
T 2j37_W 166 -----MDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDS-LFEEMLQVANAIQPDNIVYVMDASI 225 (504)
T ss_dssp -----SCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHH-HHHHHHHHHHHHCCSEEEEEEETTC
T ss_pred -----CCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchh-HHHHHHHHHhhhcCceEEEEEeccc
Confidence 01122222122221136889999999875433322 2222322221 24577777888765
No 323
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.74 E-value=0.3 Score=49.72 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=23.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
-+..|+.+.|.|++||||||+..++..+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3457899999999999999998877654
No 324
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.71 E-value=0.11 Score=53.60 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=18.7
Q ss_pred cCCEEEE--EcCCCCchhhhhhhhh
Q 008221 80 ANQVIIL--VGETGSGKTTQIPQFV 102 (573)
Q Consensus 80 ~g~~v~i--~G~tGSGKTT~l~~~l 102 (573)
.+..++| .|+.|+||||++..+.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~ 73 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTV 73 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHH
Confidence 3457778 8999999999988654
No 325
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.70 E-value=0.025 Score=52.52 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=19.7
Q ss_pred hcCCEEEEEcCCCCchhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..+.+++|.|++||||||++..+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l 42 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQL 42 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 35789999999999999998754
No 326
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.69 E-value=0.022 Score=52.90 Aligned_cols=26 Identities=31% Similarity=0.254 Sum_probs=22.2
Q ss_pred HHHhcCCEEEEEcCCCCchhhhhhhh
Q 008221 76 QVLKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 76 ~~i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
+.+..+..++|+|++||||||+...+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L 41 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHH
Confidence 45667889999999999999998754
No 327
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.68 E-value=0.23 Score=49.31 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
...+++.||+|+|||++...+.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~ 59 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIA 59 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999988653
No 328
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.56 E-value=0.024 Score=57.38 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+..|++++++|+|||||||++..+.
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999998654
No 329
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.54 E-value=0.022 Score=55.84 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=32.7
Q ss_pred CccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHH--hcCCEEEEEcCCCCchhhhhhhhh
Q 008221 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVL--KANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i--~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.+|++.+--....+.+.+.-.+|... .+++..+ .-..-+++.||+||||||++..+.
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~--~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRN--PDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHS--HHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhC--HHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 46888876666766665543333322 2344433 222339999999999999998654
No 330
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.49 E-value=0.027 Score=59.57 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQ 100 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~ 100 (573)
+.. ++++|+|||||||||++..
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~ 48 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAG 48 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHH
T ss_pred Ecc-ceEEEECCCCCcHHHHHHH
Confidence 456 8999999999999999883
No 331
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.40 E-value=0.04 Score=54.73 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=22.2
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.+..|+.++++|+|||||||+++.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhc
Confidence 34578999999999999999998653
No 332
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.38 E-value=0.019 Score=57.11 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=22.0
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+..|+.++++|+||+||||+++.+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L 193 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAI 193 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHh
Confidence 4567999999999999999999864
No 333
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=93.29 E-value=0.3 Score=53.21 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHH
Q 008221 66 PVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (573)
Q Consensus 66 p~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (573)
.+++.|..++..+..++.+++.++-|+|||+++-.+.+....... +..+++..+..-++..+.+.+..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-----~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----DKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-----SCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-----CCeEEEEECCHHHHHHHHHHHHH
Confidence 468999999998877788999999999999987643322111111 12344455555555555555543
No 334
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.12 E-value=0.041 Score=48.46 Aligned_cols=20 Identities=25% Similarity=0.662 Sum_probs=17.3
Q ss_pred CEEEEEcCCCCchhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~ 101 (573)
...+|+|||||||||++.-+
T Consensus 24 g~~~I~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAI 43 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 47899999999999998744
No 335
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.09 E-value=0.036 Score=50.12 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.3
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.|..++++|++||||||+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMAL 25 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 5789999999999999988743
No 336
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.07 E-value=0.041 Score=51.76 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.4
Q ss_pred CCEEEEEcCCCCchhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ 101 (573)
+..++|+|++||||||+...+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999998754
No 337
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.99 E-value=0.031 Score=55.96 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCchhhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~l 102 (573)
++++|+|++||||||+++.++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHH
Confidence 478999999999999998765
No 338
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.76 E-value=0.5 Score=49.26 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=17.3
Q ss_pred CCEEEEEcCCCCchhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..+++++|++|+||||+....
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~L 120 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKL 120 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 358888999999999987644
No 339
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.76 E-value=0.044 Score=59.08 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.5
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+..|++++++|++||||||+...+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~L 389 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARAL 389 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHH
Confidence 3568999999999999999998754
No 340
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.69 E-value=0.3 Score=48.42 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=20.6
Q ss_pred HHHHHhcCC--EEEEEcCCCCchhhhhhhh
Q 008221 74 FLQVLKANQ--VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 74 ~i~~i~~g~--~v~i~G~tGSGKTT~l~~~ 101 (573)
+...+.+|+ .+++.||.|+||||+...+
T Consensus 9 L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~l 38 (305)
T 2gno_A 9 LKRIIEKSEGISILINGEDLSYPREVSLEL 38 (305)
T ss_dssp HHHHHHTCSSEEEEEECSSSSHHHHHHHHH
T ss_pred HHHHHHCCCCcEEEEECCCCCCHHHHHHHH
Confidence 334455554 7889999999999987654
No 341
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.50 E-value=0.052 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.736 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++||||||++..+.-.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999976543
No 342
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.50 E-value=0.059 Score=54.30 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.5
Q ss_pred CEEEEEcCCCCchhhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~l 102 (573)
+.+++.||+|+||||++..+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 679999999999999988653
No 343
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.48 E-value=0.052 Score=50.29 Aligned_cols=20 Identities=45% Similarity=0.605 Sum_probs=17.3
Q ss_pred EEEEEcCCCCchhhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~l 102 (573)
+++|+|++||||||+...+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999987653
No 344
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.43 E-value=0.067 Score=49.86 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhh
Q 008221 68 WQQKEEFLQVLKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 68 ~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
+..+... ..+..|..+++.|++||||||+....
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~~l 45 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAVEL 45 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHHHH
Confidence 3444444 45778999999999999999998754
No 345
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.41 E-value=0.071 Score=46.39 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=21.2
Q ss_pred HHHhcCCEEEEEcCCCCchhhhhhhh
Q 008221 76 QVLKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 76 ~~i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.....+..+++.|++|+|||++...+
T Consensus 22 ~~~~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 22 AAAKRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp HHHTCSSCEEEEEETTCCHHHHHGGG
T ss_pred HHhCCCCcEEEECCCCccHHHHHHHH
Confidence 34566788999999999999987754
No 346
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.36 E-value=0.044 Score=49.74 Aligned_cols=22 Identities=36% Similarity=0.684 Sum_probs=19.1
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.|..++++|++||||||+....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999998754
No 347
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.34 E-value=0.056 Score=55.42 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+..|+.+++.||+||||||++..+.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 5688999999999999999988554
No 348
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.33 E-value=0.11 Score=46.61 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+..+++.|++|+|||+++..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 4689999999999999987543
No 349
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.16 E-value=0.057 Score=49.60 Aligned_cols=22 Identities=27% Similarity=0.736 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++|+||||++..+.-.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999987643
No 350
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.16 E-value=0.057 Score=49.52 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=18.2
Q ss_pred CEEEEEcCCCCchhhhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~ll 103 (573)
+.++|+||+||||||++...+-
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999886543
No 351
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.12 E-value=0.06 Score=49.72 Aligned_cols=20 Identities=40% Similarity=0.507 Sum_probs=17.2
Q ss_pred EEEEEcCCCCchhhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~l 102 (573)
.++|+|++||||||+...+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~ 22 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFR 22 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999987543
No 352
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.11 E-value=0.068 Score=48.03 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=18.3
Q ss_pred CCEEEEEcCCCCchhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ 101 (573)
+..++++|++||||||+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~L 23 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 578999999999999998754
No 353
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.10 E-value=0.062 Score=47.79 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=17.4
Q ss_pred CEEEEEcCCCCchhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~ 101 (573)
.++++.|++||||||+....
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999998865
No 354
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.10 E-value=0.066 Score=47.67 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=16.8
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
.++|.|++||||||+....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999998754
No 355
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.08 E-value=0.068 Score=48.49 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.5
Q ss_pred CCEEEEEcCCCCchhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ 101 (573)
+..+++.|++||||||+....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L 23 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLA 23 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 678999999999999998754
No 356
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.05 E-value=0.26 Score=52.32 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=19.9
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.....+++.||+|+|||++...+.
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia 259 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVA 259 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHH
Confidence 455679999999999999988653
No 357
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.02 E-value=0.1 Score=57.65 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHh-cCCEEEEEcCCCCchhhhhhhhhh
Q 008221 67 VWQQKEEFLQVLK-ANQVIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 67 ~~~~q~~~i~~i~-~g~~v~i~G~tGSGKTT~l~~~ll 103 (573)
..+.|.+++..+. .....+|.||+|||||+.+-..+.
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~ 227 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIIL 227 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHH
Confidence 3456777776654 566899999999999998775544
No 358
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.97 E-value=0.055 Score=52.16 Aligned_cols=21 Identities=43% Similarity=0.490 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCchhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ 101 (573)
|+.++|+|++||||||+...+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 999999999999999998754
No 359
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.94 E-value=0.12 Score=47.41 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.4
Q ss_pred CEEEEEcCCCCchhhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~l 102 (573)
..+++.|++|+|||+++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 789999999999999987544
No 360
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.85 E-value=0.06 Score=49.70 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.0
Q ss_pred CCEEEEEcCCCCchhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..+++|+|++||||||+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 357999999999999998754
No 361
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.69 E-value=0.068 Score=48.62 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.3
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.|..++++|++||||||+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 5788999999999999998754
No 362
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.67 E-value=0.26 Score=51.68 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcC
Q 008221 71 KEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEG 105 (573)
Q Consensus 71 q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~ 105 (573)
=++++.-+..|+.++|.|++|+||||+..++..+.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 34455456789999999999999999998877654
No 363
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.65 E-value=0.069 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=18.7
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+.+++|.|++||||||+...+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L 51 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQI 51 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999998743
No 364
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.65 E-value=0.44 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=19.4
Q ss_pred cCCEEEEEcCCCCchhhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..++.+|.|+.||||||++...+
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~ 182 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRV 182 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHC
T ss_pred cccEEEEEcCCCCCHHHHHHHHh
Confidence 45688999999999999997654
No 365
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.54 E-value=0.086 Score=47.76 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
-..+++.|++||||||++...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~ 27 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLI 27 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHH
Confidence 3678999999999999988654
No 366
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=91.52 E-value=0.077 Score=55.46 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=20.7
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..+++++|+|||||||||++..+.
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~ 47 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAIS 47 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999988554
No 367
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.45 E-value=0.09 Score=48.09 Aligned_cols=25 Identities=36% Similarity=0.635 Sum_probs=20.8
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+..+..+++.|+.||||||+....
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHH
Confidence 4456789999999999999987754
No 368
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.35 E-value=0.07 Score=48.55 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=18.8
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+..+++.|++||||||+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4668999999999999988754
No 369
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.28 E-value=0.086 Score=47.30 Aligned_cols=21 Identities=38% Similarity=0.744 Sum_probs=17.7
Q ss_pred CEEEEEcCCCCchhhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~l 102 (573)
..+++.|++||||||+.....
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHH
Confidence 368899999999999987653
No 370
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.24 E-value=0.14 Score=45.75 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+..+++.|++|+|||+++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 5688999999999999987543
No 371
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.21 E-value=0.072 Score=50.55 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.1
Q ss_pred hcCCEEEEEcCCCCchhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..|..+++.|++||||||+....
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l 46 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEV 46 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 46889999999999999998754
No 372
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=91.17 E-value=0.071 Score=54.25 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.8
Q ss_pred cCCEEEEEcCCCCchhhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.| +++++|||||||||++..+.
T Consensus 26 ~g-~~~i~G~nG~GKttll~ai~ 47 (359)
T 2o5v_A 26 EG-VTGIYGENGAGKTNLLEAAY 47 (359)
T ss_dssp SE-EEEEECCTTSSHHHHHHHHH
T ss_pred CC-eEEEECCCCCChhHHHHHHH
Confidence 45 89999999999999988543
No 373
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.16 E-value=0.099 Score=47.30 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=18.3
Q ss_pred CCEEEEEcCCCCchhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ 101 (573)
+..++++|++||||||+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 578999999999999987754
No 374
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.13 E-value=0.14 Score=51.62 Aligned_cols=28 Identities=21% Similarity=0.526 Sum_probs=22.5
Q ss_pred HHHHHhcCCE--EEEEcCCCCchhhhhhhh
Q 008221 74 FLQVLKANQV--IILVGETGSGKTTQIPQF 101 (573)
Q Consensus 74 ~i~~i~~g~~--v~i~G~tGSGKTT~l~~~ 101 (573)
+-..+..|+. +++.||+|+||||++..+
T Consensus 37 L~~~i~~g~~~~~ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 37 VRKFVDEGKLPHLLFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp HHHHHHTTCCCCEEEECSSSSSHHHHHHHH
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHH
Confidence 4445667776 899999999999998754
No 375
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.13 E-value=0.08 Score=47.80 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=19.6
Q ss_pred hcCCEEEEEcCCCCchhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..+..+++.|++||||||+...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHH
Confidence 45678999999999999998754
No 376
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.12 E-value=0.087 Score=50.78 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=16.5
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
.++|+|+|||||||+....
T Consensus 3 li~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 6789999999999987754
No 377
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.12 E-value=0.095 Score=48.69 Aligned_cols=20 Identities=25% Similarity=0.662 Sum_probs=17.2
Q ss_pred CEEEEEcCCCCchhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~ 101 (573)
...+|+|+|||||||++.-+
T Consensus 24 ~~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHH
Confidence 58899999999999998743
No 378
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.10 E-value=0.12 Score=47.14 Aligned_cols=24 Identities=46% Similarity=0.706 Sum_probs=20.5
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
...+..+++.|+.||||||+....
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHH
Confidence 456789999999999999987754
No 379
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.99 E-value=0.093 Score=48.23 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.3
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.|..++++|+.||||||+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 5778999999999999998754
No 380
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.96 E-value=0.093 Score=46.99 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCCchhhhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ll 103 (573)
.+..++++|++|+||||++..+.-
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999998754
No 381
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.88 E-value=0.11 Score=47.23 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.1
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+..++++|++||||||+....
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 5778999999999999987754
No 382
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.78 E-value=0.18 Score=55.31 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 67 VWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 67 ~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..+.|.+++..+..+..++|.||+|+|||+.+...+
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i 216 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV 216 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHH
Confidence 467788999888888899999999999999877544
No 383
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.64 E-value=0.67 Score=49.30 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCc
Q 008221 69 QQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGV 106 (573)
Q Consensus 69 ~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~ 106 (573)
+.-++++.-+..|+.++|.|++|+||||+..++..+..
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 33455554577899999999999999999998876543
No 384
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.59 E-value=0.85 Score=51.22 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=16.6
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
.+++.||+|+|||++...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~al 541 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARAL 541 (758)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999988744
No 385
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.53 E-value=0.1 Score=50.05 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=17.4
Q ss_pred EEEEEcCCCCchhhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~l 102 (573)
-+++.||+||||||++..+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 38999999999999998654
No 386
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.43 E-value=0.1 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+..++++|++||||||+.....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5688999999999999988654
No 387
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.37 E-value=0.12 Score=45.67 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=18.0
Q ss_pred EEEEEcCCCCchhhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~l 102 (573)
.++++|++|+||||++..+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999875
No 388
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.36 E-value=0.12 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=19.0
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..+..+++.|++||||||+.....
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999987553
No 389
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.28 E-value=0.11 Score=48.86 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=20.7
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhh
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+...++++|.||+||||+|+...+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHH
Confidence 3556788999999999999987654
No 390
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.27 E-value=0.13 Score=46.19 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=17.9
Q ss_pred CEEEEEcCCCCchhhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~l 102 (573)
.++++.|++||||||++...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999987544
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.26 E-value=0.079 Score=49.17 Aligned_cols=19 Identities=32% Similarity=0.613 Sum_probs=16.8
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
.+++.|++||||||+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 6889999999999998754
No 392
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=90.24 E-value=0.11 Score=52.37 Aligned_cols=21 Identities=24% Similarity=0.645 Sum_probs=17.7
Q ss_pred CCEEEEEcCCCCchhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..+.+|+|||||||||++--+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 357889999999999998743
No 393
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.19 E-value=0.12 Score=47.33 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=16.6
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
.+++.|++||||||+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 5789999999999998754
No 394
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.17 E-value=0.26 Score=47.23 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=18.4
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
...+++.||+||||||+...+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 4568999999999999988653
No 395
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.17 E-value=0.098 Score=52.50 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=18.4
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+..++|+|||||||||+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 4568999999999999987654
No 396
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.16 E-value=0.22 Score=55.97 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..-+++.||+|||||++.+.+.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999988654
No 397
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.95 E-value=0.12 Score=46.87 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=17.9
Q ss_pred CCEEEEEcCCCCchhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ 101 (573)
+..+++.|++||||||+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L 23 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARI 23 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 457899999999999997754
No 398
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.94 E-value=0.12 Score=47.60 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=18.8
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+..+++.|+.||||||+....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4668999999999999998754
No 399
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.93 E-value=0.14 Score=47.30 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=19.6
Q ss_pred hcCCEEEEEcCCCCchhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..+..+++.|+.||||||+....
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999988754
No 400
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.88 E-value=0.41 Score=53.76 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=37.7
Q ss_pred cCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhh
Q 008221 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll 103 (573)
...|++.+--....+.+.+.-.+|....+.-.---+....-+++.||+|||||++...+.-
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH
Confidence 3468888777777777776655554321100000122345588999999999988776543
No 401
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.82 E-value=0.13 Score=47.54 Aligned_cols=24 Identities=21% Similarity=0.446 Sum_probs=19.7
Q ss_pred cCCEEEEEcCCCCchhhhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ll 103 (573)
.|..++|.|+|||||||+.....-
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467789999999999998876543
No 402
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.74 E-value=0.12 Score=52.27 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+..++|+|++||||||++..++
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~ 95 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFG 95 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 6789999999999999999665
No 403
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.68 E-value=0.14 Score=46.35 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=16.6
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
.+++.|+.||||||+....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L 21 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKV 21 (194)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999998754
No 404
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.56 E-value=0.13 Score=50.01 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=31.7
Q ss_pred cCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHh--cCCEEEEEcCCCCchhhhhhhhh
Q 008221 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLK--ANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~--~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..+|+++.-.+...+.++..... +. ....+..+. -..-+++.||+||||||++..+.
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 94 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHH
Confidence 34577775555554444332110 11 112333321 12338999999999999998654
No 405
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=89.55 E-value=0.14 Score=52.59 Aligned_cols=28 Identities=21% Similarity=0.109 Sum_probs=24.0
Q ss_pred HHHhcCCEEEEEcCCCCchhhhhhhhhh
Q 008221 76 QVLKANQVIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 76 ~~i~~g~~v~i~G~tGSGKTT~l~~~ll 103 (573)
..+..|..++++|+||+||||+++.+.-
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3556789999999999999999997654
No 406
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.55 E-value=0.16 Score=47.03 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=19.8
Q ss_pred hcCCEEEEEcCCCCchhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..+..++++|+.||||||+....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L 29 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKL 29 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 35789999999999999998754
No 407
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.50 E-value=0.14 Score=47.88 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=18.1
Q ss_pred CCEEEEEcCCCCchhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ 101 (573)
+.+++|.|++||||||+....
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 457899999999999988754
No 408
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.47 E-value=0.14 Score=50.73 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+..++|.|||||||||+.....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHH
Confidence 4578899999999999977553
No 409
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.43 E-value=0.14 Score=46.21 Aligned_cols=20 Identities=50% Similarity=0.845 Sum_probs=17.7
Q ss_pred EEEEEcCCCCchhhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~l 102 (573)
.++++|++|+||||++..+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999998765
No 410
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.31 E-value=0.14 Score=46.12 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=14.6
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+..+++.|+.||||||+....
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp -CCEEEEECCC----CHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999998764
No 411
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.30 E-value=0.16 Score=46.29 Aligned_cols=19 Identities=47% Similarity=0.649 Sum_probs=16.6
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
.+++.|+.||||||+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLL 20 (197)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999998754
No 412
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.15 E-value=0.18 Score=47.11 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=18.6
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+..+++.|+.||||||+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3568899999999999998754
No 413
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=89.15 E-value=0.036 Score=52.64 Aligned_cols=19 Identities=42% Similarity=0.747 Sum_probs=15.9
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
+++|+|||||||||++..+
T Consensus 29 ~~~i~GpnGsGKSTll~~i 47 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAF 47 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4568899999999998844
No 414
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.13 E-value=0.17 Score=45.48 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchhhhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll 103 (573)
.++++|++|+||||++..+.-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999998753
No 415
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.12 E-value=0.12 Score=49.76 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=19.3
Q ss_pred hcCCEEEEEcCCCCchhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..+..++++|++||||||+....
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHH
Confidence 34678999999999999988754
No 416
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=89.00 E-value=0.29 Score=55.29 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 67 VWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 67 ~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..+.|.+++..+..+..++|.||+|+|||+.+..++
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i 392 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV 392 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHH
Confidence 467788888888888899999999999999877543
No 417
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.92 E-value=0.19 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.8
Q ss_pred hcCCEEEEEcCCCCchhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..+..++|+|++||||||+...+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l 36 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKII 36 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 46778999999999999988754
No 418
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.80 E-value=0.19 Score=44.62 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=17.6
Q ss_pred CCEEEEEcCCCCchhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ 101 (573)
-++++|.|..||||||+....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHH
Confidence 378999999999999987754
No 419
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.77 E-value=0.16 Score=47.61 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=18.3
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+..+++.|+.||||||+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3457899999999999998754
No 420
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.61 E-value=0.19 Score=46.74 Aligned_cols=19 Identities=47% Similarity=0.674 Sum_probs=16.4
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
.++|.|+.||||||+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999998754
No 421
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.57 E-value=0.25 Score=47.19 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=19.6
Q ss_pred hcCCEEEEEcCCCCchhhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..+..+++.|+.||||||+...+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 355689999999999999987653
No 422
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=88.53 E-value=3.1 Score=41.91 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=19.5
Q ss_pred cCCEEEEEcCCCCchhhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..-.++++|++|+||||++..+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~ 188 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALT 188 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34578999999999999998765
No 423
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.51 E-value=0.84 Score=56.08 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=27.4
Q ss_pred HHhcCCEEEEEcCCCCchhhhhhhhhhcCcc
Q 008221 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVD 107 (573)
Q Consensus 77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~ 107 (573)
-+..|+.+++.|++||||||+..+++.++..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k 1107 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 1107 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5778999999999999999999998887654
No 424
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.50 E-value=0.21 Score=52.04 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=39.5
Q ss_pred ccccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHH--HhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV--LKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~--i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..+..+|++.+--....+.+.+.-.+|+..- +.... +...+-+++.||+|||||++...+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~p--e~f~~~g~~~prGvLLyGPPGTGKTllAkAiA 236 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRA--DKFKDMGIRAPKGALMYGPPGTGKTLLARACA 236 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCS--HHHHHHCCCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCH--HHHHhCCCCCCCeeEEECcCCCCHHHHHHHHH
Confidence 3445679988777777777665544444321 12222 3445789999999999999877543
No 425
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.26 E-value=0.23 Score=45.62 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=17.9
Q ss_pred CCEEEEEcCCCCchhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ 101 (573)
+..++++|+.||||||+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457999999999999987754
No 426
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.25 E-value=0.85 Score=55.25 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=23.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
+..|+.++|.|++|+||||+..++..+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 557899999999999999998877654
No 427
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.25 E-value=0.19 Score=45.00 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=16.4
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
.++|.|++||||||+....
T Consensus 6 ~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5889999999999987754
No 428
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.24 E-value=0.19 Score=49.81 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=17.7
Q ss_pred CCEEEEEcCCCCchhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ 101 (573)
...++|+|||||||||+....
T Consensus 10 ~~~i~i~GptgsGKt~la~~L 30 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIEL 30 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHH
Confidence 357889999999999987754
No 429
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=88.20 E-value=0.16 Score=51.80 Aligned_cols=20 Identities=30% Similarity=0.685 Sum_probs=17.3
Q ss_pred CEEEEEcCCCCchhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~ 101 (573)
...+|+|+||||||+++--+
T Consensus 26 gl~vi~G~NGaGKT~ileAI 45 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAV 45 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 57889999999999998744
No 430
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.19 E-value=0.21 Score=45.20 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=17.3
Q ss_pred CEEEEEcCCCCchhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~ 101 (573)
..+++.|+.||||||+....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999987754
No 431
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.13 E-value=0.21 Score=45.22 Aligned_cols=19 Identities=47% Similarity=0.656 Sum_probs=16.5
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
.+++.|+.||||||+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKL 20 (195)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999988754
No 432
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.10 E-value=0.21 Score=46.43 Aligned_cols=19 Identities=32% Similarity=0.749 Sum_probs=16.3
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
++++.||+||||+|+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999997754
No 433
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.99 E-value=0.21 Score=45.89 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=17.8
Q ss_pred CCEEEEEcCCCCchhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ 101 (573)
...+++.|+.||||||+....
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 357899999999999998754
No 434
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.99 E-value=0.22 Score=46.34 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.4
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
.++|+|+.||||||+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999998764
No 435
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=87.94 E-value=0.22 Score=45.59 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
...++|.|++||||||+.....
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999887543
No 436
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.72 E-value=0.23 Score=43.21 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++|+||||++..+.-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999987643
No 437
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.70 E-value=0.21 Score=48.15 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=18.4
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+..++++|++||||||+....
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~L 24 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNL 24 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHH
Confidence 3557899999999999988754
No 438
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.66 E-value=0.21 Score=50.39 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
...+..++++|++|+||||++..+.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHH
Confidence 4567899999999999999998654
No 439
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.60 E-value=0.23 Score=43.14 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++|+||||++..+.-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999987643
No 440
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=87.55 E-value=0.21 Score=44.42 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=16.9
Q ss_pred CEEEEEcCCCCchhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~ 101 (573)
..+++.|+.||||||+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46889999999999987754
No 441
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.55 E-value=0.24 Score=43.38 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++|+||||++..+.-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4788999999999999987643
No 442
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.51 E-value=0.67 Score=46.91 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=19.1
Q ss_pred cCCEEEEEcCCCCchhhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.+..+++.||+|||||++...+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999887553
No 443
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.51 E-value=0.3 Score=48.99 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=21.6
Q ss_pred HHHHHHhcC--CEEEEEcCCCCchhhhhhhh
Q 008221 73 EFLQVLKAN--QVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 73 ~~i~~i~~g--~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+...+..+ ..+++.||+|+||||++..+
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l 78 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTILAL 78 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHHHH
Confidence 344455555 45899999999999998754
No 444
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.48 E-value=0.74 Score=45.01 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+..+++.||+|+|||++...+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la 71 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLA 71 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 5678899999999999987543
No 445
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.47 E-value=0.23 Score=49.84 Aligned_cols=20 Identities=40% Similarity=0.531 Sum_probs=17.1
Q ss_pred CEEEEEcCCCCchhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+++|.|||||||||+...+
T Consensus 8 ~lI~I~GptgSGKTtla~~L 27 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEV 27 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHH
Confidence 47899999999999987644
No 446
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.45 E-value=1 Score=54.58 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=24.3
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhhcCc
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVLEGV 106 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll~~~ 106 (573)
+..|..+.|.|++||||||+..+++.+..
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~ 408 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 33689999999999999999988876543
No 447
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.44 E-value=0.25 Score=43.70 Aligned_cols=19 Identities=37% Similarity=0.340 Sum_probs=16.3
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
.+++.|+.||||||+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5789999999999987754
No 448
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.35 E-value=0.29 Score=48.17 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=17.6
Q ss_pred CEEEEEcCCCCchhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~ 101 (573)
..+++.||+|+|||++...+
T Consensus 48 ~~~ll~G~~GtGKt~la~~l 67 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTL 67 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 57999999999999998754
No 449
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=87.33 E-value=0.42 Score=53.96 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 67 VWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 67 ~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
..+.|.+++..+..+..++|.||.|||||+.+...+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i 396 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV 396 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 457899999998888899999999999999876543
No 450
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=87.23 E-value=0.24 Score=46.91 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=18.5
Q ss_pred EEEEEcCCCCchhhhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll 103 (573)
.++++|++|+||||++..++-
T Consensus 31 ~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 588999999999999987763
No 451
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.18 E-value=0.3 Score=48.77 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhh
Q 008221 68 WQQKEEFLQVLKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 68 ~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
......++..+..+..+++.||+|+|||++...+
T Consensus 33 ~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~l 66 (331)
T 2r44_A 33 KYMINRLLIGICTGGHILLEGVPGLAKTLSVNTL 66 (331)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHH
Confidence 3444556666777889999999999999998754
No 452
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.17 E-value=0.23 Score=46.96 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=17.4
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
...|..+++.|+.||||||+....
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l 45 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWF 45 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999998754
No 453
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.17 E-value=0.29 Score=45.79 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.3
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.|..+++.|+.||||||+....
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l 23 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVV 23 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998743
No 454
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.15 E-value=0.26 Score=46.30 Aligned_cols=19 Identities=42% Similarity=0.525 Sum_probs=16.5
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
.+++.|++||||||+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999998754
No 455
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.00 E-value=0.38 Score=46.29 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=21.0
Q ss_pred HhcCCEEEEEcCCCCchhhhhhhhhh
Q 008221 78 LKANQVIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 78 i~~g~~v~i~G~tGSGKTT~l~~~ll 103 (573)
...+..+++.|++|+|||++...+.-
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 44567899999999999999876543
No 456
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.95 E-value=0.26 Score=44.53 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=20.5
Q ss_pred cCCEEEEEcCCCCchhhhhhhhhhc
Q 008221 80 ANQVIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
..-.++++|++|+||||++..+.-.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3347899999999999999987643
No 457
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.91 E-value=0.27 Score=42.84 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++|+||||++..+.-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999877643
No 458
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=86.89 E-value=0.24 Score=49.46 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=16.9
Q ss_pred CEEEEEcCCCCchhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~ 101 (573)
..++|+|||||||||+....
T Consensus 6 ~~i~i~GptGsGKTtla~~L 25 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMAL 25 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999987654
No 459
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=86.84 E-value=0.47 Score=47.01 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.0
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
+..+++.||+|+|||++...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia 173 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMA 173 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 6899999999999999887543
No 460
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.77 E-value=0.33 Score=45.28 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=17.9
Q ss_pred CCEEEEEcCCCCchhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ 101 (573)
+..+++.|+.||||||+....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 467899999999999987754
No 461
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=86.76 E-value=0.27 Score=43.62 Aligned_cols=22 Identities=32% Similarity=0.753 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++|+||||++..++-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999887653
No 462
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.74 E-value=0.24 Score=44.64 Aligned_cols=20 Identities=40% Similarity=0.509 Sum_probs=16.8
Q ss_pred CEEEEEcCCCCchhhhhhhh
Q 008221 82 QVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~ 101 (573)
..++++|+.||||||+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 45889999999999987654
No 463
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.74 E-value=0.31 Score=46.26 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=18.2
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..-+++|.|++||||||+...+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~l 29 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGL 29 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999998754
No 464
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.71 E-value=0.28 Score=45.56 Aligned_cols=19 Identities=42% Similarity=0.485 Sum_probs=16.3
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
.+++.|+.||||||+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999998754
No 465
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.68 E-value=0.28 Score=42.99 Aligned_cols=22 Identities=36% Similarity=0.767 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++|+||||++..+.-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4788999999999999987643
No 466
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.68 E-value=0.27 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.5
Q ss_pred hcCCEEEEEcCCCCchhhhhhhh
Q 008221 79 KANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 79 ~~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
..|..+++.|+.||||||+....
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l 26 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYL 26 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999998754
No 467
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.66 E-value=0.28 Score=42.72 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++|+||||++..+.-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4788999999999999987644
No 468
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.64 E-value=0.29 Score=42.88 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++|+||||++..++-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999999999999887644
No 469
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.62 E-value=0.28 Score=42.95 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchhhhhhhhhhcC
Q 008221 83 VIILVGETGSGKTTQIPQFVLEG 105 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~~ 105 (573)
.++++|++|+||||++..++-..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47889999999999999876443
No 470
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.59 E-value=0.29 Score=42.76 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++|+||||++..+.-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4788999999999999987643
No 471
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=86.58 E-value=0.29 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.7
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.|..+++.||+||||||++..+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~i 128 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSI 128 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4889999999999999998854
No 472
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.56 E-value=0.29 Score=42.96 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchhhhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll 103 (573)
.++++|++|+||||++..+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478899999999999988764
No 473
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=86.51 E-value=0.28 Score=44.23 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++|+||||++..++-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999987643
No 474
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.39 E-value=0.3 Score=44.10 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCchhhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~ll 103 (573)
.-.++++|++|+||||++..++-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34688999999999999998753
No 475
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.38 E-value=0.34 Score=46.11 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.6
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.|..+++.|+.||||||+....
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l 47 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVV 47 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 5889999999999999998754
No 476
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.35 E-value=0.3 Score=42.86 Aligned_cols=22 Identities=27% Similarity=0.518 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++|+||||++..+.-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999887644
No 477
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.33 E-value=0.37 Score=50.10 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=36.4
Q ss_pred cccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHH--HhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV--LKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~--i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.+..+|++.+=-....+.+.+.-.+|... .+.... +...+-+++.||+|||||++...+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~--p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQ--ADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHC--HHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhC--HHHHHhCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 44457888754455555555443333322 112222 3455679999999999999887543
No 478
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.26 E-value=0.85 Score=48.43 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=31.4
Q ss_pred cCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 63 KSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 63 ~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.+.--......++.++..+..+++.||+|+|||++...+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa 62 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLK 62 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGG
T ss_pred hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHH
Confidence 3444555566777788889999999999999999987553
No 479
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=86.24 E-value=0.3 Score=43.21 Aligned_cols=22 Identities=32% Similarity=0.718 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++|+||||++..++-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999987643
No 480
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=86.12 E-value=0.36 Score=45.28 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.7
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.|..+++.|+.||||||+....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l 25 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNIL 25 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 5889999999999999998754
No 481
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=86.05 E-value=0.31 Score=42.95 Aligned_cols=20 Identities=35% Similarity=0.705 Sum_probs=17.7
Q ss_pred EEEEEcCCCCchhhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~l 102 (573)
.++++|++|+||||++..+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 47899999999999998765
No 482
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.01 E-value=0.29 Score=50.30 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.4
Q ss_pred cCCEEEEEcCCCCchhhhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ll 103 (573)
.+..++|+|+|||||||++..++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH
Confidence 567789999999999999986654
No 483
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=85.94 E-value=0.33 Score=42.62 Aligned_cols=20 Identities=45% Similarity=0.702 Sum_probs=17.4
Q ss_pred EEEEEcCCCCchhhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~l 102 (573)
.++++|++|+||||++..+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37889999999999998764
No 484
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.92 E-value=0.3 Score=42.76 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.4
Q ss_pred EEEEEcCCCCchhhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~l 102 (573)
.++++|++|+||||++..+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47889999999999998764
No 485
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.87 E-value=0.37 Score=45.49 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=18.7
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+..+++.|+.||||||+...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999988754
No 486
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=85.74 E-value=0.34 Score=42.38 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++|+||||++..++-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4788999999999999887643
No 487
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=85.67 E-value=0.35 Score=47.83 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCchhhhhhhhhhc
Q 008221 82 QVIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 82 ~~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
..++|+|++|+||||++..++-.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999977644
No 488
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=85.66 E-value=0.39 Score=42.48 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.2
Q ss_pred cCCEEEEEcCCCCchhhhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ll 103 (573)
..-.++++|++|+||||++..+.-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 445788999999999999998754
No 489
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=85.61 E-value=0.34 Score=42.96 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++|+||||++..+.-.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999877643
No 490
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=85.58 E-value=1.2 Score=44.03 Aligned_cols=55 Identities=15% Similarity=0.309 Sum_probs=38.3
Q ss_pred CChHHHHHHHHhcC------CCChHHHHHHHHHHhc----------------CCEEEEEcCCCCchhhhhhhhhhcC
Q 008221 51 YSQRYYEILEKRKS------LPVWQQKEEFLQVLKA----------------NQVIILVGETGSGKTTQIPQFVLEG 105 (573)
Q Consensus 51 l~~~~~~~l~~~~~------lp~~~~q~~~i~~i~~----------------g~~v~i~G~tGSGKTT~l~~~ll~~ 105 (573)
.++.+++..++.+. .+.+..-.++...+.. |.-+++.|++|+||||+....+-.+
T Consensus 92 ~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 92 PPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp CCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 36777777776542 2333444555555665 8899999999999999888766544
No 491
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.50 E-value=0.36 Score=44.28 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=18.3
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+-+++|+|..||||||.....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHH
Confidence 4557899999999999987754
No 492
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=85.46 E-value=0.36 Score=44.26 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=16.8
Q ss_pred EEEEEcCCCCchhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ 101 (573)
+++|.|++||||||+....
T Consensus 4 ~i~i~G~~GsGKst~~~~l 22 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRV 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999988754
No 493
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=85.46 E-value=0.35 Score=42.76 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhhhhhhhhhc
Q 008221 83 VIILVGETGSGKTTQIPQFVLE 104 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll~ 104 (573)
.++++|++|+||||++..++-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999987643
No 494
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.41 E-value=0.27 Score=43.88 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCCchhhhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.-.++++|++|+||||++..+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4478899999999999998764
No 495
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=85.40 E-value=0.29 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=15.5
Q ss_pred cCCEEEEEcCCCCchhhhhhhh
Q 008221 80 ANQVIILVGETGSGKTTQIPQF 101 (573)
Q Consensus 80 ~g~~v~i~G~tGSGKTT~l~~~ 101 (573)
.+.+++|.|++||||||+...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L 25 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTF 25 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999987754
No 496
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.37 E-value=0.39 Score=50.02 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=37.1
Q ss_pred cccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHH--HhcCCEEEEEcCCCCchhhhhhhhh
Q 008221 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV--LKANQVIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~--i~~g~~v~i~G~tGSGKTT~l~~~l 102 (573)
.+..+|++.+=-....+.+.+.-.+|...- +.... +...+-+++.||+|||||++...+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p--~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNP--EIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCH--HHHHHHCCCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCH--HHHHhCCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 445568888655555555555444443321 12222 3445789999999999999877543
No 497
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=85.32 E-value=0.83 Score=50.37 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=40.5
Q ss_pred cccCccCCCCC-ChHHHHHHHH--hcCCCC--hHHHHHHHHHH---hcCCEEEEEcCCCCchhhhhhh
Q 008221 41 SLINRWNGKPY-SQRYYEILEK--RKSLPV--WQQKEEFLQVL---KANQVIILVGETGSGKTTQIPQ 100 (573)
Q Consensus 41 ~~~~~f~~~~l-~~~~~~~l~~--~~~lp~--~~~q~~~i~~i---~~g~~v~i~G~tGSGKTT~l~~ 100 (573)
..+|||..+++ ++...+.... ++.+|| +.+-+.....+ .+++.++|.|++|||||...+.
T Consensus 46 iavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~ 113 (697)
T 1lkx_A 46 ISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKK 113 (697)
T ss_dssp EEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHH
T ss_pred EEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHH
Confidence 45789998874 5666655433 235666 44445554444 4678999999999999987663
No 498
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=85.32 E-value=0.33 Score=43.05 Aligned_cols=21 Identities=24% Similarity=0.675 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhhhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQFVL 103 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~ll 103 (573)
.++++|++|+||||++..++-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578899999999999987653
No 499
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=85.31 E-value=0.37 Score=46.71 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhhhhhh
Q 008221 83 VIILVGETGSGKTTQIPQFV 102 (573)
Q Consensus 83 ~v~i~G~tGSGKTT~l~~~l 102 (573)
.++++|++||||||++..+.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~ 24 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALT 24 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999998764
No 500
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=85.30 E-value=0.35 Score=44.94 Aligned_cols=20 Identities=45% Similarity=0.620 Sum_probs=17.6
Q ss_pred CCEEEEEcCCCCchhhhhhh
Q 008221 81 NQVIILVGETGSGKTTQIPQ 100 (573)
Q Consensus 81 g~~v~i~G~tGSGKTT~l~~ 100 (573)
|..+++.|.-||||||+...
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~ 21 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINE 21 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 56889999999999998874
Done!