BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008222
(573 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GB5|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn
pdb|3GFD|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Mono-Iodotyrosine (Mit)
pdb|3GFD|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Mono-Iodotyrosine (Mit)
pdb|3GH8|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|C Chain C, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|D Chain D, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|E Chain E, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|F Chain F, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|G Chain G, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|H Chain H, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
Length = 259
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 199 WNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFH 245
W IP +T+ E +M+ ++FY L +V FI S H
Sbjct: 28 WQEAEESVEHIPFSHTRYPEQEMRMRSQEFYELLNKRRSVRFISSEH 74
>pdb|3TNZ|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn And Mono-Iodotyrosine
(Mit)
pdb|3TNZ|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn And Mono-Iodotyrosine
(Mit)
pdb|3TO0|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn
pdb|3TO0|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn
Length = 259
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 199 WNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFH 245
W IP +T+ E +M+ ++FY L +V FI S H
Sbjct: 28 WQEAEESVEHIPFSHTRYPEQEMRMRSQEFYELLNKRRSVRFISSEH 74
>pdb|4AEZ|C Chain C, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|F Chain F, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|I Chain I, Crystal Structure Of Mitotic Checkpoint Complex
Length = 223
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 56 FYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLAS 113
FYE A ++ G+F A E++ GK+ FL + ++ T WL+ S +S
Sbjct: 152 FYEEYA-NYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHRWLEFAPQSFSS 208
>pdb|1PUT|A Chain A, An Nmr-Derived Model For The Solution Structure Of
Oxidized Putidaredoxin, A 2fe, 2-S Ferredoxin From
Pseudomonas
Length = 106
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 322 GLWDVMRDDGGSKEGCILRVYVNVAFSKKT 351
G++D++ D GGS VYVN AF+ K
Sbjct: 31 GIYDIVGDCGGSASCATCHVYVNEAFTDKV 60
>pdb|1OQR|A Chain A, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1OQR|B Chain B, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1OQR|C Chain C, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1XLP|A Chain A, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLP|B Chain B, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLP|C Chain C, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLQ|A Chain A, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|B Chain B, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|C Chain C, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
Length = 106
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 322 GLWDVMRDDGGSKEGCILRVYVNVAFSKK 350
G++D++ D GGS VYVN AF+ K
Sbjct: 31 GIYDIVGDCGGSASCATCHVYVNEAFTDK 59
>pdb|1GPX|A Chain A, C85s Gapdx, Nmr, 20 Structures
Length = 106
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 322 GLWDVMRDDGGSKEGCILRVYVNVAFSKK 350
G++D++ D GGS VYVN AF+ K
Sbjct: 31 GIYDIVGDCGGSASCATCHVYVNEAFTDK 59
>pdb|1OQQ|A Chain A, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A
[2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a
Resolution
pdb|1OQQ|B Chain B, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A
[2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a
Resolution
pdb|1XLN|A Chain A, Crystal Structure Of Oxidized C73sC85S PUTIDAREDOXIN, A
[2fe-2s] Ferredoxin From Pseudomonas Putida
pdb|1XLN|B Chain B, Crystal Structure Of Oxidized C73sC85S PUTIDAREDOXIN, A
[2fe-2s] Ferredoxin From Pseudomonas Putida
pdb|1XLO|A Chain A, Structure Of Reduced C73s/c85s Putidaredoxin, A [2fe-2s]
Ferredoxin From Pseudomonas Putida
pdb|1XLO|B Chain B, Structure Of Reduced C73s/c85s Putidaredoxin, A [2fe-2s]
Ferredoxin From Pseudomonas Putida
pdb|3LB8|C Chain C, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|D Chain D, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 106
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 322 GLWDVMRDDGGSKEGCILRVYVNVAFSKK 350
G++D++ D GGS VYVN AF+ K
Sbjct: 31 GIYDIVGDCGGSASCATCHVYVNEAFTDK 59
>pdb|1PDX|A Chain A, Putidaredoxin
pdb|1YJI|A Chain A, Rdc-Refined Solution Nmr Structure Of Reduced
Putidaredoxin
pdb|1YJJ|A Chain A, Rdc-Refined Solution Nmr Structure Of Oxidized
Putidaredoxin
Length = 106
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 322 GLWDVMRDDGGSKEGCILRVYVNVAFSKK 350
G++D++ D GGS VYVN AF+ K
Sbjct: 31 GIYDIVGDCGGSASCATCHVYVNEAFTDK 59
>pdb|1R7S|A Chain A, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
pdb|1R7S|B Chain B, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
pdb|1R7S|C Chain C, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
Length = 106
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 322 GLWDVMRDDGGSKEGCILRVYVNVAFSKKT 351
G++D++ D GGS VYVN AF+ K
Sbjct: 31 GIYDIVGDCGGSASCATCHVYVNEAFTDKV 60
>pdb|1H8T|C Chain C, Echovirus 11
pdb|1UPN|C Chain C, Complex Of Echovirus Type 12 With Domains 3 And 4 Of Its
Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
pdb|2C8I|C Chain C, Complex Of Echovirus Type 12 With Domains 1, 2, 3 And 4 Of
Its Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
Length = 238
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 147 SDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDA 206
S+ + +D S S +P ++TP E+ Q+ + + DS+ P+ + N+E D
Sbjct: 10 SNQFLTSDDFQSPSAMP-QFDVTP-ELNIPGEVQNLMEIAEVDSVVPVNNVAGNLETMDI 67
Query: 207 PKIP 210
+IP
Sbjct: 68 YRIP 71
>pdb|3TKL|B Chain B, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 267
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 216 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHP 275
++E N +MK FS D+ + + GD E S R + ++ + Q
Sbjct: 80 LSEINEKMKA-------FSKDSEKLTQLMEKHKGD-EKTVQSLQREHHDIKAKLANLQVL 131
Query: 276 IKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDD 330
+ G K ++ +++HL I QEV + Y +G WD +++D
Sbjct: 132 HDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHKGQFYLLQKGQWDAIKND 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,757,098
Number of Sequences: 62578
Number of extensions: 700652
Number of successful extensions: 1304
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1296
Number of HSP's gapped (non-prelim): 12
length of query: 573
length of database: 14,973,337
effective HSP length: 104
effective length of query: 469
effective length of database: 8,465,225
effective search space: 3970190525
effective search space used: 3970190525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)