BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008222
(573 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q06681|YSP2_YEAST GRAM domain-containing protein YSP2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YSP2 PE=1 SV=1
Length = 1438
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 146/389 (37%), Gaps = 65/389 (16%)
Query: 1 MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
MY+ I F+SNI G+ + V IPF E+
Sbjct: 682 MYISDAHIGFFSNILGWVSTV-------------------------------FIPFKEIV 710
Query: 61 AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQ--------HGSGSLA 112
+ + TAGIFPN I I KY FASF+SRD F LITD W Q +G G+
Sbjct: 711 QIEKKTTAGIFPNGIVIDTLHTKYIFASFMSRDATFDLITDVWNQIILGKKYRNGFGNND 770
Query: 113 SAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVE 172
DSSS + + + D I D++S + A+V E
Sbjct: 771 DGTISDSSSA--------FFDDSDDNDDDGDLDDDDPDINSTDMTSSDDIDADVFN---E 819
Query: 173 MQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLF 232
D Q L + H T+ + N+D V E N + +L
Sbjct: 820 SNDLGKNQKSTNYLLGPNKHSPTTADFKPSNNDH--------LVIEANINAPLGKVVNLL 871
Query: 233 FSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQK 292
+ +D V++ E + K F+ + ++ RD ++ P+ G C T
Sbjct: 872 YGED-VSYYERILK--AQKNFEISPIPNNFLTKKIRDYAYTKPLSGSIGPSKTKCLITDT 928
Query: 293 FRVYR-NSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT 351
Y ++ + + + DVP G+ F V+ ++ D S + L VY +V ++ K+
Sbjct: 929 LEHYDLEDYVKVLSITKNPDVPSGNIFSVKTVFLFSWDKNNSTK---LTVYNSVDWTGKS 985
Query: 352 VWKGKIVQSTLEECRDVYAMWIGMAHDVL 380
K I + T + D + I +L
Sbjct: 986 WIKSMIEKGTFDGVADTTKIMISEIKKIL 1014
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 17/152 (11%)
Query: 220 NFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVY 279
N + + +SL + DDT S+ +K + + +R++++ +
Sbjct: 1068 NIPVPLGTVFSLLYGDDT-----SYIKKIIENQNNFNVCDIPKFVNNAREITYTKKLNNS 1122
Query: 280 FGAKFGSCKETQKFR-VYRNSHLVIETSQEVHDVPYGDYFRVEGL----WDVMRDDGGSK 334
FG K C T+ + NS +++ DVPYG F V W G
Sbjct: 1123 FGPKQTKCIVTETIEHMDLNSFFMVKQIVRSPDVPYGSSFSVHTRFFYSW-------GDH 1175
Query: 335 EGCILRVYVNVAFSKKTVWKGKIVQSTLEECR 366
++V NV ++ K++ KG I + +++ R
Sbjct: 1176 NTTNMKVVTNVVWTGKSMLKGTIEKGSIDGQR 1207
>sp|Q8IYS0|GRM1C_HUMAN GRAM domain-containing protein 1C OS=Homo sapiens GN=GRAMD1C PE=2
SV=2
Length = 662
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 95/402 (23%), Positives = 154/402 (38%), Gaps = 94/402 (23%)
Query: 1 MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
+YL +++CFYSNIF +ET ++ I +T
Sbjct: 102 LYLSENWLCFYSNIFRWETTIS-------------------------------IALKNIT 130
Query: 61 AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQ-HGSGSLASAE---- 115
+ + KTA + PNAI+I +K+FF SF +RD ++ I W SL E
Sbjct: 131 FMTKEKTARLIPNAIQIVTESEKFFFTSFGARDRSYLSIFRLWQNVLLDKSLTRQEFWQL 190
Query: 116 -QQDSSSE----TSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTP 170
QQ+ +E +N + IE V S + DS R+E KL ++ T
Sbjct: 191 LQQNYGTELGLNAEEMENLSLSIEDVQPRSPGRSSLDDSGERDE------KLSKSISFTS 244
Query: 171 VEMQDDNVEQDFEPVLDTDSLHPIKTSSWN---IENSDAPKIPECYTKVAETNFQMKVED 227
+ + + F+ L K S N + S P + + T+V + + +
Sbjct: 245 ESISRVSETESFDGNSSKGGLG--KEESQNEKQTKKSLLPTLEKKLTRVPSKSLDLNKNE 302
Query: 228 FYSLFFS--DDTVN-------------FIESFHRKCGDKEFKC--TSWHRHYEFGYSRDL 270
+ SL S D+V+ FI D+ F+ TS +F SR++
Sbjct: 303 YLSLDKSSTSDSVDEENVPEKDLHGRLFINRIFHISADRMFELLFTSSRFMQKFASSRNI 362
Query: 271 --SFQHPIKVYFGAK---------------FGSCK-ETQKFRVYRNSH----LVIETSQE 308
P G G C T+K +Y+ S ++++
Sbjct: 363 IDVVSTPWTAELGGDQLRTMTYTIVLNSPLTGKCTAATEKQTLYKESREARFYLVDSEVL 422
Query: 309 VHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK 350
HDVPY DYF + ++R SK+ C LRV ++ + K+
Sbjct: 423 THDVPYHDYFYTVNRYCIIR---SSKQKCRLRVSTDLKYRKQ 461
>sp|Q5RC33|GRM1C_PONAB GRAM domain-containing protein 1C OS=Pongo abelii GN=GRAMD1C PE=2
SV=1
Length = 662
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 93/399 (23%), Positives = 155/399 (38%), Gaps = 88/399 (22%)
Query: 1 MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
+YL +++CFYSNIF +ET ++ I +T
Sbjct: 102 LYLSENWLCFYSNIFRWETTIS-------------------------------IALKNIT 130
Query: 61 AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQ-HGSGSLASAE---- 115
+ + KTA + PNAI+I +K+FF SF +RD ++ I W SL E
Sbjct: 131 FMTKEKTARLIPNAIQIVTESEKFFFTSFGARDRSYLSIFRLWQNVLLDKSLTRQEFWQL 190
Query: 116 -QQDSSSE----TSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPAN--VEM 168
QQ+ +E +N + IE V S + DS R+E LS + +
Sbjct: 191 LQQNYGTELGLNAEEMENLSLSIEDVRPRSPGRSSLDDSGERDEKLSKSISFTSESISRV 250
Query: 169 TPVEMQDDN----------------VEQDFEPVLD-------TDSLHPIKTSSWNIENS- 204
+ E D N ++ P L+ + SL K ++E S
Sbjct: 251 SETESFDGNSSKGGLGKEESQNEKQTKKSLLPTLEKKLTRVPSKSLDLNKNEYLSLEKSS 310
Query: 205 -----DAPKIPE--CYTKV-AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCT 256
D +PE + ++ F + + + L F+ + F++ F + T
Sbjct: 311 TSDSVDEENVPEKDLHGRLFINRIFHISADRMFELLFT--SSRFMQKFASSRNIIDVVST 368
Query: 257 SWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCK-ETQKFRVYRNSH----LVIETSQEVHD 311
W E G + + + I V G C T+K +Y+ S ++++ HD
Sbjct: 369 PW--TAELGGDQLRTMTYTI-VLNSPLTGKCTAATEKQTLYKESREARFYMVDSEVLTHD 425
Query: 312 VPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK 350
VPY DYF + ++R SK+ C LRV ++ + K+
Sbjct: 426 VPYHDYFYTVDRYCIIR---SSKQKCRLRVSTDLKYRKQ 461
>sp|O42976|YGZ7_SCHPO Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC20F10.07 PE=1
SV=1
Length = 764
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 40/134 (29%)
Query: 1 MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
MYL ICF S+IFG+ T + +IP E+
Sbjct: 230 MYLSESHICFNSSIFGWVTNI-------------------------------VIPVTEIV 258
Query: 61 AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW---------LQHGSGSL 111
+V + TA +FPNAI+I +Y FASF+SRD ++LI W L +G G +
Sbjct: 259 SVEKKSTAVVFPNAIQITTLHARYIFASFISRDTTYQLIIAIWKNTHPFLTTLANGHGVM 318
Query: 112 ASAEQQDSSSETSS 125
++ S S S
Sbjct: 319 DASGNHHSGSSNQS 332
>sp|Q8VEF1|GRM1A_MOUSE GRAM domain-containing protein 1A OS=Mus musculus GN=Gramd1a PE=2
SV=2
Length = 722
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 31/103 (30%)
Query: 1 MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
+YL ++ICFYSNIF +ET ++ I EVT
Sbjct: 126 LYLSENWICFYSNIFRWETTIS-------------------------------IQLKEVT 154
Query: 61 AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 103
+++ KTA + PNAI+I +K+FF SF +RD F LI W
Sbjct: 155 CLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLW 197
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 221 FQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYF 280
F M E + FSD F++ F ++ + + W + R L++ PI
Sbjct: 378 FHMGAERLQQMLFSDSP--FLQGFLQQRKFTDVTLSPWSSDSKCHQRRVLTYTIPISNQL 435
Query: 281 GAKFGSCKETQKF--RVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCI 338
G K S ETQ R + V+++ +PY DYF + ++ G ++
Sbjct: 436 GPKSASVVETQTLFRRGPQAGGCVVDSEVLTQGIPYQDYFYTAHRYCIL---GLARNKAR 492
Query: 339 LRVYVNVAFSKKTVWKGKIVQSTLEE 364
LRV + + +K W +V+S +E+
Sbjct: 493 LRVSSEIRY-RKQPW--SLVKSLIEK 515
>sp|Q3KR56|GRM1A_RAT GRAM domain-containing protein 1A OS=Rattus norvegicus GN=Gramd1a
PE=2 SV=2
Length = 723
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 31/103 (30%)
Query: 1 MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
+YL ++ICFYSNIF +ET ++ I EVT
Sbjct: 126 LYLSENWICFYSNIFRWETTIS-------------------------------IQLKEVT 154
Query: 61 AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 103
+++ KTA + PNAI+I +K+FF SF +RD F LI W
Sbjct: 155 CLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLW 197
Score = 40.0 bits (92), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 15/157 (9%)
Query: 221 FQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYF 280
F + E + FSD F++ F ++ + + W + R L++ PI
Sbjct: 379 FHVGAERLQQMLFSDSP--FLQGFLQQRKFTDVTLSPWSSDSKCHQRRVLTYTIPISNQL 436
Query: 281 GAKFGSCKETQKF--RVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCI 338
G K S ETQ R + V+++ +PY DYF + ++ G ++
Sbjct: 437 GPKSASVVETQTLFRRGPQAGGCVVDSEVLTQGIPYQDYFYTAHRYCIL---GLARNKAR 493
Query: 339 LRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGM 375
LRV + + +K W +V+S +E+ + W G+
Sbjct: 494 LRVSSEIRY-RKQPW--SLVKSLIEK-----SSWTGI 522
>sp|Q96CP6|GRM1A_HUMAN GRAM domain-containing protein 1A OS=Homo sapiens GN=GRAMD1A PE=1
SV=2
Length = 724
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 31/103 (30%)
Query: 1 MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
+YL ++ICFYSNIF +ET ++ I EVT
Sbjct: 124 LYLSENWICFYSNIFRWETTIS-------------------------------IQLKEVT 152
Query: 61 AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 103
+++ KTA + PNAI+I +K+FF SF +RD F LI W
Sbjct: 153 CLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLW 195
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 10/146 (6%)
Query: 221 FQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYF 280
F + E + FSD F++ F ++C + + W + R L++ PI
Sbjct: 376 FHVGAERLQQMLFSDSP--FLQGFLQQCKFTDVTLSPWSGDSKCHQRRVLTYTIPISNPL 433
Query: 281 GAKFGSCKETQKF--RVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCI 338
G K S ETQ R + V+++ +PY DYF + ++ G ++
Sbjct: 434 GPKSASVVETQTLFRRGPQAGGCVVDSEVLTQGIPYQDYFYTAHRYCIL---GLARNKAR 490
Query: 339 LRVYVNVAFSKKTVWKGKIVQSTLEE 364
LRV + + +K W +V+S +E+
Sbjct: 491 LRVSSEIRY-RKQPW--SLVKSLIEK 513
>sp|P38800|YHO0_YEAST Uncharacterized protein YHR080C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YHR080C PE=1 SV=1
Length = 1345
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 44/105 (41%), Gaps = 31/105 (29%)
Query: 1 MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
MY+ I FYSNI G+ + V IPF +
Sbjct: 583 MYISDQHIGFYSNILGWVSTV-------------------------------FIPFKTIV 611
Query: 61 AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQ 105
+ + TAGIFPN I I KY FASF SRD + LIT+ W Q
Sbjct: 612 QIEKRATAGIFPNGIVIDTLHTKYTFASFTSRDATYDLITEVWNQ 656
>sp|Q6PEM6|GRAM3_MOUSE GRAM domain-containing protein 3 OS=Mus musculus GN=Gramd3 PE=1
SV=2
Length = 445
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 36/134 (26%)
Query: 3 LFV--HFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
LFV ++ICF+S +FG +TK++ IP + VT
Sbjct: 156 LFVSENWICFHSKVFGKDTKIS-------------------------------IPAFSVT 184
Query: 61 AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITD--GWLQHGS-GSLASAEQQ 117
+++ KTA + PNA+ I +Y F S LSRD +KLI G L++ S G+ +
Sbjct: 185 LIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLIKSVCGHLENTSVGNSPNPSSA 244
Query: 118 DSSSETSSPQNGPV 131
++S P + P+
Sbjct: 245 ENSFRADRPSSLPL 258
>sp|Q96HH9|GRAM3_HUMAN GRAM domain-containing protein 3 OS=Homo sapiens GN=GRAMD3 PE=1
SV=1
Length = 432
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 36/134 (26%)
Query: 3 LFV--HFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
LFV ++ICF+S +FG +TK++ IP + VT
Sbjct: 143 LFVSENWICFHSKVFGKDTKIS-------------------------------IPAFSVT 171
Query: 61 AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITD--GWLQHGS-GSLASAEQQ 117
+++ KTA + PNA+ I +Y F S LSRD +KL+ G L++ S G+ +
Sbjct: 172 LIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENTSVGNSPNPSSA 231
Query: 118 DSSSETSSPQNGPV 131
++S P + P+
Sbjct: 232 ENSFRADRPSSLPL 245
>sp|Q5R8N8|GRAM3_PONAB GRAM domain-containing protein 3 OS=Pongo abelii GN=GRAMD3 PE=2
SV=1
Length = 446
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 36/134 (26%)
Query: 3 LFV--HFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
LFV ++ICF+S +FG +TK++ IP + VT
Sbjct: 157 LFVSENWICFHSKVFGKDTKIS-------------------------------IPAFSVT 185
Query: 61 AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITD--GWLQHGS-GSLASAEQQ 117
+++ KTA + PNA+ I +Y F S LSRD +KL+ G L++ S G+ +
Sbjct: 186 LIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENTSVGNSPNPSSA 245
Query: 118 DSSSETSSPQNGPV 131
++S P + P+
Sbjct: 246 ENSFRADRPSSLPL 259
>sp|Q5FVG8|GRAM3_RAT GRAM domain-containing protein 3 OS=Rattus norvegicus GN=Gramd3
PE=2 SV=1
Length = 445
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 35/110 (31%)
Query: 3 LFV--HFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
LFV ++ICF+S +FG +TK++ IP + VT
Sbjct: 156 LFVSENWICFHSKVFGKDTKIS-------------------------------IPAFSVT 184
Query: 61 AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITD--GWLQHGS 108
+++ KTA + PNA+ I +Y F S LSRD +KL+ G L++ S
Sbjct: 185 LIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSICGHLENTS 234
>sp|Q3KR37|GRM1B_HUMAN GRAM domain-containing protein 1B OS=Homo sapiens GN=GRAMD1B PE=1
SV=1
Length = 738
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 89/419 (21%), Positives = 155/419 (36%), Gaps = 109/419 (26%)
Query: 1 MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
+YL ++ICFYSNIF +ET +T + + ++
Sbjct: 129 LYLSENWICFYSNIFRWETLLTVRLK-------------------------------DIC 157
Query: 61 AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW-------------LQH- 106
++ + KTA + PNAI++ +K+FF SF +RD + ++ W L H
Sbjct: 158 SMTKEKTARLIPNAIQVCTDSEKHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHF 217
Query: 107 ------GSGSLASAEQ-----QDSSSETSSPQNGPVVIEKVNCCS----------ADPIA 145
L S ++ D + + PV +VN S A P
Sbjct: 218 VHQCYGNELGLTSDDEDYVPPDDDFNTMGYCEEIPVEENEVNDSSSKSSIETKPDASPQL 277
Query: 146 KSDSIIREEDLSS-DSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLH--------PIKT 196
SI S+ S+ P + + P+E + + E L D++ P+ +
Sbjct: 278 PKKSITNSTLTSTGSSEAPVSFDGLPLEEEALEGDGSLEKELAIDNIMGEKIEMIAPVNS 337
Query: 197 SSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESF------------ 244
S ++ +D IP + ++T+ + +V+ FY VN + +F
Sbjct: 338 PS--LDFNDNEDIPTELSDSSDTHDEGEVQAFYEDLSGRQYVNEVFNFSVDKLYDLLFTN 395
Query: 245 ---------HRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 295
R+ D F W + SR + + + K + +ETQ +
Sbjct: 396 SPFQRDFMEQRRFSDIIFH--PWKKEENGNQSRVILYTITLTNPLAPKTATVRETQT--M 451
Query: 296 YRNSH----LVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK 350
Y+ S VI+ HDVPY DYF + + R ++ LRV + + K+
Sbjct: 452 YKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTR---VARNKSRLRVSTELRYRKQ 507
>sp|Q80TI0|GRM1B_MOUSE GRAM domain-containing protein 1B OS=Mus musculus GN=Gramd1b PE=1
SV=2
Length = 738
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 89/419 (21%), Positives = 155/419 (36%), Gaps = 109/419 (26%)
Query: 1 MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
+YL ++ICFYSNIF +ET +T + + ++
Sbjct: 129 LYLSENWICFYSNIFRWETLLTVRLK-------------------------------DIC 157
Query: 61 AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW-------------LQH- 106
++ + KTA + PNAI++ +K+FF SF +RD + ++ W L H
Sbjct: 158 SMTKEKTARLIPNAIQVCTDSEKHFFTSFGARDRTYMMMFRLWQNALLEKPLCPKELWHF 217
Query: 107 ------GSGSLASAEQ-----QDSSSETSSPQNGPVVIEKVNCCS----------ADPIA 145
L S ++ D + + P+ +VN S A P
Sbjct: 218 VHQCYGNELGLTSDDEDYVPPDDDFNTMGYCEEIPIEENEVNDSSSKSSIETKPDASPQL 277
Query: 146 KSDSIIREEDLSS-DSKLPANVEMTPVEMQDDNVEQDFEPVLDTDS--------LHPIKT 196
SI S+ S+ P + + P+E + + E L D+ + P+ +
Sbjct: 278 PKKSITNSTLTSTGSSEAPVSFDGLPLEEEVMEGDGSLEKELAIDNIIGEKIEIMAPVTS 337
Query: 197 SSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVN----------------- 239
S ++ +D IP + ++T+ + +V+ FY VN
Sbjct: 338 PS--LDFNDNEDIPTELSDSSDTHDEGEVQAFYEDLSGRQYVNEVFNFSVDKLYDLLFTN 395
Query: 240 --FIESF--HRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 295
F+ F R+ D F W + SR + + + K + +ETQ +
Sbjct: 396 SPFLRDFMEQRRFSDIIFH--PWKKEENGNQSRVILYTITLTNPLAPKTATVRETQT--M 451
Query: 296 YRNSH----LVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK 350
Y+ S VI+ HDVPY DYF + + R ++ LRV + + K+
Sbjct: 452 YKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTR---VARNKSRLRVSTELRYRKQ 507
>sp|P43560|YFE2_YEAST Uncharacterized protein YFL042C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YFL042C PE=1 SV=2
Length = 674
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 33/137 (24%)
Query: 1 MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
+Y+ +CF SN+ G+ KV +I F +VT
Sbjct: 231 LYITETHLCFNSNVLGWIAKV-------------------------------LIAFEDVT 259
Query: 61 AVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSS 120
+ + AG+FP+AI I K F F+SRD AF L+ + W + ++E ++
Sbjct: 260 FMEKTSAAGLFPSAISIETKMGKTLFNGFISRDAAFGLMKEVWSRTLLQKDMASENINTK 319
Query: 121 SETSSPQNGPVVIEKVN 137
+E S NG + + +N
Sbjct: 320 AEKSG--NGKEIDDAIN 334
>sp|Q3V3G7|GRAM2_MOUSE GRAM domain-containing protein 2 OS=Mus musculus GN=Gramd2 PE=1
SV=1
Length = 320
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 41/167 (24%)
Query: 1 MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
+Y+ +++CF++++FG + KV +IP V
Sbjct: 107 LYISPNWLCFHASLFGKDIKV-------------------------------VIPVVSVQ 135
Query: 61 AVRRAKTAGIFPNAIEIFA-AGKKYFFASFLSRDEAFKLITD--GWLQHGSGSLASAEQQ 117
+++ K A + PN + I +KY F S LSRD + ++ LQ S S +
Sbjct: 136 LIKKHKMARLLPNGLAITTNTSQKYVFVSLLSRDSVYDMLRRVCTHLQPSSKKSLSIRKF 195
Query: 118 DSSSETSSPQNGPVVIEKVN----CCSADPIAKSDSIIREEDLSSDS 160
+E SP+ V+I ++ C + ++ DSI + +DS
Sbjct: 196 PEEAECESPE---VLIPEMKWRKACSAPASLSLPDSISCISQIPTDS 239
>sp|Q8IUY3|GRAM2_HUMAN GRAM domain-containing protein 2 OS=Homo sapiens GN=GRAMD2 PE=2
SV=2
Length = 354
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 32/100 (32%)
Query: 1 MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVT 60
+Y+ +++CF++++FG + KV +IP V
Sbjct: 105 LYISPNWLCFHASLFGKDIKV-------------------------------VIPVVSVQ 133
Query: 61 AVRRAKTAGIFPNAIEIFA-AGKKYFFASFLSRDEAFKLI 99
+++ K A + PN + I +KY F S LSRD + L+
Sbjct: 134 MIKKHKMARLLPNGLAITTNTSQKYIFVSLLSRDSVYDLL 173
>sp|Q9FGS8|C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170 OS=Arabidopsis
thaliana GN=At5g50170 PE=2 SV=1
Length = 1027
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 247 KCGDKEFKCTSWHRHYEFGYSRDLSFQ--HPIKVYFGAKFGSCKETQKFRVYRNSHLVIE 304
K G + T+W Y R LS++ H + V+ G +C + QK + ++
Sbjct: 887 KSGCLSYASTTWESKKPGVYERRLSYKYNHYVSVFGGGV--TCAQ-QKSPAPNDEGWILN 943
Query: 305 TSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEE 364
+HDVP+GD+FRV ++V + G + VY+ + + K ++ +I +S +E+
Sbjct: 944 EIVALHDVPFGDHFRVHIRYEV-KKAGVDCKTSKCEVYLKIRWLKTIKFEQRISKSIMEK 1002
Query: 365 CRDVYAM 371
R+ + +
Sbjct: 1003 FRNRFKV 1009
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 289 ETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVN--VA 346
E Q +R + S DVPYG+ F++E L+ ++ + + G R+ ++ +
Sbjct: 329 ENQVYRKASGKQFAVFVSVSTPDVPYGNTFKIELLYKILPETEPTAGGEASRLIISWGIQ 388
Query: 347 FSKKTVWKGKI 357
FS+ T+ KG I
Sbjct: 389 FSQSTIMKGMI 399
>sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis
thaliana GN=At1g03370 PE=2 SV=4
Length = 1020
Score = 39.3 bits (90), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%)
Query: 247 KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETS 306
+ G + + C+ W + Y R ++ + + S + QK V + ++E
Sbjct: 880 RAGCQSYSCSPWESEKDDVYERQTYYRDKRISRYRGEVTSTQ--QKSLVPEKNGWLVEEV 937
Query: 307 QEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECR 366
+H VP GDYF + + M + + +RVY + + K T + ++ ++ L +
Sbjct: 938 MTLHGVPLGDYFNLHLRYQ-MEESTSKPKTTYVRVYFGIEWLKSTRHQKRVTKNILVNLQ 996
Query: 367 DVYAMWIG 374
D M G
Sbjct: 997 DRLKMTFG 1004
>sp|Q08001|YL072_YEAST Uncharacterized protein YLR072W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YLR072W PE=1 SV=1
Length = 693
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 3 LFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAV 62
L + C++ F ++ ++ Y++ N+ L + S +M + IP E+ +
Sbjct: 179 LITDYFCYFHREFPYQGRI------YLS--NTHLCFNSTVL---NWMAKLQIPLNEIKYL 227
Query: 63 RRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGW 103
+ T +AI + +Y F+ F++RDE F+LIT W
Sbjct: 228 DKVTTNS---SAISVETVTNRYTFSGFIARDEVFQLITRVW 265
>sp|Q3UYK3|TBCD9_MOUSE TBC1 domain family member 9 OS=Mus musculus GN=Tbc1d9 PE=2 SV=2
Length = 1264
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 41 CFAISNEFMLQKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYF-FASFLSRDEAFKLI 99
CF E + IIP EVT V +A + + P+ + I + F FA+ RD + I
Sbjct: 336 CFTSKEENLCSLIIPLREVTIVEKADSCSVLPSPLSISTRNRMTFLFANLKDRDFLVQRI 395
Query: 100 TDGWLQHGSGSLASAEQQDSSSETS 124
+D +LQ + + S ++ S +S
Sbjct: 396 SD-FLQQTTSRIYSDKEFSGSCNSS 419
>sp|Q8CI52|GRM1C_MOUSE GRAM domain-containing protein 1C OS=Mus musculus GN=Gramd1c PE=1
SV=1
Length = 457
Score = 37.4 bits (85), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 11/134 (8%)
Query: 221 FQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYF 280
F + E + L F+ + +F++ F + T W R +++ +
Sbjct: 130 FHISAERMFELLFT--SSHFMQRFANSRNIIDVVSTPWTVESGGNQLRTMTYTIVLSNPL 187
Query: 281 GAKFGSCKETQKFRVYRNSH----LVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEG 336
K+ + E Q +Y+ S ++++ HDVPY DYF + ++R +K+
Sbjct: 188 TGKYTAATEKQT--LYKESREAQFYLVDSEVLTHDVPYHDYFYTLNRYCIVR---SAKQR 242
Query: 337 CILRVYVNVAFSKK 350
C LRV ++ + K+
Sbjct: 243 CRLRVSTDLKYRKQ 256
>sp|Q54IL5|UGT52_DICDI UDP-sugar-dependent glycosyltransferase 52 OS=Dictyostelium
discoideum GN=ugt52 PE=2 SV=1
Length = 1697
Score = 37.0 bits (84), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 41 CFAISNEFMLQK---IIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYF-FASFLSRDEAF 96
CF ++F QK +IP +V ++ K + PN I+I A F FASF+ R+ +
Sbjct: 922 CF--RSKFGFQKRTIVIPLSQVIEIK--KYSAFIPNGIKITTASHHEFQFASFIHRNRVY 977
Query: 97 KLITDGWLQ 105
+++ + WL+
Sbjct: 978 QILYETWLK 986
>sp|Q9PR24|UVRB_UREPA UvrABC system protein B OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=uvrB PE=3 SV=1
Length = 666
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 59 VTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLS--RDEAFKLITDGWLQHGSGSLASAEQ 116
V A + A +F E+F K +F S+ + EA+K ITD +++ S + A E
Sbjct: 64 VLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIEM 123
Query: 117 QDSSSETS-SPQNGPVVIEKVNC--CSADPI 144
S+ S + +N +V+ V C S PI
Sbjct: 124 MRLSTINSLATRNDVIVVASVACIYASVSPI 154
>sp|B1AIA9|UVRB_UREP2 UvrABC system protein B OS=Ureaplasma parvum serovar 3 (strain ATCC
27815 / 27 / NCTC 11736) GN=uvrB PE=3 SV=1
Length = 666
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 59 VTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLS--RDEAFKLITDGWLQHGSGSLASAEQ 116
V A + A +F E+F K +F S+ + EA+K ITD +++ S + A E
Sbjct: 64 VLAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIEM 123
Query: 117 QDSSSETS-SPQNGPVVIEKVNC--CSADPI 144
S+ S + +N +V+ V C S PI
Sbjct: 124 MRLSTINSLATRNDVIVVASVACIYASVSPI 154
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster
GN=cyp33 PE=1 SV=1
Length = 300
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 92 RDEAFKLI--TDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKV 136
++++FK I D WLQ +G+ E + + + +P GP VIEK
Sbjct: 88 KEDSFKPIWADDDWLQKHAGATLQPEGEPEAEKVETPSTGPAVIEKA 134
>sp|C6DZZ3|MUTS_GEOSM DNA mismatch repair protein MutS OS=Geobacter sp. (strain M21)
GN=mutS PE=3 SV=1
Length = 869
Score = 33.5 bits (75), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%)
Query: 106 HGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPAN 165
+G SLASA +D S+ SS P + E+V C A + + D+ I D SD A
Sbjct: 357 NGRISLASASAKDLSALRSSLSRLPAIKEQVAACGAGLLKELDAGIDPLDELSDLISSAI 416
Query: 166 VEMTPVEMQDDNVEQD 181
V+ P ++D + D
Sbjct: 417 VDDPPFVLRDGGIIAD 432
>sp|Q66K14|TBC9B_HUMAN TBC1 domain family member 9B OS=Homo sapiens GN=TBC1D9B PE=1 SV=3
Length = 1250
Score = 32.7 bits (73), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 41 CFAISNEFMLQKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYF-FASFLSRDEAFKLI 99
CFA E IIP EVT V +A ++ + P+ + I K F FA+ RD + I
Sbjct: 331 CFASKEEDACHLIIPLREVTIVEKADSSSVLPSPLSISTKSKMTFLFANLKDRDFLVQRI 390
Query: 100 TDGWLQHG----SGSLAS--AEQQDSSSETS-SPQNG 129
+D +LQ GS+ S A D S+E+S +PQ G
Sbjct: 391 SD-FLQKTPSKQPGSIGSRKASVVDPSTESSPAPQEG 426
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,478,288
Number of Sequences: 539616
Number of extensions: 8843241
Number of successful extensions: 21501
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 21438
Number of HSP's gapped (non-prelim): 78
length of query: 573
length of database: 191,569,459
effective HSP length: 123
effective length of query: 450
effective length of database: 125,196,691
effective search space: 56338510950
effective search space used: 56338510950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)