Query 008222
Match_columns 573
No_of_seqs 234 out of 655
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 21:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1032 Uncharacterized conser 100.0 5.6E-45 1.2E-49 404.3 20.7 442 1-572 141-583 (590)
2 PF02893 GRAM: GRAM domain; I 98.2 1.6E-06 3.5E-11 70.9 4.2 35 1-66 34-69 (69)
3 smart00568 GRAM domain in gluc 98.1 2.9E-06 6.3E-11 67.7 3.3 35 1-66 26-61 (61)
4 PF10698 DUF2505: Protein of u 97.0 0.063 1.4E-06 51.1 17.7 150 218-380 4-159 (159)
5 KOG1032 Uncharacterized conser 95.1 0.012 2.6E-07 67.2 2.4 134 245-383 445-580 (590)
6 PF14470 bPH_3: Bacterial PH d 94.2 0.31 6.7E-06 41.5 8.6 73 23-100 20-92 (96)
7 cd08876 START_1 Uncharacterize 92.4 11 0.00023 36.3 17.1 143 214-373 42-191 (195)
8 KOG4347 GTPase-activating prot 92.4 0.071 1.5E-06 60.6 2.1 73 1-105 43-116 (671)
9 cd05018 CoxG Carbon monoxide d 91.6 9.3 0.0002 34.0 14.7 59 315-379 84-142 (144)
10 cd08905 START_STARD1-like Chol 91.2 6.9 0.00015 38.9 14.5 147 217-377 53-207 (209)
11 cd08868 START_STARD1_3_like Ch 91.0 7.7 0.00017 38.2 14.6 147 215-376 50-205 (208)
12 cd08904 START_STARD6-like Lipi 91.0 9.8 0.00021 38.0 15.3 146 215-375 48-202 (204)
13 PF14844 PH_BEACH: PH domain a 90.6 0.31 6.8E-06 43.0 3.9 47 52-99 56-105 (106)
14 cd08906 START_STARD3-like Chol 89.3 22 0.00048 35.4 16.3 150 215-378 51-208 (209)
15 cd08871 START_STARD10-like Lip 89.0 13 0.00029 36.9 14.6 79 298-380 122-204 (222)
16 cd07821 PYR_PYL_RCAR_like Pyra 88.8 16 0.00034 32.1 14.0 129 215-371 3-134 (140)
17 PF00407 Bet_v_1: Pathogenesis 87.8 25 0.00054 33.3 17.2 144 214-382 5-150 (151)
18 cd00177 START Lipid-binding ST 84.8 29 0.00062 32.5 13.7 122 215-350 41-167 (193)
19 smart00234 START in StAR and p 83.7 44 0.00094 32.3 15.9 150 215-378 47-202 (206)
20 PF10805 DUF2730: Protein of u 80.9 3.3 7.1E-05 37.2 5.2 46 526-571 49-96 (106)
21 cd08903 START_STARD5-like Lipi 80.0 66 0.0014 31.9 15.4 153 215-378 48-207 (208)
22 cd07823 SRPBCC_5 Ligand-bindin 78.1 55 0.0012 29.9 13.3 53 312-368 82-136 (146)
23 PF04102 SlyX: SlyX; InterPro 76.8 5.1 0.00011 33.2 4.8 41 527-567 12-52 (69)
24 cd08870 START_STARD2_7-like Li 75.4 88 0.0019 30.9 15.5 152 215-378 52-208 (209)
25 cd00890 Prefoldin Prefoldin is 75.3 5.4 0.00012 35.9 5.0 43 524-566 85-127 (129)
26 PF01852 START: START domain; 75.3 80 0.0017 30.3 15.4 144 216-378 49-202 (206)
27 cd08869 START_RhoGAP C-termina 73.8 60 0.0013 31.9 12.4 118 216-351 47-171 (197)
28 PRK09039 hypothetical protein; 72.9 4.3 9.4E-05 43.7 4.4 71 477-571 26-98 (343)
29 PRK00295 hypothetical protein; 72.4 10 0.00022 31.4 5.5 41 527-567 13-53 (68)
30 PRK02793 phi X174 lysis protei 72.2 9.4 0.0002 32.0 5.3 41 527-567 16-56 (72)
31 smart00338 BRLZ basic region l 70.9 8.2 0.00018 31.2 4.6 38 527-564 27-64 (65)
32 PF02996 Prefoldin: Prefoldin 68.6 7.9 0.00017 34.6 4.5 42 524-565 75-116 (120)
33 cd08867 START_STARD4_5_6-like 68.1 1.3E+02 0.0027 29.6 14.3 149 215-374 48-203 (206)
34 PRK04325 hypothetical protein; 68.0 13 0.00028 31.4 5.3 41 527-567 17-57 (74)
35 PRK02119 hypothetical protein; 67.2 14 0.0003 31.1 5.3 41 527-567 17-57 (73)
36 PRK04406 hypothetical protein; 67.1 14 0.0003 31.4 5.3 41 527-567 19-59 (75)
37 PRK00736 hypothetical protein; 66.2 16 0.00034 30.4 5.4 41 527-567 13-53 (68)
38 PRK00846 hypothetical protein; 65.9 16 0.00034 31.3 5.4 40 528-567 22-61 (77)
39 cd08910 START_STARD2-like Lipi 62.1 1.7E+02 0.0037 29.0 15.2 145 216-377 52-205 (207)
40 PF02050 FliJ: Flagellar FliJ 60.9 23 0.0005 30.5 5.9 47 526-572 52-98 (123)
41 PRK10724 hypothetical protein; 60.4 1.6E+02 0.0034 28.1 13.8 35 319-357 98-132 (158)
42 cd08872 START_STARD11-like Cer 60.1 1.4E+02 0.003 30.5 12.1 79 301-384 138-232 (235)
43 cd08874 START_STARD9-like C-te 58.2 2.1E+02 0.0045 28.7 15.0 122 215-348 47-176 (205)
44 KOG3910 Helix loop helix trans 57.7 10 0.00023 42.5 3.7 36 454-489 541-578 (632)
45 PF11687 DUF3284: Domain of un 55.2 1.7E+02 0.0036 26.7 12.1 98 217-345 3-100 (120)
46 cd08877 START_2 Uncharacterize 54.8 2.2E+02 0.0048 28.0 13.9 149 214-376 47-212 (215)
47 PF13600 DUF4140: N-terminal d 54.4 12 0.00026 32.8 3.0 39 529-567 66-104 (104)
48 PF11932 DUF3450: Protein of u 53.0 26 0.00055 35.8 5.5 40 531-570 40-79 (251)
49 PF06115 DUF956: Domain of unk 52.5 23 0.00049 32.7 4.4 51 52-107 46-99 (118)
50 PRK00888 ftsB cell division pr 52.4 33 0.00071 30.8 5.4 37 531-567 32-68 (105)
51 TIGR02473 flagell_FliJ flagell 51.7 36 0.00078 31.0 5.8 46 527-572 69-114 (141)
52 PRK09841 cryptic autophosphory 50.2 25 0.00053 41.6 5.5 33 524-556 265-297 (726)
53 PF06698 DUF1192: Protein of u 49.8 20 0.00044 29.1 3.3 30 523-552 18-47 (59)
54 PRK03947 prefoldin subunit alp 47.3 40 0.00087 31.2 5.4 44 524-567 92-135 (140)
55 cd08911 START_STARD7-like Lipi 47.3 2.9E+02 0.0064 27.2 16.0 151 216-377 48-205 (207)
56 PRK11519 tyrosine kinase; Prov 47.0 28 0.00061 41.0 5.3 34 524-557 265-298 (719)
57 cd08908 START_STARD12-like C-t 46.6 3.2E+02 0.0069 27.4 13.6 121 215-351 54-178 (204)
58 PRK03100 sec-independent trans 44.9 40 0.00087 31.9 4.9 48 525-572 27-75 (136)
59 cd04766 HTH_HspR Helix-Turn-He 44.8 35 0.00076 29.3 4.3 42 521-563 37-88 (91)
60 cd00584 Prefoldin_alpha Prefol 41.0 53 0.0011 29.8 5.1 42 524-565 85-126 (129)
61 PF00170 bZIP_1: bZIP transcri 40.6 65 0.0014 25.9 5.0 32 531-562 31-62 (64)
62 cd08873 START_STARD14_15-like 40.5 4.3E+02 0.0093 27.2 13.1 119 215-347 79-204 (235)
63 cd00632 Prefoldin_beta Prefold 40.4 58 0.0013 28.8 5.1 44 524-567 61-104 (105)
64 PF07798 DUF1640: Protein of u 39.5 60 0.0013 31.5 5.5 40 531-570 56-104 (177)
65 PRK10803 tol-pal system protei 38.9 47 0.001 34.4 4.9 39 527-565 55-93 (263)
66 PF06005 DUF904: Protein of un 38.7 78 0.0017 26.7 5.2 39 527-565 19-64 (72)
67 cd04789 HTH_Cfa Helix-Turn-Hel 38.7 73 0.0016 28.0 5.4 49 520-569 36-100 (102)
68 PF04484 DUF566: Family of unk 38.3 60 0.0013 34.7 5.6 42 528-569 182-226 (311)
69 cd08907 START_STARD8-like C-te 37.6 2.8E+02 0.0061 28.1 9.9 51 298-351 126-179 (205)
70 PF07716 bZIP_2: Basic region 37.5 75 0.0016 24.8 4.7 30 539-568 24-53 (54)
71 PF04156 IncA: IncA protein; 37.5 68 0.0015 31.0 5.5 33 540-572 158-190 (191)
72 cd08909 START_STARD13-like C-t 37.4 4.1E+02 0.009 26.7 11.1 51 298-351 126-179 (205)
73 PF04380 BMFP: Membrane fusoge 37.2 58 0.0013 27.7 4.3 30 539-568 49-78 (79)
74 TIGR01010 BexC_CtrB_KpsE polys 36.9 49 0.0011 35.4 4.8 33 524-556 168-200 (362)
75 PF04340 DUF484: Protein of un 36.8 38 0.00083 33.9 3.8 27 527-553 41-67 (225)
76 TIGR00293 prefoldin, archaeal 36.7 63 0.0014 29.2 4.8 40 524-563 84-123 (126)
77 PF05278 PEARLI-4: Arabidopsis 35.7 72 0.0016 33.5 5.5 39 527-565 167-211 (269)
78 PF08614 ATG16: Autophagy prot 35.5 76 0.0016 31.2 5.5 41 528-568 125-165 (194)
79 PHA03231 glycoprotein BALF4; P 35.1 25 0.00053 42.2 2.3 35 435-472 669-703 (829)
80 cd01201 Neurobeachin Neurobeac 35.0 33 0.00071 31.2 2.6 49 52-101 56-104 (108)
81 COG3461 Uncharacterized conser 34.8 41 0.0009 29.7 3.1 43 525-567 30-78 (103)
82 PF04977 DivIC: Septum formati 34.5 81 0.0017 25.7 4.8 35 532-566 16-50 (80)
83 TIGR03017 EpsF chain length de 34.5 36 0.00079 37.2 3.4 35 524-558 169-203 (444)
84 PRK00888 ftsB cell division pr 34.2 76 0.0016 28.5 4.8 35 533-567 27-61 (105)
85 cd08897 SRPBCC_CalC_Aha1-like_ 33.6 3.5E+02 0.0076 24.1 12.0 47 321-382 87-133 (133)
86 cd08861 OtcD1_ARO-CYC_like N-t 33.3 1.3E+02 0.0028 26.8 6.3 33 316-351 82-114 (142)
87 PF07334 IFP_35_N: Interferon- 32.3 56 0.0012 28.0 3.4 29 531-559 5-33 (76)
88 cd08862 SRPBCC_Smu440-like Lig 31.5 3.5E+02 0.0076 23.5 13.9 58 317-381 80-137 (138)
89 TIGR01005 eps_transp_fam exopo 31.3 42 0.0009 39.6 3.4 36 523-558 191-226 (754)
90 PRK14011 prefoldin subunit alp 31.1 87 0.0019 29.8 4.9 41 523-563 85-125 (144)
91 cd07824 SRPBCC_6 Ligand-bindin 30.3 4.1E+02 0.009 24.0 14.9 28 318-349 86-113 (146)
92 cd07816 Bet_v1-like Ligand-bin 30.0 4.5E+02 0.0098 24.3 17.7 113 215-345 3-117 (148)
93 PRK07720 fliJ flagellar biosyn 30.0 1.3E+02 0.0027 28.0 5.8 45 528-572 73-117 (146)
94 cd07818 SRPBCC_1 Ligand-bindin 29.9 4.1E+02 0.0088 23.8 14.7 59 318-381 91-149 (150)
95 PF03317 ELF: ELF protein; In 29.9 68 0.0015 32.3 4.0 44 525-568 238-281 (284)
96 COG4687 Uncharacterized protei 29.6 69 0.0015 29.4 3.7 52 52-108 46-99 (122)
97 cd01233 Unc104 Unc-104 pleckst 29.5 1.6E+02 0.0035 25.6 6.0 50 52-102 43-94 (100)
98 PRK09039 hypothetical protein; 29.3 81 0.0018 34.0 4.9 41 528-568 118-158 (343)
99 PF08172 CASP_C: CASP C termin 29.1 1E+02 0.0022 31.9 5.4 40 531-570 91-131 (248)
100 PRK13729 conjugal transfer pil 29.0 81 0.0018 35.6 4.9 38 527-564 77-121 (475)
101 COG3132 Uncharacterized protei 28.7 82 0.0018 31.3 4.3 23 545-567 190-212 (215)
102 smart00233 PH Pleckstrin homol 28.7 2E+02 0.0043 22.7 6.2 49 51-101 45-96 (102)
103 PF08286 Spc24: Spc24 subunit 28.4 19 0.00042 32.7 0.0 40 531-570 4-43 (118)
104 PF05377 FlaC_arch: Flagella a 28.3 1.2E+02 0.0025 24.5 4.4 35 534-568 1-35 (55)
105 PF10805 DUF2730: Protein of u 28.0 95 0.0021 27.8 4.4 44 524-567 33-78 (106)
106 KOG0971 Microtubule-associated 27.8 81 0.0018 38.2 4.8 44 524-567 292-345 (1243)
107 TIGR02338 gimC_beta prefoldin, 27.5 1.1E+02 0.0024 27.3 4.8 43 524-566 65-107 (110)
108 cd08913 START_STARD14-like Lip 27.4 7E+02 0.015 25.7 12.5 116 216-345 84-207 (240)
109 PF07352 Phage_Mu_Gam: Bacteri 26.7 1.1E+02 0.0024 28.8 4.8 46 524-569 1-54 (149)
110 PF09738 DUF2051: Double stran 26.5 1.2E+02 0.0026 32.4 5.5 45 525-569 125-169 (302)
111 cd07813 COQ10p_like Coenzyme Q 26.5 2.6E+02 0.0056 24.9 7.1 52 319-374 82-133 (138)
112 PRK04406 hypothetical protein; 26.2 1.9E+02 0.0042 24.4 5.7 41 531-571 9-57 (75)
113 cd01220 PH_CDEP Chondrocyte-de 25.9 2.2E+02 0.0048 25.1 6.3 35 52-87 45-79 (99)
114 PF14257 DUF4349: Domain of un 25.9 93 0.002 31.8 4.5 30 540-569 162-191 (262)
115 PF12958 DUF3847: Protein of u 25.8 1.3E+02 0.0029 26.3 4.7 33 535-567 3-35 (86)
116 PF06713 bPH_4: Bacterial PH d 25.5 2.5E+02 0.0054 23.3 6.2 48 52-99 19-70 (74)
117 cd04781 HTH_MerR-like_sg6 Heli 25.5 1.5E+02 0.0032 26.8 5.2 47 522-569 37-103 (120)
118 PRK02542 photosystem I assembl 24.8 99 0.0021 30.8 4.1 55 13-81 97-152 (188)
119 PRK13182 racA polar chromosome 24.5 91 0.002 30.6 3.9 21 519-539 34-54 (175)
120 PF12808 Mto2_bdg: Micro-tubul 24.3 1E+02 0.0023 24.5 3.4 24 543-566 25-48 (52)
121 TIGR03752 conj_TIGR03752 integ 24.3 2.4E+02 0.0052 32.0 7.5 46 520-565 53-98 (472)
122 TIGR03495 phage_LysB phage lys 24.1 1.7E+02 0.0038 27.6 5.5 42 528-569 14-55 (135)
123 TIGR03007 pepcterm_ChnLen poly 24.0 86 0.0019 34.9 4.1 34 524-557 159-192 (498)
124 PF04707 PRELI: PRELI-like fam 23.6 6.4E+02 0.014 23.9 14.7 75 308-383 79-154 (157)
125 PF08317 Spc7: Spc7 kinetochor 23.6 1.6E+02 0.0035 31.4 5.9 43 528-570 137-179 (325)
126 PF14182 YgaB: YgaB-like prote 23.5 1.1E+02 0.0024 26.4 3.6 24 546-569 39-62 (79)
127 PF10186 Atg14: UV radiation r 23.1 1.5E+02 0.0032 30.2 5.4 35 531-565 68-102 (302)
128 PRK05689 fliJ flagellar biosyn 23.0 2E+02 0.0043 26.6 5.8 45 528-572 73-117 (147)
129 PF10359 Fmp27_WPPW: RNA pol I 22.9 1.1E+02 0.0024 34.5 4.7 25 528-552 165-189 (475)
130 PF04156 IncA: IncA protein; 22.7 1E+02 0.0022 29.8 3.8 46 522-567 77-122 (191)
131 cd01239 PH_PKD Protein kinase 22.7 1.2E+02 0.0025 28.1 3.9 35 52-86 41-79 (117)
132 KOG0250 DNA repair protein RAD 22.6 1.1E+02 0.0024 37.7 4.8 50 522-571 368-418 (1074)
133 TIGR00293 prefoldin, archaeal 22.6 1.9E+02 0.0041 26.1 5.4 38 531-568 84-121 (126)
134 KOG2483 Upstream transcription 22.6 1E+02 0.0022 31.7 3.9 43 528-570 96-142 (232)
135 cd08899 SRPBCC_CalC_Aha1-like_ 22.4 6.2E+02 0.014 23.4 11.1 53 318-384 87-139 (157)
136 KOG3215 Uncharacterized conser 22.4 1.3E+02 0.0027 30.6 4.4 32 537-571 96-127 (222)
137 PRK10963 hypothetical protein; 22.3 95 0.0021 31.3 3.7 26 527-552 38-63 (223)
138 PRK09343 prefoldin subunit bet 22.1 1.8E+02 0.0039 26.6 5.1 42 525-566 70-111 (121)
139 PF14916 CCDC92: Coiled-coil d 22.0 1.9E+02 0.0041 23.7 4.6 30 543-572 6-36 (60)
140 PRK02119 hypothetical protein; 21.7 2.7E+02 0.0058 23.4 5.7 41 531-571 7-55 (73)
141 PRK03947 prefoldin subunit alp 21.6 2E+02 0.0043 26.6 5.4 38 531-568 92-129 (140)
142 COG5509 Uncharacterized small 21.5 1.1E+02 0.0024 25.1 3.1 23 527-549 26-48 (65)
143 PF01814 Hemerythrin: Hemeryth 21.5 1.8E+02 0.0038 25.0 4.8 36 534-569 48-93 (133)
144 KOG2196 Nuclear porin [Nuclear 21.4 1.4E+02 0.0031 30.9 4.6 38 533-570 113-150 (254)
145 cd01257 PH_IRS Insulin recepto 21.3 1.8E+02 0.004 25.8 4.8 35 52-87 50-84 (101)
146 PF06632 XRCC4: DNA double-str 21.2 1.6E+02 0.0034 32.0 5.2 41 526-566 130-170 (342)
147 PF04065 Not3: Not1 N-terminal 21.2 1.9E+02 0.0041 29.8 5.5 47 524-570 120-186 (233)
148 PRK13922 rod shape-determining 21.0 38 0.00082 34.9 0.5 90 482-571 12-107 (276)
149 cd08900 SRPBCC_CalC_Aha1-like_ 20.8 6.2E+02 0.013 22.7 15.3 50 320-381 93-142 (143)
150 PRK02793 phi X174 lysis protei 20.5 2.9E+02 0.0064 23.1 5.6 41 531-571 6-54 (72)
151 KOG0977 Nuclear envelope prote 20.5 1.3E+02 0.0029 34.6 4.6 38 529-566 320-368 (546)
152 cd01109 HTH_YyaN Helix-Turn-He 20.4 2.8E+02 0.0061 24.6 6.0 48 521-569 37-108 (113)
153 COG2867 Oligoketide cyclase/li 20.4 2.7E+02 0.0059 26.7 6.0 43 308-357 78-120 (146)
154 cd00821 PH Pleckstrin homology 20.1 3.4E+02 0.0073 21.1 5.9 43 51-95 43-86 (96)
No 1
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=100.00 E-value=5.6e-45 Score=404.26 Aligned_cols=442 Identities=23% Similarity=0.317 Sum_probs=316.3
Q ss_pred CceeceeeeeeecccCceeeeecceeeeeccccCccccccccccccccceeEEEeccceeEEEEeccccccCceEEEEeC
Q 008222 1 MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAVRRAKTAGIFPNAIEIFAA 80 (573)
Q Consensus 1 ~~~~~~~~~f~~~~~~~~~k~~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~dI~~I~K~~ta~i~pNaI~I~t~ 80 (573)
||++++|||||||||||++| ++|||.+|+.|+|++||++|||||+|.|+
T Consensus 141 myis~~~icF~s~i~gw~~~-------------------------------~vIpf~eI~~ikk~~tag~fpn~i~i~t~ 189 (590)
T KOG1032|consen 141 MYISEEHICFNSNIFGWETK-------------------------------VVIPFDEITLIKKTKTAGIFPNAIEITTG 189 (590)
T ss_pred cccccceeeecccccCccce-------------------------------eEEeeeeeeeeehhhhccCCCcceEEecC
Confidence 89999999999999999999 99999999999999999999999999999
Q ss_pred CcEEEEEeecChHHHHHHHHHHHhhcCCCCCCchhhcccCCCCCCCCCCcccccccccCCCCCCCCcCcccccccCCCCC
Q 008222 81 GKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDS 160 (573)
Q Consensus 81 ~~k~~F~SF~sRD~af~li~~~w~~~~~~~~~~~e~~~~~s~~ss~~~g~~~~e~~~~~~~~~~s~~~~~~~~~~~s~~s 160 (573)
+.+|+|+||++||+||++|.-+-+..-...........+...+ .. +....+ .+
T Consensus 190 ~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~----------------~~-~~~~~~--~~-------- 242 (590)
T KOG1032|consen 190 TTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSV----------------EP-EVNDDQ--QG-------- 242 (590)
T ss_pred CCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccC----------------CC-CcCccc--cc--------
Confidence 9999999999999999977333222110000000000000000 00 000000 00
Q ss_pred CCCCCCCCCCccccCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEeEEecCHHHHHhhhccCCchHH
Q 008222 161 KLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNF 240 (573)
Q Consensus 161 ~~p~~v~~t~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~e~~~~P~~~~~~~~l~e~~fpisv~~lF~lLF~D~s~~F 240 (573)
+++..+.+.. .+....++..+ .... ......+....++.+..|.+++..+|+++|+|+ .|
T Consensus 243 ----~~~~~~~~s~----~~~s~~~~~~e-------~~~~---~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~--~~ 302 (590)
T KOG1032|consen 243 ----NVDNSQSPSA----LQNSFDSPKEE-------ELEH---DFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDN--TF 302 (590)
T ss_pred ----ccccCCCccc----cccccCCCccc-------cccc---cccccccccccccccccccccccccceeeccCc--ce
Confidence 0000000000 00000000000 0000 001112233447889999999999999999976 58
Q ss_pred HHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEEEeeeCCe-EEEEEeeecCCCCCCCeeE
Q 008222 241 IESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSH-LVIETSQEVHDVPYGDYFR 319 (573)
Q Consensus 241 l~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i~~~~~~~-yVVet~t~t~DVPYGDsF~ 319 (573)
+..|.+.++..++...+|.....+...|.++|++++..+.|||+|.|..+|++.+++... |.|..++.|++||||++|+
T Consensus 303 ~~~~l~~~~~~~vs~~~~~~~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~ 382 (590)
T KOG1032|consen 303 FFFFLEDQDEIQVSPIPWKGPRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFY 382 (590)
T ss_pred eeeccccccccccccccccCCCccceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceee
Confidence 899999999999999999988888899999999999999999999999999999988654 7789999999999999999
Q ss_pred EEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCcccccc
Q 008222 320 VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEEGGPAYSTVQ 399 (573)
Q Consensus 320 Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v~~l~e~lk~~~~k~~~~~~~~~~~~~ 399 (573)
|.+||+|.|+ +++.|+++++++|.|.|++|.+.+++.++. ..+.+++.+.++++.. +...+..+.
T Consensus 383 v~~~y~i~~~---~~~~~~l~v~~~V~~~~~sw~~~~~~~~~~-----~~k~lv~~~~~~~~~~--e~~~~~~~~----- 447 (590)
T KOG1032|consen 383 VKTRYLISRA---GSNSCKLKVSTSVEWTKSSWDVPVSEIGSN-----TLKDLVEILEKLLENG--EELAKNQEK----- 447 (590)
T ss_pred eeEEEEEEec---CCcceeecceeEEEeccCchhhcccccccc-----chhhHHHHHHHHHhcc--HHHHHhhcc-----
Confidence 9999999997 457999999999999999999999988776 4444555555555411 111111111
Q ss_pred cCCccccceeccccccccccccCCccccccccCcccccccccccccccccchHHHHHHHHHHHhhhhccccccCCceeeh
Q 008222 400 NDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLIL 479 (573)
Q Consensus 400 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (573)
...+.. +++ ..++.. . . +.-. -..++|.|.+-.+..+++.+...+.
T Consensus 448 ----~~~~~~------~~~---~~~v~~---~---~-----~~v~----------~~~~~~~~~~~i~~~~~~~~~~~i~ 493 (590)
T KOG1032|consen 448 ----EDELTY------EGS---PWEVEK---P---G-----GTVR----------QLSYKEVWNKPISPDKREVTLLQVV 493 (590)
T ss_pred ----cccccc------cCC---CccccC---C---C-----ceee----------eeccccccccccccccccceeEEEE
Confidence 000000 000 000100 0 0 0000 1114455777777788888888888
Q ss_pred hhHHHHHHHHhheeeeeecCCCceeecCCCcccCCCcccCCCCCCCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 008222 480 VIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVL 559 (573)
Q Consensus 480 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~ 559 (573)
+.+...|++|+..|+.|...|-.-+.+.|.+|- .+...+..-..+..|+++|++-||+.|.+|++..+.||...+.|
T Consensus 494 ~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~---~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~k~~~r~~~~~l 570 (590)
T KOG1032|consen 494 VLVPLKILWLLNTILFLHDVPFGSYFEVHERYR---EALDETSKVKTTLVWVSFRIEWLKDIKMEARKIKQILRNDQDLL 570 (590)
T ss_pred EEehhhhhHHHHHHhhccCCCCccceeeehhhh---hhhcccchhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 888888999999999999999999999999994 34456667788999999999999999999999999999999999
Q ss_pred HHHHhhHHHhhhc
Q 008222 560 RAQLKDIEQLHKR 572 (573)
Q Consensus 560 ~~~~~~~~~~~~~ 572 (573)
+..+..||+|.++
T Consensus 571 ~~~~~~l~~~~~~ 583 (590)
T KOG1032|consen 571 EVLFSLLEKLSQS 583 (590)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998753
No 2
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=98.19 E-value=1.6e-06 Score=70.87 Aligned_cols=35 Identities=34% Similarity=0.864 Sum_probs=31.7
Q ss_pred CceeceeeeeeecccCcee-eeecceeeeeccccCccccccccccccccceeEEEeccceeEEEEec
Q 008222 1 MYLFVHFICFYSNIFGFET-KVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAVRRAK 66 (573)
Q Consensus 1 ~~~~~~~~~f~~~~~~~~~-k~~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~dI~~I~K~~ 66 (573)
|||+.+|+||||+.+|..+ + ++|||.||.+|+|++
T Consensus 34 LyiT~~~lcF~s~~~~~~~~~-------------------------------~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 34 LYITNNYLCFYSNKFGSKTCK-------------------------------FVIPLSDIKSIEKET 69 (69)
T ss_dssp EEEESSEEEEEESSSSS-E-E-------------------------------EEEEGGGEEEEEEE-
T ss_pred EEECCCEEEEEECCCCCceEE-------------------------------EEEEhHheeEEEEeC
Confidence 7999999999999999998 7 999999999999974
No 3
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=98.06 E-value=2.9e-06 Score=67.66 Aligned_cols=35 Identities=29% Similarity=0.572 Sum_probs=32.8
Q ss_pred CceeceeeeeeecccCcee-eeecceeeeeccccCccccccccccccccceeEEEeccceeEEEEec
Q 008222 1 MYLFVHFICFYSNIFGFET-KVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAVRRAK 66 (573)
Q Consensus 1 ~~~~~~~~~f~~~~~~~~~-k~~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~dI~~I~K~~ 66 (573)
|||+.+|+||||+.+|+.+ + ++||+.||.+|+|.+
T Consensus 26 lyiT~~~l~F~S~~~~~~~~~-------------------------------~~ipl~~I~~i~k~~ 61 (61)
T smart00568 26 LYISNYRLCFRSDLPGKLTPK-------------------------------VVIPLADITRIEKST 61 (61)
T ss_pred EEEECCEEEEEccCCCCeeEE-------------------------------EEEEHHHeeEEEECC
Confidence 6999999999999999999 8 999999999999963
No 4
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=97.01 E-value=0.063 Score=51.09 Aligned_cols=150 Identities=16% Similarity=0.163 Sum_probs=103.8
Q ss_pred EeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeee-ccc-----CCCceeeeeEEE
Q 008222 218 ETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPI-KVY-----FGAKFGSCKETQ 291 (573)
Q Consensus 218 e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL-~~p-----~GPKst~c~etQ 291 (573)
...||+|++++|.+|.+. .|++.-++..|..+..+..-....++ .+..+.-..|- +.| |-|..-...+++
T Consensus 4 ~~~~~~~~~~v~~~~~d~---~y~~~r~~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTDE---DYWEARCAALGADNAEVESFEVDGDG-VRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred EEEcCCCHHHHHHHHcCH---HHHHHHHHHcCCCCceEEEEEEcCCe-EEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 578999999999977665 48888888777766666655444433 33333333343 222 444455666667
Q ss_pred EEEeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHH
Q 008222 292 KFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAM 371 (573)
Q Consensus 292 ~i~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~ 371 (573)
+....++..+........+ |.-..+.....++.. ..+|++.+.+.|.- |=+++-++||+.+.+.+.+.+..
T Consensus 80 ~w~~~~~g~~~g~~~~~~~----G~P~~~~G~~~L~~~----~~gt~~~~~g~v~v-~VPlvGgkiE~~v~~~~~~~~~~ 150 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIP----GAPVSISGTMRLRPD----GGGTRLTVEGEVKV-KVPLVGGKIEKAVAENLRKLLEA 150 (159)
T ss_pred EEecCCCCeEEEEEEEEec----CceEEEEEEEEEecC----CCCEEEEEEEEEEE-EEccccHHHHHHHHHHHHHHHHH
Confidence 6533345666666555555 556789999999884 45899999988875 45789999999999999999888
Q ss_pred HHHHHHHHH
Q 008222 372 WIGMAHDVL 380 (573)
Q Consensus 372 ~v~~l~e~l 380 (573)
-.+.+.+.|
T Consensus 151 e~~~~~~wl 159 (159)
T PF10698_consen 151 EQEFTAEWL 159 (159)
T ss_pred HHHHHHhhC
Confidence 777776653
No 5
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=95.10 E-value=0.012 Score=67.23 Aligned_cols=134 Identities=15% Similarity=0.183 Sum_probs=82.4
Q ss_pred HHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEEEeeeC-CeEEEEEeeecCCCCCCCeeEEEEE
Q 008222 245 HRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRN-SHLVIETSQEVHDVPYGDYFRVEGL 323 (573)
Q Consensus 245 ~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i~~~~~-~~yVVet~t~t~DVPYGDsF~Ve~R 323 (573)
+..-++..+..++|.....++..|...|.---..+++|....+...|......+ ..++++..+..+|+|||++|.|+.|
T Consensus 445 ~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~i~~~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r 524 (590)
T KOG1032|consen 445 QEKEDELTYEGSPWEVEKPGGTVRQLSYKEVWNKPISPDKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHER 524 (590)
T ss_pred hcccccccccCCCccccCCCceeeeeccccccccccccccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehh
Confidence 333344556666899666778889888875445556676667777776655554 5677888999999999999999999
Q ss_pred EEEEecCCC-CCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhc
Q 008222 324 WDVMRDDGG-SKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQK 383 (573)
Q Consensus 324 ~~It~~~~~-s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v~~l~e~lk~~ 383 (573)
|. ...... ....+++.++..|.|. .+-+++.............+.+++..+++..
T Consensus 525 ~~-~~~~~~~~v~~~~~~~~~~~~~l----~~~~~~~~~~k~~~r~~~~~l~~~~~~l~~~ 580 (590)
T KOG1032|consen 525 YR-EALDETSKVKTTLVWVSFRIEWL----KDIKMEARKIKQILRNDQDLLEVLFSLLEKL 580 (590)
T ss_pred hh-hhhcccchhhhhhHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 96 211100 1112222333333333 3444455555555555555666665555544
No 6
>PF14470 bPH_3: Bacterial PH domain
Probab=94.23 E-value=0.31 Score=41.51 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=52.2
Q ss_pred cceeeeeccccCccccccccccccccceeEEEeccceeEEEEeccccccCceEEEEeCCcEEEEEeecChHHHHHHHH
Q 008222 23 SKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLIT 100 (573)
Q Consensus 23 ~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~dI~~I~K~~ta~i~pNaI~I~t~~~k~~F~SF~sRD~af~li~ 100 (573)
..+.-.++-||+|+.|-.--...+ ..-..|||.+|.+|+.++ +++.+.|.|.|+++++.|.++ ..+.+=.++.
T Consensus 20 ~~~~g~l~~TnkRlif~~~~~~~~--~~~~~i~y~~I~~v~~~~--g~~~~~i~i~~~~~~~~i~~i-~k~~~~~~~~ 92 (96)
T PF14470_consen 20 TSFPGVLVLTNKRLIFYSKGMFGG--KKFESIPYDDITSVSFKK--GILGGKITIETNGEKIKIDNI-QKGDVKEFYE 92 (96)
T ss_pred cCceeEEEEeCCEEEEEEcccCCC--ceEEEEEhhheEEEEEEc--cccccEEEEEECCEEEEEEEc-CHHHHHHHHH
Confidence 455667777889984433210000 112899999999999997 567889999999999999999 6666644443
No 7
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=92.41 E-value=11 Score=36.31 Aligned_cols=143 Identities=8% Similarity=0.022 Sum_probs=77.1
Q ss_pred eEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeeccc--CCCceeeeeEEE
Q 008222 214 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVY--FGAKFGSCKETQ 291 (573)
Q Consensus 214 ~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p--~GPKst~c~etQ 291 (573)
..-...+++++++++|+++..-+ ...+|...+....+. .. . +....+.|.. ++.| +.+... +-..
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~e---~~~~w~~~~~~~~vi-e~---~---~~~~~i~~~~-~~~p~pvs~Rdf--v~~~ 108 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDTE---SYPQWMPNCKESRVL-KR---T---DDNERSVYTV-IDLPWPVKDRDM--VLRS 108 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhhH---hHHHHHhhcceEEEe-ec---C---CCCcEEEEEE-EecccccCCceE--EEEE
Confidence 45566789999999999876433 445554433322221 11 1 1112333332 1222 223321 1112
Q ss_pred EEEe-eeCCeEEEEEeeecCCCCCCC----eeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHH
Q 008222 292 KFRV-YRNSHLVIETSQEVHDVPYGD----YFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECR 366 (573)
Q Consensus 292 ~i~~-~~~~~yVVet~t~t~DVPYGD----sF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~k 366 (573)
+... .++..+++.......++|-.. -+.....|.|++.+ +++|+|.....+.+. ..+-+.+|...+.....
T Consensus 109 ~~~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~---~~~t~vt~~~~~dp~-g~iP~~lv~~~~~~~~~ 184 (195)
T cd08876 109 TTEQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLG---NGKTRVTYQAYADPG-GSIPGWLANAFAKDAPY 184 (195)
T ss_pred EEEEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECC---CCeEEEEEEEEeCCC-CCCCHHHHHHHHHHHHH
Confidence 2211 124556666554434456432 25666789999873 568999999999995 46667777666655555
Q ss_pred HHHHHHH
Q 008222 367 DVYAMWI 373 (573)
Q Consensus 367 e~~~~~v 373 (573)
..+..+-
T Consensus 185 ~~l~~l~ 191 (195)
T cd08876 185 NTLENLR 191 (195)
T ss_pred HHHHHHH
Confidence 4444443
No 8
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=92.35 E-value=0.071 Score=60.63 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=61.1
Q ss_pred CceeceeeeeeecccCceeeeecceeeeeccccCccccccccccccccceeEEEeccceeEEEEeccccccCceEEEEeC
Q 008222 1 MYLFVHFICFYSNIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAVRRAKTAGIFPNAIEIFAA 80 (573)
Q Consensus 1 ~~~~~~~~~f~~~~~~~~~k~~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~dI~~I~K~~ta~i~pNaI~I~t~ 80 (573)
||++.+|+||.|.-.+- -. +++|+..|+.|+|......||+-|.+.|.
T Consensus 43 l~~s~~f~cF~s~~~~~-c~-------------------------------~~~Pl~~vr~ve~~~~ss~~~~~i~~~~~ 90 (671)
T KOG4347|consen 43 LFLSTNFICFASDTEWL-CS-------------------------------FITPLLAVRSVERLDDSSLFTQLISLFTS 90 (671)
T ss_pred eeeccceEEeecCCccc-ce-------------------------------EeeehhhhhhhhccCccccchhhhHHhhc
Confidence 68999999999875432 34 89999999999999977899999999885
Q ss_pred C-cEEEEEeecChHHHHHHHHHHHhh
Q 008222 81 G-KKYFFASFLSRDEAFKLITDGWLQ 105 (573)
Q Consensus 81 ~-~k~~F~SF~sRD~af~li~~~w~~ 105 (573)
+ -.+.|..+..|++.+--+...-..
T Consensus 91 ~~~~~~f~~~~~r~~~~~k~~~~~~~ 116 (671)
T KOG4347|consen 91 NMVGMRFGGLTERLKLLSKLHLPPAR 116 (671)
T ss_pred CcceEEecchhhHHHHHHHHhchHhh
Confidence 4 689999999999998777665554
No 9
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=91.58 E-value=9.3 Score=34.00 Aligned_cols=59 Identities=7% Similarity=-0.025 Sum_probs=39.0
Q ss_pred CCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHHHHHHHH
Q 008222 315 GDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDV 379 (573)
Q Consensus 315 GDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v~~l~e~ 379 (573)
+.......+|.++.. +++|+|.....+.+.+ .++.+...-.....++....+++.+++.
T Consensus 84 ~~~~~~~~~~~l~~~----~~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~~ 142 (144)
T cd05018 84 AGFVKGTARVTLEPD----GGGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLASK 142 (144)
T ss_pred CceEEEEEEEEEEec----CCcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999985 3589999999999764 3444444444445555555555555443
No 10
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=91.19 E-value=6.9 Score=38.91 Aligned_cols=147 Identities=8% Similarity=-0.019 Sum_probs=80.3
Q ss_pred EEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCC-CCceEEEEEEeeeccc---CCCceeeeeEEEE
Q 008222 217 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE-FGYSRDLSFQHPIKVY---FGAKFGSCKETQK 292 (573)
Q Consensus 217 ~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~-~~~tR~vsYt~PL~~p---~GPKst~c~etQ~ 292 (573)
.+.++++|++++++.+|.|-. ...++.. .+..-...+. +..+ .+.|..-...| +.+..- +..+.
T Consensus 53 ~e~~i~~~~~~l~~~l~~d~e--~~~~W~~-------~~~~~~vl~~id~~~-~i~y~~~~p~p~~~vs~RD~--V~~~~ 120 (209)
T cd08905 53 LEVVVDQPLDNLYSELVDRME--QMGEWNP-------NVKEVKILQRIGKDT-LITHEVAAETAGNVVGPRDF--VSVRC 120 (209)
T ss_pred EEEEecCCHHHHHHHHHhchh--hhceecc-------cchHHHHHhhcCCCc-eEEEEEeccCCCCccCccce--EEEEE
Confidence 678999999999988887632 1111111 1111111011 1112 23343222222 344322 22333
Q ss_pred EEeeeCCeEEEEEeeecCCCCC-CCeeE---EEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHH
Q 008222 293 FRVYRNSHLVIETSQEVHDVPY-GDYFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDV 368 (573)
Q Consensus 293 i~~~~~~~yVVet~t~t~DVPY-GDsF~---Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~ 368 (573)
....++.++++..+...+..|= -++-+ ..+.|.|++.+. .+++|++...+.++..+. +=+.++.+...+..-++
T Consensus 121 ~~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~-~~~~t~v~~~~~~DpkG~-iP~~lvN~~~~~~~~~~ 198 (209)
T cd08905 121 AKRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAG-DPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDF 198 (209)
T ss_pred EEEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCC-CCCceEEEEEEeecCCCC-CCHHHHHHHhHHhHHHH
Confidence 3333444455555555555553 34433 557899999742 236899999999998653 44677777777777777
Q ss_pred HHHHHHHHH
Q 008222 369 YAMWIGMAH 377 (573)
Q Consensus 369 ~~~~v~~l~ 377 (573)
+..+-+.+.
T Consensus 199 ~~~Lr~~~~ 207 (209)
T cd08905 199 ANHLRQRMA 207 (209)
T ss_pred HHHHHHHHh
Confidence 777665553
No 11
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=90.99 E-value=7.7 Score=38.19 Aligned_cols=147 Identities=10% Similarity=0.011 Sum_probs=75.6
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccC-CCCceEEEEEEe--e-ecccCCCceeeeeEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHY-EFGYSRDLSFQH--P-IKVYFGAKFGSCKET 290 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~-~~~~tR~vsYt~--P-L~~p~GPKst~c~et 290 (573)
.-++.++++|++++|..++.|.. ...++ |-.+.....-+ .++.++ +.|.. | ...|+.+.. ....
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~--~~~~W-------d~~~~~~~~i~~~d~~~~-i~y~~~~~~~~~~vs~RD--fV~~ 117 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVE--SLPSW-------NPTVLECKIIQVIDDNTD-ISYQVAAEAGGGLVSPRD--FVSL 117 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCcc--cccee-------cCcccceEEEEEecCCcE-EEEEEecCcCCCcccccc--eEEE
Confidence 44578899999999998886642 11111 11111111100 012233 33421 1 112333432 2222
Q ss_pred EEEEeeeCCeEEE-EEeeecCCCCCCCee-E---EEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHH
Q 008222 291 QKFRVYRNSHLVI-ETSQEVHDVPYGDYF-R---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEEC 365 (573)
Q Consensus 291 Q~i~~~~~~~yVV-et~t~t~DVPYGDsF-~---Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ 365 (573)
++....+ +.|+| ..+..-+..|-..-| + ..+.|+|++.+. +.++|++...+.++..++ +=+.++.+.+.+.+
T Consensus 118 r~~~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~-~~~~t~v~~~~~~Dp~G~-iP~~lvN~~~~~~~ 194 (208)
T cd08868 118 RHWGIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPN-NPNKCNFTWLLNTDLKGW-LPQYLVDQALASVL 194 (208)
T ss_pred EEEEecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCC-CCCceEEEEEEEECCCCC-CcceeeehhhHHHH
Confidence 3333333 34544 444443566654443 3 448899999742 346899999999998764 33444555555555
Q ss_pred HHHHHHHHHHH
Q 008222 366 RDVYAMWIGMA 376 (573)
Q Consensus 366 ke~~~~~v~~l 376 (573)
-+.++.+-+.+
T Consensus 195 ~~~~~~Lr~~~ 205 (208)
T cd08868 195 LDFMKHLRKRI 205 (208)
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 12
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=90.96 E-value=9.8 Score=38.03 Aligned_cols=146 Identities=7% Similarity=-0.029 Sum_probs=81.4
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCC-CCceEEEEEEeeec---ccCCCceeeeeEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE-FGYSRDLSFQHPIK---VYFGAKFGSCKET 290 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~-~~~tR~vsYt~PL~---~p~GPKst~c~et 290 (573)
.-++.+++++++++|+.++.... |+..|-.+..-..-+. +..+ .+.|.+.-. +.++|..- ...
T Consensus 48 ~k~egvi~~~~e~v~~~l~~~e~----------r~~Wd~~~~~~~iie~Id~~T-~I~~~~~~~~~~~~vspRDf--V~v 114 (204)
T cd08904 48 YRVEGIIPESPAKLIQFMYQPEH----------RIKWDKSLQVYKMLQRIDSDT-FICHTITQSFAMGSISPRDF--VDL 114 (204)
T ss_pred EEEEEEecCCHHHHHHHHhccch----------hhhhcccccceeeEEEeCCCc-EEEEEecccccCCcccCceE--EEE
Confidence 45789999999999998766431 1111112111111110 1111 344433221 12666532 222
Q ss_pred EEEEeeeCCeEEEEE-eeecCCC-CCCCeeEEE---EEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHH
Q 008222 291 QKFRVYRNSHLVIET-SQEVHDV-PYGDYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEEC 365 (573)
Q Consensus 291 Q~i~~~~~~~yVVet-~t~t~DV-PYGDsF~Ve---~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ 365 (573)
+....++++.|++-. ++.-+.. |=.++.+.+ +-|++.+.+. .+++|+|..+..++..+ .+=+++|++..-..+
T Consensus 115 r~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~-~p~~t~l~~~~~~DlkG-~lP~~vv~~~~~~~~ 192 (204)
T cd08904 115 VHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPE-NPAYSKLVMFVQPELRG-NLSRSVIEKTMPTNL 192 (204)
T ss_pred EEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCC-CCCceEEEEEEEeCCCC-CCCHHHHHHHhHHHH
Confidence 233334666666533 4433443 334544444 5688988743 34589999999988853 555888888877777
Q ss_pred HHHHHHHHHH
Q 008222 366 RDVYAMWIGM 375 (573)
Q Consensus 366 ke~~~~~v~~ 375 (573)
.+++..+-+.
T Consensus 193 ~~f~~~~~~~ 202 (204)
T cd08904 193 VNLILDAKDG 202 (204)
T ss_pred HHHHHHHHHh
Confidence 7777765443
No 13
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=90.59 E-value=0.31 Score=42.95 Aligned_cols=47 Identities=26% Similarity=0.486 Sum_probs=35.5
Q ss_pred EEEeccceeEEEEeccccccCceEEEEeCCcEEEEEee---cChHHHHHHH
Q 008222 52 KIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASF---LSRDEAFKLI 99 (573)
Q Consensus 52 ~~Ip~~dI~~I~K~~ta~i~pNaI~I~t~~~k~~F~SF---~sRD~af~li 99 (573)
..+|+.||..|.|..- .+=++||+|.+.+++=+|-.| -.||++|+.|
T Consensus 56 ~~w~~~~I~~v~~RRy-llr~~AlEiF~~dg~s~f~~F~~~~~R~~v~~~l 105 (106)
T PF14844_consen 56 KRWPLSDIKEVHKRRY-LLRDTALEIFFSDGRSYFFNFESKKERDEVYNKL 105 (106)
T ss_dssp EEEEGGGEEEEEEEEE-TTEEEEEEEEETTS-EEEEE-SSHHHHHHHHCCS
T ss_pred EEEEHHHhHHHHHHHh-cCcceEEEEEEcCCcEEEEEcCCHHHHHHHHHhh
Confidence 8999999999999984 455999999996666556666 4677777543
No 14
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=89.28 E-value=22 Score=35.42 Aligned_cols=150 Identities=12% Similarity=0.049 Sum_probs=79.7
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCC-CCceEEEEEEe--e-ecccCCCceeeeeEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE-FGYSRDLSFQH--P-IKVYFGAKFGSCKET 290 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~-~~~tR~vsYt~--P-L~~p~GPKst~c~et 290 (573)
.-++.++++|++.+|..+|.|-. . +...|-.+..=+.-.. +...+ +.|.. | ...|+.+. ..+..
T Consensus 51 fk~~~~v~~~~~~l~~~ll~D~~--~-------~~~W~~~~~~~~vi~~~~~~~~-i~Y~v~~p~~~~pv~~R--DfV~~ 118 (209)
T cd08906 51 FILKAFMQCPAELVYQEVILQPE--K-------MVLWNKTVSACQVLQRVDDNTL-VSYDVAAGAAGGVVSPR--DFVNV 118 (209)
T ss_pred EEEEEEEcCCHHHHHHHHHhChh--h-------ccccCccchhhhheeeccCCcE-EEEEEccccccCCCCCC--ceEEE
Confidence 35678899999999976766642 1 1111111111111011 11222 34522 1 11233333 22222
Q ss_pred EEEEeeeCCeEEEEEeeecCCCC-CCCeeEEE---EEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHH
Q 008222 291 QKFRVYRNSHLVIETSQEVHDVP-YGDYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECR 366 (573)
Q Consensus 291 Q~i~~~~~~~yVVet~t~t~DVP-YGDsF~Ve---~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~k 366 (573)
.+.....++++++..++..+.+| .-++-+++ +.|.+...+ .++++|++...+.++..+ .+=+.+|.+...+..-
T Consensus 119 r~~~~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~-~~~~~t~vt~~~~~Dp~G-~lP~~lvN~~~~~~~~ 196 (209)
T cd08906 119 RRIERRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSA-SNPSVCTFIWILNTDLKG-RLPRYLIHQSLAATMF 196 (209)
T ss_pred EEEEecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECC-CCCCceEEEEEEecCCCC-CCCHHHHHHHHHHHHH
Confidence 33322333333455555555555 44555555 445555421 246799999999998865 4447788888888888
Q ss_pred HHHHHHHHHHHH
Q 008222 367 DVYAMWIGMAHD 378 (573)
Q Consensus 367 e~~~~~v~~l~e 378 (573)
+++..+-+.+.+
T Consensus 197 ~~~~~LR~~~~~ 208 (209)
T cd08906 197 EFASHLRQRIRD 208 (209)
T ss_pred HHHHHHHHHHhh
Confidence 888877766653
No 15
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=89.04 E-value=13 Score=36.91 Aligned_cols=79 Identities=14% Similarity=0.061 Sum_probs=48.1
Q ss_pred CCeEEEEEeeecCCCCCCCee-E---EEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHH
Q 008222 298 NSHLVIETSQEVHDVPYGDYF-R---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWI 373 (573)
Q Consensus 298 ~~~yVVet~t~t~DVPYGDsF-~---Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v 373 (573)
+..+++..+...+++|-.+.+ + ....|+|++. ++++|++...+.++..++- =+.++.+-+....-..++.+-
T Consensus 122 ~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~---~~~~t~vt~~~~~Dp~G~I-P~~lvN~~~~~~~~~~l~~l~ 197 (222)
T cd08871 122 GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPT---GPKGCTLTYVTQNDPKGSL-PKWVVNKATTKLAPKVMKKLH 197 (222)
T ss_pred CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEEC---CCCCEEEEEEEecCCCCCc-CHHHHHHHHHHHhHHHHHHHH
Confidence 333556666777788866542 2 3456889886 3568999999999987642 234444444444445555555
Q ss_pred HHHHHHH
Q 008222 374 GMAHDVL 380 (573)
Q Consensus 374 ~~l~e~l 380 (573)
+.+.+|-
T Consensus 198 k~~~~y~ 204 (222)
T cd08871 198 KAALKYP 204 (222)
T ss_pred HHHHHHH
Confidence 5555443
No 16
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=88.82 E-value=16 Score=32.11 Aligned_cols=129 Identities=8% Similarity=0.048 Sum_probs=62.2
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccC-CCCceEEEEEEeeecccCCCceeeeeEEEEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHY-EFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 293 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~-~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i 293 (573)
+..+.++++|++++|+++-..+. +..+.. +...+. +.... ..+..|.+.+. .| . ...+++
T Consensus 3 i~~~~~i~a~~~~V~~~l~d~~~---~~~w~~--~~~~~~---~~~~~~~~g~~~~~~~~------~g-~----~~~~~i 63 (140)
T cd07821 3 VTVSVTIDAPADKVWALLSDFGG---LHKWHP--AVASCE---LEGGGPGVGAVRTVTLK------DG-G----TVRERL 63 (140)
T ss_pred EEEEEEECCCHHHHHHHHhCcCc---hhhhcc--CcceEE---eecCCCCCCeEEEEEeC------CC-C----EEEEEe
Confidence 45678899999999998876543 223332 112222 11111 12344433321 23 1 112444
Q ss_pred EeeeC--CeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHH
Q 008222 294 RVYRN--SHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAM 371 (573)
Q Consensus 294 ~~~~~--~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~ 371 (573)
...+. ..+.+.... .+.|+. .....|.++..+ +++|+|.......-.+. +.-..+.+...+.....++.
T Consensus 64 ~~~~~~~~~i~~~~~~--~~~~~~---~~~~~~~~~~~~---~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 134 (140)
T cd07821 64 LALDDAERRYSYRIVE--GPLPVK---NYVATIRVTPEG---DGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAA 134 (140)
T ss_pred hhcCccCCEEEEEecC--CCCCcc---cceEEEEEEECC---CCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHH
Confidence 43332 333333221 134443 357889999863 44788887776554432 33333344333334444333
No 17
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=87.83 E-value=25 Score=33.32 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=84.0
Q ss_pred eEEEEeEEecCHHHHHhhhccCCchHHHHHHH-HHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEE
Q 008222 214 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFH-RKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQK 292 (573)
Q Consensus 214 ~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~-~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~ 292 (573)
+...+...++|+++||.++.. .+.++.+.+ ..-..-++.-+.|.. +|..|.++|.. -|| . ...+|+
T Consensus 5 ~~~~E~~~~~~a~k~~ka~~~--~~~llpki~P~~i~sve~~eGdgg~---gGSIk~~~f~~-----~~~-~--~~~Kek 71 (151)
T PF00407_consen 5 KLEVEVEVKVSADKLWKAFKS--SPHLLPKILPHVIKSVEVVEGDGGP---GGSIKKWTFGP-----GGP-F--KYVKEK 71 (151)
T ss_dssp EEEEEEEESS-HHHHHHHHTT--HHHHHHHHSTTTEEEEEEEESSSST---TT-EEEEEEET-----TSS-E--EEEEEE
T ss_pred EEEEEEEecCCHHHHHHHHhc--CccchhhhChhhceeEEEEccCCCC---CCeEEEEEecC-----CCC-c--ceeEEE
Confidence 456788899999999998766 346777654 222344555688854 36889888876 133 2 345788
Q ss_pred EEeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhc-hHHHHHHHHHH
Q 008222 293 FRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQS-TLEECRDVYAM 371 (573)
Q Consensus 293 i~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEks-t~~g~ke~~~~ 371 (573)
+...+.....+..+..-.|+ .+++..-.....+.+. +.++|.++..+. |.+.. +.. .-+...+....
T Consensus 72 ve~~D~~~~~~~y~viEGd~-l~~~~~~~~~~~~~~~---~~g~~v~k~t~~--Ye~~~------~~~~~p~~~~~~~~~ 139 (151)
T PF00407_consen 72 VEAIDEENKTITYTVIEGDV-LGDYKSFKSTIQKIPK---GDGGCVVKWTIE--YEKKG------EDVPPPEKYLDFAVG 139 (151)
T ss_dssp EEEEETTTTEEEEEEEEETT-GTTTEEEEEEEEEEEE---TTSCEEEEEEEE--EEESS------TSCHHHHHHHHHHHH
T ss_pred EEeecCCCcEEEEEEEeccc-cccEEEEEEEEEecCC---CCCceEEEEEEE--EEecC------CCCCCcHHHHHHHHH
Confidence 88888664444444443442 3444444444444443 244576665544 54321 222 34555666777
Q ss_pred HHHHHHHHHhh
Q 008222 372 WIGMAHDVLKQ 382 (573)
Q Consensus 372 ~v~~l~e~lk~ 382 (573)
+.+.+..||-+
T Consensus 140 ~~K~ieayLla 150 (151)
T PF00407_consen 140 MFKAIEAYLLA 150 (151)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888887754
No 18
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=84.77 E-value=29 Score=32.47 Aligned_cols=122 Identities=13% Similarity=0.068 Sum_probs=62.8
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR 294 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i~ 294 (573)
.-...++++|+++++++++..+. ...+-.......+. .. ...+.......|..| .|+.|..--+.. ...
T Consensus 41 ~k~~~~i~~~~~~v~~~l~d~~~---~~~w~~~~~~~~vl-~~---~~~~~~i~~~~~~~p--~p~~~Rdfv~~~--~~~ 109 (193)
T cd00177 41 LKAEGVIPASPEQVFELLMDIDL---RKKWDKNFEEFEVI-EE---IDEHTDIIYYKTKPP--WPVSPRDFVYLR--RRR 109 (193)
T ss_pred EEEEEEECCCHHHHHHHHhCCch---hhchhhcceEEEEE-EE---eCCCeEEEEEEeeCC--CccCCccEEEEE--EEE
Confidence 45678899999999998887442 22221111111110 00 111111111122222 234554322222 111
Q ss_pred eee-CCeEEEEEeeecCCCCCC-CeeEEEE---EEEEEecCCCCCCceEEEEEEEEEEccc
Q 008222 295 VYR-NSHLVIETSQEVHDVPYG-DYFRVEG---LWDVMRDDGGSKEGCILRVYVNVAFSKK 350 (573)
Q Consensus 295 ~~~-~~~yVVet~t~t~DVPYG-DsF~Ve~---R~~It~~~~~s~~~CrL~V~~~V~F~Ks 350 (573)
... +..+++..+...+.+|-. ++-+.+. -|+|++. ++++|++...+.++..++
T Consensus 110 ~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~---~~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 110 KLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPL---DPGKTKVTYVLQVDPKGS 167 (193)
T ss_pred EcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEEC---CCCCEEEEEEEeeCCCCC
Confidence 122 344555555554446655 5555554 3889887 467999999999998764
No 19
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=83.65 E-value=44 Score=32.26 Aligned_cols=150 Identities=7% Similarity=-0.018 Sum_probs=79.9
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecc-cCCCceeeeeEEEEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKV-YFGAKFGSCKETQKF 293 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~-p~GPKst~c~etQ~i 293 (573)
.-+..+++.++.++|..++.|.. ...++...+....+. . ..+.+ .+-+-+...... |+.|..- |.... .
T Consensus 47 ~k~~~~v~~~~~~~~~~~~~d~~--~r~~Wd~~~~~~~~i-e---~~~~~--~~i~~~~~~~~~~p~~~RDf-v~~r~-~ 116 (206)
T smart00234 47 SRAVGVVPMVCADLVEELMDDLR--YRPEWDKNVAKAETL-E---VIDNG--TVIYHYVSKFVAGPVSPRDF-VFVRY-W 116 (206)
T ss_pred EEEEEEEecChHHHHHHHHhccc--chhhCchhcccEEEE-E---EECCC--CeEEEEEEecccCcCCCCeE-EEEEE-E
Confidence 44568889899887766666542 333332222211110 1 11112 232223332222 4444321 22212 2
Q ss_pred EeeeCCeEE-EEEeeecCCCCC-CCee---EEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHH
Q 008222 294 RVYRNSHLV-IETSQEVHDVPY-GDYF---RVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDV 368 (573)
Q Consensus 294 ~~~~~~~yV-Vet~t~t~DVPY-GDsF---~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~ 368 (573)
....++.|+ +..+...+.+|- ..+. .....|+|++.+ ++.|++...+.++..+. +=+.++..-.....-+.
T Consensus 117 ~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~---~~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~ 192 (206)
T smart00234 117 RELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG---NGPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEF 192 (206)
T ss_pred EEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECC---CCCeEEEEEEEEecCCC-ccceeehhhhhhhHHHH
Confidence 122344454 444556666663 3333 356789999873 55799999999999774 34666666666666666
Q ss_pred HHHHHHHHHH
Q 008222 369 YAMWIGMAHD 378 (573)
Q Consensus 369 ~~~~v~~l~e 378 (573)
++.|.+.+++
T Consensus 193 ~~~~~~~~~~ 202 (206)
T smart00234 193 AKTWVATLQK 202 (206)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 20
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=80.85 E-value=3.3 Score=37.18 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=39.4
Q ss_pred cchHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 008222 526 ESIPWLERRMHYL--KDEMLMVEARLERMWHEHAVLRAQLKDIEQLHK 571 (573)
Q Consensus 526 ~~~~w~~~r~~~~--~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (573)
.-+.=||.++.|| ++++...+..|.+||-|..-|.++|+.++|+-.
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455578888888 999999999999999999999999999988743
No 21
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=79.97 E-value=66 Score=31.89 Aligned_cols=153 Identities=8% Similarity=-0.005 Sum_probs=81.9
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeee--cccCCCceeeeeEEEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPI--KVYFGAKFGSCKETQK 292 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL--~~p~GPKst~c~etQ~ 292 (573)
.-.+.+++++++++|++++.... .+-.++...+....+. +.. +..+..+.+..|- .+.+.|..- +-.+.
T Consensus 48 ~k~e~~i~~s~~~~~~~l~d~~~-~~r~~W~~~~~~~~vl----e~i--d~~~~i~~~~~p~~~~~~vs~RDf--V~~~~ 118 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLKPAAG-GLRVKWDQNVKDFEVV----EAI--SDDVSVCRTVTPSAAMKIISPRDF--VDVVL 118 (208)
T ss_pred EEEEEEecCCHHHHHHHHHhccc-hhhhhhhhccccEEEE----EEe--cCCEEEEEEecchhcCCCcCCCce--EEEEE
Confidence 34789999999999999974432 1111111111111110 001 1223322222221 122445432 22233
Q ss_pred EEeeeCCeEEEEEeeecC-CC-CCCCeeEEEE---EEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHH
Q 008222 293 FRVYRNSHLVIETSQEVH-DV-PYGDYFRVEG---LWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRD 367 (573)
Q Consensus 293 i~~~~~~~yVVet~t~t~-DV-PYGDsF~Ve~---R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke 367 (573)
....+++.|++......+ .. |-.++.+++. -|.+...+. ++++|++..++.+++.+ .+=+++|.+...+.+.+
T Consensus 119 ~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~-~~~~t~v~~~~~~DpkG-~iP~~lvn~~~~~~~~~ 196 (208)
T cd08903 119 VKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPG-EPDKTQLVSFFQTDLSG-YLPQTVVDSFFPASMAE 196 (208)
T ss_pred EEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCC-CCCceEEEEEEEeccCC-CcCHHHHHHHhhHHHHH
Confidence 334455556554433222 33 3456766644 345555432 45689999999999954 44577888777788888
Q ss_pred HHHHHHHHHHH
Q 008222 368 VYAMWIGMAHD 378 (573)
Q Consensus 368 ~~~~~v~~l~e 378 (573)
++..+-+.+++
T Consensus 197 ~~~~Lr~~~~~ 207 (208)
T cd08903 197 FYNNLTKAVKA 207 (208)
T ss_pred HHHHHHHHHhh
Confidence 88887777654
No 22
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=78.12 E-value=55 Score=29.88 Aligned_cols=53 Identities=11% Similarity=-0.020 Sum_probs=34.6
Q ss_pred CCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccc--cchhhhhhchHHHHHHH
Q 008222 312 VPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT--VWKGKIVQSTLEECRDV 368 (573)
Q Consensus 312 VPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT--~~Ks~IEkst~~g~ke~ 368 (573)
.+-+....+...|.+... .++|+|.+...+...+.- +++.+|++-+..-+.++
T Consensus 82 ~~~~g~~~~~~~~~l~~~----~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~ 136 (146)
T cd07823 82 ARGQGTAEATVTLRLSPA----GGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQF 136 (146)
T ss_pred CCCcceEEEEEEEEEEec----CCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHH
Confidence 455556688888888873 358999999999887642 45555555443333333
No 23
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=76.83 E-value=5.1 Score=33.19 Aligned_cols=41 Identities=20% Similarity=0.435 Sum_probs=33.5
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 527 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
-+|++|..+..|-+.+.--..+|++|++++.+|+.+|+.++
T Consensus 12 ~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 12 KLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47888999999999999999999999999999999999886
No 24
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=75.43 E-value=88 Score=30.88 Aligned_cols=152 Identities=7% Similarity=0.023 Sum_probs=82.5
Q ss_pred EEEEeEE-ecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEE
Q 008222 215 KVAETNF-QMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 293 (573)
Q Consensus 215 ~l~e~~f-pisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i 293 (573)
.....+| ++|++.|++++...+ +-.++...+....+. ...+ ....+.+-|....--|+-+.. .+...+.
T Consensus 52 ~k~~~~~~~~s~~~~~~~l~D~~---~r~~Wd~~~~~~~~l----e~~~-~~~~~i~y~~~~~P~P~s~RD--~V~~r~~ 121 (209)
T cd08870 52 YLVRGVFEDCTPELLRDFYWDDE---YRKKWDETVIEHETL----EEDE-KSGTEIVRWVKKFPFPLSDRE--YVIARRL 121 (209)
T ss_pred EEEEEEEcCCCHHHHHHHHcChh---hHhhhhhheeeEEEE----EecC-CCCcEEEEEEEECCCcCCCce--EEEEEEE
Confidence 4556778 679999999886654 333333332221111 1111 112343333333333454542 2221222
Q ss_pred EeeeCCeE-EEEEeeecCCCCCCCeeE---EEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHH
Q 008222 294 RVYRNSHL-VIETSQEVHDVPYGDYFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVY 369 (573)
Q Consensus 294 ~~~~~~~y-VVet~t~t~DVPYGDsF~---Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~ 369 (573)
....++.+ ++.....-+.+|-.++-+ ....|+|++.+ .++++|++.+.+..+- +..+=+.++...+..++-..+
T Consensus 122 ~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~-~~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l 199 (209)
T cd08870 122 WESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVK-GDGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFL 199 (209)
T ss_pred EEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEec-CCCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHH
Confidence 22224444 444455556888764443 45789998863 1355788777777664 445556777777777777777
Q ss_pred HHHHHHHHH
Q 008222 370 AMWIGMAHD 378 (573)
Q Consensus 370 ~~~v~~l~e 378 (573)
+.+-+.+++
T Consensus 200 ~~l~~a~~~ 208 (209)
T cd08870 200 KKLENALRK 208 (209)
T ss_pred HHHHHHHhc
Confidence 777766644
No 25
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=75.30 E-value=5.4 Score=35.92 Aligned_cols=43 Identities=23% Similarity=0.475 Sum_probs=39.1
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 566 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~ 566 (573)
-.||+..|++|+..|+.++.-.+..+.+++.++..|+..|..+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3569999999999999999999999999999999999988754
No 26
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=75.25 E-value=80 Score=30.30 Aligned_cols=144 Identities=11% Similarity=0.008 Sum_probs=80.6
Q ss_pred EEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEe-ccccccCCCCceEEEEEE-eeecc--cCCCceeeeeEEE
Q 008222 216 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKC-TSWHRHYEFGYSRDLSFQ-HPIKV--YFGAKFGSCKETQ 291 (573)
Q Consensus 216 l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~-spW~~~~~~~~tR~vsYt-~PL~~--p~GPKst~c~etQ 291 (573)
-+..++++++.++|..++.+.. .+ +..+.. .--...+++ ..+.|. ..... |+-|.. .....
T Consensus 49 k~~~~v~~~~~~~~~~~~~~~~-----~W-----d~~~~~~~~le~~~~~---~~i~~~~~~~~~~~p~~~RD--fv~~~ 113 (206)
T PF01852_consen 49 KAEGVVPASPEQVVEDLLDDRE-----QW-----DKMCVEAEVLEQIDED---TDIVYFVMKSPWPGPVSPRD--FVFLR 113 (206)
T ss_dssp EEEEEESSCHHHHHHHHHCGGG-----HH-----STTEEEEEEEEEEETT---EEEEEEEEE-CTTTTSSEEE--EEEEE
T ss_pred EEEEEEcCChHHHHHHHHhhHh-----hc-----ccchhhheeeeecCCC---CeEEEEEecccCCCCCCCcE--EEEEE
Confidence 4567899999999998888762 11 112211 111111111 222222 22222 444432 22222
Q ss_pred EEEeeeCCe-EEEEEeeecCCCCC--CCeeEEE---EEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHH
Q 008222 292 KFRVYRNSH-LVIETSQEVHDVPY--GDYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEEC 365 (573)
Q Consensus 292 ~i~~~~~~~-yVVet~t~t~DVPY--GDsF~Ve---~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ 365 (573)
......++. +++..+...+..|- .++-+++ ..|+|++.+ ++.|++.....++..++. -+.++..-+.+++
T Consensus 114 ~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~---~~~~~vt~~~~~D~~G~i-P~~~~n~~~~~~~ 189 (206)
T PF01852_consen 114 SWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLG---DGRTRVTYVSQVDPKGWI-PSWLVNMVVKSQP 189 (206)
T ss_dssp EEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEET---TCEEEEEEEEEEESSSSS-HHHHHHHHHHHHH
T ss_pred EEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEcc---CCCceEEEEEEECCCCCC-hHHHHHHHHHHhH
Confidence 222223444 45666677777774 5655544 679999983 556999999999986643 3555556666667
Q ss_pred HHHHHHHHHHHHH
Q 008222 366 RDVYAMWIGMAHD 378 (573)
Q Consensus 366 ke~~~~~v~~l~e 378 (573)
-+.++.+.+.+++
T Consensus 190 ~~~~~~~~~~~~~ 202 (206)
T PF01852_consen 190 PNFLKNLRKALKK 202 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666655
No 27
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=73.80 E-value=60 Score=31.85 Aligned_cols=118 Identities=7% Similarity=-0.048 Sum_probs=61.9
Q ss_pred EEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCC-CCceEEEEEEeeecccCCCceeeeeEE-EEE
Q 008222 216 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE-FGYSRDLSFQHPIKVYFGAKFGSCKET-QKF 293 (573)
Q Consensus 216 l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~-~~~tR~vsYt~PL~~p~GPKst~c~et-Q~i 293 (573)
-.+.++++++++++.+++... ...|-.+..++.-+. +....-+.|..+.-.|+-+.. .+.. ...
T Consensus 47 K~~~~v~a~~~~v~~~l~d~r------------~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RD--fV~~r~~~ 112 (197)
T cd08869 47 RASTEVEAPPEEVLQRILRER------------HLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRD--YVVLRTWR 112 (197)
T ss_pred EEEEEeCCCHHHHHHHHHHHH------------hccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCce--EEEEEEEE
Confidence 457889999999999776321 222222222221111 111222334433322333332 2222 122
Q ss_pred EeeeCCeEEEEEeee-c-CCCCCCCee---EEEEEEEEEecCCCCCCceEEEEEEEEEEcccc
Q 008222 294 RVYRNSHLVIETSQE-V-HDVPYGDYF---RVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT 351 (573)
Q Consensus 294 ~~~~~~~yVVet~t~-t-~DVPYGDsF---~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT 351 (573)
...+++.|+|..... - ..+|= ++. ...+.|.|++. ++++|+|...+.++..+..
T Consensus 113 ~~~~~g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~p~---~~~~t~vty~~~~Dp~G~i 171 (197)
T cd08869 113 TDLPKGACVLVETSVEHTEPVPL-GGVRAVVLASRYLIEPC---GSGKSRVTHICRVDLRGRS 171 (197)
T ss_pred ecCCCCcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEEEC---CCCCeEEEEEEEECCCCCC
Confidence 122334455444333 2 25655 544 44578999997 3579999999999998764
No 28
>PRK09039 hypothetical protein; Validated
Probab=72.93 E-value=4.3 Score=43.66 Aligned_cols=71 Identities=23% Similarity=0.237 Sum_probs=57.7
Q ss_pred eehhhHHHHHHHH--hheeeeeecCCCceeecCCCcccCCCcccCCCCCCCcchHHHHHHhhchhhHHHHHHHHHHHHHH
Q 008222 477 LILVIAFAVIFLM--QVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWH 554 (573)
Q Consensus 477 ~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~ 554 (573)
|++|+.|++.+|| |++. + ...++=.+.|+=|+.+|.-|-|-..|-..+..+++.
T Consensus 26 ll~~~~f~l~~f~~~q~fL-------------s-----------~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~ 81 (343)
T PRK09039 26 LLLVIMFLLTVFVVAQFFL-------------S-----------REISGKDSALDRLNSQIAELADLLSLERQGNQDLQD 81 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------H-----------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 6788888887777 8776 1 112334577888999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHhhh
Q 008222 555 EHAVLRAQLKDIEQLHK 571 (573)
Q Consensus 555 ~~~~~~~~~~~~~~~~~ 571 (573)
+.+.|++++..++..|.
T Consensus 82 ~l~~l~~~l~~a~~~r~ 98 (343)
T PRK09039 82 SVANLRASLSAAEAERS 98 (343)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998888775
No 29
>PRK00295 hypothetical protein; Provisional
Probab=72.39 E-value=10 Score=31.45 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=37.3
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 527 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
-+|+.|.-|..|-+.+.--...|.+|++...+|+.+|++++
T Consensus 13 kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 13 RQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 37888999999999999999999999999999999999876
No 30
>PRK02793 phi X174 lysis protein; Provisional
Probab=72.16 E-value=9.4 Score=32.03 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=36.7
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 527 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
-+++.|+-|..|-+.+.--...+.+|+++..+|+.+|+.++
T Consensus 16 ~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 16 RLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 37888999999999999999999999999999999998875
No 31
>smart00338 BRLZ basic region leucin zipper.
Probab=70.94 E-value=8.2 Score=31.20 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=31.6
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008222 527 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLK 564 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~ 564 (573)
-+.=||.+++.|..|-.-..++++.|+.|+..||.++.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35558888888988888888889999999998888764
No 32
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=68.60 E-value=7.9 Score=34.58 Aligned_cols=42 Identities=21% Similarity=0.387 Sum_probs=28.5
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 565 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~ 565 (573)
-.||+++|++|+..|++.+...+..+..++.....+.+.|..
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999988876665555555555555555544443
No 33
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=68.08 E-value=1.3e+02 Score=29.57 Aligned_cols=149 Identities=11% Similarity=0.054 Sum_probs=74.6
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeee--cccCCCceeeeeEEEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPI--KVYFGAKFGSCKETQK 292 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL--~~p~GPKst~c~etQ~ 292 (573)
.-++.+++++++++|.+++.... ....++ +.++.-...-..- +..+.-+.|..|- ..++.|.. .+..+.
T Consensus 48 ~k~~~~i~~~~~~v~~~l~d~~~-~~r~~W-----d~~~~~~~~le~i-d~~~~i~~~~~p~~~~~~vs~RD--fV~~~~ 118 (206)
T cd08867 48 YRAEGIVDALPEKVIDVIIPPCG-GLRLKW-----DKSLKHYEVLEKI-SEDLCVGRTITPSAAMGLISPRD--FVDLVY 118 (206)
T ss_pred EEEEEEEcCCHHHHHHHHHhcCc-cccccc-----cccccceEEEEEe-CCCeEEEEEEccccccCccCCcc--eEEEEE
Confidence 45678899999999998877221 010111 1111100000000 1123323332222 11233332 222233
Q ss_pred EEeeeCCeEEEE-EeeecCCCCCC-CeeE---EEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHH
Q 008222 293 FRVYRNSHLVIE-TSQEVHDVPYG-DYFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRD 367 (573)
Q Consensus 293 i~~~~~~~yVVe-t~t~t~DVPYG-DsF~---Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke 367 (573)
...++++.|++. .++.-|..|=- ++-+ ....|.+.+.+. ++++|++...+.++..+ .+=+.++.+.+.+.+-+
T Consensus 119 ~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~-~~~~t~~~~~~~~DpkG-~iP~~lvn~~~~~~~~~ 196 (206)
T cd08867 119 VKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKG-SPDKSFLVLYVQTDLRG-MIPQSLVESAMPSNLVN 196 (206)
T ss_pred EEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCC-CCCceEEEEEEEeccCC-CCcHHHHHhhhhhhHHH
Confidence 334444445433 34444566543 4333 346788887532 35689999999999865 55566666666666655
Q ss_pred HHHHHHH
Q 008222 368 VYAMWIG 374 (573)
Q Consensus 368 ~~~~~v~ 374 (573)
+++.+-+
T Consensus 197 ~~~~lr~ 203 (206)
T cd08867 197 FYTDLVK 203 (206)
T ss_pred HHHHHHH
Confidence 5555433
No 34
>PRK04325 hypothetical protein; Provisional
Probab=68.04 E-value=13 Score=31.36 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=36.4
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 527 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
-+|+.|+-|..|-+.+.--...|.+|++...+|..+|+.++
T Consensus 17 klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 17 QLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37888888999999999999999999999999999998875
No 35
>PRK02119 hypothetical protein; Provisional
Probab=67.17 E-value=14 Score=31.15 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=35.4
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 527 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
-+++.|+-+..|-+.+.--...|.+|+.++.+|+.+|+.++
T Consensus 17 rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 17 KIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36788888888999888888889999999999999888875
No 36
>PRK04406 hypothetical protein; Provisional
Probab=67.12 E-value=14 Score=31.38 Aligned_cols=41 Identities=12% Similarity=0.301 Sum_probs=35.1
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 527 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
-+|+.|.-|..|-+.+.--...|++|++++.+|+.+|+.++
T Consensus 19 ~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 19 QLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36788888888889888888889999999999998888765
No 37
>PRK00736 hypothetical protein; Provisional
Probab=66.23 E-value=16 Score=30.39 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=37.2
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 527 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
-+|+.|+-|..|-+.+.--...|.+|++...+|+.+|+.++
T Consensus 13 klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 13 RVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37899999999999999999999999999999999998865
No 38
>PRK00846 hypothetical protein; Provisional
Probab=65.85 E-value=16 Score=31.32 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=36.9
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
+||.|.-|..|-+.+.--...+.+|++...+|+.+|+.++
T Consensus 22 lAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 22 LSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6888888899999999999999999999999999999886
No 39
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=62.14 E-value=1.7e+02 Score=29.00 Aligned_cols=145 Identities=6% Similarity=-0.007 Sum_probs=77.0
Q ss_pred EEEeEEe-cCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEEE
Q 008222 216 VAETNFQ-MKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR 294 (573)
Q Consensus 216 l~e~~fp-isv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i~ 294 (573)
-...+|+ ++++.|++++...+ +-.++...+... +.. ... ..+.+-+....-.|+.+..--+.. +..
T Consensus 52 k~~~~~~~~s~~~~~~~l~D~~---~r~~Wd~~~~~~-~~~-----~~~--~~~i~y~~~k~PwPvs~RD~V~~r--~~~ 118 (207)
T cd08910 52 KVFGVLEDCSPSLLADVYMDLE---YRKQWDQYVKEL-YEK-----ECD--GETVIYWEVKYPFPLSNRDYVYIR--QRR 118 (207)
T ss_pred EEEEEEcCCCHHHHHHHHhCHH---HHHHHHHHHHhh-eee-----cCC--CCEEEEEEEEcCCCCCCceEEEEE--Eec
Confidence 3467888 89999999887654 333332222110 111 111 133333333333444554332221 211
Q ss_pred eee--CCe-EE-EEEeeecCCCCCCCeeE----EEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHH
Q 008222 295 VYR--NSH-LV-IETSQEVHDVPYGDYFR----VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECR 366 (573)
Q Consensus 295 ~~~--~~~-yV-Vet~t~t~DVPYGDsF~----Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~k 366 (573)
..+ +.. ++ +.....-|++|-.+-|. ....|+|++. ++++|++..++..+-.+ .+=+.++..-+.++.-
T Consensus 119 ~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~---~~~~t~i~~~~~~DPgG-~IP~wlvN~~~~~~~~ 194 (207)
T cd08910 119 DLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESD---GKKGSKVFMYYFDNPGG-MIPSWLINWAAKNGVP 194 (207)
T ss_pred cccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeC---CCCceEEEEEEEeCCCC-cchHHHHHHHHHHhhH
Confidence 222 222 33 34455567778665443 6688999875 35689999999888643 3335555555666666
Q ss_pred HHHHHHHHHHH
Q 008222 367 DVYAMWIGMAH 377 (573)
Q Consensus 367 e~~~~~v~~l~ 377 (573)
.+++.+-+.++
T Consensus 195 ~~l~~l~ka~~ 205 (207)
T cd08910 195 NFLKDMQKACQ 205 (207)
T ss_pred HHHHHHHHHHh
Confidence 66666555543
No 40
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=60.95 E-value=23 Score=30.53 Aligned_cols=47 Identities=26% Similarity=0.336 Sum_probs=40.8
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc
Q 008222 526 ESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 572 (573)
Q Consensus 526 ~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
.-+.+|+.++..++.+...++..+++.|.++.--....|-+|.|+.+
T Consensus 52 ~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~ 98 (123)
T PF02050_consen 52 RYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKER 98 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999988888888999988754
No 41
>PRK10724 hypothetical protein; Provisional
Probab=60.45 E-value=1.6e+02 Score=28.10 Aligned_cols=35 Identities=14% Similarity=0.374 Sum_probs=25.9
Q ss_pred EEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhh
Q 008222 319 RVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKI 357 (573)
Q Consensus 319 ~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~I 357 (573)
..++.|.+.+.+ +++|+|.....++| |+.++..+.
T Consensus 98 ~l~g~W~f~p~~---~~~t~V~~~l~fef-~s~l~~~~~ 132 (158)
T PRK10724 98 KLIGGWKFTPLS---QEACRIEFHLDFEF-TNKLIELAF 132 (158)
T ss_pred hccceEEEEECC---CCCEEEEEEEEEEE-chHHHHHHH
Confidence 388999999973 45799999998887 445555333
No 42
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=60.09 E-value=1.4e+02 Score=30.50 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=51.9
Q ss_pred EEEEEeeecCCCCCC-CeeEEEEE---------------EEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHH
Q 008222 301 LVIETSQEVHDVPYG-DYFRVEGL---------------WDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEE 364 (573)
Q Consensus 301 yVVet~t~t~DVPYG-DsF~Ve~R---------------~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g 364 (573)
.++..+..-+++|=. ++.++... |.+++ .+.+|++...+.++.-+ .+=++.|..-+..+
T Consensus 138 vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~----~~~~~~ity~~~~dPgG-~iP~wvvn~~~k~~ 212 (235)
T cd08872 138 IVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR----DNILCKITYVANVNPGG-WAPASVLRAVYKRE 212 (235)
T ss_pred EEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC----CCCeEEEEEEEEeCCCC-CccHHHHHHHHHhh
Confidence 345556666777655 66666642 33443 25689999999888754 33367777777777
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 008222 365 CRDVYAMWIGMAHDVLKQKN 384 (573)
Q Consensus 365 ~ke~~~~~v~~l~e~lk~~~ 384 (573)
.-.+.+.|-..+.+..|.++
T Consensus 213 ~P~~l~~~~~~~~~~~~~~~ 232 (235)
T cd08872 213 YPKFLKRFTSYVQEKTKGKP 232 (235)
T ss_pred chHHHHHHHHHHHHhcCCCc
Confidence 77777777777776665543
No 43
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=58.16 E-value=2.1e+02 Score=28.67 Aligned_cols=122 Identities=7% Similarity=-0.053 Sum_probs=64.3
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccC--CCceeeeeEEEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYF--GAKFGSCKETQK 292 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~--GPKst~c~etQ~ 292 (573)
...+.++++|+++++++|..-....-|.. .....++-. + .+...+-+.++.+.--|+ -|..- +..++
T Consensus 47 ~~ge~~v~as~~~v~~ll~D~~~r~~Wd~---~~~~~~vl~---~---~~~d~~i~y~~~~~Pwp~~~~~RDf--V~l~~ 115 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVKDPRTRFLYDT---MIKTARIHK---T---FTEDICLVYLVHETPLCLLKQPRDF--CCLQV 115 (205)
T ss_pred EEEEEEEcCCHHHHHHHHhCcchhhhhHH---hhhheeeee---e---cCCCeEEEEEEecCCCCCCCCCCeE--EEEEE
Confidence 44678999999999998844332122222 112222211 0 112334444444333222 33322 22223
Q ss_pred EEeeeCCeEEEEEeeecC-CCC-CC-Ce---eEEEEEEEEEecCCCCCCceEEEEEEEEEEc
Q 008222 293 FRVYRNSHLVIETSQEVH-DVP-YG-DY---FRVEGLWDVMRDDGGSKEGCILRVYVNVAFS 348 (573)
Q Consensus 293 i~~~~~~~yVVet~t~t~-DVP-YG-Ds---F~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~ 348 (573)
. ...++.++|......+ .+| -+ ++ +.+...|.|++...+++++|+|...+.++=.
T Consensus 116 ~-~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPg 176 (205)
T cd08874 116 E-AKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALC 176 (205)
T ss_pred E-EECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCC
Confidence 2 3345555554433333 666 33 34 5677899999963334668999999888865
No 44
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=57.71 E-value=10 Score=42.45 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhhccccc-cCCceeehh-hHHHHHHHH
Q 008222 454 IASLLRESMTKCCSFVKR-QSGVSLILV-IAFAVIFLM 489 (573)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~ 489 (573)
|-..++|+=.-|..+||+ .+|..|+++ .||.||+-+
T Consensus 541 INeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsL 578 (632)
T KOG3910|consen 541 INEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSL 578 (632)
T ss_pred HHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHH
Confidence 678899988788888885 468888777 899988888
No 45
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=55.16 E-value=1.7e+02 Score=26.69 Aligned_cols=98 Identities=13% Similarity=0.180 Sum_probs=60.8
Q ss_pred EEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEEEee
Q 008222 217 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVY 296 (573)
Q Consensus 217 ~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i~~~ 296 (573)
+...+++|+++||+.|-. ....++.+..|.. +.. ... .-++|.+.++. +. .+++..+ .+.
T Consensus 3 I~~~l~v~a~~ff~~l~~----s~~~DI~~~tgk~-~~~--------~~L-~G~~Y~K~~~~--~~-~~~v~It---~~~ 62 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLID----SLLYDIKQATGKK-LPV--------KQL-KGFSYQKKFKN--KR-EAKVKIT---EYE 62 (120)
T ss_pred EEEEecCCHHHHHHHHHH----HHHHHHHHHcCCC-CCh--------hhc-CCcEEEEEcCC--CC-EEEEEEE---EEc
Confidence 457899999999998765 3667777665543 111 112 34688888875 22 3344433 233
Q ss_pred eCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEE
Q 008222 297 RNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNV 345 (573)
Q Consensus 297 ~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V 345 (573)
++..|.+...+. .|. ...+|.+...+ .+.|+|...=.+
T Consensus 63 ~~~~Y~~~~~s~-----~~~---~~i~Y~i~~~~---~~~~~v~y~E~~ 100 (120)
T PF11687_consen 63 PNKRYAATFSSS-----RGT---FTISYEIEPLD---DGSIEVTYEEEY 100 (120)
T ss_pred CCCEEEEEEEec-----CCC---EEEEEEEEECC---CCcEEEEEEEEE
Confidence 577888887643 222 67789999873 446777655444
No 46
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=54.79 E-value=2.2e+02 Score=28.02 Aligned_cols=149 Identities=11% Similarity=0.063 Sum_probs=79.3
Q ss_pred eEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEe-eecccCCCceeeeeEEEE
Q 008222 214 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQH-PIKVYFGAKFGSCKETQK 292 (573)
Q Consensus 214 ~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~-PL~~p~GPKst~c~etQ~ 292 (573)
..-++.++++|+..+..++..-+ ...++...+..... +. ..+....+.|.+ -+--|++....-+. .+.
T Consensus 47 ~~k~e~~i~~~~~~~~~vl~d~~---~~~~W~p~~~~~~~-l~------~~~~~~~v~y~~~~~PwPv~~RD~v~~-~~~ 115 (215)
T cd08877 47 SLRMEGEIDGPLFNLLALLNEVE---LYKTWVPFCIRSKK-VK------QLGRADKVCYLRVDLPWPLSNREAVFR-GFG 115 (215)
T ss_pred EEEEEEEecCChhHeEEEEehhh---hHhhhcccceeeEE-Ee------ecCCceEEEEEEEeCceEecceEEEEE-EEE
Confidence 45678899999999999776654 33333322221111 11 111223344432 22233455543322 344
Q ss_pred EEee-eCCeEEEEEeeecC--C--------CCCCC-e----eEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhh
Q 008222 293 FRVY-RNSHLVIETSQEVH--D--------VPYGD-Y----FRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGK 356 (573)
Q Consensus 293 i~~~-~~~~yVVet~t~t~--D--------VPYGD-s----F~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~ 356 (573)
+... .++.++|......+ + +|=.+ . -.....|.|++. ++++|++...+.++-.++-+=+.+
T Consensus 116 ~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~---~~~~t~v~~~~~~DP~g~~IP~~l 192 (215)
T cd08877 116 VDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPI---SPTKCYLRFVANVDPKMSLVPKSL 192 (215)
T ss_pred EeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEc---CCCCeEEEEEEEcCCCcccCCHHH
Confidence 4333 44556555443321 1 55554 2 346778999987 467999999999887554122445
Q ss_pred hhhchHHHHHHHHHHHHHHH
Q 008222 357 IVQSTLEECRDVYAMWIGMA 376 (573)
Q Consensus 357 IEkst~~g~ke~~~~~v~~l 376 (573)
|..-+..-....+..+.+.+
T Consensus 193 iN~~~k~~~~~~~~~l~k~~ 212 (215)
T cd08877 193 LNFVARKFAGLLFEKIQKAA 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554444
No 47
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=54.37 E-value=12 Score=32.80 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=33.3
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 529 PWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 529 ~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
+....++.-|++++..+|+++++++.+...++++++-|+
T Consensus 66 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 66 ESDSPELKELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345678899999999999999999999999999988764
No 48
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=52.99 E-value=26 Score=35.82 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=36.7
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 008222 531 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH 570 (573)
Q Consensus 531 ~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 570 (573)
.++|+..+.||....+++++.+..|..+|+.+.+.|+++-
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v 79 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQV 79 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999988764
No 49
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=52.54 E-value=23 Score=32.71 Aligned_cols=51 Identities=24% Similarity=0.263 Sum_probs=35.4
Q ss_pred EEEeccceeEEEEecc--ccccCceEEEEeCC-cEEEEEeecChHHHHHHHHHHHhhcC
Q 008222 52 KIIPFYEVTAVRRAKT--AGIFPNAIEIFAAG-KKYFFASFLSRDEAFKLITDGWLQHG 107 (573)
Q Consensus 52 ~~Ip~~dI~~I~K~~t--a~i~pNaI~I~t~~-~k~~F~SF~sRD~af~li~~~w~~~~ 107 (573)
|.|||.+|..|.-.-. ...+|- ..|.|.. ++|.|+|== +=.+|..+.+..+
T Consensus 46 IQIPW~eI~~V~a~V~fkgk~I~R-F~I~Tk~~G~f~Fsskd----~k~~Lk~~r~yv~ 99 (118)
T PF06115_consen 46 IQIPWEEIDYVIASVSFKGKWIPR-FAIFTKKNGKFTFSSKD----SKKVLKAIRKYVG 99 (118)
T ss_pred EEeChhheeEEEEEEEECCCEEee-EEEEECCCCEEEEEECC----hHHHHHHHHHhcC
Confidence 9999999999875543 245674 8899975 899998733 2345555555543
No 50
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=52.43 E-value=33 Score=30.81 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=22.1
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 531 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 531 ~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
+++++..++.|..-++++-++|+.|...||.-..-+|
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiE 68 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIE 68 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 4556666666666666666666666666665333333
No 51
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=51.67 E-value=36 Score=30.97 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=40.9
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc
Q 008222 527 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 572 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
-+..|..+|...+.++..++++++..|.++.--....+-+|.|+.+
T Consensus 69 f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~ek 114 (141)
T TIGR02473 69 FIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEKLKEK 114 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999988888888899998754
No 52
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=50.25 E-value=25 Score=41.59 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=30.5
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERMWHEH 556 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~ 556 (573)
...+++||++|+..|++|+.-||.+|+..|.++
T Consensus 265 a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 265 DSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456899999999999999999999999999977
No 53
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=49.77 E-value=20 Score=29.15 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=25.0
Q ss_pred CCCcchHHHHHHhhchhhHHHHHHHHHHHH
Q 008222 523 RSAESIPWLERRMHYLKDEMLMVEARLERM 552 (573)
Q Consensus 523 ~~~~~~~w~~~r~~~~~~e~~~~e~~~~~~ 552 (573)
-|.=|++=|+.||.+|+.|+.-+|+.+.+=
T Consensus 18 Ls~lSv~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 18 LSLLSVEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred chhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566689999999999999998888777653
No 54
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=47.28 E-value=40 Score=31.19 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=37.7
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
-.||+.-|++|+..|.+.+...+..++.++.++..+...|..+.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999988888888888888888888877664
No 55
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=47.26 E-value=2.9e+02 Score=27.23 Aligned_cols=151 Identities=8% Similarity=-0.008 Sum_probs=74.9
Q ss_pred EEEeEE-ecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEEE
Q 008222 216 VAETNF-QMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR 294 (573)
Q Consensus 216 l~e~~f-pisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i~ 294 (573)
-...+| ++|+++|++++...+ +-.++...+....+... . ....++-+-+..-.-.|+-+. ..+...++.
T Consensus 48 k~~~~~~d~s~~~~~~~~~D~~---~r~~Wd~~~~~~~~le~----~-~~~~~~i~y~~~~~P~P~s~R--D~V~~r~~~ 117 (207)
T cd08911 48 KVYGSFDDVTARDFLNVQLDLE---YRKKWDATAVELEVVDE----D-PETGSEIIYWEMQWPKPFANR--DYVYVRRYI 117 (207)
T ss_pred EEEEEEcCCCHHHHHHHHhCHH---HHHHHHhhheeEEEEEc----c-CCCCCEEEEEEEECCCCCCCc--cEEEEEEEE
Confidence 344667 899999999888654 44444333322222110 0 011223222222222233332 222223332
Q ss_pred eeeC-CeEEEEEe-eecCCCCCCCee----EEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHH
Q 008222 295 VYRN-SHLVIETS-QEVHDVPYGDYF----RVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDV 368 (573)
Q Consensus 295 ~~~~-~~yVVet~-t~t~DVPYGDsF----~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~ 368 (573)
...+ ..++|... +.-+.+|-.+-| .....|+|++.+...+++|++...+..+-.+ .+=++++..-+..+.-++
T Consensus 118 ~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG-~IP~~lvN~~~~~~~~~~ 196 (207)
T cd08911 118 IDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGV-NIPSYITSWVAMSGMPDF 196 (207)
T ss_pred EcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCC-ccCHHHHHHHHHhhccHH
Confidence 2222 33454443 333477766533 3568899997632134688888777765533 333555555555566666
Q ss_pred HHHHHHHHH
Q 008222 369 YAMWIGMAH 377 (573)
Q Consensus 369 ~~~~v~~l~ 377 (573)
++.+-+.++
T Consensus 197 l~~l~~a~~ 205 (207)
T cd08911 197 LERLRNAAL 205 (207)
T ss_pred HHHHHHHHh
Confidence 665555443
No 56
>PRK11519 tyrosine kinase; Provisional
Probab=47.04 E-value=28 Score=41.03 Aligned_cols=34 Identities=12% Similarity=0.381 Sum_probs=31.1
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHA 557 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~ 557 (573)
...+++||++|+.-|+.++..+|.+|+..|.++.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999999999774
No 57
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=46.60 E-value=3.2e+02 Score=27.43 Aligned_cols=121 Identities=4% Similarity=-0.061 Sum_probs=64.4
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR 294 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i~ 294 (573)
.-...+++.++.++..++..+ . .-|...+.. ...+..- +....-+-|....--|+ |+---|.......
T Consensus 54 ~r~~~~i~a~~~~vl~~lld~-~-~~Wd~~~~e--~~vIe~l-------d~~~~I~Yy~~~~PwP~-~~RD~V~~Rs~~~ 121 (204)
T cd08908 54 WRTTIEVPAAPEEILKRLLKE-Q-HLWDVDLLD--SKVIEIL-------DSQTEIYQYVQNSMAPH-PARDYVVLRTWRT 121 (204)
T ss_pred EEEEEEeCCCHHHHHHHHHhh-H-HHHHHHhhh--eEeeEec-------CCCceEEEEEccCCCCC-CCcEEEEEEEEEE
Confidence 345688999999999988766 2 233332221 1111111 11223333332221222 2211222211111
Q ss_pred eeeCCeEEEEEe-eecCCCCCCCeeE---EEEEEEEEecCCCCCCceEEEEEEEEEEcccc
Q 008222 295 VYRNSHLVIETS-QEVHDVPYGDYFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT 351 (573)
Q Consensus 295 ~~~~~~yVVet~-t~t~DVPYGDsF~---Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT 351 (573)
...++.|+|... ..-+.+|-. +.+ +.++|.|++. ++++|+|...+.++..+..
T Consensus 122 ~~~~g~~~I~~~Sv~h~~~P~~-~VR~~~~~~~w~i~P~---g~g~t~vtyi~~~DPgG~i 178 (204)
T cd08908 122 NLPKGACALLATSVDHDRAPVA-GVRVNVLLSRYLIEPC---GSGKSKLTYMCRIDLRGHM 178 (204)
T ss_pred eCCCCeEEEEEeecCcccCCcC-ceEEEEEeeEEEEEEC---CCCcEEEEEEEEeCCCCCC
Confidence 123334544444 666778844 444 4688999996 4679999999999997765
No 58
>PRK03100 sec-independent translocase; Provisional
Probab=44.95 E-value=40 Score=31.88 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=42.0
Q ss_pred CcchHHHHHHhhchhhHHHHHHHHHH-HHHHHHHHHHHHHhhHHHhhhc
Q 008222 525 AESIPWLERRMHYLKDEMLMVEARLE-RMWHEHAVLRAQLKDIEQLHKR 572 (573)
Q Consensus 525 ~~~~~w~~~r~~~~~~e~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
++++.||-+=+..+|+.+.-++.+++ .|.-|+.-||.+|+.|..||..
T Consensus 27 P~~~r~lG~~vr~~R~~~~~~~~~~~~elg~e~~dlrk~l~el~~lr~l 75 (136)
T PRK03100 27 PGAIRWTARALRQARDYASGATSQLREELGPEFDDLRKPLGELQKLRGM 75 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 57889999999999999999998886 5778999999999999888753
No 59
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=44.76 E-value=35 Score=29.26 Aligned_cols=42 Identities=31% Similarity=0.370 Sum_probs=25.1
Q ss_pred CCCCCcchHHHHHHhhchhh----------HHHHHHHHHHHHHHHHHHHHHHH
Q 008222 521 GQRSAESIPWLERRMHYLKD----------EMLMVEARLERMWHEHAVLRAQL 563 (573)
Q Consensus 521 ~~~~~~~~~w~~~r~~~~~~----------e~~~~e~~~~~~~~~~~~~~~~~ 563 (573)
.-|+.+.|+||+.= ..|++ ++.....+||.++.|.+-|+.+|
T Consensus 37 R~y~~~dv~~l~~i-~~L~~d~g~~l~~i~~~l~l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 37 RRYSERDIERLRRI-QRLTQELGVNLAGVKRILELEEELAELRAELDELRARL 88 (91)
T ss_pred eeECHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35899999999764 44444 23334445555555555555544
No 60
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=41.02 E-value=53 Score=29.85 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=33.3
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 565 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~ 565 (573)
..||+.-+++|+..|++.+...+..+.+++.++..+-..|..
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999988888888887777777777665543
No 61
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=40.57 E-value=65 Score=25.86 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=15.2
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008222 531 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQ 562 (573)
Q Consensus 531 ~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~ 562 (573)
||.+++.|..|-......++.|+.+..-|+.+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444444444444443
No 62
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=40.48 E-value=4.3e+02 Score=27.19 Aligned_cols=119 Identities=10% Similarity=-0.063 Sum_probs=61.3
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCc-ceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDK-EFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 293 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~t-di~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i 293 (573)
.-.+.++++|++++|++|...+. -.++-..+... .+.. .+ ....-+..+.|.--|+.|..- |.....-
T Consensus 79 fk~e~~vd~s~~~v~dlL~D~~~---R~~WD~~~~e~evI~~-----id--~d~~iyy~~~p~PwPvk~RDf-V~~~s~~ 147 (235)
T cd08873 79 FCVELKVQTCASDAFDLLSDPFK---RPEWDPHGRSCEEVKR-----VG--EDDGIYHTTMPSLTSEKPNDF-VLLVSRR 147 (235)
T ss_pred EEEEEEecCCHHHHHHHHhCcch---hhhhhhcccEEEEEEE-----eC--CCcEEEEEEcCCCCCCCCceE-EEEEEEE
Confidence 45677899999999998855442 11111111111 1111 01 112323333333224555532 2221221
Q ss_pred EeeeC-CeEEEEEeeec-CCCCCCC-ee---EEEEEEEEEecCCCCCCceEEEEEEEEEE
Q 008222 294 RVYRN-SHLVIETSQEV-HDVPYGD-YF---RVEGLWDVMRDDGGSKEGCILRVYVNVAF 347 (573)
Q Consensus 294 ~~~~~-~~yVVet~t~t-~DVPYGD-sF---~Ve~R~~It~~~~~s~~~CrL~V~~~V~F 347 (573)
...++ +.|+|...... +.+|=.. +. .+...|+|.+. ++++|+|...+.++-
T Consensus 148 ~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~---~~~~t~VtY~~~~dP 204 (235)
T cd08873 148 KPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQD---CGTCTEVSYYNETNP 204 (235)
T ss_pred eccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEEC---CCCcEEEEEEEEcCC
Confidence 11333 33776665555 4454433 33 35678999996 467899988887764
No 63
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=40.39 E-value=58 Score=28.79 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=40.4
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
-.|+++=|++|+..|..++.-.+.+++.+..++.-||.+|..+-
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999999998763
No 64
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=39.46 E-value=60 Score=31.51 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=24.4
Q ss_pred HHHHhhchhhHHHHHH--------HHHHHHHHHHHHHHHHHhh-HHHhh
Q 008222 531 LERRMHYLKDEMLMVE--------ARLERMWHEHAVLRAQLKD-IEQLH 570 (573)
Q Consensus 531 ~~~r~~~~~~e~~~~e--------~~~~~~~~~~~~~~~~~~~-~~~~~ 570 (573)
+...+..||-||...+ +..++|++|+..|+..|++ +++|+
T Consensus 56 ~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~ 104 (177)
T PF07798_consen 56 FKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLR 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777887776654 5566666666666666654 44443
No 65
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=38.89 E-value=47 Score=34.41 Aligned_cols=39 Identities=5% Similarity=0.081 Sum_probs=31.4
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008222 527 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 565 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~ 565 (573)
++.=|+.+|..|+.|+...-.++|+++||...|+.+-++
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344678888888999999999999999998888776554
No 66
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=38.70 E-value=78 Score=26.69 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=23.8
Q ss_pred chHHHHHHhhchhhH-------HHHHHHHHHHHHHHHHHHHHHHhh
Q 008222 527 SIPWLERRMHYLKDE-------MLMVEARLERMWHEHAVLRAQLKD 565 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e-------~~~~e~~~~~~~~~~~~~~~~~~~ 565 (573)
.|+=|+.++..||++ -...+...+++++|+...+.+|..
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665 555555666777777666666654
No 67
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=38.69 E-value=73 Score=28.05 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=31.0
Q ss_pred CCCCCCcchHHHHHHhhchhh------HHH----------HHHHHHHHHHHHHHHHHHHHhhHHHh
Q 008222 520 LGQRSAESIPWLERRMHYLKD------EML----------MVEARLERMWHEHAVLRAQLKDIEQL 569 (573)
Q Consensus 520 ~~~~~~~~~~w~~~r~~~~~~------e~~----------~~e~~~~~~~~~~~~~~~~~~~~~~~ 569 (573)
---|+.+.|+||. .|..|++ |+. +.+.|++.+.++.+-|......|+++
T Consensus 36 ~R~Y~~~~l~~l~-~I~~l~~~G~~l~ei~~~l~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 100 (102)
T cd04789 36 YRLYPDSDLQRLL-LIQQLQAGGLSLKECLACLQGKLTRSLLLERLSSLAEQIARKQQARDLLAAL 100 (102)
T ss_pred CeeCCHHHHHHHH-HHHHHHHCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999998 6777776 442 34455555555555555555555544
No 68
>PF04484 DUF566: Family of unknown function (DUF566) ; InterPro: IPR007573 This is a family of related proteins that is plant specific.
Probab=38.33 E-value=60 Score=34.67 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=36.3
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHH---HHHHHHhhHHHh
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHA---VLRAQLKDIEQL 569 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~---~~~~~~~~~~~~ 569 (573)
|-++-.||.-|+|-+.|--..||++|||+. .|+.|+..||.-
T Consensus 182 L~~~w~~is~Lr~sV~~KRi~lq~~kq~~KL~~IL~~Q~~~Le~W 226 (311)
T PF04484_consen 182 LYNAWLRISELRDSVAMKRIELQRLKQELKLNSILKSQMPYLEEW 226 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345667999999999999999999999975 589999999864
No 69
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=37.61 E-value=2.8e+02 Score=28.05 Aligned_cols=51 Identities=6% Similarity=0.027 Sum_probs=39.7
Q ss_pred CCeEEEEEeeecCCCCCCC---eeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccc
Q 008222 298 NSHLVIETSQEVHDVPYGD---YFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT 351 (573)
Q Consensus 298 ~~~yVVet~t~t~DVPYGD---sF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT 351 (573)
+.++++..++.-+++|.-. .-...++|.|++. ++++|+|.-.+++.+.+.+
T Consensus 126 g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~---g~g~s~ltyi~rvD~rG~~ 179 (205)
T cd08907 126 GGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPC---GMGRSRLTHICRADLRGRS 179 (205)
T ss_pred CCEEEEEecccCCcCCCCCCeEEEEEeccEEEEEC---CCCCeEEEEEEEeCCCCCC
Confidence 3456677777777777654 4556889999997 4679999999999998876
No 70
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=37.48 E-value=75 Score=24.76 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 539 KDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 539 ~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
|.++...|.+++.|..|...|+.++..|++
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567777888888999999999888888764
No 71
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=37.46 E-value=68 Score=31.00 Aligned_cols=33 Identities=18% Similarity=0.437 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc
Q 008222 540 DEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 572 (573)
Q Consensus 540 ~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
+++..-+..++++++++.+|..++++++.++.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 190 (191)
T PF04156_consen 158 EEVQELRSQLERLQENLQQLEEKIQELQELLEQ 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555555566666666655543
No 72
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=37.39 E-value=4.1e+02 Score=26.68 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=36.3
Q ss_pred CCeEEEEEeeecCCCCCCCeeEE---EEEEEEEecCCCCCCceEEEEEEEEEEcccc
Q 008222 298 NSHLVIETSQEVHDVPYGDYFRV---EGLWDVMRDDGGSKEGCILRVYVNVAFSKKT 351 (573)
Q Consensus 298 ~~~yVVet~t~t~DVPYGDsF~V---e~R~~It~~~~~s~~~CrL~V~~~V~F~KsT 351 (573)
+.+.++..+..-++.|--++.+. .++|.|++. ++++|+|.--+.+++.+..
T Consensus 126 G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~---~~g~trvt~i~~vDpkG~~ 179 (205)
T cd08909 126 GACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPC---GSGKSRLTHICRVDLKGHS 179 (205)
T ss_pred CcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEEC---CCCCEEEEEEEEecCCCCC
Confidence 33334555666666776555543 578999997 3468999999999998765
No 73
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=37.15 E-value=58 Score=27.72 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 539 KDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 539 ~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
|||.....+.|.+.|.....|-++|..||.
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999984
No 74
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=36.86 E-value=49 Score=35.39 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=30.0
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERMWHEH 556 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~ 556 (573)
..++++||++++..+++++..||.+|+..|.++
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 367999999999999999999999999988865
No 75
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=36.81 E-value=38 Score=33.91 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=14.6
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHH
Q 008222 527 SIPWLERRMHYLKDEMLMVEARLERMW 553 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~e~~~~~~~ 553 (573)
+|-=.|+.+..||++....|++|+.|-
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li 67 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELI 67 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555543
No 76
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=36.70 E-value=63 Score=29.24 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=28.4
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQL 563 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~ 563 (573)
-.||++-|++|+..|.+.+...+..++.++.+...+..+|
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999988887776666666666666666655554
No 77
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=35.72 E-value=72 Score=33.49 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=26.5
Q ss_pred chHHHHHHhhchhhH------HHHHHHHHHHHHHHHHHHHHHHhh
Q 008222 527 SIPWLERRMHYLKDE------MLMVEARLERMWHEHAVLRAQLKD 565 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e------~~~~e~~~~~~~~~~~~~~~~~~~ 565 (573)
-+.||..|+-.+.+- ..|+|...+.+++.....++.|+.
T Consensus 167 kV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~ 211 (269)
T PF05278_consen 167 KVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEE 211 (269)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999998887765 456666666666666665555543
No 78
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=35.47 E-value=76 Score=31.21 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=33.3
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
++=|+.|+..|.+|+.--+.-+|.++.||..|..|+.-+|.
T Consensus 125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~ 165 (194)
T PF08614_consen 125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEE 165 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888888888889999999999999887763
No 79
>PHA03231 glycoprotein BALF4; Provisional
Probab=35.06 E-value=25 Score=42.20 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=21.2
Q ss_pred cccccccccccccccchHHHHHHHHHHHhhhhcccccc
Q 008222 435 DASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQ 472 (573)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (573)
++-|-+|..| ||.+ .+.+.++.-.+.-|.+||++-
T Consensus 669 ~gLG~vGk~v-g~vv--~~v~ga~~SiVsG~~sFl~NP 703 (829)
T PHA03231 669 QGLGAVGKAV-GNVV--SGVAGAVGSIVSGVISFLKNP 703 (829)
T ss_pred hhhhhhchhh-hhhh--hhHHHHHHHHHHHHHHHhcCc
Confidence 3444455544 5532 234445777788899999983
No 80
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=34.96 E-value=33 Score=31.24 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=40.0
Q ss_pred EEEeccceeEEEEeccccccCceEEEEeCCcEEEEEeecChHHHHHHHHH
Q 008222 52 KIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITD 101 (573)
Q Consensus 52 ~~Ip~~dI~~I~K~~ta~i~pNaI~I~t~~~k~~F~SF~sRD~af~li~~ 101 (573)
-.+|+++|.+|-+..- .+=++|++|.-.+..-+|-.|-.++.+...+..
T Consensus 56 ~~w~ls~Ir~v~~RRy-lLr~~alEiF~~d~~~~f~~F~~~~~~k~vv~~ 104 (108)
T cd01201 56 GKWPFSEIRAIFSRRY-LLQNTALELFLASRTSIFFAFPDQNAVKKVVYA 104 (108)
T ss_pred ceeeHHHHHHHHHHhh-hcccceEEEEEeCCceEEEEeCcHHHHHHHHhh
Confidence 4689999999999984 556899999987767777789998888877654
No 81
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=34.83 E-value=41 Score=29.69 Aligned_cols=43 Identities=30% Similarity=0.322 Sum_probs=28.3
Q ss_pred CcchHHHHHHhhchhhHHH---HHHHHHHHHHH---HHHHHHHHHhhHH
Q 008222 525 AESIPWLERRMHYLKDEML---MVEARLERMWH---EHAVLRAQLKDIE 567 (573)
Q Consensus 525 ~~~~~w~~~r~~~~~~e~~---~~e~~~~~~~~---~~~~~~~~~~~~~ 567 (573)
.|||.|-++|+..-|||-. |--+|=|.|-| .+.||+.|..+++
T Consensus 30 iEA~~wY~qR~~~tKD~~~r~ImehnrdeE~eHa~mlLEwlrR~~p~wd 78 (103)
T COG3461 30 IEAMMWYDQRADATKDEDLRAIMEHNRDEEKEHAAMLLEWLRRHDPAWD 78 (103)
T ss_pred HHHHHHHHHHhhccccHhHHHHHHHcccHHHHHHHHHHHHHHHcCchHH
Confidence 4899999999999999853 22233333333 2457777766654
No 82
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.50 E-value=81 Score=25.74 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=27.0
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008222 532 ERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 566 (573)
Q Consensus 532 ~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~ 566 (573)
-.++..++.|+...+.+++.++.|..-|+.+++.|
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777888888888888888888888877776
No 83
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=34.45 E-value=36 Score=37.18 Aligned_cols=35 Identities=11% Similarity=0.422 Sum_probs=31.3
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAV 558 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~ 558 (573)
...+++||++|+..+++++.-+|.+|+..|.++..
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44579999999999999999999999999998744
No 84
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.17 E-value=76 Score=28.49 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=32.0
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 533 RRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 533 ~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
.+.+.++.|..-+++++++++++-+.|+.++++|.
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999998875
No 85
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=33.59 E-value=3.5e+02 Score=24.14 Aligned_cols=47 Identities=11% Similarity=0.095 Sum_probs=30.6
Q ss_pred EEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 008222 321 EGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQ 382 (573)
Q Consensus 321 e~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v~~l~e~lk~ 382 (573)
...|.|... .++|+|.+. +.. +.....+++.+-+...++.++.+|++
T Consensus 87 ~v~~~l~~~----~~gT~l~l~----~~~-------~~~~~~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 87 EVEVEFTEE----GDGTKVVET----FDA-------ENENPVEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred EEEEEEEEC----CCCEEEEEE----ECC-------CCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 568888874 358999985 321 12234556777777777788777753
No 86
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=33.28 E-value=1.3e+02 Score=26.77 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=25.0
Q ss_pred CeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccc
Q 008222 316 DYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT 351 (573)
Q Consensus 316 DsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT 351 (573)
+-...+.+|.+++.+ +++|+|.....+.+.+..
T Consensus 82 ~~~~~~g~w~~~~~~---~~~t~Vt~~~~~~~~~~~ 114 (142)
T cd08861 82 PVASMSGEWRFEPLG---GGGTRVTLRHDFTLGIDS 114 (142)
T ss_pred ChhhheeEEEEEECC---CCcEEEEEEEEEEECCCC
Confidence 344678899999863 358999999998887543
No 87
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=32.26 E-value=56 Score=28.00 Aligned_cols=29 Identities=24% Similarity=0.325 Sum_probs=23.2
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 008222 531 LERRMHYLKDEMLMVEARLERMWHEHAVL 559 (573)
Q Consensus 531 ~~~r~~~~~~e~~~~e~~~~~~~~~~~~~ 559 (573)
|.+--..||+|.++.||.|+.++.|+--.
T Consensus 5 i~eEn~~Lk~eiqkle~ELq~~~~~~qIk 33 (76)
T PF07334_consen 5 IQEENARLKEEIQKLEAELQQNKREFQIK 33 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 44555679999999999999999987543
No 88
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=31.51 E-value=3.5e+02 Score=23.53 Aligned_cols=58 Identities=7% Similarity=-0.027 Sum_probs=32.7
Q ss_pred eeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 008222 317 YFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLK 381 (573)
Q Consensus 317 sF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v~~l~e~lk 381 (573)
.+....+|.|+.. +.++|+|.+.. +|.+. +..++.......++..+...++.+++.++
T Consensus 80 ~~~~~~~~~~~~~---~~~~t~l~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 137 (138)
T cd08862 80 GISAVHRHEFEAK---PDGGVRVTTSE--SLSGP--LAFLFGLFVGKKLRALLPEWLEGLKAAAE 137 (138)
T ss_pred CEEEEEEEEEEEc---CCCcEEEEEEE--Eeecc--hHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 3666788888875 23588887654 55542 22223333444455556666666655443
No 89
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=31.35 E-value=42 Score=39.65 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=31.0
Q ss_pred CCCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 008222 523 RSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAV 558 (573)
Q Consensus 523 ~~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~ 558 (573)
-+..+.+||++|+..|++++..+|++|+..|.++..
T Consensus 191 ~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l 226 (754)
T TIGR01005 191 SNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDL 226 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 355689999999999999999999999998876543
No 90
>PRK14011 prefoldin subunit alpha; Provisional
Probab=31.12 E-value=87 Score=29.83 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=36.9
Q ss_pred CCCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008222 523 RSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQL 563 (573)
Q Consensus 523 ~~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~ 563 (573)
-..||+..+++|+..|..-+.....+|++++.++..|...|
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L 125 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKEL 125 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999988544
No 91
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=30.33 E-value=4.1e+02 Score=24.01 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=20.4
Q ss_pred eEEEEEEEEEecCCCCCCceEEEEEEEEEEcc
Q 008222 318 FRVEGLWDVMRDDGGSKEGCILRVYVNVAFSK 349 (573)
Q Consensus 318 F~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~K 349 (573)
|.-+.+|.|+.. .++|+|.....+...+
T Consensus 86 ~~~~~~~~~~~~----~~gt~vt~~~~~~~~~ 113 (146)
T cd07824 86 LEGVGRWTLAPD----GSGTVVRYDWEVRTTK 113 (146)
T ss_pred eeEEEEEEEEEc----CCCEEEEEEEEEEcCH
Confidence 444788999875 3479988888888743
No 92
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=30.01 E-value=4.5e+02 Score=24.32 Aligned_cols=113 Identities=12% Similarity=0.139 Sum_probs=55.1
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR 294 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i~ 294 (573)
+..+.++++|++++|.++-.... .+...++..-....+.-+. ...|..|.++|. -|.+.. ..++++.
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~-~~~~~~~p~v~~~~~~eG~----~~~GsvR~~~~~------~~~~~~--~~kE~l~ 69 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSH-LLPPKLPPVIKSVELLEGD----GGPGSIKLITFG------PGGKVK--YVKERID 69 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChh-hccccccccccEEEEEecC----CCCceEEEEEEc------CCCcce--EEEEEEE
Confidence 45678899999999996644331 1222232211111222222 223678887762 122211 2456776
Q ss_pred eeeCCeEEEEEeeecCCCCC--CCeeEEEEEEEEEecCCCCCCceEEEEEEEE
Q 008222 295 VYRNSHLVIETSQEVHDVPY--GDYFRVEGLWDVMRDDGGSKEGCILRVYVNV 345 (573)
Q Consensus 295 ~~~~~~yVVet~t~t~DVPY--GDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V 345 (573)
..++....+.-+..-.++|- -.+|.. .+.+.+. +.++|.+...+.-
T Consensus 70 ~~D~~~~~~~y~vveg~~~~~~~~~y~~--t~~v~~~---~~~~t~v~Wt~~y 117 (148)
T cd07816 70 AVDEENKTYKYTVIEGDVLKDGYKSYKV--EIKFVPK---GDGGCVVKWTIEY 117 (148)
T ss_pred EEcccccEEEEEEEecccccCceEEEEE--EEEEEEC---CCCCEEEEEEEEE
Confidence 66664444444444344431 233333 3444443 2457876644443
No 93
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=29.98 E-value=1.3e+02 Score=28.04 Aligned_cols=45 Identities=13% Similarity=0.252 Sum_probs=41.1
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 572 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
+..|...|...+..+..++.++|.-|.+..--....+-||+|+.+
T Consensus 73 l~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~k~~ekLker 117 (146)
T PRK07720 73 VTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIEVKKYEKMKEK 117 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999988888899999999864
No 94
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.92 E-value=4.1e+02 Score=23.79 Aligned_cols=59 Identities=5% Similarity=-0.143 Sum_probs=38.6
Q ss_pred eEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 008222 318 FRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLK 381 (573)
Q Consensus 318 F~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v~~l~e~lk 381 (573)
+.....|.++.. .++|+|.+.......... .-..+.......+++.+...++.+++.++
T Consensus 91 ~~~~~~~~~~~~----~~gT~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 149 (150)
T cd07818 91 ATNDVEFTLEPV----GGGTKVTWGMSGELPFPL-KLMYLFLDMDKMIGKDFEKGLANLKAVLE 149 (150)
T ss_pred ccceEEEEEEEc----CCceEEEEEEEecCCchH-HHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 367889999986 347999988877665432 22355555556666666666666666543
No 95
>PF03317 ELF: ELF protein; InterPro: IPR004990 This is a family of hypothetical proteins from cereal crops.
Probab=29.91 E-value=68 Score=32.33 Aligned_cols=44 Identities=27% Similarity=0.253 Sum_probs=35.3
Q ss_pred CcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 525 AESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 525 ~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
+.+-.|+|---+-+-||+.-+.|+|||--|||+.+-=+++|+.|
T Consensus 238 ss~Rr~~Eveqrirw~~I~rs~a~ler~e~~h~l~lf~~ed~rr 281 (284)
T PF03317_consen 238 SSARRCLEVEQRIRWEEIPRSKASLERAEHEHALDLFKSEDLRR 281 (284)
T ss_pred hhhhHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHhhhhhhc
Confidence 34556876555556799999999999999999999888888643
No 96
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.61 E-value=69 Score=29.45 Aligned_cols=52 Identities=25% Similarity=0.149 Sum_probs=35.0
Q ss_pred EEEeccceeEEEEecccc-ccCceEEEEeC-CcEEEEEeecChHHHHHHHHHHHhhcCC
Q 008222 52 KIIPFYEVTAVRRAKTAG-IFPNAIEIFAA-GKKYFFASFLSRDEAFKLITDGWLQHGS 108 (573)
Q Consensus 52 ~~Ip~~dI~~I~K~~ta~-i~pNaI~I~t~-~~k~~F~SF~sRD~af~li~~~w~~~~~ 108 (573)
+.|||..|.+|--..+.. +.| --.|.|+ +.+|.|+|==+ =.+|..+...+++
T Consensus 46 iqipWs~i~~v~vsvs~KK~~~-~f~i~td~~gk~~FaSkds----g~iLk~ir~yvg~ 99 (122)
T COG4687 46 IQIPWSEINEVDVSVSLKKWGR-QFSIFTDTQGKVRFASKDS----GKILKKIREYVGN 99 (122)
T ss_pred eEecHHHhheeheeehhhhhcc-eEEEEEcCCceEEEEeCCc----hhHHHHHHHHhCc
Confidence 999999998776544433 444 5678887 78999998433 2455555555543
No 97
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=29.51 E-value=1.6e+02 Score=25.56 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=29.5
Q ss_pred EEEeccceeEEEEeccccc--cCceEEEEeCCcEEEEEeecChHHHHHHHHHH
Q 008222 52 KIIPFYEVTAVRRAKTAGI--FPNAIEIFAAGKKYFFASFLSRDEAFKLITDG 102 (573)
Q Consensus 52 ~~Ip~~dI~~I~K~~ta~i--~pNaI~I~t~~~k~~F~SF~sRD~af~li~~~ 102 (573)
-.|++.++.-..-...... -||.+.|.|.++.|+|+ --+.++..+=|..+
T Consensus 43 ~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~rt~~~~-A~s~~e~~~Wi~ai 94 (100)
T cd01233 43 GVINLSTARVEHSEDQAAMVKGPNTFAVCTKHRGYLFQ-ALSDKEMIDWLYAL 94 (100)
T ss_pred eEEEecccEEEEccchhhhcCCCcEEEEECCCCEEEEE-cCCHHHHHHHHHHh
Confidence 6788886632211111111 48999999998888775 34555555544443
No 98
>PRK09039 hypothetical protein; Validated
Probab=29.29 E-value=81 Score=34.01 Aligned_cols=41 Identities=24% Similarity=0.187 Sum_probs=32.2
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
++=|++++..+|.+..-+-.+++++++|.+.||+||..||.
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~ 158 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA 158 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777777777777778889999999999999888764
No 99
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.08 E-value=1e+02 Score=31.86 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=35.8
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHH-HhhHHHhh
Q 008222 531 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQ-LKDIEQLH 570 (573)
Q Consensus 531 ~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~ 570 (573)
..+|...|-+|+......+..+|.|.+-||+- +|..|+.|
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999987 88888887
No 100
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.96 E-value=81 Score=35.63 Aligned_cols=38 Identities=18% Similarity=0.421 Sum_probs=27.9
Q ss_pred chHHHHHHhhchhhHHHHH-------HHHHHHHHHHHHHHHHHHh
Q 008222 527 SIPWLERRMHYLKDEMLMV-------EARLERMWHEHAVLRAQLK 564 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~-------e~~~~~~~~~~~~~~~~~~ 564 (573)
..+=|||++..||-||.|. |++|+.|..|+..||+|++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999888743 5566666777777877774
No 101
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.74 E-value=82 Score=31.28 Aligned_cols=23 Identities=43% Similarity=0.533 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Q 008222 545 VEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 545 ~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
.|||++.+++|.|.||+.|.+|.
T Consensus 190 learv~aLe~eva~L~~rld~ll 212 (215)
T COG3132 190 LEARVEALEQEVAELRARLDSLL 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999888764
No 102
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=28.67 E-value=2e+02 Score=22.67 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=32.4
Q ss_pred eEEEeccceeEEEEecccc--ccCceEEEEeCCc-EEEEEeecChHHHHHHHHH
Q 008222 51 QKIIPFYEVTAVRRAKTAG--IFPNAIEIFAAGK-KYFFASFLSRDEAFKLITD 101 (573)
Q Consensus 51 ~~~Ip~~dI~~I~K~~ta~--i~pNaI~I~t~~~-k~~F~SF~sRD~af~li~~ 101 (573)
...||+.++ .+....... -.++++.|.+.+. .|.|..- +.++.-+=+..
T Consensus 45 ~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~-s~~~~~~W~~~ 96 (102)
T smart00233 45 KGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRSYLLQAE-SEEEREEWVDA 96 (102)
T ss_pred ceEEECCcC-EEEeCCCCccCCCceEEEEEecCCceEEEEcC-CHHHHHHHHHH
Confidence 388999998 666655431 3588999998777 7777653 44444444433
No 103
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=28.35 E-value=19 Score=32.67 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=0.4
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 008222 531 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH 570 (573)
Q Consensus 531 ~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 570 (573)
|+...--+-.+..-.|+.+++|+.|.+-||..+..||...
T Consensus 4 Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 4 LDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp ---------------------------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445566777889999999999999999999998654
No 104
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.26 E-value=1.2e+02 Score=24.52 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=19.5
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 534 RMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 534 r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
|+..|-.|+-..+.-+.-+|.|..-||..++.+++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555566666666666666655553
No 105
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=28.00 E-value=95 Score=27.81 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=38.2
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHH--HHHHHHHHHHHhhHH
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERM--WHEHAVLRAQLKDIE 567 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~--~~~~~~~~~~~~~~~ 567 (573)
+++.++=|+.|+..+..=+..+|.+++-| ++|+.-|+..|..++
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~ 78 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELR 78 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 35777779899999999999999999999 999999998888775
No 106
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.79 E-value=81 Score=38.24 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=34.8
Q ss_pred CCcchHHHHHHhhchhh-----HH-----HHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 524 SAESIPWLERRMHYLKD-----EM-----LMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~-----e~-----~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
-+||++|=++-...|-| || .|||.|+|.|+.|..-||..++.||
T Consensus 292 ~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~dele 345 (1243)
T KOG0971|consen 292 AKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELE 345 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889998887666655 44 4899999999999999998887554
No 107
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=27.54 E-value=1.1e+02 Score=27.28 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=37.5
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 566 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~ 566 (573)
-.|+++=|++|+..+.++....|.+++.++..+.-+.++|..+
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999888887654
No 108
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=27.37 E-value=7e+02 Score=25.65 Aligned_cols=116 Identities=9% Similarity=-0.057 Sum_probs=58.0
Q ss_pred EEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEE-eeecccCCCceeeeeEEEEE-
Q 008222 216 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQ-HPIKVYFGAKFGSCKETQKF- 293 (573)
Q Consensus 216 l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt-~PL~~p~GPKst~c~etQ~i- 293 (573)
-.+..+++|++.+|++|..-+ ...++...+...++. ...+. ..+.+.++ .|...|+-|.. .+.....
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~---~r~~Wd~~~~e~~vI----e~id~--~~~vY~v~~~p~~~pvs~RD--fV~~~s~~ 152 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLR---RRPEWDKHYRSCELV----QQVDE--DDAIYHVTSPSLSGHGKPQD--FVILASRR 152 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChh---hhhhhHhhccEEEEE----EecCC--CcEEEEEecCCCCCCCCCCe--EEEEEEEE
Confidence 456789999999999884433 222222222221111 11111 12322222 23333344443 2222222
Q ss_pred EeeeC-CeEE-EEEeeecCCCCCCC----eeEEEEEEEEEecCCCCCCceEEEEEEEE
Q 008222 294 RVYRN-SHLV-IETSQEVHDVPYGD----YFRVEGLWDVMRDDGGSKEGCILRVYVNV 345 (573)
Q Consensus 294 ~~~~~-~~yV-Vet~t~t~DVPYGD----sF~Ve~R~~It~~~~~s~~~CrL~V~~~V 345 (573)
...++ ..|+ .-..+..|++|=-. -+...+.|+|.+. ++++|+|.....+
T Consensus 153 ~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~---~~~~t~vtY~~~~ 207 (240)
T cd08913 153 KPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEE---SDQLTKVSYYNQA 207 (240)
T ss_pred eccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEEC---CCCcEEEEEEEEe
Confidence 22233 3454 45556667777433 3457789999986 4678998544433
No 109
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=26.69 E-value=1.1e+02 Score=28.79 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=30.9
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHH--------HHHHHHHHHHHhhHHHh
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERM--------WHEHAVLRAQLKDIEQL 569 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~--------~~~~~~~~~~~~~~~~~ 569 (573)
|-+++.|.=++|..|+.|+.-.|+.|+.. ..+.+-|++.++.||.+
T Consensus 1 ~~~~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~ 54 (149)
T PF07352_consen 1 DREEADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGL 54 (149)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999888877533 23344455555555543
No 110
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=26.52 E-value=1.2e+02 Score=32.35 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=21.8
Q ss_pred CcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 008222 525 AESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQL 569 (573)
Q Consensus 525 ~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 569 (573)
-|.++||+|-+.-..-|...----...+|+|++.||.+|+..+.|
T Consensus 125 eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdel 169 (302)
T PF09738_consen 125 EETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDEL 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677776653322222222222334555555556665555443
No 111
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=26.46 E-value=2.6e+02 Score=24.86 Aligned_cols=52 Identities=12% Similarity=0.205 Sum_probs=32.0
Q ss_pred EEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHHH
Q 008222 319 RVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIG 374 (573)
Q Consensus 319 ~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v~ 374 (573)
..+..|.+++. ++++|++.....+++.+ .+...++..-..+..+.....|.+
T Consensus 82 ~~~g~w~~~p~---~~~~T~v~~~~~~~~~~-~l~~~l~~~~~~~~~~~~l~~f~~ 133 (138)
T cd07813 82 HLEGEWRFKPL---GENACKVEFDLEFEFKS-RLLEALAGLVFDEVAKKMVDAFEK 133 (138)
T ss_pred hceeEEEEEEC---CCCCEEEEEEEEEEECC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999997 35689999998888864 343444333333333333444333
No 112
>PRK04406 hypothetical protein; Provisional
Probab=26.18 E-value=1.9e+02 Score=24.45 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=28.5
Q ss_pred HHHHhhchhhHHHHHHHHHHH-------HHHHHHHHHHHHhhH-HHhhh
Q 008222 531 LERRMHYLKDEMLMVEARLER-------MWHEHAVLRAQLKDI-EQLHK 571 (573)
Q Consensus 531 ~~~r~~~~~~e~~~~e~~~~~-------~~~~~~~~~~~~~~~-~~~~~ 571 (573)
++.|+..|-.-+.--|..+|. .+++...|+.+|+.| +||+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777776666666666665 477788888888877 56654
No 113
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=25.90 E-value=2.2e+02 Score=25.10 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=25.5
Q ss_pred EEEeccceeEEEEeccccccCceEEEEeCCcEEEEE
Q 008222 52 KIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFA 87 (573)
Q Consensus 52 ~~Ip~~dI~~I~K~~ta~i~pNaI~I~t~~~k~~F~ 87 (573)
-.||+.++. |++.....=.||+.+|.+.++.|.+.
T Consensus 45 ~~i~L~~~~-V~~~~~~~~~~~~F~I~~~~ks~~l~ 79 (99)
T cd01220 45 GHLPLRGML-TEESEHEWGVPHCFTIFGGQCAITVA 79 (99)
T ss_pred EEEEcCceE-EeeccCCcCCceeEEEEcCCeEEEEE
Confidence 779999885 66654422368999999887776664
No 114
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=25.90 E-value=93 Score=31.81 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 008222 540 DEMLMVEARLERMWHEHAVLRAQLKDIEQL 569 (573)
Q Consensus 540 ~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 569 (573)
+||..+|.+|-+.|.|...|+.|++.|++-
T Consensus 162 ~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999998864
No 115
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=25.80 E-value=1.3e+02 Score=26.28 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=30.2
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 535 MHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 535 ~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
+..|+.|+..+|..++.-.|+.-.|+.+++.|+
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999997
No 116
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=25.47 E-value=2.5e+02 Score=23.28 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=32.4
Q ss_pred EEEeccceeEEEEecccc----ccCceEEEEeCCcEEEEEeecChHHHHHHH
Q 008222 52 KIIPFYEVTAVRRAKTAG----IFPNAIEIFAAGKKYFFASFLSRDEAFKLI 99 (573)
Q Consensus 52 ~~Ip~~dI~~I~K~~ta~----i~pNaI~I~t~~~k~~F~SF~sRD~af~li 99 (573)
..||+.+|..|++.++.. .-...|+|..++.+....|=-.+|+=-+.|
T Consensus 19 ~~I~i~~I~~I~~~~~~~~~~a~S~~rl~I~y~~~~~i~IsP~~~~~FI~~L 70 (74)
T PF06713_consen 19 KKIPIEDIRSIRPTKNPLSSPALSLDRLEIYYGKYKSILISPKDKEEFIAEL 70 (74)
T ss_pred cEEEhHHccEEEecCCccccccccccEEEEEECCCCEEEEECCCHHHHHHHH
Confidence 349999999999996332 223679999886666666655555433333
No 117
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=25.47 E-value=1.5e+02 Score=26.79 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=29.7
Q ss_pred CCCCcchHHHHHHhhchhh--------------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 008222 522 QRSAESIPWLERRMHYLKD--------------------EMLMVEARLERMWHEHAVLRAQLKDIEQL 569 (573)
Q Consensus 522 ~~~~~~~~w~~~r~~~~~~--------------------e~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 569 (573)
-|+.+.+.||+ .|..||+ ...+++++++.+.++...|....+.|+.+
T Consensus 37 ~Y~~~~l~~l~-~I~~lr~~G~~L~eI~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~L~~~ 103 (120)
T cd04781 37 QYDPQVLDRLA-LIALGRAAGFSLDEIQAMLSHDGKPPIDRQLLKAKAAELDQQIQRLQAMRELLRHV 103 (120)
T ss_pred ecCHHHHHHHH-HHHHHHHcCCCHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999997 5555543 12455556666666666666655555544
No 118
>PRK02542 photosystem I assembly protein Ycf4; Provisional
Probab=24.82 E-value=99 Score=30.81 Aligned_cols=55 Identities=22% Similarity=0.287 Sum_probs=39.3
Q ss_pred cccCceeeeecceeeeeccccCccccccccccccccceeEEEeccceeEEEEeccccccCce-EEEEeCC
Q 008222 13 NIFGFETKVTSKFQCYVASCNSTLQYQSCFAISNEFMLQKIIPFYEVTAVRRAKTAGIFPNA-IEIFAAG 81 (573)
Q Consensus 13 ~~~~~~~k~~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~dI~~I~K~~ta~i~pNa-I~I~t~~ 81 (573)
|.|+.+++++.-|--++--+|.+. .+.+|++||.+|+-+-.-+++|.- |-+++.+
T Consensus 97 NeFdK~~g~v~ifRwGFPGKNRrI--------------~l~~pl~dIqsIrveikeGlnprr~iyL~~kg 152 (188)
T PRK02542 97 NEFDKETGKVTIFRWGFPGKNRRI--------------EVEYPLEDIQAVKVEIREGLNPRRRLYLRLKG 152 (188)
T ss_pred chhhcCCCEEEEEecCCCCCceEE--------------EEEeEhHHeEEEEEEEecCcCCccEEEEEEcC
Confidence 678777776666666665555554 289999999999988777888754 4445543
No 119
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=24.46 E-value=91 Score=30.62 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=14.9
Q ss_pred CCCCCCCcchHHHHHHhhchh
Q 008222 519 GLGQRSAESIPWLERRMHYLK 539 (573)
Q Consensus 519 ~~~~~~~~~~~w~~~r~~~~~ 539 (573)
|-.-|+.+.|+||+.-.++..
T Consensus 34 G~R~y~~~dl~~L~~I~~l~~ 54 (175)
T PRK13182 34 GHYIFTEEDLQLLEYVKSQIE 54 (175)
T ss_pred CCEEECHHHHHHHHHHHHHHH
Confidence 445689999999986554443
No 120
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=24.34 E-value=1e+02 Score=24.48 Aligned_cols=24 Identities=29% Similarity=0.453 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Q 008222 543 LMVEARLERMWHEHAVLRAQLKDI 566 (573)
Q Consensus 543 ~~~e~~~~~~~~~~~~~~~~~~~~ 566 (573)
.-|.++|..++.|-..||++|+.+
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999998765
No 121
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.27 E-value=2.4e+02 Score=31.99 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=35.2
Q ss_pred CCCCCCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008222 520 LGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 565 (573)
Q Consensus 520 ~~~~~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~ 565 (573)
.++-..|-|+=|--++..|+.||+-++++=++++.|-..||....+
T Consensus 53 egDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~ 98 (472)
T TIGR03752 53 EGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQS 98 (472)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456778899999999999999998888777777777777664433
No 122
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=24.12 E-value=1.7e+02 Score=27.62 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=37.3
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQL 569 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 569 (573)
+.|+..|.+.|+.+..-+...+..++.+..-++.||..|..+
T Consensus 14 ~~~~~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~ 55 (135)
T TIGR03495 14 LGWQSQRLRNARADLERANRVLKAQQAELASKANQLIVLLAL 55 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 569999999999999999999999999999999999887654
No 123
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=24.05 E-value=86 Score=34.95 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=29.9
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHA 557 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~ 557 (573)
...+.+||++++..+++++.-+|..|+..|.++.
T Consensus 159 ~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~ 192 (498)
T TIGR03007 159 SDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENG 192 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3458999999999999999999999999887653
No 124
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=23.62 E-value=6.4e+02 Score=23.92 Aligned_cols=75 Identities=7% Similarity=0.073 Sum_probs=56.2
Q ss_pred ecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcc-cccchhhhhhchHHHHHHHHHHHHHHHHHHHhhc
Q 008222 308 EVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSK-KTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQK 383 (573)
Q Consensus 308 ~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~K-sT~~Ks~IEkst~~g~ke~~~~~v~~l~e~lk~~ 383 (573)
.+..+=+.+.+.|+.+....+.+.+ ++.|.+.-.+.|.-.+ ...+.+.||+-..+..+.....=.+.+...|++.
T Consensus 79 ~t~Nls~~~~~~v~E~~~Y~~~p~n-p~~T~~~q~a~i~~~~~~~~~~~~iE~~~~~~f~~na~kgr~~~e~vi~~l 154 (157)
T PF04707_consen 79 KTRNLSFSSFLSVEETCVYKPHPDN-PNWTLFKQEATISIKGSFSGFSSRIEKFSVSRFKSNAKKGREGMEWVIKKL 154 (157)
T ss_pred EEEEcccCceeEEEEEEEEEECCCC-CCcceEEEEEEEEEeCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678999999999999998653 4799999999998654 2467899999888877777666555555555543
No 125
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=23.56 E-value=1.6e+02 Score=31.38 Aligned_cols=43 Identities=30% Similarity=0.396 Sum_probs=36.3
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH 570 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 570 (573)
-.|-+=|+.++..=..-.+.+++.|+.|.+.|.++++.|..+.
T Consensus 137 ~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~ 179 (325)
T PF08317_consen 137 KMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELL 179 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999887777888999999999999999888876553
No 126
>PF14182 YgaB: YgaB-like protein
Probab=23.53 E-value=1.1e+02 Score=26.43 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHh
Q 008222 546 EARLERMWHEHAVLRAQLKDIEQL 569 (573)
Q Consensus 546 e~~~~~~~~~~~~~~~~~~~~~~~ 569 (573)
||.|..+|.|.+..|.+|+.+.++
T Consensus 39 ea~l~~i~~EI~~mkk~Lk~Iq~~ 62 (79)
T PF14182_consen 39 EAELHSIQEEISQMKKELKEIQRV 62 (79)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999988764
No 127
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.13 E-value=1.5e+02 Score=30.24 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=19.0
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008222 531 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 565 (573)
Q Consensus 531 ~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~ 565 (573)
++.|+..|++++.....+++..|.+.+-+|..|+.
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555544
No 128
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=23.05 E-value=2e+02 Score=26.64 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=39.8
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 572 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
|.=|...|.+.+.++..+++++++.|.+...-+...+-||.|+.+
T Consensus 73 i~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek 117 (147)
T PRK05689 73 LQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALETLQER 117 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788999999999999999999999988888889999999754
No 129
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=22.88 E-value=1.1e+02 Score=34.48 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=19.9
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHH
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERM 552 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~ 552 (573)
++=+++|++.|+++|...+..++.+
T Consensus 165 ~~L~~~Rl~~L~~qi~~~~~~l~~~ 189 (475)
T PF10359_consen 165 IELIQERLDELEEQIEKHEEKLGEL 189 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4568888888888888888887774
No 130
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.73 E-value=1e+02 Score=29.84 Aligned_cols=46 Identities=17% Similarity=0.375 Sum_probs=29.5
Q ss_pred CCCCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 522 QRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 522 ~~~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
.++...+.++++++..|.+|+.--+.++.....++..+|.....+.
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4556677788888888777776666666555555555555444443
No 131
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.68 E-value=1.2e+02 Score=28.14 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=26.5
Q ss_pred EEEeccceeEEEEeccc----cccCceEEEEeCCcEEEE
Q 008222 52 KIIPFYEVTAVRRAKTA----GIFPNAIEIFAAGKKYFF 86 (573)
Q Consensus 52 ~~Ip~~dI~~I~K~~ta----~i~pNaI~I~t~~~k~~F 86 (573)
..||+.||++|+-.++. +--|+..+|.|.+-.|+-
T Consensus 41 KeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~~vY~V 79 (117)
T cd01239 41 KEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTTNVYFV 79 (117)
T ss_pred EEeehHHheEEeccCCCcCCCCCCCcEEEEEecCEEEEe
Confidence 89999999999955432 235888999997765553
No 132
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=22.64 E-value=1.1e+02 Score=37.72 Aligned_cols=50 Identities=14% Similarity=0.245 Sum_probs=42.2
Q ss_pred CCCCcchHHHHHHhhchhhHH-HHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 008222 522 QRSAESIPWLERRMHYLKDEM-LMVEARLERMWHEHAVLRAQLKDIEQLHK 571 (573)
Q Consensus 522 ~~~~~~~~w~~~r~~~~~~e~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (573)
..-++.+.-|+|+|.+++.+- .-+..+++.++.++.||+.+.+.||.+..
T Consensus 368 ~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~ 418 (1074)
T KOG0250|consen 368 RKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQIN 418 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999988776 88999999999999999999999987653
No 133
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.63 E-value=1.9e+02 Score=26.11 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=35.0
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 531 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 531 ~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
+++.+.+|++....++..++.|.+++++|+.++..++.
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999988753
No 134
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=22.62 E-value=1e+02 Score=31.71 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=34.6
Q ss_pred hHHHHHH----hhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 008222 528 IPWLERR----MHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH 570 (573)
Q Consensus 528 ~~w~~~r----~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 570 (573)
..|+-+| |..|.+.-.-.+..+|+++.|+..||.+|+.|+..+
T Consensus 96 ~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~~ 142 (232)
T KOG2483|consen 96 TLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLSLPQ 142 (232)
T ss_pred hhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 5666666 456777888888999999999999999999877443
No 135
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=22.43 E-value=6.2e+02 Score=23.38 Aligned_cols=53 Identities=8% Similarity=0.073 Sum_probs=35.3
Q ss_pred eEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhcc
Q 008222 318 FRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKN 384 (573)
Q Consensus 318 F~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v~~l~e~lk~~~ 384 (573)
+....+|.|+.. +++|+|.+..... .+ . ....++.+-+...++.++++++...
T Consensus 87 ~~~~~~~~l~~~----~~gT~v~~~~~~~-~~-~--------~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 87 GESEVRFELAPE----GDGTRLTLTHRLL-DE-R--------FGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred CCceEEEEEEEc----CCCEEEEEEEecc-Cc-h--------hhhhhhcccHHHHHHHHHHHHcCCC
Confidence 344667778764 3578888776652 22 1 2456777888888888888887654
No 136
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.40 E-value=1.3e+02 Score=30.56 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=27.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 008222 537 YLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHK 571 (573)
Q Consensus 537 ~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (573)
.+|+|| |-.++.||.++..||.||+.++..|+
T Consensus 96 q~k~Ei---ersi~~a~~kie~lkkql~eaKi~r~ 127 (222)
T KOG3215|consen 96 QKKLEI---ERSIQKARNKIELLKKQLHEAKIVRL 127 (222)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456776 78899999999999999999988654
No 137
>PRK10963 hypothetical protein; Provisional
Probab=22.26 E-value=95 Score=31.31 Aligned_cols=26 Identities=12% Similarity=0.339 Sum_probs=14.0
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHH
Q 008222 527 SIPWLERRMHYLKDEMLMVEARLERM 552 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~e~~~~~~ 552 (573)
+|-=.|+.+..||++....|.+|+.|
T Consensus 38 aVSL~ErQ~~~LR~r~~~Le~~l~~L 63 (223)
T PRK10963 38 TVSLVEWQMARQRNHIHVLEEEMTLL 63 (223)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555444
No 138
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.08 E-value=1.8e+02 Score=26.62 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=38.6
Q ss_pred CcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008222 525 AESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 566 (573)
Q Consensus 525 ~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~ 566 (573)
.|+..=|++|+..+..++.-.|.+.++++..+.-+..+|..+
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999988765
No 139
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=22.05 E-value=1.9e+02 Score=23.71 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhhHHHhhhc
Q 008222 543 LMVEARLERMWHEHAV-LRAQLKDIEQLHKR 572 (573)
Q Consensus 543 ~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~ 572 (573)
+-||.-|+=|++||+. |+.==..+|+|+++
T Consensus 6 ~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~ 36 (60)
T PF14916_consen 6 QSLEKSILFLQQEHAQTLKGLHAEIERLQKR 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466777777777776 44444556777653
No 140
>PRK02119 hypothetical protein; Provisional
Probab=21.71 E-value=2.7e+02 Score=23.42 Aligned_cols=41 Identities=24% Similarity=0.299 Sum_probs=27.2
Q ss_pred HHHHhhchhhHHHHHHHHHHH-------HHHHHHHHHHHHhhH-HHhhh
Q 008222 531 LERRMHYLKDEMLMVEARLER-------MWHEHAVLRAQLKDI-EQLHK 571 (573)
Q Consensus 531 ~~~r~~~~~~e~~~~e~~~~~-------~~~~~~~~~~~~~~~-~~~~~ 571 (573)
++.|+..|-.=+.--|..++. .+++...|+.+|+.| ++|+.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777775555555666554 477788888888776 45543
No 141
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.56 E-value=2e+02 Score=26.57 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=34.7
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 531 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 531 ~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
++..+.+|++-...++..++.|..+.++++.+++.+..
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 129 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQ 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999987754
No 142
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=21.53 E-value=1.1e+02 Score=25.13 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=15.5
Q ss_pred chHHHHHHhhchhhHHHHHHHHH
Q 008222 527 SIPWLERRMHYLKDEMLMVEARL 549 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~e~~~ 549 (573)
+|+=|+.||-.|.+|+.-.||.+
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788877777765555544
No 143
>PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues. Haemerythrin is an oxygen-binding protein found in the vascular system and coelemic fluid, or in muscles (myohaemerythrin) in invertebrates []. Many of the homologous proteins found in prokaryotes are multi-domain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (IPR000160 from INTERPRO) and methyl-accepting chemotaxis protein (MCP) signalling domain (IPR004089 from INTERPRO). Most haemerythrins are oxygen-carriers with a bound non-haem iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. The prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium. Haemerythrins and myohaemerythrins [, ] are small proteins of about 110 to 129 amino acid residues that bind two iron atoms. They are left-twisted 4-alpha-helical bundles, which provide a hydrophobic pocket where dioxygen binds as a peroxo species, interacting with adjacent aliphatic side chains via van der Waals forces []. In both haemerythrins and myohaemerythrins, the active centre is a binuclear iron complex, bound directly to the protein via 7 amino acid side chains [], 5 His, 1 Glu and 1 Asp []. Ovohaemerythrin [], a yolk protein from the leech Theromyzon tessulatum seems to belong to this family of proteins, it may play a role in the detoxification of free iron after a blood meal []. This entry represents a haemerythrin/HHE cation-binding motif that occurs as a duplicated domain in haemerythrin and related proteins. This domain binds iron in haemerythrin, but can bind other metals in related proteins, such as cadmium in a Nereis diversicolor protein (P80255 from SWISSPROT). A bacterial protein, Q7WX96 from SWISSPROT, is a regulator of response to NO, which suggests a different set-up for its metal ligands. A protein from Cryptococcus neoformans (Filobasidiella neoformans) that contains haemerythrin/HHE cation-binding motifs is also involved in NO response []. A Staphylococcus aureus protein (P72360 from SWISSPROT) has been noted to be important when the organism switches to living in environments with low oxygen concentrations; perhaps this protein acts as an oxygen store or scavenger.; PDB: 3CAX_A 3V5Z_B 3U9M_G 3V5Y_A 3U9J_B 3V5X_A 2MHR_A 1A7E_A 1A7D_A 2IGF_P ....
Probab=21.47 E-value=1.8e+02 Score=25.02 Aligned_cols=36 Identities=28% Similarity=0.469 Sum_probs=28.5
Q ss_pred HhhchhhHHHH----------HHHHHHHHHHHHHHHHHHHhhHHHh
Q 008222 534 RMHYLKDEMLM----------VEARLERMWHEHAVLRAQLKDIEQL 569 (573)
Q Consensus 534 r~~~~~~e~~~----------~e~~~~~~~~~~~~~~~~~~~~~~~ 569 (573)
+.|+-.||..+ .-+.++.|++||..+++.++.|+..
T Consensus 48 ~~H~~~EE~~l~p~l~~~~~~~~~~~~~~~~eH~~~~~~l~~l~~~ 93 (133)
T PF01814_consen 48 RHHHAREEEYLFPALERRDPRGDALIAELRREHEEIRALLDELEEA 93 (133)
T ss_dssp HHHHHHHHHHHHTTHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccchhccccchhhHHHHHHHHHHHHHHHHHH
Confidence 66777777766 2356679999999999999998765
No 144
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=21.37 E-value=1.4e+02 Score=30.94 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=34.1
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 008222 533 RRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH 570 (573)
Q Consensus 533 ~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 570 (573)
-.|.-|-.||-|||---.|+-+|++.+-+|.++||.|-
T Consensus 113 ekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L 150 (254)
T KOG2196|consen 113 EKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLL 150 (254)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999863
No 145
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=21.25 E-value=1.8e+02 Score=25.79 Aligned_cols=35 Identities=14% Similarity=0.337 Sum_probs=28.0
Q ss_pred EEEeccceeEEEEeccccccCceEEEEeCCcEEEEE
Q 008222 52 KIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFA 87 (573)
Q Consensus 52 ~~Ip~~dI~~I~K~~ta~i~pNaI~I~t~~~k~~F~ 87 (573)
-+|++.++..|.+...+ --+|+|.|.|....|.|+
T Consensus 50 ~vI~L~~c~~v~~~~d~-k~~~~f~i~t~dr~f~l~ 84 (101)
T cd01257 50 RVIPLESCFNINKRADA-KHRHLIALYTRDEYFAVA 84 (101)
T ss_pred EEEEccceEEEeecccc-ccCeEEEEEeCCceEEEE
Confidence 69999999999876442 246899999988777775
No 146
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=21.21 E-value=1.6e+02 Score=32.03 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=37.1
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008222 526 ESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 566 (573)
Q Consensus 526 ~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~ 566 (573)
|-+.|+-..+.-|.++.......-+||+.|+..|.+||+.+
T Consensus 130 el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~ 170 (342)
T PF06632_consen 130 ELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKF 170 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999998999999999999999999876
No 147
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.16 E-value=1.9e+02 Score=29.82 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=35.9
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHHH--------------------HHHHHHHHHHhhHHHhh
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERMW--------------------HEHAVLRAQLKDIEQLH 570 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~--------------------~~~~~~~~~~~~~~~~~ 570 (573)
-.|+..||..=|..|+..+...||.+|++. .=..-.|-|+..||.|-
T Consensus 120 k~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lL 186 (233)
T PF04065_consen 120 KEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLL 186 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999988543 22344566777777653
No 148
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=20.97 E-value=38 Score=34.94 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHhheeeeeecCCCceeecCCCcccCCCcccCCCCCCCcchHHHH------HHhhchhhHHHHHHHHHHHHHHH
Q 008222 482 AFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLE------RRMHYLKDEMLMVEARLERMWHE 555 (573)
Q Consensus 482 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~------~r~~~~~~e~~~~e~~~~~~~~~ 555 (573)
.+.+++++.+..+.|+.+..+-....+.....+...+.-.........|+. +....|++|-...++++++++.+
T Consensus 12 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~ 91 (276)
T PRK13922 12 LLLLLILLLLLALALLLADRRLGSLSPVRQVVGDVVSPVQRVVNAPREFVSGVFESLASLFDLREENEELKKELLELESR 91 (276)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhHHHhhh
Q 008222 556 HAVLRAQLKDIEQLHK 571 (573)
Q Consensus 556 ~~~~~~~~~~~~~~~~ 571 (573)
.+.+++-.+..++||+
T Consensus 92 ~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 92 LQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHH
No 149
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=20.81 E-value=6.2e+02 Score=22.74 Aligned_cols=50 Identities=12% Similarity=-0.008 Sum_probs=30.4
Q ss_pred EEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 008222 320 VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLK 381 (573)
Q Consensus 320 Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v~~l~e~lk 381 (573)
....+.|+.. .++|+|.+.-...+.... ...+++..-+...++.++++|.
T Consensus 93 s~v~~~l~~~----~~gT~l~~~~~~~~~~~~--------~~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 93 SLATVEFAPE----GGGTRLTLTEQGAFLDGD--------DDPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred eEEEEEEEEC----CCCEEEEEEEEEeccccc--------chhhhHHHHHHHHHHHHHHHHh
Confidence 4467777764 357999987654322111 1235666777777777777764
No 150
>PRK02793 phi X174 lysis protein; Provisional
Probab=20.46 E-value=2.9e+02 Score=23.09 Aligned_cols=41 Identities=32% Similarity=0.430 Sum_probs=27.8
Q ss_pred HHHHhhchhhHHHHHHHHHHHH-------HHHHHHHHHHHhhH-HHhhh
Q 008222 531 LERRMHYLKDEMLMVEARLERM-------WHEHAVLRAQLKDI-EQLHK 571 (573)
Q Consensus 531 ~~~r~~~~~~e~~~~e~~~~~~-------~~~~~~~~~~~~~~-~~~~~ 571 (573)
++.||..|-.-+.--|.-++.| +++...|+.+|+.| ++|+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777766666666666654 66777788887776 45544
No 151
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=20.46 E-value=1.3e+02 Score=34.62 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=29.6
Q ss_pred HHHHHHhhchhhHH----H-------HHHHHHHHHHHHHHHHHHHHhhH
Q 008222 529 PWLERRMHYLKDEM----L-------MVEARLERMWHEHAVLRAQLKDI 566 (573)
Q Consensus 529 ~w~~~r~~~~~~e~----~-------~~e~~~~~~~~~~~~~~~~~~~~ 566 (573)
+||++||..|+.++ . --|+.|.+||.|...|=..|+.|
T Consensus 320 ~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~L 368 (546)
T KOG0977|consen 320 SALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKL 368 (546)
T ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999887653 2 24678999999998887777665
No 152
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.45 E-value=2.8e+02 Score=24.56 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=30.4
Q ss_pred CCCCCcchHHHHHHhhchh------hH------------------HHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 008222 521 GQRSAESIPWLERRMHYLK------DE------------------MLMVEARLERMWHEHAVLRAQLKDIEQL 569 (573)
Q Consensus 521 ~~~~~~~~~w~~~r~~~~~------~e------------------~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 569 (573)
--|+.+.+++|. .|..|| +| ..+.+.+++.+.++.+.|+..+..|++.
T Consensus 37 R~Y~~~~l~~l~-~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (113)
T cd01109 37 RDFTEEDLEWLE-FIKCLRNTGMSIKDIKEYAELRREGDSTIPERLELLEEHREELEEQIAELQETLAYLDYK 108 (113)
T ss_pred ccCCHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999994 555554 12 2445566666666666666666666554
No 153
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=20.38 E-value=2.7e+02 Score=26.73 Aligned_cols=43 Identities=19% Similarity=0.495 Sum_probs=29.9
Q ss_pred ecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhh
Q 008222 308 EVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKI 357 (573)
Q Consensus 308 ~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~I 357 (573)
...|=||- +..++|-|.+. +.+.|++.....-+|+ +.++..+|
T Consensus 78 ~l~~GPFk---~L~~~W~F~pl---~~~~ckV~f~ldfeF~-s~ll~~~~ 120 (146)
T COG2867 78 KLIDGPFK---YLKGGWQFTPL---SEDACKVEFFLDFEFK-SRLLGALI 120 (146)
T ss_pred hhhcCChh---hhcCceEEEEC---CCCceEEEEEEEeeeh-hHHHHHHH
Confidence 44555665 48999999996 4678988888888874 34544444
No 154
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.09 E-value=3.4e+02 Score=21.10 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=28.5
Q ss_pred eEEEeccceeEEEEeccccccCceEEEEeCC-cEEEEEeecChHHH
Q 008222 51 QKIIPFYEVTAVRRAKTAGIFPNAIEIFAAG-KKYFFASFLSRDEA 95 (573)
Q Consensus 51 ~~~Ip~~dI~~I~K~~ta~i~pNaI~I~t~~-~k~~F~SF~sRD~a 95 (573)
+..|++.+ ..|.......--++++.|.+.+ ..|.|. .-+.++.
T Consensus 43 ~~~i~l~~-~~v~~~~~~~~~~~~f~i~~~~~~~~~~~-~~s~~~~ 86 (96)
T cd00821 43 KGSIPLSG-AEVEESPDDSGRKNCFEIRTPDGRSYLLQ-AESEEER 86 (96)
T ss_pred cceEEcCC-CEEEECCCcCCCCcEEEEecCCCcEEEEE-eCCHHHH
Confidence 37888888 6666655433357899999877 777775 3344443
Done!