Query 008222
Match_columns 573
No_of_seqs 234 out of 655
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 21:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qim_A PR10.2B; trans-zeatin, 93.8 3.7 0.00013 37.5 17.1 151 214-384 5-155 (158)
2 1em2_A MLN64 protein; beta bar 92.5 1.9 6.4E-05 41.3 13.7 149 216-378 69-225 (229)
3 1icx_A Protein LLR18A, LLPR10. 92.5 3.7 0.00013 37.3 15.0 150 214-384 4-153 (155)
4 1tw0_A Pathogenesis-related cl 92.5 3.9 0.00013 37.3 15.2 151 214-384 4-154 (157)
5 1e09_A PRU AV 1; allergen, maj 92.2 2.9 9.9E-05 38.2 13.9 148 214-384 4-155 (159)
6 4a8u_A Major pollen allergen B 92.0 6.1 0.00021 36.3 16.0 150 215-384 5-155 (159)
7 3p0l_A Steroidogenic acute reg 91.2 2 6.7E-05 41.0 12.1 146 216-375 58-211 (221)
8 2flh_A Cytokinin-specific bind 90.9 3.3 0.00011 37.8 12.8 143 214-383 4-153 (155)
9 2i9y_A Major latex protein-lik 90.9 3.3 0.00011 38.2 12.9 148 213-383 17-165 (166)
10 3rws_A MTN13 protein; zeatin, 90.7 6 0.00021 36.8 14.5 146 213-384 9-161 (168)
11 1jss_A Stard4, cholesterol-reg 90.4 2 6.8E-05 41.2 11.3 146 216-375 70-220 (224)
12 2vjg_A Major allergen DAU C 1; 90.1 11 0.00038 34.4 16.1 148 214-382 5-153 (154)
13 2wql_A Major allergen DAU C 1; 89.2 13 0.00045 34.0 16.8 147 215-382 6-153 (154)
14 2pcs_A Conserved protein; stru 87.8 14 0.00047 32.6 16.8 142 214-382 4-148 (162)
15 2r55_A STAR-related lipid tran 87.1 12 0.00042 35.5 14.3 79 297-377 144-227 (231)
16 3qsz_A STAR-related lipid tran 86.7 12 0.00041 34.3 13.7 143 215-376 29-177 (189)
17 1ln1_A PC-TP, phosphatidylchol 85.1 11 0.00037 35.2 12.7 145 215-376 54-207 (214)
18 2ns9_A Hypothetical protein AP 85.0 18 0.00063 31.3 14.4 139 214-381 14-155 (157)
19 2vq5_A S-norcoclaurine synthas 84.8 12 0.00041 35.9 12.9 149 213-387 29-183 (201)
20 2pso_A STAR-related lipid tran 84.1 6.7 0.00023 38.2 10.9 81 299-388 150-233 (237)
21 3ie5_A Phenolic oxidative coup 80.5 36 0.0012 31.4 15.1 148 213-384 10-161 (165)
22 1t2k_D Cyclic-AMP-dependent tr 78.7 2.8 9.6E-05 32.6 4.9 38 526-563 22-59 (61)
23 1ci6_A Transcription factor AT 78.6 2.7 9.1E-05 33.2 4.7 38 528-565 25-62 (63)
24 3p9v_A Uncharacterized protein 77.2 40 0.0014 30.2 15.1 144 217-387 11-156 (161)
25 2e3n_A Lipid-transfer protein 75.0 15 0.00051 35.6 10.1 83 300-383 157-251 (255)
26 3f08_A Uncharacterized protein 74.9 45 0.0015 29.6 14.0 134 215-383 4-139 (146)
27 3kl1_A PYL2, putative uncharac 74.3 60 0.002 30.7 14.3 150 211-382 33-183 (190)
28 1fxk_A Prefoldin; archaeal pro 64.7 7.7 0.00026 32.8 4.8 43 523-565 62-104 (107)
29 2zqm_A Prefoldin beta subunit 64.2 9 0.00031 32.8 5.2 44 523-566 67-110 (117)
30 2l9p_A Uncharacterized protein 60.7 53 0.0018 29.2 10.0 147 213-384 8-157 (164)
31 1nkp_B MAX protein, MYC proto- 60.5 7.2 0.00025 32.0 3.7 34 534-567 48-81 (83)
32 1nlw_A MAD protein, MAX dimeri 57.6 10 0.00035 31.2 4.1 33 534-566 48-80 (80)
33 2coa_A Protein kinase C, D2 ty 56.3 9.1 0.00031 34.3 3.8 36 52-87 49-89 (125)
34 1fxk_C Protein (prefoldin); ar 56.2 16 0.00055 32.2 5.5 44 524-567 86-129 (133)
35 3efg_A Protein SLYX homolog; x 55.2 14 0.00047 30.4 4.4 40 528-567 23-62 (78)
36 2wt7_A Proto-oncogene protein 55.2 19 0.00064 28.2 5.1 37 528-564 25-61 (63)
37 1nkp_A C-MYC, MYC proto-oncoge 52.8 13 0.00044 31.1 4.0 34 535-568 54-87 (88)
38 2cod_A Centaurin-delta 1; ARF 52.7 26 0.0009 29.0 6.1 45 52-102 50-94 (115)
39 2xdj_A Uncharacterized protein 52.4 21 0.00073 29.7 5.2 38 528-565 22-59 (83)
40 3q63_A MLL2253 protein; struct 52.0 1.2E+02 0.0041 26.5 10.8 138 213-387 9-146 (151)
41 3a7p_A Autophagy protein 16; c 50.7 21 0.00072 33.0 5.4 41 528-568 77-117 (152)
42 1hjb_A Ccaat/enhancer binding 49.3 22 0.00074 29.9 4.8 33 532-564 42-74 (87)
43 3ajw_A Flagellar FLIJ protein; 48.9 28 0.00094 30.8 5.9 45 528-572 76-120 (150)
44 1xfs_A NC_840354, conserved hy 48.8 1.5E+02 0.005 26.5 12.9 24 212-235 9-32 (178)
45 3k3k_A Abscisic acid receptor 47.0 1.3E+02 0.0044 29.0 10.7 147 211-383 48-198 (211)
46 3p51_A Uncharacterized protein 46.9 1.6E+02 0.0056 26.5 12.8 135 215-381 4-141 (160)
47 3ghg_A Fibrinogen alpha chain; 46.6 21 0.00072 39.1 5.4 38 531-568 115-152 (562)
48 1jnm_A Proto-oncogene C-JUN; B 46.4 12 0.00039 29.2 2.6 36 528-563 24-59 (62)
49 2zdi_C Prefoldin subunit alpha 46.0 23 0.0008 32.0 5.0 45 524-568 96-140 (151)
50 1gu4_A CAAT/enhancer binding p 45.2 17 0.00058 29.9 3.5 32 532-563 42-73 (78)
51 2d9z_A Protein kinase C, NU ty 44.9 17 0.00059 32.7 3.8 36 52-87 49-89 (129)
52 3oji_A Abscisic acid receptor 44.6 2.1E+02 0.0072 27.1 13.1 153 213-383 30-183 (189)
53 1g6u_A Domain swapped dimer; d 44.3 60 0.0021 23.4 5.7 27 540-566 20-46 (48)
54 2yy0_A C-MYC-binding protein; 42.8 23 0.00079 27.0 3.7 30 536-565 22-51 (53)
55 3jrs_A PYL1, putative uncharac 42.7 2.3E+02 0.008 27.1 13.3 109 210-339 51-161 (208)
56 1fao_A Dual adaptor of phospho 42.7 59 0.002 27.2 6.9 49 52-102 59-107 (126)
57 3qrz_A Abscisic acid receptor 42.5 6 0.00021 38.7 0.4 144 210-378 75-218 (223)
58 3mq7_A Bone marrow stromal ant 42.3 36 0.0012 30.1 5.3 38 528-565 73-110 (121)
59 3m91_A Proteasome-associated A 41.7 45 0.0015 25.3 5.1 40 527-566 10-49 (51)
60 3q0x_A Centriole protein; cent 40.4 39 0.0013 33.2 5.8 39 528-566 166-204 (228)
61 3bbp_D GRIP and coiled-coil do 39.1 30 0.001 27.9 3.9 49 525-573 21-69 (71)
62 1deq_A Fibrinogen (alpha chain 39.0 31 0.0011 36.3 5.1 39 530-568 117-155 (390)
63 2dn6_A KIAA0640 protein; PH do 38.5 1.5E+02 0.005 24.0 8.6 50 52-102 49-98 (115)
64 2le1_A Uncharacterized protein 38.1 1.9E+02 0.0066 24.8 12.3 139 215-383 4-144 (151)
65 3mtu_A Tropomyosin alpha-1 cha 36.9 67 0.0023 26.0 5.8 45 527-571 3-47 (75)
66 2hth_B Vacuolar protein sortin 35.8 39 0.0013 30.5 4.7 52 52-105 61-130 (140)
67 3ggn_A Uncharacterized protein 35.5 2.2E+02 0.0076 24.8 14.6 110 214-349 5-114 (155)
68 3pu2_A Uncharacterized protein 35.4 2.3E+02 0.008 25.0 16.1 147 211-384 11-158 (164)
69 3fo5_A Thioesterase, adipose a 35.2 1E+02 0.0034 30.4 8.0 117 214-347 89-216 (258)
70 3uid_A Putative uncharacterize 33.9 2.6E+02 0.0088 25.0 16.5 149 211-383 11-162 (168)
71 1vjh_A BET V I allergen family 29.0 2.7E+02 0.0094 23.8 13.0 117 213-384 5-121 (122)
72 3trt_A Vimentin; cytoskeleton, 28.2 95 0.0032 24.6 5.4 42 526-567 28-69 (77)
73 2lio_A Uncharacterized protein 26.6 3.1E+02 0.011 24.2 9.1 125 213-383 4-129 (136)
74 1deb_A APC protein, adenomatou 26.3 1.6E+02 0.0056 22.2 5.8 41 528-568 12-52 (54)
75 1nkp_B MAX protein, MYC proto- 25.4 52 0.0018 26.7 3.3 33 527-559 48-80 (83)
76 2ocy_A RAB guanine nucleotide 24.9 47 0.0016 30.8 3.2 39 529-567 111-149 (154)
77 2doh_C Fragment, plasminogen-b 24.9 50 0.0017 22.3 2.5 11 548-558 12-22 (30)
78 2ldk_A Uncharacterized protein 24.7 3.5E+02 0.012 23.6 14.9 145 212-383 11-161 (172)
79 3m9b_A Proteasome-associated A 24.5 85 0.0029 31.2 5.2 43 525-567 53-95 (251)
80 1fmh_B General control protein 24.1 80 0.0027 21.2 3.3 28 528-555 3-30 (33)
81 3efg_A Protein SLYX homolog; x 23.9 1.4E+02 0.0047 24.4 5.6 44 528-571 16-60 (78)
82 3he5_B Synzip2; heterodimeric 23.8 2.1E+02 0.0072 20.9 5.8 41 528-568 5-45 (52)
83 3put_A Hypothetical conserved 23.8 3.8E+02 0.013 23.7 14.7 143 213-384 9-154 (166)
84 2xdj_A Uncharacterized protein 23.3 1.6E+02 0.0055 24.3 6.0 27 542-568 22-48 (83)
85 1gd2_E Transcription factor PA 23.1 88 0.003 25.1 4.2 34 534-567 30-63 (70)
86 1eaz_A Tandem PH domain contai 22.6 1.1E+02 0.0038 25.2 5.1 49 52-101 55-105 (125)
87 3rd6_A MLL3558 protein; struct 21.7 4E+02 0.014 23.2 15.7 147 213-387 8-156 (161)
88 1dh3_A Transcription factor CR 21.5 49 0.0017 25.2 2.2 28 542-569 24-51 (55)
89 2wuj_A Septum site-determining 21.2 88 0.003 23.8 3.7 52 507-568 4-55 (57)
90 1bb1_B Designed, thermostable 21.0 1.3E+02 0.0043 20.6 3.9 29 534-562 3-31 (36)
91 3oja_B Anopheles plasmodium-re 20.3 1.1E+02 0.0036 33.0 5.5 28 540-567 551-578 (597)
92 1ci6_A Transcription factor AT 20.0 1.4E+02 0.0049 23.1 4.7 30 539-568 22-51 (63)
No 1
>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A
Probab=93.76 E-value=3.7 Score=37.49 Aligned_cols=151 Identities=12% Similarity=0.030 Sum_probs=84.1
Q ss_pred eEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEE
Q 008222 214 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 293 (573)
Q Consensus 214 ~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i 293 (573)
+...+.++++|++++|.++-.|-. +.+.+++......++.-+.|. .|..|.++|. + |.+.. ..++++
T Consensus 5 ~~~~e~~i~a~a~kvw~~~~~d~~-~~~pk~~~~i~s~~i~eGdgg----~Gsir~~~~~-~-----g~~~~--~~kErl 71 (158)
T 2qim_A 5 TFQDEYTSTIAPAKLYKALVTDAD-IIIPKAVETIQSVEIVEGNGG----PGTIKKLTFI-E-----GGESK--YVLHKI 71 (158)
T ss_dssp EEEEEEEESSCHHHHHHHHTTTHH-HHHHHHCTTEEEEEEEESSSS----TTCEEEEEEE-E-----TTEEE--EEEEEE
T ss_pred EEEEEEEecCCHHHHHHHHhcCcc-chhhhHHhhCcEEEEEecCCC----CCeEEEEEEc-C-----CCcce--eEEEEE
Confidence 456678899999999997653431 355666533344445556662 2678999886 2 33322 245666
Q ss_pred EeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHH
Q 008222 294 RVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWI 373 (573)
Q Consensus 294 ~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v 373 (573)
...++....+.-+..-.|+.-..+=.....|.+.+.+ .++|.++..+ +|.+.. -........+..++.+..+.
T Consensus 72 ~~~D~~~~~~~y~iieG~~~~~~~~~~~~~~~v~~~~---~~gs~v~wt~--~y~~~~--~~~~~~~~~~~~~~~~~~~~ 144 (158)
T 2qim_A 72 EAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGA---NGGSIGKVTI--KIETKG--DAQPNEEEGKAAKARGDAFF 144 (158)
T ss_dssp EEEEGGGTEEEEEEEEESSCCCSEEEEEEEEEEEECS---TTCEEEEEEE--EEEEST--TCCCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEeccCCccceEEEEEEEEEEecC---CCCEEEEEEE--EEEECC--CCCCCHHHHHHHHHHHHHHH
Confidence 6555433222222222232111233345567777752 3468665544 454321 11112223334578899999
Q ss_pred HHHHHHHhhcc
Q 008222 374 GMAHDVLKQKN 384 (573)
Q Consensus 374 ~~l~e~lk~~~ 384 (573)
+.+.+||.+++
T Consensus 145 k~ie~yll~~p 155 (158)
T 2qim_A 145 KAIESYLSAHP 155 (158)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHHhCc
Confidence 99999998774
No 2
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=92.52 E-value=1.9 Score=41.33 Aligned_cols=149 Identities=12% Similarity=0.027 Sum_probs=78.7
Q ss_pred EEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCC-CCceEEEEEEeee---cccCCCceeeeeEEE
Q 008222 216 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE-FGYSRDLSFQHPI---KVYFGAKFGSCKETQ 291 (573)
Q Consensus 216 l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~-~~~tR~vsYt~PL---~~p~GPKst~c~etQ 291 (573)
-+..+++++++++|+.++.|.. .|...|-.+......+. +..+. +.|...- ..|+.|..- |.. .
T Consensus 69 k~~~~v~~~~~~v~~~~~~d~~---------~r~~Wd~~~~~~~vle~~~~~t~-I~~~~~~p~~~~~~~~RDf-v~~-r 136 (229)
T 1em2_A 69 ILKTFLPCPAELVYQEVILQPE---------RMVLWNKTVTACQILQRVEDNTL-ISYDVSAGAAGGVVSPRDF-VNV-R 136 (229)
T ss_dssp EEEEEESSCHHHHHHHTTTCHH---------HHTTTCTTEEEEEEEEEETTTEE-EEEEEECCBTTTTBCCEEE-EEE-E
T ss_pred EEEEEecCCHHHHHHHHHhCcc---------chhhcccccceEEEEEecCCCeE-EEEEEecCcCCCCcCCCee-EEE-E
Confidence 4567789999999965666531 12222222222211110 11232 4444221 122333321 221 1
Q ss_pred EEEeeeCCeEEEEEeeecCCCCCCC-eeEEE---EEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHH
Q 008222 292 KFRVYRNSHLVIETSQEVHDVPYGD-YFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRD 367 (573)
Q Consensus 292 ~i~~~~~~~yVVet~t~t~DVPYGD-sF~Ve---~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke 367 (573)
.....++..+++..++.-+++|-.. +=+++ ..|+|++.+. ++++|++...+.++..++ +=+.++.+.+..++-+
T Consensus 137 ~~~~~~~~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~-~~~~t~vt~~~~~Dp~G~-iP~~l~n~~~~~~~~~ 214 (229)
T 1em2_A 137 RIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSAS-NPRVCTFVWILNTDLKGR-LPRYLIHQSLAATMFE 214 (229)
T ss_dssp EEEECSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSS-CTTCEEEEEEECEECCSS-SCHHHHHHHHHHHHHH
T ss_pred EEEEcCCEEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCC-CCCcEEEEEEEEECCCCC-CCHHHHHHHHHHHHHH
Confidence 2222233344566677777888543 33343 5799998642 356899999999998763 3466666666666666
Q ss_pred HHHHHHHHHHH
Q 008222 368 VYAMWIGMAHD 378 (573)
Q Consensus 368 ~~~~~v~~l~e 378 (573)
+++.+-+.+++
T Consensus 215 ~~~~Lr~~~~~ 225 (229)
T 1em2_A 215 FAFHLRQRISE 225 (229)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66655554443
No 3
>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A
Probab=92.50 E-value=3.7 Score=37.31 Aligned_cols=150 Identities=9% Similarity=0.002 Sum_probs=83.9
Q ss_pred eEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEE
Q 008222 214 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 293 (573)
Q Consensus 214 ~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i 293 (573)
+...+.++++|++++|.++-.|-. +.+.+++......++.-+.|. .|..|.++|. . |.+.. ..++++
T Consensus 4 ~~~~e~~i~a~a~kvw~~~~~d~~-~~~pk~~~~i~s~~i~eG~g~----~Gsir~~~~~---~---G~~~~--~~kErl 70 (155)
T 1icx_A 4 AFENEQSSTVAPAKLYKALTKDSD-EIVPKVIEPIQSVEIVEGNGG----PGTIKKIIAI---H---DGHTS--FVLHKL 70 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHTTTHH-HHHHHHSTTEEEEEEEESSSS----TTCEEEEEEE---S---SSSEE--EEEEEE
T ss_pred EEEEEEEecCCHHHHHHHHhcCcc-hhcchhhhhccEEEEEecCCC----CCeEEEEEEe---c---CCcce--eEEEEE
Confidence 345678899999999997753431 345666633344445556662 2678999886 2 33322 345666
Q ss_pred EeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHH
Q 008222 294 RVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWI 373 (573)
Q Consensus 294 ~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v 373 (573)
..+++....+.-+..-.|+.-..+=.....|.+.+.+ .++|.++..+ +|.+..-. ......+..++.+..++
T Consensus 71 ~~~D~~~~~~~y~iieGd~~~~~~~~~~~~~~v~~~~---~~gs~v~w~~--~y~~~~~~---~~~~~~~~~~~~~~~~~ 142 (155)
T 1icx_A 71 DAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGP---DGGSIGKINV--KFHTKGDV---LSETVRDQAKFKGLGLF 142 (155)
T ss_dssp EEEEGGGTEEEEEEEEETTSCTTEEEEEEEEEEEECG---GGCEEEEEEE--EEEESSSS---CCHHHHTTHHHHHHHHH
T ss_pred EEEeccCCEEEEEEEecCCCccceEEEEEEEEEEecC---CCCEEEEEEE--EEEECCCC---CCHHHHHHHHHHHHHHH
Confidence 6565433222222222232211233345566677642 2367665554 45443211 22222334478889999
Q ss_pred HHHHHHHhhcc
Q 008222 374 GMAHDVLKQKN 384 (573)
Q Consensus 374 ~~l~e~lk~~~ 384 (573)
+.+.+||.+++
T Consensus 143 k~ie~yll~~p 153 (155)
T 1icx_A 143 KAIEGYVLAHP 153 (155)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCC
Confidence 99999998775
No 4
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*
Probab=92.49 E-value=3.9 Score=37.30 Aligned_cols=151 Identities=13% Similarity=0.057 Sum_probs=83.6
Q ss_pred eEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEE
Q 008222 214 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 293 (573)
Q Consensus 214 ~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i 293 (573)
+...+.++++|++++|.++-.|-. +.+.+++......++.-+.|. .|..|.++|. + |.+. -..++++
T Consensus 4 ~~~~e~~i~a~a~kvw~~~~~d~~-~~~pk~~~~i~s~~i~eG~g~----~Gsir~~~~~-~-----G~~~--~~~kErl 70 (157)
T 1tw0_A 4 VFRDETSSSVAPAKLYKALTKDSD-TIAQKIDGPIQSIELVEGNGG----VGTIKKITAN-E-----GDKT--SFVLQKV 70 (157)
T ss_dssp EEEEEEEESSCHHHHHHHHHHTGG-GGGGGSCSSEEEEEEEESSSS----TTCEEEEEEE-E-----TTEE--EEEEEEE
T ss_pred EEEEEEEecCCHHHHHHHHhcCcc-hhhhhHHhhccEEEEEeCCCC----CCeEEEEEee-C-----CCcc--ceEEEEE
Confidence 445678899999999998753432 233444422233344456662 2678999886 2 3332 2345677
Q ss_pred EeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHH
Q 008222 294 RVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWI 373 (573)
Q Consensus 294 ~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v 373 (573)
..+++....+.-+..-.|+.-..+=.....|.+.+.+ .++|.++..+ +|.+.. -........+..++.+..+.
T Consensus 71 ~~~D~~~~~~~y~iieGd~~~~~~~~~~~~~~v~~~~---~~gs~v~w~~--~y~~~~--~~~~~~~~~~~~~~~~~~~~ 143 (157)
T 1tw0_A 71 DAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGS---GGGSISKVTL--KFHTKG--DAPLSDAVRDDALAKGAGFF 143 (157)
T ss_dssp EEEETTTTEEEEEEEECTTSCTTEEEEEEEEEEEECS---SSSEEEEEEE--EEEEST--TCCCCHHHHHHHHHHHHHHH
T ss_pred EEEeccCCEEEEEEEecCCCccceEEEEEEEEEEecC---CCCEEEEEEE--EEEECC--CCCCCHHHHHHHHHHHHHHH
Confidence 6666544333333332333222233445567777752 3468665554 454321 11112223334578899999
Q ss_pred HHHHHHHhhcc
Q 008222 374 GMAHDVLKQKN 384 (573)
Q Consensus 374 ~~l~e~lk~~~ 384 (573)
+.+.+||.+++
T Consensus 144 k~ie~yll~~p 154 (157)
T 1tw0_A 144 KAIEGYVLANP 154 (157)
T ss_dssp HHHHHHHHHCG
T ss_pred HHHHHHHHhCc
Confidence 99999998775
No 5
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A
Probab=92.16 E-value=2.9 Score=38.22 Aligned_cols=148 Identities=12% Similarity=0.149 Sum_probs=83.3
Q ss_pred eEEEEeEEecCHHHHHhhhccCCchHHHHHHHH-HcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEE
Q 008222 214 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQK 292 (573)
Q Consensus 214 ~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~-~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~ 292 (573)
+...+.++++|++++|.++-.|- .+.+.+++. .....++.-+.|. .|..|.++|. . |.+.. ..+++
T Consensus 4 ~~~~e~~i~ap~~~vw~~~~~d~-~~~~pk~~P~~i~s~~~~eGdgg----~Gsvr~~~~~---~---G~~~~--~~kEr 70 (159)
T 1e09_A 4 TYESEFTSEIPPPRLFKAFVLDA-DNLVPKIAPQAIKHSEILEGDGG----PGTIKKITFG---E---GSQYG--YVKHK 70 (159)
T ss_dssp EEEEEEEESSCHHHHHHHHTTTH-HHHHHHHCTTTEEEEEEEESSSS----TTCEEEEEEC---C---SSSCE--EEEEE
T ss_pred EEEEEEEecCCHHHHHHHHhcCc-cccchhhChhhccEEEEEeCCCC----CceEEEEEec---C---CCCce--EEEEE
Confidence 45567889999999999765342 135566653 2333344456662 2678998884 1 33222 34567
Q ss_pred EEeeeCCeEEEEEeeecCCC---CCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHH
Q 008222 293 FRVYRNSHLVIETSQEVHDV---PYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVY 369 (573)
Q Consensus 293 i~~~~~~~yVVet~t~t~DV---PYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~ 369 (573)
+...++....+.-+..-.|+ ||.+ ....|.+.+. +.++|.++..+ +|.+..- ..+.....+..++.+
T Consensus 71 l~~~D~~~~~~~y~iieG~~~~~~~~~---~~~~~~v~~~---~~~gs~v~wt~--~y~~~~~--~~~~~~~~~~~~~~~ 140 (159)
T 1e09_A 71 IDSIDKENYSYSYTLIEGDALGDTLEK---ISYETKLVAS---PSGGSIIKSTS--HYHTKGN--VEIKEEHVKAGKEKA 140 (159)
T ss_dssp EEEEETTTTEEEEEECCCTTTGGGEEE---EEEEEEECCC---TTSSEEEEEEE--EEEECSS--CCCCHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEEEEEecccCcccceE---EEEEEEEEec---CCCCEEEEEEE--EEEECCC--CCCCHHHHHHHHHHH
Confidence 76666544344433332333 3332 3455666554 23467665544 4544211 112222233558889
Q ss_pred HHHHHHHHHHHhhcc
Q 008222 370 AMWIGMAHDVLKQKN 384 (573)
Q Consensus 370 ~~~v~~l~e~lk~~~ 384 (573)
..+.+.+.+||.+++
T Consensus 141 ~~~~k~ie~yll~~~ 155 (159)
T 1e09_A 141 SNLFKLIETYLKGHP 155 (159)
T ss_dssp HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999998774
No 6
>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A
Probab=92.03 E-value=6.1 Score=36.29 Aligned_cols=150 Identities=11% Similarity=0.121 Sum_probs=83.7
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHH-HcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 293 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~-~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i 293 (573)
...+.+.++|++++|.++..|-. ..+.+.+. .-...++.-+.|. .|..|.++|.. |.+. ...++++
T Consensus 5 ~~~ei~i~a~a~kvw~~~~~d~~-~l~pk~~P~~i~s~e~~eGdgg----~Gsir~~~~~~------g~~~--~~~kErl 71 (159)
T 4a8u_A 5 YETEATSVIPAARLFKAFILDGD-NLFPKVAPQAISSVENIEGNGG----PGTIKKISFPE------GFPF--KYVKDRV 71 (159)
T ss_dssp EEEEEEESSCHHHHHHHHTTTHH-HHHHHHCTTTCCEEEEEECSSS----TTCEEEEECCT------TSSC--SEEEEEE
T ss_pred EEEEEEecCCHHHHHHHHhcCcc-ccchhhCchhccEEEEEcCCCC----CceEEEEEEec------CCCc--cEEEEEE
Confidence 34577889999999998856532 34445443 2233344556663 36789888751 3322 2456777
Q ss_pred EeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHH
Q 008222 294 RVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWI 373 (573)
Q Consensus 294 ~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v 373 (573)
..+++....+.-+..-.|++-..+=.....+.+.+. +.++|.++..+ .|.+.. -..+.-...+..++....+.
T Consensus 72 ~~iD~~~~~~~y~iiegd~l~~~~~~y~~ti~v~p~---~~ggs~v~wt~--~y~~~~--~~~~~~~~~k~~~~~~~~~~ 144 (159)
T 4a8u_A 72 DEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVAT---PNGGSILKINN--KYHTKG--DHEVKAEQIKASKEMGETLL 144 (159)
T ss_dssp EEEETTTTEEEEEEEEETTCBTTEEEEEEEEEEEEC---TTSCEEEEEEE--EEEESS--SCCC-CHHHHHHHHHHHHHH
T ss_pred EEEccccCEEEEEEeeCCCCccceEEEEEEEEEEEC---CCCceEEEEEE--EEEECC--CCcCCHHHHHHHHHHHHHHH
Confidence 777755422332322234331112223344556664 23478755444 454321 11223334455678888899
Q ss_pred HHHHHHHhhcc
Q 008222 374 GMAHDVLKQKN 384 (573)
Q Consensus 374 ~~l~e~lk~~~ 384 (573)
+.+..||-+++
T Consensus 145 k~ie~yll~np 155 (159)
T 4a8u_A 145 RAVESYLLAHS 155 (159)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhhCh
Confidence 99999998775
No 7
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=91.25 E-value=2 Score=41.04 Aligned_cols=146 Identities=10% Similarity=-0.013 Sum_probs=77.2
Q ss_pred EEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccC-CCCceEEEEEEeee---cccCCCceeeeeEEE
Q 008222 216 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHY-EFGYSRDLSFQHPI---KVYFGAKFGSCKETQ 291 (573)
Q Consensus 216 l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~-~~~~tR~vsYt~PL---~~p~GPKst~c~etQ 291 (573)
-++.++++|++++|++|+.|-. .|...|-.+......+ -+..+. +.|..-- ..|+.|..- |.. .
T Consensus 58 k~~~~v~~~~~~v~~~l~~d~~---------~r~~Wd~~~~~~~vle~~~~~t~-I~y~~~~~~~~~~v~~RDf-v~~-r 125 (221)
T 3p0l_A 58 RLEVVVDQPMERLYEELVERME---------AMGEWNPNVKEIKVLQKIGKDTF-ITHELAAEAAGNLVGPRDF-VSV-R 125 (221)
T ss_dssp EEEEEESSCHHHHHHHHTTTGG---------GTTTSCTTCSEEEEEEECSSSEE-EEEEEECC---CCSCCEEE-EEE-E
T ss_pred EEEEEEcCCHHHHHHHHHhccc---------hhhhcCcchheEEEEEecCCCeE-EEEEeeccccCCccCCceE-EEE-E
Confidence 3557789999999999986531 1122222222221111 112233 4444321 123334322 211 1
Q ss_pred EEEeeeCCeEEEEEeeecCCCCCC-CeeEEE---EEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHH
Q 008222 292 KFRVYRNSHLVIETSQEVHDVPYG-DYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRD 367 (573)
Q Consensus 292 ~i~~~~~~~yVVet~t~t~DVPYG-DsF~Ve---~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke 367 (573)
.....++..+++..++..+++|-. ++-+++ ..|+|++.+. ++++|++.....++..+. +=+.++.+.+...+-+
T Consensus 126 ~~~~~~~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~-~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~ 203 (221)
T 3p0l_A 126 CAKRRGSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAG-SPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVD 203 (221)
T ss_dssp EEEECSSCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETT-EEEEEEEEEEECEECCSS-CCHHHHHHHHHHHHHH
T ss_pred EEEEcCCeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCC-CCCcEEEEEEEEecCCCC-CCHHHHHHHHHHHHHH
Confidence 112223333445456666777764 444443 5799998742 233899999999998764 4466676666666666
Q ss_pred HHHHHHHH
Q 008222 368 VYAMWIGM 375 (573)
Q Consensus 368 ~~~~~v~~ 375 (573)
+++.+-+.
T Consensus 204 ~~~~Lr~~ 211 (221)
T 3p0l_A 204 FANHLRKR 211 (221)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554433
No 8
>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*
Probab=90.87 E-value=3.3 Score=37.80 Aligned_cols=143 Identities=8% Similarity=0.122 Sum_probs=76.5
Q ss_pred eEEEEeEEecCHHHHHhhhccCCchHHHHHHHH-HcCCcceEeccccccCCCCceEEEEEEeeecccCC-CceeeeeEEE
Q 008222 214 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFG-AKFGSCKETQ 291 (573)
Q Consensus 214 ~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~-~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~G-PKst~c~etQ 291 (573)
+...+.++++|++++|.++.+|-. .++.+++. .....++.-+.|. .|..|.++|. . | ++ ...++
T Consensus 4 ~~~~e~~i~a~a~kvw~~~v~d~~-~l~pk~~P~~i~s~~~~eGdgg----~Gsvr~~~~~---~---g~~~---~~~kE 69 (155)
T 2flh_A 4 EFNTQTELSVRLEALWAVLSKDFI-TVVPKVLPHIVKDVQLIEGDGG----VGTILIFNFL---P---EVSP---SYQRE 69 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHTSCT-THHHHHCTTTEEEEEEEECSSS----TTCEEEEEEC---T---TSSS---CEEEE
T ss_pred EEEEEEEecCCHHHHHHHHhcccc-cccchhccccceEEEEEcCCCC----CCeEEEEEee---C---CCCC---cEEEE
Confidence 456678899999999999777653 45566553 1122233345552 2678988875 1 2 22 24456
Q ss_pred EEEeeeCCeEEEEEeeecCC---CCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHH--
Q 008222 292 KFRVYRNSHLVIETSQEVHD---VPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECR-- 366 (573)
Q Consensus 292 ~i~~~~~~~yVVet~t~t~D---VPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~k-- 366 (573)
++..+++....+.-+..-.| -||.++ ...+.+.+.+ .++|.++ ..++|.+..=..- -.+..+
T Consensus 70 rl~~iD~~~~~~~y~iieg~~l~~~~~~~---~~~i~v~p~~---~ggs~v~--wt~~y~~~~~~~~-----~~~~~~~~ 136 (155)
T 2flh_A 70 EITEFDESSHEIGLQVIEGGYLSQGLSYY---KTTFKLSEIE---EDKTLVN--VKISYDHDSDIEE-----KVTPTKTS 136 (155)
T ss_dssp EEEEEETTTTEEEEEEEEEGGGGTTCSEE---EEEEEEEEEE---TTEEEEE--EEEEEEC------------CCHHHHH
T ss_pred EEEEEeCCCCEEEEEEEeccccccCceEE---EEEEEEEECC---CCCEEEE--EEEEEEECCCCcc-----ChhHhhhH
Confidence 77666643222222111122 366653 2334455542 3477554 4455654331111 223445
Q ss_pred HHHHHHHHHHHHHHhhc
Q 008222 367 DVYAMWIGMAHDVLKQK 383 (573)
Q Consensus 367 e~~~~~v~~l~e~lk~~ 383 (573)
+.+..+.+.+.+||.++
T Consensus 137 ~~~~~~~k~ie~yll~~ 153 (155)
T 2flh_A 137 QSTLMYLRRLERYLSNG 153 (155)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 78888899999988665
No 9
>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=90.86 E-value=3.3 Score=38.23 Aligned_cols=148 Identities=9% Similarity=0.098 Sum_probs=82.1
Q ss_pred ceEEEEeEEecCHHHHHhhhccCCchHHHHHHHH-HcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEE
Q 008222 213 YTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQ 291 (573)
Q Consensus 213 ~~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~-~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ 291 (573)
.++..+.++++|++++|.++-+|.. .+.+++. .....++.-+.|. ..|..|.++|.. |.+.. ..++
T Consensus 17 ~k~~~ev~i~apa~kvw~~~~~d~~--~lpk~~P~~i~s~~~~eGd~g---g~Gsir~~~~~~------gg~~~--~~kE 83 (166)
T 2i9y_A 17 GKLETDVEIKASADKFHHMFAGKPH--HVSKASPGNIQGCDLHEGDWG---TVGSIVFWNYVH------DGEAK--VAKE 83 (166)
T ss_dssp EEEEEEEEESSCHHHHHGGGSSCSS--CCCCSCSSCCSSCCCCSCCSC---STTCCCEEEEEE------TTEEE--EEEE
T ss_pred cEEEEEEEecCCHHHHHHHHhcccc--cccccccccceEEEEEcCCCC---CCCeEEEEEEec------CCCce--EEEE
Confidence 5677889999999999998776632 1222221 2223333345552 226789888752 33322 3456
Q ss_pred EEEeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHH
Q 008222 292 KFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAM 371 (573)
Q Consensus 292 ~i~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~ 371 (573)
++..+++....+.-+..-.|++ ..+=.....|.+.+.+ ..++|.+... ++|.+..- -+..- ..+.+.+..
T Consensus 84 rl~~iD~~~~~~~y~iieGd~~-~~~~~~~~ti~v~p~~--~g~gs~v~wt--~~ye~~~~---~~~~p--~~~~~~~~~ 153 (166)
T 2i9y_A 84 RIEAVEPDKNLITFRVIEGDLM-KEYKSFLLTIQVTPKP--GGPGSIVHWH--LEYEKISE---EVAHP--ETLLQFCVE 153 (166)
T ss_dssp EEEEEETTTTEEEEEECCTTGG-GTEEEEEEEEEEEEEE--ETTEEEEEEE--EEEEESST---TTCCT--HHHHHHHHH
T ss_pred EEEEEeccCcEEEEEEEeCCCC-CCeeEEEEEEEEEECC--CCCCcEEEEE--EEEEECCC---CCCCH--HHHHHHHHH
Confidence 7766665443444433333441 2222455666676642 1237765544 45544321 11111 456688888
Q ss_pred HHHHHHHHHhhc
Q 008222 372 WIGMAHDVLKQK 383 (573)
Q Consensus 372 ~v~~l~e~lk~~ 383 (573)
+.+.+.+||.++
T Consensus 154 ~~k~ie~~l~~~ 165 (166)
T 2i9y_A 154 VSKEIDEHLLAE 165 (166)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhhC
Confidence 899999988765
No 10
>3rws_A MTN13 protein; zeatin, cytokinin, hormone, lucerne, nodulin, NODU plant protein; HET: ZEA; 1.85A {Medicago truncatula}
Probab=90.66 E-value=6 Score=36.85 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=83.8
Q ss_pred ceEEEEeEEecCHHHHHhhhccCCchHHHHHHHH-HcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEE
Q 008222 213 YTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQ 291 (573)
Q Consensus 213 ~~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~-~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ 291 (573)
.+...+.+.++|++++|.++..|-. ..+.+.+- .-...++.-+.+ ..|..|.++|. ||- ...++
T Consensus 9 ~~~~~ei~i~apa~kvw~~~v~d~~-~l~pk~~P~~v~s~e~~eGdg----g~Gsir~~t~~-------g~~---~~~kE 73 (168)
T 3rws_A 9 ITSESEYVSSLSAEKLYRGIVEDGN-IIYPKALPRFIEKAETLEGDG----GPGTIKKLTFV-------GDF---GSTKQ 73 (168)
T ss_dssp EEEEEEEEESSCHHHHHHHHHTSHH-HHHHHHSTTTEEEEEEEESSS----STTCEEEEEES-------SSS---CEEEE
T ss_pred EEEEEEEEecCCHHHHHHHHhcCcc-ccchhhCccccceEEEeeCCC----CCCeEEEEEEc-------CCC---eEEEE
Confidence 3566788899999999998856532 33444442 122223333443 23678998886 331 13457
Q ss_pred EEEeeeCCeEEEEEeeecCCC----CCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchh--hhhhchHHHH
Q 008222 292 KFRVYRNSHLVIETSQEVHDV----PYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKG--KIVQSTLEEC 365 (573)
Q Consensus 292 ~i~~~~~~~yVVet~t~t~DV----PYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks--~IEkst~~g~ 365 (573)
++..+++....+.-+..-.|+ ||.+ ....+.+.+. +.++|.++..+ .|.+. .+ .+.-...+..
T Consensus 74 rl~~iD~~~~~~sY~iiegd~l~~~p~~~---y~~ti~v~p~---~~ggs~v~wt~--~y~~~---~~d~~~~~e~~k~~ 142 (168)
T 3rws_A 74 HIDMVDRENCAYTYSVYEGIALSDQPLEK---IVFEFKLVPT---PEEGCIVKSTT--KYYTK---GDDIELSKDYLEAG 142 (168)
T ss_dssp EEEEEETTTTEEEEEECSSCCBTTBCEEE---EEEEEEEEEC---TTSCEEEEEEE--EEEEC---SSSCCCCHHHHHHH
T ss_pred EEEEEcccCCEEEEEEEccCcccCcCceE---EEEEEEEEEC---CCCceEEEEEE--EEEEC---CCccCCCHHHHHHH
Confidence 777777554333333333444 5543 3334556664 23478755444 45432 12 1222234557
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 008222 366 RDVYAMWIGMAHDVLKQKN 384 (573)
Q Consensus 366 ke~~~~~v~~l~e~lk~~~ 384 (573)
++....+.+.+..||-+++
T Consensus 143 ~~~~~~~~k~ie~yllanp 161 (168)
T 3rws_A 143 IERFEGFTKAVESFLLANP 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhCh
Confidence 8888899999999998775
No 11
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=90.40 E-value=2 Score=41.20 Aligned_cols=146 Identities=10% Similarity=0.017 Sum_probs=76.1
Q ss_pred EEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeeccc--CCCceeeeeEEEEE
Q 008222 216 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVY--FGAKFGSCKETQKF 293 (573)
Q Consensus 216 l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p--~GPKst~c~etQ~i 293 (573)
-+..++++|++++|++++..... .+ .+.++.....-..- ++.+..+.|..+-..+ +.|..- |.. ...
T Consensus 70 k~~~~v~~~~~~v~~~l~d~~~r---~~-----Wd~~~~~~~vle~i-d~~~~I~y~~~~~~~~~~v~~RDf-v~~-r~~ 138 (224)
T 1jss_A 70 KAQGVMDDVVNNVIDHIRPGPWR---LD-----WDRLMTSLDVLEHF-EENCCVMRYTTAGQLLNIISPREF-VDF-SYT 138 (224)
T ss_dssp EEEEEESSCHHHHHHHHSSSTTH---HH-----HCSSEEEEEEEEEC-STTEEEEEEEECCBTTTTBCCEEE-EEE-EEE
T ss_pred EEEEEEeCCHHHHHHHHhCcccc---cc-----cccceeeEEEEEEc-CCCeEEEEEEcccccCCCCCCCeE-EEE-EEE
Confidence 45678899999999999765421 11 13333222111111 1223333333322111 334321 222 222
Q ss_pred EeeeCCeEEEEEeeecCCCCCCCeeEEE---EEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHH
Q 008222 294 RVYRNSHLVIETSQEVHDVPYGDYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYA 370 (573)
Q Consensus 294 ~~~~~~~yVVet~t~t~DVPYGDsF~Ve---~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~ 370 (573)
+..++..+++..++.-++.|- ++-+++ +.|+|++.+. ++++|+|...+.++..+. +=+.++.+.....+.++++
T Consensus 139 ~~~~~~~vi~~~Sv~hp~~~~-g~VR~~~~~~g~~i~p~~~-~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~ 215 (224)
T 1jss_A 139 VGYEEGLLSCGVSVEWSETRP-EFVRGYNHPCGWFCVPLKD-SPSQSLLTGYIQTDLRGM-IPQSAVDTAMASTLANFYS 215 (224)
T ss_dssp EEETTEEEEEEEECCCCCCCT-TSEECEECSEEEEEEEETT-EEEEEEEEEEECEECCSC-CCHHHHHHHHHHHHHHHHH
T ss_pred EEcCCeEEEEEeeeecCCCCC-CCEEEEecccEEEEEEcCC-CCCceEEEEEEEeCCCCC-ccHHHHHHHHHHhHHHHHH
Confidence 223343344444555566653 555555 6699999742 235899999999998763 3356666655555555555
Q ss_pred HHHHH
Q 008222 371 MWIGM 375 (573)
Q Consensus 371 ~~v~~ 375 (573)
.+-+.
T Consensus 216 ~Lr~~ 220 (224)
T 1jss_A 216 DLRKG 220 (224)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54333
No 12
>2vjg_A Major allergen DAU C 1; major carrot allergen, pathogenesis-related protein, plant defense; HET: P4C PG4 PGE; 2.70A {Daucus carota} PDB: 2wql_A* 2bk0_A
Probab=90.10 E-value=11 Score=34.40 Aligned_cols=148 Identities=14% Similarity=0.088 Sum_probs=79.9
Q ss_pred eEEEEeEEecCHHHHHhhhccCCchHHHHHHHH-HcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEE
Q 008222 214 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQK 292 (573)
Q Consensus 214 ~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~-~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~ 292 (573)
+...+.+.++|++++|.+++.|-. ..+.+.+- .-...++ -+.+ ..|..|.++|. -|.+. ...+++
T Consensus 5 ~~~~ei~i~a~a~kvw~~~v~d~~-~l~pk~~P~~v~s~e~-eGdg----~~Gsir~~~~~------~g~~~--~~~kEr 70 (154)
T 2vjg_A 5 SHSLEITSSVSAEKIFSGIVLDVD-TVIPKAATGAYKSVEV-KGDG----GAGTVRIITLP------EGSPI--TTMTVR 70 (154)
T ss_dssp EEEEEEEESSCHHHHHHHHTTTHH-HHHHHHSTTTCSEEEE-ESSS----STTCEEEEECC------TTCSC--CEEEEE
T ss_pred EEEEEEEecCCHHHHHHhhhCCcc-ccchhhccCceeEEEE-eCCC----CCceEEEEEec------CCCCc--eEEEEE
Confidence 455678899999999999877742 34344442 2222333 3432 23678988873 13322 244677
Q ss_pred EEeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHH
Q 008222 293 FRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMW 372 (573)
Q Consensus 293 i~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~ 372 (573)
+..+++....+.-+..-.|++-..+=.....+.+.+.+ .++|.++..+ .|.+.. -..+.-...+..++....+
T Consensus 71 l~~iD~~~~~~~y~iiegd~l~~~~~~~~~ti~v~p~~---~ggs~v~wt~--~y~~~~--~~~~~~~~~~~~~~~~~~~ 143 (154)
T 2vjg_A 71 TDAVNKEALSYDSTVIDGDILLGFIESIETHMVVVPTA---DGGSITKTTA--IFHTKG--DAVVPEENIKFADAQNTAL 143 (154)
T ss_dssp EEEEETTTTEEEEEEEESGGGTTTEEEEEEEEEEEECT---TSCEEEEEEE--EEEEST--TCCCCHHHHHHHHHHHHHH
T ss_pred EEEEeccCCEEEEEEEecCCCccceEEEEEEEEEEECC---CCcEEEEEEE--EEEECC--CCCCCHHHHHHHHHHHHHH
Confidence 77677543222322222333211122233445566642 3467655444 454321 1122333445567888888
Q ss_pred HHHHHHHHhh
Q 008222 373 IGMAHDVLKQ 382 (573)
Q Consensus 373 v~~l~e~lk~ 382 (573)
.+.+..||-+
T Consensus 144 ~k~ie~ylla 153 (154)
T 2vjg_A 144 FKAIEAYLIA 153 (154)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888888754
No 13
>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A
Probab=89.16 E-value=13 Score=33.98 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=82.6
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHH-cCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRK-CGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 293 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~-rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i 293 (573)
.-.+.+.++|+++||.++..|.. +++.+.+-. .+..++ -+.| ..|..|.++|.. |.+. .+.++++
T Consensus 6 ~~~E~~~~v~a~kl~ka~v~d~~-~l~Pk~~P~~iks~~v-eGdg----~~Gsir~~t~~~------g~~~--~~~kErl 71 (154)
T 2wql_A 6 HSLEITSSVSAEKIFSGIVLDVD-TVIPKAATGAYKSVEV-KGDG----GAGTVRIITLPE------GSPI--TTMTVRT 71 (154)
T ss_dssp EEEEEEESSCHHHHHHHHTTTHH-HHHHHHSTTTCSEEEE-ESSS----STTCEEEEECCT------TCSC--CEEEEEE
T ss_pred EEEEEEecCCHHHHHHHHhhccc-ccchhhcccceeEEEE-ECCC----CCCeEEEEEEcC------CCCc--eEEEEEE
Confidence 44567889999999999888753 455555431 122222 2333 236789887622 2222 2446888
Q ss_pred EeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHH
Q 008222 294 RVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWI 373 (573)
Q Consensus 294 ~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v 373 (573)
..+++....+..+..-.|+.-..+=.......+.+. +.++|.++.. +.|.+.. -..+.-...++.++....+.
T Consensus 72 e~iD~~~~~~~y~iieGd~l~~~~~~~~~~ikv~p~---~~ggsvvk~t--~~Y~~~~--~~~~~ee~~~~~~~~~~~~~ 144 (154)
T 2wql_A 72 DAVNKEALSYDSTVIDGDILLGFIESIETHMVVVPT---ADGGSITKTT--AIFHTKG--DAVVPEENIKFADAQNTALF 144 (154)
T ss_dssp EEEETTTTEEEEEEEESGGGTTTEEEEEEEEEEEEC---TTSCEEEEEE--EEEEEST--TCCCCHHHHHHHHHHHHHHH
T ss_pred EEEehhhCEEEEEEEeccccccceEEEEEEEEEeeC---CCCcEEEEEE--EEEEECC--CCCCCHHHHHHHHHHHHhHH
Confidence 878866545555444455433333334445556664 3457866554 5565532 11222333444566667777
Q ss_pred HHHHHHHhh
Q 008222 374 GMAHDVLKQ 382 (573)
Q Consensus 374 ~~l~e~lk~ 382 (573)
+.+..||-+
T Consensus 145 KaiEayLla 153 (154)
T 2wql_A 145 KAIEAYLIA 153 (154)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888754
No 14
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=87.84 E-value=14 Score=32.63 Aligned_cols=142 Identities=12% Similarity=0.128 Sum_probs=72.9
Q ss_pred eEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEE
Q 008222 214 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 293 (573)
Q Consensus 214 ~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i 293 (573)
++-.+.++++|++++|+++- |- .-+.+++- +...+.. ...+. |..-+...+||-.......-++
T Consensus 4 ~i~~~~~i~ap~e~Vw~~l~-D~--e~~~~w~p--~~~~~~~-----~~~~~------~~~~~~~~~g~~~~~~~~~~~~ 67 (162)
T 2pcs_A 4 NGNGSIELKGTVEEVWSKLM-DP--SILSKCIM--GCKSLEL-----IGEDK------YKADLQIGIAAVKGKYDAIIEV 67 (162)
T ss_dssp EEEEEEEEESCHHHHHHHHT-CH--HHHHHHST--TEEEEEE-----EETTE------EEEEEEECCGGGCEEEEEEEEE
T ss_pred EEeeEEEecCCHHHHHHHhc-CH--HHHHhhCC--CceEeEE-----eCCCe------EEEEEEEEeeeEEEEEEEEEEE
Confidence 45567889999999999774 32 34555442 2222211 11111 1112222234422222222222
Q ss_pred E-eeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccc--cchhhhhhchHHHHHHHHH
Q 008222 294 R-VYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT--VWKGKIVQSTLEECRDVYA 370 (573)
Q Consensus 294 ~-~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT--~~Ks~IEkst~~g~ke~~~ 370 (573)
. ..+...+++.-...- + +..+.....|.++.. ..++|+|.+...+.+.+.- +...++.+- .+....
T Consensus 68 ~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~l~~~---~~~gT~v~~~~~~~~~g~l~~~~~~l~~~~----~~~~~~ 136 (162)
T 2pcs_A 68 TDIKPPYHYKLLVNGEG-G---PGFVNAEGVIDLTPI---NDECTQLTYTYSAEVGGKVAAIGQRMLGGV----AKLLIS 136 (162)
T ss_dssp EEEETTTEEEEEEEEEE-T---TEEEEEEEEEEEEES---SSSEEEEEEEEEEEEESGGGGGCHHHHHHH----HHHHHH
T ss_pred EecCCCcEEEEEEEecC-C---CccEEEEEEEEEEec---CCCcEEEEEEEEEEECCCHHHhhHHHHHHH----HHHHHH
Confidence 2 223455665543221 1 334457888999874 2458999999999886531 333344333 234445
Q ss_pred HHHHHHHHHHhh
Q 008222 371 MWIGMAHDVLKQ 382 (573)
Q Consensus 371 ~~v~~l~e~lk~ 382 (573)
.+++.+++.+..
T Consensus 137 ~~~~~lk~~~e~ 148 (162)
T 2pcs_A 137 DFFKKIQKEIAK 148 (162)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 556666666654
No 15
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=87.06 E-value=12 Score=35.54 Aligned_cols=79 Identities=11% Similarity=-0.039 Sum_probs=49.9
Q ss_pred eCCeEE-EEEeeecCCCCCC-CeeEEE---EEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHH
Q 008222 297 RNSHLV-IETSQEVHDVPYG-DYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAM 371 (573)
Q Consensus 297 ~~~~yV-Vet~t~t~DVPYG-DsF~Ve---~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~ 371 (573)
+++.|+ +..++..+++|-. ++-+++ ..|+|.+.+. .+++|++.....++..++ +=+.++.+.+..++..+++.
T Consensus 144 ~~g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~-~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~ 221 (231)
T 2r55_A 144 EDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPG-EPTKTNLVTFFHTDLSGY-LPQNVVDSFFPRSMTRFYAN 221 (231)
T ss_dssp TTSCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC---CCCEEEEEEECEECCSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCC-CCCcEEEEEEEEeCCCCC-ccHHHHHHHHhHhHHHHHHH
Confidence 344454 5666767777754 444444 4589988632 256999999999998764 33666666666666655555
Q ss_pred HHHHHH
Q 008222 372 WIGMAH 377 (573)
Q Consensus 372 ~v~~l~ 377 (573)
+-+.++
T Consensus 222 Lr~~~~ 227 (231)
T 2r55_A 222 LQKAVK 227 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 16
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=86.72 E-value=12 Score=34.27 Aligned_cols=143 Identities=8% Similarity=0.065 Sum_probs=75.4
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeeccc--CCCceeeeeEEEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVY--FGAKFGSCKETQK 292 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p--~GPKst~c~etQ~ 292 (573)
.-.+.++++|++++|+++..-+ ...++...+....+. .. +++ ...+ |. -++.| +.+.. -|.. ..
T Consensus 29 ~k~~~~v~~s~~~v~~~l~D~~---~~~~W~~~~~~~~vl----e~--~~~-~~i~-y~-~~~~p~p~~~RD-~v~~-~~ 94 (189)
T 3qsz_A 29 FRGEVRLKAAADDVVKVLRDAN---AFRQWMPDVAASELL----KA--TDT-EQYH-YL-DNSAPWPVSNRD-GVYH-FT 94 (189)
T ss_dssp EEEEEEESSCHHHHHHHHHCGG---GGGGTSTTEEEEEEE----EE--CSS-EEEE-EE-EECCSSSCCCEE-EEEE-EE
T ss_pred EEEEEEEECCHHHHHHHHHhHH---HhhhHHHhcCEEEEE----ee--cCC-ceEE-EE-EeecCCCcCCcc-eEEE-EE
Confidence 4567888999999999765432 222222111111111 11 112 2222 32 22333 22321 1222 22
Q ss_pred EEeeeCCeEEEEEeeecCCCCCCCee----EEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHH
Q 008222 293 FRVYRNSHLVIETSQEVHDVPYGDYF----RVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDV 368 (573)
Q Consensus 293 i~~~~~~~yVVet~t~t~DVPYGDsF----~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~ 368 (573)
.....++.+++......+.+|=...| .....|+|++ + +++|++.....++..+ .+-+.++.+.+...+-.+
T Consensus 95 ~~~~~~g~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~---~~~t~vt~~~~~dp~G-~iP~~lvn~~~~~~~~~~ 169 (189)
T 3qsz_A 95 YEKAGDGAITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-D---ADGVDVTYQMHASPGG-SIPSWLANQTVVETPFGT 169 (189)
T ss_dssp EEECTTSCEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-C---SSSEEEEEEEEECSCS-SSCHHHHHHTTTHHHHHH
T ss_pred EEECCCCeEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-C---CCeEEEEEEEEeCCCC-CCCHHHHHHHHHHHHHHH
Confidence 22222345555555444566643332 3458899998 4 4589999999999864 455666766666666666
Q ss_pred HHHHHHHH
Q 008222 369 YAMWIGMA 376 (573)
Q Consensus 369 ~~~~v~~l 376 (573)
++.|-+.+
T Consensus 170 l~~L~k~~ 177 (189)
T 3qsz_A 170 LKALRSHL 177 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655554
No 17
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=85.14 E-value=11 Score=35.20 Aligned_cols=145 Identities=6% Similarity=-0.022 Sum_probs=76.2
Q ss_pred EEEEeEEe-cCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEE
Q 008222 215 KVAETNFQ-MKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 293 (573)
Q Consensus 215 ~l~e~~fp-isv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i 293 (573)
.-...+++ ++++++|+++... ....++...+....+. .. + + ...+.+......|+.|.. -|... ..
T Consensus 54 ~k~~~~i~~~~~~~v~~~l~d~---~~r~~Wd~~~~~~~vl----e~--~-~-~~i~~~~~~~p~p~~~RD-~v~~~-~~ 120 (214)
T 1ln1_A 54 YKVFGVLEDCSPTLLADIYMDS---DYRKQWDQYVKELYEQ----EC--N-G-ETVVYWEVKYPFPMSNRD-YVYLR-QR 120 (214)
T ss_dssp EEEEEEETTSCHHHHHHHHHCH---HHHHHHCTTEEEEEEE----EE--T-T-EEEEEEEECCCTTSCCEE-EEEEE-EE
T ss_pred EEEEEEECCCCHHHHHHHHcCH---HHHHHHHHHHhhEEEe----cc--C-C-CEEEEEEEEcCCCCCCce-EEEEE-EE
Confidence 45678895 9999999987643 2333333222222221 11 2 2 223333322223343322 22222 22
Q ss_pred Eeee-CC--eE-EEEEeeecCCCCCCCee----EEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHH
Q 008222 294 RVYR-NS--HL-VIETSQEVHDVPYGDYF----RVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEEC 365 (573)
Q Consensus 294 ~~~~-~~--~y-VVet~t~t~DVPYGDsF----~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ 365 (573)
..++ ++ .| ++..++.-+++|-...| .....|+|++. ++++|++.....++..+ .+=+.++.+.+..++
T Consensus 121 ~~~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~---~~~~t~v~~~~~~Dp~G-~iP~~l~n~~~~~~~ 196 (214)
T 1ln1_A 121 RDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESD---GKKGSKVFMYYFDNPGG-QIPSWLINWAAKNGV 196 (214)
T ss_dssp EEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEEC---SSSSEEEEEEEEECCSS-CCCHHHHHHHHHTHH
T ss_pred EecccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecC---CCCceEEEEEEEECCCC-cccHHHHHHHHHHHh
Confidence 2232 32 34 45666667788864443 25677999986 35689999999999865 333445544444455
Q ss_pred HHHHHHHHHHH
Q 008222 366 RDVYAMWIGMA 376 (573)
Q Consensus 366 ke~~~~~v~~l 376 (573)
..+++.+-+.+
T Consensus 197 ~~~l~~l~k~~ 207 (214)
T 1ln1_A 197 PNFLKDMARAC 207 (214)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544444
No 18
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=84.98 E-value=18 Score=31.31 Aligned_cols=139 Identities=12% Similarity=0.090 Sum_probs=71.6
Q ss_pred eEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEE
Q 008222 214 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 293 (573)
Q Consensus 214 ~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i 293 (573)
+.-.+.++++|++++|+++- |- ..+.+++. +.. .+. .. ++. +.+. +...+||-......+-++
T Consensus 14 ~i~~~~~i~ap~e~Vw~~l~-D~--~~~~~w~p--~~~-----~~~-~~-~~~---~~~~--~~~~~g~~~~~~~~~~~~ 76 (157)
T 2ns9_A 14 RYEGSFEVSKTPEEVFEFLT-DP--KRFSRAFP--GFK-----SVE-VE-DGS---FTIE--LRLSLGPLRGDARVRASF 76 (157)
T ss_dssp EEEEEEEESSCHHHHHHHHT-CH--HHHGGGST--TEE-----EEE-EE-TTE---EEEE--EEEESSSSEEEEEEEEEE
T ss_pred EEeeEEEEcCCHHHHHHHHc-CH--HHHHhhCC--Cce-----EEE-EC-CCE---EEEE--EEEEEcceeEEEEEEEEE
Confidence 56677889999999999664 32 23333332 111 121 11 221 2233 223345532222222233
Q ss_pred Eee-eCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEccc--ccchhhhhhchHHHHHHHHH
Q 008222 294 RVY-RNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK--TVWKGKIVQSTLEECRDVYA 370 (573)
Q Consensus 294 ~~~-~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~Ks--T~~Ks~IEkst~~g~ke~~~ 370 (573)
... ++..+++..... + .+.-|.....|.++.. + ++|+|.....+++.+. .+.+.++.+-+ +..+.
T Consensus 77 ~~~~~~~~i~~~~~~~--~--~~~~~~~~~~~~l~~~---~-~gT~v~~~~~~~~~g~l~~~~~~~~~~~~----~~~~~ 144 (157)
T 2ns9_A 77 EDLEKPSKATVKGSGR--G--AGSTLDFTLRFAVEPS---G-GGSRVSWVFEGNVGGLAASMGGRVLDSLA----RRMIN 144 (157)
T ss_dssp EEEETTTEEEEEEEEE--C--SSEEEEEEEEEEEEEE---T-TEEEEEEEEEEEEEEGGGGSCHHHHHHHH----HHHHH
T ss_pred EecCCCcEEEEEEEec--C--CCccEEEEEEEEEEeC---C-CcEEEEEEEEEEECcCHHHhhHHHHHHHH----HHHHH
Confidence 222 345555543221 1 1234677789999886 3 5899999999888652 23334443332 33455
Q ss_pred HHHHHHHHHHh
Q 008222 371 MWIGMAHDVLK 381 (573)
Q Consensus 371 ~~v~~l~e~lk 381 (573)
.+++-+++.++
T Consensus 145 ~~~~~lk~~~e 155 (157)
T 2ns9_A 145 DVISGVKRELG 155 (157)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 19
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*
Probab=84.75 E-value=12 Score=35.93 Aligned_cols=149 Identities=12% Similarity=0.115 Sum_probs=81.9
Q ss_pred ceEEEEeEEecCHHHHHhhhcc-CCchHHHHHHHHH-cCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEE
Q 008222 213 YTKVAETNFQMKVEDFYSLFFS-DDTVNFIESFHRK-CGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKET 290 (573)
Q Consensus 213 ~~~l~e~~fpisv~~lF~lLF~-D~s~~Fl~~f~~~-rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~et 290 (573)
+....+.++++|++++|.++.+ |-. .++.+++-. -...++. +.|. .|..|.++|. . |+.. ...+
T Consensus 29 g~~~~eveI~apa~kvW~~~v~~df~-~l~pk~~P~~i~s~e~~-GdGg----~GsIR~lt~~---~---G~~~--~~vk 94 (201)
T 2vq5_A 29 KVIHHELEVAASADDIWTVYSWPGLA-KHLPDLLPGAFEKLEII-GDGG----VGTILDMTFV---P---GEFP--HEYK 94 (201)
T ss_dssp EEEEEEEEESSCHHHHHHHHTCGGGG-GGHHHHSTTSCSEEEEE-SSSS----TTCEEEEECC---T---TCSS--CEEE
T ss_pred eEEEEEEEecCCHHHHHhhhhcCCcc-cchhhhCcccceEEEEe-cCCC----CCeEEEEEec---C---CCcc--cEEE
Confidence 3556778889999999998766 432 455555532 2333555 7763 2678988875 1 3221 2445
Q ss_pred EEEEeeeCCeEEEEEeeecC---CCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccc-hhhhhhchHHHHH
Q 008222 291 QKFRVYRNSHLVIETSQEVH---DVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVW-KGKIVQSTLEECR 366 (573)
Q Consensus 291 Q~i~~~~~~~yVVet~t~t~---DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~-Ks~IEkst~~g~k 366 (573)
+++..+++....+.-+..-. +.||.+ |.... -+.+.+ .++|.++ ..++|.+..-. ... +.. ..+
T Consensus 95 Erle~iDde~~~~sYsiieGd~l~~~~~~-y~~ti--kv~p~~---dggs~vk--Wt~~ye~~~~~~~~~-e~~---~~~ 162 (201)
T 2vq5_A 95 EKFILVDNEHRLKKVQMIEGGYLDLGVTY-YMDTI--HVVPTG---KDSCVIK--SSTEYHVKPEFVKIV-EPL---ITT 162 (201)
T ss_dssp EEEEEEETTTTEEEEEEEEEGGGGTTEEE-EEEEE--EEEEEE---TTEEEEE--EEEEEEECGGGHHHH-TTT---CCS
T ss_pred EEEEEEchhhCEEEEEEEecCccccceeE-EEEEE--EEEECC---CCCeEEE--EEEEEEECCCCCCCC-hhH---HHH
Confidence 77776775432222222212 234543 33333 334432 3477644 44455543211 111 111 346
Q ss_pred HHHHHHHHHHHHHHhhcccCC
Q 008222 367 DVYAMWIGMAHDVLKQKNLEK 387 (573)
Q Consensus 367 e~~~~~v~~l~e~lk~~~~k~ 387 (573)
+.+..+.+.+.+||.+++.|.
T Consensus 163 ~~~~~~~KaiE~yLlanp~~~ 183 (201)
T 2vq5_A 163 GPLAAMADAISKLVLEHKSKS 183 (201)
T ss_dssp HHHHHHHHHHHHHHHSCCCC-
T ss_pred HHHHHHHHHHHHHHHhCcccc
Confidence 788888999999998887443
No 20
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=84.05 E-value=6.7 Score=38.15 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=47.1
Q ss_pred CeEEEEEeeecCCCCCCCeeE---EEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHHHH
Q 008222 299 SHLVIETSQEVHDVPYGDYFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGM 375 (573)
Q Consensus 299 ~~yVVet~t~t~DVPYGDsF~---Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v~~ 375 (573)
..+++..++.-+++|-.++=+ ..+.|+|++. ++++|+|...+.++..++. =+. +.+... ...-..+..
T Consensus 150 ~~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~---~~~~t~vt~~~~~Dp~G~i-P~~-ln~~~~----~~~~~~l~~ 220 (237)
T 2pso_A 150 MCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPC---GSGKSRLTHICRIDLKGHS-PEW-YSKGFG----HLCAAEVAR 220 (237)
T ss_dssp CEEEEEEECCCTTCCCCSSEECCEEEEEEEEEEC---STTCEEEEEEEEECCSSSC-TTT-TTTHHH----HHHHHHHHH
T ss_pred EEEEEEEcccCCCCCCCCcEEEEEeccEEEEEEC---CCCCEEEEEEEEeCCCCCc-hHH-HHHHHH----HHHHHHHHH
Confidence 344455566667888663322 4589999987 3568999999999987642 122 222222 222335666
Q ss_pred HHHHHhhcccCCC
Q 008222 376 AHDVLKQKNLEKP 388 (573)
Q Consensus 376 l~e~lk~~~~k~~ 388 (573)
+++.+++...+++
T Consensus 221 LR~~~~~~~~~~~ 233 (237)
T 2pso_A 221 IRNSFQPLIAEGP 233 (237)
T ss_dssp HHHTTSCC-----
T ss_pred HHHHHHhhcCCCC
Confidence 7777766654444
No 21
>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0
Probab=80.50 E-value=36 Score=31.42 Aligned_cols=148 Identities=11% Similarity=0.086 Sum_probs=80.7
Q ss_pred ceEEEEeEEecCHHHHHhhhccCCchHHHHHHHH-HcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEE
Q 008222 213 YTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHR-KCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQ 291 (573)
Q Consensus 213 ~~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~-~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ 291 (573)
.+...+.+.++|++++|.+|..|-. ..+.+.+. .-...++.-+.. ..|..|.++|. . |.+. ...++
T Consensus 10 ~~~~~ev~i~a~a~kvw~~~v~d~~-~l~pk~~P~~v~s~e~~eGdg----~~Gsir~~~~~---~---g~~~--~~~kE 76 (165)
T 3ie5_A 10 YTIVKEEESPIAPHRLFKALVLERH-QVLVKAQPHVFKSGEIIEGDG----GVGTVTKITFV---D---GHPL--TYMLH 76 (165)
T ss_dssp EEEEEEEEESSCHHHHHHHHTTTHH-HHHHHHCTTTEEEEEEEESSS----STTCEEEEEEC---T---TSSC--CEEEE
T ss_pred EEEEEEEEecCCHHHHHHHhcCCcc-ccchhhCCcccceEEEecCCC----CCCeEEEEEec---C---CCCC--ceEEE
Confidence 4677788999999999998766532 33344442 112222223321 23678998883 1 3222 24567
Q ss_pred EEEeeeCCeEEEEEeeecCCC---CCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHH
Q 008222 292 KFRVYRNSHLVIETSQEVHDV---PYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDV 368 (573)
Q Consensus 292 ~i~~~~~~~yVVet~t~t~DV---PYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~ 368 (573)
++..+++....+.-+..-.|+ +|. +|....+.. .. .++|.++..+ +|.+.. -..+.-...+..++.
T Consensus 77 rl~~iD~~~~~~~Y~iieG~~l~~~~~-~y~~~i~v~-~~-----~ggs~vkwt~--~y~~~~--~~~~~~e~~k~~~~~ 145 (165)
T 3ie5_A 77 KFDEIDAANFYCKYTLFEGDVLRDNIE-KVVYEVKLE-AV-----GGGSKGKITV--TYHPKP--GCTVNEEEVKIGEKK 145 (165)
T ss_dssp EEEEEEGGGTEEEEEEEEEGGGTTTEE-EEEEEEEEE-EE-----TTEEEEEEEE--EEEECT--TCCCCHHHHHHHHHH
T ss_pred EEEEEchhcCEEEEEEecCCCCccceE-EEEEEEEEE-eC-----CCceEEEEEE--EEEECC--CCCCCHHHHHHHHHH
Confidence 777676543222222222232 243 444444444 22 3478755444 444311 112233344556788
Q ss_pred HHHHHHHHHHHHhhcc
Q 008222 369 YAMWIGMAHDVLKQKN 384 (573)
Q Consensus 369 ~~~~v~~l~e~lk~~~ 384 (573)
...+.+.+..||-+++
T Consensus 146 ~~~~~K~ie~yllanp 161 (165)
T 3ie5_A 146 AYEFYKQVEEYLAANP 161 (165)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCh
Confidence 8889999999998775
No 22
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=78.67 E-value=2.8 Score=32.62 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=33.4
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008222 526 ESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQL 563 (573)
Q Consensus 526 ~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~ 563 (573)
+-+.=||.++..|..|-....+.++.|+.|.++||.+|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566899999999999999999999999999999876
No 23
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.63 E-value=2.7 Score=33.19 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=33.7
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 565 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~ 565 (573)
+.=|+.++..|+.|-...+++++.|+.|..|||.-|.+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45588999999999999999999999999999987754
No 24
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=77.23 E-value=40 Score=30.15 Aligned_cols=144 Identities=10% Similarity=0.075 Sum_probs=74.1
Q ss_pred EEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEEEee
Q 008222 217 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVY 296 (573)
Q Consensus 217 ~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i~~~ 296 (573)
-..+++.|++++|+++- |= .-|..++ . ...||...+++ .. ..... ...+|++..+-.-+-++...
T Consensus 11 ~s~~I~ap~e~v~~lv~-Dv--e~w~~~y-----p--~~~p~~~~~~~-~~---~~~~a-~l~vg~~~~~~~~~s~~~~~ 75 (161)
T 3p9v_A 11 RDLEIPASYDEVFDLLA-DV--PKSASHF-----P--KVDKLVDLGNN-AY---RWEME-KVGVDKHAIQSVYACTYHAD 75 (161)
T ss_dssp EEEEESSCHHHHHHHHT-CH--HHHHTTS-----T--TEEEEEEEETT-EE---EEEEC-CBSSGGGCBCCEEEEEEEEE
T ss_pred EEEEEcCCHHHHHHHHh-Ch--hhhHhhC-----C--CeEEEEEcCCC-ce---EEEEE-EEeeeeEEEEEEEEEEEEEc
Confidence 45678999999999763 31 1122111 1 24566544333 11 12220 22245543211222222233
Q ss_pred e-CCeEEEEEeeecCCCCCCCe-eEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHHHH
Q 008222 297 R-NSHLVIETSQEVHDVPYGDY-FRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIG 374 (573)
Q Consensus 297 ~-~~~yVVet~t~t~DVPYGDs-F~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~v~ 374 (573)
+ +.....+.. + |+- =....+|.+++.+ .++|+|......+|.. .+.+++++-.-.-..+.++.+++
T Consensus 76 ~~~~~I~~~~~----~---g~~~~~l~g~w~f~p~~---~g~t~V~~~~~~e~~~--pl~~ll~~~~~~~~~~~~~~~v~ 143 (161)
T 3p9v_A 76 KEAGKITWSPI----K---GEGNGVVSGSWTLSAKG---DNATAVKFQTSAELTV--PLPSLLKLAISPVIKHEFNSLVD 143 (161)
T ss_dssp TTTTEEEEEEC----T---TSTTEEEEEEEEEEESS---SSCEEEEEEEEEEEEE--CSCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEe----c---CccceeEEEEEEEEECC---CCeEEEEEEEEEEEcC--cchHHHHHHHHHHHHHHHHHHHH
Confidence 3 333223221 2 443 2567899999863 4579999998888852 23344444444445566666666
Q ss_pred HHHHHHhhcccCC
Q 008222 375 MAHDVLKQKNLEK 387 (573)
Q Consensus 375 ~l~e~lk~~~~k~ 387 (573)
...+-+++..++.
T Consensus 144 af~~ra~~~~~~~ 156 (161)
T 3p9v_A 144 TYMANLKKAFLEH 156 (161)
T ss_dssp HHHHHHHTTTSSS
T ss_pred HHHHHHHHHHHhh
Confidence 6666666655543
No 25
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=75.01 E-value=15 Score=35.58 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=47.2
Q ss_pred eEEEEEeeecCCCCCCCee-EEE------EEEEEEecCCC-----CCCceEEEEEEEEEEcccccchhhhhhchHHHHHH
Q 008222 300 HLVIETSQEVHDVPYGDYF-RVE------GLWDVMRDDGG-----SKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRD 367 (573)
Q Consensus 300 ~yVVet~t~t~DVPYGDsF-~Ve------~R~~It~~~~~-----s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke 367 (573)
.+++..+..-+++|=..-| +++ +.|.+.....+ ++++|++.....++..+ .+=+.++.+.+..++-.
T Consensus 157 ~~i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~iP~~lvn~~~~~~~~~ 235 (255)
T 2e3n_A 157 WIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WAPASVLRAVAKREYPK 235 (255)
T ss_dssp EEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CCCHHHHHHHHHHHHHH
T ss_pred EEEEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-ccCHHHHHHHHhccccH
Confidence 3556667777778876544 222 12233321000 23589999999999865 33355555555666666
Q ss_pred HHHHHHHHHHHHHhhc
Q 008222 368 VYAMWIGMAHDVLKQK 383 (573)
Q Consensus 368 ~~~~~v~~l~e~lk~~ 383 (573)
+++.+-+.+++..+.+
T Consensus 236 ~l~~L~k~v~~~~~~~ 251 (255)
T 2e3n_A 236 FLKRFTSYVQEKTAGK 251 (255)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhccCC
Confidence 6666666665544433
No 26
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A
Probab=74.91 E-value=45 Score=29.57 Aligned_cols=134 Identities=8% Similarity=0.081 Sum_probs=70.8
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR 294 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i~ 294 (573)
+-.+.++++|++++|.++ +|-. . +.++.-. +....+. .||..|.++| . =|. ..++++.
T Consensus 4 v~~si~I~Ap~~~VW~~l-~d~~-~-~~~w~p~-----v~~~~~~---~GG~vR~~~~----~--~G~-----~~~Erl~ 61 (146)
T 3f08_A 4 TTTSMEIFGSTEQVWQLI-GGFN-S-LPDWLPY-----IPSSKLT---EGGRVRHLAN----P--DGE-----TIIERLE 61 (146)
T ss_dssp EEEEEEESSCHHHHHHHH-CSTT-C-HHHHCTT-----CCEEEEE---GGGTEEEEEC----T--TSC-----EEEEEEE
T ss_pred EEEEEEEeCCHHHHHHHH-hccc-c-HHHhCCC-----eEEEEEe---CCCeEEEEEe----C--CCC-----EEEEEEE
Confidence 445678999999999964 5432 2 2333321 1112222 1377887654 1 131 3456666
Q ss_pred eeeCC--eEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHH
Q 008222 295 VYRNS--HLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMW 372 (573)
Q Consensus 295 ~~~~~--~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~ 372 (573)
.++.. .|.... .-.+.|+.+ ....|.+.+.. ++++|++.-.+.+. + .+.-+..+...++..|+.-
T Consensus 62 ~~D~~~~~~~y~i--v~g~~~~~~---~~~~~~v~p~~--~~~gt~v~w~~~~~----p--~g~~~~~~~~~~~~~~~~~ 128 (146)
T 3f08_A 62 VFNDKERYYTYSI--MNAPFPVTN---YLSTIQVKEGT--ESNTSLVEWSGTFT----P--VAVSDEEAINLVHGIYSDG 128 (146)
T ss_dssp EEETTTTEEEEEE--EECSSSEEE---EEEEEEEEECS--STTCEEEEEEEEEE----E--SSSCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCEEEEEE--ecCCCceeE---EEEEEEEEEec--CCCcEEEEEEEEEE----e--CCCCHHHHHHHHHHHHHHH
Confidence 66642 222221 113567533 34467777721 24589888777765 2 2333334455556666666
Q ss_pred HHHHHHHHhhc
Q 008222 373 IGMAHDVLKQK 383 (573)
Q Consensus 373 v~~l~e~lk~~ 383 (573)
++.+++.++..
T Consensus 129 L~~Lk~~~e~~ 139 (146)
T 3f08_A 129 LKALQHAFLDL 139 (146)
T ss_dssp HHHHHHHTTC-
T ss_pred HHHHHHHHhhh
Confidence 66666655543
No 27
>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*
Probab=74.27 E-value=60 Score=30.68 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=77.4
Q ss_pred ccceEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccC-CCCceEEEEEEeeecccCCCceeeeeE
Q 008222 211 ECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHY-EFGYSRDLSFQHPIKVYFGAKFGSCKE 289 (573)
Q Consensus 211 ~~~~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~-~~~~tR~vsYt~PL~~p~GPKst~c~e 289 (573)
......+..++++|++++|.++-.-+.+ +.+.. .|........+ ..|..|.++|. . |.+. ...
T Consensus 33 ~~~~~~~~~~I~Apa~~vW~lv~df~~~---~~w~p-----~I~s~e~~eGdg~vGsVR~~t~~---~---G~p~--~~v 96 (190)
T 3kl1_A 33 TTCTSLITQRIHAPASVVWPLIRRFDNP---ERYKH-----FVKRCRLISGDGDVGSVREVTVI---S---GLPA--STS 96 (190)
T ss_dssp TEEEEEEEEEESSCHHHHHHHHHCTTCG---GGTCS-----SEEEEEEEESSSSTTCEEEEEEC---S---SSSC--EEE
T ss_pred CceeEEEEEEecCCHHHHHHHHhCCCCh---hHccc-----ccCEEEEEcCCCCCCeEEEEEec---C---CCcc--ceE
Confidence 4456677789999999999975432221 11111 11111111111 12688998884 1 3222 234
Q ss_pred EEEEEeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHH
Q 008222 290 TQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVY 369 (573)
Q Consensus 290 tQ~i~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~ 369 (573)
++++..+++....+.-+..-.++|..+|-.+..-.-+...+ .+.++|.+.-++...- -.+.=+..+..-+...|
T Consensus 97 kErL~~iD~~~~~~sY~iieG~~~~~~Y~s~~~v~~~~~~~-~~~~gt~V~Ws~~f~~-----p~g~~~e~~~~~~~~~~ 170 (190)
T 3kl1_A 97 TERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQD-SGKVYTVVLESYTVDI-----PEGNTEEDTKMFVDTVV 170 (190)
T ss_dssp EEEEEEEETTTTEEEEEEEEESSSCCSCEEEEEEEEEEC-C-CCCEEEEEEEEEEEEC-----CTTCCHHHHHHHHHHHH
T ss_pred EEEEEEEeccCCEEEEEEEecCCccccEEEEEEEEeccccc-CCCCcEEEEEEEEEEc-----CCCCCHHHHHHHHHHHH
Confidence 56777777553233333333578888887776655554311 1245777766665531 12222223333345555
Q ss_pred HHHHHHHHHHHhh
Q 008222 370 AMWIGMAHDVLKQ 382 (573)
Q Consensus 370 ~~~v~~l~e~lk~ 382 (573)
+..++.|++.++.
T Consensus 171 ~~gL~~L~~~~e~ 183 (190)
T 3kl1_A 171 KLNLQKLGVAATS 183 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 5555666555544
No 28
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=64.73 E-value=7.7 Score=32.77 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=39.7
Q ss_pred CCCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008222 523 RSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 565 (573)
Q Consensus 523 ~~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~ 565 (573)
--.++++-|++|+..+.+++.-.|.+++.++.++.-||.+|..
T Consensus 62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999998864
No 29
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=64.24 E-value=9 Score=32.80 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=40.6
Q ss_pred CCCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008222 523 RSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 566 (573)
Q Consensus 523 ~~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~ 566 (573)
--.+++.-|++|+..+.+++.-.|.+++.++.++.-||.+|..+
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999998764
No 30
>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}
Probab=60.70 E-value=53 Score=29.17 Aligned_cols=147 Identities=7% Similarity=0.006 Sum_probs=69.3
Q ss_pred ceEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEecccccc-CCCCceEEEEEEeeecccCCCceeeeeEEE
Q 008222 213 YTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRH-YEFGYSRDLSFQHPIKVYFGAKFGSCKETQ 291 (573)
Q Consensus 213 ~~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~-~~~~~tR~vsYt~PL~~p~GPKst~c~etQ 291 (573)
..+.++..|++|++++|+++-..+ .+..+. +...+........ ..|+. +.|.. ..|-|. .+ ..-
T Consensus 8 ~~i~~~~~i~Ap~e~Vw~a~tdpe---~~~~W~---~p~~~~~~~~~~d~~~Gg~---~~~~~--~~~~G~---~~-~~g 72 (164)
T 2l9p_A 8 NKIIFTRTFSAPINKVFDAYTKRE---LFEQWF---HPQDASVTVYDFNATKGGS---AFYAI--QAPQMI---SY-TIA 72 (164)
T ss_dssp SEEEECCEESSCHHHHHHHHHCHH---HHTTTC---CCTTCEEEEEECCCSTTEE---EEEEE--EETTEE---EE-EEE
T ss_pred ceEEEEEEeCCCHHHHHHHhCCHH---HHHhcc---CCCCceeeEEEEeccCCCE---EEEEE--ECCCCC---EE-EEE
Confidence 467888999999999999775432 333222 1111111111001 12332 23322 122122 12 222
Q ss_pred EEEee-eCCeEEEEEeeec-CCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHH
Q 008222 292 KFRVY-RNSHLVIETSQEV-HDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVY 369 (573)
Q Consensus 292 ~i~~~-~~~~yVVet~t~t-~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~ 369 (573)
++.-+ ++..++..-.... .+.|-++-......|.|+.. .++|+|.+... |.........++. ++.+-+
T Consensus 73 ~v~e~~p~~rl~~t~~~~~~~g~p~~~~~~~~v~~~l~~~----~~gT~l~~~~~--~~~~~~~~~~~~~----~~~~Gw 142 (164)
T 2l9p_A 73 EYLQVDAPYYIEYLDYFATSKGEKDTSMPGMHITLNFEEV----KGKTTVTSTST--FPTESAAQQAIDM----GVETGM 142 (164)
T ss_dssp EESCCBTTTEEEEEEEEEBTTBSCCSSSCCEEEEEEECCC----SSSEEEEEEEE--CSSTTHHHHHHHH----THHHHH
T ss_pred EEEEEcCCCEEEEEEEecCCCCCccCCCCceEEEEEEEEC----CCCEEEEEEEE--cCCHHHHHHHHHh----hHHHHH
Confidence 33333 3555655543322 12443221225567777664 34899888754 5321111222222 455556
Q ss_pred HHHHHHHHHHHhhcc
Q 008222 370 AMWIGMAHDVLKQKN 384 (573)
Q Consensus 370 ~~~v~~l~e~lk~~~ 384 (573)
...++.++++|+...
T Consensus 143 ~~~L~~L~~~le~~~ 157 (164)
T 2l9p_A 143 NSTLNQLEKLLNQKL 157 (164)
T ss_dssp HHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhh
Confidence 666666777776554
No 31
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=60.50 E-value=7.2 Score=31.96 Aligned_cols=34 Identities=12% Similarity=0.353 Sum_probs=27.4
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 534 RMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 534 r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
-|..|.++....++.++.|++|...|+++|..|+
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556777777778888999999999999988764
No 32
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=57.57 E-value=10 Score=31.16 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=27.7
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008222 534 RMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 566 (573)
Q Consensus 534 r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~ 566 (573)
=|+.|.++-...++.++++|.|...|+.+|+.|
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 366788888888889999999999999998754
No 33
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=56.30 E-value=9.1 Score=34.34 Aligned_cols=36 Identities=33% Similarity=0.561 Sum_probs=28.5
Q ss_pred EEEeccceeEEEEeccccc-----cCceEEEEeCCcEEEEE
Q 008222 52 KIIPFYEVTAVRRAKTAGI-----FPNAIEIFAAGKKYFFA 87 (573)
Q Consensus 52 ~~Ip~~dI~~I~K~~ta~i-----~pNaI~I~t~~~k~~F~ 87 (573)
..||+.||..++-..+..+ .||..+|.|.+-.|+-.
T Consensus 49 keIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T~~~~yyVg 89 (125)
T 2coa_A 49 KEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTANATYFVG 89 (125)
T ss_dssp EEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSSCCCCEE
T ss_pred eeeehhHeecccccccccccCCCCCCceEEEEeCCeEEEEc
Confidence 7899999999999865443 57889999977666643
No 34
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=56.16 E-value=16 Score=32.19 Aligned_cols=44 Identities=9% Similarity=0.115 Sum_probs=35.4
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
-.||++.|++|+..|.+-+.-.+..++++|..+..+...|..+-
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999988888888888888877777777776553
No 35
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=55.18 E-value=14 Score=30.43 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=30.6
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
+|++|+-|..|-+.+.--...|.+|++...+|+.+|+.++
T Consensus 23 lAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 23 LSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677777778888888888889999999999998888776
No 36
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=55.18 E-value=19 Score=28.16 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=29.6
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLK 564 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~ 564 (573)
+.=||.++..|..|-....+.++.|+.|.++||..|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788888888888888888888888888887764
No 37
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=52.81 E-value=13 Score=31.07 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=29.2
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 535 MHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 535 ~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
|..|.++-...++.++.++++...|+.+|..|++
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678888888888899999999999999987753
No 38
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=52.68 E-value=26 Score=29.03 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=32.4
Q ss_pred EEEeccceeEEEEeccccccCceEEEEeCCcEEEEEeecChHHHHHHHHHH
Q 008222 52 KIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDG 102 (573)
Q Consensus 52 ~~Ip~~dI~~I~K~~ta~i~pNaI~I~t~~~k~~F~SF~sRD~af~li~~~ 102 (573)
-.|++.++..|+... |+++.|.|.+..|+|.. -+.++.-+=|..+
T Consensus 50 g~i~l~~~~~v~~~~-----~~~F~i~~~~r~~~l~a-~s~~e~~~Wi~~l 94 (115)
T 2cod_A 50 GIIPLSAISTVRVQG-----DNKFEVVTTQRTFVFRV-EKEEERNDWISIL 94 (115)
T ss_dssp CEEETTTEEEEEEET-----TTEEEEEESSCCEEEEC-SSHHHHHHHHHHH
T ss_pred CEEECCcceEEEeCC-----CCEEEEEeCCcEEEEEC-CCHHHHHHHHHHH
Confidence 689999999888765 78999999988888764 3444444433333
No 39
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=52.42 E-value=21 Score=29.65 Aligned_cols=38 Identities=5% Similarity=0.101 Sum_probs=30.0
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 565 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~ 565 (573)
+.=|+.++..|+.|+......+|.+.||...|+.+.++
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33467788888888888888888888888888876655
No 40
>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}
Probab=51.97 E-value=1.2e+02 Score=26.47 Aligned_cols=138 Identities=15% Similarity=0.199 Sum_probs=71.6
Q ss_pred ceEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEE
Q 008222 213 YTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQK 292 (573)
Q Consensus 213 ~~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~ 292 (573)
..+.++..|++|++++|+++-... .+..+... ..+.. ..|+. +.|. .+.|. ...+ ..
T Consensus 9 ~~i~~~~~i~Ap~e~Vw~altdp~---~~~~W~~~--------~~~~~-~~Gg~---~~~~----~~~g~-~~~g---~v 65 (151)
T 3q63_A 9 RTVVVERQISHPPEKLWRALTQPH---LIEEWLMK--------NDFKP-AVGHR---FNIS----ADWGG-VLDC---EV 65 (151)
T ss_dssp CEEEEEEEESSCHHHHHHHHHCHH---HHHHHSCE--------ECCCS-STTCE---EEEE----CTTSC-EEEE---EE
T ss_pred CeEEEEEEeCCCHHHHHHHHcCHH---HHHhhcCc--------CCCcc-CCCCE---EEEE----CCCCC-EEEE---EE
Confidence 467889999999999999775432 34443310 01111 12332 3333 23343 1222 22
Q ss_pred EEeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHH
Q 008222 293 FRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMW 372 (573)
Q Consensus 293 i~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~ 372 (573)
....++..+++.-.....+-+. -......|.|+.. .++|+|.+.-.- |.. .. ....+++.+-|...
T Consensus 66 ~e~~p~~~l~~~~~~~~~~~~~--~~~s~v~~~l~~~----~~gT~l~l~~~g-~~~----~~---~~~~~~~~~GW~~~ 131 (151)
T 3q63_A 66 LAVEPNKTLSYTWNLAHQDPAF--DLRSVVTFTLTPT----PTGTHLRMEQSG-FRP----DQ---RRAYGGAKMGWPQF 131 (151)
T ss_dssp EEEETTTEEEEECBBCCSSTTT--CBCCEEEEEEEEC----SSSEEEEEEEEC-CCT----TC---HHHHHHHHHHHHHH
T ss_pred EEEeCCCEEEEEEecCCCCCCC--CCCeEEEEEEEEc----CCCEEEEEEEeC-CCc----ch---HHHHHhhhhCHHHH
Confidence 2233455555544322111111 2445677888875 247988876431 211 01 23466788888889
Q ss_pred HHHHHHHHhhcccCC
Q 008222 373 IGMAHDVLKQKNLEK 387 (573)
Q Consensus 373 v~~l~e~lk~~~~k~ 387 (573)
+..++++|+...++.
T Consensus 132 L~~L~~~le~~~~~~ 146 (151)
T 3q63_A 132 FEKLEQLLDRTDLEH 146 (151)
T ss_dssp HHHHHHHHC------
T ss_pred HHHHHHHHhccCccc
Confidence 999999998876653
No 41
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=50.65 E-value=21 Score=32.96 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=32.5
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
++=|+.|+.-|++|+.-=..-+|.++.|+..|..|+..+|.
T Consensus 77 l~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~ 117 (152)
T 3a7p_A 77 LKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQ 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777778889999999999999888763
No 42
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=49.31 E-value=22 Score=29.92 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=18.8
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008222 532 ERRMHYLKDEMLMVEARLERMWHEHAVLRAQLK 564 (573)
Q Consensus 532 ~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~ 564 (573)
+.|+..|..|=...+++++.|..|..+||..|.
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555666666666666665554
No 43
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=48.91 E-value=28 Score=30.76 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=40.6
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 572 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (573)
+..|+..|...+.++..++++++..|.++.--....+-+|.|+.+
T Consensus 76 i~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er 120 (150)
T 3ajw_A 76 IQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDR 120 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999988888888999998754
No 44
>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5
Probab=48.82 E-value=1.5e+02 Score=26.48 Aligned_cols=24 Identities=4% Similarity=-0.009 Sum_probs=19.6
Q ss_pred cceEEEEeEEecCHHHHHhhhccC
Q 008222 212 CYTKVAETNFQMKVEDFYSLFFSD 235 (573)
Q Consensus 212 ~~~~l~e~~fpisv~~lF~lLF~D 235 (573)
...+.++.+|++|++++|+++-..
T Consensus 9 ~~~i~~~r~i~Ap~e~Vw~altdp 32 (178)
T 1xfs_A 9 ELDLMLKRELAVPVNLVWRGLTEP 32 (178)
T ss_dssp TTEEEEEEEESSCHHHHHHHHHCH
T ss_pred CceEEEEEEecCCHHHHHHHhCCH
Confidence 356788899999999999977543
No 45
>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*
Probab=47.01 E-value=1.3e+02 Score=29.01 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=73.5
Q ss_pred ccceEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccC--CCCceEEEEEEeeecccCCCceeeee
Q 008222 211 ECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHY--EFGYSRDLSFQHPIKVYFGAKFGSCK 288 (573)
Q Consensus 211 ~~~~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~--~~~~tR~vsYt~PL~~p~GPKst~c~ 288 (573)
.....++..++++|++++|.++ +|-. . +..++ ..|....+...+ .-+..|.++|. . |.+. ..
T Consensus 48 ~~c~~~v~~~I~ApadkVW~lv-~dF~-~-l~~w~-----p~V~s~e~~eGd~g~vGsVR~lt~~---~---G~p~--~~ 111 (211)
T 3k3k_A 48 GSCSSLHAQRIHAPPELVWSIV-RRFD-K-PQTYK-----HFIKSCSVEQNFEMRVGCTRDVIVI---S---GLPA--NT 111 (211)
T ss_dssp TEEEEEEEEEESSCHHHHHHHH-TCTT-C-GGGTC-----SSEEEEECCTTCCCCTTCEEEEEES---S---SSSC--EE
T ss_pred CeEeEEEEEEEcCCHHHHHHHH-hCcC-C-hhHcC-----ccceEEEEecCCCCCCCcEEEEEec---C---CCcc--ce
Confidence 4456778889999999999975 5421 1 12111 122222222221 22678988853 1 2112 24
Q ss_pred EEEEEEeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccc--cchhhhhhchHHHHH
Q 008222 289 ETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT--VWKGKIVQSTLEECR 366 (573)
Q Consensus 289 etQ~i~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT--~~Ks~IEkst~~g~k 366 (573)
.++++..+++....+.-+..-.+.||.+|-.+ +.+.+.+ . ++ |...+.|.+-. .-.+.=+..+..-+.
T Consensus 112 vkErL~~lDd~~~~~sYsIieg~lpv~~Y~st---i~V~p~~---~-gg---V~Wt~~fes~~~D~P~g~~~e~a~~~v~ 181 (211)
T 3k3k_A 112 STERLDILDDERRVTGFSIIGGEHRLTNYKSV---TTVHRFE---K-EN---RIWTVVLESYVVDMPEGNSEDDTRMFAD 181 (211)
T ss_dssp EEEEEEEEETTTTEEEEEEEEETTGGGTCEEE---EEEEEEE---E-TT---EEEEEEEEEEEEECCSSSSSSCCHHHHH
T ss_pred EEEEEEEEeccCCEEEEEEeecCcceeEEEEE---EEEEECC---C-CC---EEEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 45777777754322222222246899886543 4445542 2 22 55555564211 112222233333445
Q ss_pred HHHHHHHHHHHHHHhhc
Q 008222 367 DVYAMWIGMAHDVLKQK 383 (573)
Q Consensus 367 e~~~~~v~~l~e~lk~~ 383 (573)
..|+..++.|++.+++.
T Consensus 182 ~iy~~gL~~L~~~~e~~ 198 (211)
T 3k3k_A 182 TVVKLNLQKLATVAEAM 198 (211)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56666666666655543
No 46
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=46.86 E-value=1.6e+02 Score=26.46 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=64.7
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCc-ceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDK-EFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 293 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~t-di~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i 293 (573)
+-.+.++++|++++|.++ .|-. .+ ++.-..... ++.-+.+. ...|..|.+ |. ..++++
T Consensus 4 v~~si~I~Ap~~~VW~~v-~Df~-~~--~w~P~v~~s~e~~eg~~~--~~vGsvR~~----------gg-----~v~Erl 62 (160)
T 3p51_A 4 VYNSIVVDAPVERVWSRI-RNFH-DF--SWAPSLIKSCKKVGGGGG--YSVGARRLL----------NG-----EFLDTL 62 (160)
T ss_dssp EEEEEEESSCHHHHHHHH-CCTT-CC--TTCTTTCCCEEEESSCCT--TCTTCEEEE----------TT-----TEEEEE
T ss_pred EEEEEEECCCHHHHHHHH-hCcC-CC--eEccCceEEEEEEecCCC--CCCCCEEEE----------CC-----EEEEEE
Confidence 445678999999999875 4432 22 222111111 22222210 112567765 21 234676
Q ss_pred EeeeCCeEEEEEeeecCCCCCC-C-eeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHH
Q 008222 294 RVYRNSHLVIETSQEVHDVPYG-D-YFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAM 371 (573)
Q Consensus 294 ~~~~~~~yVVet~t~t~DVPYG-D-sF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~ 371 (573)
..+++....+.-+..-.+.|-. + .=.....|.+.+.+ ..++|.+.-.+.+.=. . .-+...++..|..
T Consensus 63 ~~~D~~~~~~sY~ii~g~l~~~~~~~~~y~~~~~v~p~~--~~ggt~V~w~~~~~~~--~-------~~~~~~~~~~~~~ 131 (160)
T 3p51_A 63 IAYSEIERRIMYSMDEGPSPVSSGEIYNYVGNLHLLPVT--IDDTTFVEWSGSWESA--S-------TEAVEYMNTVYRS 131 (160)
T ss_dssp EEEETTTTEEEEEEEECSTTSSTTTEEEEEEEEEEEEET--TTTEEEEEEEEEEEES--C-------SHHHHHHHHHHHH
T ss_pred EEEcCCCcEEEEEEecCCCcccccceeEEEEEEEEEEec--CCCCEEEEEEEEEEeC--H-------HHHHHHHHHHHHH
Confidence 6666532111111111346611 1 11345667777752 1458887766665432 1 1333444556666
Q ss_pred HHHHHHHHHh
Q 008222 372 WIGMAHDVLK 381 (573)
Q Consensus 372 ~v~~l~e~lk 381 (573)
.++.|++.++
T Consensus 132 ~L~~Lk~~~e 141 (160)
T 3p51_A 132 LLADLAAEFT 141 (160)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHHHh
Confidence 6666655544
No 47
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.56 E-value=21 Score=39.05 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=35.0
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 531 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 531 ~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
|++|+.+||+|+...=.+|.-||.=+.-++..|++||-
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999889999999998888888888883
No 48
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=46.43 E-value=12 Score=29.21 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=23.7
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQL 563 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~ 563 (573)
+.=||.++..|..|-.-..+.++.|+.|.++||.+|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444677777777777777777777777777777665
No 49
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=46.00 E-value=23 Score=31.99 Aligned_cols=45 Identities=16% Similarity=0.320 Sum_probs=37.3
Q ss_pred CCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 524 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 524 ~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
-.||++.|++|+..|.+.+.-.+..++.+|..+..+...|..+.+
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999988888888888888888777777776654
No 50
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=45.24 E-value=17 Score=29.94 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=16.8
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008222 532 ERRMHYLKDEMLMVEARLERMWHEHAVLRAQL 563 (573)
Q Consensus 532 ~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~ 563 (573)
++|+..|..|=...+++++.|+.|..+||..|
T Consensus 42 ~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555443
No 51
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.87 E-value=17 Score=32.70 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=28.8
Q ss_pred EEEeccceeEEEEeccccc-----cCceEEEEeCCcEEEEE
Q 008222 52 KIIPFYEVTAVRRAKTAGI-----FPNAIEIFAAGKKYFFA 87 (573)
Q Consensus 52 ~~Ip~~dI~~I~K~~ta~i-----~pNaI~I~t~~~k~~F~ 87 (573)
..||+.+|..++-.++..+ .|+..+|.|.+-.|+-.
T Consensus 49 keIpLseIL~v~~~~~~~~~~~~~~phcFEi~T~~~~y~Vg 89 (129)
T 2d9z_A 49 KEIPLSEILRISSPRDFTNISQGSNPHCFEIITDTMVYFVG 89 (129)
T ss_dssp CEECTTTCCEECCTTCCCCSSSCSCCCSEEEECSSCEEEEC
T ss_pred ceeeHHHhcccccccCccccCCCCCCceEEEEECCEEEEEc
Confidence 6799999999998865544 45889999988777743
No 52
>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*
Probab=44.56 E-value=2.1e+02 Score=27.09 Aligned_cols=153 Identities=11% Similarity=0.020 Sum_probs=78.1
Q ss_pred ceEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEe-ccccccCCCCceEEEEEEeeecccCCCceeeeeEEE
Q 008222 213 YTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKC-TSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQ 291 (573)
Q Consensus 213 ~~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~-spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ 291 (573)
..-++..++++|++++|.++=.-+.+.-| +..-....+.- +.+.....-|..|.++|. ++ .| .. ..++
T Consensus 30 c~s~~~~~I~Ap~d~VWalVrdF~~p~~w---~p~V~s~~~~e~Gdg~~~~~vGsVR~ltl~---~G--~P-~~--~i~E 98 (189)
T 3oji_A 30 CTSLIAHRVDAPAHAIWRFVRDFANPNKY---KHFIKSCTIRVNGNGIKEIKVGTIREVSVV---SG--LP-AS--TSVE 98 (189)
T ss_dssp EEEEEEEEESSCHHHHHHHHSCTTCGGGT---CTTEEEEEECCC----CCCSTTCEEEEEEC---SS--SS-BS--EEEE
T ss_pred cceeEEEEEcCCHHHHHHHHhCCCChhhC---ccccceEEEEecCCCCccCCCCcEEEEEec---CC--Cc-Cc--eEEE
Confidence 45577788999999999977443322111 11111112221 222211113688999884 11 12 11 3467
Q ss_pred EEEeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHH
Q 008222 292 KFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAM 371 (573)
Q Consensus 292 ~i~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~ 371 (573)
++..+++...++.-+..-.+.|..+|-.+..---+.-.+ ++|...-.+-|.|.- .+ -..+.++.++...+...
T Consensus 99 rL~~lDde~~~~sY~Iieg~~pv~nY~StitV~~~~~~~----~G~~~~~~T~v~es~--~~-D~P~g~t~e~~~~~v~~ 171 (189)
T 3oji_A 99 ILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLE----KDKKKRVYSVVLESY--IV-DIPQGNTEEDTRMFVDT 171 (189)
T ss_dssp EEEEEETTTTEEEEEEEECSBSSCSCEEEEEEEEEEEEC----TTSCEEEEEEEEEEE--EE-ECCTTSCHHHHHHHHHH
T ss_pred EEEEEeccCCEEEEEEEecCCccccEEEEEEEEeccccC----CCccccCcEEEEEeE--ec-CCCCCCCHHHHHHHHHH
Confidence 887787654333333334678999998887444333210 121112233333321 11 33466777777777776
Q ss_pred HHHHHHHHHhhc
Q 008222 372 WIGMAHDVLKQK 383 (573)
Q Consensus 372 ~v~~l~e~lk~~ 383 (573)
+++.--+.|++.
T Consensus 172 v~~~gL~~L~~~ 183 (189)
T 3oji_A 172 VVKSNLQNLAVI 183 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666555555544
No 53
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=44.28 E-value=60 Score=23.42 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008222 540 DEMLMVEARLERMWHEHAVLRAQLKDI 566 (573)
Q Consensus 540 ~e~~~~e~~~~~~~~~~~~~~~~~~~~ 566 (573)
+|....|..|+.+..-++.||+.|..|
T Consensus 20 eelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888999999999999999988765
No 54
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.79 E-value=23 Score=26.97 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=23.1
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008222 536 HYLKDEMLMVEARLERMWHEHAVLRAQLKD 565 (573)
Q Consensus 536 ~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~ 565 (573)
.-||-|+.-..++.+.|+.++.-|+++|+.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777777778888888888888887764
No 55
>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}
Probab=42.72 E-value=2.3e+02 Score=27.07 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=54.9
Q ss_pred CccceEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccC--CCCceEEEEEEeeecccCCCceeee
Q 008222 210 PECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHY--EFGYSRDLSFQHPIKVYFGAKFGSC 287 (573)
Q Consensus 210 ~~~~~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~--~~~~tR~vsYt~PL~~p~GPKst~c 287 (573)
|.....++..++++|++++|.++- |-. . +.+++. .|........+ .-|..|.++|. . |.+. .
T Consensus 51 ~~~c~~~v~~~I~ApadkVW~lv~-Df~-~-l~~w~p-----~V~s~e~~eGd~g~vGsVR~lt~~---~---G~p~--~ 114 (208)
T 3jrs_A 51 NGRCSSLLAQRIHAPPETVWSVVR-RFD-R-PQIYKH-----FIKSCNVSEDFEMRVGCTRDVNVI---S---GLPA--N 114 (208)
T ss_dssp TTEEEEEEEEEESSCHHHHHHHHT-CTT-C-GGGTCT-----TEEEEECCTTCCCSTTCEEEEEEC---T---TSSC--C
T ss_pred CCeEeEEEEEEEeCCHHHHHHHHh-CcC-C-hhHccc-----cceEEEEecCCCCCCCeEEEEEec---C---CCcc--c
Confidence 355667788899999999999763 321 1 122221 11111111111 22678988873 2 2111 2
Q ss_pred eEEEEEEeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEE
Q 008222 288 KETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCIL 339 (573)
Q Consensus 288 ~etQ~i~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL 339 (573)
..++++..+++....+.-+..-.++|+.+|-.+ ..+.+.. ..++|.+
T Consensus 115 ~vkErL~~lDde~~~~sYsIieG~lpv~~Y~st---i~V~p~~--~g~~t~V 161 (208)
T 3jrs_A 115 TSRERLDLLDDDRRVTGFSITGGEHRLRNYKSV---TTVHRFE--KEEEEER 161 (208)
T ss_dssp EEEEEEEEEETTTTEEEEEEEESSSSCTTCEEE---EEEEEEE--C-----C
T ss_pred eEEEEEEEEeccCCEEEEEEeeCCcceeeEEEE---EEEEEcc--CCCccEE
Confidence 345777777754322232333367999998653 3445432 1235654
No 56
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=42.71 E-value=59 Score=27.20 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=33.6
Q ss_pred EEEeccceeEEEEeccccccCceEEEEeCCcEEEEEeecChHHHHHHHHHH
Q 008222 52 KIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDG 102 (573)
Q Consensus 52 ~~Ip~~dI~~I~K~~ta~i~pNaI~I~t~~~k~~F~SF~sRD~af~li~~~ 102 (573)
-.|++.++..+....... -|+++.|.|.+..|+|.. -+.+++-.=|..+
T Consensus 59 g~i~L~~~~~v~~~~~~~-~~~~F~i~~~~r~~~l~a-~s~~e~~~Wi~al 107 (126)
T 1fao_A 59 RILDLTECSAVQFDYSQE-RVNCFCLVFPFRTFYLCA-KTGVEADEWIKIL 107 (126)
T ss_dssp EEEEGGGCCEEEEECSSS-SSSEEEEEETTEEEEEEC-SSHHHHHHHHHHH
T ss_pred eEEEccceEEEEecccCC-CCCEEEEEeCCcEEEEEC-CCHHHHHHHHHHH
Confidence 789999998887654322 478999999888888764 3445444433333
No 57
>3qrz_A Abscisic acid receptor PYL5; crystal, hormone receptor; 2.60A {Arabidopsis thaliana}
Probab=42.50 E-value=6 Score=38.75 Aligned_cols=144 Identities=15% Similarity=0.089 Sum_probs=67.6
Q ss_pred CccceEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeE
Q 008222 210 PECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKE 289 (573)
Q Consensus 210 ~~~~~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~e 289 (573)
|......+..++++|++++|.++-.-+. +..+.......++.-+.|. .-|..|.++|. . |.+.. ..
T Consensus 75 ~~~~~~~v~~~I~ApadkVW~lv~Df~~---pk~w~p~I~s~el~eGdg~---gvGSVR~lt~~---~---G~p~~--~v 140 (223)
T 3qrz_A 75 PDQCCSSVVQMIHAPPESVWALVRRFDN---PKVYKNFIRQCRIVQGDGL---HVGDLREVMVV---S---GLPAV--SS 140 (223)
T ss_dssp TTCEEECCCCCCSSCHHHHHHHHHCCSS---GGGTCSSCCCCCCCC---C---CSSCCCCCCC---------CCCC--CC
T ss_pred CCeEEEEEEEEEcCCHHHHHHHHhCCCC---hhHcchhcCEEEEEcCCCC---CCCeEEEEEec---C---CCccc--eE
Confidence 3445566678899999999998643332 1212111122222223331 22567887765 1 21111 22
Q ss_pred EEEEEeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHH
Q 008222 290 TQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVY 369 (573)
Q Consensus 290 tQ~i~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~ 369 (573)
++++..+++....+.-+..-.++|+.+|=.+ +.+.+. +.++|++.-.+.+. .-.+.=+..+..-+...|
T Consensus 141 kErLe~iDde~~~~sYsIieG~~p~~~Y~st---ikV~p~---~dGGT~V~Ws~~f~-----pp~g~~~e~a~~~v~~~y 209 (223)
T 3qrz_A 141 TERLEILDEERHVISFSVVGGDHRLKNYRSV---TTLHAS---DDEGTVVVESYIVD-----VPPGNTEEETLSFVDTIV 209 (223)
T ss_dssp CCCCSEEETTTTEEECCCTTCSSSCCCCCCE---EEC-----------CCEEEEEEC-----SCSSSCSTTHHHHHHHHH
T ss_pred EEEEEEEeccCCEEEEEEEeCCCccccEEEE---EEEEEc---CCCCEEEEEEEEEE-----cCCCCCHHHHHHHHHHHH
Confidence 3566666655444444444467888776655 445443 23467766665442 122333333444445555
Q ss_pred HHHHHHHHH
Q 008222 370 AMWIGMAHD 378 (573)
Q Consensus 370 ~~~v~~l~e 378 (573)
+..++.|++
T Consensus 210 ~~gL~~Lk~ 218 (223)
T 3qrz_A 210 RCNLQSLAR 218 (223)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 58
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=42.32 E-value=36 Score=30.06 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=27.5
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 565 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~ 565 (573)
|.=|+--|..|+.+.+-++|.+||+|.|.-.|+.++-+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 44456666667777788888889999888888776543
No 59
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=41.66 E-value=45 Score=25.28 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=25.6
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008222 527 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 566 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~ 566 (573)
-+++|++++.-|..=-.--.+-|.+-|.|+.-||++|++|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555554443333333566777899999999998876
No 60
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=40.37 E-value=39 Score=33.19 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=34.3
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 566 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~ 566 (573)
-..|..|+..+|.+-...+.+|+++|.|.+-+.+||...
T Consensus 166 k~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~ 204 (228)
T 3q0x_A 166 KQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQC 204 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999888888753
No 61
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=39.09 E-value=30 Score=27.91 Aligned_cols=49 Identities=14% Similarity=0.239 Sum_probs=36.3
Q ss_pred CcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcC
Q 008222 525 AESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKRE 573 (573)
Q Consensus 525 ~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (573)
.+++.=++|+++||.+=..-.||-.-||=.....||..+.+|||=..||
T Consensus 21 ~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERnqeRe 69 (71)
T 3bbp_D 21 VQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQERE 69 (71)
T ss_dssp --------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 3556667899999999999999999999999999999999999977764
No 62
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.03 E-value=31 Score=36.27 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=34.0
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 530 WLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 530 w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
=||+|+.+||+=+...=.+|..||.-+.-+++.+++||-
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 399999999998877777999999998888888888884
No 63
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.48 E-value=1.5e+02 Score=24.00 Aligned_cols=50 Identities=10% Similarity=-0.080 Sum_probs=34.1
Q ss_pred EEEeccceeEEEEeccccccCceEEEEeCCcEEEEEeecChHHHHHHHHHH
Q 008222 52 KIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDG 102 (573)
Q Consensus 52 ~~Ip~~dI~~I~K~~ta~i~pNaI~I~t~~~k~~F~SF~sRD~af~li~~~ 102 (573)
-.|++.++..|+......--|+.+.|.|.++.|+|. --+.++.-+=|..+
T Consensus 49 g~i~L~~~~~v~~~~~~~~~~~~F~i~~~~r~~~l~-a~s~~e~~~Wi~ai 98 (115)
T 2dn6_A 49 GDILLDENCCVESLPDKDGKKCLFLVKCFDKTFEIS-ASDKKKKQEWIQAI 98 (115)
T ss_dssp EEECCCTTCEEEEECCCTTCCSEEEEECSSCEEEEE-CSSHHHHHHHHHHH
T ss_pred cEEEecCcEEEEECCCCCCCeeEEEEEeCCCEEEEE-cCCHHHHHHHHHHH
Confidence 789999988887764322346899999988888874 45555554444433
No 64
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=38.10 E-value=1.9e+02 Score=24.79 Aligned_cols=139 Identities=12% Similarity=0.109 Sum_probs=64.5
Q ss_pred EEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEEE
Q 008222 215 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR 294 (573)
Q Consensus 215 ~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i~ 294 (573)
+-.+.++++|++++|.++ +|-. . +.++.......++..+.+ ..-|..|.+++ .-|. ..++++.
T Consensus 4 v~~si~I~ap~e~Vw~~l-~d~~-~-~~~w~p~v~~~~~~~g~~---~~~G~~r~~~~------~~G~-----~~~e~i~ 66 (151)
T 2le1_A 4 LRRSVEVAAPAADVWTLV-GDFS-A-IHRWHPQVSAPTLRGASP---HTPGAERVFGA------GTEE-----ELVERLV 66 (151)
T ss_dssp EEEEEEESSCHHHHHHHH-TTSG-G-GGGTCTTCCCEEEESSCT---TSTTCEEEESS------SSSS-----CEEEEEE
T ss_pred EEEEEEecCCHHHHHHHH-hCcC-c-HHHhcCCceEEEEECCCC---CCCCeEEEEEe------CCCC-----EEEEEEE
Confidence 445678999999999987 4421 1 122221111111111111 01234565443 1232 2345555
Q ss_pred eeeC--CeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHH
Q 008222 295 VYRN--SHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMW 372 (573)
Q Consensus 295 ~~~~--~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~ 372 (573)
.++. ..+..... -.+.|+. .....|.+.+. +.++|++.... .|.-++ .+....... -++..|..-
T Consensus 67 ~~d~~~~~~~~~~~--~g~~~~~---~~~~~~~l~~~---~~~gt~v~w~~--~f~~~p--~~~~~~~~~-~~~~~~~~~ 133 (151)
T 2le1_A 67 ERDESARRLVYTMP--DPPFPIT---NHRAVLEVVPR---DDRHCTVVWTA--MFDCSP--ETARELESV-IGDGVFAVG 133 (151)
T ss_dssp EEETTTTEEEEEEE--ECSSSEE---EEEEEEEEEES---SSSCEEEEEEE--EEEECH--HHHHHHHHH-TTTTHHHHH
T ss_pred EEeCCCCEEEEEEe--cCCCCce---eEEEEEEEEEC---CCCcEEEEEEE--EEEecC--CCCCHHHHH-HHHHHHHHH
Confidence 5553 33333322 1245633 33567888874 24578887775 443100 112211122 234456666
Q ss_pred HHHHHHHHhhc
Q 008222 373 IGMAHDVLKQK 383 (573)
Q Consensus 373 v~~l~e~lk~~ 383 (573)
++.++++++..
T Consensus 134 L~~Lk~~~e~~ 144 (151)
T 2le1_A 134 LNALAERYGRL 144 (151)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHHHHHhhcc
Confidence 66666655544
No 65
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=36.94 E-value=67 Score=26.00 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=36.8
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 008222 527 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHK 571 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (573)
+|+=+.|+|.-||.|..-|..+++.+..|-..-=..|.++|-|.+
T Consensus 3 ~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q 47 (75)
T 3mtu_A 3 SMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQ 47 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455678999999999999999999999987777777777776643
No 66
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=35.81 E-value=39 Score=30.51 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=31.3
Q ss_pred EEEeccceeEEEEeccccccCceEEEEe--C--------------CcEEEEEeec--ChHHHHHHHHHHHhh
Q 008222 52 KIIPFYEVTAVRRAKTAGIFPNAIEIFA--A--------------GKKYFFASFL--SRDEAFKLITDGWLQ 105 (573)
Q Consensus 52 ~~Ip~~dI~~I~K~~ta~i~pNaI~I~t--~--------------~~k~~F~SF~--sRD~af~li~~~w~~ 105 (573)
+.||+.+|..++.... ++.. +.+|.. . +..++=-||- -.|+=|..|.+.+..
T Consensus 61 ~~lpl~~v~~~e~~~~-~f~~-s~Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~al~~ 130 (140)
T 2hth_B 61 MAILLSQIVFIEEQAA-GIGK-SAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMTQ 130 (140)
T ss_dssp EEEEGGGEEEEEEECC-TTSS-CCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred EEEEhHHeeeeeeecc-cccc-CceEEEEecCCCccCCCCCcccccCcEEEEEEcCCCChHHHHHHHHHHHH
Confidence 8999999999999985 3332 344432 1 1233434443 346666666666554
No 67
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=35.51 E-value=2.2e+02 Score=24.76 Aligned_cols=110 Identities=7% Similarity=-0.052 Sum_probs=53.8
Q ss_pred eEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEEE
Q 008222 214 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 293 (573)
Q Consensus 214 ~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~i 293 (573)
.+-...++++|++++|+++-.-. -+.+|+. +...+..- +++ ...++ +..+.|+.... ......
T Consensus 5 ~v~~s~~I~ap~e~V~~~~~D~e---~~p~w~p--~~~~v~~~------~~~---~~~~~--~~~~~G~~~~~-~~~~v~ 67 (155)
T 3ggn_A 5 VVRDAVTIGKPAEQLYAVWRDLP---GLPLLMT--HLRSVEVL------DDK---RSRWT--VEAPAPLGTVS-WEAELT 67 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGG---GHHHHST--TCCEEEEC------SSS---EEEEE--EECCTTTCEEE-EEEEEE
T ss_pred EEEEEEEEcCCHHHHHHHHhCHH---HhHHHhh--hceEEEEe------cCC---eeEEE--EEecCCcceEE-EEEEEE
Confidence 34556789999999999664332 3444543 22222211 112 12233 23334522211 112222
Q ss_pred EeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcc
Q 008222 294 RVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSK 349 (573)
Q Consensus 294 ~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~K 349 (573)
...++..+..... + |..+....+|.+...+ +.++|+|.+....++..
T Consensus 68 e~~p~~~i~~~~~----~---g~~~~~~g~~~F~~~~--~~~gT~V~~~~~~~~~~ 114 (155)
T 3ggn_A 68 ADEPGKRIAWRSL----P---GARIENSGEVLFRPAP--GARGTEVVVRLTYRPPG 114 (155)
T ss_dssp EEETTTEEEEEEC----T---TCSSCEEEEEEEEECS--SSSCEEEEEEEEEC---
T ss_pred EecCCCEEEEEEC----C---CCCcceEEEEEEEECC--CCCceEEEEEEEEECCC
Confidence 2234555544431 1 2223467788898752 24589988888877743
No 68
>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}
Probab=35.43 E-value=2.3e+02 Score=24.98 Aligned_cols=147 Identities=9% Similarity=-0.053 Sum_probs=67.8
Q ss_pred ccceEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCc-ceEeccccccCCCCceEEEEEEeeecccCCCceeeeeE
Q 008222 211 ECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDK-EFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKE 289 (573)
Q Consensus 211 ~~~~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~t-di~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~e 289 (573)
....+.++..|++|++++|+++-.... +..+.-..+.. .....++ ..|+..| |. ...+-|... ...
T Consensus 11 ~~~~i~~~~~i~Ap~e~Vw~altdp~~---~~~W~~~~~~~~~~~~~d~---~~Gg~~~---~~--~~~~~G~~~--~~~ 77 (164)
T 3pu2_A 11 SATRLEFRRHFAATPEQLWAALTSPAL---LPAWLFARGWPMTECVFEP---HKGGLIR---QV--WTGPEGRTR--GLT 77 (164)
T ss_dssp BTTEEEEEEEESSCHHHHHHHHHCTTT---GGGTSCBTTBCEEEEEECC---STTCEEE---EE--EECGGGCEE--EEE
T ss_pred CCceEEEEEEECCCHHHHHHHhcCHHH---HhhEeCCCCeeeEEEEEec---cCCCEEE---EE--EECCCCCEE--EEE
Confidence 445788999999999999998766542 22221000000 0001111 1233222 21 111223221 111
Q ss_pred EEEEEeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHH
Q 008222 290 TQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVY 369 (573)
Q Consensus 290 tQ~i~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~ 369 (573)
-......++..++..-.....+.| +. ....|.|+.. .++|+|.+.-. |...-.....+. .++.+-+
T Consensus 78 g~v~e~~p~~rl~~t~~~~~~~~~-~~---s~vt~~l~~~----~~gT~l~l~~~--~~~~~~~~~~~~----~~~~~GW 143 (164)
T 3pu2_A 78 GRVILAEPPHRLIHSELYDEDWTG-GE---TLVTLQLLPV----EGGTELAMAVD--YATPEARDAVAA----SAMATEM 143 (164)
T ss_dssp EEEEEEETTTEEEEEEBCC---CC-SC---EEEEEEEEEE----TTEEEEEEEEE--CSSTTHHHHHHT----STHHHHH
T ss_pred EEEEEEcCCCEEEEEEeccCCCCC-CC---EEEEEEEEEc----CCCEEEEEEEE--eCCHHHHHHHHH----hhHHHHH
Confidence 122223345555554432112234 32 5677888876 34799887655 532111122222 3455566
Q ss_pred HHHHHHHHHHHhhcc
Q 008222 370 AMWIGMAHDVLKQKN 384 (573)
Q Consensus 370 ~~~v~~l~e~lk~~~ 384 (573)
...++.|+++|++..
T Consensus 144 ~~~L~~L~~~l~~~~ 158 (164)
T 3pu2_A 144 EEAYRHLDVMLAALE 158 (164)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhh
Confidence 666666666666553
No 69
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=35.23 E-value=1e+02 Score=30.45 Aligned_cols=117 Identities=11% Similarity=-0.051 Sum_probs=60.3
Q ss_pred eEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCC-CCceEEEEE--EeeecccCCCceeeeeEE
Q 008222 214 TKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE-FGYSRDLSF--QHPIKVYFGAKFGSCKET 290 (573)
Q Consensus 214 ~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~-~~~tR~vsY--t~PL~~p~GPKst~c~et 290 (573)
..-++.++++|++.+|++|. |-. .|...|-.+..+...+. ++. ++-| ..|. +.||-+.+=...
T Consensus 89 ~~k~~~~v~~~~~~v~~~L~-D~~---------~R~~WD~~~~~~~vle~id~~--~ivY~~~~p~--~~~~v~~RDFV~ 154 (258)
T 3fo5_A 89 SFHMEMVVHVDAAQAFLLLS-DLR---------QRPEWDKHYRSVELVQQVDED--DAIYHVTSPA--LGGHTKPQDFVI 154 (258)
T ss_dssp EEEEEEEESSCHHHHHHHHH-CGG---------GGGGTCTTCCEEEEEEEEETT--EEEEEEEECC--CTTCSSCEEEEE
T ss_pred EEEEEEEEeCCHHHHHHHHh-Cch---------hHhHhhhhccEEEEEEEcCCC--eEEEEEecCC--ccCCCCCCEEEE
Confidence 34567889999999999998 321 11112211122211110 011 3334 2222 113322222222
Q ss_pred EEEEe--e-eCCeEEE-EEeeecCCCCCCCe----eEEEEEEEEEecCCCCCCceEEEEEEEEEE
Q 008222 291 QKFRV--Y-RNSHLVI-ETSQEVHDVPYGDY----FRVEGLWDVMRDDGGSKEGCILRVYVNVAF 347 (573)
Q Consensus 291 Q~i~~--~-~~~~yVV-et~t~t~DVPYGDs----F~Ve~R~~It~~~~~s~~~CrL~V~~~V~F 347 (573)
.+... . +++.|+| ..++.-+++|=..- ....+.|+|.+. ++++|+|.....+.-
T Consensus 155 lr~~r~~~~~G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~---~~~~t~VtY~~q~dp 216 (258)
T 3fo5_A 155 LASRRKPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWRE---GDQLTKVSYYNQATP 216 (258)
T ss_dssp EEEEECCSSTTCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEE---ETTEEEEEEEESCCG
T ss_pred EEEEEeccCCCCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEEC---CCCCEEEEEEEeeCC
Confidence 33221 1 2333654 44666678886554 345689999997 356899888777763
No 70
>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0
Probab=33.89 E-value=2.6e+02 Score=24.97 Aligned_cols=149 Identities=9% Similarity=0.027 Sum_probs=72.2
Q ss_pred ccceEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCc-ceEeccccccCCCCceEEEEEEeeecccCCCceeeeeE
Q 008222 211 ECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDK-EFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKE 289 (573)
Q Consensus 211 ~~~~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~t-di~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~e 289 (573)
+...+.++..|++|++++|+++-.. ..+..+.--.+.. .....+|. .|+..| |. ...|=|.. +..
T Consensus 11 ~~~~i~~~r~i~Ap~e~Vw~a~Tdp---e~l~~W~~p~~~~~~~~~~d~r---~GG~~~---~~--~~~~~G~~---~~~ 76 (168)
T 3uid_A 11 DTLTLTITAEFAAPVTRIWQIYADP---RQLEKVWGPPSHPATVVDHDLR---PGGRVT---YF--MTGPDGEK---YAG 76 (168)
T ss_dssp TTTEEEEEEEESSCHHHHHHHHHSH---HHHHHHHCCTTSCCEEEEECCS---TTCEEE---EE--EECTTSCE---EEE
T ss_pred CCCEEEEEEEEcCCHHHHHHHhCCH---HHHhhEeCCCCeeeeEEEEccc---CCcEEE---EE--EECCCCCE---Eee
Confidence 3456889999999999999977543 3455544111100 01112222 234222 22 12222322 212
Q ss_pred EEEEE-eeeCCeEEEEEeee-cCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHH
Q 008222 290 TQKFR-VYRNSHLVIETSQE-VHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRD 367 (573)
Q Consensus 290 tQ~i~-~~~~~~yVVet~t~-t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke 367 (573)
.-+|. ..++..++..-... ..+.|.++-=.....|.|+.. .++|+|.+.. .|....-....++. |+.+
T Consensus 77 ~g~~~ev~p~~rlv~t~~~~~~~g~p~~~~~~s~vt~~l~~~----~~gT~lt~~~--~~~~~~~~~~~~~~----g~~~ 146 (168)
T 3uid_A 77 YWEITAVDEPHSFSFLDGFADEDFNPNTDLPVSTNVYTFTEH----DGGTRATYVG--TYASAEALQQVLDM----GVIE 146 (168)
T ss_dssp EEEEEEEETTTEEEEEEEEECTTSCBCSSCCCEEEEEEEEEE----TTEEEEEEEE--ECSCHHHHHHHHHT----THHH
T ss_pred EEEEEEEeCCcEEEEEEeeccCCCCcCCCCCcEEEEEEEEEC----CCCEEEEEEE--ecCCHHHHHHHHHh----cHHH
Confidence 22333 33455555544322 123443310024567788775 3589999874 35321112222222 4556
Q ss_pred HHHHHHHHHHHHHhhc
Q 008222 368 VYAMWIGMAHDVLKQK 383 (573)
Q Consensus 368 ~~~~~v~~l~e~lk~~ 383 (573)
-+...++.++++|+.-
T Consensus 147 GW~~~L~~L~~~l~~~ 162 (168)
T 3uid_A 147 GASSAINQIDALLTAT 162 (168)
T ss_dssp HHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666666667666653
No 71
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A
Probab=28.96 E-value=2.7e+02 Score=23.79 Aligned_cols=117 Identities=9% Similarity=0.100 Sum_probs=64.2
Q ss_pred ceEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEEE
Q 008222 213 YTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQK 292 (573)
Q Consensus 213 ~~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ~ 292 (573)
++...+.++++|+++||.++-.+.. + ||... |. ++
T Consensus 5 g~~~~e~~i~~~a~k~w~~~~~~~~---~---------------p~g~~-------------------G~--------~~ 39 (122)
T 1vjh_A 5 GALSVKFDVKCPADKFFSAFVEDTN---R---------------PFEKN-------------------GK--------TE 39 (122)
T ss_dssp EEEEEEEEESSCHHHHHHHHHHHTT---S---------------CSSTT-------------------CE--------EE
T ss_pred cEEEEEEEecCCHHHHHHHHhhccc---C---------------CccCC-------------------Cc--------cE
Confidence 3566788899999999998644321 1 26221 21 16
Q ss_pred EEeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHHH
Q 008222 293 FRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMW 372 (573)
Q Consensus 293 i~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~~ 372 (573)
+..+++..+.+..+..-.|++ ..+=.....|.+.+.+ .+++|.++. .++|.+..- ..+. -+++++....+
T Consensus 40 ie~iD~~~~~~~y~iieGd~~-~~~~~~~~~~~v~~~~--~~~gs~vkw--t~~ye~~~~--~~~~---p~~~~~~~~~~ 109 (122)
T 1vjh_A 40 IEAVDLVKKTMTIQMSGSEIQ-KYFKTLKGSIAVTPIG--VGDGSHVVW--TFHFEKVHK--DIDD---PHSIIDESVKY 109 (122)
T ss_dssp EEEEETTTTEEEEEEECTTGG-GTEEEEEEEEEEEECS--SSSCEEEEE--EEEEEESST--TSCC---SHHHHHHHHHH
T ss_pred EEEEecccCEEEEEEEEcccc-ccEEEEEEEEEEEEec--CCCCeEEEE--EEEEEECCC--CCCC---HHHHHHHHHHH
Confidence 666665544444444434444 2111234455566541 134676554 445554321 0111 14557888888
Q ss_pred HHHHHHHHhhcc
Q 008222 373 IGMAHDVLKQKN 384 (573)
Q Consensus 373 v~~l~e~lk~~~ 384 (573)
.+.+..||-+++
T Consensus 110 ~k~ie~yll~~p 121 (122)
T 1vjh_A 110 FKKLDEAILNFK 121 (122)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHhhCC
Confidence 999999987764
No 72
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=28.19 E-value=95 Score=24.63 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=33.5
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 526 ESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 526 ~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
|+=+|.+.++..|..+...-...|..-+.|..-||.++..|+
T Consensus 28 EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~ 69 (77)
T 3trt_A 28 EAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLT 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 556799999988888888777778888888888887777665
No 73
>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}
Probab=26.65 E-value=3.1e+02 Score=24.24 Aligned_cols=125 Identities=9% Similarity=0.003 Sum_probs=65.4
Q ss_pred ceEEEEeEEecCH-HHHHhhhccCCchHHHHHHHHHcCCcceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEEE
Q 008222 213 YTKVAETNFQMKV-EDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQ 291 (573)
Q Consensus 213 ~~~l~e~~fpisv-~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ 291 (573)
.+...+..+++|+ +.+|+++=..+ -+ +.|-..+. ..+.-.|+.....+ |+..+++.+.
T Consensus 4 ~~i~~e~~i~A~~~~~VW~~IStPe---gL--------------~~Wfad~v--~~~g~~~~F~w~~~-~~~~~~v~~~- 62 (136)
T 2lio_A 4 EKIHLEYLLNATSKNILWSAISTPT---GL--------------EDWFADKV--VSDDKTVTFCWGKT-EQRQAGIVAI- 62 (136)
T ss_dssp EEEEEEEEECTTSCTHHHHGGGSHH---HH--------------TTTSSSEE--EEETTEEEEESSSS-SEEEEEEEEE-
T ss_pred CcEEEEEEecCChHHHHHHHhCChh---hh--------------hcccCCCC--cccCceEEEEeCCC-CcEeEEEEEE-
Confidence 4677889999999 99999885543 11 33432211 01211233333333 5443333332
Q ss_pred EEEeeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHHH
Q 008222 292 KFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAM 371 (573)
Q Consensus 292 ~i~~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~~ 371 (573)
-++..+-..=. .+ + ++.-+++.++..... .+.+.|.|. .|... ...++++.-|..
T Consensus 63 ----~~~~~i~FrW~---~~-~-~~~~~~e~~l~~~~~----t~~~~L~vt---dFa~~---------~~~e~~~~gW~~ 117 (136)
T 2lio_A 63 ----RAYSFIRFHWL---DD-E-NERDYFEIKMSYNEL----TGDYVLEIT---DFSEA---------DEADDLKELWDS 117 (136)
T ss_dssp ----ETTTEEEEEES---SS-S-SSSCEEEEEEEECTT----TSCEEEEEE---EEECH---------HHHHHHHHHHHH
T ss_pred ----cCCCEEEEEcc---CC-C-CCceEEEEEEEecCC----CCcEEEEEe---cCCCc---------cchhHHHhhHHH
Confidence 22332222211 01 1 333345555444321 247888887 66532 247778888888
Q ss_pred HHHHHHHHHhhc
Q 008222 372 WIGMAHDVLKQK 383 (573)
Q Consensus 372 ~v~~l~e~lk~~ 383 (573)
.++.|++++...
T Consensus 118 ~l~~Lk~~lg~~ 129 (136)
T 2lio_A 118 QVSKLRRTCGFL 129 (136)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHhhhh
Confidence 888888777654
No 74
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=26.35 E-value=1.6e+02 Score=22.23 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=36.4
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
++=|.+-=.|||.|..---.||-++-+|-.-+|.-|+.|..
T Consensus 12 Ve~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 12 VEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 56677888899999999999999999999999999998864
No 75
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.45 E-value=52 Score=26.70 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=25.4
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 008222 527 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVL 559 (573)
Q Consensus 527 ~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~ 559 (573)
=|.+|+++...|..|+.....+.+.|++.++.|
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788888888888888888888888777655
No 76
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.93 E-value=47 Score=30.76 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=35.0
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 529 PWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 529 ~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
+=+|+|...|+..+.-.+.+|++++...+-||.-|..++
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 458999999999999999999999999999998777654
No 77
>2doh_C Fragment, plasminogen-binding group A streptococcal M-like PAM; lysine-binding site, kringle domains, hydrolase; HET: DIO; 2.30A {Homo sapiens} PDB: 2kj4_B 1i5k_C 2doi_C
Probab=24.86 E-value=50 Score=22.28 Aligned_cols=11 Identities=45% Similarity=0.519 Sum_probs=6.4
Q ss_pred HHHHHHHHHHH
Q 008222 548 RLERMWHEHAV 558 (573)
Q Consensus 548 ~~~~~~~~~~~ 558 (573)
||..=||+|+.
T Consensus 12 rLknERh~~~e 22 (30)
T 2doh_C 12 RLKNERHEEAE 22 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444777776
No 78
>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}
Probab=24.65 E-value=3.5e+02 Score=23.64 Aligned_cols=145 Identities=10% Similarity=0.092 Sum_probs=71.4
Q ss_pred cceEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceE----eccccccCCCCceEEEEEEeeecccCCCceeee
Q 008222 212 CYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFK----CTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSC 287 (573)
Q Consensus 212 ~~~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~----~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c 287 (573)
...+.++..|++|++++|+++-... .+..+. +...+. ..++ ..|+. +.|.. ..+-|.. .
T Consensus 11 ~~~i~~~~~i~Ap~e~Vw~altdp~---~~~~W~---~p~~~~~~~~~~d~---~~Gg~---~~~~~--~~~~g~~---~ 73 (172)
T 2ldk_A 11 ALSFSIVAEFDADVKRVWAIWEDPR---QLERWW---GPPTWPATFETHEF---TVGGK---AAYYM--TGPDGTK---A 73 (172)
T ss_dssp TTEEEEEEEESSCHHHHHHHHHCHH---HHHTTS---SCTTSCEEEEEECC---STTCE---EEEEE--ECTTSCE---E
T ss_pred CceEEEEEEeCCCHHHHHHHhCCHH---HHHhcc---CCCCcccceEEEee---cCCCE---EEEEE--ECCCCCE---E
Confidence 3568889999999999999775432 333332 111111 1111 12332 22322 1222321 1
Q ss_pred eEEEEEEee-eCCeEEEEEeeecC-CCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHH
Q 008222 288 KETQKFRVY-RNSHLVIETSQEVH-DVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEEC 365 (573)
Q Consensus 288 ~etQ~i~~~-~~~~yVVet~t~t~-DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ 365 (573)
...-++.-+ ++..++..-..... +.|-++--.....|.|+.. .++|+|.+... |...-.....+ ..++
T Consensus 74 ~~~~~v~e~~p~~rl~~~~~~~~~~g~p~~~~~~~~v~~~l~~~----~~gT~lt~~~~--~~~~~~~~~~~----~~~~ 143 (172)
T 2ldk_A 74 RGWWQFTTIEAPDHLEFDDGFADEHGAPVDELGVTHATVKLEPL----ENRTRMTIIST--FESEEQMQKMA----EMGM 143 (172)
T ss_dssp EEEEEEEEECSSSEEEEEEEEBCSSCCBCTTTCEEEEEEEEEEE----TTEEEEEEEEE--ESCHHHHHHHH----HHTH
T ss_pred eeEEEEEEEcCCCEEEEEEeecCCCCCccCCCccEEEEEEEEEc----CCCEEEEEEEE--cCCHHHHHHHH----HhhH
Confidence 122344434 45555555432211 2443322246678888875 34898887755 32111111222 2345
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 008222 366 RDVYAMWIGMAHDVLKQK 383 (573)
Q Consensus 366 ke~~~~~v~~l~e~lk~~ 383 (573)
.+-+...++.++++++..
T Consensus 144 ~~Gw~~~L~~L~~~le~~ 161 (172)
T 2ldk_A 144 EEGMREAIEQIDAVLSEP 161 (172)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666677777777777543
No 79
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.51 E-value=85 Score=31.23 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=30.3
Q ss_pred CcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 525 AESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 525 ~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
.+-+..|++.+..|..--.-..+.|..+|+|+..||++|+.|-
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4557778877777755555445577788888888888877663
No 80
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=24.13 E-value=80 Score=21.19 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=24.5
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHE 555 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~ 555 (573)
+.=|.||+..||.--+.|....+.+||.
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3458899999999999999999999985
No 81
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.88 E-value=1.4e+02 Score=24.35 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=26.9
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhH-HHhhh
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI-EQLHK 571 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~-~~~~~ 571 (573)
|.-||-|+.|+-+=+.---.-+-+.+++...|+.+|..| +||+.
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444455556678888888888877 45543
No 82
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.80 E-value=2.1e+02 Score=20.90 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=24.0
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 528 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 528 ~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
-++|.|.|..||..-...|..-+.+-.=.+-|+..+.+||.
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 36888888888765554444433343445555555555554
No 83
>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*
Probab=23.78 E-value=3.8e+02 Score=23.66 Aligned_cols=143 Identities=8% Similarity=-0.061 Sum_probs=73.2
Q ss_pred ceEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHc-CCc-ceEeccccccCCCCceEEEEEEeeecccCCCceeeeeEE
Q 008222 213 YTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKC-GDK-EFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKET 290 (573)
Q Consensus 213 ~~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~r-g~t-di~~spW~~~~~~~~tR~vsYt~PL~~p~GPKst~c~et 290 (573)
..+.++..|++|++++|+++-.. ..+..+.--. +.. .....++. .|+..| |. ...+=|+. +...
T Consensus 9 ~~i~~~r~i~Ap~e~Vw~a~Tdp---e~l~~W~~~~~~~~~~~~~~d~~---~GG~~~---~~--~~~~~G~~---~~~~ 74 (166)
T 3put_A 9 TTFVIERRLTAPVARVFRAWSTP---ESKRQWFACHGEWVPLEYALDFR---PGGTER---NY--TADTDGLL---HAYD 74 (166)
T ss_dssp EEEEEEEEESSCHHHHHHHHHCH---HHHHHHHTCC---CCSEEEECCS---TTCEEE---EE--EECTTSCE---EEEE
T ss_pred ceEEEEEEECCCHHHHHHHhCCH---HHHHhcCCCCCCceeeEEEeCcc---cCCEEE---EE--EECCCCCE---EEEE
Confidence 46788999999999999977543 3455544211 111 01112222 234222 22 11222432 1122
Q ss_pred EEEEe-eeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHH
Q 008222 291 QKFRV-YRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVY 369 (573)
Q Consensus 291 Q~i~~-~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~ 369 (573)
-++.- .++..++..-.....+.|.+ .....|.|+.. .++|+|.+.-...+.-. ....+++.+-+
T Consensus 75 g~v~ev~p~~rlv~t~~~~~~~~~~~---~s~vt~~l~~~----~~gT~ltl~~~~~~~~~--------~~~~~~~~~GW 139 (166)
T 3put_A 75 ARYIDIVPDTRIIYAYEMKLGQTRIS---ASLVTVAFDVE----PSGTRMVFTEQVVFLDG--------YGDNGARLQGT 139 (166)
T ss_dssp EEEEEEETTTEEEEEEEEEETTEEEE---EEEEEEEEEEC----SSSEEEEEEEEEEEETT--------CCCTTHHHHHH
T ss_pred EEEEEEcCCcEEEEEEEecCCCCCCC---ceEEEEEEEEC----CCCEEEEEEEEecCccc--------hhhHHHHHHHH
Confidence 23333 34555555443221222221 24567778775 35899988765432210 11235677778
Q ss_pred HHHHHHHHHHHhhcc
Q 008222 370 AMWIGMAHDVLKQKN 384 (573)
Q Consensus 370 ~~~v~~l~e~lk~~~ 384 (573)
...++.++++|+...
T Consensus 140 ~~~L~~L~~~le~~~ 154 (166)
T 3put_A 140 EIGLDNLELFLVRET 154 (166)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCC
Confidence 888888888887653
No 84
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=23.34 E-value=1.6e+02 Score=24.28 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 542 MLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 542 ~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
+.-.-.+|+.||.|.+-||-+++.+.+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~ 48 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQY 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344557899999999999999987654
No 85
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.12 E-value=88 Score=25.10 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=19.3
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 534 RMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 534 r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
+|..|-+++...|+..+.+..|-..||.++..|.
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555566666666666666553
No 86
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=22.65 E-value=1.1e+02 Score=25.17 Aligned_cols=49 Identities=24% Similarity=0.421 Sum_probs=32.0
Q ss_pred EEEeccceeEEEEeccc--cccCceEEEEeCCcEEEEEeecChHHHHHHHHH
Q 008222 52 KIIPFYEVTAVRRAKTA--GIFPNAIEIFAAGKKYFFASFLSRDEAFKLITD 101 (573)
Q Consensus 52 ~~Ip~~dI~~I~K~~ta--~i~pNaI~I~t~~~k~~F~SF~sRD~af~li~~ 101 (573)
-.|++.++..|...... .--++++.|.|.+..|+|.. -+.+++-+=|..
T Consensus 55 g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~~r~~~l~a-~s~~e~~~W~~a 105 (125)
T 1eaz_A 55 RVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQA-DSPEEMHSWIKA 105 (125)
T ss_dssp EEEEGGGCCEEEECTTHHHHTCSSEEEEECSSCEEEEEC-SSHHHHHHHHHH
T ss_pred eEEEcccceEEeeccccccCCcCCEEEEEeCCcEEEEEc-CCHHHHHHHHHH
Confidence 68999999888774321 12378999999888888754 344444433333
No 87
>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}
Probab=21.72 E-value=4e+02 Score=23.20 Aligned_cols=147 Identities=11% Similarity=0.087 Sum_probs=71.3
Q ss_pred ceEEEEeEEecCHHHHHhhhccCCchHHHHHHHHHcCCcceEeccccc-cCCCCceEEEEEEeeecccCCCceeeeeEEE
Q 008222 213 YTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHR-HYEFGYSRDLSFQHPIKVYFGAKFGSCKETQ 291 (573)
Q Consensus 213 ~~~l~e~~fpisv~~lF~lLF~D~s~~Fl~~f~~~rg~tdi~~spW~~-~~~~~~tR~vsYt~PL~~p~GPKst~c~etQ 291 (573)
..+.++..|++|++++|+++-.. ..+..+.-.. .++....-.. ...|+..| |. ...+=|... ...-
T Consensus 8 ~~i~~~r~i~Ap~e~Vw~altdp---~~~~~W~~~~--~~~~~~~~~~d~~~Gg~~~---~~--~~~~~G~~~---~~~g 74 (161)
T 3rd6_A 8 STFTIERTYPQSPDRVFHAFADK---ATVRRWRVDG--DGFTVAEFSFDFRVGGGEV---SR--FSYGGGPEV---RLDA 74 (161)
T ss_dssp EEEEEEEEESSCHHHHHHHHHCH---HHHHHHTCCC--CC---CEEEECCSTTCEEE---EE--ECSTTSCCE---EEEE
T ss_pred ceEEEEEEECCCHHHHHHHhcCH---HHHhhccCCC--CCceeeEEEEccCcCCEEE---EE--EECCCCCEE---EEEE
Confidence 45788899999999999977543 2444443110 0111110000 11233222 22 222223321 1122
Q ss_pred EEE-eeeCCeEEEEEeeecCCCCCCCeeEEEEEEEEEecCCCCCCceEEEEEEEEEEcccccchhhhhhchHHHHHHHHH
Q 008222 292 KFR-VYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYA 370 (573)
Q Consensus 292 ~i~-~~~~~~yVVet~t~t~DVPYGDsF~Ve~R~~It~~~~~s~~~CrL~V~~~V~F~KsT~~Ks~IEkst~~g~ke~~~ 370 (573)
++. ..++..++..-.....+.|. -.....|.|+.. .++|+|.+.-...+... ....+++.+-|.
T Consensus 75 ~v~e~~p~~rl~~~~~~~~~~~~~---~~s~v~~~l~~~----~~gT~lt~~~~~~~~~~--------~~~~~~~~~GW~ 139 (161)
T 3rd6_A 75 QFQDIVPDQRIVFSYRMAIGPQPM---SASLTTVELTPS----GDGTRLTYTEQGAFFDG--------VDSAKGREEGTR 139 (161)
T ss_dssp EEEEEETTTEEEEEEEEEETTEEE---EEEEEEEEEEEE----TTEEEEEEEEEEEEETT--------CCCHHHHHHHHH
T ss_pred EEEEEcCCCEEEEEEEecCCCCCC---CceEEEEEEEEC----CCCEEEEEEEEecCcch--------hhhHHHHHHHHH
Confidence 232 33455555544322233231 235677888775 34799988766433210 123467888888
Q ss_pred HHHHHHHHHHhhcccCC
Q 008222 371 MWIGMAHDVLKQKNLEK 387 (573)
Q Consensus 371 ~~v~~l~e~lk~~~~k~ 387 (573)
..++.++++|....++.
T Consensus 140 ~~L~~L~~~le~~~~~~ 156 (161)
T 3rd6_A 140 GLLEALAAELQKWKLEH 156 (161)
T ss_dssp HHHHHHHHHC-------
T ss_pred HHHHHHHHHHhhcchhh
Confidence 88888998888877653
No 88
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.48 E-value=49 Score=25.21 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 008222 542 MLMVEARLERMWHEHAVLRAQLKDIEQL 569 (573)
Q Consensus 542 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 569 (573)
|.-.|.+++.|..|-..|+.++..|..+
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666543
No 89
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.23 E-value=88 Score=23.85 Aligned_cols=52 Identities=12% Similarity=0.205 Sum_probs=32.9
Q ss_pred CCCcccCCCcccCCCCCCCcchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 507 SPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~w~~~r~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
+|.++-+-.-..+..||+.+-|.+.-. .+...++.+..|...||.+++.|+.
T Consensus 4 Tp~dI~~k~F~~~~rGY~~~EVD~FLd----------~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 4 TPNDIHNKTFTKSFRGYDEDEVNEFLA----------QVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp CHHHHTTCCCCEETTEEEHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CHHHHhhCcCCCCCCCcCHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444333334455788877765432 3677888999999999999988864
No 90
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=20.97 E-value=1.3e+02 Score=20.61 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=25.0
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008222 534 RMHYLKDEMLMVEARLERMWHEHAVLRAQ 562 (573)
Q Consensus 534 r~~~~~~e~~~~e~~~~~~~~~~~~~~~~ 562 (573)
.+..+|+|-...|..++.+..|.+.+|--
T Consensus 3 kiaaikeeqaaieeeiqaikeeiaaikyl 31 (36)
T 1bb1_B 3 KIAAIKEEQAAIEEEIQAIKEEIAAIKYL 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999998843
No 91
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.26 E-value=1.1e+02 Score=33.01 Aligned_cols=28 Identities=18% Similarity=0.314 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008222 540 DEMLMVEARLERMWHEHAVLRAQLKDIE 567 (573)
Q Consensus 540 ~e~~~~e~~~~~~~~~~~~~~~~~~~~~ 567 (573)
........++++|++|.+.++++++.|+
T Consensus 551 ~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 551 KQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455566666666666666665
No 92
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.05 E-value=1.4e+02 Score=23.09 Aligned_cols=30 Identities=7% Similarity=0.203 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008222 539 KDEMLMVEARLERMWHEHAVLRAQLKDIEQ 568 (573)
Q Consensus 539 ~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~ 568 (573)
|+++...|.+.+.|..|-..|++++..|+.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777777777777776654
Done!