BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008227
(573 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 512 RFDQGTYHT--TDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRP 569
RF+ + + T CV+CM + Q V PC+H FH+ C+ +W+ CP CR
Sbjct: 13 RFNPNNHQSEQTLCVVCMCDFESRQL---LRVLPCNHEFHAKCVDKWLKANRTCPICRAD 69
Query: 570 LPPA 573
P+
Sbjct: 70 SGPS 73
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570
C +C+ D R ++ + PC H FH CL +W++++ CP C P+
Sbjct: 18 CAVCLE--DFKPR-DELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCR 567
C IC++ +++ D PC H FH C+ +W+ +CP CR
Sbjct: 17 CTICLS---ILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 58
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 543 PCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572
PC H+FH C+ W+ CP CR PP
Sbjct: 60 PCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 543 PCDHFFHSGCLQRWMDIKMECPTCRRPL 570
PC+H FH C+ W++ CP CR+ L
Sbjct: 35 PCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCR 567
+C ICM R++ ++ PC H F C+ +W D CP CR
Sbjct: 17 ECCICMDG-----RAD--LILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 511 RRFDQGTYH-------TTDCVICMTAI-DLMQRSNDCMVTPCDHFFHSGCLQRWMDIKME 562
++ + YH T C ICM +++Q + T C H F S CL+ +
Sbjct: 56 KKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT 115
Query: 563 CPTCRRPL 570
CPTCR+ +
Sbjct: 116 CPTCRKKI 123
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 520 TTDCVICMTAI-DLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570
T C ICM +++Q + T C H F S CL+ + CPTCR+ +
Sbjct: 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 520 TTDCVICMTAI-DLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570
T C ICM +++Q + T C H F S CL+ + CPTCR+ +
Sbjct: 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 544 CDHFFHSGCLQRWMDIKMECPTCRRPL 570
C H F S C+ WM K+ECP CR+ +
Sbjct: 71 CAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 544 CDHFFHSGCLQRWMDIKMECPTCRRPL 570
C H F S C+ WM K+ECP CR+ +
Sbjct: 71 CAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 520 TTDCVICMTAI-DLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570
T C ICM +++Q + T C H F S CL+ + CPTCR+ +
Sbjct: 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 544 CDHFFHSGCLQRWMDIKMECPTCRRPL 570
C H F S C+ WM K+ECP CR+ +
Sbjct: 82 CAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 36.2 bits (82), Expect = 0.058, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 523 CVICMTAI-DLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570
C ICM +++Q + T C H F S CL+ + CPTCR+ +
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 35.4 bits (80), Expect = 0.089, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCR 567
+C +C+ ++ + + + C H FH+ C+ W+ CP CR
Sbjct: 7 ECAVCLAELEDGEEAR--FLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 519 HTTDCVICMTAIDLMQRSNDCMVT--PCDHFFHSGCLQRWMDIKMECPTCRR 568
H D I A S +C V C+H FH C+ RW+ + CP R
Sbjct: 46 HIXDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 97
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 519 HTTDCVICMTAIDLMQRSNDCMVT--PCDHFFHSGCLQRWMDIKMECPTCRR 568
H D I A S +C V C+H FH C+ RW+ + CP R
Sbjct: 48 HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 99
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 519 HTTDCVICMTAIDLMQRSNDCMVT--PCDHFFHSGCLQRWMDIKMECPTCRR 568
H D I A S +C V C+H FH C+ RW+ + CP R
Sbjct: 46 HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 97
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 519 HTTDCVICMTAIDLMQRSNDCMVT--PCDHFFHSGCLQRWMDIKMECPTCRR 568
H D I A S +C V C+H FH C+ RW+ + CP R
Sbjct: 57 HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 108
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 519 HTTDCVICMTAIDLMQRSNDCMVT--PCDHFFHSGCLQRWMDIKMECPTCRR 568
H D I A S +C V C+H FH C+ RW+ + CP R
Sbjct: 40 HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 91
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 519 HTTDCVICMTAIDLMQRSNDCMVT--PCDHFFHSGCLQRWMDIKMECPTCRR 568
H D I A S +C V C+H FH C+ RW+ + CP R
Sbjct: 38 HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 89
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 523 CVIC----MTAIDLMQRSN---DCMVT--PCDHFFHSGCLQRWMDIKMECPTCRR 568
C IC M A Q N DC+V C+H FH+ C+ W+ CP C++
Sbjct: 18 CAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQ 72
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 519 HTTDCVICMTAIDLMQRSNDCMVT--PCDHFFHSGCLQRWMDIKMECPTCRR 568
H D I A S +C V C+H FH C+ RW+ + CP R
Sbjct: 30 HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 81
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRP 569
G+ ++ C IC+ D+ V PC H H C + + CP C P
Sbjct: 1 GSSGSSGCPICLE--DIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGP 52
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 32.3 bits (72), Expect = 0.75, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKME-CPTCR 567
C IC + D + PC H + CL W + + + CP CR
Sbjct: 30 CKICA------ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 69
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 32.0 bits (71), Expect = 0.88, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKME-CPTCR 567
C IC + D + PC H + CL W + + + CP CR
Sbjct: 27 CKICA------ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 66
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 530 IDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570
I L SN M PC H F C+ RW+ CP C+ P+
Sbjct: 10 ICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKME-CPTCR 567
C IC + D + PC H + CL W + + CP CR
Sbjct: 29 CKICA------ENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 68
>pdb|1BOR|A Chain A, Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1
Representative Structure At Ph 7.5, 30 C, In The
Presence Of Zinc
Length = 56
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 543 PCDHFFHSGCLQRWMDIKMECPTCRRPLP 571
PC H SGCL+ M+CP C+ P P
Sbjct: 23 PCLHTLCSGCLEA---SGMQCPICQAPWP 48
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 17/63 (26%)
Query: 522 DCVICMTAIDLMQRSNDCM------------VTPCDHFFHSGCLQRWM-----DIKMECP 564
DC+ICM + + +D +T C H FH CL D ++CP
Sbjct: 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86
Query: 565 TCR 567
+C+
Sbjct: 87 SCK 89
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKME-CPTCR 567
C IC + D + PC H + CL W + + + CP CR
Sbjct: 335 CKICA------ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKME-CPTCR 567
C IC + D + PC H + CL W + + + CP CR
Sbjct: 335 CKICA------ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKME-CPTCR 567
C IC + D + PC H + CL W + + + CP CR
Sbjct: 337 CKICA------ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKME-CPTCR 567
C IC + D + PC H + CL W + + + CP CR
Sbjct: 337 CKICA------ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 527 MTAIDLMQRSNDC-------MVTP-CDHFFHSGCLQRWMDIKMECPTC 566
M ID + R C M+ P C H + S C+++++ K +CPTC
Sbjct: 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKME-CPTCR 567
C IC + D + PC H + CL W + + CP CR
Sbjct: 341 CKICA------ENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 523 CVICMTAIDLMQRSNDCMVTP-CDHFFHSGCLQRWM-DIKMECPTCRRPL 570
C IC ++ D + P C C++RW+ + + +CP CR PL
Sbjct: 25 CFICX------EKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68
>pdb|1DV8|A Chain A, Crystal Structure Of The Carbohydrate Recognition Domain
Of The H1 Subunit Of The Asialoglycoprotein Receptor
Length = 128
Score = 28.5 bits (62), Expect = 9.4, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 53 SWGDEWLFVRKDENELGPYSEWNITGTYRGTWKFLDSTNSSSRFRDFR 100
SW +E FV ++ +GP + W G WK++D T+ + F+++R
Sbjct: 41 SW-EEQKFV---QHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWR 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,901,688
Number of Sequences: 62578
Number of extensions: 628309
Number of successful extensions: 1491
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1463
Number of HSP's gapped (non-prelim): 40
length of query: 573
length of database: 14,973,337
effective HSP length: 104
effective length of query: 469
effective length of database: 8,465,225
effective search space: 3970190525
effective search space used: 3970190525
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)