BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008227
(573 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P36096|TUL1_YEAST Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1
SV=1
Length = 758
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 163/348 (46%), Gaps = 64/348 (18%)
Query: 289 QVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFF 348
Q+ LL+ QM H+NT S K+S ++D L L+ A +V L+ +AF
Sbjct: 410 QIYLLLTQMHHTNTPSMVNKISFYCFSMINLVDGSLATLYFVAASVVPELYLPLVISAFS 469
Query: 349 KFVVFSIFEMRYLLAIWKASRPM-----------NNGEGWETMRRELSV---------LY 388
F++ SIFE+RYL++I+ + N G E R + LY
Sbjct: 470 CFILASIFEIRYLISIYASQVNEQNVGIINLLRGNTGTYDENRPRPAFIPDEGSIGGSLY 529
Query: 389 SRFYGILLGGILVMYEFHNFLRPI--------LLLMYSFWIPQIITNVVR---------- 430
RF+ +L+ ++ ++ R + + ++ S+WIPQI N V+
Sbjct: 530 GRFFFMLIIFTFLILSSTSWPRQLRMVFEYILIFILNSYWIPQIFRNAVKGIPSRRERAR 589
Query: 431 --------DSRKFLHPHYILGISVTRLAIPLYIFGCPHNFMRIEPDKNWCICLCVFIGLQ 482
++ L +++G ++ R +Y+F N R D ++ + L +++ Q
Sbjct: 590 SSIGGNRSQNKMPLLWSFVIGTTIIRSLPVVYVFTYSSNVFRHHKDVHFVVFLSLWLLFQ 649
Query: 483 ASILLLQHYLGSRWFIPRQILPEKYSYYRRFDQ--------GTY-HTTDCVICMTAIDLM 533
SIL Q LGSRWF+P+ +P+ YSY++ GT HT DC ICM+ + +
Sbjct: 650 ISILYSQDVLGSRWFLPKHTIPDGYSYFKPLSNEYISEHGGGTAEHTVDCAICMSDVPIY 709
Query: 534 QRS---------NDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572
+ MVTPC+H FH+ CL+ WM+ K++CP CR PLPP
Sbjct: 710 IEEIPETHKVDQHSYMVTPCNHVFHTSCLENWMNYKLQCPVCRSPLPP 757
>sp|O43085|DSC1_SCHPO DSC E3 ubiquitin ligase complex subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dsc1 PE=1 SV=2
Length = 695
Score = 135 bits (341), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 117/424 (27%), Positives = 180/424 (42%), Gaps = 88/424 (20%)
Query: 234 DHDRYHIEGL--MESPAVDDDGDCFSP------LLLNATSVNIEVYYNKAVNYTLMVTFV 285
+++ YH +G+ + P V G +SP N V N V ++ + F+
Sbjct: 272 ENEFYHPQGVSTQKMPEVFVSGLVYSPDCNVAFTFSNTKGPRNFVLENHLVRFSSLYIFI 331
Query: 286 SFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATA 345
Q+ +L+RQM N+ S ++S L I QA +DAY+ + L+ ++E + F +
Sbjct: 332 VLSQIFVLLRQMR-INSPSHVQRLSFLTIAMQAGLDAYIAIFFLSTNAVIEKGYLPFVSV 390
Query: 346 AFFKFVVFSIFEMRYLLAIWK---------ASRPM------------------------- 371
AF V +F MRYL I + A RP+
Sbjct: 391 AFLSLVPSVMFTMRYLALILRVQNSNMPPPAPRPVTNNSSNNNTNQSNASNENSPNAPSA 450
Query: 372 --NNGEGW---------------ETMRRELSVLYSRFYGILLGGIL---------VMYEF 405
+N E E +R+ S + RFY I+L + V+Y F
Sbjct: 451 ANDNTETTTVNPPQEDDQPMTQHERDQRDWSAVCLRFYFIILVVCIASLYSAFWPVIYRF 510
Query: 406 HNFLRPILLLMYSFWIPQIITNVVRDSRKFLHPHYILGISVTRLAIPLYIFGCPHNFMRI 465
+ F+ ++ YSFWIPQII NV + + + YILG SV RL +PL IF +
Sbjct: 511 Y-FISALIFTSYSFWIPQIIQNVKQGTSRSFTWTYILGASVLRLYLPLAIFIDSELILGF 569
Query: 466 EPDKNWCICLCVFIGLQASILLLQHYLGSRWFIPRQILPEK--YSYYRRFDQGTYH---- 519
P + + L +++ Q +LL+Q LG R+F+P++ Y Y+ Q
Sbjct: 570 PPKYFFALGLVLWMLFQVLVLLVQDTLGPRFFLPKKFFLSSPVYDYHPVIQQDDLEAFMR 629
Query: 520 -TTDCVICMTAIDL-----------MQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCR 567
C ICM I+L M + M+TPC H +H CL +WM+ + CP CR
Sbjct: 630 DANVCPICMQPIELVSTGSTLNPASMMVRRNYMLTPCHHLYHRQCLLQWMETRSICPVCR 689
Query: 568 RPLP 571
LP
Sbjct: 690 CHLP 693
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 514 DQGTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTC 566
+Q H C IC Q N ++TPC HFFH GCL++W+ ++ CP C
Sbjct: 528 EQLEQHNDICSICY------QDMNSAVITPCSHFFHPGCLKKWLYVQETCPLC 574
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 514 DQGTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTC 566
+Q H C IC Q N ++TPC HFFH GCL++W+ ++ CP C
Sbjct: 528 EQLEQHNDICSICY------QDMNSAVITPCSHFFHPGCLKKWLYVQETCPLC 574
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 514 DQGTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTC 566
+Q H C IC Q ++TPC HFFH+GCL++W+ ++ CP C
Sbjct: 528 EQLEKHNDICAICY------QDMKSAVITPCSHFFHAGCLKKWLYVQETCPLC 574
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 514 DQGTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTC 566
+Q H C IC Q ++TPC HFFH+GCL++W+ ++ CP C
Sbjct: 528 EQLEKHNDICAICY------QDMKSAVITPCSHFFHAGCLKKWLYVQDTCPLC 574
>sp|Q7ZWF4|RN145_DANRE RING finger protein 145 OS=Danio rerio GN=rnf145 PE=2 SV=1
Length = 685
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTC 566
H C IC Q ++TPC HFFH+ CL++W+ ++ CP C
Sbjct: 533 HNDICSICF------QDMKSAVITPCSHFFHAACLKKWLYVQETCPLC 574
>sp|Q9C919|ATL19_ARATH Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana
GN=ATL19 PE=3 SV=1
Length = 178
Score = 48.9 bits (115), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 514 DQGTYHTTDCVICMTAIDLMQRSNDCMVTP-CDHFFHSGCLQRWMDIKMECPTCRRPLP 571
++ + + +C IC++ + + +C V P C H +H+ C+ W+ + CPTCR+ LP
Sbjct: 121 EEKSLESRECAICLSGYVV---NEECRVFPVCRHIYHALCIDAWLKNHLTCPTCRKDLP 176
>sp|P87139|YDM9_SCHPO Uncharacterized RING finger protein C57A7.09 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC57A7.09 PE=1 SV=1
Length = 372
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 514 DQGTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWM-DIKMECPTCRRPLPP 572
D+ T T V C+ ++ + + + PC H FH C+ +W+ D + CPTC +PP
Sbjct: 309 DESTRRATFGVECVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCNTEVPP 368
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572
+C ICM ++ + ++D + PC H+FH C++ W+ + C CR P+ P
Sbjct: 395 ECTICM---EMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDP 442
>sp|O22755|ATL44_ARATH RING-H2 finger protein ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2
SV=1
Length = 185
Score = 47.8 bits (112), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572
+T+C IC+T D ++ C H FH C+ +W+ + CP+CRR L P
Sbjct: 99 STECAICLT--DFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTP 149
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 498 IPRQILPEKYSYYR------RFDQGTYHTTD--CVICMTAIDLMQRSNDCMVTPCDHFFH 549
I R P KY R + D+G TD C IC++ +++ D PC H FH
Sbjct: 261 IERFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTICLS---MLEDGEDVRRLPCMHLFH 317
Query: 550 SGCLQRWMDIKMECPTCR 567
C+ +W+ + +CP CR
Sbjct: 318 QLCVDQWLAMSKKCPICR 335
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 498 IPRQILPEKYSYYR------RFDQGTYHTTD--CVICMTAIDLMQRSNDCMVTPCDHFFH 549
I R P KY R + D+G TD C IC++ +++ D PC H FH
Sbjct: 262 IERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTICLS---MLEDGEDVRRLPCMHLFH 318
Query: 550 SGCLQRWMDIKMECPTCR 567
C+ +W+ + +CP CR
Sbjct: 319 QLCVDQWLAMSKKCPICR 336
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570
DC IC D MQ + PC H FH+ CL+ W++ CPTCR L
Sbjct: 340 DCAICW---DSMQAARKL---PCGHLFHNSCLRSWLEQDTSCPTCRMSL 382
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570
DC IC D MQ + PC H FH+ CL+ W++ CPTCR L
Sbjct: 340 DCAICW---DSMQAARKL---PCGHLFHNSCLRSWLEQDTSCPTCRMSL 382
>sp|Q8VYC8|RIN2_ARATH E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2
PE=1 SV=1
Length = 578
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKM----ECPTCRRPL 570
+C IC + +R + C+H FH GCL+ W+D + CPTCR+PL
Sbjct: 336 ECAICREPMAKAKRLH------CNHLFHLGCLRSWLDQGLNEVYSCPTCRKPL 382
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572
+C IC+ + + ++ PC H FH+ C+ W+ + CP CR LPP
Sbjct: 127 ECAICLNEFEDEETLR--LMPPCSHAFHASCIDVWLSSRSTCPVCRASLPP 175
>sp|B1AUE5|PEX10_MOUSE Peroxisome biogenesis factor 10 OS=Mus musculus GN=Pex10 PE=2 SV=1
Length = 324
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 514 DQGTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572
D+ T C +C+ + TPC H F C+ W + K ECP CR PP
Sbjct: 262 DRAVCRTPLCTLCL------EERRHSTATPCGHLFCWECITEWCNTKTECPLCREKFPP 314
>sp|Q8W4Q5|RIN3_ARATH E3 ubiquitin protein ligase RIN3 OS=Arabidopsis thaliana GN=RIN3
PE=1 SV=2
Length = 577
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKM----ECPTCRRPL 570
+C IC + +R + C+H FH GCL+ W+D + CPTCR+PL
Sbjct: 336 ECAICREPMAKAKRLH------CNHLFHLGCLRSWLDQGLNEVYSCPTCRKPL 382
>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2
SV=1
Length = 254
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 573
H T+C IC++ + ++T C H FHS C+ W ++ CP CR L P
Sbjct: 99 HGTECAICLS--EFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCRCELDPG 151
>sp|Q99MP8|BRAP_MOUSE BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1
Length = 591
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCR 567
C +C+ +D + N + T C+H FHS CLQRW D CP CR
Sbjct: 263 CTVCLERMD--ESVNGILTTLCNHSFHSQCLQRWDDTT--CPVCR 303
>sp|Q7Z569|BRAP_HUMAN BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2
Length = 592
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCR 567
C +C+ +D + N + T C+H FHS CLQRW D CP CR
Sbjct: 264 CTVCLERMD--ESVNGILTTLCNHSFHSQCLQRWDDTT--CPVCR 304
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 45.4 bits (106), Expect = 0.001, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 510 YRRFDQGTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD-IKMECPTCRR 568
YR D +DC++C++ ++ + C H FH CL+ W+ + CP CR
Sbjct: 64 YRYSDNAA---SDCIVCLSK---LKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRS 117
Query: 569 PLPP 572
PL P
Sbjct: 118 PLLP 121
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571
C +CM D + +D PC H FH CL W+++ CP CR LP
Sbjct: 216 CAVCM---DEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571
C +C+ + + + PC H FH+GC+ W++ CP CR LP
Sbjct: 79 CPVCLLEFEEQESVRE---MPCKHLFHTGCILPWLNKTNSCPLCRLELP 124
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570
C IC R +TPC+H+FH+ CL++W+ I+ CP C + +
Sbjct: 547 CAICYHEFTTSAR-----ITPCNHYFHALCLRKWLYIQDTCPMCHQKV 589
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570
C IC R +TPC+H+FH+ CL++W+ I+ CP C + +
Sbjct: 547 CAICYHEFTTSAR-----ITPCNHYFHALCLRKWLYIQDTCPMCHQKV 589
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570
C IC R +TPC+H+FH+ CL++W+ I+ CP C + +
Sbjct: 547 CAICYHEFTTSAR-----ITPCNHYFHALCLRKWLYIQDTCPMCHQKV 589
>sp|Q9EPZ8|RN103_RAT E3 ubiquitin-protein ligase RNF103 OS=Rattus norvegicus GN=Rnf103
PE=2 SV=1
Length = 682
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 516 GTYHTTDCVICMTAIDLMQRSNDCMVT--PCDHFFHSGCLQRWM-DIKMECPTCRRP 569
GT H T+CV+C+ + N C++ PC H FH C+ W+ + CP CR P
Sbjct: 611 GTLHCTECVVCLENFE-----NGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRWP 662
>sp|Q9R1W3|RN103_MOUSE E3 ubiquitin-protein ligase RNF103 OS=Mus musculus GN=Rnf103 PE=2
SV=2
Length = 683
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 516 GTYHTTDCVICMTAIDLMQRSNDCMVT--PCDHFFHSGCLQRWM-DIKMECPTCRRP 569
GT H T+CV+C+ + N C++ PC H FH C+ W+ + CP CR P
Sbjct: 612 GTLHCTECVVCLENFE-----NGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRWP 663
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571
C +CM D + + PC H +H CL W+++ CP CR LP
Sbjct: 224 CAVCM---DDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELP 269
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 503 LPEKYSYYRRFDQGTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKME 562
LP K Y+ D CVIC +D + D ++ PC H +HS C+ W+ I
Sbjct: 270 LPSKR--YKEGDNQNGTNESCVICR--LDY-EDDEDLILLPCKHSYHSECINNWLKINKV 324
Query: 563 CPTC 566
CP C
Sbjct: 325 CPVC 328
>sp|Q8L9W3|ATL23_ARATH E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana GN=ATL23
PE=1 SV=2
Length = 163
Score = 44.7 bits (104), Expect = 0.002, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572
+T+C +C+ I+ Q + +V C+H FH C W+ CP CR L P
Sbjct: 101 STECAVCLEDIESGQSTR--LVPGCNHGFHQLCADTWLSNHTVCPVCRAELAP 151
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 521 TDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 573
T+C +C++ L ++ N M+ C H FH C+ W+ + CP CR P+
Sbjct: 98 TECAVCLSL--LEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEPS 148
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCR 567
C+IC D++ S PC H FH+ CL+ W + CPTCR
Sbjct: 289 CIICRE--DMVNHSKKL---PCGHIFHTTCLRSWFQRQQTCPTCR 328
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 11/51 (21%)
Query: 528 TAIDLMQRSNDC------MVT-----PCDHFFHSGCLQRWMDIKMECPTCR 567
T DL N C MVT PC+H FHS CL+ W + CPTCR
Sbjct: 280 TPEDLQATDNVCIICREEMVTGAKKLPCNHIFHSSCLRSWFQRQQTCPTCR 330
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 512 RFDQGTYHT--TDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCR 567
RF+ + + T CV+CM + Q V PC+H FH+ C+ +W+ CP CR
Sbjct: 450 RFNPNNHQSEQTLCVVCMCDFESRQL---LRVLPCNHEFHAKCVDKWLKANRTCPICR 504
>sp|Q80U04|PJA2_MOUSE E3 ubiquitin-protein ligase Praja-2 OS=Mus musculus GN=Pja2 PE=1
SV=2
Length = 707
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 543 PCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 573
PC HFFH C+ W+ CP CRR PPA
Sbjct: 650 PCHHFFHKPCVSIWLQKSGTCPVCRRHFPPA 680
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 521 TDCVICMTAI---DLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571
+C IC + D MQ PC H FH CL+ W+D CP CR LP
Sbjct: 228 AECCICKENLVIGDKMQE------LPCKHTFHPPCLKPWLDEHNSCPICRHELP 275
>sp|O43164|PJA2_HUMAN E3 ubiquitin-protein ligase Praja-2 OS=Homo sapiens GN=PJA2 PE=1
SV=4
Length = 708
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 543 PCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 573
PC HFFH C+ W+ CP CRR PPA
Sbjct: 651 PCHHFFHKPCVSIWLQKSGTCPVCRRHFPPA 681
>sp|Q63364|PJA2_RAT E3 ubiquitin-protein ligase Praja-2 OS=Rattus norvegicus GN=Pja2
PE=2 SV=1
Length = 707
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 543 PCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 573
PC HFFH C+ W+ CP CRR PPA
Sbjct: 650 PCHHFFHKPCVSIWLQKSGTCPVCRRHFPPA 680
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 43.9 bits (102), Expect = 0.003, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCR 567
+C IC++ + Q + ++ C H FH C+ +W+ + CPTCR
Sbjct: 106 ECAICLSEFE--QGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCR 149
>sp|Q5R4R1|PJA2_PONAB E3 ubiquitin-protein ligase Praja-2 OS=Pongo abelii GN=PJA2 PE=2
SV=1
Length = 708
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 543 PCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 573
PC HFFH C+ W+ CP CRR PPA
Sbjct: 651 PCHHFFHKPCVSIWLQKSGTCPVCRRHFPPA 681
>sp|Q8SV35|Y733_ENCCU Uncharacterized RING finger protein ECU07_0330 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU07_0330 PE=4 SV=1
Length = 314
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRW-MDIKMECPTCR 567
+C ICM+ QR V PCDH FH GC+ +W + +CP CR
Sbjct: 268 ECAICMSNFIKNQR---LRVLPCDHRFHVGCVDKWLLGHSNKCPVCR 311
>sp|Q9M313|ATL68_ARATH RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2
SV=1
Length = 212
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 513 FDQGTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRR-PLP 571
F G T C IC+ + M+ M+ C H+FH CL W+ + CP CR PLP
Sbjct: 126 FHDGEGRETTCSICLC--EYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLP 183
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 521 TDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCR 567
DC IC+++ + + PC+H FHS C+ +W+ ++ CP C+
Sbjct: 305 ADCCICLSS---YEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCK 348
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1
Length = 148
Score = 43.9 bits (102), Expect = 0.004, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 525 ICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570
+C ++ + ++ + PC H FH CL +W++++ CP C P+
Sbjct: 77 LCAVCLEDFKPRDELGICPCKHAFHRKCLVKWLEVRKVCPLCNMPV 122
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 523 CVICMTAI----DLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCR 567
C+ICM + + + + + PC H H GCL+ WM+ CP CR
Sbjct: 320 CIICMDDMLPTTETTKMNRRAKMLPCGHMLHFGCLKSWMERSQTCPICR 368
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 523 CVICMTAIDLMQRSNDCMVT--PCDHFFHSGCLQRWMDIKMECPTCRRPLP 571
C IC D M +++ T PC H F CLQ+W++ CP CR+ +P
Sbjct: 107 CPIC---YDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 512 RFDQGTYHT--TDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCR 567
RF+ ++ + T CV+C + ++ Q V PC+H FH+ C+ +W+ CP CR
Sbjct: 342 RFNPDSHQSEQTLCVVCFSDFEVRQL---LRVLPCNHEFHAKCVDKWLKANRTCPICR 396
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.141 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,182,877
Number of Sequences: 539616
Number of extensions: 8871576
Number of successful extensions: 22094
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 170
Number of HSP's that attempted gapping in prelim test: 21746
Number of HSP's gapped (non-prelim): 494
length of query: 573
length of database: 191,569,459
effective HSP length: 123
effective length of query: 450
effective length of database: 125,196,691
effective search space: 56338510950
effective search space used: 56338510950
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (29.3 bits)