Query 008227
Match_columns 573
No_of_seqs 339 out of 1917
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 21:07:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0828 Predicted E3 ubiquitin 100.0 3E-102 6E-107 813.4 25.8 523 29-573 55-636 (636)
2 PF11145 DUF2921: Protein of u 99.9 7.3E-27 1.6E-31 268.7 23.5 328 119-499 515-908 (909)
3 COG5540 RING-finger-containing 99.9 2E-29 4.3E-34 253.2 -14.3 325 214-573 1-374 (374)
4 PF13639 zf-RING_2: Ring finge 99.3 5.5E-13 1.2E-17 100.0 2.1 44 521-567 1-44 (44)
5 KOG4628 Predicted E3 ubiquitin 99.3 2.6E-12 5.7E-17 134.6 4.8 49 521-572 230-279 (348)
6 KOG0317 Predicted E3 ubiquitin 99.2 2.2E-11 4.8E-16 123.5 6.0 146 418-572 122-285 (293)
7 PF12678 zf-rbx1: RING-H2 zinc 99.2 2.1E-11 4.5E-16 101.6 3.8 48 520-567 19-73 (73)
8 COG5243 HRD1 HRD ubiquitin lig 99.1 3.8E-11 8.3E-16 124.7 3.5 54 517-570 284-344 (491)
9 PHA02929 N1R/p28-like protein; 99.0 1.7E-10 3.7E-15 116.2 4.2 54 518-571 172-227 (238)
10 PLN03208 E3 ubiquitin-protein 98.7 6.3E-09 1.4E-13 101.3 3.8 49 517-571 15-79 (193)
11 cd00162 RING RING-finger (Real 98.7 9.2E-09 2E-13 75.2 3.7 44 522-570 1-45 (45)
12 PF13920 zf-C3HC4_3: Zinc fing 98.7 8.1E-09 1.7E-13 79.5 3.1 46 520-571 2-48 (50)
13 PF12861 zf-Apc11: Anaphase-pr 98.7 1.6E-08 3.4E-13 86.3 3.7 53 518-570 19-81 (85)
14 KOG1734 Predicted RING-contain 98.6 2E-06 4.3E-11 87.0 17.5 55 516-570 220-280 (328)
15 KOG0823 Predicted E3 ubiquitin 98.6 1.7E-08 3.6E-13 100.1 2.8 48 517-570 44-94 (230)
16 KOG0802 E3 ubiquitin ligase [P 98.6 1.3E-08 2.8E-13 114.3 1.9 51 518-569 289-339 (543)
17 PF13923 zf-C3HC4_2: Zinc fing 98.6 2.8E-08 6.1E-13 72.7 2.7 39 523-566 1-39 (39)
18 PHA02926 zinc finger-like prot 98.6 2.7E-08 5.8E-13 98.2 3.2 53 518-570 168-229 (242)
19 COG5194 APC11 Component of SCF 98.5 8.8E-08 1.9E-12 80.1 2.8 51 520-570 20-80 (88)
20 KOG0320 Predicted E3 ubiquitin 98.5 1.1E-07 2.4E-12 90.9 3.5 50 517-570 128-177 (187)
21 PF14634 zf-RING_5: zinc-RING 98.4 1.3E-07 2.9E-12 71.0 3.2 44 522-568 1-44 (44)
22 smart00504 Ubox Modified RING 98.4 2.7E-07 5.9E-12 73.6 3.8 45 521-571 2-46 (63)
23 PF00097 zf-C3HC4: Zinc finger 98.4 2.4E-07 5.1E-12 68.1 2.8 39 523-566 1-41 (41)
24 smart00184 RING Ring finger. E 98.4 3.2E-07 6.8E-12 64.7 3.3 38 523-566 1-39 (39)
25 PF15227 zf-C3HC4_4: zinc fing 98.3 2.8E-07 6.2E-12 68.8 2.8 38 523-566 1-42 (42)
26 COG5574 PEX10 RING-finger-cont 98.3 3.1E-07 6.7E-12 92.7 2.3 49 518-572 213-263 (271)
27 TIGR00599 rad18 DNA repair pro 98.3 5.1E-07 1.1E-11 97.3 3.7 50 516-571 22-71 (397)
28 COG5219 Uncharacterized conser 98.2 5.3E-07 1.2E-11 102.8 1.1 56 517-572 1466-1524(1525)
29 KOG0287 Postreplication repair 98.0 1.5E-06 3.2E-11 90.2 1.6 48 517-570 20-67 (442)
30 PF13445 zf-RING_UBOX: RING-ty 98.0 2.9E-06 6.3E-11 63.8 2.7 39 523-564 1-43 (43)
31 KOG2930 SCF ubiquitin ligase, 98.0 2.3E-06 4.9E-11 75.0 1.9 52 518-569 44-106 (114)
32 KOG1493 Anaphase-promoting com 98.0 1E-06 2.3E-11 73.2 -0.3 52 519-570 19-80 (84)
33 PF11793 FANCL_C: FANCL C-term 98.0 1.6E-06 3.4E-11 71.9 -0.2 51 520-570 2-65 (70)
34 smart00744 RINGv The RING-vari 97.9 7.5E-06 1.6E-10 63.3 2.9 42 522-567 1-49 (49)
35 KOG4265 Predicted E3 ubiquitin 97.8 8.6E-06 1.9E-10 85.6 2.7 48 518-571 288-336 (349)
36 KOG2164 Predicted E3 ubiquitin 97.8 7.8E-06 1.7E-10 89.2 2.3 46 520-571 186-236 (513)
37 KOG0804 Cytoplasmic Zn-finger 97.8 8.1E-06 1.8E-10 87.6 1.5 50 517-570 172-221 (493)
38 PF04564 U-box: U-box domain; 97.7 2.3E-05 4.9E-10 65.3 3.2 47 519-571 3-50 (73)
39 KOG2177 Predicted E3 ubiquitin 97.7 1.6E-05 3.5E-10 79.0 1.8 46 516-567 9-54 (386)
40 COG5432 RAD18 RING-finger-cont 97.6 2.4E-05 5.2E-10 79.9 2.4 48 517-570 22-69 (391)
41 KOG4445 Uncharacterized conser 97.4 4E-05 8.7E-10 78.7 0.8 53 515-570 110-185 (368)
42 PF14835 zf-RING_6: zf-RING of 97.2 8.2E-05 1.8E-09 60.4 0.3 44 519-569 6-49 (65)
43 KOG1039 Predicted E3 ubiquitin 97.2 0.00013 2.9E-09 77.5 1.9 53 518-570 159-220 (344)
44 KOG4159 Predicted E3 ubiquitin 97.2 0.00015 3.3E-09 78.5 2.3 48 518-571 82-129 (398)
45 KOG1785 Tyrosine kinase negati 97.1 0.00017 3.7E-09 76.6 1.1 46 519-570 368-415 (563)
46 KOG0311 Predicted E3 ubiquitin 97.0 9.8E-05 2.1E-09 77.5 -1.8 48 517-570 40-89 (381)
47 KOG0825 PHD Zn-finger protein 96.6 0.00051 1.1E-08 78.0 0.3 29 542-570 142-170 (1134)
48 KOG1941 Acetylcholine receptor 96.6 0.00072 1.6E-08 71.8 0.8 49 517-567 362-412 (518)
49 KOG4172 Predicted E3 ubiquitin 96.5 0.00066 1.4E-08 53.4 0.2 46 519-570 6-53 (62)
50 KOG1002 Nucleotide excision re 96.5 0.0019 4.2E-08 70.8 3.3 54 511-570 527-585 (791)
51 KOG0297 TNF receptor-associate 96.4 0.0014 3E-08 71.3 2.0 49 517-570 18-66 (391)
52 KOG2879 Predicted E3 ubiquitin 96.4 0.0039 8.4E-08 63.9 4.6 53 516-573 235-289 (298)
53 KOG3970 Predicted E3 ubiquitin 96.1 0.0043 9.2E-08 61.8 3.0 53 516-572 46-107 (299)
54 KOG0978 E3 ubiquitin ligase in 96.0 0.0022 4.8E-08 73.4 0.7 48 519-572 642-690 (698)
55 PF11789 zf-Nse: Zinc-finger o 96.0 0.0045 9.7E-08 49.4 2.1 44 517-565 8-53 (57)
56 PHA03096 p28-like protein; Pro 95.7 0.0053 1.2E-07 64.0 1.9 48 521-568 179-231 (284)
57 COG5152 Uncharacterized conser 95.7 0.0058 1.3E-07 59.9 2.0 69 494-569 170-239 (259)
58 PHA02825 LAP/PHD finger-like p 95.4 0.013 2.8E-07 55.8 3.5 47 517-570 5-58 (162)
59 PHA02862 5L protein; Provision 94.9 0.018 3.9E-07 54.0 2.7 49 520-570 2-52 (156)
60 KOG1813 Predicted E3 ubiquitin 94.9 0.013 2.8E-07 60.7 1.8 48 517-570 238-285 (313)
61 PF12906 RINGv: RING-variant d 94.9 0.017 3.7E-07 44.3 2.0 40 523-566 1-47 (47)
62 KOG1428 Inhibitor of type V ad 94.7 0.018 3.9E-07 69.3 2.7 51 518-571 3484-3544(3738)
63 PF05883 Baculo_RING: Baculovi 94.6 0.02 4.3E-07 53.3 2.1 40 519-561 25-70 (134)
64 KOG1814 Predicted E3 ubiquitin 94.6 0.02 4.3E-07 61.7 2.4 48 518-568 182-237 (445)
65 KOG2034 Vacuolar sorting prote 94.6 0.017 3.7E-07 67.3 1.9 37 518-558 815-851 (911)
66 PF10367 Vps39_2: Vacuolar sor 94.4 0.015 3.2E-07 50.8 0.8 33 518-554 76-108 (109)
67 KOG2660 Locus-specific chromos 94.0 0.015 3.1E-07 61.2 -0.2 50 516-570 11-60 (331)
68 KOG0827 Predicted E3 ubiquitin 93.7 0.0053 1.1E-07 65.5 -4.0 53 518-572 194-246 (465)
69 KOG0801 Predicted E3 ubiquitin 93.1 0.034 7.3E-07 53.1 0.6 30 518-550 175-204 (205)
70 PF14570 zf-RING_4: RING/Ubox 93.0 0.069 1.5E-06 41.3 2.1 45 523-569 1-46 (48)
71 KOG2114 Vacuolar assembly/sort 93.0 0.046 9.9E-07 63.5 1.6 44 519-570 839-882 (933)
72 KOG1571 Predicted E3 ubiquitin 92.8 0.056 1.2E-06 57.6 1.8 46 516-570 301-346 (355)
73 COG5222 Uncharacterized conser 92.7 0.043 9.4E-07 56.9 0.9 42 521-568 275-318 (427)
74 COG5236 Uncharacterized conser 92.2 0.1 2.2E-06 55.2 3.0 49 516-570 57-107 (493)
75 KOG3039 Uncharacterized conser 91.9 0.13 2.9E-06 52.2 3.2 50 519-570 220-269 (303)
76 KOG1952 Transcription factor N 91.2 0.11 2.5E-06 60.4 2.2 48 518-567 189-243 (950)
77 KOG3268 Predicted E3 ubiquitin 91.2 0.17 3.6E-06 49.2 2.9 53 518-570 163-227 (234)
78 PF10272 Tmpp129: Putative tra 91.0 0.19 4.2E-06 54.0 3.6 56 516-571 267-351 (358)
79 KOG4275 Predicted E3 ubiquitin 91.0 0.054 1.2E-06 56.1 -0.6 41 520-570 300-341 (350)
80 KOG1001 Helicase-like transcri 90.6 0.092 2E-06 61.0 0.7 43 521-570 455-499 (674)
81 KOG3002 Zn finger protein [Gen 90.5 0.14 3E-06 54.0 1.8 46 517-572 45-92 (299)
82 KOG4692 Predicted E3 ubiquitin 90.4 0.16 3.4E-06 54.0 2.1 47 518-570 420-466 (489)
83 COG5175 MOT2 Transcriptional r 89.7 0.19 4.2E-06 53.1 2.1 51 518-570 12-63 (480)
84 KOG3053 Uncharacterized conser 89.5 0.16 3.4E-06 52.0 1.2 52 516-569 16-80 (293)
85 PF04641 Rtf2: Rtf2 RING-finge 88.1 0.47 1E-05 48.9 3.6 51 517-570 110-160 (260)
86 KOG1609 Protein involved in mR 88.1 0.33 7.1E-06 50.4 2.5 49 520-570 78-133 (323)
87 PF08746 zf-RING-like: RING-li 87.3 0.29 6.3E-06 36.8 1.2 41 523-566 1-43 (43)
88 KOG1940 Zn-finger protein [Gen 87.0 0.35 7.7E-06 50.3 2.0 47 520-568 158-204 (276)
89 COG5183 SSM4 Protein involved 86.3 0.43 9.4E-06 55.4 2.3 49 518-570 10-65 (1175)
90 PF04193 PQ-loop: PQ loop repe 85.9 0.54 1.2E-05 37.2 2.1 45 417-461 14-58 (61)
91 KOG2932 E3 ubiquitin ligase in 85.6 0.35 7.6E-06 50.7 1.1 44 520-570 90-133 (389)
92 PF14447 Prok-RING_4: Prokaryo 85.5 0.49 1.1E-05 37.6 1.6 45 520-572 7-51 (55)
93 KOG1100 Predicted E3 ubiquitin 85.2 0.41 9E-06 47.9 1.3 37 523-569 161-198 (207)
94 KOG0826 Predicted E3 ubiquitin 84.6 2.2 4.7E-05 45.3 6.3 49 516-569 296-344 (357)
95 KOG3899 Uncharacterized conser 83.8 0.55 1.2E-05 48.9 1.5 27 544-570 325-364 (381)
96 KOG2817 Predicted E3 ubiquitin 82.7 3.2 6.9E-05 45.1 6.8 89 469-568 284-382 (394)
97 KOG0298 DEAD box-containing he 82.1 0.41 8.9E-06 58.2 -0.1 45 519-568 1152-1196(1394)
98 PF07800 DUF1644: Protein of u 81.3 1.5 3.2E-05 42.1 3.2 39 520-558 2-47 (162)
99 KOG0802 E3 ubiquitin ligase [P 80.9 0.93 2E-05 51.5 2.2 44 517-570 476-519 (543)
100 KOG0309 Conserved WD40 repeat- 80.2 0.99 2.1E-05 52.3 2.0 27 539-565 1043-1069(1081)
101 PF03854 zf-P11: P-11 zinc fin 79.5 0.67 1.5E-05 35.8 0.3 31 542-572 16-47 (50)
102 KOG4362 Transcriptional regula 75.2 0.8 1.7E-05 52.9 -0.5 48 518-571 19-69 (684)
103 KOG0825 PHD Zn-finger protein 74.0 2.2 4.8E-05 49.8 2.5 51 518-570 94-153 (1134)
104 smart00679 CTNS Repeated motif 73.9 2.2 4.8E-05 29.4 1.6 26 420-445 3-28 (32)
105 KOG3005 GIY-YIG type nuclease 73.6 2.1 4.4E-05 44.4 2.0 51 519-569 181-241 (276)
106 KOG1812 Predicted E3 ubiquitin 68.1 2.4 5.3E-05 46.2 1.2 41 518-560 144-184 (384)
107 KOG4718 Non-SMC (structural ma 67.2 2.8 6E-05 42.0 1.3 44 518-566 179-222 (235)
108 KOG1812 Predicted E3 ubiquitin 64.4 3.6 7.7E-05 45.0 1.6 48 518-566 304-351 (384)
109 KOG1829 Uncharacterized conser 62.1 2.8 6.1E-05 47.9 0.3 47 517-566 508-556 (580)
110 COG5220 TFB3 Cdk activating ki 60.2 2.9 6.3E-05 42.6 -0.0 48 518-566 8-59 (314)
111 KOG3842 Adaptor protein Pellin 57.4 8.6 0.00019 40.7 2.9 55 516-570 337-413 (429)
112 KOG2066 Vacuolar assembly/sort 55.7 4.6 9.9E-05 47.4 0.6 47 519-566 783-830 (846)
113 KOG2913 Predicted membrane pro 53.1 17 0.00037 37.8 4.2 65 420-492 24-88 (260)
114 PF02891 zf-MIZ: MIZ/SP-RING z 52.6 4.6 0.0001 31.3 -0.0 43 521-569 3-50 (50)
115 PF13901 DUF4206: Domain of un 49.2 11 0.00023 37.6 2.0 46 518-568 150-197 (202)
116 TIGR00951 2A43 Lysosomal Cysti 42.0 63 0.0014 32.6 6.2 35 420-454 19-53 (220)
117 KOG3161 Predicted E3 ubiquitin 41.3 11 0.00024 43.5 0.7 43 519-565 10-52 (861)
118 KOG0269 WD40 repeat-containing 41.1 20 0.00044 42.1 2.8 42 520-565 779-820 (839)
119 PF04710 Pellino: Pellino; In 40.8 9.1 0.0002 41.8 0.0 52 519-570 327-400 (416)
120 COG5109 Uncharacterized conser 40.1 56 0.0012 34.9 5.6 88 469-567 286-383 (396)
121 PF05290 Baculo_IE-1: Baculovi 38.4 24 0.00052 33.1 2.4 50 519-570 79-131 (140)
122 PF13717 zinc_ribbon_4: zinc-r 37.9 18 0.0004 26.1 1.2 29 521-549 3-36 (36)
123 PF14446 Prok-RING_1: Prokaryo 34.2 42 0.00091 26.8 2.8 34 519-554 4-37 (54)
124 PF06844 DUF1244: Protein of u 34.0 22 0.00048 29.4 1.2 11 548-558 12-22 (68)
125 PF06750 DiS_P_DiS: Bacterial 33.2 38 0.00082 29.6 2.6 38 520-572 33-70 (92)
126 KOG4185 Predicted E3 ubiquitin 31.5 8.9 0.00019 39.8 -1.8 50 519-568 206-264 (296)
127 PF06906 DUF1272: Protein of u 31.2 64 0.0014 26.0 3.3 46 521-570 6-51 (57)
128 smart00132 LIM Zinc-binding do 30.9 44 0.00096 22.9 2.3 38 522-571 1-38 (39)
129 PF01363 FYVE: FYVE zinc finge 30.8 24 0.00052 28.5 0.9 39 517-557 6-44 (69)
130 PF09723 Zn-ribbon_8: Zinc rib 29.7 18 0.0004 26.9 0.1 29 539-568 6-34 (42)
131 KOG2071 mRNA cleavage and poly 29.6 29 0.00062 39.8 1.6 40 516-556 509-556 (579)
132 KOG0824 Predicted E3 ubiquitin 29.1 23 0.00049 37.5 0.7 50 518-572 103-152 (324)
133 PF00412 LIM: LIM domain; Int 29.0 35 0.00075 26.1 1.6 37 523-571 1-37 (58)
134 PF10571 UPF0547: Uncharacteri 28.9 30 0.00064 23.4 1.0 11 561-571 1-11 (26)
135 PF13719 zinc_ribbon_5: zinc-r 28.9 27 0.00059 25.3 0.9 29 521-549 3-36 (37)
136 KOG2068 MOT2 transcription fac 28.7 41 0.00089 36.0 2.5 51 518-570 247-297 (327)
137 KOG3039 Uncharacterized conser 28.5 43 0.00093 34.6 2.5 35 518-558 41-75 (303)
138 PF04423 Rad50_zn_hook: Rad50 28.4 13 0.00028 29.0 -1.0 10 562-571 22-31 (54)
139 PLN02189 cellulose synthase 27.7 51 0.0011 40.4 3.3 52 519-570 33-86 (1040)
140 KOG1815 Predicted E3 ubiquitin 27.0 35 0.00076 38.0 1.7 38 517-559 67-104 (444)
141 PF07191 zinc-ribbons_6: zinc- 26.8 24 0.00051 29.6 0.3 39 521-570 2-40 (70)
142 PF10497 zf-4CXXC_R1: Zinc-fin 25.9 72 0.0016 28.6 3.2 24 545-568 37-69 (105)
143 PF11145 DUF2921: Protein of u 25.2 7.9E+02 0.017 30.3 12.5 24 238-261 169-192 (909)
144 PF07649 C1_3: C1-like domain; 25.1 43 0.00093 22.9 1.3 29 522-553 2-30 (30)
145 smart00249 PHD PHD zinc finger 24.0 39 0.00086 24.0 1.0 32 522-556 1-32 (47)
146 smart00064 FYVE Protein presen 23.3 61 0.0013 26.0 2.1 37 520-558 10-46 (68)
147 TIGR00622 ssl1 transcription f 23.2 99 0.0021 28.3 3.5 49 520-568 55-111 (112)
148 KOG1815 Predicted E3 ubiquitin 21.9 32 0.00069 38.3 0.2 42 519-560 225-268 (444)
149 CHL00204 ycf1 Ycf1; Provisiona 21.6 2.8E+02 0.0061 36.2 8.1 28 439-467 137-165 (1832)
150 PLN02638 cellulose synthase A 20.8 92 0.002 38.5 3.7 51 519-569 16-68 (1079)
151 cd00350 rubredoxin_like Rubred 20.5 70 0.0015 22.5 1.6 22 542-569 5-26 (33)
152 PF00628 PHD: PHD-finger; Int 20.3 50 0.0011 24.8 1.0 43 523-568 2-50 (51)
No 1
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-102 Score=813.39 Aligned_cols=523 Identities=50% Similarity=0.828 Sum_probs=460.2
Q ss_pred HHHHhhhcccccccccchhhhh---hccccccccccccCCCccCCccccccceEEeeeEE-----ecCC-CCcccccccc
Q 008227 29 LWFGFLVLKPVEGLRPLRERAR---ARSWGDEWLFVRKDENELGPYSEWNITGTYRGTWK-----FLDS-TNSSSRFRDF 99 (573)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~n~t~~~~g~w~-----~~~~-~~~s~~~~~~ 99 (573)
...|++-+++.+|.++||+... +.+|++||+|++...+-.++.+.|||++|++|||+ +.|+ .|+|+.|+|+
T Consensus 55 t~~g~i~l~~~ng~~~lr~t~~~~~~~~~~~ew~s~k~~~nv~~~~s~~nI~~s~~g~~k~n~~~fln~~ln~~s~f~d~ 134 (636)
T KOG0828|consen 55 TSDGLIELPVGNGDSHLRHTSVMTGNWNILPEWLSGKVSPNVTWHTSLRNIVMSQSGTWKANLYEFLNGNLNSSSKFLDF 134 (636)
T ss_pred hcceeEEeecCCCchhhccceeecCCceeccccccccccCCccccccceeEEeeeccchhhhHHHHhccccccchhhhhh
Confidence 5588999999999999999852 45899999999999999999999999999999999 8888 8999999999
Q ss_pred cccCCceEEEeeecCcCCCCceEEEEEEEEEeeccCCCCccceEEEEEeEEEeccCcceEEEecCCcCCCCCCCcccccC
Q 008227 100 RKSNGNSITELVSTPTKINGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSN 179 (573)
Q Consensus 100 ~~~~g~~~~~l~~~~~~~s~~~~v~~~~~~~d~~~~~~~~~~~~~~~~Gv~~wp~~q~~~~~~s~~~~~~~~~~~~~~s~ 179 (573)
+|.+||++.|++-+|+|+.||++|+|...++|.++ +.||-..| +--++.+ +.|++-..+
T Consensus 135 ~~~n~~SVy~~~~~~~ki~~I~~v~gst~fh~~Fd--------------~~h~~~~~-----~~yk~~~--~~D~~el~~ 193 (636)
T KOG0828|consen 135 EKENGNSVYELVFHPTKITGIHYVQGSTDFHPNFD--------------VIHWLLKD-----SPYKDAP--PLDGTELFP 193 (636)
T ss_pred HhhcCCceEEEEeccccccceEEEeeccccccccc--------------cchhhccc-----ccccccC--Cccchhccc
Confidence 99999999999999999999999999999999773 23666111 1122222 233333344
Q ss_pred ccc----cccccccccccccchHHHHHhhcCCCcccCCCcceEEEEEEecCCCCCC---CCCCCccceeeEeecCCcCCC
Q 008227 180 PYH----LLGVFSSQVFQESPREKIWRRKNSPIYEMEKHCNIEIAAQISRVSSTQH---EGDHDRYHIEGLMESPAVDDD 252 (573)
Q Consensus 180 ~~~----~~~~~~~q~~~~~~~~~~l~~~~~~~~~~~~~Ce~~i~~Q~~Pl~~~~~---~~e~~~~~i~G~i~SP~~~~s 252 (573)
++| .+|+||+|.+|+.+++++++.|+....++|++|++...+|++-+++..+ ..+++..+++|++++|++.+|
T Consensus 194 ~~~n~~~~~~i~s~qd~Qes~~~~~fk~e~~~~~eme~~~N~~t~~qi~~~~s~eN~~~~~~~n~~q~~pl~~vsgl~ys 273 (636)
T KOG0828|consen 194 LLQNRSLELGIFSSQDFQESPRDRVFKEEESPCSEMEKHCNIETAAQISTLKSSENEFYNGDKNSYQKEPLMEVSGLVYS 273 (636)
T ss_pred hhhcccchhcchhhhhhhhCccchhhhcccchHHHHHHhhhhHHHHHHHHhhhhhccccCCCcchhcCCceecccCcccC
Confidence 343 5899999999999999999999999999999999999999999998888 578888999999999999999
Q ss_pred CCcCcceeeeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008227 253 GDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAG 332 (573)
Q Consensus 253 pdC~~~l~~~~~g~~~e~~~~k~~~y~~~~~~v~~lQi~ll~~Qm~~~~TpS~~~riS~~ti~~~~i~D~~~~l~~l~~a 332 (573)
||||+++.++.+....|++++++.||.+++.+..+.|+++|++||.+ +|||.++|+|++||+||+++|+++|+++++++
T Consensus 274 pDC~v~l~l~ntkg~~~vl~n~aVr~tll~~~~~~~~~~~Ll~q~~~-~sps~v~rlSf~~i~mqa~mD~~Lall~lta~ 352 (636)
T KOG0828|consen 274 PDCFVPLTLNNTKGNVEVLYNKAVRYTLLYIFIVLSQIFLLLRQMRI-NSPSHVQRLSFLTIAMQAGMDAYLALLFLTAN 352 (636)
T ss_pred CCcCcceeeeccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-cCchhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999977766799999999999999999999999999999887 45999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hCCCCCCCChHHHHHHH--------HHHHHHHHHHH
Q 008227 333 ILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKA---------SRPMNNGEGWETMRREL--------SVLYSRFYGIL 395 (573)
Q Consensus 333 ~~~~~lfl~f~~~aFl~fil~~~fe~R~L~~Iwka---------~~~~~~~~~~~~~r~~~--------~~ly~rFy~~L 395 (573)
++.|++|++|+++||++|+++++||||||++|||+ .||.+++.+++++|++. +.+++|||+++
T Consensus 353 ~vve~lylpfvtaAF~~fV~~siFemRYLlsI~k~q~~~~~~~a~Rp~T~~~~~n~~r~~~~~~e~s~~g~l~grf~fm~ 432 (636)
T KOG0828|consen 353 AVVESLYLPFVTAAFFKFVVFSIFEMRYLLSIWKVQNSNMPPPATRPSTSNSSNNNTRQSNASNENSPWGILLGRFLFMY 432 (636)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCccccCcccccccccCCcchhhHHhHHHHH
Confidence 99999999999999999999999999999999994 46666777778888764 56777777665
Q ss_pred HHH-HHHHHH------HhhhHHH-HHHHHhhhhHHHhHHHhhh-CCccCCCccchhhhhhhhhcceeeehccCCCccCCC
Q 008227 396 LGG-ILVMYE------FHNFLRP-ILLLMYSFWIPQIITNVVR-DSRKFLHPHYILGISVTRLAIPLYIFGCPHNFMRIE 466 (573)
Q Consensus 396 i~~-~l~~~~------~~~~~~~-~l~ll~SfWvPQIirNi~r-n~R~~L~~~FviG~Si~RL~~plY~~~~p~N~l~~~ 466 (573)
++. ++++|+ +++++.+ ++|.+||||||||++|+.| .+|+||+|.||+|+|++|+++|+|+|+|++|+++++
T Consensus 433 lv~~~~~l~s~~wp~q~r~yf~~iLif~~~SfWIPQIv~Nvvrg~SR~Pl~w~yIlG~Tv~Rl~~plyVF~~s~n~~r~~ 512 (636)
T KOG0828|consen 433 LVVCIASLYSAFWPVQFRNYFIPILIFMYYSFWIPQIVANVVRGDSRKPLHWYYILGMTVTRLAIPLYVFGCSENFMRVE 512 (636)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCCcchhhhhhHhHHhhhcceEEEecchhhhccC
Confidence 433 333332 2344444 5667779999999999999 689999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHcCccccccccccccccccccccCC-----Cccccccccccccccccc-------
Q 008227 467 PDKNWCICLCVFIGLQASILLLQHYLGSRWFIPRQILPEKYSYYRRFDQG-----TYHTTDCVICMTAIDLMQ------- 534 (573)
Q Consensus 467 p~~~~~ivL~l~v~lQilIL~lQ~~~G~Rffipk~~~P~~y~y~~~~~~~-----~~~~~~CaICle~~e~~~------- 534 (573)
|++.|++.|++|+++|+.|+++|+++|+|||+||+.+|++|+||+.+.++ .+...+|+|||++++.-.
T Consensus 513 p~~~f~v~L~lwmlFQv~vLl~Qd~lGsR~FlPkk~lpe~YsY~r~l~~dh~~~~~~~t~dC~ICMt~I~l~~~~s~~~~ 592 (636)
T KOG0828|consen 513 PKYFFAVGLVLWMLFQVLVLLVQDYLGSRCFLPKKFLPEKYSYHRRLQQDHLEAFVRRTNDCVICMTPIDLRSTGSDCMV 592 (636)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHhhcccccccchhhCccccccccccccccccchhhccccceEeccccceeeccCcchh
Confidence 99999999999999999999999999999999999999999999999844 356789999999996532
Q ss_pred ----CCCCeEEcCCCCcccHhhHHHHHh-cCCCCCCCCCCCCCC
Q 008227 535 ----RSNDCMVTPCDHFFHSGCLQRWMD-IKMECPTCRRPLPPA 573 (573)
Q Consensus 535 ----~~~~~~vtPC~H~FH~~CL~~Wl~-~k~~CP~CR~~LPPl 573 (573)
..++||.|||+|+||+.||++||+ +|..||+||++|||+
T Consensus 593 ~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPpl 636 (636)
T KOG0828|consen 593 ASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPPL 636 (636)
T ss_pred hhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCCC
Confidence 125799999999999999999999 889999999999996
No 2
>PF11145 DUF2921: Protein of unknown function (DUF2921); InterPro: IPR021319 This eukaryotic family of proteins has no known function.
Probab=99.95 E-value=7.3e-27 Score=268.69 Aligned_cols=328 Identities=21% Similarity=0.263 Sum_probs=242.3
Q ss_pred CceEEEEEEEEEeeccCCCCccceEEEEEeEEEeccCcceEEEecCCcCCCCCCCcccccCccccccccccccccccchH
Q 008227 119 GVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQESPRE 198 (573)
Q Consensus 119 ~~~~v~~~~~~~d~~~~~~~~~~~~~~~~Gv~~wp~~q~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~q~~~~~~~~ 198 (573)
..-+|++.+++-- ..+.+-.+|-+||| +=| .-|+|-|--=.+ +
T Consensus 515 ~llNVSy~i~~~~----~~~~~~~~isaEGv-YD~-~~G~lclVGCR~-------------------------v------ 557 (909)
T PF11145_consen 515 RLLNVSYEISLSG----SISSNSSQISAEGV-YDP-KTGRLCLVGCRD-------------------------V------ 557 (909)
T ss_pred ceeEEEEEEEEcc----cccceEEEEEEEee-eeC-CCCeEEEEeccc-------------------------c------
Confidence 4789999999922 11223489999999 688 888888841111 1
Q ss_pred HHHHhhcCCCc-ccCCCcceEEEEEEecCCCCCCCCCCCccceeeEeecCCcCCCCCcCcceeeeeeechHH-HHHHHHH
Q 008227 199 KIWRRKNSPIY-EMEKHCNIEIAAQISRVSSTQHEGDHDRYHIEGLMESPAVDDDGDCFSPLLLNATSVNIE-VYYNKAV 276 (573)
Q Consensus 199 ~~l~~~~~~~~-~~~~~Ce~~i~~Q~~Pl~~~~~~~e~~~~~i~G~i~SP~~~~spdC~~~l~~~~~g~~~e-~~~~k~~ 276 (573)
+.+.+... |.+.||+|++.+|++|++ .+.+-.++|.|+|.|.+.||.+|.+++++..++.++ +..+.++
T Consensus 558 ---~~~~~~~~~~~~~DC~I~V~vq~pp~~------~~~~~~~kg~I~S~R~~~DpL~F~~~~l~~~~~~~~~q~~~~i~ 628 (909)
T PF11145_consen 558 ---RLNWNISSNESSMDCEILVTVQFPPLD------AKVNPTIKGSISSTRDKSDPLYFEPLDLSTYPIYYRKQAEESIW 628 (909)
T ss_pred ---ccCccccccCCCCCeeEEEEEEcCCCC------CCCCCcEEEEEEeccCCCCCccccceeeeeccceeccccchhhh
Confidence 11111111 567999999999999994 444568999999999999999999999988898887 6667788
Q ss_pred HH---HHHHHHHHHHHHHHHHHHhccc-CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 008227 277 NY---TLMVTFVSFLQVLLLIRQMEHS-NTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNA----------- 341 (573)
Q Consensus 277 ~y---~~~~~~v~~lQi~ll~~Qm~~~-~TpS~~~riS~~ti~~~~i~D~~~~l~~l~~a~~~~~lfl~----------- 341 (573)
|+ .+|.++...+.|.+.+.|+.|. +.|..++-||+.|+++|+++.+.+.++++ |+||..
T Consensus 629 R~d~E~i~~~~s~tl~~~~~~~QL~~~k~~~~~~P~iSlvML~v~aLGy~~pLv~n~------EaLf~~~~~~~~~~~~~ 702 (909)
T PF11145_consen 629 RMDLEGIMRVISLTLSCVFIGLQLFHVKKHPDVLPYISLVMLGVQALGYMIPLVLNF------EALFKSSHNRQNIFLDS 702 (909)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccchHhHHHHHHHHHhccchhhcCH------HHHcCcCCCCceEEeec
Confidence 88 8999999999999999999999 55999999999999999999999999987 444431
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCChH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHh----
Q 008227 342 -------FATAAFFKFVVFSIFEMRYLLAIWKASRPMNNGEGWE--TMRRELSVLYSRFY--GILLGGILVMYEFH---- 406 (573)
Q Consensus 342 -------f~~~aFl~fil~~~fe~R~L~~Iwka~~~~~~~~~~~--~~r~~~~~ly~rFy--~~Li~~~l~~~~~~---- 406 (573)
=.+..++.++. ++++.|+++++|++|.........| ..+|...++....| |++++.++-...-.
T Consensus 703 ~~w~e~~e~~vr~ltmvA-flL~lRL~qlvw~aR~~~~~~~~~~~~~sek~vl~~~l~ly~~G~li~l~~h~~~~~~~~~ 781 (909)
T PF11145_consen 703 GGWLEVNEVMVRLLTMVA-FLLQLRLLQLVWSARIRDGARKPLEPWPSEKKVLYICLPLYIAGGLIALIVHASKTNSRRA 781 (909)
T ss_pred CchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccccCCCCCCCccceEEEEEeHHHHHHHHHhhhhhhhccccccc
Confidence 12455555554 5999999999999997765433222 34444444445555 33433322211000
Q ss_pred ---------------h-h---HHHHHHHHhhhhHHHhHHHhhhCCcc-CCCccchhhhhhhhhcceeeehccCCCccCCC
Q 008227 407 ---------------N-F---LRPILLLMYSFWIPQIITNVVRDSRK-FLHPHYILGISVTRLAIPLYIFGCPHNFMRIE 466 (573)
Q Consensus 407 ---------------~-~---~~~~l~ll~SfWvPQIirNi~rn~R~-~L~~~FviG~Si~RL~~plY~~~~p~N~l~~~ 466 (573)
. | -.|++++++.|++|||+.|+.++++. ||+..|++|+|++|++|++|.+..+.+.-...
T Consensus 782 ~~~~~~~~~~~~~~~~~~~~l~~y~GLv~D~FLLPQii~N~~~~~~~~~Ls~~fY~G~T~~Rllph~Yd~~r~~~~~~~~ 861 (909)
T PF11145_consen 782 RREESYDSRISHQQHSWWEDLKSYAGLVLDGFLLPQIIGNAFWQSKVKPLSKSFYVGTTLVRLLPHVYDLYRAPNYVPYF 861 (909)
T ss_pred ccccccccccccccccHHHHHHHhhhHHHhhhhHHHHHHHHHhccCCcccccceeehHHHHHHHHHHHhhccccccCccc
Confidence 0 0 12899999999999999999988665 99999999999999999999888765542211
Q ss_pred --------------CCchhhHHHHHHHHHHHHHHHHHHHHcCccccc
Q 008227 467 --------------PDKNWCICLCVFIGLQASILLLQHYLGSRWFIP 499 (573)
Q Consensus 467 --------------p~~~~~ivL~l~v~lQilIL~lQ~~~G~Rffip 499 (573)
....|-+++.+-..+-++++++|+.+|.++++|
T Consensus 862 ~~~~~~ya~~~~dfys~awDi~Ip~~a~llA~~v~~QQr~~~~~~~~ 908 (909)
T PF11145_consen 862 DDESYVYANPRMDFYSTAWDIVIPCGAVLLAALVYLQQRWGGRCILP 908 (909)
T ss_pred ccccccccCccccccccccceeeehHHHHHHHHHHHHhhhCCeeecc
Confidence 123454555555555688999999999999886
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2e-29 Score=253.19 Aligned_cols=325 Identities=16% Similarity=0.100 Sum_probs=231.3
Q ss_pred CcceEEEEEEecCCCCCCCCCCCccce---eeEeecCCcCCCCCcCcceeeeeeechHHHHHHHHHHHHHHHHHHHHHHH
Q 008227 214 HCNIEIAAQISRVSSTQHEGDHDRYHI---EGLMESPAVDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQV 290 (573)
Q Consensus 214 ~Ce~~i~~Q~~Pl~~~~~~~e~~~~~i---~G~i~SP~~~~spdC~~~l~~~~~g~~~e~~~~k~~~y~~~~~~v~~lQi 290 (573)
.|+|.+.+|+.|.-+....+|.-+.++ ....-.|+...|+||+..+-.+ .++.+...+++..++...+..+.+|+
T Consensus 1 msyYqIivcilasisYiillevialdLGvldNif~ppr~a~std~a~rlg~~--Nv~lw~~~~s~~khl~~~ia~~~i~~ 78 (374)
T COG5540 1 MSYYQIIVCILASISYIILLEVIALDLGVLDNIFMPPRKAQSTDMARRLGNN--NVLLWNIMRSMLKHLDTRIASSDIDA 78 (374)
T ss_pred CceEEEEEEEecccchhhhhhhhccccCCccccccCccccCCchHHHhcCCc--chhHHHHHHHHHHHHhhhhhhhhhhh
Confidence 499999999999876666555433322 2233457788889999988873 23467777788888999999999999
Q ss_pred HHHHHHhcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008227 291 LLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRP 370 (573)
Q Consensus 291 ~ll~~Qm~~~~TpS~~~riS~~ti~~~~i~D~~~~l~~l~~a~~~~~lfl~f~~~aFl~fil~~~fe~R~L~~Iwka~~~ 370 (573)
|| |||+..+.++.+- ++.| +....|..+-... .+....++++-.++..+.++.|++..+...+..
T Consensus 79 yl---------tPs~v~~~~~~c~---NlvD--l~s~yf~~~d~~~-~yd~~~i~~~s~~~~~s~~~vR~~~~~~~~sv~ 143 (374)
T COG5540 79 YL---------TPSGVFMNRLRCR---NLVD--LISGYFGDGDDGR-EYDETRIPPPSRDLRGSGRKVRGSARQEVPSVE 143 (374)
T ss_pred ee---------CccceehhhhcCc---chhh--hhheeeecccccc-cccccccCCccchhhcccceeeeeecccCCchh
Confidence 88 9999999999998 7788 3344454444433 455566678878899999999998877665433
Q ss_pred CCC------------CCChHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---hhhHH--------HHHHHHhhhh
Q 008227 371 MNN------------GEGWETMRREL-------SVLYSRFYGILLGGILVMYEF---HNFLR--------PILLLMYSFW 420 (573)
Q Consensus 371 ~~~------------~~~~~~~r~~~-------~~ly~rFy~~Li~~~l~~~~~---~~~~~--------~~l~ll~SfW 420 (573)
|.+ .++....|+.+ ...+.++.+. +.|.+ ..+.+ ...+.++++|
T Consensus 144 E~nl~~~~~~rgn~t~~d~~rer~r~~fkgvi~Gs~r~~~~fr------lhymvapdkvdpr~~~v~~~~~lt~s~n~~w 217 (374)
T COG5540 144 ERNLVDRCNRRGNETEEDPTRERRRTRFKGVIRGSERNGETFR------LHYMVAPDKVDPRSEGVEDPVTLTTSINVTW 217 (374)
T ss_pred hhHHHHHHHHccCccccCccccchhccccceeeccccCCceEE------EEEEeccCCCCchhcCCccceEEEEEEeeee
Confidence 321 11111111111 2233333211 11111 11221 2346689999
Q ss_pred HHHhHHHh-------hh---C-CccCCCccchhhhhhhhhcceeeehccCCCccCCCCCchhhHHHHHHHHHHHHHHHHH
Q 008227 421 IPQIITNV-------VR---D-SRKFLHPHYILGISVTRLAIPLYIFGCPHNFMRIEPDKNWCICLCVFIGLQASILLLQ 489 (573)
Q Consensus 421 vPQIirNi-------~r---n-~R~~L~~~FviG~Si~RL~~plY~~~~p~N~l~~~p~~~~~ivL~l~v~lQilIL~lQ 489 (573)
.||+.+-- -+ | ...|+.|.|+.|+++.+.++-+|.+.+..|++....+..+.+.+.+|+..|+ .++.|
T Consensus 218 ~~l~~~y~~Ps~~~~a~~e~GdmfwP~l~~fv~s~~~~~~~p~i~~~~~~~~~~t~sk~~rf~~~l~~~~~f~~-gfyS~ 296 (374)
T COG5540 218 DGLGNTYQAPSQSAEAQDETGDMFWPRLSRFVGSRGFRVVFPRIPSQELRFLFLTQSKGSRFNIILEIQINFDV-GFYSS 296 (374)
T ss_pred ccccccccCchhhhhchhhhcccccchheeecCceeEEEEeechhHHHHHHHHhhhcCCceeEEEeehheehhh-heeec
Confidence 99998810 01 1 3349999999999999999999999999999999888899999999999998 77788
Q ss_pred HHHcCcccccccccccccccccccc----CCCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh-cCCCCC
Q 008227 490 HYLGSRWFIPRQILPEKYSYYRRFD----QGTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD-IKMECP 564 (573)
Q Consensus 490 ~~~G~Rffipk~~~P~~y~y~~~~~----~~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~-~k~~CP 564 (573)
+.. +|+..... + .+++. .+.....||+|||+++...+ ++|+|||+|.||..|+++||. ++..||
T Consensus 297 ~e~-----ip~~t~~g-~--lkpls~e~~~ea~~GveCaICms~fiK~d---~~~vlPC~H~FH~~Cv~kW~~~y~~~CP 365 (374)
T COG5540 297 SEA-----IPTTTTKG-S--LKPLSIERAVEADKGVECAICMSNFIKND---RLRVLPCDHRFHVGCVDKWLLGYSNKCP 365 (374)
T ss_pred ccc-----ccccccCc-c--eeechhHhHHhcCCCceEEEEhhhhcccc---eEEEeccCceechhHHHHHHhhhcccCC
Confidence 754 66654421 1 22221 23455699999999997544 799999999999999999997 899999
Q ss_pred CCCCCCCCC
Q 008227 565 TCRRPLPPA 573 (573)
Q Consensus 565 ~CR~~LPPl 573 (573)
+||.++||.
T Consensus 366 vCrt~iPPp 374 (374)
T COG5540 366 VCRTAIPPP 374 (374)
T ss_pred ccCCCCCCC
Confidence 999999995
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.32 E-value=5.5e-13 Score=100.02 Aligned_cols=44 Identities=32% Similarity=0.995 Sum_probs=38.6
Q ss_pred ccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCC
Q 008227 521 TDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCR 567 (573)
Q Consensus 521 ~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR 567 (573)
++|+||+++++.++ .+..++|+|.||.+||++|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~---~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGE---KVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTS---CEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCC---eEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999997644 778999999999999999999999999997
No 5
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.6e-12 Score=134.62 Aligned_cols=49 Identities=29% Similarity=0.849 Sum_probs=44.4
Q ss_pred ccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC-CCCCCCCCCCCC
Q 008227 521 TDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK-MECPTCRRPLPP 572 (573)
Q Consensus 521 ~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k-~~CP~CR~~LPP 572 (573)
..|+||+|+|+.++ +++++||+|.||..||+.|+... ..||+||+++++
T Consensus 230 ~~CaIClEdY~~Gd---klRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGD---KLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCC---eeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 69999999999876 88999999999999999999876 569999998764
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.2e-11 Score=123.55 Aligned_cols=146 Identities=23% Similarity=0.316 Sum_probs=89.3
Q ss_pred hhhHHHhHHHhhh----CCccCCCccchhh---hhhhhhcceeeehc--cCCCccCCCCCchhhHHHHHHHHHHHHHHHH
Q 008227 418 SFWIPQIITNVVR----DSRKFLHPHYILG---ISVTRLAIPLYIFG--CPHNFMRIEPDKNWCICLCVFIGLQASILLL 488 (573)
Q Consensus 418 SfWvPQIirNi~r----n~R~~L~~~FviG---~Si~RL~~plY~~~--~p~N~l~~~p~~~~~ivL~l~v~lQilIL~l 488 (573)
+...||=.+|+.+ -.|.-..+-|+-| ...-|+.-..|++. .+.+-++..+.+. ++..+.++|+.+.+-
T Consensus 122 ~~i~p~~~~~~l~~l~~v~~~h~~lFY~~g~~y~IskRltgI~yv~~~~~~~~~~~~~q~y~---iLg~I~L~ql~~slg 198 (293)
T KOG0317|consen 122 SEILPQARRNFLRGLFAVLRAHKALFYINGSFYSISKRLTGIRYVLARTLKGHEANASQPYK---ILGYILLIQLLLSLG 198 (293)
T ss_pred cccccHHHHHHhhhHHHHHHHhhheEEecCchHHHHHhhccceEEEEeccccccccccccee---eechhhHHHHHHhhh
Confidence 4677887777777 2444455555544 34457777888887 3555555444443 344455666443332
Q ss_pred HHHH---cCccccccccccccccccccc------cCCCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc
Q 008227 489 QHYL---GSRWFIPRQILPEKYSYYRRF------DQGTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI 559 (573)
Q Consensus 489 Q~~~---G~Rffipk~~~P~~y~y~~~~------~~~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~ 559 (573)
-..+ +-+---.....+++-..+... +...+.+..|.+||+..+.+ ..|||||+||..||.+|.+.
T Consensus 199 ~r~~~s~~q~~~s~~e~~~e~~~~~~~~~~s~~~~~i~~a~~kC~LCLe~~~~p------SaTpCGHiFCWsCI~~w~~e 272 (293)
T KOG0317|consen 199 SRLYASFLQHKRSSTESIEESKLNHSKLEDSNSLSSIPEATRKCSLCLENRSNP------SATPCGHIFCWSCILEWCSE 272 (293)
T ss_pred hHHHHHHHhcccccccccccccccccchhhccCCccCCCCCCceEEEecCCCCC------CcCcCcchHHHHHHHHHHcc
Confidence 2222 111111112222222222221 12245678999999987654 37999999999999999999
Q ss_pred CCCCCCCCCCCCC
Q 008227 560 KMECPTCRRPLPP 572 (573)
Q Consensus 560 k~~CP~CR~~LPP 572 (573)
+.+||+||++.+|
T Consensus 273 k~eCPlCR~~~~p 285 (293)
T KOG0317|consen 273 KAECPLCREKFQP 285 (293)
T ss_pred ccCCCcccccCCC
Confidence 9999999999987
No 7
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.16 E-value=2.1e-11 Score=101.62 Aligned_cols=48 Identities=29% Similarity=0.818 Sum_probs=38.1
Q ss_pred ccccccccccccccc-------CCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQ-------RSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCR 567 (573)
Q Consensus 520 ~~~CaICle~~e~~~-------~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR 567 (573)
+++|+||+++++.+. +...++..+|+|.||..||++|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 456999999994431 223456779999999999999999999999998
No 8
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.8e-11 Score=124.72 Aligned_cols=54 Identities=33% Similarity=0.824 Sum_probs=44.8
Q ss_pred Cccccccccccccc-cccc------CCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAI-DLMQ------RSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 517 ~~~~~~CaICle~~-e~~~------~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
..++..|+|||+++ +.+. .+.+.+.+||||++|.+||+.|++++++||+||+|+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 46788999999994 4432 123457899999999999999999999999999984
No 9
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.02 E-value=1.7e-10 Score=116.18 Aligned_cols=54 Identities=28% Similarity=0.693 Sum_probs=43.0
Q ss_pred cccccccccccccccccCC-C-CeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRS-N-DCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~-~-~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
..+.+|+||++++..++.. + -...++|+|.||.+||.+|++.+.+||+||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 4568999999997654311 1 1345689999999999999999999999999864
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.74 E-value=6.3e-09 Score=101.33 Aligned_cols=49 Identities=31% Similarity=0.796 Sum_probs=40.4
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc----------------CCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI----------------KMECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~----------------k~~CP~CR~~LP 571 (573)
..++.+|+||++.++ +..+|+|+|.||..||.+|+.. +..||+||+++.
T Consensus 15 ~~~~~~CpICld~~~------dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 15 SGGDFDCNICLDQVR------DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCCccCCccCCCcCC------CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 345789999999875 3468999999999999999852 357999999874
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.73 E-value=9.2e-09 Score=75.25 Aligned_cols=44 Identities=34% Similarity=1.058 Sum_probs=37.1
Q ss_pred cccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc-CCCCCCCCCCC
Q 008227 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI-KMECPTCRRPL 570 (573)
Q Consensus 522 ~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~-k~~CP~CR~~L 570 (573)
+|+||++.+.. ....++|+|.||.+|+++|++. +..||.||.++
T Consensus 1 ~C~iC~~~~~~-----~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE-----PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC-----ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 59999999822 4456779999999999999987 77899999864
No 12
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.72 E-value=8.1e-09 Score=79.55 Aligned_cols=46 Identities=35% Similarity=0.950 Sum_probs=39.3
Q ss_pred cccccccccccccccCCCCeEEcCCCCc-ccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHF-FHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~-FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
+..|.||++... +...+||+|. |+.+|+++|++.+..||+||+++-
T Consensus 2 ~~~C~iC~~~~~------~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR------DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS------SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCC------ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 578999999743 5678999999 999999999999999999999874
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.67 E-value=1.6e-08 Score=86.30 Aligned_cols=53 Identities=30% Similarity=0.699 Sum_probs=41.1
Q ss_pred ccccccccccccccccc-------CCCCeEEcCCCCcccHhhHHHHHhc---CCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQ-------RSNDCMVTPCDHFFHSGCLQRWMDI---KMECPTCRRPL 570 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~-------~~~~~~vtPC~H~FH~~CL~~Wl~~---k~~CP~CR~~L 570 (573)
..++.|.||+.+|+..- ++-.+..-.|+|.||..||.+|++. +.+||+||++.
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 34789999999997421 1123345579999999999999985 57899999874
No 14
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2e-06 Score=86.98 Aligned_cols=55 Identities=25% Similarity=0.678 Sum_probs=44.0
Q ss_pred CCcccccccccccccccccCC----CCeEEcCCCCcccHhhHHHHHh--cCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRS----NDCMVTPCDHFFHSGCLQRWMD--IKMECPTCRRPL 570 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~----~~~~vtPC~H~FH~~CL~~Wl~--~k~~CP~CR~~L 570 (573)
...++..|++|-+.++...++ ++.-.+.|+|+||+.||+.|.- .|++||.|++.+
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 345678999999998765432 2456789999999999999975 578999998865
No 15
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.7e-08 Score=100.14 Aligned_cols=48 Identities=35% Similarity=0.813 Sum_probs=40.8
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc---CCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI---KMECPTCRRPL 570 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~---k~~CP~CR~~L 570 (573)
+....||.||++.-+ +..+|.|||.||..||.+|+.. ++.||+||..+
T Consensus 44 ~~~~FdCNICLd~ak------dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK------DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred CCCceeeeeeccccC------CCEEeecccceehHHHHHHHhhcCCCeeCCcccccc
Confidence 456789999999754 4579999999999999999985 46799999875
No 16
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.3e-08 Score=114.26 Aligned_cols=51 Identities=31% Similarity=0.824 Sum_probs=43.8
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRP 569 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~ 569 (573)
..+..|+||+|++..+.. .....+||+|+||.+|+.+|++++++||+||..
T Consensus 289 ~~~~~C~IC~e~l~~~~~-~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~ 339 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHN-ITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTV 339 (543)
T ss_pred hcCCeeeeechhhccccc-cccceeecccchHHHHHHHHHHHhCcCCcchhh
Confidence 457899999999976542 235689999999999999999999999999984
No 17
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.59 E-value=2.8e-08 Score=72.72 Aligned_cols=39 Identities=33% Similarity=1.000 Sum_probs=32.8
Q ss_pred ccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCC
Q 008227 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTC 566 (573)
Q Consensus 523 CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~C 566 (573)
|+||++.+.. ....++|||.||.+|+++|++.+..||+|
T Consensus 1 C~iC~~~~~~-----~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC-----cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998754 23689999999999999999999999998
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.59 E-value=2.7e-08 Score=98.24 Aligned_cols=53 Identities=23% Similarity=0.692 Sum_probs=39.2
Q ss_pred ccccccccccccccccc--CCCCe-EEcCCCCcccHhhHHHHHhcC------CCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQ--RSNDC-MVTPCDHFFHSGCLQRWMDIK------MECPTCRRPL 570 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~--~~~~~-~vtPC~H~FH~~CL~~Wl~~k------~~CP~CR~~L 570 (573)
..+.+|+||||.+-.+. ..+.. ...+|+|.||..||.+|.+.+ ..||+||..+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 45689999999874321 11122 345799999999999999853 4599999875
No 19
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.47 E-value=8.8e-08 Score=80.11 Aligned_cols=51 Identities=31% Similarity=0.664 Sum_probs=39.2
Q ss_pred ccccccccccccccc--------CCCC--eEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQ--------RSND--CMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 520 ~~~CaICle~~e~~~--------~~~~--~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
.+.|+||+..+...- ..++ +.---|+|.||..||.+|++.+..||+||++.
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 478999999885421 1122 23346999999999999999999999999864
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.1e-07 Score=90.90 Aligned_cols=50 Identities=30% Similarity=0.682 Sum_probs=42.1
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
.+....|+|||+.++... ..-|.|||+||.+||+.-++....||+||..+
T Consensus 128 ~~~~~~CPiCl~~~sek~----~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkI 177 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKV----PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKI 177 (187)
T ss_pred cccccCCCceecchhhcc----ccccccchhHHHHHHHHHHHhCCCCCCccccc
Confidence 455689999999986532 24589999999999999999999999999765
No 21
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.45 E-value=1.3e-07 Score=71.02 Aligned_cols=44 Identities=30% Similarity=0.761 Sum_probs=37.8
Q ss_pred cccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCC
Q 008227 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRR 568 (573)
Q Consensus 522 ~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~ 568 (573)
+|.||.+.+... +...+|+|+|+|+.+|+++.......||+||+
T Consensus 1 ~C~~C~~~~~~~---~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEE---RRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCC---CCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 599999999322 36889999999999999999977789999985
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.39 E-value=2.7e-07 Score=73.63 Aligned_cols=45 Identities=16% Similarity=0.397 Sum_probs=39.9
Q ss_pred ccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 521 TDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 521 ~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
..|+||.+.++.+ +++||||+|+.+||.+|++.+..||.|+.++.
T Consensus 2 ~~Cpi~~~~~~~P------v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP------VILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC------EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 4699999998643 68899999999999999998899999998874
No 23
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.37 E-value=2.4e-07 Score=68.11 Aligned_cols=39 Identities=33% Similarity=1.042 Sum_probs=33.8
Q ss_pred ccccccccccccCCCCeEEcCCCCcccHhhHHHHHh--cCCCCCCC
Q 008227 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD--IKMECPTC 566 (573)
Q Consensus 523 CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~--~k~~CP~C 566 (573)
|+||++.++.+. ..++|+|.||.+|+.+|++ ....||.|
T Consensus 1 C~iC~~~~~~~~-----~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV-----ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE-----EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC-----EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999986542 5899999999999999998 45789998
No 24
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.36 E-value=3.2e-07 Score=64.69 Aligned_cols=38 Identities=37% Similarity=1.101 Sum_probs=32.7
Q ss_pred ccccccccccccCCCCeEEcCCCCcccHhhHHHHHh-cCCCCCCC
Q 008227 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD-IKMECPTC 566 (573)
Q Consensus 523 CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~-~k~~CP~C 566 (573)
|+||++.. +..+.++|+|.||..|+++|++ .+..||+|
T Consensus 1 C~iC~~~~------~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL------KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC------CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999983 2567899999999999999998 56779998
No 25
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.35 E-value=2.8e-07 Score=68.83 Aligned_cols=38 Identities=34% Similarity=0.870 Sum_probs=29.1
Q ss_pred ccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC----CCCCCC
Q 008227 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK----MECPTC 566 (573)
Q Consensus 523 CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k----~~CP~C 566 (573)
|+||++.++.+ +.++|||.|+.+||++|.+.. ..||.|
T Consensus 1 CpiC~~~~~~P------v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP------VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE------EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc------cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999754 589999999999999999753 469998
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.1e-07 Score=92.74 Aligned_cols=49 Identities=35% Similarity=0.866 Sum_probs=42.5
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHH-HHhcCCC-CCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQR-WMDIKME-CPTCRRPLPP 572 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~-Wl~~k~~-CP~CR~~LPP 572 (573)
..+..|+||++..+.+ ..|||||+||..||-. |-..+.. ||+||+..-|
T Consensus 213 ~~d~kC~lC~e~~~~p------s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVP------SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCc------ccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 5678999999997655 4799999999999999 9998887 9999998644
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.27 E-value=5.1e-07 Score=97.26 Aligned_cols=50 Identities=30% Similarity=0.633 Sum_probs=43.2
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
..+....|+||++.+..+ .++||+|.||..||..|+..+..||+||.++.
T Consensus 22 ~Le~~l~C~IC~d~~~~P------vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~ 71 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVP------VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ 71 (397)
T ss_pred ccccccCCCcCchhhhCc------cCCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence 455678999999998644 47999999999999999998889999999764
No 28
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.16 E-value=5.3e-07 Score=102.82 Aligned_cols=56 Identities=29% Similarity=0.768 Sum_probs=43.0
Q ss_pred CcccccccccccccccccCC-CCeEEcCCCCcccHhhHHHHHhc--CCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRS-NDCMVTPCDHFFHSGCLQRWMDI--KMECPTCRRPLPP 572 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~-~~~~vtPC~H~FH~~CL~~Wl~~--k~~CP~CR~~LPP 572 (573)
-.+.++||||...++.-++. ..-++..|.|.||..||.+|++. +.+||+||.++|-
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 45788999999988732211 12235569999999999999985 5789999999873
No 29
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.05 E-value=1.5e-06 Score=90.19 Aligned_cols=48 Identities=33% Similarity=0.797 Sum_probs=42.7
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
.+.-..|-||.+.|..+ |+|||+|.||.-||+..++.+..||+|+.++
T Consensus 20 lD~lLRC~IC~eyf~ip------~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~ 67 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIP------MITPCSHTFCSLCIRKFLSYKPQCPTCCVTV 67 (442)
T ss_pred hHHHHHHhHHHHHhcCc------eeccccchHHHHHHHHHhccCCCCCceeccc
Confidence 34567999999999754 7999999999999999999999999999875
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.04 E-value=2.9e-06 Score=63.84 Aligned_cols=39 Identities=38% Similarity=0.858 Sum_probs=23.6
Q ss_pred ccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC----CCCC
Q 008227 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK----MECP 564 (573)
Q Consensus 523 CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k----~~CP 564 (573)
|+||.| +..++ +..+++||||+|+.+||+++.+.+ ..||
T Consensus 1 CpIc~e-~~~~~--n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEE--NPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTS--S-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCC--CCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 75543 467899999999999999999843 4677
No 31
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.3e-06 Score=75.03 Aligned_cols=52 Identities=33% Similarity=0.751 Sum_probs=38.7
Q ss_pred ccccccccccccccc-------cc--CCCCeEE--cCCCCcccHhhHHHHHhcCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDL-------MQ--RSNDCMV--TPCDHFFHSGCLQRWMDIKMECPTCRRP 569 (573)
Q Consensus 518 ~~~~~CaICle~~e~-------~~--~~~~~~v--tPC~H~FH~~CL~~Wl~~k~~CP~CR~~ 569 (573)
-..+.|+||+.-+-. ++ ..+++.+ --|+|.||..||.+|++.+..||+|.++
T Consensus 44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 356789999987622 11 1123332 3699999999999999999999999765
No 32
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1e-06 Score=73.18 Aligned_cols=52 Identities=29% Similarity=0.714 Sum_probs=38.1
Q ss_pred cccccccccccccccc-----CCCC--eEEcCCCCcccHhhHHHHHhc---CCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQ-----RSND--CMVTPCDHFFHSGCLQRWMDI---KMECPTCRRPL 570 (573)
Q Consensus 519 ~~~~CaICle~~e~~~-----~~~~--~~vtPC~H~FH~~CL~~Wl~~---k~~CP~CR~~L 570 (573)
.++.|-||+-+|+..- .+++ ...--|.|.||..||.+|+.. +..||+||+..
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 3459999999997521 0112 222359999999999999985 46899999864
No 33
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.95 E-value=1.6e-06 Score=71.85 Aligned_cols=51 Identities=29% Similarity=0.636 Sum_probs=23.4
Q ss_pred cccccccccccccccCCCCeEE--cCCCCcccHhhHHHHHhc----C-------CCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMV--TPCDHFFHSGCLQRWMDI----K-------MECPTCRRPL 570 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~v--tPC~H~FH~~CL~~Wl~~----k-------~~CP~CR~~L 570 (573)
+.+|.||++.....++....+. ..|++.||..||.+|+.. + .+||.|++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 4789999998752221122333 369999999999999972 1 2599999875
No 34
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.91 E-value=7.5e-06 Score=63.25 Aligned_cols=42 Identities=33% Similarity=0.912 Sum_probs=32.9
Q ss_pred cccccccccccccCCCCeEEcCCC-----CcccHhhHHHHHhcC--CCCCCCC
Q 008227 522 DCVICMTAIDLMQRSNDCMVTPCD-----HFFHSGCLQRWMDIK--MECPTCR 567 (573)
Q Consensus 522 ~CaICle~~e~~~~~~~~~vtPC~-----H~FH~~CL~~Wl~~k--~~CP~CR 567 (573)
.|.||++. +.+ ++..+.||. |.+|.+||++|+..+ .+||+|+
T Consensus 1 ~CrIC~~~-~~~---~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDE---GDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCC---CCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999982 222 356789996 889999999999654 5899995
No 35
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=8.6e-06 Score=85.60 Aligned_cols=48 Identities=35% Similarity=0.872 Sum_probs=41.5
Q ss_pred cccccccccccccccccCCCCeEEcCCCCc-ccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHF-FHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~-FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
+...+|+|||++- ++..++||+|. -|.+|-+.-.-+...||+||+++-
T Consensus 288 ~~gkeCVIClse~------rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSES------RDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCC------cceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 5678999999974 36789999998 899999998877788999999874
No 36
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=7.8e-06 Score=89.25 Aligned_cols=46 Identities=26% Similarity=0.744 Sum_probs=38.6
Q ss_pred cccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC-----CCCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK-----MECPTCRRPLP 571 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k-----~~CP~CR~~LP 571 (573)
+..|+||+++-..+. .|.|||+||..||-+.++.. ..||+||..+-
T Consensus 186 ~~~CPICL~~~~~p~------~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPV------RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT 236 (513)
T ss_pred CCcCCcccCCCCccc------ccccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence 689999999977654 56799999999999998753 57999998763
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.78 E-value=8.1e-06 Score=87.65 Aligned_cols=50 Identities=30% Similarity=0.790 Sum_probs=40.8
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
..+-.+|++|+|.++... ..+..+.|+|.||..|+..|-. .+||+||.-.
T Consensus 172 ~tELPTCpVCLERMD~s~--~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q 221 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSST--TGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQ 221 (493)
T ss_pred cccCCCcchhHhhcCccc--cceeeeecccccchHHHhhccc--CcChhhhhhc
Confidence 346689999999997654 3567788999999999999954 5899999654
No 38
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.73 E-value=2.3e-05 Score=65.27 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=36.9
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc-CCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI-KMECPTCRRPLP 571 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~-k~~CP~CR~~LP 571 (573)
+...|+||.+-+.. .+++||||.|.+.||++|++. ..+||.||+++.
T Consensus 3 ~~f~CpIt~~lM~d------PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 3 DEFLCPITGELMRD------PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GGGB-TTTSSB-SS------EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred cccCCcCcCcHhhC------ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 35789999999864 468999999999999999998 899999998875
No 39
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.6e-05 Score=78.99 Aligned_cols=46 Identities=30% Similarity=0.695 Sum_probs=40.2
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCR 567 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR 567 (573)
...+...|+||++.+..+ +++||+|.||..|+..+......||.||
T Consensus 9 ~~~~~~~C~iC~~~~~~p------~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREP------VLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred hccccccChhhHHHhhcC------ccccccchHhHHHHHHhcCCCcCCcccC
Confidence 345678999999999765 5899999999999999998667899999
No 40
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.64 E-value=2.4e-05 Score=79.93 Aligned_cols=48 Identities=31% Similarity=0.611 Sum_probs=42.5
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
.+....|-||-+.+..+ ..|+|||.||.-||...+..+..||+||.+.
T Consensus 22 LDs~lrC~IC~~~i~ip------~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 22 LDSMLRCRICDCRISIP------CETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred chhHHHhhhhhheeecc------eecccccchhHHHHHHHhcCCCCCccccccH
Confidence 35568999999999765 4799999999999999999999999999863
No 41
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.43 E-value=4e-05 Score=78.70 Aligned_cols=53 Identities=32% Similarity=0.828 Sum_probs=42.9
Q ss_pred CCCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh-----------------------cCCCCCCCCCCC
Q 008227 515 QGTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD-----------------------IKMECPTCRRPL 570 (573)
Q Consensus 515 ~~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~-----------------------~k~~CP~CR~~L 570 (573)
++.....+|+||+-.|..++ ...+|+|.|.||..|+.+.+. .+..||+||..+
T Consensus 110 ~nn~p~gqCvICLygfa~~~---~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i 185 (368)
T KOG4445|consen 110 ENNHPNGQCVICLYGFASSP---AFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERI 185 (368)
T ss_pred cCCCCCCceEEEEEeecCCC---ceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhc
Confidence 34456789999999997654 688999999999999998875 124699999875
No 42
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.23 E-value=8.2e-05 Score=60.39 Aligned_cols=44 Identities=30% Similarity=0.818 Sum_probs=23.7
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRP 569 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~ 569 (573)
....|++|.+-++.+ ++...|.|+||..|+.+-+. ..||+|+.|
T Consensus 6 ~lLrCs~C~~~l~~p-----v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~P 49 (65)
T PF14835_consen 6 ELLRCSICFDILKEP-----VCLGGCEHIFCSSCIRDCIG--SECPVCHTP 49 (65)
T ss_dssp HTTS-SSS-S--SS------B---SSS--B-TTTGGGGTT--TB-SSS--B
T ss_pred HhcCCcHHHHHhcCC-----ceeccCccHHHHHHhHHhcC--CCCCCcCCh
Confidence 346899999998654 46788999999999988544 469999876
No 43
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00013 Score=77.45 Aligned_cols=53 Identities=30% Similarity=0.767 Sum_probs=38.8
Q ss_pred cccccccccccccccccC-CCCeEEcC-CCCcccHhhHHHHHh--c-----CCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQR-SNDCMVTP-CDHFFHSGCLQRWMD--I-----KMECPTCRRPL 570 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~-~~~~~vtP-C~H~FH~~CL~~Wl~--~-----k~~CP~CR~~L 570 (573)
..+.+|.|||+.+..... .+...++| |.|.||.+|+..|.. + ...||.||.+.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 457899999998754321 11223444 999999999999994 3 46799999764
No 44
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00015 Score=78.47 Aligned_cols=48 Identities=40% Similarity=0.807 Sum_probs=42.9
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
..+.+|.||+..+..+ .+|||||.||..||++-++++..||.||.+++
T Consensus 82 ~sef~c~vc~~~l~~p------v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP------VVTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred cchhhhhhhHhhcCCC------ccccccccccHHHHHHHhccCCCCcccccccc
Confidence 5678999999887644 47899999999999999999999999999886
No 45
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.09 E-value=0.00017 Score=76.55 Aligned_cols=46 Identities=33% Similarity=0.846 Sum_probs=38.4
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc--CCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI--KMECPTCRRPL 570 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~--k~~CP~CR~~L 570 (573)
.-.-|-||-|. ++++.+-||||..|+.||..|-.. .++||.||.++
T Consensus 368 TFeLCKICaen------dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 368 TFELCKICAEN------DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEI 415 (563)
T ss_pred hHHHHHHhhcc------CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence 45679999885 236789999999999999999854 58899999876
No 46
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=9.8e-05 Score=77.53 Aligned_cols=48 Identities=33% Similarity=0.660 Sum_probs=39.2
Q ss_pred CcccccccccccccccccCCCCeEEcC-CCCcccHhhHHHHHhc-CCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTP-CDHFFHSGCLQRWMDI-KMECPTCRRPL 570 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtP-C~H~FH~~CL~~Wl~~-k~~CP~CR~~L 570 (573)
...+..|+||++-+.. -|.++ |.|.||.+||..-++. ..+||+||+.+
T Consensus 40 ~~~~v~c~icl~llk~------tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKK------TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred hhhhhccHHHHHHHHh------hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 3567899999998853 34554 9999999999998875 68999999875
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.64 E-value=0.00051 Score=78.04 Aligned_cols=29 Identities=24% Similarity=0.661 Sum_probs=27.0
Q ss_pred cCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 542 TPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 542 tPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
-+|.|.||..|+..|-+...+||+||..+
T Consensus 142 k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF 170 (1134)
T KOG0825|consen 142 KHTAHYFCEECVGSWSRCAQTCPVDRGEF 170 (1134)
T ss_pred cccccccHHHHhhhhhhhcccCchhhhhh
Confidence 57999999999999999999999999865
No 48
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.57 E-value=0.00072 Score=71.83 Aligned_cols=49 Identities=33% Similarity=0.735 Sum_probs=40.3
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC--CCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK--MECPTCR 567 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k--~~CP~CR 567 (573)
.+-+.-|..|-|.+-..+ ....-+||.|+||..|+.+.+..+ .+||.||
T Consensus 362 ~e~~L~Cg~CGe~~Glk~--e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKN--ERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HHHhhhhhhhhhhhcCCc--ccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 345678999999885543 356789999999999999999765 6799998
No 49
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.00066 Score=53.35 Aligned_cols=46 Identities=26% Similarity=0.644 Sum_probs=33.4
Q ss_pred ccccccccccccccccCCCCeEEcCCCCc-ccHhhHHHHH-hcCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHF-FHSGCLQRWM-DIKMECPTCRRPL 570 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~-FH~~CL~~Wl-~~k~~CP~CR~~L 570 (573)
-+.||.||+|.-.. -..-.|||. .|-+|-.+-. ..+..||+||+++
T Consensus 6 ~~dECTICye~pvd------sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 6 WSDECTICYEHPVD------SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cccceeeeccCcch------HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 34899999996322 134569997 6777855544 4789999999976
No 50
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.47 E-value=0.0019 Score=70.83 Aligned_cols=54 Identities=20% Similarity=0.629 Sum_probs=42.7
Q ss_pred ccccCCCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh-----cCCCCCCCCCCC
Q 008227 511 RRFDQGTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD-----IKMECPTCRRPL 570 (573)
Q Consensus 511 ~~~~~~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~-----~k~~CP~CR~~L 570 (573)
..+..+.....+|.+|-++-+ ++.++.|+|.||+-|+.++.. .+.+||+|.-+|
T Consensus 527 ~n~~~enk~~~~C~lc~d~ae------d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 527 ANLPDENKGEVECGLCHDPAE------DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred cCCCccccCceeecccCChhh------hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 344456778899999998743 567899999999999977765 357899997655
No 51
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.44 E-value=0.0014 Score=71.29 Aligned_cols=49 Identities=33% Similarity=0.692 Sum_probs=42.2
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
.+.+..|++|+..+.++.. .+.|+|.||..|+..|+..+..||.||.++
T Consensus 18 ~~~~l~C~~C~~vl~~p~~-----~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~ 66 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQ-----TTTCGHRFCAGCLLESLSNHQKCPVCRQEL 66 (391)
T ss_pred CcccccCccccccccCCCC-----CCCCCCcccccccchhhccCcCCccccccc
Confidence 4567899999999987642 268999999999999999999999998865
No 52
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0039 Score=63.86 Aligned_cols=53 Identities=19% Similarity=0.492 Sum_probs=42.7
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc--CCCCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI--KMECPTCRRPLPPA 573 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~--k~~CP~CR~~LPPl 573 (573)
....+.+|++|-++-..| ....+|+|+||--|+..=..- ..+||.|-++.+|+
T Consensus 235 ~~t~~~~C~~Cg~~PtiP-----~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIP-----HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred cccCCceeeccCCCCCCC-----eeeccccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 456789999999975444 346789999999999987653 47999999999875
No 53
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.0043 Score=61.84 Aligned_cols=53 Identities=26% Similarity=0.637 Sum_probs=42.0
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc--------CCCCCCCCCCC-CC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI--------KMECPTCRRPL-PP 572 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~--------k~~CP~CR~~L-PP 572 (573)
+.+....|..|-..++.++ ...+-|-|.||.+|+++|-.. ..+||.|..++ ||
T Consensus 46 DsDY~pNC~LC~t~La~gd----t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 46 DSDYNPNCRLCNTPLASGD----TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred hcCCCCCCceeCCccccCc----ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 3445678999999987664 456779999999999999752 46899999887 55
No 54
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.0022 Score=73.40 Aligned_cols=48 Identities=27% Similarity=0.737 Sum_probs=39.1
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC-CCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK-MECPTCRRPLPP 572 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k-~~CP~CR~~LPP 572 (573)
....|+.|-.... +..++.|+|.||..|++.-+..+ ..||.|-+++-|
T Consensus 642 ~~LkCs~Cn~R~K------d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWK------DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchh------hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 5678999986542 45678899999999999999754 689999988754
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.95 E-value=0.0045 Score=49.41 Aligned_cols=44 Identities=16% Similarity=0.405 Sum_probs=29.3
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc--CCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI--KMECPT 565 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~--k~~CP~ 565 (573)
......|+|.+..++.|. ..+.|+|+|-++.|.++++. +..||+
T Consensus 8 ~~~~~~CPiT~~~~~~PV-----~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQPFEDPV-----KSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB-SSEE-----EESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred cEeccCCCCcCChhhCCc-----CcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 455689999999997653 45689999999999999943 467998
No 56
>PHA03096 p28-like protein; Provisional
Probab=95.67 E-value=0.0053 Score=63.98 Aligned_cols=48 Identities=25% Similarity=0.401 Sum_probs=34.3
Q ss_pred ccccccccccccccC-CCCeEEc-CCCCcccHhhHHHHHhcC---CCCCCCCC
Q 008227 521 TDCVICMTAIDLMQR-SNDCMVT-PCDHFFHSGCLQRWMDIK---MECPTCRR 568 (573)
Q Consensus 521 ~~CaICle~~e~~~~-~~~~~vt-PC~H~FH~~CL~~Wl~~k---~~CP~CR~ 568 (573)
.+|.|||+....... .+..-++ .|.|.||..|+..|...+ ..||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 789999998754321 2234445 499999999999999743 45666654
No 57
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.66 E-value=0.0058 Score=59.86 Aligned_cols=69 Identities=25% Similarity=0.389 Sum_probs=48.2
Q ss_pred CccccccccccccccccccccCC-CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCC
Q 008227 494 SRWFIPRQILPEKYSYYRRFDQG-TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRP 569 (573)
Q Consensus 494 ~Rffipk~~~P~~y~y~~~~~~~-~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~ 569 (573)
.-|-+.+.|-.+ ++-.+.+... ..-...|.||-++++.+ .+|.|||.||..|.-.=++...+|-+|-..
T Consensus 170 tGWkLn~EWnA~-~Ee~~v~~~~~e~IPF~C~iCKkdy~sp------vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 170 TGWKLNQEWNAE-YEEAPVISGPGEKIPFLCGICKKDYESP------VVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred cccccchhhcch-hhhcccccCCCCCCceeehhchhhccch------hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 334455555322 3333333322 23456899999999865 479999999999999999888999999653
No 58
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.45 E-value=0.013 Score=55.83 Aligned_cols=47 Identities=26% Similarity=0.742 Sum_probs=35.6
Q ss_pred CcccccccccccccccccCCCCeEEcCCCC-----cccHhhHHHHHhc--CCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDH-----FFHSGCLQRWMDI--KMECPTCRRPL 570 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H-----~FH~~CL~~Wl~~--k~~CP~CR~~L 570 (573)
...+.+|=||.++-+ + ...||.. .-|.+||++|++. +..||+|+.+.
T Consensus 5 s~~~~~CRIC~~~~~--~-----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 5 SLMDKCCWICKDEYD--V-----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCCeeEecCCCCC--C-----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 456789999998732 1 1357765 5699999999985 46899998864
No 59
>PHA02862 5L protein; Provisional
Probab=94.95 E-value=0.018 Score=54.00 Aligned_cols=49 Identities=29% Similarity=0.588 Sum_probs=31.2
Q ss_pred cccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc--CCCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI--KMECPTCRRPL 570 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~--k~~CP~CR~~L 570 (573)
++.|=||.++-+++. +.+...--...-|.+||++|++. +..||.|+.+.
T Consensus 2 ~diCWIC~~~~~e~~--~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 2 SDICWICNDVCDERN--NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CCEEEEecCcCCCCc--ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 468999999732210 00000000146899999999974 57899999863
No 60
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.013 Score=60.74 Aligned_cols=48 Identities=23% Similarity=0.475 Sum_probs=40.6
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
..-...|-||.+++..+ .+|.|+|.||..|-.+=++....|++|-++.
T Consensus 238 ~~~Pf~c~icr~~f~~p------Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 238 ELLPFKCFICRKYFYRP------VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred ccCCccccccccccccc------hhhcCCceeehhhhccccccCCcceeccccc
Confidence 44557899999999755 4899999999999999888889999997653
No 61
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.90 E-value=0.017 Score=44.27 Aligned_cols=40 Identities=30% Similarity=0.967 Sum_probs=26.9
Q ss_pred ccccccccccccCCCCeEEcCCCC-----cccHhhHHHHHhc--CCCCCCC
Q 008227 523 CVICMTAIDLMQRSNDCMVTPCDH-----FFHSGCLQRWMDI--KMECPTC 566 (573)
Q Consensus 523 CaICle~~e~~~~~~~~~vtPC~H-----~FH~~CL~~Wl~~--k~~CP~C 566 (573)
|-||+++-+.+ +..+.||+- .-|.+||++|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~----~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEED----EPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSS----S-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCC----CceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67999875432 257889873 5799999999984 4679988
No 62
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=94.74 E-value=0.018 Score=69.27 Aligned_cols=51 Identities=25% Similarity=0.666 Sum_probs=37.2
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC----------CCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK----------MECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k----------~~CP~CR~~LP 571 (573)
+.++-|.||..+--.. .....+-|+|+||..|.++-++.+ .+||+|+.++.
T Consensus 3484 D~DDmCmICFTE~L~A---AP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSA---APAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhCC---CcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 4567788888763222 145678899999999998766542 57999998763
No 63
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.63 E-value=0.02 Score=53.28 Aligned_cols=40 Identities=25% Similarity=0.555 Sum_probs=30.8
Q ss_pred ccccccccccccccccCCCCeEEcCCC------CcccHhhHHHHHhcCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCD------HFFHSGCLQRWMDIKM 561 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~------H~FH~~CL~~Wl~~k~ 561 (573)
...||+||++.+... +.++..+|+ |.||.+|+++|-+.+.
T Consensus 25 ~~~EC~IC~~~I~~~---~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~ 70 (134)
T PF05883_consen 25 CTVECQICFDRIDNN---DGVVYVTDGGTLNLEKMFCADCDKRWRRERN 70 (134)
T ss_pred cCeeehhhhhhhhcC---CCEEEEecCCeehHHHHHHHHHHHHHHhhcc
Confidence 478999999999772 245666676 8999999999954433
No 64
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.02 Score=61.68 Aligned_cols=48 Identities=29% Similarity=0.646 Sum_probs=36.4
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc--------CCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI--------KMECPTCRR 568 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~--------k~~CP~CR~ 568 (573)
....+|.||+++.. ++ .....+||+|+||.+|+...+.. ...||-|..
T Consensus 182 ~slf~C~ICf~e~~-G~--~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQM-GQ--HCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhc-Cc--ceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 45679999999843 32 24567999999999999999872 367987643
No 65
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=0.017 Score=67.32 Aligned_cols=37 Identities=30% Similarity=0.571 Sum_probs=31.5
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD 558 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~ 558 (573)
+.++.|.+|...+-.. ..++-||+|.||.+||.+-..
T Consensus 815 ep~d~C~~C~~~ll~~----pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK----PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcC----cceeeeccchHHHHHHHHHHH
Confidence 5789999999998643 578999999999999998764
No 66
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.40 E-value=0.015 Score=50.84 Aligned_cols=33 Identities=27% Similarity=0.690 Sum_probs=27.6
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHH
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQ 554 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~ 554 (573)
..+..|++|-..+..+ ...+.||||+||..|++
T Consensus 76 ~~~~~C~vC~k~l~~~----~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNS----VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCc----eEEEeCCCeEEeccccc
Confidence 4567899999998642 67889999999999975
No 67
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=93.97 E-value=0.015 Score=61.19 Aligned_cols=50 Identities=22% Similarity=0.518 Sum_probs=41.8
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
+......|.+|-..+.+.. .++-|=|.||++||-+.+.....||+|...+
T Consensus 11 ~~n~~itC~LC~GYliDAT-----TI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDAT-----TITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred hcccceehhhccceeecch-----hHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 4556789999999886543 3667999999999999999999999997644
No 68
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.0053 Score=65.47 Aligned_cols=53 Identities=28% Similarity=0.660 Sum_probs=43.5
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
.....|+||-+.+...- .++...-|+|.+|.+||++|+..+..||.||+.||-
T Consensus 194 slv~sl~I~~~slK~~y--~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 194 SLVGSLSICFESLKQNY--DKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HHHhhhHhhHHHHHHHH--HHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 34578999999886542 144457799999999999999999999999999873
No 69
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.034 Score=53.08 Aligned_cols=30 Identities=23% Similarity=0.608 Sum_probs=26.0
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccH
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHS 550 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~ 550 (573)
++..||+||+|+++.++ .+..+||-.+||+
T Consensus 175 ddkGECvICLEdL~~Gd---tIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGD---TIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCC---ceeccceEEEeec
Confidence 45679999999998876 7788999999996
No 70
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.01 E-value=0.069 Score=41.28 Aligned_cols=45 Identities=24% Similarity=0.609 Sum_probs=21.9
Q ss_pred ccccccccccccCCCCeEEcCCCCcccHhhHHHHHh-cCCCCCCCCCC
Q 008227 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD-IKMECPTCRRP 569 (573)
Q Consensus 523 CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~-~k~~CP~CR~~ 569 (573)
|++|+++++..+ .+..-=+|++..+..|..+-++ ....||-||++
T Consensus 1 cp~C~e~~d~~d--~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETD--KDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCC--TT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCC--CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 789999995543 2333345788888888777665 46789999986
No 71
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.95 E-value=0.046 Score=63.52 Aligned_cols=44 Identities=32% Similarity=0.746 Sum_probs=35.4
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
....|..|-..++.|. .--.|+|.||..|++ +....||.|+.++
T Consensus 839 q~skCs~C~~~LdlP~-----VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPF-----VHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccccce-----eeeecccHHHHHhhc---cCcccCCccchhh
Confidence 3458999999998764 345699999999999 5567899998643
No 72
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.056 Score=57.55 Aligned_cols=46 Identities=24% Similarity=0.620 Sum_probs=32.6
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
+......|+||.++.. +..-.||||.-| |...- +...+||+||+.+
T Consensus 301 ~~~~p~lcVVcl~e~~------~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI 346 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPK------SAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRI 346 (355)
T ss_pred ccCCCCceEEecCCcc------ceeeecCCcEEE--chHHH-hhCCCCchhHHHH
Confidence 3456689999999754 355799999966 55442 2335699999865
No 73
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.72 E-value=0.043 Score=56.89 Aligned_cols=42 Identities=33% Similarity=0.827 Sum_probs=33.9
Q ss_pred ccccccccccccccCCCCeEEcC-CCCcccHhhHHHHH-hcCCCCCCCCC
Q 008227 521 TDCVICMTAIDLMQRSNDCMVTP-CDHFFHSGCLQRWM-DIKMECPTCRR 568 (573)
Q Consensus 521 ~~CaICle~~e~~~~~~~~~vtP-C~H~FH~~CL~~Wl-~~k~~CP~CR~ 568 (573)
..|+.|-.-+.. .+.|| |+|.||.+||+.-+ +....||.|.+
T Consensus 275 LkCplc~~Llrn------p~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRN------PMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhC------cccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 789999887753 35676 79999999999776 46789999955
No 74
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.23 E-value=0.1 Score=55.16 Aligned_cols=49 Identities=24% Similarity=0.586 Sum_probs=37.8
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHH--HhcCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRW--MDIKMECPTCRRPL 570 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~W--l~~k~~CP~CR~~L 570 (573)
.+++...|.||-+.+.-. .++||+|.-|--|--+- +-.++.||+||.+-
T Consensus 57 tDEen~~C~ICA~~~TYs------~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 57 TDEENMNCQICAGSTTYS------ARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccceeEEecCCceEE------EeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 356678899999987533 47999999999997654 23468999999864
No 75
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.89 E-value=0.13 Score=52.16 Aligned_cols=50 Identities=16% Similarity=0.372 Sum_probs=41.4
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
....|++|...+..... -...-||||+|+.+|.++.+...+.||+|-.++
T Consensus 220 ~ryiCpvtrd~LtNt~~--ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~pl 269 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTP--CAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPL 269 (303)
T ss_pred cceecccchhhhcCccc--eEEeccCCcEeeHHHHHHhccccccccCCCCcC
Confidence 56789999999876541 233458999999999999999999999998775
No 76
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=91.24 E-value=0.11 Score=60.37 Aligned_cols=48 Identities=27% Similarity=0.773 Sum_probs=37.4
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC-------CCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK-------MECPTCR 567 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k-------~~CP~CR 567 (573)
....+|.||.+.+...+. -.....|-|+||..||.+|-+.. =.||.|+
T Consensus 189 ~~~yeCmIC~e~I~~t~~--~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAP--VWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred cCceEEEEeeeeccccCC--ceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 456899999999976653 33445588999999999998642 2599998
No 77
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.17 E-value=0.17 Score=49.19 Aligned_cols=53 Identities=28% Similarity=0.589 Sum_probs=33.5
Q ss_pred cccccccccccccccccC-CCCeEEcCCCCcccHhhHHHHHhc----C-------CCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQR-SNDCMVTPCDHFFHSGCLQRWMDI----K-------MECPTCRRPL 570 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~-~~~~~vtPC~H~FH~~CL~~Wl~~----k-------~~CP~CR~~L 570 (573)
+....|.||...--.+.. ...+--..||.-||.-||..|++. + .+||.|..|+
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 344556666543211111 112334679999999999999983 1 4799998775
No 78
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.04 E-value=0.19 Score=54.05 Aligned_cols=56 Identities=27% Similarity=0.592 Sum_probs=36.4
Q ss_pred CCccccccccccccccc----------ccCC------CCeEEcCCCCcccHhhHHHHHh-------------cCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDL----------MQRS------NDCMVTPCDHFFHSGCLQRWMD-------------IKMECPTC 566 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~----------~~~~------~~~~vtPC~H~FH~~CL~~Wl~-------------~k~~CP~C 566 (573)
+.++.+.|.-||..-.. ++.+ ..+..--|+-..|.+|+.+|+- .|.+||+|
T Consensus 267 ~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtC 346 (358)
T PF10272_consen 267 SGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTC 346 (358)
T ss_pred CccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCC
Confidence 34667789999996311 0000 1222333667789999999985 34589999
Q ss_pred CCCCC
Q 008227 567 RRPLP 571 (573)
Q Consensus 567 R~~LP 571 (573)
|+++.
T Consensus 347 Ra~FC 351 (358)
T PF10272_consen 347 RAKFC 351 (358)
T ss_pred cccce
Confidence 99864
No 79
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.98 E-value=0.054 Score=56.12 Aligned_cols=41 Identities=39% Similarity=0.882 Sum_probs=31.4
Q ss_pred cccccccccccccccCCCCeEEcCCCCc-ccHhhHHHHHhcCCCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHF-FHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~-FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
..-|+|||+.- .++..++|||. -|.+|=.. -..||+||+.+
T Consensus 300 ~~LC~ICmDaP------~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAP------RDCVFLECGHMVTCTKCGKR----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCC------cceEEeecCcEEeehhhccc----cccCchHHHHH
Confidence 67899999863 37889999997 57888443 24899999753
No 80
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.60 E-value=0.092 Score=60.97 Aligned_cols=43 Identities=35% Similarity=0.799 Sum_probs=35.5
Q ss_pred ccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc--CCCCCCCCCCC
Q 008227 521 TDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI--KMECPTCRRPL 570 (573)
Q Consensus 521 ~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~--k~~CP~CR~~L 570 (573)
..|.||++ .+ ...+++|+|.||.+|+..-.+. ...||.||..+
T Consensus 455 ~~c~ic~~-~~------~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LD------SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cc------cceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 89999999 22 5578999999999999998864 35799999754
No 81
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.54 E-value=0.14 Score=54.01 Aligned_cols=46 Identities=28% Similarity=0.743 Sum_probs=36.4
Q ss_pred CcccccccccccccccccCCCCeEEcCC--CCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPC--DHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC--~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
..+-.||+||.+.+..+ +..| ||+-|..|=. +....||.||.++++
T Consensus 45 ~~~lleCPvC~~~l~~P-------i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPP-------IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred chhhccCchhhccCccc-------ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 34567999999999765 3557 5999999965 356789999999875
No 82
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.37 E-value=0.16 Score=53.98 Aligned_cols=47 Identities=21% Similarity=0.513 Sum_probs=39.9
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
.++..|+||...-. ..+.+||+|.=|..||.+-|...+.|=.|+..+
T Consensus 420 sEd~lCpICyA~pi------~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv 466 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI------NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTV 466 (489)
T ss_pred cccccCcceecccc------hhhccCCCCchHHHHHHHHHhcCCeeeEeccee
Confidence 46789999988521 447899999999999999999999999998764
No 83
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.71 E-value=0.19 Score=53.07 Aligned_cols=51 Identities=22% Similarity=0.619 Sum_probs=35.9
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh-cCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD-IKMECPTCRRPL 570 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~-~k~~CP~CR~~L 570 (573)
++++-|+.|||+++..++ +..--|||--.|.-|-..--+ .+..||-||+..
T Consensus 12 deed~cplcie~mditdk--nf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 12 DEEDYCPLCIEPMDITDK--NFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cccccCcccccccccccC--CcccCCcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 344559999999998763 555678898777777433221 356899999853
No 84
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.46 E-value=0.16 Score=51.96 Aligned_cols=52 Identities=31% Similarity=0.741 Sum_probs=37.4
Q ss_pred CCcccccccccccccccccCCCCeEEcCCC-----CcccHhhHHHHHhcCC--------CCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCD-----HFFHSGCLQRWMDIKM--------ECPTCRRP 569 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~-----H~FH~~CL~~Wl~~k~--------~CP~CR~~ 569 (573)
+.+.+.-|=||.+.=+++. ..-=+-||. |--|.+||..|.+.|. .||-|+.+
T Consensus 16 ~~e~eR~CWiCF~TdeDn~--~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTE 80 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNR--LAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTE 80 (293)
T ss_pred ccccceeEEEEeccCcccc--hhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcch
Confidence 4556778999999744322 122356775 7799999999998643 59999875
No 85
>PF04641 Rtf2: Rtf2 RING-finger
Probab=88.10 E-value=0.47 Score=48.91 Aligned_cols=51 Identities=18% Similarity=0.421 Sum_probs=39.5
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
......|+|+..++.... +-+.+-||||+|...||++-- ....||+|-.++
T Consensus 110 ~~~~~~CPvt~~~~~~~~--~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f 160 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKH--KFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPF 160 (260)
T ss_pred CCceeECCCCCcccCCce--eEEEEcCCCCEeeHHHHHhhc-ccccccccCCcc
Confidence 456779999999984332 345567999999999999973 356799998875
No 86
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.07 E-value=0.33 Score=50.39 Aligned_cols=49 Identities=24% Similarity=0.757 Sum_probs=37.7
Q ss_pred cccccccccccccccCCCCeEEcCCC-----CcccHhhHHHHHhc--CCCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCD-----HFFHSGCLQRWMDI--KMECPTCRRPL 570 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~-----H~FH~~CL~~Wl~~--k~~CP~CR~~L 570 (573)
..+|=||.++.+.... .....||. +..|..|++.|... +..|..|....
T Consensus 78 ~~~cRIc~~~~~~~~~--~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~ 133 (323)
T KOG1609|consen 78 GPICRICHEEDEESNG--LLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF 133 (323)
T ss_pred CCcEEEEecccccccc--cccccCccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence 5789999998754321 15678887 55899999999984 57899998754
No 87
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=87.29 E-value=0.29 Score=36.83 Aligned_cols=41 Identities=27% Similarity=0.829 Sum_probs=22.9
Q ss_pred ccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCC--CCCCC
Q 008227 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKM--ECPTC 566 (573)
Q Consensus 523 CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~--~CP~C 566 (573)
|.+|.+....++. .-...|+=.+|..|++.+++.+. .||.|
T Consensus 1 C~~C~~iv~~G~~---C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQR---CSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE----SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeecc---CCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6788887765541 11124888999999999998765 69988
No 88
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=86.98 E-value=0.35 Score=50.28 Aligned_cols=47 Identities=30% Similarity=0.692 Sum_probs=38.8
Q ss_pred cccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRR 568 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~ 568 (573)
...|+||.+.+-... .....++|+|.-|..|++.-.....+||+|..
T Consensus 158 ~~ncPic~e~l~~s~--~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSF--EDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhcccc--ccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 344999999886544 25568999999999999998877799999976
No 89
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.28 E-value=0.43 Score=55.43 Aligned_cols=49 Identities=29% Similarity=0.654 Sum_probs=36.3
Q ss_pred cccccccccccccccccCCCCeEEcCCCCc-----ccHhhHHHHHhc--CCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHF-----FHSGCLQRWMDI--KMECPTCRRPL 570 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~-----FH~~CL~~Wl~~--k~~CP~CR~~L 570 (573)
+++..|-||..+=. ++ +..--||.+. -|.+||-+|+.. +..|-+|+.+.
T Consensus 10 ~d~~~CRICr~e~~-~d---~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 10 EDKRSCRICRTEDI-RD---DPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred ccchhceeecCCCC-CC---CcCcccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 44589999998732 21 4456788754 899999999985 46799998764
No 90
>PF04193 PQ-loop: PQ loop repeat
Probab=85.86 E-value=0.54 Score=37.18 Aligned_cols=45 Identities=24% Similarity=0.211 Sum_probs=35.8
Q ss_pred hhhhHHHhHHHhhhCCccCCCccchhhhhhhhhcceeeehccCCC
Q 008227 417 YSFWIPQIITNVVRDSRKFLHPHYILGISVTRLAIPLYIFGCPHN 461 (573)
Q Consensus 417 ~SfWvPQIirNi~rn~R~~L~~~FviG~Si~RL~~plY~~~~p~N 461 (573)
-.-++|||++|.++.+.+.++..+.....+.-++.-+|.+....|
T Consensus 14 ~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~ 58 (61)
T PF04193_consen 14 IISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYP 58 (61)
T ss_pred HHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344799999999999999999999888888887776666654433
No 91
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=85.61 E-value=0.35 Score=50.68 Aligned_cols=44 Identities=27% Similarity=0.618 Sum_probs=32.8
Q ss_pred cccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
...|.-|=-.+..-. +..||.|+||.+|... +..+.||.|-.++
T Consensus 90 VHfCd~Cd~PI~IYG-----RmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYG-----RMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eEeecccCCcceeee-----cccccchhhhhhhhhc--CccccCcCcccHH
Confidence 457878877765432 4689999999999765 3467899996654
No 92
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=85.50 E-value=0.49 Score=37.59 Aligned_cols=45 Identities=27% Similarity=0.573 Sum_probs=32.0
Q ss_pred cccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
...|..|...-. +-.++||+|.-+..|...+ .-.-||.|-+++.+
T Consensus 7 ~~~~~~~~~~~~------~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGT------KGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccccc------ccccccccceeeccccChh--hccCCCCCCCcccC
Confidence 356666666422 3358999999999996653 33679999988753
No 93
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.18 E-value=0.41 Score=47.88 Aligned_cols=37 Identities=30% Similarity=0.774 Sum_probs=27.7
Q ss_pred ccccccccccccCCCCeEEcCCCCc-ccHhhHHHHHhcCCCCCCCCCC
Q 008227 523 CVICMTAIDLMQRSNDCMVTPCDHF-FHSGCLQRWMDIKMECPTCRRP 569 (573)
Q Consensus 523 CaICle~~e~~~~~~~~~vtPC~H~-FH~~CL~~Wl~~k~~CP~CR~~ 569 (573)
|-.|-+. ...+..+||+|. +|..|=+. ..+||+|+.+
T Consensus 161 Cr~C~~~------~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~ 198 (207)
T KOG1100|consen 161 CRKCGER------EATVLLLPCRHLCLCGICDES----LRICPICRSP 198 (207)
T ss_pred ceecCcC------CceEEeecccceEeccccccc----CccCCCCcCh
Confidence 8888775 125778999865 88889554 4569999875
No 94
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=84.62 E-value=2.2 Score=45.30 Aligned_cols=49 Identities=14% Similarity=0.278 Sum_probs=38.4
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRP 569 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~ 569 (573)
.......|++|+.....+ ..+.--|-+||-.|+-+.+.....||+--.|
T Consensus 296 l~~~~~~CpvClk~r~Np-----tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNP-----TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred CCCccccChhHHhccCCC-----ceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 345678999999986433 3445569999999999999999999986443
No 95
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.76 E-value=0.55 Score=48.86 Aligned_cols=27 Identities=30% Similarity=0.810 Sum_probs=22.3
Q ss_pred CCCcccHhhHHHHHh-------------cCCCCCCCCCCC
Q 008227 544 CDHFFHSGCLQRWMD-------------IKMECPTCRRPL 570 (573)
Q Consensus 544 C~H~FH~~CL~~Wl~-------------~k~~CP~CR~~L 570 (573)
|.-..|.+||.+|+- .+.+||+||+.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 667889999999874 357899999875
No 96
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.67 E-value=3.2 Score=45.10 Aligned_cols=89 Identities=17% Similarity=0.197 Sum_probs=56.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHc------Ccccccc-ccccccccccccccCCCcccccccccccccccccCCCCeEE
Q 008227 469 KNWCICLCVFIGLQASILLLQHYLG------SRWFIPR-QILPEKYSYYRRFDQGTYHTTDCVICMTAIDLMQRSNDCMV 541 (573)
Q Consensus 469 ~~~~ivL~l~v~lQilIL~lQ~~~G------~Rffipk-~~~P~~y~y~~~~~~~~~~~~~CaICle~~e~~~~~~~~~v 541 (573)
+...++..+.+.++.++-+.+...- ..--+|- -.+|+.+.||+ ...|+|=.+.-.. ++..|.
T Consensus 284 PL~v~v~aG~~Alp~Llk~~~v~~~~~~~W~~~deLPveIeL~~~~~fHS--------vF~CPVlKeqtsd---eNPPm~ 352 (394)
T KOG2817|consen 284 PLSVLVNAGCIALPQLLKYKSVMELKHGEWNTKDELPVEIELGKEYHFHS--------VFICPVLKEQTSD---ENPPMM 352 (394)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHhccCccccccCccceeccccccccc--------eeecccchhhccC---CCCCee
Confidence 3456666777777777666555442 0001111 11345566665 3679998776433 246799
Q ss_pred cCCCCcccHhhHHHHHhcC---CCCCCCCC
Q 008227 542 TPCDHFFHSGCLQRWMDIK---MECPTCRR 568 (573)
Q Consensus 542 tPC~H~FH~~CL~~Wl~~k---~~CP~CR~ 568 (573)
+.|||+-..+-|.+--+.. ..||.|=.
T Consensus 353 L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 353 LICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 9999999999999977642 57999943
No 97
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=82.13 E-value=0.41 Score=58.24 Aligned_cols=45 Identities=22% Similarity=0.571 Sum_probs=38.8
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRR 568 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~ 568 (573)
....|.||.+.+.. ..++..|+|.+|..|...|+..+..||+|+.
T Consensus 1152 ~~~~c~ic~dil~~-----~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRN-----QGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHh-----cCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 45689999998752 3468889999999999999999999999974
No 98
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=81.25 E-value=1.5 Score=42.12 Aligned_cols=39 Identities=28% Similarity=0.562 Sum_probs=21.4
Q ss_pred ccccccccccccccc------CCCCeEEcCCCCc-ccHhhHHHHHh
Q 008227 520 TTDCVICMTAIDLMQ------RSNDCMVTPCDHF-FHSGCLQRWMD 558 (573)
Q Consensus 520 ~~~CaICle~~e~~~------~~~~~~vtPC~H~-FH~~CL~~Wl~ 558 (573)
+..|+||||--.... -.+.++-.-|+-. =|..||++.-+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 578999999632210 0011111224422 47999999854
No 99
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.88 E-value=0.93 Score=51.53 Aligned_cols=44 Identities=30% Similarity=0.845 Sum_probs=36.6
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
.+...+|.||.++. . ..+++|. |..|+.+|...+..||.|+..+
T Consensus 476 ~~~~~~~~~~~~~~-~------~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~ 519 (543)
T KOG0802|consen 476 REPNDVCAICYQEM-S------ARITPCS---HALCLRKWLYVQEVCPLCHTYM 519 (543)
T ss_pred hcccCcchHHHHHH-H------hcccccc---chhHHHhhhhhccccCCCchhh
Confidence 35678999999987 1 2478898 9999999999999999998653
No 100
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.19 E-value=0.99 Score=52.28 Aligned_cols=27 Identities=26% Similarity=0.770 Sum_probs=24.0
Q ss_pred eEEcCCCCcccHhhHHHHHhcCCCCCC
Q 008227 539 CMVTPCDHFFHSGCLQRWMDIKMECPT 565 (573)
Q Consensus 539 ~~vtPC~H~FH~~CL~~Wl~~k~~CP~ 565 (573)
.....|+|+-|++|..+|++...+||.
T Consensus 1043 ~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1043 NFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhhccccccccHHHHHHHHhcCCcCCC
Confidence 345679999999999999999999996
No 101
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=79.47 E-value=0.67 Score=35.77 Aligned_cols=31 Identities=32% Similarity=0.888 Sum_probs=22.9
Q ss_pred cCCC-CcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 542 TPCD-HFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 542 tPC~-H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
..|+ |..|..||..-+.....||+|..+||.
T Consensus 16 i~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred eeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 4575 999999999999999999999999984
No 102
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=75.22 E-value=0.8 Score=52.92 Aligned_cols=48 Identities=25% Similarity=0.675 Sum_probs=38.5
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC---CCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK---MECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k---~~CP~CR~~LP 571 (573)
....+|.||.+.+..+ ..+.|.|.|+..|+..-+..+ .+||+|+..++
T Consensus 19 ~k~lEc~ic~~~~~~p------~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 19 QKILECPICLEHVKEP------SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhhccCCceeEEeecc------chhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 3468999999998655 357899999999998877654 58999997653
No 103
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.00 E-value=2.2 Score=49.80 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=35.1
Q ss_pred cccccccccccccccccCCCCeEEcC---CCCcccHhhHHHHHhc------CCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTP---CDHFFHSGCLQRWMDI------KMECPTCRRPL 570 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtP---C~H~FH~~CL~~Wl~~------k~~CP~CR~~L 570 (573)
.....|.+|.-++..+.+ ..-..| |.|.||-.||..|.++ +..|+.|..-+
T Consensus 94 a~s~Ss~~C~~E~S~~~d--s~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVD--SSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccccchhheecCCccc--ccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 345667777776655432 222344 9999999999999973 45789986543
No 104
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=73.92 E-value=2.2 Score=29.35 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=21.7
Q ss_pred hHHHhHHHhhhCCccCCCccchhhhh
Q 008227 420 WIPQIITNVVRDSRKFLHPHYILGIS 445 (573)
Q Consensus 420 WvPQIirNi~rn~R~~L~~~FviG~S 445 (573)
.+|||+.|..+.+-+.++..|++-.+
T Consensus 3 ~~PQi~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 3 LLPQIIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred chhHHHHHHHcCCcCcCCHHHHHHHH
Confidence 48999999999999999888766444
No 105
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=73.59 E-value=2.1 Score=44.36 Aligned_cols=51 Identities=25% Similarity=0.550 Sum_probs=34.7
Q ss_pred ccccccccccccccccCCCC-eEEcCCCCcccHhhHHHHHh---------cCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSND-CMVTPCDHFFHSGCLQRWMD---------IKMECPTCRRP 569 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~-~~vtPC~H~FH~~CL~~Wl~---------~k~~CP~CR~~ 569 (573)
...+|-+|.++++..+.... +.-.-|+-.+|..||.+-+. ....||.|++-
T Consensus 181 ~~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 181 LNVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKF 241 (276)
T ss_pred cchhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhce
Confidence 34799999999954332111 11233999999999999432 24689999874
No 106
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.09 E-value=2.4 Score=46.24 Aligned_cols=41 Identities=22% Similarity=0.520 Sum_probs=29.3
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK 560 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k 560 (573)
....+|.||+.+....++ ...+..|+|.||.+|..+-.+.+
T Consensus 144 ~~~~~C~iC~~e~~~~~~--~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAED--MFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccccCccCccccccHhh--hHHHhcccchhhhHHhHHHhhhh
Confidence 356899999944332221 23367799999999999988754
No 107
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=67.21 E-value=2.8 Score=42.02 Aligned_cols=44 Identities=23% Similarity=0.650 Sum_probs=37.0
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTC 566 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~C 566 (573)
+.-..|.+|.+-.-.+. +.-.|+--+|..|++..++....||.|
T Consensus 179 dnlk~Cn~Ch~LvIqg~-----rCg~c~i~~h~~c~qty~q~~~~cphc 222 (235)
T KOG4718|consen 179 DNLKNCNLCHCLVIQGI-----RCGSCNIQYHRGCIQTYLQRRDICPHC 222 (235)
T ss_pred HHHHHHhHhHHHhheee-----ccCcccchhhhHHHHHHhcccCcCCch
Confidence 35679999999765443 466799999999999999999999999
No 108
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.36 E-value=3.6 Score=44.98 Aligned_cols=48 Identities=27% Similarity=0.525 Sum_probs=38.3
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTC 566 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~C 566 (573)
..-.+|+.|.-.++..++.+..... |+|-||-.|...|...+..|..|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 3467999999999877654444445 99999999999999888888655
No 109
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=62.09 E-value=2.8 Score=47.92 Aligned_cols=47 Identities=28% Similarity=0.471 Sum_probs=28.8
Q ss_pred Cccccccccccccc-cccc-CCCCeEEcCCCCcccHhhHHHHHhcCCCCCCC
Q 008227 517 TYHTTDCVICMTAI-DLMQ-RSNDCMVTPCDHFFHSGCLQRWMDIKMECPTC 566 (573)
Q Consensus 517 ~~~~~~CaICle~~-e~~~-~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~C 566 (573)
......|.+|...= .-+- ..+......|+++||.+|+.+ .+.-||.|
T Consensus 508 ~~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 508 TGKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred ccCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 34567888884320 0011 112234567999999999665 44559999
No 110
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=60.22 E-value=2.9 Score=42.63 Aligned_cols=48 Identities=23% Similarity=0.619 Sum_probs=36.5
Q ss_pred cccccccccccccccccCCCCeEEcC-CCCcccHhhHHHHHhcC-CCCC--CC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTP-CDHFFHSGCLQRWMDIK-MECP--TC 566 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtP-C~H~FH~~CL~~Wl~~k-~~CP--~C 566 (573)
..+..|++|..+.-...+ -+..+-| |-|..|.+|+++-+... .+|| -|
T Consensus 8 ~~d~~CPvCksDrYLnPd-ik~linPECyHrmCESCvdRIFs~GpAqCP~~gC 59 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPD-IKILINPECYHRMCESCVDRIFSRGPAQCPYKGC 59 (314)
T ss_pred hhcccCCccccccccCCC-eEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccH
Confidence 345689999998755432 2445567 99999999999999865 6899 56
No 111
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=57.42 E-value=8.6 Score=40.74 Aligned_cols=55 Identities=20% Similarity=0.506 Sum_probs=38.0
Q ss_pred CCccccccccccccccc-------------ccCCCCeEEcCCCCcccHhhHHHHHhc---------CCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDL-------------MQRSNDCMVTPCDHFFHSGCLQRWMDI---------KMECPTCRRPL 570 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~-------------~~~~~~~~vtPC~H~FH~~CL~~Wl~~---------k~~CP~CR~~L 570 (573)
.+....+|++|+..=.. +.......-.||||+--.+-..=|-+. +..||.|-..|
T Consensus 337 ~g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 337 TGQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred cCcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 34557899999985211 011123456899999999999999773 45799997765
No 112
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.69 E-value=4.6 Score=47.39 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=34.3
Q ss_pred cccccccccccccccc-CCCCeEEcCCCCcccHhhHHHHHhcCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQ-RSNDCMVTPCDHFFHSGCLQRWMDIKMECPTC 566 (573)
Q Consensus 519 ~~~~CaICle~~e~~~-~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~C 566 (573)
....|.-|.+...... .-....+..|+|+||..|+..-+.++. |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 4558999999875432 113567889999999999988776654 5555
No 113
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=53.09 E-value=17 Score=37.78 Aligned_cols=65 Identities=28% Similarity=0.316 Sum_probs=49.7
Q ss_pred hHHHhHHHhhhCCccCCCccchhhhhhhhhcceeeehccCCCccCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 008227 420 WIPQIITNVVRDSRKFLHPHYILGISVTRLAIPLYIFGCPHNFMRIEPDKNWCICLCVFIGLQASILLLQHYL 492 (573)
Q Consensus 420 WvPQIirNi~rn~R~~L~~~FviG~Si~RL~~plY~~~~p~N~l~~~p~~~~~ivL~l~v~lQilIL~lQ~~~ 492 (573)
.+|||+.|.++-+-..+++.|+++..+.-...-.|...-+.+ ....+...++.++-.+++.|..+
T Consensus 24 ~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~~--------~~~~~~~~yy~~~d~~l~~q~~y 88 (260)
T KOG2913|consen 24 LIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPLG--------STLKVQAVYYTLADSVLFVQCLY 88 (260)
T ss_pred hhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcccc--------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 399999999999999999999999988777655554443333 24455667778888899999755
No 114
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=52.58 E-value=4.6 Score=31.32 Aligned_cols=43 Identities=21% Similarity=0.569 Sum_probs=22.0
Q ss_pred ccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC-----CCCCCCCCC
Q 008227 521 TDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK-----MECPTCRRP 569 (573)
Q Consensus 521 ~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k-----~~CP~CR~~ 569 (573)
..|+|....++.+. +-..|.|.-+- =++.|++.. -.||+|.++
T Consensus 3 L~CPls~~~i~~P~-----Rg~~C~H~~CF-Dl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPV-----RGKNCKHLQCF-DLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEE-----EETT--SS--E-EHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCc-----cCCcCcccceE-CHHHHHHHhhccCCeECcCCcCc
Confidence 46888888887654 45679997442 366777642 369999864
No 115
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=49.23 E-value=11 Score=37.56 Aligned_cols=46 Identities=28% Similarity=0.657 Sum_probs=29.6
Q ss_pred cccccccccccc-cccccC-CCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCC
Q 008227 518 YHTTDCVICMTA-IDLMQR-SNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRR 568 (573)
Q Consensus 518 ~~~~~CaICle~-~e~~~~-~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~ 568 (573)
.....|.+|-++ +--|=+ +...+.-.|+-+||.+|.. +..||-|-+
T Consensus 150 ~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred hCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 345788999764 111111 1234556799999999966 267999943
No 116
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=42.01 E-value=63 Score=32.62 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=28.8
Q ss_pred hHHHhHHHhhhCCccCCCccchhhhhhhhhcceee
Q 008227 420 WIPQIITNVVRDSRKFLHPHYILGISVTRLAIPLY 454 (573)
Q Consensus 420 WvPQIirNi~rn~R~~L~~~FviG~Si~RL~~plY 454 (573)
.+|||+.|.++.+-+.++..|+.-..+.-...-+|
T Consensus 19 ~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 19 FYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999988766666555555
No 117
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.33 E-value=11 Score=43.48 Aligned_cols=43 Identities=23% Similarity=0.483 Sum_probs=32.2
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPT 565 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~ 565 (573)
.-..|.||+..+-... ....-+-|||.-|..|++.- ++.+||+
T Consensus 10 ~~l~c~ic~n~f~~~~--~~Pvsl~cghtic~~c~~~l--yn~scp~ 52 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQR--LEPVSLQCGHTICGHCVQLL--YNASCPT 52 (861)
T ss_pred HHhhchHHHHHHHHHh--cCcccccccchHHHHHHHhH--hhccCCC
Confidence 3467999999886543 24456789999999999985 4557883
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.06 E-value=20 Score=42.08 Aligned_cols=42 Identities=24% Similarity=0.510 Sum_probs=30.3
Q ss_pred cccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPT 565 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~ 565 (573)
...|++|--.+..- ..-.--|+|.=|.+|+.+|+.....||.
T Consensus 779 ~~~CtVC~~vi~G~----~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIRGV----DVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceeeee----EeecccccccccHHHHHHHHhcCCCCcc
Confidence 44777777765321 1122349999999999999998877776
No 119
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=40.77 E-value=9.1 Score=41.79 Aligned_cols=52 Identities=23% Similarity=0.588 Sum_probs=0.0
Q ss_pred cccccccccccccc-------------ccCCCCeEEcCCCCcccHhhHHHHHhc---------CCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDL-------------MQRSNDCMVTPCDHFFHSGCLQRWMDI---------KMECPTCRRPL 570 (573)
Q Consensus 519 ~~~~CaICle~~e~-------------~~~~~~~~vtPC~H~FH~~CL~~Wl~~---------k~~CP~CR~~L 570 (573)
...+|++|+..=.. +.......--||||+--.+...-|-+. +..||.|-.+|
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L 400 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPL 400 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcc
Confidence 47899999985211 011123456799999999999999774 35799998876
No 120
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=40.08 E-value=56 Score=34.91 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=50.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHc------Ccccccc-ccccccccccccccCCCcccccccccccccccccCCCCeEE
Q 008227 469 KNWCICLCVFIGLQASILLLQHYLG------SRWFIPR-QILPEKYSYYRRFDQGTYHTTDCVICMTAIDLMQRSNDCMV 541 (573)
Q Consensus 469 ~~~~ivL~l~v~lQilIL~lQ~~~G------~Rffipk-~~~P~~y~y~~~~~~~~~~~~~CaICle~~e~~~~~~~~~v 541 (573)
+...++..+-+.+|.++-..--.+. ..--+|- -.+|+.+.||+. ..|++--+.-.. .+..+.
T Consensus 286 pL~~~v~tG~iaf~~l~k~~si~~~kHvdWT~~~eLP~eIklp~~~hfHs~--------FiCPVlKe~~t~---ENpP~m 354 (396)
T COG5109 286 PLRELVETGTIAFLQLSKSGSILFDKHVDWTDDSELPMEIKLPKGRHFHSL--------FICPVLKELCTD---ENPPVM 354 (396)
T ss_pred hHHHHHHhhhHHHHHHHHhhhHHHhhccCccCCCCCceEEecCCcccccce--------eeccccHhhhcc---cCCCee
Confidence 3445566666665555443222111 1111222 124555666653 567775554322 235688
Q ss_pred cCCCCcccHhhHHHHHhc---CCCCCCCC
Q 008227 542 TPCDHFFHSGCLQRWMDI---KMECPTCR 567 (573)
Q Consensus 542 tPC~H~FH~~CL~~Wl~~---k~~CP~CR 567 (573)
+.|||+--.+-+++--+. .-.||.|-
T Consensus 355 l~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 355 LECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 899999999999886553 34699994
No 121
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=38.45 E-value=24 Score=33.13 Aligned_cols=50 Identities=16% Similarity=0.357 Sum_probs=33.1
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc---CCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI---KMECPTCRRPL 570 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~---k~~CP~CR~~L 570 (573)
.--+|.||.|.-.++.= -+ -..=||-.-|..|-..-++. ...||.|+.++
T Consensus 79 ~lYeCnIC~etS~ee~F-LK-PneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSF 131 (140)
T PF05290_consen 79 KLYECNICKETSAEERF-LK-PNECCGYSICNACYANLWKFCNLYPVCPVCKTSF 131 (140)
T ss_pred CceeccCcccccchhhc-CC-cccccchHHHHHHHHHHHHHcccCCCCCcccccc
Confidence 66899999997433210 00 01228988888886665553 46899999875
No 122
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=37.88 E-value=18 Score=26.11 Aligned_cols=29 Identities=17% Similarity=0.519 Sum_probs=20.2
Q ss_pred ccccccccccccccC-----CCCeEEcCCCCccc
Q 008227 521 TDCVICMTAIDLMQR-----SNDCMVTPCDHFFH 549 (573)
Q Consensus 521 ~~CaICle~~e~~~~-----~~~~~vtPC~H~FH 549 (573)
.+|+=|...++.+++ ..++....|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 578889998876542 23455667888875
No 123
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=34.16 E-value=42 Score=26.77 Aligned_cols=34 Identities=15% Similarity=0.440 Sum_probs=24.8
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHH
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQ 554 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~ 554 (573)
....|.+|-+.+..++ +.+...-|+-.+|++|-+
T Consensus 4 ~~~~C~~Cg~~~~~~d--DiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGD--DIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCcccCCC--CEEECCCCCCcccHHHHh
Confidence 3568999999997554 133444599999999943
No 124
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=33.96 E-value=22 Score=29.44 Aligned_cols=11 Identities=36% Similarity=1.150 Sum_probs=8.4
Q ss_pred ccHhhHHHHHh
Q 008227 548 FHSGCLQRWMD 558 (573)
Q Consensus 548 FH~~CL~~Wl~ 558 (573)
||+.||.+|..
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 125
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=33.17 E-value=38 Score=29.61 Aligned_cols=38 Identities=21% Similarity=0.693 Sum_probs=31.2
Q ss_pred cccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
...|.-|...+.--+ ..| +-+|+-.|..|..|++++|+
T Consensus 33 rS~C~~C~~~L~~~~------lIP---------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWD------LIP---------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCcCcCCCCcCcccc------cch---------HHHHHHhCCCCcccCCCCCh
Confidence 478999998876443 455 78899999999999999986
No 126
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.53 E-value=8.9 Score=39.84 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=39.4
Q ss_pred ccccccccccccccccCCCCeEEcC--------CCCcccHhhHHHHHhcC-CCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTP--------CDHFFHSGCLQRWMDIK-MECPTCRR 568 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtP--------C~H~FH~~CL~~Wl~~k-~~CP~CR~ 568 (573)
....|.||...++..+......+.. |+|.-+.+|++.=+... -.||.||.
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~ 264 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTW 264 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccc
Confidence 4578999999998544334556666 99999999999987654 58999986
No 127
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=31.16 E-value=64 Score=25.96 Aligned_cols=46 Identities=17% Similarity=0.494 Sum_probs=31.7
Q ss_pred ccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 521 TDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 521 ~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
..|--|-.++..+. .+.++-.=...||.+|.+.-+ +..||.|-..|
T Consensus 6 pnCE~C~~dLp~~s--~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGel 51 (57)
T PF06906_consen 6 PNCECCDKDLPPDS--PEAYICSFECTFCADCAETML--NGVCPNCGGEL 51 (57)
T ss_pred CCccccCCCCCCCC--CcceEEeEeCcccHHHHHHHh--cCcCcCCCCcc
Confidence 56777888775433 233342233679999999966 56899998776
No 128
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=30.94 E-value=44 Score=22.94 Aligned_cols=38 Identities=24% Similarity=0.648 Sum_probs=25.4
Q ss_pred cccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 522 ~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
.|..|-+.+...+ ..+..=+..||.+|. .|..|+.+|.
T Consensus 1 ~C~~C~~~i~~~~----~~~~~~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGE----LVLRALGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCc----EEEEeCCccccccCC--------CCcccCCcCc
Confidence 3788888876431 223334788998884 5888888764
No 129
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=30.79 E-value=24 Score=28.47 Aligned_cols=39 Identities=18% Similarity=0.498 Sum_probs=21.6
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHH
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWM 557 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl 557 (573)
+.+...|.+|...|..-. ++..--.||++|+.+|.....
T Consensus 6 d~~~~~C~~C~~~F~~~~--rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 6 DSEASNCMICGKKFSLFR--RRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GGG-SB-TTT--B-BSSS---EEE-TTT--EEECCCS-EEE
T ss_pred CCCCCcCcCcCCcCCCce--eeEccCCCCCEECCchhCCEE
Confidence 345689999999996643 345566799999999987654
No 130
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=29.74 E-value=18 Score=26.86 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=17.9
Q ss_pred eEEcCCCCcccHhhHHHHHhcCCCCCCCCC
Q 008227 539 CMVTPCDHFFHSGCLQRWMDIKMECPTCRR 568 (573)
Q Consensus 539 ~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~ 568 (573)
+....|||.|....--.= .....||.|..
T Consensus 6 y~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 6 YRCEECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred EEeCCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 455678888875321111 23467999987
No 131
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=29.61 E-value=29 Score=39.83 Aligned_cols=40 Identities=23% Similarity=0.548 Sum_probs=27.4
Q ss_pred CCcccccccccccccccc--cCC------CCeEEcCCCCcccHhhHHHH
Q 008227 516 GTYHTTDCVICMTAIDLM--QRS------NDCMVTPCDHFFHSGCLQRW 556 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~--~~~------~~~~vtPC~H~FH~~CL~~W 556 (573)
+.+....|+||.|.|++- ++. +.+.++ -|-+||..|+..=
T Consensus 509 d~e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le-~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 509 DSERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE-FGRIFHSKCLSEK 556 (579)
T ss_pred CcccccCCcccccccceeecchhhheeecceeeec-cCceeeccccchH
Confidence 347788999999999652 111 122333 6889999998764
No 132
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.12 E-value=23 Score=37.52 Aligned_cols=50 Identities=26% Similarity=0.586 Sum_probs=41.1
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
.....|-||...+.++...+ -|.|-|+..|...|.+....||.||...-|
T Consensus 103 ~~~~~~~~~~g~l~vpt~~q-----g~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQ-----GCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CCccceeeeeeeEEeccccc-----CceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 45678999999988776322 399999999999999999999999987654
No 133
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=28.97 E-value=35 Score=26.12 Aligned_cols=37 Identities=27% Similarity=0.784 Sum_probs=20.1
Q ss_pred ccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 523 CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
|+-|-+.+... ...+..-+..||.+|+ .|-.|+++|.
T Consensus 1 C~~C~~~I~~~----~~~~~~~~~~~H~~Cf--------~C~~C~~~l~ 37 (58)
T PF00412_consen 1 CARCGKPIYGT----EIVIKAMGKFWHPECF--------KCSKCGKPLN 37 (58)
T ss_dssp BTTTSSBESSS----SEEEEETTEEEETTTS--------BETTTTCBTT
T ss_pred CCCCCCCccCc----EEEEEeCCcEEEcccc--------ccCCCCCccC
Confidence 55666666532 2222345666776663 4666666554
No 134
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=28.89 E-value=30 Score=23.42 Aligned_cols=11 Identities=36% Similarity=1.099 Sum_probs=8.3
Q ss_pred CCCCCCCCCCC
Q 008227 561 MECPTCRRPLP 571 (573)
Q Consensus 561 ~~CP~CR~~LP 571 (573)
++||.|++.+|
T Consensus 1 K~CP~C~~~V~ 11 (26)
T PF10571_consen 1 KTCPECGAEVP 11 (26)
T ss_pred CcCCCCcCCch
Confidence 36888888775
No 135
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=28.88 E-value=27 Score=25.27 Aligned_cols=29 Identities=21% Similarity=0.503 Sum_probs=20.3
Q ss_pred ccccccccccccccC-----CCCeEEcCCCCccc
Q 008227 521 TDCVICMTAIDLMQR-----SNDCMVTPCDHFFH 549 (573)
Q Consensus 521 ~~CaICle~~e~~~~-----~~~~~vtPC~H~FH 549 (573)
..|+=|...++.+++ ...+....|+|.|+
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 578999998877542 23455667888875
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=28.66 E-value=41 Score=36.03 Aligned_cols=51 Identities=27% Similarity=0.615 Sum_probs=34.9
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
.....|+||-++.+..+. ...-.||+|.-|..|+..=.....+||.||.+-
T Consensus 247 ~v~~s~p~~~~~~~~~d~--~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 247 SVPPSCPICYEDLDLTDS--NFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPY 297 (327)
T ss_pred ccCCCCCCCCCccccccc--ccccccccccchhhhhhcccccCCCCCccCCcc
Confidence 345789999998754431 222234667667777777667788999999764
No 137
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.47 E-value=43 Score=34.63 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=28.6
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD 558 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~ 558 (573)
..-+.|+.|+++.. +.+++|=||+|+++||-+.+-
T Consensus 41 K~FdcCsLtLqPc~------dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCR------DPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred CCcceeeeeccccc------CCccCCCCeeeeHHHHHHHHH
Confidence 45567889999875 457899999999999988764
No 138
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=28.42 E-value=13 Score=28.99 Aligned_cols=10 Identities=60% Similarity=1.361 Sum_probs=4.8
Q ss_pred CCCCCCCCCC
Q 008227 562 ECPTCRRPLP 571 (573)
Q Consensus 562 ~CP~CR~~LP 571 (573)
.||+|.+++.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 7888888764
No 139
>PLN02189 cellulose synthase
Probab=27.72 E-value=51 Score=40.44 Aligned_cols=52 Identities=19% Similarity=0.390 Sum_probs=35.9
Q ss_pred ccccccccccccccccCCCCeE-EcCCCCcccHhhHHHHHh-cCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCM-VTPCDHFFHSGCLQRWMD-IKMECPTCRRPL 570 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~-vtPC~H~FH~~CL~~Wl~-~k~~CP~CR~~L 570 (573)
....|.||-+++....+++... +--|+---|+.|.+-=-+ .++.||.|+...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y 86 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRY 86 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCch
Confidence 4569999999987665444332 234777789999854222 357899998753
No 140
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.04 E-value=35 Score=37.95 Aligned_cols=38 Identities=21% Similarity=0.490 Sum_probs=30.4
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI 559 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~ 559 (573)
.....+|-||.+.+.. ......|+|.|+..|....+..
T Consensus 67 ~~~~~~c~ic~~~~~~-----~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG-----EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCccccCCcccCCCcc-----hhhhcCCCcHHHHHHHHHHhhh
Confidence 3556899999998753 2346789999999999998874
No 141
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=26.84 E-value=24 Score=29.61 Aligned_cols=39 Identities=23% Similarity=0.688 Sum_probs=19.6
Q ss_pred ccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 521 TDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 521 ~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
..|+.|.++++... +|..|..|-.. +.....||.|.++|
T Consensus 2 ~~CP~C~~~L~~~~----------~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----------GHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET----------TEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC----------CEEECcccccc-ceecccCCCcccHH
Confidence 57999999876432 44455555443 23456799998876
No 142
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=25.93 E-value=72 Score=28.59 Aligned_cols=24 Identities=33% Similarity=0.778 Sum_probs=19.4
Q ss_pred CCcccHhhHHHHHhc---------CCCCCCCCC
Q 008227 545 DHFFHSGCLQRWMDI---------KMECPTCRR 568 (573)
Q Consensus 545 ~H~FH~~CL~~Wl~~---------k~~CP~CR~ 568 (573)
+=.||..||..+... +-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 677999999999863 246999986
No 143
>PF11145 DUF2921: Protein of unknown function (DUF2921); InterPro: IPR021319 This eukaryotic family of proteins has no known function.
Probab=25.21 E-value=7.9e+02 Score=30.33 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.3
Q ss_pred cceeeEeecCCcCCCCCcCcceee
Q 008227 238 YHIEGLMESPAVDDDGDCFSPLLL 261 (573)
Q Consensus 238 ~~i~G~i~SP~~~~spdC~~~l~~ 261 (573)
-.+.|+|+|.+-+.|+.+|.++.+
T Consensus 169 r~V~G~LeS~n~~~d~~YFd~VsL 192 (909)
T PF11145_consen 169 RFVTGELESLNSKSDSAYFDPVSL 192 (909)
T ss_pred cceeEEEEecCCCCCccccceeEE
Confidence 378999999998899999998887
No 144
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=25.08 E-value=43 Score=22.88 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=12.5
Q ss_pred cccccccccccccCCCCeEEcCCCCcccHhhH
Q 008227 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCL 553 (573)
Q Consensus 522 ~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL 553 (573)
.|.+|.++.... ..|.-..|+-.+|.+|+
T Consensus 2 ~C~~C~~~~~~~---~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGG---WFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S-----EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCC---ceEECccCCCccChhcC
Confidence 588999987641 36788899999999995
No 145
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.15 E-value=99 Score=28.28 Aligned_cols=49 Identities=18% Similarity=0.349 Sum_probs=35.2
Q ss_pred ccccccccccccccc--------CCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQ--------RSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRR 568 (573)
Q Consensus 520 ~~~CaICle~~e~~~--------~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~ 568 (573)
...|--|...+.... ....+....|++.|+.+|=.=+-+.=..||-|-.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 457999999886431 1234667889999999995555555567999953
No 148
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.86 E-value=32 Score=38.25 Aligned_cols=42 Identities=29% Similarity=0.525 Sum_probs=30.6
Q ss_pred ccccccccccccccccCCCC--eEEcCCCCcccHhhHHHHHhcC
Q 008227 519 HTTDCVICMTAIDLMQRSND--CMVTPCDHFFHSGCLQRWMDIK 560 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~--~~vtPC~H~FH~~CL~~Wl~~k 560 (573)
....|+.|..+++....... ....+|+|.||..|+..|-...
T Consensus 225 ntk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 225 NTKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred cCccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 44569999999987653322 1223599999999999998763
No 149
>CHL00204 ycf1 Ycf1; Provisional
Probab=21.64 E-value=2.8e+02 Score=36.21 Aligned_cols=28 Identities=32% Similarity=0.801 Sum_probs=19.0
Q ss_pred cchhhhhh-hhhcceeeehccCCCccCCCC
Q 008227 439 HYILGISV-TRLAIPLYIFGCPHNFMRIEP 467 (573)
Q Consensus 439 ~FviG~Si-~RL~~plY~~~~p~N~l~~~p 467 (573)
.|+++.|+ .|| +.+|.|-|.++++++.-
T Consensus 137 ~~iLpss~LaRL-vniymFRcnnk~lFvtS 165 (1832)
T CHL00204 137 HFILPSSMLARL-VNIYMFRCNNKMLFVTS 165 (1832)
T ss_pred HhhcccHHHHHH-HHHhheeccCcchhhHH
Confidence 34455554 455 78999999888877544
No 150
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=20.80 E-value=92 Score=38.50 Aligned_cols=51 Identities=18% Similarity=0.359 Sum_probs=35.2
Q ss_pred ccccccccccccccccCCCCe-EEcCCCCcccHhhHHHHH-hcCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDC-MVTPCDHFFHSGCLQRWM-DIKMECPTCRRP 569 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~-~vtPC~H~FH~~CL~~Wl-~~k~~CP~CR~~ 569 (573)
....|.||-+++....+++-. .+--|+---|+.|-+==- +.++.||.|+..
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktr 68 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTK 68 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCc
Confidence 456999999999776543322 334577779999985322 235789999875
No 151
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.52 E-value=70 Score=22.49 Aligned_cols=22 Identities=23% Similarity=0.653 Sum_probs=13.5
Q ss_pred cCCCCcccHhhHHHHHhcCCCCCCCCCC
Q 008227 542 TPCDHFFHSGCLQRWMDIKMECPTCRRP 569 (573)
Q Consensus 542 tPC~H~FH~~CL~~Wl~~k~~CP~CR~~ 569 (573)
.-|||++-.+- ..-.||+|..+
T Consensus 5 ~~CGy~y~~~~------~~~~CP~Cg~~ 26 (33)
T cd00350 5 PVCGYIYDGEE------APWVCPVCGAP 26 (33)
T ss_pred CCCCCEECCCc------CCCcCcCCCCc
Confidence 44777665533 23479999763
No 152
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=20.29 E-value=50 Score=24.79 Aligned_cols=43 Identities=23% Similarity=0.569 Sum_probs=27.0
Q ss_pred ccccccccccccCCCCeEEcCCCCcccHhhHHHHHh------cCCCCCCCCC
Q 008227 523 CVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD------IKMECPTCRR 568 (573)
Q Consensus 523 CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~------~k~~CP~CR~ 568 (573)
|.||.+.-+.+ +-+.--.|+..||..|+..=.. ..-.||.|+.
T Consensus 2 C~vC~~~~~~~---~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDG---DMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTS---SEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCC---CeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 88998832211 2233346899999999876543 1346888753
Done!