Query 008227
Match_columns 573
No_of_seqs 339 out of 1917
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 21:11:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4j_A Ring finger protein 38; 99.4 2E-13 6.8E-18 111.7 4.0 54 516-572 19-72 (75)
2 1iym_A EL5; ring-H2 finger, ub 99.4 3.6E-13 1.2E-17 103.3 4.2 51 518-571 3-54 (55)
3 2ep4_A Ring finger protein 24; 99.3 4.6E-13 1.6E-17 109.0 4.5 54 516-572 11-64 (74)
4 2l0b_A E3 ubiquitin-protein li 99.3 4.3E-13 1.5E-17 114.3 4.1 53 517-572 37-89 (91)
5 2kiz_A E3 ubiquitin-protein li 99.3 8E-13 2.7E-17 106.2 4.8 54 516-572 10-63 (69)
6 2ecm_A Ring finger and CHY zin 99.3 8.7E-13 3E-17 101.0 4.7 52 518-571 3-54 (55)
7 2ecl_A Ring-box protein 2; RNF 99.3 1.4E-12 4.8E-17 108.9 4.9 53 519-571 14-75 (81)
8 2ect_A Ring finger protein 126 99.3 1.4E-12 4.8E-17 107.2 4.6 53 516-571 11-63 (78)
9 2ea6_A Ring finger protein 4; 99.2 4.2E-12 1.4E-16 101.3 4.8 57 516-572 11-68 (69)
10 3ng2_A RNF4, snurf, ring finge 99.2 4.3E-12 1.5E-16 102.0 4.3 56 517-572 7-63 (71)
11 2xeu_A Ring finger protein 4; 99.2 5.3E-12 1.8E-16 99.2 3.7 54 519-572 2-56 (64)
12 1v87_A Deltex protein 2; ring- 99.2 1.3E-11 4.4E-16 108.6 4.9 53 519-571 24-93 (114)
13 3dpl_R Ring-box protein 1; ubi 99.2 1.5E-11 5.1E-16 108.3 4.7 52 519-570 36-99 (106)
14 1chc_A Equine herpes virus-1 r 99.1 1.6E-11 5.5E-16 98.1 3.5 50 518-572 3-52 (68)
15 2d8t_A Dactylidin, ring finger 99.1 3.3E-11 1.1E-15 97.5 3.8 49 517-571 12-60 (71)
16 2djb_A Polycomb group ring fin 99.1 4.5E-11 1.5E-15 97.0 4.5 51 516-571 11-61 (72)
17 4a0k_B E3 ubiquitin-protein li 99.1 1.5E-11 5E-16 110.3 0.4 52 519-570 47-110 (117)
18 2ct2_A Tripartite motif protei 99.1 9.9E-11 3.4E-15 97.7 5.1 54 516-571 11-67 (88)
19 2ecn_A Ring finger protein 141 99.1 2.5E-11 8.5E-16 97.7 1.3 50 516-572 11-60 (70)
20 2csy_A Zinc finger protein 183 99.1 8E-11 2.7E-15 97.5 4.1 50 516-571 11-60 (81)
21 2d8s_A Cellular modulator of i 99.0 9.2E-11 3.2E-15 98.2 4.0 52 516-571 11-69 (80)
22 2ecy_A TNF receptor-associated 99.0 1.4E-10 4.7E-15 92.4 4.7 51 516-572 11-62 (66)
23 2ysl_A Tripartite motif-contai 99.0 1.6E-10 5.4E-15 93.4 4.7 50 516-571 16-68 (73)
24 4ayc_A E3 ubiquitin-protein li 99.0 7.3E-11 2.5E-15 107.8 2.9 47 519-571 52-98 (138)
25 2yur_A Retinoblastoma-binding 99.0 2.1E-10 7.1E-15 93.7 4.3 50 516-571 11-63 (74)
26 2ecw_A Tripartite motif-contai 99.0 3E-10 1E-14 93.8 4.6 50 516-571 15-70 (85)
27 2egp_A Tripartite motif-contai 99.0 1.5E-10 5.1E-15 94.9 2.3 50 516-571 8-64 (79)
28 1t1h_A Gspef-atpub14, armadill 99.0 3.2E-10 1.1E-14 93.0 3.9 49 517-571 5-54 (78)
29 2ecv_A Tripartite motif-contai 98.9 3.8E-10 1.3E-14 93.2 4.2 50 516-571 15-70 (85)
30 3lrq_A E3 ubiquitin-protein li 98.9 1.9E-10 6.5E-15 99.5 2.5 49 517-571 19-69 (100)
31 4ap4_A E3 ubiquitin ligase RNF 98.9 3.3E-10 1.1E-14 101.0 4.1 55 518-572 5-60 (133)
32 1g25_A CDK-activating kinase a 98.9 6E-10 2.1E-14 88.4 4.5 51 519-571 2-54 (65)
33 2y43_A E3 ubiquitin-protein li 98.9 3.7E-10 1.3E-14 97.0 2.9 50 517-571 19-68 (99)
34 3fl2_A E3 ubiquitin-protein li 98.9 5.3E-10 1.8E-14 100.0 3.1 49 518-572 50-99 (124)
35 4ap4_A E3 ubiquitin ligase RNF 98.9 5.1E-10 1.7E-14 99.7 2.8 56 517-572 69-125 (133)
36 2ckl_A Polycomb group ring fin 98.9 8.1E-10 2.8E-14 96.5 3.9 50 517-571 12-61 (108)
37 2ysj_A Tripartite motif-contai 98.9 1.2E-09 4.1E-14 86.0 4.3 45 516-566 16-63 (63)
38 2ecj_A Tripartite motif-contai 98.8 1.4E-09 4.8E-14 83.8 3.9 45 516-566 11-58 (58)
39 2ct0_A Non-SMC element 1 homol 98.8 1.4E-09 4.7E-14 89.8 3.8 50 517-571 12-63 (74)
40 1jm7_A BRCA1, breast cancer ty 98.8 1.1E-09 3.8E-14 95.5 3.3 48 518-571 19-69 (112)
41 3ztg_A E3 ubiquitin-protein li 98.8 1.7E-09 6E-14 91.3 4.0 49 516-570 9-60 (92)
42 2ckl_B Ubiquitin ligase protei 98.8 1.6E-09 5.4E-14 101.6 3.1 49 518-571 52-101 (165)
43 3hct_A TNF receptor-associated 98.8 2.3E-09 7.9E-14 95.2 3.7 52 514-571 12-64 (118)
44 1z6u_A NP95-like ring finger p 98.8 1.9E-09 6.4E-14 100.3 3.1 49 518-572 76-125 (150)
45 3l11_A E3 ubiquitin-protein li 98.7 1.7E-09 5.8E-14 95.3 0.5 49 517-571 12-61 (115)
46 1rmd_A RAG1; V(D)J recombinati 98.7 3.8E-09 1.3E-13 93.2 2.5 48 518-571 21-69 (116)
47 1e4u_A Transcriptional repress 98.7 8E-09 2.8E-13 85.9 4.0 52 516-571 7-61 (78)
48 2y1n_A E3 ubiquitin-protein li 98.7 7.9E-09 2.7E-13 109.6 4.4 46 520-571 332-378 (389)
49 1bor_A Transcription factor PM 98.7 4.4E-09 1.5E-13 81.5 1.7 47 516-571 2-48 (56)
50 2vje_A E3 ubiquitin-protein li 98.6 1.3E-08 4.4E-13 81.2 3.6 48 518-571 6-56 (64)
51 2kr4_A Ubiquitin conjugation f 98.6 1.3E-08 4.3E-13 85.7 3.7 49 517-571 11-59 (85)
52 2kre_A Ubiquitin conjugation f 98.6 1.5E-08 5E-13 88.1 3.9 50 517-572 26-75 (100)
53 1wgm_A Ubiquitin conjugation f 98.6 2.6E-08 8.7E-13 86.3 4.2 49 517-571 19-68 (98)
54 3knv_A TNF receptor-associated 98.6 1.1E-08 3.8E-13 94.1 1.4 49 516-570 27-76 (141)
55 2vje_B MDM4 protein; proto-onc 98.6 3E-08 1E-12 78.8 3.3 49 517-571 4-55 (63)
56 1jm7_B BARD1, BRCA1-associated 98.5 1.5E-08 5E-13 89.9 1.2 47 517-571 19-66 (117)
57 4ic3_A E3 ubiquitin-protein li 98.5 2.4E-08 8.3E-13 81.7 1.8 44 518-571 22-66 (74)
58 2c2l_A CHIP, carboxy terminus 98.5 4.2E-08 1.4E-12 97.9 3.9 49 517-571 205-254 (281)
59 3hcs_A TNF receptor-associated 98.5 6.7E-08 2.3E-12 90.7 3.5 53 514-572 12-65 (170)
60 3k1l_B Fancl; UBC, ring, RWD, 98.4 3.4E-08 1.2E-12 102.6 1.2 55 517-571 305-372 (381)
61 1vyx_A ORF K3, K3RING; zinc-bi 98.4 1.6E-07 5.6E-12 74.2 3.6 49 517-571 3-58 (60)
62 2yu4_A E3 SUMO-protein ligase 98.3 2E-07 6.7E-12 79.8 2.9 47 517-569 4-59 (94)
63 2ecg_A Baculoviral IAP repeat- 98.3 1.8E-07 6.1E-12 76.5 2.3 45 518-572 23-68 (75)
64 1wim_A KIAA0161 protein; ring 98.3 1.5E-07 5.2E-12 80.1 1.8 52 518-572 3-66 (94)
65 2f42_A STIP1 homology and U-bo 98.3 3.8E-07 1.3E-11 87.3 4.0 49 517-571 103-152 (179)
66 2ea5_A Cell growth regulator w 98.3 6.5E-07 2.2E-11 72.2 4.3 46 516-571 11-57 (68)
67 2yho_A E3 ubiquitin-protein li 98.2 4.1E-07 1.4E-11 75.5 1.3 44 518-571 16-60 (79)
68 3t6p_A Baculoviral IAP repeat- 98.0 1.4E-06 4.6E-11 91.5 1.5 44 518-571 293-337 (345)
69 2bay_A PRE-mRNA splicing facto 98.0 2.1E-06 7.3E-11 67.9 1.9 46 520-571 3-49 (61)
70 3htk_C E3 SUMO-protein ligase 97.9 3.3E-06 1.1E-10 85.0 2.5 51 516-571 177-231 (267)
71 3vk6_A E3 ubiquitin-protein li 97.5 6.1E-05 2.1E-09 65.1 3.7 45 522-571 3-48 (101)
72 3nw0_A Non-structural maintena 97.4 6.4E-05 2.2E-09 74.9 3.8 48 519-571 179-228 (238)
73 2ko5_A Ring finger protein Z; 86.3 0.37 1.3E-05 41.1 2.7 48 517-571 25-72 (99)
74 2lri_C Autoimmune regulator; Z 85.8 0.61 2.1E-05 37.1 3.6 47 518-570 10-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 85.6 0.4 1.4E-05 40.4 2.6 35 520-557 3-38 (101)
76 3m62_A Ubiquitin conjugation f 79.5 1.8 6.1E-05 50.7 5.6 47 519-571 890-937 (968)
77 1we9_A PHD finger family prote 68.2 0.91 3.1E-05 35.4 -0.4 51 517-569 3-58 (64)
78 2ysm_A Myeloid/lymphoid or mix 63.9 2.4 8.3E-05 36.5 1.5 48 517-567 4-55 (111)
79 2l5u_A Chromodomain-helicase-D 61.1 3.8 0.00013 31.8 2.0 47 516-568 7-57 (61)
80 1f62_A Transcription factor WS 60.7 4.3 0.00015 30.0 2.1 45 522-569 2-50 (51)
81 1mm2_A MI2-beta; PHD, zinc fin 58.9 2.9 9.8E-05 32.5 0.9 49 516-570 5-57 (61)
82 2k16_A Transcription initiatio 58.4 3.4 0.00012 33.0 1.3 52 516-570 14-69 (75)
83 1wep_A PHF8; structural genomi 55.1 7.1 0.00024 31.6 2.8 50 518-570 10-64 (79)
84 2lbm_A Transcriptional regulat 50.1 15 0.00053 33.4 4.4 47 516-568 59-116 (142)
85 2yql_A PHD finger protein 21A; 49.5 2.2 7.6E-05 32.4 -1.1 47 516-568 5-55 (56)
86 3asl_A E3 ubiquitin-protein li 47.8 5.1 0.00017 32.0 0.7 45 522-569 20-69 (70)
87 1fp0_A KAP-1 corepressor; PHD 47.2 9.8 0.00033 32.0 2.4 48 516-569 21-72 (88)
88 1wd2_A Ariadne-1 protein homol 46.2 4.2 0.00014 31.6 -0.0 43 519-561 5-49 (60)
89 3v43_A Histone acetyltransfera 45.4 24 0.00083 30.3 4.8 36 519-554 4-42 (112)
90 2e6s_A E3 ubiquitin-protein li 45.1 4.6 0.00016 32.9 0.1 44 522-568 28-76 (77)
91 2kwj_A Zinc finger protein DPF 44.9 12 0.0004 32.5 2.6 36 521-556 2-41 (114)
92 3ask_A E3 ubiquitin-protein li 44.8 5.2 0.00018 39.3 0.4 45 522-569 176-225 (226)
93 1wil_A KIAA1045 protein; ring 44.2 23 0.0008 29.6 4.1 36 517-556 12-47 (89)
94 2ri7_A Nucleosome-remodeling f 43.3 4.1 0.00014 37.7 -0.6 49 517-568 5-58 (174)
95 2lv9_A Histone-lysine N-methyl 42.7 9.7 0.00033 32.2 1.7 47 519-569 27-76 (98)
96 2e6r_A Jumonji/ARID domain-con 40.0 3.7 0.00013 34.5 -1.3 48 518-568 14-65 (92)
97 1wem_A Death associated transc 38.8 6.1 0.00021 31.7 -0.2 48 519-570 15-71 (76)
98 1xwh_A Autoimmune regulator; P 37.9 4.1 0.00014 32.0 -1.3 46 517-568 5-54 (66)
99 3ql9_A Transcriptional regulat 37.6 24 0.00082 31.6 3.5 47 516-568 53-110 (129)
100 2vpb_A Hpygo1, pygopus homolog 37.5 17 0.00058 28.5 2.3 36 517-554 5-41 (65)
101 1z2q_A LM5-1; membrane protein 37.4 29 0.00099 28.3 3.8 38 517-556 18-55 (84)
102 3t7l_A Zinc finger FYVE domain 36.9 19 0.00064 30.0 2.6 38 518-557 18-55 (90)
103 3v43_A Histone acetyltransfera 36.3 11 0.00039 32.5 1.2 45 522-568 63-111 (112)
104 2jvx_A NF-kappa-B essential mo 35.6 6.2 0.00021 26.3 -0.5 13 560-572 3-15 (28)
105 2co8_A NEDD9 interacting prote 35.6 25 0.00087 28.1 3.1 42 517-571 12-53 (82)
106 1joc_A EEA1, early endosomal a 34.9 20 0.00069 31.7 2.6 36 519-556 68-103 (125)
107 1wen_A Inhibitor of growth fam 34.1 21 0.00071 28.5 2.3 45 517-570 13-66 (71)
108 2kgg_A Histone demethylase jar 33.9 12 0.00041 27.8 0.8 42 522-567 4-52 (52)
109 3i2d_A E3 SUMO-protein ligase 33.3 27 0.00092 36.6 3.6 49 518-572 247-300 (371)
110 2cu8_A Cysteine-rich protein 2 33.2 20 0.0007 27.9 2.1 39 520-571 9-47 (76)
111 1weu_A Inhibitor of growth fam 33.1 20 0.0007 30.1 2.2 47 518-571 34-87 (91)
112 1y02_A CARP2, FYVE-ring finger 33.1 5.2 0.00018 35.5 -1.6 47 518-566 17-63 (120)
113 2yw8_A RUN and FYVE domain-con 32.5 24 0.00083 28.7 2.5 37 518-556 17-53 (82)
114 4fo9_A E3 SUMO-protein ligase 32.3 29 0.00098 36.3 3.6 48 519-572 214-266 (360)
115 1wee_A PHD finger family prote 32.2 4.3 0.00015 32.4 -2.1 53 517-572 13-69 (72)
116 2cs3_A Protein C14ORF4, MY039 31.7 38 0.0013 28.1 3.5 39 517-559 12-52 (93)
117 2puy_A PHD finger protein 21A; 31.4 7.1 0.00024 29.9 -0.9 45 518-568 3-51 (60)
118 3mpx_A FYVE, rhogef and PH dom 31.0 10 0.00035 39.6 0.0 51 518-570 373-430 (434)
119 1weo_A Cellulose synthase, cat 30.5 68 0.0023 27.0 4.9 52 519-570 15-68 (93)
120 2yt5_A Metal-response element- 30.5 21 0.00072 27.5 1.8 52 517-569 3-61 (66)
121 1wew_A DNA-binding family prot 30.3 11 0.00039 30.4 0.1 46 518-569 14-72 (78)
122 1x4u_A Zinc finger, FYVE domai 29.9 26 0.0009 28.5 2.3 37 518-556 12-48 (84)
123 1wyh_A SLIM 2, skeletal muscle 29.9 41 0.0014 25.6 3.4 40 520-571 5-44 (72)
124 3o70_A PHD finger protein 13; 29.5 8.9 0.0003 30.4 -0.6 46 517-568 16-66 (68)
125 3zyq_A Hepatocyte growth facto 29.3 22 0.00077 34.4 2.1 36 520-557 164-199 (226)
126 2ku3_A Bromodomain-containing 29.2 38 0.0013 27.0 3.1 52 516-568 12-65 (71)
127 3shb_A E3 ubiquitin-protein li 29.0 12 0.00042 30.4 0.1 45 522-569 28-77 (77)
128 2o35_A Hypothetical protein DU 28.4 20 0.00068 30.8 1.3 11 548-558 43-53 (105)
129 3fyb_A Protein of unknown func 28.2 20 0.00069 30.7 1.3 11 548-558 42-52 (104)
130 1wfk_A Zinc finger, FYVE domai 26.1 32 0.0011 28.5 2.2 38 517-556 6-43 (88)
131 1vfy_A Phosphatidylinositol-3- 26.0 37 0.0013 26.9 2.5 34 521-556 12-45 (73)
132 2gmg_A Hypothetical protein PF 25.8 16 0.00054 31.7 0.3 26 539-569 68-93 (105)
133 1dvp_A HRS, hepatocyte growth 25.7 27 0.00091 33.5 1.9 35 520-556 161-195 (220)
134 2rsd_A E3 SUMO-protein ligase 25.7 7.1 0.00024 30.8 -1.9 45 518-568 8-64 (68)
135 1iml_A CRIP, cysteine rich int 25.5 32 0.0011 26.7 2.0 44 519-569 26-70 (76)
136 1r79_A Diacylglycerol kinase, 24.2 1.2E+02 0.0041 25.0 5.3 47 516-565 34-80 (84)
137 1nyp_A Pinch protein; LIM doma 24.1 49 0.0017 24.8 2.8 38 520-571 5-42 (66)
138 1x4k_A Skeletal muscle LIM-pro 23.9 46 0.0016 25.3 2.7 39 521-571 6-44 (72)
139 1x64_A Alpha-actinin-2 associa 23.4 66 0.0023 25.8 3.6 41 517-571 22-62 (89)
140 2d8z_A Four and A half LIM dom 23.4 48 0.0016 25.2 2.6 26 521-552 6-31 (70)
141 3f6q_B LIM and senescent cell 23.3 29 0.001 26.3 1.4 41 519-571 10-50 (72)
142 2lcq_A Putative toxin VAPC6; P 23.0 22 0.00076 32.4 0.7 28 537-570 131-158 (165)
143 1x62_A C-terminal LIM domain p 22.4 55 0.0019 25.7 2.9 39 518-570 13-51 (79)
144 2jmo_A Parkin; IBR, E3 ligase, 22.2 31 0.0011 27.9 1.3 43 520-564 25-74 (80)
145 1g47_A Pinch protein; LIM doma 22.0 41 0.0014 26.0 2.0 42 518-571 9-50 (77)
146 2d8y_A Eplin protein; LIM doma 22.0 56 0.0019 26.4 2.9 28 520-552 15-42 (91)
147 1x61_A Thyroid receptor intera 21.9 56 0.0019 24.9 2.8 13 545-557 53-65 (72)
148 1x63_A Skeletal muscle LIM-pro 21.6 74 0.0025 24.9 3.5 40 520-571 15-54 (82)
149 2dj7_A Actin-binding LIM prote 21.4 46 0.0016 26.5 2.2 41 518-571 13-53 (80)
150 2dar_A PDZ and LIM domain prot 21.1 44 0.0015 26.9 2.1 40 518-571 23-62 (90)
151 2d8x_A Protein pinch; LIM doma 21.0 39 0.0013 25.8 1.6 36 521-570 6-41 (70)
No 1
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2e-13 Score=111.73 Aligned_cols=54 Identities=35% Similarity=0.817 Sum_probs=47.6
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
...+..+|+||+++++.++ .+..+||+|.||.+||++|++.+.+||+||++++|
T Consensus 19 ~~~~~~~C~IC~~~~~~~~---~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQ---LLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTC---EEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCC---eEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3456789999999987654 67789999999999999999999999999999976
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.36 E-value=3.6e-13 Score=103.32 Aligned_cols=51 Identities=25% Similarity=0.790 Sum_probs=44.3
Q ss_pred cccccccccccccccccCCCCeEEcC-CCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTP-CDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtP-C~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
+++.+|+||+++++.++ ....+| |+|.||.+||++|++.+.+||+||++++
T Consensus 3 ~~~~~C~IC~~~~~~~~---~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGE---EARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTS---CCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCC---ceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45679999999997654 456777 9999999999999999999999999875
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.6e-13 Score=109.02 Aligned_cols=54 Identities=26% Similarity=0.776 Sum_probs=46.8
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
+.+...+|+||++++..+. ...++||+|.||.+||++|++.+.+||+||+++.+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~---~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRD---ELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSS---CEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCC---cEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 3456789999999987654 56778999999999999999999999999999865
No 4
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.34 E-value=4.3e-13 Score=114.26 Aligned_cols=53 Identities=30% Similarity=0.742 Sum_probs=46.6
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
.+.+.+|+||+++++.++ ....+||+|.||..||.+|++.+.+||+||++++|
T Consensus 37 ~~~~~~C~IC~~~~~~~~---~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGD---VATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTC---EEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCC---cEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 346678999999987654 57789999999999999999999999999999975
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=8e-13 Score=106.15 Aligned_cols=54 Identities=28% Similarity=0.771 Sum_probs=46.6
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
+.+...+|+||++.++.+. ....+||+|.||..||.+|++.+.+||+||+++.+
T Consensus 10 ~~~~~~~C~IC~~~~~~~~---~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGE---DVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSS---CEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCC---cEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 4456789999999986543 57789999999999999999999999999998754
No 6
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.32 E-value=8.7e-13 Score=101.04 Aligned_cols=52 Identities=27% Similarity=0.686 Sum_probs=45.4
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
....+|+||++++..++ +..+.+||+|.||.+|+++|++.+.+||+||++++
T Consensus 3 ~~~~~C~IC~~~~~~~~--~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSR--VVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTT--SCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCC--cCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45689999999986543 36788999999999999999999999999999986
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=108.90 Aligned_cols=53 Identities=25% Similarity=0.675 Sum_probs=42.1
Q ss_pred ccccccccccccccc--------cCCCCeEEc-CCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLM--------QRSNDCMVT-PCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 519 ~~~~CaICle~~e~~--------~~~~~~~vt-PC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
++.+|+||+++++.+ ...+....+ +|+|.||.+||++|++.+.+||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 467899999998652 111234444 59999999999999999999999999875
No 8
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.29 E-value=1.4e-12 Score=107.18 Aligned_cols=53 Identities=28% Similarity=0.802 Sum_probs=46.2
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
......+|+||++.++.+. ....+||+|.||.+||.+|++.+.+||+||+++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~---~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGE---SVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTS---CEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred cCCCCCCCeeCCccccCCC---CEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 3456789999999997654 5678899999999999999999999999999875
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.2e-12 Score=101.26 Aligned_cols=57 Identities=30% Similarity=0.603 Sum_probs=47.6
Q ss_pred CCcccccccccccccccccC-CCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQR-SNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~-~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
...+..+|+||++.+..+.. .+.+..++|+|.||.+||++|++.+.+||+||.++.+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34567899999999976532 2345789999999999999999999999999999864
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.23 E-value=4.3e-12 Score=102.03 Aligned_cols=56 Identities=30% Similarity=0.612 Sum_probs=46.6
Q ss_pred Cccccccccccccccccc-CCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQ-RSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~-~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
.+++.+|+||++.+..+. ..+..+.++|+|.||.+|+++|++.+.+||+||+++.+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 345689999999997652 22355789999999999999999999999999998753
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.21 E-value=5.3e-12 Score=99.17 Aligned_cols=54 Identities=30% Similarity=0.631 Sum_probs=45.4
Q ss_pred cccccccccccccccc-CCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQ-RSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 519 ~~~~CaICle~~e~~~-~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
++.+|+||++.++.+. ..+....++|+|.||.+|+++|++.+.+||+||+++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 4578999999997652 22356789999999999999999999999999998863
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.18 E-value=1.3e-11 Score=108.60 Aligned_cols=53 Identities=30% Similarity=0.649 Sum_probs=41.6
Q ss_pred ccccccccccccccccC------------CCCeEEcCCCCcccHhhHHHHH-----hcCCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQR------------SNDCMVTPCDHFFHSGCLQRWM-----DIKMECPTCRRPLP 571 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~------------~~~~~vtPC~H~FH~~CL~~Wl-----~~k~~CP~CR~~LP 571 (573)
.+.+|+||+++++.+.. ......+||+|.||.+||++|+ +.+.+||+||+.+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 45699999999965421 1133478999999999999999 45679999998763
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.17 E-value=1.5e-11 Score=108.34 Aligned_cols=52 Identities=27% Similarity=0.615 Sum_probs=43.2
Q ss_pred cccccccccccccccc------------CCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQ------------RSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 519 ~~~~CaICle~~e~~~------------~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
.+..|+||+++++.+. +....+.++|+|.||..||.+|++.+.+||+||+++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 4678999999997541 112357789999999999999999999999999975
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.14 E-value=1.6e-11 Score=98.10 Aligned_cols=50 Identities=30% Similarity=0.731 Sum_probs=43.1
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
+...+|+||++.+.. ..+.+||+|.||.+|+.+|++.+.+||+||+++..
T Consensus 3 ~~~~~C~IC~~~~~~-----~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN-----YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS-----CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC-----CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 346789999999753 24689999999999999999999999999998753
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.3e-11 Score=97.55 Aligned_cols=49 Identities=24% Similarity=0.628 Sum_probs=42.7
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
..+..+|+||++.+.. .+.+||+|.||..||++|+..+..||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~------~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH------PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSS------EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCC------CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 4556899999998753 457899999999999999999999999999875
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4.5e-11 Score=97.00 Aligned_cols=51 Identities=24% Similarity=0.433 Sum_probs=43.1
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
+.++...|+||++.+..+ ...++|+|.||.+||++|++.+..||+||+++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA-----TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC-----EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred hcCCCCCCCCCChHHHCc-----CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 445678999999998643 234599999999999999999999999999875
No 17
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.07 E-value=1.5e-11 Score=110.28 Aligned_cols=52 Identities=27% Similarity=0.615 Sum_probs=1.1
Q ss_pred cccccccccccccccc------------CCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQ------------RSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 519 ~~~~CaICle~~e~~~------------~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
.++.|+||+++++.+. +....+.++|+|.||..||.+|++.+.+||+||+++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 4579999999997531 111334569999999999999999999999999975
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=9.9e-11 Score=97.75 Aligned_cols=54 Identities=22% Similarity=0.508 Sum_probs=44.9
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC---CCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK---MECPTCRRPLP 571 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k---~~CP~CR~~LP 571 (573)
...+..+|+||++.+...+ ...+.+||+|.||..|+++|++.+ ..||+||+++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~--~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQ--LRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTS--SCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hccCCCCCccCCccccccC--CCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3456789999999987643 236789999999999999999876 79999999764
No 19
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=2.5e-11 Score=97.66 Aligned_cols=50 Identities=30% Similarity=0.810 Sum_probs=43.3
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
+..+..+|+||++.+.. +.+||+|.||..|+.+|++.+.+||+||+++.+
T Consensus 11 ~~~~~~~C~IC~~~~~~-------~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-------LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-------EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred cCCCCCCCeeCCcCccC-------cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 34557899999998742 689999999999999999999999999998864
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=8e-11 Score=97.55 Aligned_cols=50 Identities=26% Similarity=0.554 Sum_probs=43.1
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
+.+....|+||++.+.. ..++||+|.||..|+.+|++.+..||+||.+++
T Consensus 11 ~~~~~~~C~IC~~~~~~------p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQN------PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCS------EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcC------eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34556799999999854 357999999999999999999999999999874
No 21
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=9.2e-11 Score=98.19 Aligned_cols=52 Identities=31% Similarity=0.685 Sum_probs=42.7
Q ss_pred CCcccccccccccccccccCCCCeEEcCCC-----CcccHhhHHHHHhcC--CCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCD-----HFFHSGCLQRWMDIK--MECPTCRRPLP 571 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~-----H~FH~~CL~~Wl~~k--~~CP~CR~~LP 571 (573)
......+|.||+++++.++ .+++||+ |.||.+||++|+..+ .+||+||.+++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~----~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDES----PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSS----CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCCeEcCccccCCC----eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 4455689999999986432 3579997 999999999999875 58999999875
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.4e-10 Score=92.41 Aligned_cols=51 Identities=18% Similarity=0.434 Sum_probs=42.2
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh-cCCCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD-IKMECPTCRRPLPP 572 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~-~k~~CP~CR~~LPP 572 (573)
...+...|+||++.+..+ ..++|+|.||..|+++|++ .+..||+||+++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSP------KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSC------CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCe------eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 345678999999998654 3589999999999999994 56789999998853
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.6e-10 Score=93.40 Aligned_cols=50 Identities=20% Similarity=0.512 Sum_probs=42.2
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh---cCCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD---IKMECPTCRRPLP 571 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~---~k~~CP~CR~~LP 571 (573)
+.++...|+||++.+.. .+.+||+|.||.+|+.+|++ .+..||+||+++.
T Consensus 16 ~~~~~~~C~IC~~~~~~------~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 16 KLQEEVICPICLDILQK------PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCBCTTTCSBCSS------EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred hCccCCEeccCCcccCC------eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 44567899999998863 35789999999999999997 4568999999885
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.02 E-value=7.3e-11 Score=107.80 Aligned_cols=47 Identities=34% Similarity=0.850 Sum_probs=41.6
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
.+..|+||++.+.. ..++||||.||..||.+|+..+.+||+||.+++
T Consensus 52 ~~~~C~iC~~~~~~------~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIE------AVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSS------EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred ccCCCcccCcccCC------ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45679999999853 457899999999999999999999999999885
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.00 E-value=2.1e-10 Score=93.73 Aligned_cols=50 Identities=22% Similarity=0.500 Sum_probs=42.1
Q ss_pred CCcccccccccccccccccCCCCeEEcC-CCCcccHhhHHHHHhcC--CCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTP-CDHFFHSGCLQRWMDIK--MECPTCRRPLP 571 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtP-C~H~FH~~CL~~Wl~~k--~~CP~CR~~LP 571 (573)
+..+...|+||++.+..+ +.+| |+|.||..||++|++.+ ..||+||+++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p------~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA------VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC------EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCC------eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 445678999999998643 5689 99999999999999865 68999999753
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.98 E-value=3e-10 Score=93.82 Aligned_cols=50 Identities=28% Similarity=0.671 Sum_probs=42.8
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc------CCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI------KMECPTCRRPLP 571 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~------k~~CP~CR~~LP 571 (573)
+..+..+|+||++.+..+ +.+||+|.||..|+.+|++. +..||+||.++.
T Consensus 15 ~~~~~~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEP------VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCCTTTSCTTTCSCCSSC------EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred hCccCCCCcCCChhhCcc------eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 445678999999998643 47899999999999999987 678999999875
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.96 E-value=1.5e-10 Score=94.85 Aligned_cols=50 Identities=20% Similarity=0.491 Sum_probs=42.4
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc-------CCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI-------KMECPTCRRPLP 571 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~-------k~~CP~CR~~LP 571 (573)
+.++..+|+||++.+..+ +.+||+|.||.+|+.+|++. +..||+||.++.
T Consensus 8 ~~~~~~~C~IC~~~~~~p------~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEP------LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCEETTTTEECSSC------CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hcccCCCCcCCCcccCCe------eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 345678999999998643 36899999999999999987 678999999885
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.95 E-value=3.2e-10 Score=93.00 Aligned_cols=49 Identities=16% Similarity=0.427 Sum_probs=42.3
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc-CCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI-KMECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~-k~~CP~CR~~LP 571 (573)
..+...|+||++.+.. .+++||||.||..||++|++. +.+||+||+++.
T Consensus 5 ~~~~~~C~IC~~~~~~------Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD------PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSS------EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccC------CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 3457899999999864 357899999999999999987 789999999874
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=3.8e-10 Score=93.16 Aligned_cols=50 Identities=24% Similarity=0.578 Sum_probs=42.7
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc------CCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI------KMECPTCRRPLP 571 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~------k~~CP~CR~~LP 571 (573)
+..+..+|+||++.+..+ +.+||+|.||.+|+.+|++. +..||+||.++.
T Consensus 15 ~~~~~~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQP------LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCTTTCSCCSSC------BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HccCCCCCCCCCcccCCc------eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 445678999999998643 46899999999999999987 789999999875
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.95 E-value=1.9e-10 Score=99.48 Aligned_cols=49 Identities=29% Similarity=0.790 Sum_probs=42.2
Q ss_pred CcccccccccccccccccCCCCeEE-cCCCCcccHhhHHHHHhcC-CCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMV-TPCDHFFHSGCLQRWMDIK-MECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~v-tPC~H~FH~~CL~~Wl~~k-~~CP~CR~~LP 571 (573)
..+...|+||++.+..+ +. ++|||.||..||.+|++.+ ..||+||.++.
T Consensus 19 l~~~~~C~IC~~~~~~p------~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDA------RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHHTBCTTTCSBCSSE------EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCccCCccccCc------cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 35678999999998643 45 9999999999999999987 69999999875
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.95 E-value=3.3e-10 Score=101.00 Aligned_cols=55 Identities=31% Similarity=0.623 Sum_probs=45.9
Q ss_pred ccccccccccccccccc-CCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQ-RSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~-~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
.+..+|+||++.++.+. +.+....++|||.||.+||++|++.+.+||+||+++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 45679999999997651 12355789999999999999999999999999998753
No 32
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=6e-10 Score=88.40 Aligned_cols=51 Identities=25% Similarity=0.507 Sum_probs=40.8
Q ss_pred cccccccccc-ccccccCCCCeEEcCCCCcccHhhHHHHHhc-CCCCCCCCCCCC
Q 008227 519 HTTDCVICMT-AIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI-KMECPTCRRPLP 571 (573)
Q Consensus 519 ~~~~CaICle-~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~-k~~CP~CR~~LP 571 (573)
++..|+||++ .+..+. ...+.++|||.||.+|+++|+.. +..||+||+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~--~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPS--LKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSS--CCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCc--cCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 3578999999 665543 23467899999999999999764 468999999875
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.91 E-value=3.7e-10 Score=97.02 Aligned_cols=50 Identities=24% Similarity=0.689 Sum_probs=41.9
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
..+...|+||++.+..+. ..++|||.||..|+.+|++.+..||+||.++.
T Consensus 19 ~~~~~~C~IC~~~~~~p~-----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAM-----IIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHHHTBCTTTCSBCSSEE-----ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccCChhhCCcC-----EECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 345689999999986432 23489999999999999999999999999875
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.89 E-value=5.3e-10 Score=99.99 Aligned_cols=49 Identities=29% Similarity=0.605 Sum_probs=41.4
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC-CCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK-MECPTCRRPLPP 572 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k-~~CP~CR~~LPP 572 (573)
.....|+||++.+.. .+.+||||.||..||.+|+..+ ..||+||.++.+
T Consensus 50 ~~~~~C~IC~~~~~~------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFR------PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSS------EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcC------cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 456789999999864 3578999999999999999855 489999998854
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.88 E-value=5.1e-10 Score=99.75 Aligned_cols=56 Identities=30% Similarity=0.605 Sum_probs=46.6
Q ss_pred Cccccccccccccccccc-CCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQ-RSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~-~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
.++..+|+||++.++.+. ..+..+.++|+|.||..|+++|++.+.+||+||+++++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 356788999999997642 12345788999999999999999999999999998863
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.88 E-value=8.1e-10 Score=96.46 Aligned_cols=50 Identities=22% Similarity=0.491 Sum_probs=42.3
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
..+...|+||++.+..+ +..++|||.||..||.+|++.+..||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDA-----TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp HGGGTBCTTTSSBCSSE-----EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred cCCcCCCccCChHHhCc-----CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 35678999999998643 233499999999999999999999999999875
No 37
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.2e-09 Score=86.01 Aligned_cols=45 Identities=22% Similarity=0.541 Sum_probs=38.0
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh---cCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD---IKMECPTC 566 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~---~k~~CP~C 566 (573)
..++...|+||++.+.. .+.+||+|.||.+||++|++ .+..||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~------p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQK------PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSS------CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCC------eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 44567899999999864 35789999999999999998 45689998
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.4e-09 Score=83.76 Aligned_cols=45 Identities=24% Similarity=0.809 Sum_probs=37.3
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh---cCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD---IKMECPTC 566 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~---~k~~CP~C 566 (573)
+.++...|+||++.+..+ +.+||+|.||.+||++|++ .+..||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEP------VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSC------CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCcc------EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678999999998654 3689999999999999954 56789998
No 39
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=1.4e-09 Score=89.85 Aligned_cols=50 Identities=22% Similarity=0.503 Sum_probs=41.7
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC--CCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK--MECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k--~~CP~CR~~LP 571 (573)
.+...+|+||.+.+..++ ....|+|.||..||.+|++.+ .+||.||++.+
T Consensus 12 ~~~i~~C~IC~~~i~~g~-----~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQ-----SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSSCBCSSSCCBCSSSE-----ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred cCCCCcCcchhhHcccCC-----ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 355689999999997543 234899999999999999877 89999999864
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.84 E-value=1.1e-09 Score=95.51 Aligned_cols=48 Identities=29% Similarity=0.749 Sum_probs=40.6
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC---CCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK---MECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k---~~CP~CR~~LP 571 (573)
.....|+||++.+..+ ..+||+|.||..|+.+|+..+ ..||+||.++.
T Consensus 19 ~~~~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 19 QKILECPICLELIKEP------VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HHHTSCSSSCCCCSSC------CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred cCCCCCcccChhhcCe------EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4567899999988643 368999999999999999865 48999999875
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-09 Score=91.33 Aligned_cols=49 Identities=22% Similarity=0.522 Sum_probs=41.2
Q ss_pred CCcccccccccccccccccCCCCeEEcC-CCCcccHhhHHHHHhcC--CCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTP-CDHFFHSGCLQRWMDIK--MECPTCRRPL 570 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtP-C~H~FH~~CL~~Wl~~k--~~CP~CR~~L 570 (573)
+..+...|+||++.+..+ +.+| |||.||..||.+|+..+ ..||+||.++
T Consensus 9 ~~~~~~~C~IC~~~~~~p------~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA------VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSC------EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCc------eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 345678999999998643 5789 99999999999999753 6899999986
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.80 E-value=1.6e-09 Score=101.58 Aligned_cols=49 Identities=29% Similarity=0.612 Sum_probs=40.9
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc-CCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI-KMECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~-k~~CP~CR~~LP 571 (573)
.....|+||++.+..+ +..+||+|.||..||.+|+.. +..||+||.++.
T Consensus 52 ~~~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKNT-----MTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSSE-----EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhhCc-----CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 4567999999998643 234499999999999999987 788999999874
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.79 E-value=2.3e-09 Score=95.20 Aligned_cols=52 Identities=27% Similarity=0.529 Sum_probs=43.6
Q ss_pred cCCCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCC-CCCCCCCCCC
Q 008227 514 DQGTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKM-ECPTCRRPLP 571 (573)
Q Consensus 514 ~~~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~-~CP~CR~~LP 571 (573)
.+..++...|+||++.+..+ ..++|+|.||..||.+|++.+. +||+||.++.
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 12 DPPLESKYECPICLMALREA------VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSE------EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred ccCCCCCCCCCcCChhhcCe------EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 34556678999999998643 5789999999999999998765 9999999875
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.78 E-value=1.9e-09 Score=100.28 Aligned_cols=49 Identities=31% Similarity=0.604 Sum_probs=41.4
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCC-CCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKM-ECPTCRRPLPP 572 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~-~CP~CR~~LPP 572 (573)
.....|+||++.+..+ .++||+|.||..||.+|+..+. .||+||.++.+
T Consensus 76 ~~~~~C~IC~~~~~~p------v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQP------VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHHTBCTTTSSBCSSE------EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCEeecCChhhcCC------EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 3567899999998643 5799999999999999998764 89999998853
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.72 E-value=1.7e-09 Score=95.33 Aligned_cols=49 Identities=29% Similarity=0.687 Sum_probs=41.5
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc-CCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI-KMECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~-k~~CP~CR~~LP 571 (573)
..++..|+||++.+.. ...+||+|.||..||.+|++. +..||+||.++.
T Consensus 12 ~~~~~~C~iC~~~~~~------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 12 SLSECQCGICMEILVE------PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CHHHHBCTTTCSBCSS------CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCCccCCcccCc------eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3456899999999864 357899999999999999976 678999999863
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.71 E-value=3.8e-09 Score=93.19 Aligned_cols=48 Identities=29% Similarity=0.680 Sum_probs=41.5
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc-CCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI-KMECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~-k~~CP~CR~~LP 571 (573)
.+...|+||++.+..+ +.++|||.||..||.+|++. +..||+||.++.
T Consensus 21 ~~~~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 21 VKSISCQICEHILADP------VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHHTBCTTTCSBCSSE------EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCCCCCCCCcHhcCc------EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 4567999999998643 46899999999999999987 779999999875
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.70 E-value=8e-09 Score=85.89 Aligned_cols=52 Identities=23% Similarity=0.580 Sum_probs=40.5
Q ss_pred CCcccccccccccccccccCCCCeEEc--CCCCcccHhhHHHHHh-cCCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVT--PCDHFFHSGCLQRWMD-IKMECPTCRRPLP 571 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vt--PC~H~FH~~CL~~Wl~-~k~~CP~CR~~LP 571 (573)
+.+++.+|+||+++++.++ ...+ +|||.||..|+.++++ .+..||.||+++.
T Consensus 7 ~~~~~~~CpICle~~~~~d----~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDD----INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTT----TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred ccccCCcCCccCccCcccc----ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 3456789999999885432 2234 4999999999999985 4578999999875
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.68 E-value=7.9e-09 Score=109.59 Aligned_cols=46 Identities=30% Similarity=0.787 Sum_probs=40.4
Q ss_pred cccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh-cCCCCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD-IKMECPTCRRPLP 571 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~-~k~~CP~CR~~LP 571 (573)
..+|+||++.+. +.+.+||||.||..|+.+|++ .+.+||+||+++.
T Consensus 332 ~~~C~ICle~~~------~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDK------DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBC------CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCcCCC------CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 479999999874 456899999999999999998 6789999999874
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.68 E-value=4.4e-09 Score=81.50 Aligned_cols=47 Identities=32% Similarity=0.764 Sum_probs=39.1
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
++.+...|+||++.+..+ +.+||+|.||..|+.+| +..||+||+++.
T Consensus 2 ee~~~~~C~IC~~~~~~p------~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 2 EEFQFLRCQQCQAEAKCP------KLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CSCCCSSCSSSCSSCBCC------SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred CcccCCCceEeCCccCCe------EEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 345678899999998754 47999999999999884 678999999874
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.64 E-value=1.3e-08 Score=81.21 Aligned_cols=48 Identities=23% Similarity=0.558 Sum_probs=39.9
Q ss_pred cccccccccccccccccCCCCeEEc--CCCCc-ccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVT--PCDHF-FHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vt--PC~H~-FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
+++.+|+||++... +...+ ||||. |+.+|+++|.+.+..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~------~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPK------NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCS------CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCC------CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 35678999999753 33444 99999 899999999998899999999874
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.64 E-value=1.3e-08 Score=85.75 Aligned_cols=49 Identities=12% Similarity=0.006 Sum_probs=43.2
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
......|+||++.+..+ +++||||.|+..||++|+..+.+||.||.++.
T Consensus 11 ~p~~~~CpI~~~~m~dP------V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP------VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CCTTTBCTTTCSBCSSE------EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CchheECcccCchhcCC------eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 34578999999998644 58999999999999999998899999999875
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.63 E-value=1.5e-08 Score=88.10 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=43.7
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
......|+||++.+..| +++||||.|+..||++|+..+.+||.||.++..
T Consensus 26 ~p~~~~CpI~~~~m~dP------V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP------VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSSE------EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccCC------eECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 34578999999998644 589999999999999999988999999998853
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.59 E-value=2.6e-08 Score=86.27 Aligned_cols=49 Identities=18% Similarity=0.087 Sum_probs=43.2
Q ss_pred CcccccccccccccccccCCCCeEEcCCC-CcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCD-HFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~-H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
..+...|+||++.+..+ +++||| |.|++.||++|+..+.+||+||.++.
T Consensus 19 ~p~~~~CpI~~~~m~dP------V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP------VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CCTTTBCTTTCSBCSSE------EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred CcHhcCCcCccccccCC------eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 34578999999998644 589999 99999999999998889999999885
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.57 E-value=1.1e-08 Score=94.12 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=41.7
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCC-CCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKM-ECPTCRRPL 570 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~-~CP~CR~~L 570 (573)
..++...|+||++.+..+ +.++|||.||..||.+|++.+. .||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~p------v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP------FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE------EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCc------EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 446678999999998644 5689999999999999998664 899999975
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.55 E-value=3e-08 Score=78.83 Aligned_cols=49 Identities=18% Similarity=0.451 Sum_probs=40.2
Q ss_pred CcccccccccccccccccCCCCeEEc--CCCCc-ccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVT--PCDHF-FHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vt--PC~H~-FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
.+...+|.||++... +...+ ||||. |+.+|+.+|.+.+..||+||+++.
T Consensus 4 ~~~~~~C~IC~~~~~------~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 4 QNLLKPCSLCEKRPR------DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGGSBCTTTSSSBS------CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCcCCCCcccCCcCC------CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 345679999999753 22344 99998 999999999988889999999874
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.54 E-value=1.5e-08 Score=89.87 Aligned_cols=47 Identities=23% Similarity=0.577 Sum_probs=39.9
Q ss_pred CcccccccccccccccccCCCCeEEc-CCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVT-PCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vt-PC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
..+...|+||++.+..+ ..+ ||||.||..||.+|+. ..||+||.++.
T Consensus 19 l~~~~~C~IC~~~~~~p------v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREP------VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HHHTTSCSSSCSCCSSC------BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred chhCCCCCCCChHhhCc------cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 34578999999998644 356 9999999999999998 78999999874
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.51 E-value=2.4e-08 Score=81.65 Aligned_cols=44 Identities=25% Similarity=0.579 Sum_probs=37.7
Q ss_pred cccccccccccccccccCCCCeEEcCCCCc-ccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHF-FHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~-FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
++...|+||++.+. +...+||+|. ||..|+.+| ..||+||+++.
T Consensus 22 ~~~~~C~iC~~~~~------~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 22 QEEKLCKICMDRNI------AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHHTBCTTTSSSBC------CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred ccCCCCCCCCCCCC------CEEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 45678999999864 4567899999 999999999 78999999875
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=4.2e-08 Score=97.86 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=41.7
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC-CCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK-MECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k-~~CP~CR~~LP 571 (573)
......|+||++.+..| +++||||.||..||++|+..+ .+||+||.++.
T Consensus 205 ~~~~~~c~i~~~~~~dP------v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP------CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSBCSSE------EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCcccCCcCcCCHhcCC------eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 34567899999998644 589999999999999999864 45999999986
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.45 E-value=6.7e-08 Score=90.75 Aligned_cols=53 Identities=26% Similarity=0.530 Sum_probs=44.0
Q ss_pred cCCCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC-CCCCCCCCCCCC
Q 008227 514 DQGTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK-MECPTCRRPLPP 572 (573)
Q Consensus 514 ~~~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k-~~CP~CR~~LPP 572 (573)
.+..++...|+||++.+..+ +.++|||.||..|+.+|++.+ ..||+||.++.+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p------v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREA------VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSE------EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCCCChhhcCc------EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 34556778999999998643 468999999999999999865 499999998753
No 60
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.44 E-value=3.4e-08 Score=102.62 Aligned_cols=55 Identities=24% Similarity=0.493 Sum_probs=41.4
Q ss_pred CcccccccccccccccccCC--CCeEEcCCCCcccHhhHHHHHhcC-----------CCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRS--NDCMVTPCDHFFHSGCLQRWMDIK-----------MECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~--~~~~vtPC~H~FH~~CL~~Wl~~k-----------~~CP~CR~~LP 571 (573)
++...+|+||++.+...... ..+...+|+|.||..||.+|++.. .+||.||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45678999999998752211 123346899999999999999742 47999999763
No 61
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.38 E-value=1.6e-07 Score=74.19 Aligned_cols=49 Identities=22% Similarity=0.603 Sum_probs=38.4
Q ss_pred CcccccccccccccccccCCCCeEEcCCCC-----cccHhhHHHHHhc--CCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDH-----FFHSGCLQRWMDI--KMECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H-----~FH~~CL~~Wl~~--k~~CP~CR~~LP 571 (573)
+++...|.||+++-+ + . .++||.+ .||.+||++|++. +.+||+||.+++
T Consensus 3 ~~~~~~CrIC~~~~~--~---~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWICNEELG--N---E-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TCSCCEETTTTEECS--C---C-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCEeEEeecCCC--C---c-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456789999999721 1 2 3689764 8999999999975 578999999875
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=2e-07 Score=79.77 Aligned_cols=47 Identities=17% Similarity=0.455 Sum_probs=38.9
Q ss_pred CcccccccccccccccccCCCCeEEcC-CCCcccHhhHHHHHhcC------CCCCC--CCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTP-CDHFFHSGCLQRWMDIK------MECPT--CRRP 569 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtP-C~H~FH~~CL~~Wl~~k------~~CP~--CR~~ 569 (573)
......|+||++.+..+ +++| |||.|+..||.+|+..+ .+||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~dP------V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKP------VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSE------EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCC------EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 34568899999998644 5786 99999999999999753 58999 9865
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.8e-07 Score=76.50 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=36.6
Q ss_pred cccccccccccccccccCCCCeEEcCCCCc-ccHhhHHHHHhcCCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHF-FHSGCLQRWMDIKMECPTCRRPLPP 572 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~-FH~~CL~~Wl~~k~~CP~CR~~LPP 572 (573)
++..+|+||++.+.. ...+||+|. ||..|+++ ...||+||+++..
T Consensus 23 ~~~~~C~IC~~~~~~------~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIA------IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCC------BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCC------EEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 456789999998643 457899999 99999975 4789999998753
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.30 E-value=1.5e-07 Score=80.06 Aligned_cols=52 Identities=21% Similarity=0.696 Sum_probs=40.4
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc--------CCCCCC--CCCC--CCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI--------KMECPT--CRRP--LPP 572 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~--------k~~CP~--CR~~--LPP 572 (573)
....+|+||++++..++ -...++|+|.||.+|+.++++. ...||. ||.. ++|
T Consensus 3 ~~~~~C~IC~~~~~~~~---~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQ---MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp CSBCCCSSSCCCCBGGG---EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCCcCCcccCccccccc---ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 34678999999986553 2334589999999999999874 247999 9998 654
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.27 E-value=3.8e-07 Score=87.27 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=41.8
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC-CCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK-MECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k-~~CP~CR~~LP 571 (573)
......|+||++.+.. .+++||||.|+..||.+|+..+ .+||.||.++.
T Consensus 103 ip~~f~CPI~~elm~D------PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 103 IPDYLCGKISFELMRE------PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCGGGBCTTTCSBCSS------EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CcHhhcccCccccCCC------CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 3567899999999864 4688999999999999999864 46999999885
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=6.5e-07 Score=72.24 Aligned_cols=46 Identities=28% Similarity=0.791 Sum_probs=37.6
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCc-ccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHF-FHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~-FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
...+...|.||++... +...+||+|. ||..|+.. ...||+||+++.
T Consensus 11 ~~~~~~~C~IC~~~~~------~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTV------NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp SCCCSSCCSSSSSSCC------CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred cCCCCCCCCCcCcCCC------CEEEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 3455789999999753 4578999999 99999984 478999999874
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.16 E-value=4.1e-07 Score=75.50 Aligned_cols=44 Identities=23% Similarity=0.628 Sum_probs=36.6
Q ss_pred cccccccccccccccccCCCCeEEcCCCCc-ccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHF-FHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~-FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
.+...|+||++... +.+.+||||. ||..|+.+| ..||+||.++.
T Consensus 16 ~~~~~C~IC~~~~~------~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 16 KEAMLCMVCCEEEI------NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHHTBCTTTSSSBC------CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCCEeEEeCcccC------cEEEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 34578999999753 4568999999 999999987 38999999864
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.99 E-value=1.4e-06 Score=91.45 Aligned_cols=44 Identities=25% Similarity=0.683 Sum_probs=37.7
Q ss_pred cccccccccccccccccCCCCeEEcCCCCc-ccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHF-FHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~-FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
++...|+||++.+. +...+||||. ||..|+..| ..||+||.++.
T Consensus 293 ~~~~~C~IC~~~~~------~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEV------SVVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBC------CEEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCC------ceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 45689999999874 3457899999 999999998 68999999875
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.96 E-value=2.1e-06 Score=67.92 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=39.6
Q ss_pred cccccccccccccccCCCCeEEc-CCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVT-PCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vt-PC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
...|+||++.++.+ .++ +|||.|.++||++|++.+.+||+++.++.
T Consensus 3 ~~~CpIs~~~m~dP------V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRP------VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSE------EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCC------EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 35799999998743 567 89999999999999998888999999874
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.90 E-value=3.3e-06 Score=85.04 Aligned_cols=51 Identities=20% Similarity=0.494 Sum_probs=41.4
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC--CCCCC--CCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK--MECPT--CRRPLP 571 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k--~~CP~--CR~~LP 571 (573)
.......|+||++.+..|. ..+.|||.|++.||.+|++.+ ..||+ ||+.+.
T Consensus 177 ~~~~el~CPIcl~~f~DPV-----ts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPL-----ISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEE-----EESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CCceeeECcCccCcccCCe-----eeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4567789999999997542 346899999999999999764 47999 998764
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.48 E-value=6.1e-05 Score=65.12 Aligned_cols=45 Identities=27% Similarity=0.586 Sum_probs=37.4
Q ss_pred cccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc-CCCCCCCCCCCC
Q 008227 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI-KMECPTCRRPLP 571 (573)
Q Consensus 522 ~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~-k~~CP~CR~~LP 571 (573)
-|.+|--++..- .++.||+|+||.+|...|.+. .++||.||.++-
T Consensus 3 fC~~C~~Pi~iy-----gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVY-----GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEE-----EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEE-----eeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 588888887653 368999999999999999865 588999999863
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.44 E-value=6.4e-05 Score=74.88 Aligned_cols=48 Identities=23% Similarity=0.543 Sum_probs=39.5
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC--CCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK--MECPTCRRPLP 571 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k--~~CP~CR~~LP 571 (573)
...+|+||.+.+..+. ....|+|.||..|+.+|++.+ ..||.|+.+.|
T Consensus 179 ~i~~C~iC~~iv~~g~-----~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ-----SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCE-----ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCc-----ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 5789999999987543 233499999999999999865 48999998765
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=86.33 E-value=0.37 Score=41.10 Aligned_cols=48 Identities=25% Similarity=0.604 Sum_probs=38.2
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
..+...|-.|--+.+ -.+.=.+|..|..||..-+.....||+|..+||
T Consensus 25 ~~G~~nCKsCWf~~k-------~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK-------GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CSCCCCCCSSCSCCS-------SEEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred ccCcccChhhccccC-------CeeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 445678999987642 123334699999999999999999999999998
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=85.77 E-value=0.61 Score=37.10 Aligned_cols=47 Identities=19% Similarity=0.398 Sum_probs=33.8
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcC----CCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIK----MECPTCRRPL 570 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k----~~CP~CR~~L 570 (573)
.....|.||.+. + +-+.--.|...||..|+...+... =.||.|+..-
T Consensus 10 ~~~~~C~vC~~~---~---~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---T---DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---T---TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---C---eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345679999753 1 234445699999999998887643 3699997654
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=85.57 E-value=0.4 Score=40.35 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=25.8
Q ss_pred cccccccccccccccCCCCeEEcCCCCcccHhhHHH-HH
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQR-WM 557 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~-Wl 557 (573)
+..|.||.+++..+. ....++|+|.|+..|++. |-
T Consensus 3 e~~C~~C~~~~~~~a---v~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDA---VKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBC---CEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCc---eEECCcCChHHhHHHCHHHhc
Confidence 478999998643221 223489999999999998 54
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=79.45 E-value=1.8 Score=50.73 Aligned_cols=47 Identities=13% Similarity=0.076 Sum_probs=39.1
Q ss_pred ccccccccccccccccCCCCeEEcCCC-CcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCD-HFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~-H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
+...|+|-.+-+.+ .+++|.| +.|-+.+|++|+..+.+||.=|.++.
T Consensus 890 ~~F~cPIs~~lM~D------PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 890 DEFLDPLMYTIMKD------PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp GGGBCTTTCSBCSS------EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred HHhCCcchhhHHhC------CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 34558888887754 4689997 68999999999998999999999875
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=68.22 E-value=0.91 Score=35.35 Aligned_cols=51 Identities=18% Similarity=0.432 Sum_probs=33.7
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh-----cCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD-----IKMECPTCRRP 569 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~-----~k~~CP~CR~~ 569 (573)
+++...|++|..+.+... .-+..-.|..-||..|+.---. .+-.||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~--~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADE--FWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSS--CEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCC--CEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 355678999998874321 1122346889999999865332 34679999764
No 78
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=63.86 E-value=2.4 Score=36.48 Aligned_cols=48 Identities=25% Similarity=0.694 Sum_probs=31.9
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc----CCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI----KMECPTCR 567 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~----k~~CP~CR 567 (573)
...+..|.+|.+.=+.. +-+.-..|...||..|+...+.. +-.||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~~---~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLL---DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTT---TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCc---CCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 34678899998863221 12445679999999999887642 23466553
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=61.14 E-value=3.8 Score=31.76 Aligned_cols=47 Identities=28% Similarity=0.622 Sum_probs=32.2
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc----CCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI----KMECPTCRR 568 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~----k~~CP~CR~ 568 (573)
+...+..|.+|.+. + +-+..-.|...||..|+..=+.. +-.||.|+.
T Consensus 7 ~~~~~~~C~vC~~~---g---~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG---G---EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCC---S---SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCC---C---cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34566789999873 1 12233358899999999975542 246999975
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=60.72 E-value=4.3 Score=29.98 Aligned_cols=45 Identities=22% Similarity=0.540 Sum_probs=28.7
Q ss_pred cccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc----CCCCCCCCCC
Q 008227 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI----KMECPTCRRP 569 (573)
Q Consensus 522 ~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~----k~~CP~CR~~ 569 (573)
.|.||...-+.+ +-+.--.|...||..|+..=+.. .-.||.|+..
T Consensus 2 ~C~vC~~~~~~~---~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDD---KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCS---CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCC---CEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 488888753211 12333468899999999754432 2359999763
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=58.90 E-value=2.9 Score=32.45 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=32.6
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc----CCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI----KMECPTCRRPL 570 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~----k~~CP~CR~~L 570 (573)
++..+..|.+|.+. + +-+..-.|...||..|+..=+.. +=.||.|+...
T Consensus 5 ~d~~~~~C~vC~~~---g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 5 SDHHMEFCRVCKDG---G---ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCSSCTTTCCC---S---SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred ccCCCCcCCCCCCC---C---CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 34556789999863 1 12223358899999999864443 23599998754
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=58.39 E-value=3.4 Score=33.02 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=33.3
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc----CCCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI----KMECPTCRRPL 570 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~----k~~CP~CR~~L 570 (573)
+......|.+|....+.. .-+..-.|.-.||..|+.--... +-.||.|+..+
T Consensus 14 ~~~~~~~C~~C~~~~~~~---~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 14 WGNQIWICPGCNKPDDGS---PMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SSCEEECBTTTTBCCSSC---CEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred cCCCCcCCCCCCCCCCCC---CEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 445566799998874311 11222368899999999754432 34699997543
No 83
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.15 E-value=7.1 Score=31.61 Aligned_cols=50 Identities=18% Similarity=0.473 Sum_probs=31.5
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh-----cCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD-----IKMECPTCRRPL 570 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~-----~k~~CP~CR~~L 570 (573)
.....| ||..+.+... .-+..-.|..-||..|+.---. .+-.||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~--~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNH--FMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSS--CEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCC--ceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 344566 9988764221 1222346889999999853221 346799998765
No 84
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=50.11 E-value=15 Score=33.38 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=33.5
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh-----------cCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD-----------IKMECPTCRR 568 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~-----------~k~~CP~CR~ 568 (573)
++..+..|.+|.+.= +-+..-.|...||.+||..=+. ..=.||.|+.
T Consensus 59 ~Dg~~d~C~vC~~GG------~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGG------NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCCS------SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCCC------cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 455678999999852 1233446889999999997653 1236999975
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.51 E-value=2.2 Score=32.40 Aligned_cols=47 Identities=23% Similarity=0.579 Sum_probs=31.7
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc----CCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI----KMECPTCRR 568 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~----k~~CP~CR~ 568 (573)
....+..|.+|... + +-+..-.|...||..|+..=+.. +-.||.|+.
T Consensus 5 ~~~~~~~C~vC~~~---g---~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS---G---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS---S---CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC---C---eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34566789999874 1 13334468899999999864443 235888864
No 86
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=47.75 E-value=5.1 Score=31.99 Aligned_cols=45 Identities=31% Similarity=0.627 Sum_probs=27.0
Q ss_pred cccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc-----CCCCCCCCCC
Q 008227 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI-----KMECPTCRRP 569 (573)
Q Consensus 522 ~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~-----k~~CP~CR~~ 569 (573)
.|.+|...-+.++ -+.--.|...||..|+..=+.. .=.||.|+.+
T Consensus 20 ~C~~C~~~~~~~~---ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDK---QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGG---EEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCC---EEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 5667775422111 1222358899999999854432 2369999764
No 87
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=47.16 E-value=9.8 Score=31.95 Aligned_cols=48 Identities=21% Similarity=0.426 Sum_probs=33.4
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc----CCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI----KMECPTCRRP 569 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~----k~~CP~CR~~ 569 (573)
..+.+..|.+|... + +-+..-.|.-.||..|+..=+.. .-.||.|+..
T Consensus 21 ~d~n~~~C~vC~~~---g---~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKP---G---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSS---S---CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCC---C---CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 45567799999974 1 23344468899999999765543 2369999754
No 88
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=46.19 E-value=4.2 Score=31.62 Aligned_cols=43 Identities=23% Similarity=0.429 Sum_probs=31.3
Q ss_pred ccccccccccccccccCCCCeEEcC--CCCcccHhhHHHHHhcCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTP--CDHFFHSGCLQRWMDIKM 561 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtP--C~H~FH~~CL~~Wl~~k~ 561 (573)
....|+-|...++..+.-+...... |+|.|+-.|+.+|-....
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~~ 49 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGS 49 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGT
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCCC
Confidence 3468999999998765433333333 999999999999976543
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=45.43 E-value=24 Score=30.30 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=24.2
Q ss_pred ccccccccccccccc---cCCCCeEEcCCCCcccHhhHH
Q 008227 519 HTTDCVICMTAIDLM---QRSNDCMVTPCDHFFHSGCLQ 554 (573)
Q Consensus 519 ~~~~CaICle~~e~~---~~~~~~~vtPC~H~FH~~CL~ 554 (573)
....|.+|...=+.+ +.++-+.-..|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456899998863221 111234456799999999995
No 90
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.10 E-value=4.6 Score=32.92 Aligned_cols=44 Identities=23% Similarity=0.563 Sum_probs=27.7
Q ss_pred cccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc-----CCCCCCCCC
Q 008227 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI-----KMECPTCRR 568 (573)
Q Consensus 522 ~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~-----k~~CP~CR~ 568 (573)
.|.+|...-+.+ .-+.--.|...||..|+..=+.. .=.||.|+.
T Consensus 28 ~C~vC~~~~~~~---~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPN---MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCST---TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCC---CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678888642211 12223368899999999854432 226999975
No 91
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=44.91 E-value=12 Score=32.51 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=24.1
Q ss_pred cccccccccccc----ccCCCCeEEcCCCCcccHhhHHHH
Q 008227 521 TDCVICMTAIDL----MQRSNDCMVTPCDHFFHSGCLQRW 556 (573)
Q Consensus 521 ~~CaICle~~e~----~~~~~~~~vtPC~H~FH~~CL~~W 556 (573)
..|.+|...-.. ++.++-+.-..|+..||..||+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999886422 112233445679999999999754
No 92
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=44.77 E-value=5.2 Score=39.31 Aligned_cols=45 Identities=31% Similarity=0.622 Sum_probs=25.1
Q ss_pred cccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc-----CCCCCCCCCC
Q 008227 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI-----KMECPTCRRP 569 (573)
Q Consensus 522 ~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~-----k~~CP~CR~~ 569 (573)
.|.+|...=+.+ .-+..-.|...||..|+..=+.. .=.||.|+.+
T Consensus 176 ~C~vC~~~~~~~---~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPD---KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC-----CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCC---CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 577777642111 23334468999999999854432 1259999764
No 93
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=44.21 E-value=23 Score=29.58 Aligned_cols=36 Identities=25% Similarity=0.514 Sum_probs=23.1
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHH
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRW 556 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~W 556 (573)
...+..|.||-.- .... .+-.--|+-+||..||++-
T Consensus 12 ~~~D~~C~VC~~~-t~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVW-TAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCC-CSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccc-cccc---eeccccccccccHhhcccc
Confidence 3467889999742 1111 1112237899999999995
No 94
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=43.31 E-value=4.1 Score=37.65 Aligned_cols=49 Identities=22% Similarity=0.477 Sum_probs=30.4
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHH-----hcCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWM-----DIKMECPTCRR 568 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl-----~~k~~CP~CR~ 568 (573)
.+....| +|....+... .-+..-.|...||..|+.--- ..+-.||.|+.
T Consensus 5 ~~~~~~C-~C~~~~~~~~--~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESK--FYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp --CCEET-TTTEECCTTS--CEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCCcEe-eCCCCCCCCC--CEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 3456788 9998754221 122334688999999995321 12467999974
No 95
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=42.70 E-value=9.7 Score=32.24 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=29.6
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc---CCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI---KMECPTCRRP 569 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~---k~~CP~CR~~ 569 (573)
+...| ||....+.+. -+..-.|.-.||..|+..=... .-.||.|+..
T Consensus 27 d~vrC-iC~~~~~~~~---mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGY---MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSC---EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCc---EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 34567 8977643221 2334468999999998653221 3479999753
No 96
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.98 E-value=3.7 Score=34.54 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=30.7
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc----CCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI----KMECPTCRR 568 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~----k~~CP~CR~ 568 (573)
.+...|.||...-+... -+..-.|...||..|+..=+.. +=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~~~~~---ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDK---LLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGGG---CEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCCC---EEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 44567999998643221 2333468999999999743332 224999864
No 97
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.78 E-value=6.1 Score=31.71 Aligned_cols=48 Identities=21% Similarity=0.451 Sum_probs=30.2
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHHHH---------HhcCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRW---------MDIKMECPTCRRPL 570 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~W---------l~~k~~CP~CR~~L 570 (573)
....| ||....+.. .-+..-.|..-||..|+.-- -..+-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~~---~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 15 NALYC-ICRQPHNNR---FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCS-TTCCCCCSS---CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCEE-ECCCccCCC---CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 34667 898875421 11222368899999998421 12467899997544
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=37.87 E-value=4.1 Score=32.00 Aligned_cols=46 Identities=20% Similarity=0.510 Sum_probs=30.7
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc----CCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI----KMECPTCRR 568 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~----k~~CP~CR~ 568 (573)
...+..|.||... + +-+..-.|...||..|+..=+.. .=.||.|+.
T Consensus 5 ~~~~~~C~vC~~~---g---~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDG---G---ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCC---S---SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCCC---C---CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 3456889999864 1 12333468899999999854432 235998854
No 99
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=37.59 E-value=24 Score=31.61 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=31.8
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHH------h-----cCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWM------D-----IKMECPTCRR 568 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl------~-----~k~~CP~CR~ 568 (573)
++..+..|.+|-+.=+ -+.--.|-..||.+||..=+ + ..=.|+.|+.
T Consensus 53 ~Dg~~~~C~vC~dGG~------LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 53 SDGMDEQCRWCAEGGN------LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TTSCBSSCTTTCCCSE------EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCcCeecCCCCe------eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4556678999997521 22233588999999999752 1 1247999964
No 100
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=37.55 E-value=17 Score=28.53 Aligned_cols=36 Identities=22% Similarity=0.534 Sum_probs=22.9
Q ss_pred CcccccccccccccccccCCCCeEEc-CCCCcccHhhHH
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVT-PCDHFFHSGCLQ 554 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vt-PC~H~FH~~CL~ 554 (573)
.+....|.+|..++.... .-+..- .|.--||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~--~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQ--DAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTS--CEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCC--CeEecccCccccCchhccC
Confidence 455678999999976432 122233 688999999974
No 101
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=37.40 E-value=29 Score=28.33 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=29.0
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHH
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRW 556 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~W 556 (573)
+.+...|.+|...|..-.+ +-..-.||++||.+|....
T Consensus 18 d~~~~~C~~C~~~Fs~~~R--rHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVR--RHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSC--CEECTTTCCEECTGGGCCE
T ss_pred CCCCCCCcCcCCccccchh--cccccCCCcEEChHHhCCe
Confidence 3456799999999976543 4445679999999997654
No 102
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=36.93 E-value=19 Score=29.96 Aligned_cols=38 Identities=16% Similarity=0.433 Sum_probs=29.3
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHH
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWM 557 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl 557 (573)
.+...|.+|...|..-. ++...-.||++||..|.....
T Consensus 18 ~~~~~C~~C~~~F~~~~--RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTK--RRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSS--CCEECTTTCCEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchh--hCccccCCCCEECCcccCCee
Confidence 34578999999997654 355667899999999977654
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=36.34 E-value=11 Score=32.45 Aligned_cols=45 Identities=24% Similarity=0.457 Sum_probs=28.6
Q ss_pred cccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc----CCCCCCCCC
Q 008227 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI----KMECPTCRR 568 (573)
Q Consensus 522 ~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~----k~~CP~CR~ 568 (573)
.|.+|.+.-+.+. +-+.--.|...||..|+..=+.. .=.||.||.
T Consensus 63 ~C~vC~~~~~~~~--~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNAD--NMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTC--CCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCcc--ceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 6788876421111 12333468999999999765543 236999985
No 104
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=35.62 E-value=6.2 Score=26.28 Aligned_cols=13 Identities=31% Similarity=0.897 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCC
Q 008227 560 KMECPTCRRPLPP 572 (573)
Q Consensus 560 k~~CP~CR~~LPP 572 (573)
+..||+|+..+|.
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4579999887763
No 105
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.61 E-value=25 Score=28.05 Aligned_cols=42 Identities=26% Similarity=0.619 Sum_probs=28.1
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
......|+-|-+.+...+ ++..-+..||.+|+ .|-.|+.+|.
T Consensus 12 ~~~~~~C~~C~~~I~~~e-----~v~a~~~~wH~~CF--------~C~~C~~~L~ 53 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLE-----RLCVNGHFFHRSCF--------RCHTCEATLW 53 (82)
T ss_dssp CCSSCBCSSSCCBCCTTT-----BCCBTTBCCBTTTC--------BCSSSCCBCC
T ss_pred CCCCCCCcccCCCcccce-----EEEECCCeeCCCcC--------EEcCCCCCcC
Confidence 345678999999885433 13345788999884 4667766654
No 106
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.85 E-value=20 Score=31.65 Aligned_cols=36 Identities=17% Similarity=0.503 Sum_probs=27.6
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHHHH
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRW 556 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~W 556 (573)
....|.+|...|....+ .-..-.||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~R--rHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVR--RHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSC--CEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccc--cccCCCCCeEEChHHhCCc
Confidence 45789999999976542 4455679999999996654
No 107
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=34.15 E-value=21 Score=28.51 Aligned_cols=45 Identities=27% Similarity=0.640 Sum_probs=28.4
Q ss_pred CcccccccccccccccccCCCCeEEc--C--CC-CcccHhhHHHHHhc----CCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVT--P--CD-HFFHSGCLQRWMDI----KMECPTCRRPL 570 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vt--P--C~-H~FH~~CL~~Wl~~----k~~CP~CR~~L 570 (573)
..+..-| ||...-. + -|+. . |. ..||.+|+. +.. +-.||.|+..-
T Consensus 13 ~~~~~~C-~C~~~~~-g-----~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVSY-G-----EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCSC-S-----SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCCC-C-----CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3445667 8988532 1 2433 3 55 589999997 443 34699998754
No 108
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=33.92 E-value=12 Score=27.84 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=27.5
Q ss_pred cccccccccccccCCCCeEEc---CCCCcccHhhHHHHH----hcCCCCCCCC
Q 008227 522 DCVICMTAIDLMQRSNDCMVT---PCDHFFHSGCLQRWM----DIKMECPTCR 567 (573)
Q Consensus 522 ~CaICle~~e~~~~~~~~~vt---PC~H~FH~~CL~~Wl----~~k~~CP~CR 567 (573)
.|.+|..+.+.+ ..|+- .|.--||..|+.--- ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~----~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDK----VDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTT----CCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCC----CcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477888876432 23443 588899999975321 2567899996
No 109
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=33.29 E-value=27 Score=36.65 Aligned_cols=49 Identities=16% Similarity=0.377 Sum_probs=31.9
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh-----cCCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD-----IKMECPTCRRPLPP 572 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~-----~k~~CP~CR~~LPP 572 (573)
.-...|++-...+..+. +-..|.|.=|.+ ++.|+. .+-.||+|...+++
T Consensus 247 ~vSL~CPlS~~ri~~Pv-----Rg~~C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPS-----KSINCKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp EEESBCTTTSSBCSSEE-----EETTCCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred EEeecCCCccccccccC-----cCCcCCCcceEC-HHHHHHHhhcCCceeCCCCCcccCH
Confidence 34568888888877654 467799983332 234443 23579999887753
No 110
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.16 E-value=20 Score=27.93 Aligned_cols=39 Identities=23% Similarity=0.611 Sum_probs=24.9
Q ss_pred cccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
...|+-|-+.+...+ .+..-+..||.+|. .|..|+.+|.
T Consensus 9 ~~~C~~C~~~I~~~~-----~v~a~~~~~H~~CF--------~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAE-----KVSSLGKDWHKFCL--------KCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTT-----EEEETTEEEETTTC--------BCSSSCCBCC
T ss_pred CCCCcCCCCEeECCe-----EEEECCeEeeCCCC--------CCCCCCCccC
Confidence 457888888776432 23345777887773 4777776664
No 111
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.13 E-value=20 Score=30.12 Aligned_cols=47 Identities=23% Similarity=0.536 Sum_probs=28.4
Q ss_pred cccccccccccccccccCCCCeEEcC--CC-CcccHhhHHHHHhc----CCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTP--CD-HFFHSGCLQRWMDI----KMECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtP--C~-H~FH~~CL~~Wl~~----k~~CP~CR~~LP 571 (573)
.+..-| ||..... +. -+..=. |. ..||..|+. +.. +-.||.|+..-.
T Consensus 34 ~e~~yC-iC~~~~~-g~---MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCC-SC---CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCC-CC---EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 445567 9988642 11 111123 44 579999997 432 346999987653
No 112
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=33.06 E-value=5.2 Score=35.48 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=30.0
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTC 566 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~C 566 (573)
.....|..|...|....+ +-..-.||.+||.+|..........|-.|
T Consensus 17 ~~~~~C~~C~~~Fs~~~R--kHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTAR--KQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp ---CCCTTTCCCCSSGGG--CEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cccCcccCcCCccccccc--cccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 344689999999976543 44556799999999976655444455555
No 113
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=32.47 E-value=24 Score=28.68 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=28.0
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHH
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRW 556 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~W 556 (573)
.+...|.+|...|....+ .-..-.||++||.+|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~R--rHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRR--KHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBC--CEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccc--cccCCCCCCEEChHHhCCe
Confidence 445789999999976543 4445679999999997654
No 114
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=32.32 E-value=29 Score=36.31 Aligned_cols=48 Identities=13% Similarity=0.295 Sum_probs=31.4
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh---c--CCCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD---I--KMECPTCRRPLPP 572 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~---~--k~~CP~CR~~LPP 572 (573)
-...|++-...+..+. +-..|.|.=|-+ ++.|++ . +-.||+|...+++
T Consensus 214 vSL~CPlS~~ri~~P~-----Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPC-----RAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp EESBCTTTCSBCSSEE-----EETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred EeeeCCCccceeccCC-----cCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCH
Confidence 3557988888877654 467799983221 344443 2 3579999988753
No 115
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=32.22 E-value=4.3 Score=32.38 Aligned_cols=53 Identities=23% Similarity=0.338 Sum_probs=32.6
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHH----hcCCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWM----DIKMECPTCRRPLPP 572 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl----~~k~~CP~CR~~LPP 572 (573)
+.....| ||....+.+. .-+..-.|..-||..|+.--- ..+..||.|+..-.|
T Consensus 13 ~~~~~~C-~C~~~~~~g~--~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGE--RMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp CSSEECC-TTCCCSCCSS--CEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred CCcceEe-eCCCccCCCC--cEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 4456778 7988753321 112234688899999986432 234679999765433
No 116
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=31.67 E-value=38 Score=28.08 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=29.0
Q ss_pred CcccccccccccccccccCCCCeEEcC--CCCcccHhhHHHHHhc
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTP--CDHFFHSGCLQRWMDI 559 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtP--C~H~FH~~CL~~Wl~~ 559 (573)
......|.+|.+.+|... ...-| =.|.||..|-+.-++.
T Consensus 12 ~~a~l~CtlC~erLEdtH----FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTH----FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTT----SEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCc----eeeCCCccCCeeeccccHHHHHh
Confidence 356689999999998653 33333 2599999999998873
No 117
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=31.38 E-value=7.1 Score=29.89 Aligned_cols=45 Identities=24% Similarity=0.614 Sum_probs=30.1
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc----CCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI----KMECPTCRR 568 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~----k~~CP~CR~ 568 (573)
..+..|.+|... + +-+..-.|...||..|+..=+.. .-.||.|+.
T Consensus 3 ~~~~~C~vC~~~---g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 3 IHEDFCSVCRKS---G---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCCSSCTTTCCC---S---SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCCcCCCCC---C---cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 346789999874 1 13334468899999999864432 235888854
No 118
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=31.02 E-value=10 Score=39.61 Aligned_cols=51 Identities=20% Similarity=0.404 Sum_probs=0.0
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc-------CCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI-------KMECPTCRRPL 570 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~-------k~~CP~CR~~L 570 (573)
.....|.+|...|....+ +...-.||++||..|-...... ...|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r--~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLR--RHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ------------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcch--hhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 446789999999976543 3445679999999999876531 24577775543
No 119
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=30.46 E-value=68 Score=27.04 Aligned_cols=52 Identities=19% Similarity=0.358 Sum_probs=36.7
Q ss_pred ccccccccccccccccCCCC-eEEcCCCCcccHhhHHHHHh-cCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSND-CMVTPCDHFFHSGCLQRWMD-IKMECPTCRRPL 570 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~-~~vtPC~H~FH~~CL~~Wl~-~k~~CP~CR~~L 570 (573)
....|.||-+++....+.+. +..--|+--.|+.|.+-=.+ -++.||-|+.+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 45799999999866543221 12335777889999886443 468899998865
No 120
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=30.46 E-value=21 Score=27.49 Aligned_cols=52 Identities=19% Similarity=0.392 Sum_probs=33.1
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh-------cCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD-------IKMECPTCRRP 569 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~-------~k~~CP~CR~~ 569 (573)
...+..|.+|........ .+-+..-.|+-.||..|+..=+. ..-.||.|+..
T Consensus 3 ~~~~~~C~vC~~~~~~~~-~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAP-NEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTT-BCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCC-CCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 455688999998643221 12223346889999999885332 22469988654
No 121
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=30.32 E-value=11 Score=30.39 Aligned_cols=46 Identities=24% Similarity=0.569 Sum_probs=30.3
Q ss_pred cccccccccccccccccCCCCeEEc----CCCCcccHhhHHHHH---------hcCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVT----PCDHFFHSGCLQRWM---------DIKMECPTCRRP 569 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vt----PC~H~FH~~CL~~Wl---------~~k~~CP~CR~~ 569 (573)
+....| ||....+. ..|+- .|..-||..|+.-=- ..+-.||.|+..
T Consensus 14 ~~~~~C-iC~~~~~~-----g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLET-----DSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCCC-----SCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCCC-----CCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 456778 79887322 23443 699999999985321 135679999754
No 122
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.92 E-value=26 Score=28.54 Aligned_cols=37 Identities=16% Similarity=0.401 Sum_probs=27.6
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHH
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRW 556 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~W 556 (573)
.+...|.+|...|..-.+ +-..-.||++||.+|...-
T Consensus 12 ~~~~~C~~C~~~F~~~~R--rHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKK--RRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCSSCSSSCCCCCSSSC--CEECSSSCCEECTTTSCEE
T ss_pred CCCCcCcCcCCccccchh--hhhhcCCCcEEChhhcCCc
Confidence 445789999999976543 3445669999999996543
No 123
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.86 E-value=41 Score=25.64 Aligned_cols=40 Identities=20% Similarity=0.511 Sum_probs=22.6
Q ss_pred cccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
...|+-|-+.+...+ ..+..-+..||.+|. .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~----~~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPGS----RKLEYGGQTWHEHCF--------LCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSSS----CEECSTTCCEETTTC--------BCTTTCCBTT
T ss_pred CCCCccCCCccccCc----cEEEECccccCcccC--------eECCCCCcCC
Confidence 356777777765321 133445667777663 4666666553
No 124
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=29.46 E-value=8.9 Score=30.40 Aligned_cols=46 Identities=22% Similarity=0.525 Sum_probs=30.2
Q ss_pred CcccccccccccccccccCCCCeEE--cCCCCcccHhhHHHHHh---cCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMV--TPCDHFFHSGCLQRWMD---IKMECPTCRR 568 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~v--tPC~H~FH~~CL~~Wl~---~k~~CP~CR~ 568 (573)
..+...| ||..+.+. ..|+ -.|+.-||..|+.---. .+-.||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~~-----~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAG-----RPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTT-----CCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCC-----CCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3456778 99886541 2333 35889999999864321 2457999975
No 125
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=29.26 E-value=22 Score=34.35 Aligned_cols=36 Identities=19% Similarity=0.589 Sum_probs=28.0
Q ss_pred cccccccccccccccCCCCeEEcCCCCcccHhhHHHHH
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWM 557 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl 557 (573)
+..|.+|...|..-.+ +...-.||++||..|-....
T Consensus 164 ~~~C~~C~~~F~~~~R--rhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTR--KHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CSBCTTTCCBCBTTBC--CEECTTTCCEECTTTCCEEE
T ss_pred CCCCcCcCCCCCcccc--ccccCCCcCEeChhhcCCcc
Confidence 4689999999986543 45567799999999976543
No 126
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=29.24 E-value=38 Score=26.96 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=31.9
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHh--cCCCCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMD--IKMECPTCRR 568 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~--~k~~CP~CR~ 568 (573)
....+..|.||.+.-.... .+-+..-.|.-.||..|+..=.. ..=.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~-~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNS-NVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSS-SCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCC-CCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4566789999987631111 11222346889999999974321 1235888854
No 127
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=28.96 E-value=12 Score=30.43 Aligned_cols=45 Identities=31% Similarity=0.622 Sum_probs=26.6
Q ss_pred cccccccccccccCCCCeEEcCCCCcccHhhHHHHHhc----C-CCCCCCCCC
Q 008227 522 DCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDI----K-MECPTCRRP 569 (573)
Q Consensus 522 ~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~----k-~~CP~CR~~ 569 (573)
.|.+|...-+.++ -+.--.|...||..|+..=+.. . =.||.|+.+
T Consensus 28 ~C~vC~~~~d~~~---ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDPDK---QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCGGG---EEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCCcc---eeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 4666665432211 2223358899999999865543 1 369999863
No 128
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=28.41 E-value=20 Score=30.83 Aligned_cols=11 Identities=36% Similarity=1.078 Sum_probs=10.4
Q ss_pred ccHhhHHHHHh
Q 008227 548 FHSGCLQRWMD 558 (573)
Q Consensus 548 FH~~CL~~Wl~ 558 (573)
||+.||.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 129
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=28.20 E-value=20 Score=30.74 Aligned_cols=11 Identities=36% Similarity=1.147 Sum_probs=10.4
Q ss_pred ccHhhHHHHHh
Q 008227 548 FHSGCLQRWMD 558 (573)
Q Consensus 548 FH~~CL~~Wl~ 558 (573)
||+.||.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 130
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=26.06 E-value=32 Score=28.51 Aligned_cols=38 Identities=21% Similarity=0.480 Sum_probs=27.7
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHH
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRW 556 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~W 556 (573)
......|.+|...|..-.+ .-..-.||++||.+|....
T Consensus 6 ~~~~~~C~~C~~~F~~~~R--rHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKK--EYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSC--EEECSSSCCEEETTTSCEE
T ss_pred CCcCCCCcCcCCcccCccc--cccCCCCCCEEChhHcCCc
Confidence 3455689999999976542 3345569999999997653
No 131
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=26.02 E-value=37 Score=26.90 Aligned_cols=34 Identities=21% Similarity=0.468 Sum_probs=26.0
Q ss_pred ccccccccccccccCCCCeEEcCCCCcccHhhHHHH
Q 008227 521 TDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRW 556 (573)
Q Consensus 521 ~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~W 556 (573)
..|.+|...|..-.+ +-..-.||++|+.+|....
T Consensus 12 ~~C~~C~~~F~~~~R--rHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNR--KHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBC--CEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccc--cccCCCCCEEEcccccCCe
Confidence 479999999976543 4445679999999997543
No 132
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=25.75 E-value=16 Score=31.70 Aligned_cols=26 Identities=23% Similarity=0.677 Sum_probs=17.0
Q ss_pred eEEcCCCCcccHhhHHHHHhcCCCCCCCCCC
Q 008227 539 CMVTPCDHFFHSGCLQRWMDIKMECPTCRRP 569 (573)
Q Consensus 539 ~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~ 569 (573)
+..-.||+.|. .=+.....||.|++.
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCC
Confidence 34566999991 112334689999875
No 133
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.68 E-value=27 Score=33.49 Aligned_cols=35 Identities=17% Similarity=0.432 Sum_probs=26.9
Q ss_pred cccccccccccccccCCCCeEEcCCCCcccHhhHHHH
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRW 556 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~W 556 (573)
+..|.+|...|....+ .-..-.||++||.+|....
T Consensus 161 ~~~C~~C~~~F~~~~r--rhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNR--KHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSC--CEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCccc--ccccCCcCCEEChHHhCCe
Confidence 4699999999976543 4455679999999997654
No 134
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=25.66 E-value=7.1 Score=30.79 Aligned_cols=45 Identities=24% Similarity=0.493 Sum_probs=27.0
Q ss_pred cccccccccccccccccCCCCeEEc----CCCCcccHhhHHHHH--------hcCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVT----PCDHFFHSGCLQRWM--------DIKMECPTCRR 568 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vt----PC~H~FH~~CL~~Wl--------~~k~~CP~CR~ 568 (573)
+....| ||....+. ..|+. .|+.-||..|+.--- ..+-.||.||.
T Consensus 8 e~~v~C-~C~~~~~~-----g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 8 EAKVRC-ICSSTMVN-----DSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SCEECC-TTCCCSCC-----SCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCEEe-ECCCCcCC-----CCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 344667 79765432 23443 388899999973110 01356999974
No 135
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=25.46 E-value=32 Score=26.74 Aligned_cols=44 Identities=7% Similarity=0.024 Sum_probs=23.9
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccH-hhHHHHHhcCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHS-GCLQRWMDIKMECPTCRRP 569 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~-~CL~~Wl~~k~~CP~CR~~ 569 (573)
+-..|..|...+... .+. ..=+..||. .|-.+- ....|-.|...
T Consensus 26 ~CF~C~~C~~~L~~~----~~~-~~~g~~yC~~~cy~~~--f~~~C~~C~~~ 70 (76)
T 1iml_A 26 PCLKCEKCGKTLTSG----GHA-EHEGKPYCNHPCYSAM--FGPKGFGRGGA 70 (76)
T ss_dssp TTCBCTTTCCBCCTT----TEE-EETTEEEETTTHHHHH--SSCCCSSCCCS
T ss_pred CCCCccccCccCCCC----ceE-CcCCeEeeCHHHHHHH--hCccCCCcCCc
Confidence 346777777776542 121 123456776 476553 33457777544
No 136
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=24.15 E-value=1.2e+02 Score=24.96 Aligned_cols=47 Identities=17% Similarity=0.403 Sum_probs=34.3
Q ss_pred CCcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCC
Q 008227 516 GTYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPT 565 (573)
Q Consensus 516 ~~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~ 565 (573)
+......|.+|.+.......-..++..=|+=..|.+|.++. ..+|+.
T Consensus 34 Nl~~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~---~~eC~l 80 (84)
T 1r79_A 34 NLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL---LTKCSG 80 (84)
T ss_dssp CCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC---CSCBCC
T ss_pred CCCCCCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc---cCcCCC
Confidence 33446799999998765443346677779999999998885 556763
No 137
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=24.05 E-value=49 Score=24.81 Aligned_cols=38 Identities=21% Similarity=0.526 Sum_probs=24.7
Q ss_pred cccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
...|+-|-+.+. + . .+..-+..||.+|. .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~-~----~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIE-G----R-VVNAMGKQWHVEHF--------VCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECC-S----C-EECCTTSBEETTTC--------BCTTTCCBCS
T ss_pred CCCCcccCCEec-c----e-EEEECccccccCcC--------EECCCCCCCC
Confidence 457888888775 2 1 24456777888773 4777776653
No 138
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.92 E-value=46 Score=25.35 Aligned_cols=39 Identities=21% Similarity=0.488 Sum_probs=21.2
Q ss_pred ccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 521 TDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 521 ~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
..|+-|-+.+...+ ..+..-+..||.+|. .|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~----~~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGT----RKMEYKGSSWHETCF--------ICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSS----CEEEETTEEEETTTT--------CCSSSCCCCC
T ss_pred CCCccCCCcccCCc----eEEEECcCeecccCC--------cccccCCccC
Confidence 46777777665321 123334566776663 3666666553
No 139
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.43 E-value=66 Score=25.81 Aligned_cols=41 Identities=24% Similarity=0.471 Sum_probs=29.9
Q ss_pred CcccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 517 TYHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 517 ~~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
......|+-|-+.+.. .+ +..-+..||.+|. .|-.|+.+|.
T Consensus 22 ~~~~~~C~~C~~~I~~-----~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 62 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVG-----AV-VKARDKYRHPECF--------VCADCNLNLK 62 (89)
T ss_dssp CCSCCBCTTTCCBCCS-----CC-EESSSCEECTTTC--------CCSSSCCCTT
T ss_pred CCcCCCcccCCCEecc-----cE-EEECCceECccCC--------EecCCCCCCC
Confidence 3456789999998863 12 4457889999884 5888888774
No 140
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.39 E-value=48 Score=25.15 Aligned_cols=26 Identities=31% Similarity=0.603 Sum_probs=12.2
Q ss_pred ccccccccccccccCCCCeEEcCCCCcccHhh
Q 008227 521 TDCVICMTAIDLMQRSNDCMVTPCDHFFHSGC 552 (573)
Q Consensus 521 ~~CaICle~~e~~~~~~~~~vtPC~H~FH~~C 552 (573)
..|+-|-+.+.. +. +..-+..||.+|
T Consensus 6 ~~C~~C~~~I~~-----~~-~~a~~~~~H~~C 31 (70)
T 2d8z_A 6 SGCVQCKKPITT-----GG-VTYREQPWHKEC 31 (70)
T ss_dssp CBCSSSCCBCCS-----SE-EESSSSEEETTT
T ss_pred CCCcccCCeecc-----ce-EEECccccCCCC
Confidence 345555555531 11 233455555555
No 141
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=23.31 E-value=29 Score=26.28 Aligned_cols=41 Identities=20% Similarity=0.610 Sum_probs=28.5
Q ss_pred ccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 519 HTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 519 ~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
....|+-|-+.+...+ ..+..=+..||.+|. .|-.|..+|.
T Consensus 10 ~~~~C~~C~~~i~~~e----~~~~~~~~~~H~~CF--------~C~~C~~~L~ 50 (72)
T 3f6q_B 10 ASATCERCKGGFAPAE----KIVNSNGELYHEQCF--------VCAQCFQQFP 50 (72)
T ss_dssp TTCBCTTTCCBCCTTC----EEEEETTEEEETTTS--------SCTTTCCCCG
T ss_pred CCccchhcCccccCCc----eEEEeCcCeeCcCCC--------cccCCCCCCC
Confidence 3568999999886443 223346778998885 5778887764
No 142
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.99 E-value=22 Score=32.40 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=20.2
Q ss_pred CCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 537 NDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 537 ~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
-.+....|+|.|-.. .....||.|..++
T Consensus 131 ~~y~C~~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 131 WRYVCIGCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp CCEEESSSCCEESSC------CGGGBCTTTCCBE
T ss_pred EEEECCCCCCcccCC------CCCCcCCCCCCcc
Confidence 467888899999743 2234799998754
No 143
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.38 E-value=55 Score=25.67 Aligned_cols=39 Identities=28% Similarity=0.418 Sum_probs=27.4
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
.....|+-|-+.+.. . .+..-+..||.+|+ .|-.|+.+|
T Consensus 13 ~~~~~C~~C~~~I~~-----~-~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG-----V-FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCCCSSSCCCCCS-----S-CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCCCccccCCCCccC-----c-EEEECcceeCcCcC--------eeCCCCCCC
Confidence 445789999998763 1 24456788998884 477777665
No 144
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=22.16 E-value=31 Score=27.93 Aligned_cols=43 Identities=16% Similarity=0.357 Sum_probs=27.1
Q ss_pred cccccc--cccccccccCCCCeEEc-----CCCCcccHhhHHHHHhcCCCCC
Q 008227 520 TTDCVI--CMTAIDLMQRSNDCMVT-----PCDHFFHSGCLQRWMDIKMECP 564 (573)
Q Consensus 520 ~~~CaI--Cle~~e~~~~~~~~~vt-----PC~H~FH~~CL~~Wl~~k~~CP 564 (573)
..-|+- |-..+....+...+... .|+|.||..|.+.|=. ..|.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCSS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Cccc
Confidence 556776 76666443322233333 5999999999999844 4554
No 145
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.02 E-value=41 Score=26.04 Aligned_cols=42 Identities=19% Similarity=0.622 Sum_probs=27.0
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
.....|+-|-+.+...+ . .+..-+..||.+|. .|-.|+.+|.
T Consensus 9 ~~~~~C~~C~~~I~~~~---~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 50 (77)
T 1g47_A 9 LASATCERCKGGFAPAE---K-IVNSNGELYHEQCF--------VCAQCFQQFP 50 (77)
T ss_dssp CCCCBCSSSCCBCCSTT---T-CEEETTEEECTTTC--------CCTTTCCCCG
T ss_pred CCCCCchhcCCccCCCc---e-EEEeCccEeccccC--------eECCCCCCCC
Confidence 34578888888875432 1 23345778888773 4777777664
No 146
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.01 E-value=56 Score=26.37 Aligned_cols=28 Identities=25% Similarity=0.592 Sum_probs=16.0
Q ss_pred cccccccccccccccCCCCeEEcCCCCcccHhh
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGC 552 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~C 552 (573)
...|+-|-+.+...+ .+..-+..||.+|
T Consensus 15 ~~~C~~C~~~I~~~~-----~v~a~~~~~H~~C 42 (91)
T 2d8y_A 15 RETCVECQKTVYPME-----RLLANQQVFHISC 42 (91)
T ss_dssp SCBCTTTCCBCCTTS-----EEECSSSEEETTT
T ss_pred CCcCccCCCccCCce-----eEEECCCEECCCC
Confidence 456777777665322 2344566666666
No 147
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.85 E-value=56 Score=24.90 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=6.7
Q ss_pred CCcccHhhHHHHH
Q 008227 545 DHFFHSGCLQRWM 557 (573)
Q Consensus 545 ~H~FH~~CL~~Wl 557 (573)
+..||..|-.+-+
T Consensus 53 ~~~yC~~cy~~~~ 65 (72)
T 1x61_A 53 RRAYCEGCYVATL 65 (72)
T ss_dssp SCEEEHHHHHHHH
T ss_pred CeEECHHHHHHHH
Confidence 4455555555444
No 148
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.64 E-value=74 Score=24.87 Aligned_cols=40 Identities=23% Similarity=0.559 Sum_probs=27.7
Q ss_pred cccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 520 TTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 520 ~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
...|+-|-+.+...+ . .+..-+..||.+|. .|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~---~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGD---Q-NVEYKGTVWHKDCF--------TCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSS---C-EEECSSCEEETTTC--------CCSSSCCCCT
T ss_pred CCcCccCCcccccCc---e-EEEECccccccccC--------chhhCCCccC
Confidence 368999998886433 2 24445788998884 5778887764
No 149
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.41 E-value=46 Score=26.47 Aligned_cols=41 Identities=27% Similarity=0.558 Sum_probs=27.7
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
.....|+-|-+.+...+ . +..-+..||.+|+ .|-.|+.+|.
T Consensus 13 ~~~~~C~~C~~~I~~~~---~--v~a~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQ---S--LLALDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSC---C--EEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCe---E--EEECCcccccccC--------CcCcCCCCcC
Confidence 34578999999886432 2 3335788998883 5778877663
No 150
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.12 E-value=44 Score=26.95 Aligned_cols=40 Identities=18% Similarity=0.450 Sum_probs=28.1
Q ss_pred cccccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCCC
Q 008227 518 YHTTDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLP 571 (573)
Q Consensus 518 ~~~~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~LP 571 (573)
.....|+-|-+.+.. . .+..-+..||.+|+ .|-.|+.+|.
T Consensus 23 ~~~~~C~~C~~~I~~-----~-~v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 23 KRTPMCAHCNQVIRG-----P-FLVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp TCCCBBSSSCCBCCS-----C-EEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCCccCCCEecc-----e-EEEECCccccccCC--------ccCCCCCCCC
Confidence 456789999998842 2 23456888998884 5778877764
No 151
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.02 E-value=39 Score=25.76 Aligned_cols=36 Identities=22% Similarity=0.572 Sum_probs=19.0
Q ss_pred ccccccccccccccCCCCeEEcCCCCcccHhhHHHHHhcCCCCCCCCCCC
Q 008227 521 TDCVICMTAIDLMQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPL 570 (573)
Q Consensus 521 ~~CaICle~~e~~~~~~~~~vtPC~H~FH~~CL~~Wl~~k~~CP~CR~~L 570 (573)
..|+-|-+.+.. .+ +..-+..||.+|+ .|-.|+.+|
T Consensus 6 ~~C~~C~~~I~~-----~~-~~a~~~~~H~~CF--------~C~~C~~~L 41 (70)
T 2d8x_A 6 SGCHQCGEFIIG-----RV-IKAMNNSWHPECF--------RCDLCQEVL 41 (70)
T ss_dssp SBCSSSCCBCCS-----CC-EEETTEEECTTTS--------BCSSSCCBC
T ss_pred CcCccCCCEecc-----eE-EEECcccccccCC--------EeCCCCCcC
Confidence 456666666541 11 2334556666663 355665554
Done!