Query 008228
Match_columns 573
No_of_seqs 157 out of 194
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 21:07:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1183 N-acetylglucosaminyltr 100.0 5E-102 1E-106 823.3 36.1 506 13-558 110-623 (623)
2 PF05024 Gpi1: N-acetylglucosa 100.0 1.3E-61 2.9E-66 466.4 22.0 188 204-393 2-189 (189)
3 KOG1183 N-acetylglucosaminyltr 94.6 5.1 0.00011 45.7 20.7 74 157-231 222-303 (623)
4 COG1839 Uncharacterized conser 30.9 25 0.00053 34.3 1.2 48 24-72 108-158 (162)
5 KOG2848 1-acyl-sn-glycerol-3-p 23.0 95 0.0021 33.0 3.8 74 377-455 6-87 (276)
6 PRK15476 oxaloacetate decarbox 20.7 7.1E+02 0.015 28.1 9.9 55 308-363 320-376 (433)
7 PRK15477 oxaloacetate decarbox 20.6 7.1E+02 0.015 28.1 9.9 55 308-363 320-376 (433)
8 PRK15475 oxaloacetate decarbox 19.2 8E+02 0.017 27.7 9.9 55 308-363 320-376 (433)
9 PF08058 NPCC: Nuclear pore co 18.5 2E+02 0.0044 27.5 4.7 15 343-357 91-105 (144)
10 PF10292 7TM_GPCR_Srab: Serpen 18.4 8.1E+02 0.017 25.7 9.6 64 369-432 221-286 (324)
No 1
>KOG1183 consensus N-acetylglucosaminyltransferase complex, subunit PIG-Q/GPI1, required for phosphatidylinositol biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-102 Score=823.32 Aligned_cols=506 Identities=38% Similarity=0.599 Sum_probs=454.3
Q ss_pred HhhhheeeccccccccCCcceEEEEeeCCCCCccccccCCCCCcchhcCCCCCchhHHHhhhcCCCCchHHHHHHhhhHH
Q 008228 13 VFLNCITFTGTGDWCLNAMSTYVILYETPRYGACHFSLSFWNSSKKAKIPLKEPKWIDELHQKQPLNDLDAVILAMNSAT 92 (573)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~vi~y~~P~~~~~~~sl~~~~~~~~~~~~~~k~~~v~~l~~~~~~~~l~~ii~~iN~~~ 92 (573)
..+|||+|+|+|....|+|+..++.+|+|..|.||+|+.+.++..+.+++.||+||+.+.++.+ ++..-.||++
T Consensus 110 i~l~~i~yhp~~p~~ln~msle~~~r~~l~~~~h~~sl~~~ns~pat~a~lkklk~vfdt~~rn------~vgl~ln~~a 183 (623)
T KOG1183|consen 110 IVLDCIIYHPMGPLYLNAMSLEVIVRDTLVFGSHHFSLSFSNSSPATKAPLKKLKWVFDTHNRN------TVGLSLNCAA 183 (623)
T ss_pred eehhheeccCCCccceeeeeeehhHhhhhcccccccccChhhcChhhhhhhcCceeeccchhhh------hHHHHHhhhH
Confidence 4689999999999999999999999999999999999999999999999999999999999766 8888999999
Q ss_pred HHHHHHhhhc-cCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhhhhhHhhhhHHH
Q 008228 93 ASKMVFERHV-GSSRSFTKFSIICRLIALVWQLLAVSMASLSTIFYIFLQFLHSLLSFGSQSWIYTASKRLFNTTWINIQ 171 (573)
Q Consensus 93 ~~~~~~~k~~-~~krs~s~~t~~~~~~~~~~~~~~~~i~~v~~~~~ii~~~~~~~l~~~~~~~~~~~l~~i~~~t~qQid 171 (573)
+.+-++.++- ..|.+.-.+++.+.+.+.+|.+++.+...++... ++...++++|.+|.|.++..+- ..|++|
T Consensus 184 a~~vr~~~~~~~~k~~sylf~l~~riSslt~~llasll~~ls~ls-----~f~l~i~lrp~s~~y~~~~~v~--~~r~~~ 256 (623)
T KOG1183|consen 184 AAKVRYKKISTQLKTSSYLFSLSYRISSLTWRLLASLLGSLSSLS-----FFYLLISLRPFSWVYIASRRVL--KNRWMD 256 (623)
T ss_pred HhhhHHHHHhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHHHHhhchhHHHhHHhHHHH--HHHHHH
Confidence 9999888854 4566667799999999999999999999988776 4555667889999999997775 568999
Q ss_pred HHhhcccchhhhcccc-cccccc-ch--hHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHH
Q 008228 172 IRCGQILFWPILLQDN-DLRSQS-CV--EYAEKAALHKHSMWSSLAVDLLLGNLIGFSLLFNAESVCLWVLDFANDPTNE 247 (573)
Q Consensus 172 lR~qQ~~ywPiq~~~~-~lrs~~-~~--~y~~~~~~~~nslWlsI~nDviLGi~lg~~L~~n~~~i~~~l~~~l~~~~~~ 247 (573)
.|++|.+.||.+.... -.|+.+ ++ .|.++ -.+||.+|+ ++||.++|.++|.++.+|.+.+++..++++.+++++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~r~s~~~~~~~~~~a-l~l~~~~wl-i~~d~~~G~~~~~~ll~n~~~v~sl~~~~~kef~~~ 334 (623)
T KOG1183|consen 257 KRLKQVVLIRVLEAKILLVRKSSFVASLLLDVA-LQLYNTLWL-IANDNVFGWTVGAFLLENGHVVVSLNHDFAKEFTNG 334 (623)
T ss_pred HHHhHhhhhhhhhhHHHHHHHhhhhHHHHHHHH-HHHHHHHHH-HhccHHHHHHhhhhhhccchhHHHhhhHHHHHHhhh
Confidence 9999999999997643 244432 32 33333 237999999 999999999999999999999999999999999999
Q ss_pred HHHhhchhhccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 008228 248 LLRTGCVWLMGVPAGFKLNTELAGVLGMISLNAIQIWSTLWFFVDS---LLASLVKGLAILGILFGMTVPAALVRDMIVV 324 (573)
Q Consensus 248 ~L~~~i~WLmg~PaGLKLN~eLa~fLg~lfL~~I~~W~~~~~~~~~---~l~~li~~l~~~g~l~G~S~~lAl~~Dli~l 324 (573)
.++++++||||+|||+|||+||++|||++|+|+|++|.+.+.+.-+ .+.+..+.++.++ ++|+|++.|+++|++++
T Consensus 335 ~lrs~~~WL~~~PAGlKLN~el~~~L~~~fl~vI~~Wst~~l~~~~~~~fl~~~~~~i~ls~-~~G~S~~~alv~Df~ai 413 (623)
T KOG1183|consen 335 ILRSTITWLMGNPAGLKLNTELAEVLGWFFLYVIYLWSTSMLFCLSKFPFLFHNFRFIALSL-IGGASVASALVIDFIAI 413 (623)
T ss_pred hHHHHHHhhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988887754 3444445666655 69999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccCCcccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 008228 325 VMLHVSTLHWMISLLYSQQIQALAALWRLFRGRKWNPLRQRLDSYEYTVKQHIVGSLLFTPLLLLLPTTSVFYIFFTMMN 404 (573)
Q Consensus 325 ~TlHI~~fY~~sa~lY~~ql~~l~SL~~LFRGKK~NvLR~RiDs~~ydlDQLllGTLLFTiL~FLlPTv~vfYl~Fa~lr 404 (573)
+|+||||||.+++|+|++|++++.|||||||||||||||||+||+.||+||+++||+|||+|+||+|||+|||++|+++|
T Consensus 414 ~tlHI~~fy~~stkLY~~qi~~lasLw~LFRGKK~NvLRqRiDs~~ydldQl~lGTlLFtiLlFlLPTi~vfY~~FtllR 493 (623)
T KOG1183|consen 414 LTLHIYCFYAASTKLYYLQIYTLASLWRLFRGKKWNVLRQRIDSYIYDLDQLFLGTLLFTILLFLLPTIFVFYVVFTLLR 493 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCcCCceEEEEEeecCCCCCCCCcccccccCCCCcccccccccccchh
Q 008228 405 TSISLICMLIEVIISIIHATPYIKIVLWLVRRRRFPAGIWFEIVSCHSNSVNSPEIVSLDKISSPSKNSLHQENISGRSH 484 (573)
Q Consensus 405 l~Ii~v~~lle~~i~~ln~fPlf~L~Lrlkdp~RlPgGI~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (573)
+.+..+++++|..++++||||+|++|+|+|||+|+|+|++||.+.+..+..++ .+..++| .+.+.|+.+|-
T Consensus 494 ~~v~ai~~l~e~~ia~inhfPLfalmlrL~~pyR~P~Gv~fE~~~~~~~k~~~-----l~~q~nP----~k~ssMv~~yr 564 (623)
T KOG1183|consen 494 LLVSAIQTLIEFFIALINHFPLFALMLRLKRPYRLPAGVQFEALAEEKTKSQN-----LDAQENP----EKNSSMVSNYR 564 (623)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHhccccCCCccchhhhhcccccccc-----hhhhhCC----chhhhHHHHHH
Confidence 99999999999999999999999999999999999999999998766555543 3344666 77889999999
Q ss_pred HHHHHHhhcccccchhhchhhhhhhhhhhhhHHhhhhcceeccccccccccCCCCCCCccccchhHHHHhhhhh
Q 008228 485 VLVSILHSNFLTIGQIVIPHYRQVFTRVSRSYFARSAYGVLTGKRISSTLGTKLPSTMPWMLIPYKEYWCLCRN 558 (573)
Q Consensus 485 ~lvs~l~~ny~s~~~v~~p~~r~~f~~~~~~~~~~~a~g~~~g~r~~~~l~~~lp~~~~~~~~~~~~~~~~~~~ 558 (573)
.+-++|++||+|+.++ +.. ..|.|+..|.|+|...|..+|-|.||.++|-+++|++|++
T Consensus 565 ll~~~l~t~y~s~st~-----~~~----------~~gc~v~~~~~~~ly~~ly~~lp~pwls~~dlqd~l~~q~ 623 (623)
T KOG1183|consen 565 LLFLTLKTIYSSISTS-----SLT----------TSGCGVLSGKRMPLYLGLYLPLPRPWLSMPDLQDWLLCQN 623 (623)
T ss_pred HHHHHHHHHhhhhhhh-----hhh----------hcCCCCCccchhhhHHhhccCCCCCcccchhHHHhhhccC
Confidence 9999999999999988 332 4589999999999999999999999999999999999985
No 2
>PF05024 Gpi1: N-acetylglucosaminyl transferase component (Gpi1); InterPro: IPR007720 Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This chemically simple step is genetically complex because three or four genes are required in both Saccharomyces cerevisiae (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively [].; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity, 0006506 GPI anchor biosynthetic process, 0016021 integral to membrane
Probab=100.00 E-value=1.3e-61 Score=466.38 Aligned_cols=188 Identities=42% Similarity=0.669 Sum_probs=183.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhhchhhccCCcccccCHHHHHHHHHHHHHHHHH
Q 008228 204 HKHSMWSSLAVDLLLGNLIGFSLLFNAESVCLWVLDFANDPTNELLRTGCVWLMGVPAGFKLNTELAGVLGMISLNAIQI 283 (573)
Q Consensus 204 ~~nslWlsI~nDviLGi~lg~~L~~n~~~i~~~l~~~l~~~~~~~L~~~i~WLmg~PaGLKLN~eLa~fLg~lfL~~I~~ 283 (573)
+||++|+ ++||+++|+++|.++.+|.+.++..+.+..+.++.+.+++.++||||||||+|||+|||+|+|++++|++++
T Consensus 2 ~~N~iwl-i~nDi~lG~~l~~~L~~~~~~i~~~~~~~~~~~~~~~l~~~i~WL~~~PaGlKLN~eL~~fLg~~fl~~i~~ 80 (189)
T PF05024_consen 2 LYNTIWL-IANDILLGVLLGLLLSENRESIASFLHRLLEFYLVDSLKSLIEWLMGNPAGLKLNTELASFLGSLFLWHIQL 80 (189)
T ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeeCHHHHHHHHHHHHHHHHH
Confidence 6899999 999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q 008228 284 WSTLWFFVDSLLASLVKGLAILGILFGMTVPAALVRDMIVVVMLHVSTLHWMISLLYSQQIQALAALWRLFRGRKWNPLR 363 (573)
Q Consensus 284 W~~~~~~~~~~l~~li~~l~~~g~l~G~S~~lAl~~Dli~l~TlHI~~fY~~sa~lY~~ql~~l~SL~~LFRGKK~NvLR 363 (573)
|+++..++.|..+.+++.++.+| ++|+|+++|+++|+++++|+|+|++|++++|+|++|+++++|||||||||||||||
T Consensus 81 W~~~~~~i~~~~~~~~~~i~~~~-~~G~S~~lal~~D~~~l~T~Hi~~~y~~~~~ly~~ql~~l~sL~~LFrGkK~N~LR 159 (189)
T PF05024_consen 81 WSSYLQFISPLLPLLIWIIGISG-LLGASFFLALLSDLISLLTLHIYCFYVYSAKLYRWQLSVLKSLFRLFRGKKYNVLR 159 (189)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhh
Confidence 99999998899999999999988 79999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccchhHHHHHHHHHHHHhhhhHH
Q 008228 364 QRLDSYEYTVKQHIVGSLLFTPLLLLLPTT 393 (573)
Q Consensus 364 ~RiDs~~ydlDQLllGTLLFTiL~FLlPTv 393 (573)
||+||++||+||+++||++||+++||+|||
T Consensus 160 ~R~Ds~~~~~dqlllGtllFtil~fL~PTv 189 (189)
T PF05024_consen 160 NRVDSCEYDLDQLLLGTLLFTILLFLLPTV 189 (189)
T ss_pred ccccCCCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999996
No 3
>KOG1183 consensus N-acetylglucosaminyltransferase complex, subunit PIG-Q/GPI1, required for phosphatidylinositol biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=5.1 Score=45.68 Aligned_cols=74 Identities=22% Similarity=0.157 Sum_probs=41.9
Q ss_pred hhhhhhhHhhhhHHHHHhhcccc---hhhhccc-ccccccc-c---hhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008228 157 TASKRLFNTTWINIQIRCGQILF---WPILLQD-NDLRSQS-C---VEYAEKAALHKHSMWSSLAVDLLLGNLIGFSLLF 228 (573)
Q Consensus 157 ~~l~~i~~~t~qQidlR~qQ~~y---wPiq~~~-~~lrs~~-~---~~y~~~~~~~~nslWlsI~nDviLGi~lg~~L~~ 228 (573)
.-+..++. -.++|++|++|+|| .|++..+ .+.|.++ + .++.+.-..+.++---+.+-|+.+|.-....++.
T Consensus 222 ~~ls~ls~-f~l~i~lrp~s~~y~~~~~v~~~r~~~~~~~~~~~~~~~~~~~~~~r~s~~~~~~~~~~al~l~~~~wli~ 300 (623)
T KOG1183|consen 222 GSLSSLSF-FYLLISLRPFSWVYIASRRVLKNRWMDKRLKQVVLIRVLEAKILLVRKSSFVASLLLDVALQLYNTLWLIA 300 (623)
T ss_pred HHHHHHHH-HHHHHhhchhHHHhHHhHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 33444443 56999999999999 9988753 1223222 1 1222211122333333467888888776665555
Q ss_pred hhH
Q 008228 229 NAE 231 (573)
Q Consensus 229 n~~ 231 (573)
|..
T Consensus 301 ~d~ 303 (623)
T KOG1183|consen 301 NDN 303 (623)
T ss_pred ccH
Confidence 543
No 4
>COG1839 Uncharacterized conserved protein [Function unknown]
Probab=30.91 E-value=25 Score=34.26 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=29.6
Q ss_pred cccccCCcceEEEEeeCCCCCccccccCCCCCcch---hcCCCCCchhHHHh
Q 008228 24 GDWCLNAMSTYVILYETPRYGACHFSLSFWNSSKK---AKIPLKEPKWIDEL 72 (573)
Q Consensus 24 ~~~~~~~~~~~vi~y~~P~~~~~~~sl~~~~~~~~---~~~~~~k~~~v~~l 72 (573)
.|+|+.|-.+|||+++++. ||--...-+|.++-. .+.+.+++++..|+
T Consensus 108 ~I~~ATANP~qVIVa~te~-grgvlGVvDG~sp~gvE~d~d~~~Rr~~lr~I 158 (162)
T COG1839 108 RIYAATANPLQVIVAETEQ-GRGVLGVVDGYSPLGVETDEDIAERRELLRKI 158 (162)
T ss_pred eEEeecCCCeEEEEEEcCC-CceEEEEecCCCCcccccHHHHHHHHHHHHHh
Confidence 5889999999999999994 444333333333333 33334455555544
No 5
>KOG2848 consensus 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid transport and metabolism]
Probab=23.00 E-value=95 Score=32.96 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhHHHHHHHHhcCCCcCCceEEEEE
Q 008228 377 IVGSLLFTPLLLLL-PTTSVFYIFFTMMNTSISLICMLIEVII-------SIIHATPYIKIVLWLVRRRRFPAGIWFEIV 448 (573)
Q Consensus 377 llGTLLFTiL~FLl-PTv~vfYl~Fa~lrl~Ii~v~~lle~~i-------~~ln~fPlf~L~Lrlkdp~RlPgGI~f~~~ 448 (573)
++++++++++.+++ ++++-||+-.++. .++..+-.++-... ..-||+=........ .++-|+.+|++
T Consensus 6 ll~~~~~~ll~~~~~s~~~~yyfr~~~y-~~~~~~~~vi~~~v~~l~~~~~~~n~~~a~~~~~~~----~y~~g~r~ev~ 80 (276)
T KOG2848|consen 6 LLAVILLLLLLFLLNSKVIRYYFRCAFY-GAICSFYGVIASPVCLLRGGRSVENHFIAKLWFHSM----KYLLGLRFEVR 80 (276)
T ss_pred HHHHHHHHHHHhcCCcceeEEeeeHHHH-HHHHHHHHHHhhhheeeccCCcHHHHHHHHHHHHHH----hhhcceEEEEe
Confidence 78889999999999 5666666542222 22222222222222 234555444444443 34669999998
Q ss_pred eecCCCC
Q 008228 449 SCHSNSV 455 (573)
Q Consensus 449 ~~~~~~~ 455 (573)
+..+-..
T Consensus 81 g~E~L~~ 87 (276)
T KOG2848|consen 81 GEENLPK 87 (276)
T ss_pred chhhCCc
Confidence 7655444
No 6
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=20.70 E-value=7.1e+02 Score=28.14 Aligned_cols=55 Identities=27% Similarity=0.286 Sum_probs=28.8
Q ss_pred hhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccccc
Q 008228 308 LFGMTVPAALVRDMI-VVVMLHVSTLHWMISLLYSQQI-QALAALWRLFRGRKWNPLR 363 (573)
Q Consensus 308 l~G~S~~lAl~~Dli-~l~TlHI~~fY~~sa~lY~~ql-~~l~SL~~LFRGKK~NvLR 363 (573)
++|+|....+-+|.+ +.-|+-|..+=.++ .....-- -...-+-++|.|+|.|||=
T Consensus 320 fLGl~VGa~~~A~~FL~~~tL~Il~LGlvA-F~~~TagGvL~aKlmn~fs~~KiNPlI 376 (433)
T PRK15476 320 FLGLSVGAKLVADKFLQPQTLGILLLGVIA-FGIGTAAGVLMAKLLNLCSKNKINPLI 376 (433)
T ss_pred HHHHHhhhhccHHhhCChHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHcCCCcCccc
Confidence 456666665555532 33444443332221 1122211 2234577899999999984
No 7
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=20.65 E-value=7.1e+02 Score=28.13 Aligned_cols=55 Identities=27% Similarity=0.286 Sum_probs=28.8
Q ss_pred hhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccccc
Q 008228 308 LFGMTVPAALVRDMI-VVVMLHVSTLHWMISLLYSQQI-QALAALWRLFRGRKWNPLR 363 (573)
Q Consensus 308 l~G~S~~lAl~~Dli-~l~TlHI~~fY~~sa~lY~~ql-~~l~SL~~LFRGKK~NvLR 363 (573)
++|+|....+-+|.+ +.-|+-|..+=.++ .....-- -...-+-++|.|+|.|||=
T Consensus 320 fLGl~VGa~~~A~~FL~~~tL~Il~LGlvA-F~~~TagGvL~aKlmn~fs~~KiNPlI 376 (433)
T PRK15477 320 FLGLSVGAKLVADKFLQPQTLGILLLGVIA-FGIGTAAGVLMAKLLNLCSKNKINPLI 376 (433)
T ss_pred HHHHHhhhhccHHhhCChHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHcCCCcCccc
Confidence 456666665555532 33444443332221 1122211 2234577899999999984
No 8
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=19.16 E-value=8e+02 Score=27.74 Aligned_cols=55 Identities=27% Similarity=0.286 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccccc
Q 008228 308 LFGMTVPAALVRDMI-VVVMLHVSTLHWMISLLYSQQI-QALAALWRLFRGRKWNPLR 363 (573)
Q Consensus 308 l~G~S~~lAl~~Dli-~l~TlHI~~fY~~sa~lY~~ql-~~l~SL~~LFRGKK~NvLR 363 (573)
++|+|....+-+|.+ +.-|+-|..+=.++ .....-- -...-+-++|.|.|.|||=
T Consensus 320 fLGl~VGa~~~A~~FL~~~tl~Il~LGlvA-F~~~TagGVL~aKlmn~fs~~KiNPlI 376 (433)
T PRK15475 320 FLGLSVGAKLVADKFLQPQTLGILLLGVIA-FGIGTAAGVLMAKLLNLCSKNKINPLI 376 (433)
T ss_pred HHHHHhhhhccHHhhCChHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHcCCCcCccc
Confidence 456666666655532 33444444332221 1122211 2234567899999999984
No 9
>PF08058 NPCC: Nuclear pore complex component; InterPro: IPR012578 Proteins containing this domain are components of the nuclear pore complex []. One member of this domain is Nucleoporin POM34 (Q12445 from SWISSPROT) which is thought to have a role in anchoring peripheral Nups into the pore and mediating pore formation [].
Probab=18.52 E-value=2e+02 Score=27.45 Aligned_cols=15 Identities=40% Similarity=0.857 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhcCC
Q 008228 343 QIQALAALWRLFRGR 357 (573)
Q Consensus 343 ql~~l~SL~~LFRGK 357 (573)
-++++.|||+|||||
T Consensus 91 ~~NIv~al~~L~r~~ 105 (144)
T PF08058_consen 91 LLNIVIALWPLFRPK 105 (144)
T ss_pred HHHHHHHHHHHcCCc
Confidence 568899999999994
No 10
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=18.45 E-value=8.1e+02 Score=25.70 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=30.4
Q ss_pred CcccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhHHHHHHH
Q 008228 369 YEYTVKQHIVGSLLFTPLLLLLPTTSVFYIFFTMMNTSI--SLICMLIEVIISIIHATPYIKIVLW 432 (573)
Q Consensus 369 ~~ydlDQLllGTLLFTiL~FLlPTv~vfYl~Fa~lrl~I--i~v~~lle~~i~~ln~fPlf~L~Lr 432 (573)
.-|+++|=+--+=++.+++-+-=.+.++|.......... -.-...-..+..+.+.+|++++++=
T Consensus 221 ~RYQl~ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~y~al~e~~~~~P~Y~ii~~ 286 (324)
T PF10292_consen 221 ERYQLEENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFNPSMSKPNYFALAELNHIFPLYSIISP 286 (324)
T ss_pred hHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHHHHHHHHHHHHHHH
Confidence 348888766555444444433333444444333322211 1111122234446678999887643
Done!