Query 008228
Match_columns 573
No_of_seqs 157 out of 194
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 21:12:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nps_A Development-specific pr 17.7 32 0.0011 28.3 0.4 21 34-54 2-22 (88)
2 3hzb_A Flavollin, carbohydrate 16.1 38 0.0013 27.8 0.6 20 35-54 3-22 (90)
3 2jp3_A FXYD domain-containing 14.9 1.8E+02 0.0063 23.8 4.2 31 364-394 5-35 (67)
4 2jo1_A Phospholemman; FXYD1, N 13.9 1.7E+02 0.0057 24.3 3.8 28 366-393 6-33 (72)
5 1ha4_A Gamma crystallin S; eye 11.3 69 0.0024 26.7 0.8 19 36-54 47-65 (87)
6 2dad_A Absent in melanoma 1 pr 11.1 77 0.0026 26.9 1.0 24 31-54 38-66 (93)
7 2zxe_G FXYD10, phospholemman-l 9.9 2.4E+02 0.0083 23.5 3.6 28 364-391 7-34 (74)
8 3cw3_A Absent in melanoma 1 pr 9.8 70 0.0024 27.3 0.3 23 32-54 35-62 (96)
9 2bv2_A Ciona betagamma-crystal 9.5 73 0.0025 26.1 0.3 20 35-54 44-63 (83)
10 2kp5_A Putative uncharacterize 9.0 1.9E+02 0.0067 23.5 2.7 21 32-52 49-69 (92)
No 1
>1nps_A Development-specific protein S; crystalline like structure, signaling protein; 1.80A {Myxococcus xanthus} SCOP: b.11.1.1
Probab=17.72 E-value=32 Score=28.34 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=18.0
Q ss_pred EEEEeeCCCCCccccccCCCC
Q 008228 34 YVILYETPRYGACHFSLSFWN 54 (573)
Q Consensus 34 ~vi~y~~P~~~~~~~sl~~~~ 54 (573)
+|++||.|.+++.|+.|..|+
T Consensus 2 ~v~~Ye~~ny~G~~~~l~~Ge 22 (88)
T 1nps_A 2 NITVFYNEDFQGKQVDLPPGN 22 (88)
T ss_dssp CEEEEEETTTEEEEEEECSEE
T ss_pred eEEEEecCCCccceEEECCCC
Confidence 588999999999998888755
No 2
>3hzb_A Flavollin, carbohydrate binding protein; calcium-bound betagamma-crystallin, metal binding protein; 1.74A {Flavobacterium johnsoniae} SCOP: b.11.1.0
Probab=16.07 E-value=38 Score=27.76 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=17.2
Q ss_pred EEEeeCCCCCccccccCCCC
Q 008228 35 VILYETPRYGACHFSLSFWN 54 (573)
Q Consensus 35 vi~y~~P~~~~~~~sl~~~~ 54 (573)
|++||.|.+++.|+.|.+||
T Consensus 3 v~~Ye~~nf~G~~~~l~~g~ 22 (90)
T 3hzb_A 3 ITVYKDCNYTGFSGGLTIGD 22 (90)
T ss_dssp EEEEEETTTEEEEEEECSEE
T ss_pred EEEEcCCCCcceeEEEcCCc
Confidence 78999999999999888644
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=14.87 E-value=1.8e+02 Score=23.78 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=25.2
Q ss_pred ccccCCcccchhHHHHHHHHHHHHhhhhHHH
Q 008228 364 QRLDSYEYTVKQHIVGSLLFTPLLLLLPTTS 394 (573)
Q Consensus 364 ~RiDs~~ydlDQLllGTLLFTiL~FLlPTv~ 394 (573)
+..|.-.||-+-|=+|-|+|+.++|..--++
T Consensus 5 ~e~dpF~YDY~tLRigGLifA~vLfi~GI~i 35 (67)
T 2jp3_A 5 DKGSPFYYDWESLQLGGLIFGGLLCIAGIAL 35 (67)
T ss_dssp STTSGGGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccchHHheecchhhHHHHHHHHHHH
Confidence 3457778999999999999999988765443
No 4
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=13.86 E-value=1.7e+02 Score=24.32 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=23.6
Q ss_pred ccCCcccchhHHHHHHHHHHHHhhhhHH
Q 008228 366 LDSYEYTVKQHIVGSLLFTPLLLLLPTT 393 (573)
Q Consensus 366 iDs~~ydlDQLllGTLLFTiL~FLlPTv 393 (573)
.|.-.||-+-|=+|-|+|+.++|...-+
T Consensus 6 ~dPF~YDY~tLRiGGLifA~vLfi~GI~ 33 (72)
T 2jo1_A 6 HDPFTYDYQSLQIGGLVIAGILFILGIL 33 (72)
T ss_dssp HSGGGCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccchHHhhccchHHHHHHHHHHHH
Confidence 4777899999999999999998876543
No 5
>1ha4_A Gamma crystallin S; eye lens protein, gammas crystallin; 2.4A {Homo sapiens} SCOP: b.11.1.1 PDB: 1a7h_A
Probab=11.33 E-value=69 Score=26.71 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=17.5
Q ss_pred EEeeCCCCCccccccCCCC
Q 008228 36 ILYETPRYGACHFSLSFWN 54 (573)
Q Consensus 36 i~y~~P~~~~~~~sl~~~~ 54 (573)
++||.|.+.+.|+-|.+|+
T Consensus 47 v~YE~p~y~G~qy~le~Ge 65 (87)
T 1ha4_A 47 IFYELPNYRGRQYLLDKKE 65 (87)
T ss_dssp EEEEETTTEEEEEEECSSE
T ss_pred EEEecCCceeeEEEECCee
Confidence 7999999999999998866
No 6
>2dad_A Absent in melanoma 1 protein; crystall domain, greek KEY pattern, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=11.07 E-value=77 Score=26.88 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.6
Q ss_pred cceEE-----EEeeCCCCCccccccCCCC
Q 008228 31 MSTYV-----ILYETPRYGACHFSLSFWN 54 (573)
Q Consensus 31 ~~~~v-----i~y~~P~~~~~~~sl~~~~ 54 (573)
.|++| ++||.|.+...|+=|.+||
T Consensus 38 ~Si~V~~G~Wv~YE~pny~G~qy~Le~Ge 66 (93)
T 2dad_A 38 KSCRVSGGSWVVYDGENFTGNQYVLEEGH 66 (93)
T ss_dssp SEEEEESSEEEEESSTTSCSCEECCCSEE
T ss_pred eeEEEcCCCEEEEECCCCeeeEEEECCee
Confidence 46666 8999999999999998865
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=9.88 E-value=2.4e+02 Score=23.47 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=23.3
Q ss_pred ccccCCcccchhHHHHHHHHHHHHhhhh
Q 008228 364 QRLDSYEYTVKQHIVGSLLFTPLLLLLP 391 (573)
Q Consensus 364 ~RiDs~~ydlDQLllGTLLFTiL~FLlP 391 (573)
+-.|.-.||-+-|=+|-|+|..++|...
T Consensus 7 ~~~dpF~YDY~tLRigGLifA~vLfi~G 34 (74)
T 2zxe_G 7 DNDERFTYDYYRLRVVGLIVAAVLCVIG 34 (74)
T ss_dssp TCGGGGCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccchHHheeccchhHHHHHHHH
Confidence 4467778999999999999999888654
No 8
>3cw3_A Absent in melanoma 1 protein; beta gamma-crystallin, greek KEY, tryptophan corner;, lectin oncoprotein; 1.88A {Homo sapiens}
Probab=9.84 E-value=70 Score=27.35 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.8
Q ss_pred ceEE-----EEeeCCCCCccccccCCCC
Q 008228 32 STYV-----ILYETPRYGACHFSLSFWN 54 (573)
Q Consensus 32 ~~~v-----i~y~~P~~~~~~~sl~~~~ 54 (573)
|++| |+||.|.+.+.|+=|.+|+
T Consensus 35 Si~V~~G~Wv~YE~pny~G~qy~Le~Ge 62 (96)
T 3cw3_A 35 LIKVVRGCWILYEQPNFEGHSIPLEEGE 62 (96)
T ss_dssp EEEEEESEEEEEEETTTEEEEEEECSEE
T ss_pred EEEEcCCCEEEEEcCCceeEEEEECCcc
Confidence 5666 8999999999999898855
No 9
>2bv2_A Ciona betagamma-crystallin; calcium binding, eye lens, spherulin, chordate, ascidian; 1.55A {Ciona intestinalis}
Probab=9.54 E-value=73 Score=26.12 Aligned_cols=20 Identities=5% Similarity=0.217 Sum_probs=17.8
Q ss_pred EEEeeCCCCCccccccCCCC
Q 008228 35 VILYETPRYGACHFSLSFWN 54 (573)
Q Consensus 35 vi~y~~P~~~~~~~sl~~~~ 54 (573)
-++||.|.+...|+-|.+|+
T Consensus 44 Wv~YE~p~y~G~qy~le~Ge 63 (83)
T 2bv2_A 44 WFVFDDEGFSGPSYKLTPGK 63 (83)
T ss_dssp EEEEEETTTEEEEEEECSEE
T ss_pred EEEEecCCceEEEEEEcccc
Confidence 48999999999999998865
No 10
>2kp5_A Putative uncharacterized protein; beta-gamma crystallin, calcium-binding protein, bacterial, U function; NMR {Hahella chejuensis}
Probab=9.00 E-value=1.9e+02 Score=23.46 Aligned_cols=21 Identities=0% Similarity=0.012 Sum_probs=18.6
Q ss_pred ceEEEEeeCCCCCccccccCC
Q 008228 32 STYVILYETPRYGACHFSLSF 52 (573)
Q Consensus 32 ~~~vi~y~~P~~~~~~~sl~~ 52 (573)
..++++||.|.+++.++.+..
T Consensus 49 g~~~~~YE~~nf~G~~~~l~~ 69 (92)
T 2kp5_A 49 GLRLEVFQHNNFKGVRDFYTS 69 (92)
T ss_dssp TCEEEEESSSTTCSCCCCBCS
T ss_pred CCEEEEecCCCCcceEEEEcC
Confidence 568999999999999988876
Done!