Query 008228
Match_columns 573
No_of_seqs 157 out of 194
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 21:13:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008228.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008228hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ha4a_ b.11.1.1 (A:) gamma-Cr 12.3 43 0.0031 25.9 1.9 26 29-54 35-65 (87)
2 d1ytqa1 b.11.1.1 (A:14-103) be 10.1 50 0.0036 25.7 1.5 33 20-54 27-64 (90)
3 d1npsa_ b.11.1.1 (A:) Protein 9.1 38 0.0028 25.7 0.4 21 34-54 2-22 (88)
4 d1okia2 b.11.1.1 (A:145-236) b 8.0 68 0.0049 24.9 1.5 28 27-54 35-67 (92)
5 d1ek6a_ c.2.1.2 (A:) Uridine d 5.9 88 0.0064 27.9 1.3 20 245-264 326-345 (346)
6 d2fhfa1 b.1.18.2 (A:288-402) P 5.7 1.2E+02 0.0088 23.8 2.0 19 24-42 22-40 (115)
7 d1ytqa2 b.11.1.1 (A:104-194) b 5.6 68 0.005 24.9 0.3 26 29-54 36-66 (91)
8 d1gm5a4 c.37.1.19 (A:550-755) 5.4 1E+02 0.0074 27.2 1.4 35 14-50 93-128 (206)
9 d1vgga_ d.256.1.1 (A:) Hypothe 5.1 1.1E+02 0.0077 26.8 1.3 20 24-43 107-126 (161)
10 d1h4ax1 b.11.1.1 (X:1-85) gamm 5.0 1.1E+02 0.0082 23.0 1.3 26 29-54 31-61 (85)
No 1
>d1ha4a_ b.11.1.1 (A:) gamma-Crystallin {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.34 E-value=43 Score=25.95 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.4
Q ss_pred CCcceEEE-----EeeCCCCCccccccCCCC
Q 008228 29 NAMSTYVI-----LYETPRYGACHFSLSFWN 54 (573)
Q Consensus 29 ~~~~~~vi-----~y~~P~~~~~~~sl~~~~ 54 (573)
++.|++|. +||-|.+...|+-|.+|+
T Consensus 35 ~~~Si~V~~G~Wv~ye~~nf~G~~~~Le~Ge 65 (87)
T d1ha4a_ 35 EIHSCKVLEGVWIFYELPNYRGRQYLLDKKE 65 (87)
T ss_dssp BCCEEEEEESCEEEEEETTTEEEEEEECSSE
T ss_pred eeEEEEECccCEEEEEcCCCEEEEEEECCcc
Confidence 45688885 999999999999999876
No 2
>d1ytqa1 b.11.1.1 (A:14-103) beta-Crystallin {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.06 E-value=50 Score=25.66 Aligned_cols=33 Identities=24% Similarity=0.200 Sum_probs=24.6
Q ss_pred eccccccccCCcceEE-----EEeeCCCCCccccccCCCC
Q 008228 20 FTGTGDWCLNAMSTYV-----ILYETPRYGACHFSLSFWN 54 (573)
Q Consensus 20 ~~~~~~~~~~~~~~~v-----i~y~~P~~~~~~~sl~~~~ 54 (573)
.+.+|. .++.|++| ++||.|.+.+.|+=|.+|+
T Consensus 27 l~~~~~--~~~~Si~V~~G~Wv~ye~~nf~G~~~vLe~Ge 64 (90)
T d1ytqa1 27 LKETGV--EKAGSVLVQAGPWVGYEQANCKGEQFVFEKGE 64 (90)
T ss_dssp GGGGTC--SSCSEEEEEECCEEEEEETTTEEEEEEECSEE
T ss_pred hhhccC--CCeeEEEEcCCcEEEEccCCCEEEEEEEchhh
Confidence 344453 25667776 6999999999999898865
No 3
>d1npsa_ b.11.1.1 (A:) Protein S {Myxococcus xanthus [TaxId: 34]}
Probab=9.10 E-value=38 Score=25.75 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=18.1
Q ss_pred EEEEeeCCCCCccccccCCCC
Q 008228 34 YVILYETPRYGACHFSLSFWN 54 (573)
Q Consensus 34 ~vi~y~~P~~~~~~~sl~~~~ 54 (573)
+|++|+.|.+++..+.|.+|+
T Consensus 2 ~V~~Ye~~nf~G~s~~l~~G~ 22 (88)
T d1npsa_ 2 NITVFYNEDFQGKQVDLPPGN 22 (88)
T ss_dssp CEEEEEETTTEEEEEEECSEE
T ss_pred eEEEEecCCCeeeEEEECCCC
Confidence 689999999999999888754
No 4
>d1okia2 b.11.1.1 (A:145-236) beta-Crystallin {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.95 E-value=68 Score=24.93 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=22.7
Q ss_pred ccCCcceEE-----EEeeCCCCCccccccCCCC
Q 008228 27 CLNAMSTYV-----ILYETPRYGACHFSLSFWN 54 (573)
Q Consensus 27 ~~~~~~~~v-----i~y~~P~~~~~~~sl~~~~ 54 (573)
..++.|++| ++||-|.+...|+-|.+|+
T Consensus 35 ~~~v~Si~V~~G~Wv~ye~~nf~G~~~~Le~Ge 67 (92)
T d1okia2 35 SDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGD 67 (92)
T ss_dssp CSBCCEEEEEESEEEEEEETTTEEEEEEECSEE
T ss_pred CCcceEEEEeCCCEEEEECCCCEEEEEEECCee
Confidence 345567776 6999999999999998865
No 5
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.89 E-value=88 Score=27.92 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=17.9
Q ss_pred HHHHHHhhchhhccCCcccc
Q 008228 245 TNELLRTGCVWLMGVPAGFK 264 (573)
Q Consensus 245 ~~~~L~~~i~WLmg~PaGLK 264 (573)
..|.+++.++|...||.||-
T Consensus 326 lee~I~~~i~w~~~n~~~~~ 345 (346)
T d1ek6a_ 326 LDRMCEDLWRWQKQNPSGFG 345 (346)
T ss_dssp HHHHHHHHHHHHHHCTTCSC
T ss_pred HHHHHHHHHHHHHhCHhhcC
Confidence 47899999999999999983
No 6
>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}
Probab=5.74 E-value=1.2e+02 Score=23.78 Aligned_cols=19 Identities=16% Similarity=0.461 Sum_probs=16.5
Q ss_pred cccccCCcceEEEEeeCCC
Q 008228 24 GDWCLNAMSTYVILYETPR 42 (573)
Q Consensus 24 ~~~~~~~~~~~vi~y~~P~ 42 (573)
-+|.|+|.+|.+++||.+-
T Consensus 22 ~lwAP~A~~V~L~l~~~~~ 40 (115)
T d2fhfa1 22 RVWAPTAQQVELVIYSADK 40 (115)
T ss_dssp EEECTTCSEEEEEEECTTC
T ss_pred EEECCCCCEEEEEEECCCC
Confidence 3789999999999999764
No 7
>d1ytqa2 b.11.1.1 (A:104-194) beta-Crystallin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.64 E-value=68 Score=24.86 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=21.3
Q ss_pred CCcceEE-----EEeeCCCCCccccccCCCC
Q 008228 29 NAMSTYV-----ILYETPRYGACHFSLSFWN 54 (573)
Q Consensus 29 ~~~~~~v-----i~y~~P~~~~~~~sl~~~~ 54 (573)
.+.|++| ++||-|.+.+.|+-|.+|+
T Consensus 36 ~v~Si~V~~G~Wv~Ye~~nf~G~~~~Le~Ge 66 (91)
T d1ytqa2 36 KVSSVRVQSGTWVGYQYPGYRGLQYLLEKGD 66 (91)
T ss_dssp CCCEEEECSSCEEEEEETTTEEEEEEECSEE
T ss_pred ceeEEEecCCCEEEEecCCcEEEEEEECCcc
Confidence 3456766 6999999999999998865
No 8
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=5.37 E-value=1e+02 Score=27.16 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=29.1
Q ss_pred hhhheeeccccccccCCcceEEEEeeCCCCCccc-ccc
Q 008228 14 FLNCITFTGTGDWCLNAMSTYVILYETPRYGACH-FSL 50 (573)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~vi~y~~P~~~~~~-~sl 50 (573)
+|=|-+.-+.||..|+|. .||.||.|.+|-.| .-|
T Consensus 93 iLVaTtViE~GIDip~a~--~iii~~a~~fglsqlhQl 128 (206)
T d1gm5a4 93 ILVSTTVIEVGIDVPRAN--VMVIENPERFGLAQLHQL 128 (206)
T ss_dssp BCCCSSCCCSCSCCTTCC--EEEBCSCSSSCTTHHHHH
T ss_pred EEEEehhhhccccccCCc--EEEEEccCCccHHHHHhh
Confidence 456888899999999986 57999999999887 443
No 9
>d1vgga_ d.256.1.1 (A:) Hypothetical protein TT1634 (TTHA1091) {Thermus thermophilus [TaxId: 274]}
Probab=5.12 E-value=1.1e+02 Score=26.77 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=17.9
Q ss_pred cccccCCcceEEEEeeCCCC
Q 008228 24 GDWCLNAMSTYVILYETPRY 43 (573)
Q Consensus 24 ~~~~~~~~~~~vi~y~~P~~ 43 (573)
+|+|+-|-.+|||+.+++.-
T Consensus 107 ~IfcATANP~eVIvAet~qG 126 (161)
T d1vgga_ 107 RIYAATANPLKVVVAEEGEQ 126 (161)
T ss_dssp EEEEEESSCEEEEEEEETTE
T ss_pred EEEEecCCCEEEEEEEcCCC
Confidence 68999999999999998764
No 10
>d1h4ax1 b.11.1.1 (X:1-85) gamma-Crystallin {Human (Homo sapiens), isoform D [TaxId: 9606]}
Probab=5.04 E-value=1.1e+02 Score=23.03 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=21.2
Q ss_pred CCcceEEE-----EeeCCCCCccccccCCCC
Q 008228 29 NAMSTYVI-----LYETPRYGACHFSLSFWN 54 (573)
Q Consensus 29 ~~~~~~vi-----~y~~P~~~~~~~sl~~~~ 54 (573)
++.|++|. +||-|.+...|+-|.+|+
T Consensus 31 ~v~Si~V~~G~Wv~ye~~~f~G~~~~L~~Ge 61 (85)
T d1h4ax1 31 RCNSARVDSGCWMLYEQPNYSGLQYFLHRGD 61 (85)
T ss_dssp CCSEEEEEESEEEEEEETTTEEEEEEECSEE
T ss_pred ceeEEEEeCCCEEEEccCCceeeEEEECCcc
Confidence 34577774 999999999999998865
Done!