Query 008229
Match_columns 573
No_of_seqs 190 out of 386
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 21:14:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.4 6.3E-13 2.2E-17 138.1 14.1 300 111-433 20-383 (408)
2 3zy2_A Putative GDP-fucose pro 99.0 2E-09 6.8E-14 112.0 13.3 274 111-430 6-348 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 97.0 0.036 1.2E-06 60.4 19.2 251 113-429 145-420 (526)
4 2hhc_A NODZ, nodulation fucosy 96.3 0.098 3.4E-06 52.3 16.1 267 112-423 3-294 (330)
5 3l32_A Phosphoprotein; antipar 32.0 17 0.00058 27.7 1.3 22 251-272 2-23 (45)
6 2eqr_A N-COR1, N-COR, nuclear 22.4 58 0.002 25.2 2.9 21 324-344 8-28 (61)
7 1l2m_A REP protein; A+B fold, 20.2 1E+02 0.0034 27.7 4.3 27 328-355 17-43 (118)
8 2fr5_A Cytidine deaminase; tet 17.6 99 0.0034 28.2 3.8 95 277-382 38-143 (146)
9 1p3q_Q VPS9P, vacuolar protein 15.9 31 0.0011 27.2 -0.0 37 363-404 14-51 (54)
10 1uwz_A Cytidine deaminase; CDD 14.8 1.4E+02 0.0047 26.7 3.9 98 275-382 24-131 (136)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.44 E-value=6.3e-13 Score=138.11 Aligned_cols=300 Identities=19% Similarity=0.250 Sum_probs=166.4
Q ss_pred CCCcEEEEEec-C-CchhhHHHHHHHHHHHHHhCCe----EEeeccCCCcccCCCC------CCCccccHHHH-------
Q 008229 111 HSNRYLAIVTS-G-GLNQQRTGIIDAVVAARILNAT----LVIPKLDQKSFWKDAS------DFSEIFDVDRF------- 171 (573)
Q Consensus 111 ~snGYL~V~~n-G-GLNQqR~~IcDaVaVARiLNAT----LViP~Ld~~s~W~D~S------~F~DIFDvdhF------- 171 (573)
..++||+-..+ | |.|.||..+-.|.++|+.||.| ||||-...-.-|+-.+ .|++.||++.+
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~~~vpVI 99 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI 99 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHHTTSCEE
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHHhhCCee
Confidence 45899998864 5 8999999999999999999999 9999765433454432 69999999864
Q ss_pred -----HHhccCce-EEcccC---CcccC-CCCCC-ccc-----------------cCCCCCCh------------HHHHH
Q 008229 172 -----ISVLSKDV-KIIKQI---PRKGG-KSLTP-YHM-----------------RVPRKCNE------------KCYQN 211 (573)
Q Consensus 172 -----I~sL~~dV-rIVk~L---P~~~~-~~~~~-~~~-----------------r~p~~~s~------------~yY~~ 211 (573)
++.+.+.+ ..|-.+ +.... ..... ... .-|.|... .....
T Consensus 100 ~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~~~~~~~ 179 (408)
T 4ap5_A 100 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQGSAS 179 (408)
T ss_dssp EHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEEECSBGG
T ss_pred EHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEEEeecch
Confidence 33332221 111000 00000 00000 000 00101000 00011
Q ss_pred hhhHhHhhc---ceEEEecccccccCCC-chHHHhhhhhccccccccchHHHHHHHHHHHHHHhcCCceEEEEeecccch
Q 008229 212 RVLPVLLKR---HAVQLSKFDYRLANKL-DTDLQKLRCRVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDM 287 (573)
Q Consensus 212 ~vLP~l~k~---~VI~l~~fd~rLa~~l-p~eiQrLRCrvnf~ALrF~p~I~~lg~~LV~RLR~~~gpfIALHLRfE~DM 287 (573)
.+-|.+.+. .-+-+..+...|.+.. ..+...+| ..|+|++.|.++|+..++..-. ++|+++|+|...|+
T Consensus 180 ~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~--~~~~~~h~r~~~dw 252 (408)
T 4ap5_A 180 IVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLN--STDDADRIPFQEDW 252 (408)
T ss_dssp GGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHC--CCTTTTTCCCCSSG
T ss_pred hhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhC--cccceeecccchhH
Confidence 123444332 2233333444444422 23444443 4799999999999999876543 46777777777666
Q ss_pred hhhccCCCCCChHHHHHHHHHHHHhhhhcCCCchhhhcCCC-CCCCHHHHHHHHHHhCCCCcceEEEEeccccCCccccc
Q 008229 288 LAFSGCYYGGGDKERKELGAIRKRWKTLHISNPDKERRHGK-CPLTPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLA 366 (573)
Q Consensus 288 LAfsgC~~gg~~~E~~EL~~~R~~wk~~~~~~~~~~R~~G~-CPLTPeEvgl~LrALGf~~~T~IYlAaGeiyGG~~~l~ 366 (573)
... |.......-. .+...|+-..+-...... +|-.++-+..+.+.+.=-+-+.||||+-+ .+..+.
T Consensus 253 ~~~--~~~~~~~~~~--------~y~~~H~Rr~d~~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~---~~~~~~ 319 (408)
T 4ap5_A 253 MKM--KVKLGSALGG--------PYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDA---VRKEYE 319 (408)
T ss_dssp GGC--CCCTTCBCCE--------EEEEEEECCTTTTTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECC---CHHHHH
T ss_pred hhh--hcccccccCC--------CccccccccccchhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC---chhHHH
Confidence 553 3321100000 000001100000111112 23333222223222222244579999875 445578
Q ss_pred chHhhcCCccccccccccccCCCCCcccccchhheeeecCCceeeeCCCCchhhhhhhhccccCCCc
Q 008229 367 PLKALFPNFYSKETIASKELEPFSSFSSRMAALDFIVCDESDIFVTNNNGNMAKILAGRRKYFGHKP 433 (573)
Q Consensus 367 pL~~~FPnl~tKetLas~EL~pF~~~ss~~AALDY~Vc~~SDVFVpt~~GNma~~V~GhR~y~G~~k 433 (573)
-|++.+|.++.-..-.. ++.++ .....|.||-+||..|++||+|....|...|.=.|-+.|+..
T Consensus 320 ~l~~~~~~~~~~~~~~~-~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 320 ELKKLLPEMVRFEPTWE-ELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp HHHHHCTTEECCCCCHH-HHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred HHHHhCCCcEEecCcch-hhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence 89999998764322111 33333 234578999999999999999999999999999999999764
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.01 E-value=2e-09 Score=111.96 Aligned_cols=274 Identities=17% Similarity=0.255 Sum_probs=160.0
Q ss_pred CCCcEEEEE-ecCCchhhHHHHHHHHHHHHHhCCeEEeeccCCCcccCCCC---CCCccccHHHHHHhccCceEEcccC-
Q 008229 111 HSNRYLAIV-TSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDAS---DFSEIFDVDRFISVLSKDVKIIKQI- 185 (573)
Q Consensus 111 ~snGYL~V~-~nGGLNQqR~~IcDaVaVARiLNATLViP~Ld~~s~W~D~S---~F~DIFDvdhFI~sL~~dVrIVk~L- 185 (573)
.+||||+-= |-|-+-+|-...--+.+.|+.||.|||||-+-.-.. ..+ .|++-|+++...++ ..|-.+.+.
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~--~~~~~vpf~~yF~v~~l~~y--hrvi~me~Fm 81 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH--PETKMIPFEFLFQVGTVAKY--TRVVTMQEFT 81 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS--SSCEEECHHHHBCHHHHTTT--SCEECHHHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC--Ccccccchhheeecchhhhh--ceeeeHHHHH
Confidence 369999885 999999999999999999999999999997653222 224 48888888763332 122222221
Q ss_pred --------CcccC----------------------CCCCCc-----cccCCC-----CCC----hHHHHHhhhHhH----
Q 008229 186 --------PRKGG----------------------KSLTPY-----HMRVPR-----KCN----EKCYQNRVLPVL---- 217 (573)
Q Consensus 186 --------P~~~~----------------------~~~~~~-----~~r~p~-----~~s----~~yY~~~vLP~l---- 217 (573)
|++-+ +..+|. .+.|-. ... -+|-+......+
T Consensus 82 ~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~~~ 161 (362)
T 3zy2_A 82 KKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLEKF 161 (362)
T ss_dssp HHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHHHS
T ss_pred HHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHHHhC
Confidence 21110 000110 000000 000 001001111111
Q ss_pred --hhcceEEEecccccccCC-CchHHHhhhhhccccccccchHHHHHHHHHHHHHHhcCCceEEEEeecccchhhhccCC
Q 008229 218 --LKRHAVQLSKFDYRLANK-LDTDLQKLRCRVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCY 294 (573)
Q Consensus 218 --~k~~VI~l~~fd~rLa~~-lp~eiQrLRCrvnf~ALrF~p~I~~lg~~LV~RLR~~~gpfIALHLRfE~DMLAfsgC~ 294 (573)
.+|=|+.|++.-..-.-. ---.||| -|++++.|.+.|++.++.-- .+|||++|||-=.|+.-. |.
T Consensus 162 p~~~~pVlAf~gaPa~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L--~rpyVgIHLR~G~DW~~a--C~ 229 (362)
T 3zy2_A 162 PSEEYPVLAFSSAPAPFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANL--AKPFVAVHLRNDADWVRV--CE 229 (362)
T ss_dssp CTTTCSEEEESSCSSCSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHC--CSSEEEEEECCCHHHHHH--HH
T ss_pred CcccCceEeecCCCCCCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhc--CCCeEEEEEecCCcHHHH--Hh
Confidence 146777776643221100 0123444 48999999999999988742 469999999998899866 77
Q ss_pred CCCChHHHHHHHHHHHHhhhhcCC-Cch---hhhcCC-----CCCCCHHH----HHHHHHHhCCCCcceEEEEeccccCC
Q 008229 295 YGGGDKERKELGAIRKRWKTLHIS-NPD---KERRHG-----KCPLTPLE----VGLMLRALGYGSDVHIYVASGEVYGG 361 (573)
Q Consensus 295 ~gg~~~E~~EL~~~R~~wk~~~~~-~~~---~~R~~G-----~CPLTPeE----vgl~LrALGf~~~T~IYlAaGeiyGG 361 (573)
+--.. + ..+.. .|. -....| .|==+.++ |..+++.+ +-..||||+...
T Consensus 230 hlk~~-~------------~~~lfaSPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~---~lksVFIATDa~--- 290 (362)
T 3zy2_A 230 HIDTT-T------------NRPLFASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSI---GAKSVFVASDKD--- 290 (362)
T ss_dssp TCCTT-T------------CCCCTTTHHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHH---TCSEEEEEESSC---
T ss_pred hhccc-c------------CcccccCCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhc---CCcEEEEecCCH---
Confidence 52110 0 00000 000 001111 23112333 44445555 356899999763
Q ss_pred cccccchHhhcCCccccccccccccCCCCCcccccchhheeeecCCceeeeCCCCchhhhhhhhccccC
Q 008229 362 EETLAPLKALFPNFYSKETIASKELEPFSSFSSRMAALDFIVCDESDIFVTNNNGNMAKILAGRRKYFG 430 (573)
Q Consensus 362 ~~~l~pL~~~FPnl~tKetLas~EL~pF~~~ss~~AALDY~Vc~~SDVFVpt~~GNma~~V~GhR~y~G 430 (573)
..+.-|+++|+.... .+ . -+.| -.|+||.+||.+||+||+|....|...|.=.|--.|
T Consensus 291 -~~~~ELk~~L~~~~v--~v-v-~~~p------e~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 291 -HMIDEINEALKPYEI--EA-H-RQEP------DDMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp -CCHHHHHHHHGGGTC--CE-E-CCSS------CCHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred -HHHHHHHHHhhccCc--eE-E-EeCC------chhHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 457888888864210 01 1 1222 179999999999999999999999999999998888
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=96.95 E-value=0.036 Score=60.41 Aligned_cols=251 Identities=15% Similarity=0.170 Sum_probs=139.8
Q ss_pred CcEEEEEe--cCCchhhHHHHHHHHHHHHHhCCeEEeeccCCCcccCCC-CCCCccccHHHHHHhccCceEEcccCCccc
Q 008229 113 NRYLAIVT--SGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDA-SDFSEIFDVDRFISVLSKDVKIIKQIPRKG 189 (573)
Q Consensus 113 nGYL~V~~--nGGLNQqR~~IcDaVaVARiLNATLViP~Ld~~s~W~D~-S~F~DIFDvdhFI~sL~~dVrIVk~LP~~~ 189 (573)
..||+... ..|+--+-..++=+..+|-.+|-||||-.-. |.-. ..|+++|.. +...+... |..
T Consensus 145 aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s~~C~~~-------~~~- 210 (526)
T 2de0_X 145 AKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VSETCTDR-------SGI- 210 (526)
T ss_dssp SCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SCSSCCCC-------CCS-
T ss_pred CCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cCccccCC-------Ccc-
Confidence 47888876 4788888888888999999999999995533 4332 468888874 11111110 100
Q ss_pred CCCCCCccccCCCCCChHHHHHhhhHhHhhcceEEEecccc--c---ccC-CCchH----HHhhhh--------hccccc
Q 008229 190 GKSLTPYHMRVPRKCNEKCYQNRVLPVLLKRHAVQLSKFDY--R---LAN-KLDTD----LQKLRC--------RVNYHA 251 (573)
Q Consensus 190 ~~~~~~~~~r~p~~~s~~yY~~~vLP~l~k~~VI~l~~fd~--r---La~-~lp~e----iQrLRC--------rvnf~A 251 (573)
....|..... -..+.||.+...++ + +.. .+|.+ ++++.- .+.-.-
T Consensus 211 ---------~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q~~~yl 273 (526)
T 2de0_X 211 ---------STGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYL 273 (526)
T ss_dssp ---------CCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred ---------ccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHHHHHHH
Confidence 0000111000 12345554433221 1 111 34443 333321 111112
Q ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEeecccchhhhccCCCCCChHHHHHHHHHHHHhhhhcCCCchhhhcCCCCCC
Q 008229 252 LSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLHISNPDKERRHGKCPL 331 (573)
Q Consensus 252 LrF~p~I~~lg~~LV~RLR~~~gpfIALHLRfE~DMLAfsgC~~gg~~~E~~EL~~~R~~wk~~~~~~~~~~R~~G~CPL 331 (573)
+|++++|++.-+.+.+.+.- ++|.|+||.|-- |-++.. ....+- .+-+..+...+..
T Consensus 274 ~rP~~~i~~~I~~~~~~l~~-~~piVGVHIRrG-Dk~~~E---~~~~~~-~~Y~~~v~~~~~~----------------- 330 (526)
T 2de0_X 274 IRPQPWLEKEIEEATKKLGF-KHPVIGVHVRRT-DKVGTE---AAFHPI-EEYMVHVEEHFQL----------------- 330 (526)
T ss_dssp TCBCHHHHHHHHHHHHHHTC-CSSEEEEEECCC------C---CCSCSH-HHHHHHHHHHHHH-----------------
T ss_pred cCCCHHHHHHHHHHHHHhCC-CCCEEEEEEeCC-CCCccc---cccCCH-HHHHHHHHHHHHH-----------------
Confidence 89999999999998888654 579999999974 443321 111111 1111111111111
Q ss_pred CHHHHHHHHHHhCCCCcceEEEEeccccCCcccccchHhhcCCc--ccccccccc-cc-CCCCCcccccchhheeeecCC
Q 008229 332 TPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNF--YSKETIASK-EL-EPFSSFSSRMAALDFIVCDES 407 (573)
Q Consensus 332 TPeEvgl~LrALGf~~~T~IYlAaGeiyGG~~~l~pL~~~FPnl--~tKetLas~-EL-~pF~~~ss~~AALDY~Vc~~S 407 (573)
|+.......+.||||+.+ ...+.-+++.||+. ++-...... .+ ..+...+-..+.+|.++-+++
T Consensus 331 --------l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~c 398 (526)
T 2de0_X 331 --------LARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQA 398 (526)
T ss_dssp --------HHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHS
T ss_pred --------HHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcC
Confidence 222246778999999987 35667788889986 322222111 11 111111224678999999999
Q ss_pred ceeeeCCCCchhhhhhhhcccc
Q 008229 408 DIFVTNNNGNMAKILAGRRKYF 429 (573)
Q Consensus 408 DVFVpt~~GNma~~V~GhR~y~ 429 (573)
|+||.|.++|+.+++...+.-.
T Consensus 399 d~~Vgt~sS~~srla~~l~~~~ 420 (526)
T 2de0_X 399 DFLVCTFSSQVCRVAYEIMQTL 420 (526)
T ss_dssp SEEEECTTSHHHHHHHHHHTTS
T ss_pred CeeecCCCCHHHHHHHHHhcCc
Confidence 9999999999999888765443
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=96.35 E-value=0.098 Score=52.30 Aligned_cols=267 Identities=13% Similarity=0.135 Sum_probs=123.9
Q ss_pred CCcEEEEEecCCchhhHHHHHHHHHHHHHhCCeEEeeccCCCcccCCCCCCCccccHHHHH--HhccCceEEcccCCccc
Q 008229 112 SNRYLAIVTSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDASDFSEIFDVDRFI--SVLSKDVKIIKQIPRKG 189 (573)
Q Consensus 112 snGYL~V~~nGGLNQqR~~IcDaVaVARiLNATLViP~Ld~~s~W~D~S~F~DIFDvdhFI--~sL~~dVrIVk~LP~~~ 189 (573)
+..||++...|||-+|--+++-|.++|...|.+|+|--.. ..|-. ..|.+.| .-.|. +...++..+-...|...
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f-p~~F~~v~~~~~~~~~~~~~~~~~ 78 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF-PAFFEPVEDIAGVPVICDDRVNQL 78 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH-HHHBCCCSEETTEEEECSGGGGTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC-cccccchhhhcccceecccccccc
Confidence 4579999999999888888999999999999999987554 23322 2355566 22232 10011100100011110
Q ss_pred CCCCCCc---cc-cCC---CCCC-hHHH--HHhhhHhHh--hc-ceEEEecccccccCCCchHHHhhhhhccccccccch
Q 008229 190 GKSLTPY---HM-RVP---RKCN-EKCY--QNRVLPVLL--KR-HAVQLSKFDYRLANKLDTDLQKLRCRVNYHALSFTD 256 (573)
Q Consensus 190 ~~~~~~~---~~-r~p---~~~s-~~yY--~~~vLP~l~--k~-~VI~l~~fd~rLa~~lp~eiQrLRCrvnf~ALrF~p 256 (573)
....+. .. +.+ ..+. .+.+ ......++. .. ....+.+. ..+--..-.++ -+.-|.-|++++
T Consensus 79 -~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~w~~~~~~----~~~i~~yl~p~~ 152 (330)
T 2hhc_A 79 -SFPGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVCD-ACLMWRCSEEA----ERLIFRNIKLRS 152 (330)
T ss_dssp -CCCSSEESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEEC-SCCTTSSCHHH----HHHHHHHSCBCH
T ss_pred -cCCCCcCchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcc-cccccchhhhh----HHHHHhcCCccH
Confidence 000000 00 000 0011 1111 011111221 11 10122220 00100111111 122247789999
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEeecccchhhhccCCCCCChHHH-HHHHHHHHH-hhhhcCCCchhhhcCCCCCCCHH
Q 008229 257 SIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKER-KELGAIRKR-WKTLHISNPDKERRHGKCPLTPL 334 (573)
Q Consensus 257 ~I~~lg~~LV~RLR~~~gpfIALHLRfE~DMLAfsgC~~gg~~~E~-~EL~~~R~~-wk~~~~~~~~~~R~~G~CPLTPe 334 (573)
+|++..+.+.+.+-. +.++|+||.|.=.+. ..|.++..-.+. .-+..+.+. .+.+
T Consensus 153 ~i~~~i~~~~~~~~~-~~~~VGVHIRrgD~~---~~~~~~~~~~~~~~~l~~~~~~i~~~~------------------- 209 (330)
T 2hhc_A 153 EIRARIDALYEEHFS-GHSIIGVHVRHGNGE---DIMEHAPYWADSELALHQVCMAIRKAK------------------- 209 (330)
T ss_dssp HHHHHHHHHHHHHTT-TSEEEEEEECC---------------CHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHhcc-CCceEEEEEecCCCC---cccccCcchHHHhHHHHHHHHHHHHHH-------------------
Confidence 999999888765422 369999999964321 123321100010 001111110 0000
Q ss_pred HHHHHHHHhCCC-CcceEEEEeccccCCcccccchHhhcCCccccc-cccccccCCCC----C-cccccchhheeeecCC
Q 008229 335 EVGLMLRALGYG-SDVHIYVASGEVYGGEETLAPLKALFPNFYSKE-TIASKELEPFS----S-FSSRMAALDFIVCDES 407 (573)
Q Consensus 335 Evgl~LrALGf~-~~T~IYlAaGeiyGG~~~l~pL~~~FPnl~tKe-tLas~EL~pF~----~-~ss~~AALDY~Vc~~S 407 (573)
.-.+ .++.||||+-+. ..++-|++.||++.+-. .+...--.+.. + .....+.+|.+.-+.+
T Consensus 210 --------~~~~~~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~Dm~LLS~c 277 (330)
T 2hhc_A 210 --------ALSYPKPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALIDMYLLARC 277 (330)
T ss_dssp --------TSCCSSCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHHHHHHTTC
T ss_pred --------hccCcCceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHHHHHHHcC
Confidence 0012 468999999985 35778999999843321 11100000100 0 1134588899999999
Q ss_pred ceee-eCCCCchhhhhh
Q 008229 408 DIFV-TNNNGNMAKILA 423 (573)
Q Consensus 408 DVFV-pt~~GNma~~V~ 423 (573)
|.+| +...+.|+...+
T Consensus 278 d~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 278 ATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp SEEEEESTTCGGGHHHH
T ss_pred CeeEECCCCCCHHHHHH
Confidence 9999 544555555433
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=32.04 E-value=17 Score=27.74 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=18.6
Q ss_pred ccccchHHHHHHHHHHHHHHhc
Q 008229 251 ALSFTDSIQKMGEKLVHQMRMK 272 (573)
Q Consensus 251 ALrF~p~I~~lg~~LV~RLR~~ 272 (573)
|+-|+.-+.++|.++|+||++-
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtG 23 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSG 23 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHHHHHHHHHHcc
Confidence 4567888999999999999873
No 6
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.42 E-value=58 Score=25.22 Aligned_cols=21 Identities=14% Similarity=-0.080 Sum_probs=17.6
Q ss_pred hcCCCCCCCHHHHHHHHHHhC
Q 008229 324 RRHGKCPLTPLEVGLMLRALG 344 (573)
Q Consensus 324 R~~G~CPLTPeEvgl~LrALG 344 (573)
.++...|.||+|..+|++++-
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~ 28 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFI 28 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHH
Confidence 346778999999999999874
No 7
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=20.23 E-value=1e+02 Score=27.65 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEEEe
Q 008229 328 KCPLTPLEVGLMLRALGYGSDVHIYVAS 355 (573)
Q Consensus 328 ~CPLTPeEvgl~LrALGf~~~T~IYlAa 355 (573)
.||||+||+...|+.|--+.+ ..||..
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i 43 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKI 43 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeee
Confidence 799999999999999886654 444443
No 8
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=17.59 E-value=99 Score=28.22 Aligned_cols=95 Identities=21% Similarity=0.338 Sum_probs=55.2
Q ss_pred EEEEeecccchhhhccCCCCCCh---HHHHHHHHHHHHhhh-----hcC-CCchhhhcCCCCC-CCHHH-HHHHHHHhCC
Q 008229 277 IALHLRFEPDMLAFSGCYYGGGD---KERKELGAIRKRWKT-----LHI-SNPDKERRHGKCP-LTPLE-VGLMLRALGY 345 (573)
Q Consensus 277 IALHLRfE~DMLAfsgC~~gg~~---~E~~EL~~~R~~wk~-----~~~-~~~~~~R~~G~CP-LTPeE-vgl~LrALGf 345 (573)
++--++.+.. -.|+||.-.... .-..|..++++.++. ..+ +... .+. | ++|=- =--+|.-+|
T Consensus 38 VGAal~~~dG-~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~G~~~l~~i~v~~~----~~~-~~~~PCG~Crq~l~E~~- 110 (146)
T 2fr5_A 38 VGAALLTGDG-RIFSGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISSD----LQE-EFISPCGACRQVMREFG- 110 (146)
T ss_dssp EEEEEEETTS-CEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEES----CSS-SCCCCCHHHHHHHHHTC-
T ss_pred EEEEEEeCCC-cEEEEEeccccCCCCCcCHHHHHHHHHHhCCCCceEEEEEEeC----CCC-cccCCCHHHHHHHHHhC-
Confidence 5556776644 455788654322 224455566654432 111 1111 111 2 34422 234666777
Q ss_pred CCcceEEEEeccccCCcccccchHhhcCCcccccccc
Q 008229 346 GSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIA 382 (573)
Q Consensus 346 ~~~T~IYlAaGeiyGG~~~l~pL~~~FPnl~tKetLa 382 (573)
.++.||++..+ |......|+++.|.-++.++|.
T Consensus 111 -~~~~v~~~~~~---g~~~~~~l~eLLP~~F~~~~l~ 143 (146)
T 2fr5_A 111 -TDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQ 143 (146)
T ss_dssp -SSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGT
T ss_pred -CCCEEEEECCC---CCEEEEEHHHhCCCCCChHHHh
Confidence 78999999876 6555678999999999888773
No 9
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=15.88 E-value=31 Score=27.16 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=19.6
Q ss_pred ccccchHhhcCCcccccccccc-ccCCCCCcccccchhheeee
Q 008229 363 ETLAPLKALFPNFYSKETIASK-ELEPFSSFSSRMAALDFIVC 404 (573)
Q Consensus 363 ~~l~pL~~~FPnl~tKetLas~-EL~pF~~~ss~~AALDY~Vc 404 (573)
..+..|++|||++ ++|.|-.- +- +.+...+|||....
T Consensus 14 ~~~~~L~~MFP~l-D~evI~~Vl~a----~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 14 DTLNTLQNMFPDM-DPSLIEDVCIA----AASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHSTTS-CHHHHHHHHHH----SCC--CGGGC----
T ss_pred HHHHHHHHHcccC-CHHHHHHHHHH----cCCCHHHHHHHHHh
Confidence 4578899999987 34444333 22 33456677776543
No 10
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=14.81 E-value=1.4e+02 Score=26.73 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=54.0
Q ss_pred ceEEEEeecccchhhhccCCCCCC------hHHHHHHHHHHHH--hhhhcC-CCchhhhcCCCCCCCHHHH-HHHHHHhC
Q 008229 275 HYIALHLRFEPDMLAFSGCYYGGG------DKERKELGAIRKR--WKTLHI-SNPDKERRHGKCPLTPLEV-GLMLRALG 344 (573)
Q Consensus 275 pfIALHLRfE~DMLAfsgC~~gg~------~~E~~EL~~~R~~--wk~~~~-~~~~~~R~~G~CPLTPeEv-gl~LrALG 344 (573)
-.|+.-++.+.. -.|+||.-... -.|+..|.++-.. |+...+ +-.+. .+ +++|=-+ .-+|..+|
T Consensus 24 ~~VGAal~~~dG-~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~G~~~~~~~~l~~~~---~~--~~~PCg~Crq~l~e~~ 97 (136)
T 1uwz_A 24 FQVGAALLTKDG-KVYRGCNIENAAYSMCNCAEATALFKAVSEGDTEFQMLAVAADT---PG--PVSPCGACRQVISELC 97 (136)
T ss_dssp CCEEEEEEETTS-CEEEEECBCCSSGGGCBCHHHHHHHHHHHHTCCCEEEEEEEESC---SS--SCCCCHHHHHHHHHHS
T ss_pred CCEEEEEEeCCC-eEEEEeCcccCCCCCccCHHHHHHHHHHHCCCCCeEEEEEEeCC---CC--ccCHHHHHHHHHHHcC
Confidence 357777777644 34478865421 2344444433321 322111 11010 11 3444332 23445554
Q ss_pred CCCcceEEEEeccccCCcccccchHhhcCCcccccccc
Q 008229 345 YGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIA 382 (573)
Q Consensus 345 f~~~T~IYlAaGeiyGG~~~l~pL~~~FPnl~tKetLa 382 (573)
+.++.||++..+ |.....+|.++.|.-++.++|.
T Consensus 98 -~~~~~v~~~~~~---g~~~~~~l~eLLP~~f~~~~l~ 131 (136)
T 1uwz_A 98 -TKDVIVVLTNLQ---GQIKEMTVEELLPGAFSSEDLH 131 (136)
T ss_dssp -CTTCEEEEECSS---SCEEEEEHHHHSTTCCCGGGC-
T ss_pred -CCCcEEEEECCC---CCEEEEEHHHhCCCCCCchHhc
Confidence 368999999876 5556778999999999998884
Done!