Query 008229
Match_columns 573
No_of_seqs 190 out of 386
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 21:14:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008229.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008229hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l5ia_ d.89.1.4 (A:) DNA-bind 35.4 17 0.0012 30.6 4.3 26 328-354 17-42 (118)
2 d1vjna_ d.157.1.4 (A:) Hypothe 29.4 52 0.0038 28.6 6.8 66 115-188 130-200 (209)
3 d2ihoa2 d.3.1.18 (A:156-293) A 21.2 4.6 0.00034 34.7 -2.0 34 144-177 31-69 (138)
4 d2fr5a1 c.97.1.1 (A:11-146) mo 19.4 33 0.0024 28.8 3.2 99 276-383 27-134 (136)
5 d1f54a_ a.39.1.5 (A:) Calmodul 18.4 53 0.0039 23.8 3.9 18 331-348 27-44 (77)
6 d2gh1a1 c.66.1.49 (A:13-293) M 17.3 23 0.0017 32.0 1.8 91 247-347 99-189 (281)
7 d1uwza_ c.97.1.1 (A:) mono-dom 17.1 53 0.0038 27.2 3.9 95 277-381 26-130 (130)
8 d1oqya2 a.5.2.1 (A:317-360) DN 15.4 12 0.00085 26.8 -0.7 26 332-357 1-30 (44)
9 d1wgla_ a.5.2.4 (A:) Toll-inte 14.9 16 0.0011 27.4 -0.1 49 361-413 9-57 (59)
10 d1wrka1 a.39.1.5 (A:4-85) Trop 14.4 1.2E+02 0.0084 22.5 5.0 18 331-348 33-50 (82)
No 1
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=35.41 E-value=17 Score=30.57 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEEE
Q 008229 328 KCPLTPLEVGLMLRALGYGSDVHIYVA 354 (573)
Q Consensus 328 ~CPLTPeEvgl~LrALGf~~~T~IYlA 354 (573)
+|||||||+...|+.|--+.+.. ||.
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~~-~i~ 42 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNKL-FIK 42 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCEE-EEE
T ss_pred CCCCCHHHHHHHHHHhcCCccee-EEE
Confidence 69999999999999997766554 444
No 2
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=29.42 E-value=52 Score=28.59 Aligned_cols=66 Identities=23% Similarity=0.432 Sum_probs=40.9
Q ss_pred EEEEEecCCchhhHHHHHHHHHHHHHhCCeEEeeccCCCcccCCCCCCCccccHHHHHHhccC-----ceEEcccCCcc
Q 008229 115 YLAIVTSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDASDFSEIFDVDRFISVLSK-----DVKIIKQIPRK 188 (573)
Q Consensus 115 YL~V~~nGGLNQqR~~IcDaVaVARiLNATLViP~Ld~~s~W~D~S~F~DIFDvdhFI~sL~~-----dVrIVk~LP~~ 188 (573)
.+++.+.|.. ...--+|+-+|+.|++-.|||- -|+.....| ++=.+|.|++.++. ++-.+..+|++
T Consensus 130 va~lpigg~~---~m~~~ea~~~~~~l~pk~viP~----H~~t~~~~~-~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~ 200 (209)
T d1vjna_ 130 VLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPM----HYKTKYLKF-NLLPVDDFLKLFDSYERVGNILELFEKPKE 200 (209)
T ss_dssp EEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEE----SCCCSSCCT-TCCCTHHHHTTSSCCEECCSEEEESSCCCS
T ss_pred EEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEe----ccCCccccc-CcCCHHHHHHHhhhhcccCcEEEeccCCCC
Confidence 4555544332 2356789999999999999996 133323333 45567889888663 33345555544
No 3
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=21.15 E-value=4.6 Score=34.67 Aligned_cols=34 Identities=29% Similarity=0.555 Sum_probs=28.5
Q ss_pred eEEeeccCCCcccCCCC-----CCCccccHHHHHHhccC
Q 008229 144 TLVIPKLDQKSFWKDAS-----DFSEIFDVDRFISVLSK 177 (573)
Q Consensus 144 TLViP~Ld~~s~W~D~S-----~F~DIFDvdhFI~sL~~ 177 (573)
-||||...-+++|+++- -=++|||-|.|--..+.
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~Ka 69 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKA 69 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHH
Confidence 48999999999999964 56789999999876654
No 4
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.42 E-value=33 Score=28.78 Aligned_cols=99 Identities=19% Similarity=0.307 Sum_probs=56.8
Q ss_pred eEEEEeecccchhhhccCCCC------CChHHHHHHHHHHHH--hhhhcCCCchhhhcCCCCCCCHHH-HHHHHHHhCCC
Q 008229 276 YIALHLRFEPDMLAFSGCYYG------GGDKERKELGAIRKR--WKTLHISNPDKERRHGKCPLTPLE-VGLMLRALGYG 346 (573)
Q Consensus 276 fIALHLRfE~DMLAfsgC~~g------g~~~E~~EL~~~R~~--wk~~~~~~~~~~R~~G~CPLTPeE-vgl~LrALGf~ 346 (573)
-|+-=++.+ |=-.|+||.-. +.-.|+..|.++-.. .+...++-.. ...+. +++|=- =--+|.- |.
T Consensus 27 ~VGAa~~~~-dG~i~~G~NvEnasy~~~iCAEr~Ai~~a~~~g~~~~~~~~~~~--~~~~~-~~~PCG~CRQ~l~E--~~ 100 (136)
T d2fr5a1 27 PVGAALLTG-DGRIFSGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISS--DLQEE-FISPCGACRQVMRE--FG 100 (136)
T ss_dssp CEEEEEEET-TSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEE--SCSSS-CCCCCHHHHHHHHH--TC
T ss_pred cEEEEEEeC-CCCEEEEEeecccccccccchhheeeeeeeccCCccEEEEEeec--ccCCC-CCCcchhhhHHHHh--hC
Confidence 365666665 55566777532 234688777766531 1111111000 00111 123311 1234555 45
Q ss_pred CcceEEEEeccccCCcccccchHhhcCCccccccccc
Q 008229 347 SDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIAS 383 (573)
Q Consensus 347 ~~T~IYlAaGeiyGG~~~l~pL~~~FPnl~tKetLas 383 (573)
.++.||+...+ |+.....|+++.|.-+++++|-.
T Consensus 101 ~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~~ 134 (136)
T d2fr5a1 101 TDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQK 134 (136)
T ss_dssp SSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGTC
T ss_pred CCceEEEECCC---CCEEEeEHHHhCcCCCChHHhCc
Confidence 78999999876 66677799999999999998853
No 5
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.45 E-value=53 Score=23.75 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 008229 331 LTPLEVGLMLRALGYGSD 348 (573)
Q Consensus 331 LTPeEvgl~LrALGf~~~ 348 (573)
++++|+..+|+.+|+.-+
T Consensus 27 I~~~el~~~l~~~g~~~t 44 (77)
T d1f54a_ 27 ISSSELATVMRSLGLSPS 44 (77)
T ss_dssp EEHHHHHHHHHHHTCCCC
T ss_pred EChHHHHHHHHHhCCCCC
Confidence 677888888888777643
No 6
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}
Probab=17.28 E-value=23 Score=31.96 Aligned_cols=91 Identities=20% Similarity=0.341 Sum_probs=53.7
Q ss_pred ccccccccchHHHHHHHHHHHHHHhcCCceEEEEeecccchhhhccCCCCCChHHHHHHHHHHHHhhhhcCCCchhhhcC
Q 008229 247 VNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLHISNPDKERRH 326 (573)
Q Consensus 247 vnf~ALrF~p~I~~lg~~LV~RLR~~~gpfIALHLRfE~DMLAfsgC~~gg~~~E~~EL~~~R~~wk~~~~~~~~~~R~~ 326 (573)
++.++|...+..+.+-+++.+.|+. +|.++....-+..++..+ ...+....+...+...++.|. ...+..
T Consensus 99 ~~~~~l~~~~d~~~~l~~~~~~Lkp-gG~lii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 168 (281)
T d2gh1a1 99 ICHAFLLHMTTPETMLQKMIHSVKK-GGKIICFEPHWISNMASY--LLDGEKQSEFIQLGVLQKLFE-------SDTQRN 168 (281)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTEEE-EEEEEEEECCHHHHHTSE--EETTSCHHHHCCHHHHHHHHH-------HHHHTT
T ss_pred EEehhhhcCCCHHHHHHHHHHHcCc-CcEEEEEECCccccchhh--ccCchhhhhhhhHHHHHHHHH-------HHHHHc
Confidence 4455666666777777777777765 467877665555455544 223322222222322222221 123456
Q ss_pred CCCCCCHHHHHHHHHHhCCCC
Q 008229 327 GKCPLTPLEVGLMLRALGYGS 347 (573)
Q Consensus 327 G~CPLTPeEvgl~LrALGf~~ 347 (573)
|..|....++..+|+..||.+
T Consensus 169 ~~~~~i~~~l~~~l~eaGf~~ 189 (281)
T d2gh1a1 169 GKDGNIGMKIPIYLSELGVKN 189 (281)
T ss_dssp CCCTTGGGTHHHHHHHTTCEE
T ss_pred CCCCCHHHHHHHHHHHcCCeE
Confidence 777777788999999999975
No 7
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}
Probab=17.09 E-value=53 Score=27.16 Aligned_cols=95 Identities=18% Similarity=0.259 Sum_probs=53.0
Q ss_pred EEEEeecccchhhhccCCCCC------ChHHHHHHHHHHHH--hhhhcC-CCchhhhcCCCCCCCH-HHHHHHHHHhCCC
Q 008229 277 IALHLRFEPDMLAFSGCYYGG------GDKERKELGAIRKR--WKTLHI-SNPDKERRHGKCPLTP-LEVGLMLRALGYG 346 (573)
Q Consensus 277 IALHLRfE~DMLAfsgC~~gg------~~~E~~EL~~~R~~--wk~~~~-~~~~~~R~~G~CPLTP-eEvgl~LrALGf~ 346 (573)
|+-=+|.+ |=-.|.||.-.. .-.|+..+..+... .+.+.+ +. .+..+ |++| .-=--+|.-++ +
T Consensus 26 VGAa~~~~-~G~i~~G~NvEnas~~~~~CAEr~Ai~~a~~~g~~~~~~i~v~---~~~~~--~~sPCG~CRQ~l~E~~-~ 98 (130)
T d1uwza_ 26 VGAALLTK-DGKVYRGCNIENAAYSMCNCAEATALFKAVSEGDTEFQMLAVA---ADTPG--PVSPCGACRQVISELC-T 98 (130)
T ss_dssp EEEEEEET-TSCEEEEECBCCSSGGGCBCHHHHHHHHHHHHTCCCEEEEEEE---ESCSS--SCCCCHHHHHHHHHHS-C
T ss_pred EEEEEEeC-CCCEEEEeeeccccccccccceehhhHHHHHhhhcceeeEEEE---cCCCC--ccCcCHHHHHHHHHhC-C
Confidence 55555654 444556654322 24688888777642 111111 11 01111 2222 11133455553 5
Q ss_pred CcceEEEEeccccCCcccccchHhhcCCccccccc
Q 008229 347 SDVHIYVASGEVYGGEETLAPLKALFPNFYSKETI 381 (573)
Q Consensus 347 ~~T~IYlAaGeiyGG~~~l~pL~~~FPnl~tKetL 381 (573)
.++.||+...+ |+-....|+++.|.=+++++|
T Consensus 99 ~~~~i~l~~~~---g~~~~~~l~eLLP~~F~~~dL 130 (130)
T d1uwza_ 99 KDVIVVLTNLQ---GQIKEMTVEELLPGAFSSEDL 130 (130)
T ss_dssp TTCEEEEECSS---SCEEEEEHHHHSTTCCCGGGC
T ss_pred CCcEEEEECCC---CCEEEEEHHHhCcCCCCcccC
Confidence 68999999887 554456899999999998876
No 8
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.36 E-value=12 Score=26.79 Aligned_cols=26 Identities=35% Similarity=0.613 Sum_probs=18.4
Q ss_pred CHHHHHHH--HHHhCCCCcc--eEEEEecc
Q 008229 332 TPLEVGLM--LRALGYGSDV--HIYVASGE 357 (573)
Q Consensus 332 TPeEvgl~--LrALGf~~~T--~IYlAaGe 357 (573)
||+|..-+ |.+|||+++. +.|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 56665444 6799999987 46777665
No 9
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.89 E-value=16 Score=27.44 Aligned_cols=49 Identities=27% Similarity=0.348 Sum_probs=30.7
Q ss_pred CcccccchHhhcCCccccccccccccCCCCCcccccchhheeeecCCceeeeC
Q 008229 361 GEETLAPLKALFPNFYSKETIASKELEPFSSFSSRMAALDFIVCDESDIFVTN 413 (573)
Q Consensus 361 G~~~l~pL~~~FPnl~tKetLas~EL~pF~~~ss~~AALDY~Vc~~SDVFVpt 413 (573)
-+..+.-|++|||++- ++.|-.- |.. +..+..+|+|-+.-..-+.|-|+
T Consensus 9 ~Ee~i~~LkeMFP~~D-~~vI~~V-L~a--~~G~vd~aid~LL~Msd~~~gp~ 57 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMD-QEVIRSV-LEA--QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp CHHHHHHHHHHCSSSC-HHHHHHH-HTT--TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cHHHHHHHHHHCCCCC-HHHHHHH-HHH--cCCCHHHHHHHHHhcCCCCcCCC
Confidence 3467899999999874 3344332 211 34456777777766666666554
No 10
>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=14.38 E-value=1.2e+02 Score=22.49 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 008229 331 LTPLEVGLMLRALGYGSD 348 (573)
Q Consensus 331 LTPeEvgl~LrALGf~~~ 348 (573)
+++.|...+|++||+..+
T Consensus 33 I~~~el~~~l~~lg~~~t 50 (82)
T d1wrka1 33 ISTKELGKVMRMLGQNPT 50 (82)
T ss_dssp BCHHHHHHHHHHTTCCCC
T ss_pred EeHHHHHHHHHHcCCCCC
Confidence 899999999999998753
Done!