BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008230
         (573 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D1Y|A Chain A, Crystal Structure Of Tt0321 From Thermus Thermophilus Hb8
 pdb|2D1Y|B Chain B, Crystal Structure Of Tt0321 From Thermus Thermophilus Hb8
 pdb|2D1Y|C Chain C, Crystal Structure Of Tt0321 From Thermus Thermophilus Hb8
 pdb|2D1Y|D Chain D, Crystal Structure Of Tt0321 From Thermus Thermophilus Hb8
          Length = 256

 Score = 31.2 bits (69), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 234 PLKLGLHRLNPSVSFNDKILSSAALGPQPQRKKSAVFRLSFKRRSCDGEETTEQCTSKKF 293
           PL++ ++ + P     + +L + AL P P+R +     L   RR    EE  E      F
Sbjct: 169 PLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVL---F 225

Query: 294 LYRPKAGFV 302
           L   KA F+
Sbjct: 226 LASEKASFI 234


>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase
          Suggests A Mechanism For Ca-Regulation
 pdb|3VF1|B Chain B, Structure Of A Calcium-Dependent 11r-Lipoxygenase
          Suggests A Mechanism For Ca-Regulation
          Length = 698

 Score = 30.0 bits (66), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 39 KLNNDPGSRVTDFAVSEYVHLDFEKGATTTCRRSEV 74
          KL    G+  + F++ +Y H DFE G T T  +S V
Sbjct: 43 KLTGKDGAETSAFSLDKYFHNDFESGGTDTYDQSGV 78


>pdb|1XV2|A Chain A, Crystal Structure Of A Protein Of Unknown Function Similar
           To Alpha-Acetolactate Decarboxylase From Staphylococcus
           Aureus
 pdb|1XV2|B Chain B, Crystal Structure Of A Protein Of Unknown Function Similar
           To Alpha-Acetolactate Decarboxylase From Staphylococcus
           Aureus
 pdb|1XV2|C Chain C, Crystal Structure Of A Protein Of Unknown Function Similar
           To Alpha-Acetolactate Decarboxylase From Staphylococcus
           Aureus
 pdb|1XV2|D Chain D, Crystal Structure Of A Protein Of Unknown Function Similar
           To Alpha-Acetolactate Decarboxylase From Staphylococcus
           Aureus
          Length = 237

 Score = 30.0 bits (66), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 13/51 (25%), Positives = 26/51 (50%)

Query: 133 GNISSSHMLQYESSSCFMDGKGKYEEYHESYVKIDGGKPEKYSSKDEFKGS 183
           GN+  + +   +    F+DGK  +   H+ ++++ G +   Y+S   FK S
Sbjct: 35  GNLGIATLTGSDGEVIFLDGKAYHANEHKEFIELKGDEKVPYASITNFKAS 85


>pdb|3RV2|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From
           Mycobacterium Marinum
 pdb|3RV2|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase From
           Mycobacterium Marinum
          Length = 407

 Score = 28.9 bits (63), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 12/97 (12%)

Query: 341 PEHSPFTPIGVDLFNCPRKINHIAQHLELPYLKADGKVPPLLIVNIQLPAYPAAMFLGDS 400
           PE  P  PI +      R++  + ++  LPYL+ DGK    +    ++P     + +   
Sbjct: 151 PELMPL-PIAL-AHRLSRRLTEVRKNGVLPYLRPDGKTQVTIAYEDRVPVRLDTVVISTQ 208

Query: 401 DGEGMSLVLYFKVSENFEKVISPQYQESIKKLVEDEM 437
             + + LV          K + P  +E + K V D++
Sbjct: 209 HADDIDLV----------KTLDPDIREQVLKTVLDDL 235


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,320,505
Number of Sequences: 62578
Number of extensions: 747783
Number of successful extensions: 1576
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1552
Number of HSP's gapped (non-prelim): 27
length of query: 573
length of database: 14,973,337
effective HSP length: 104
effective length of query: 469
effective length of database: 8,465,225
effective search space: 3970190525
effective search space used: 3970190525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)