Query 008230
Match_columns 573
No_of_seqs 150 out of 235
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 21:15:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008230.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008230hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eucb1 c.23.4.1 (B:246-393) S 7.8 84 0.0061 26.9 2.1 81 458-542 21-118 (148)
2 d1l5aa1 c.43.1.2 (A:1-174) Vib 5.7 2.7E+02 0.019 22.1 4.3 32 400-434 16-47 (174)
3 d2nu7b1 c.23.4.1 (B:239-388) S 5.7 1.3E+02 0.0093 25.7 2.2 27 458-486 21-47 (150)
4 d1h1ya_ c.1.2.2 (A:) D-ribulos 4.3 3.4E+02 0.024 23.5 4.2 24 456-479 3-26 (220)
5 d2gw6a1 c.52.2.1 (A:2-123) tRN 4.1 79 0.0058 26.5 -0.4 66 331-414 56-121 (122)
6 d1sdoa_ c.52.1.21 (A:) Restric 3.5 3.6E+02 0.026 23.8 3.6 71 473-547 100-170 (203)
7 d1unda_ a.14.1.1 (A:) Advillin 3.3 61 0.0044 21.9 -1.5 10 113-122 3-12 (36)
8 d1oo2a_ b.3.4.1 (A:) Transthyr 3.3 2.4E+02 0.018 22.6 2.0 32 71-104 14-52 (116)
9 d1ixca2 c.94.1.1 (A:90-294) Ly 3.3 6.7E+02 0.049 18.3 4.8 36 500-543 31-66 (205)
10 d2flia1 c.1.2.2 (A:3-219) D-ri 3.3 4.6E+02 0.034 22.5 4.2 25 455-479 2-26 (217)
No 1
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=7.78 E-value=84 Score=26.92 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=48.1
Q ss_pred eeeccCCCcccchhHHHHHHHhhCCccee---ec--Cc-ccee-------cCCC--eEEEEE--ecccchHHHHHHHHHH
Q 008230 458 MAGLVNPEDLNMSSAEKKLVNAYNEKPVL---SR--PQ-HEFY-------KGPN--YFEIDL--DIHRFSYISRKGFEAF 520 (573)
Q Consensus 458 Ip~VVngpwL~Lss~~r~l~qavn~KPvL---ir--pq-~~Y~-------rG~N--YlEIDV--DIhSFS~IARk~l~lv 520 (573)
|+.|+||- +|.++..=+++.+|+||+= ++ .+ .+.+ ..++ .+=|.| -|-+-..||+.++..+
T Consensus 21 IG~i~NGA--GlaMaTmD~i~~~Gg~pANFlDiGGga~~e~v~~al~iil~d~~Vk~IlINIfGGI~rcD~vA~GIv~A~ 98 (148)
T d1eucb1 21 IACFVNGA--GLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKAC 98 (148)
T ss_dssp EEEEESSH--HHHHHHHHHHHHTTCCBSEEEECCSSCCHHHHHHHHHHTTSCTTCCEEEEEEECSSSCHHHHHHHHHHHH
T ss_pred EEEEecCC--ccchhHHHHHHHcCCCeeeEEecCCCCCHHHHHHHHHHHHCCCCccEEEEEeeEeehhHHHHHHHHHHHH
Confidence 78899996 5677888899999999984 22 22 2222 2344 333322 2335577888888887
Q ss_pred HhhhcceEEEEEEEeecCCCCC
Q 008230 521 RERLANGILDVGLTIQAQKPEE 542 (573)
Q Consensus 521 ~g~lk~LVVDmGFvIEGqteEE 542 (573)
...- ..+=+=+-++|..+||
T Consensus 99 ~e~~--~~iPiVVRL~Gtn~ee 118 (148)
T d1eucb1 99 RELE--LKVPLVVRLEGTNVHE 118 (148)
T ss_dssp HHHT--CCSCEEEEEESTTHHH
T ss_pred HhcC--CCccEEEEeccCChHH
Confidence 7642 1222334456655444
No 2
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=5.72 E-value=2.7e+02 Score=22.10 Aligned_cols=32 Identities=3% Similarity=0.028 Sum_probs=21.4
Q ss_pred CCCCCeEEEEEEeeCcchhcccCchhHHHHHHHHH
Q 008230 400 SDGEGMSLVLYFKVSENFEKVISPQYQESIKKLVE 434 (573)
Q Consensus 400 ~DGeg~SlVlYF~l~e~~~keisp~f~~ll~Rfl~ 434 (573)
+|.+.|++..++.++.++.. +.+...+.+++.
T Consensus 16 p~~~~yni~~~~~i~g~ld~---~~l~~A~~~l~~ 47 (174)
T d1l5aa1 16 PHINLDTVAHSLRLTGPLDT---TLLLRALHLTVS 47 (174)
T ss_dssp TTSCCSEEEEEEEEESSCCH---HHHHHHHHHHHH
T ss_pred CCCCeeeccEEEEEcCCCCH---HHHHHHHHHHHH
Confidence 45567999999999876653 234455555555
No 3
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.69 E-value=1.3e+02 Score=25.69 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=22.2
Q ss_pred eeeccCCCcccchhHHHHHHHhhCCccee
Q 008230 458 MAGLVNPEDLNMSSAEKKLVNAYNEKPVL 486 (573)
Q Consensus 458 Ip~VVngpwL~Lss~~r~l~qavn~KPvL 486 (573)
|+.|+||- +|+++.-=++..+|+||+=
T Consensus 21 Ig~i~nGA--GlamaTmD~i~~~Gg~pAN 47 (150)
T d2nu7b1 21 IGCMVNGA--GLAMGTMDIVKLHGGEPAN 47 (150)
T ss_dssp EEEEESSH--HHHHHHHHHHHHTTCCBCE
T ss_pred EEEEEcCC--ccchhhHHHHHHCCCCeeE
Confidence 78899996 4677778888999999983
No 4
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=4.29 E-value=3.4e+02 Score=23.49 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=19.8
Q ss_pred ceeeeccCCCcccchhHHHHHHHh
Q 008230 456 KIMAGLVNPEDLNMSSAEKKLVNA 479 (573)
Q Consensus 456 KLIp~VVngpwL~Lss~~r~l~qa 479 (573)
||.|.|....|++|....+.+.+.
T Consensus 3 kI~pSil~ad~~~l~~ei~~l~~~ 26 (220)
T d1h1ya_ 3 KIAPSMLSSDFANLAAEADRMVRL 26 (220)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHT
T ss_pred EEEhhhhhcCHHHHHHHHHHHHHc
Confidence 899999999999988766666554
No 5
>d2gw6a1 c.52.2.1 (A:2-123) tRNA-splicing endonuclease subunit Sen15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.09 E-value=79 Score=26.52 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=39.9
Q ss_pred CCCCCCcccCCCCCCcceeEeeeeecCCccchhhccccccccccCCCCCcEEEEEEEcCCCcccccCCCCCCCCeEEEEE
Q 008230 331 YFKDKRKSPAPEHSPFTPIGVDLFNCPRKINHIAQHLELPYLKADGKVPPLLIVNIQLPAYPAAMFLGDSDGEGMSLVLY 410 (573)
Q Consensus 331 YlkDKkKvPA~~~aly~lvGVDlF~S~~KidhIA~~~~lp~~~~~~~~PfvfIVNiQLPgyP~~mF~Gd~DGeg~SlVlY 410 (573)
||.-|+|.-++.. ++-|+.++.=.+-.++..|-.+..+|+-. ...|.-|++-|+=+. |-|+|
T Consensus 56 yL~gr~~~~~~~q-v~iP~p~~~sls~~~i~~~~~~~~~p~~~--~~~~~s~tLai~d~D---------------STIvY 117 (122)
T d2gw6a1 56 CLVGTEIEGEGLQ-TVVPTPITASLSHNRIREILKASRKLQGD--PDLPMSFTLAIVESD---------------STIVY 117 (122)
T ss_dssp EEEEESSTTCCCC-EEEEEETTCEEEHHHHHHHHHHHHHHTTC--SSCCCEEEEEEECTT---------------SCEEE
T ss_pred EEEcccccCCCcc-EEEeeccccccCHHHHHHHHHhccCCcCC--cCccceEEEEEEcCC---------------CeEEE
Confidence 5555555555433 68888877766777777776554444322 245555666666555 46778
Q ss_pred EeeC
Q 008230 411 FKVS 414 (573)
Q Consensus 411 F~l~ 414 (573)
|+++
T Consensus 118 Yrmt 121 (122)
T d2gw6a1 118 YKLT 121 (122)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 8875
No 6
>d1sdoa_ c.52.1.21 (A:) Restriction endonuclease BstyI {Geobacillus stearothermophilus [TaxId: 1422]}
Probab=3.48 E-value=3.6e+02 Score=23.75 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=45.2
Q ss_pred HHHHHHhhCCcceeecCccceecCCCeEEEEEecccchHHHHHHHHHHHhhhcceEEEEEEEeecCCCCCccccc
Q 008230 473 EKKLVNAYNEKPVLSRPQHEFYKGPNYFEIDLDIHRFSYISRKGFEAFRERLANGILDVGLTIQAQKPEELPEQA 547 (573)
Q Consensus 473 ~r~l~qavn~KPvLirpq~~Y~rG~NYlEIDVDIhSFS~IARk~l~lv~g~lk~LVVDmGFvIEGqteEELPErL 547 (573)
.+..++.-+..+.-..-+..|.++.=-+||-.+ |. .++++..+...+-.-.+.++|+|..|-.- .+|...+
T Consensus 100 ~~~~~~~~~~~~~~~~~~iDf~K~~i~vEVqf~-~~-~~~~~dl~~~~l~~~~~~~i~vgi~It~~--~~l~~~~ 170 (203)
T d1sdoa_ 100 QKKVIEAAGKEALKSYNQTDFVKDRVAIEVQFG-KY-SFVAYDLFVKHMAFYVSDKIDVGVEILPM--KELSKEM 170 (203)
T ss_dssp HHHHHHHTTCCCEEEEEEEEEEETTEEEEECCS-BH-HHHHHHHHTHHHHHHHTTSCSEEEEEEEC--HHHHTTS
T ss_pred cccccchhcccccCccceeeeccccEEEEEEec-Cc-chhHHHHHHHHHHHhhcCcceEEEEEEEh--HHHHHHH
Confidence 344444444444433345567777777888875 55 88999988877543334569999999764 3455543
No 7
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.33 E-value=61 Score=21.93 Aligned_cols=10 Identities=60% Similarity=1.089 Sum_probs=5.4
Q ss_pred CCcccccccC
Q 008230 113 SDDDFISVHG 122 (573)
Q Consensus 113 ~d~~f~sv~~ 122 (573)
||+||.+|.|
T Consensus 3 sd~dF~~vFg 12 (36)
T d1unda_ 3 SEQDFVSVFG 12 (36)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHHHC
Confidence 4555555554
No 8
>d1oo2a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Gilthead seabream (Sparus aurata) [TaxId: 8175]}
Probab=3.31 E-value=2.4e+02 Score=22.64 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=22.2
Q ss_pred cCcccccceeeccc----ccc---ccccccccccccccccc
Q 008230 71 RSEVTNSAFHLTQM----QWH---LSQVDANVICQEDAWFD 104 (573)
Q Consensus 71 ~~~~~~~~~hltq~----~w~---~s~~d~~~~~~e~~w~d 104 (573)
+.++.++...|.++ +|+ .+..|+||-|.+ |.+
T Consensus 14 G~pA~gv~V~L~~~~~~g~~~~i~~~~Td~dGRi~~--~~~ 52 (116)
T d1oo2a_ 14 GTPAGSVALKVSQKTADGGWTQIATGVTDATGEIHN--LIT 52 (116)
T ss_dssp TEECTTCEEEEEEECTTSCEEEEEEEECCTTSCCTT--CSC
T ss_pred CCcCCCCEEEEEEECCCCCeEEEEEEEECCCCcCcc--ccC
Confidence 34999999999887 364 233778888843 653
No 9
>d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=3.30 E-value=6.7e+02 Score=18.28 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=21.6
Q ss_pred EEEEEecccchHHHHHHHHHHHhhhcceEEEEEEEeecCCCCCc
Q 008230 500 FEIDLDIHRFSYISRKGFEAFRERLANGILDVGLTIQAQKPEEL 543 (573)
Q Consensus 500 lEIDVDIhSFS~IARk~l~lv~g~lk~LVVDmGFvIEGqteEEL 543 (573)
++|+|..+. + .-+...+....+|+|+.........+
T Consensus 31 v~l~i~~~~-~-------~~l~~~l~~g~~D~~~~~~~~~~~~~ 66 (205)
T d1ixca2 31 ATVSLTHMT-K-------DEQVEGLLAGTIHVGFSRFFPRHPGI 66 (205)
T ss_dssp EEEEEEECC-H-------HHHHHHHHHTSCSEEEESCCCCCTTE
T ss_pred cEEEEEECC-C-------ccchhhhhhhhccccccccccccchh
Confidence 677776666 2 22334456668999987665544433
No 10
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}
Probab=3.28 E-value=4.6e+02 Score=22.50 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=20.0
Q ss_pred cceeeeccCCCcccchhHHHHHHHh
Q 008230 455 LKIMAGLVNPEDLNMSSAEKKLVNA 479 (573)
Q Consensus 455 FKLIp~VVngpwL~Lss~~r~l~qa 479 (573)
-|+.|.|....|+.|....+.+.++
T Consensus 2 ~kIspSil~~d~~~l~~~i~~~~~~ 26 (217)
T d2flia1 2 LKIAPSILAADYANFASELARIEET 26 (217)
T ss_dssp CEEEEBGGGSCGGGHHHHHHHHHHT
T ss_pred cEEEeehhhcCHHHHHHHHHHHHHc
Confidence 3899999999999887766666554
Done!