Query 008231
Match_columns 573
No_of_seqs 216 out of 2033
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 21:16:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 2E-31 6.8E-36 286.8 31.1 444 29-554 9-478 (491)
2 2xut_A Proton/peptide symporte 100.0 3.9E-31 1.3E-35 287.0 19.6 478 31-554 10-509 (524)
3 1pw4_A Glycerol-3-phosphate tr 100.0 3.6E-28 1.2E-32 257.9 29.4 400 31-549 26-435 (451)
4 4gc0_A D-xylose-proton symport 100.0 2.6E-28 8.8E-33 262.3 18.3 420 68-567 54-482 (491)
5 3o7q_A L-fucose-proton symport 100.0 2.3E-26 7.8E-31 243.1 31.2 357 29-512 22-408 (438)
6 2gfp_A EMRD, multidrug resista 99.9 4.9E-25 1.7E-29 228.3 15.8 348 36-510 3-351 (375)
7 2cfq_A Lactose permease; trans 99.9 3.2E-24 1.1E-28 226.1 8.2 390 32-549 6-401 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 3.5E-13 1.2E-17 142.2 14.0 179 32-240 251-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 4.9E-12 1.7E-16 132.9 15.9 167 32-234 257-425 (438)
10 2cfq_A Lactose permease; trans 99.3 2.5E-12 8.6E-17 134.9 11.1 178 33-243 220-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 5.7E-11 1.9E-15 126.9 10.4 186 34-244 284-474 (491)
12 4gc0_A D-xylose-proton symport 99.0 8.1E-10 2.8E-14 117.8 12.1 166 54-247 297-468 (491)
13 2gfp_A EMRD, multidrug resista 98.9 3.7E-10 1.3E-14 116.1 2.7 164 33-228 199-363 (375)
14 2xut_A Proton/peptide symporte 98.2 4.3E-06 1.5E-10 89.6 12.0 136 373-544 56-195 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=2e-31 Score=286.76 Aligned_cols=444 Identities=20% Similarity=0.262 Sum_probs=297.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cCCCchhhhHHHHHHHHHHHHHHhHHHHHhhh-ccchhHH
Q 008231 29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVGD-----LHLSSAKSATIVTNFMGTLNLLGLLGGFLADA-KLGRYLT 102 (573)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grr~~ 102 (573)
+++++..+.+....+++.+++|++.++++.|++++ +|++..+.+++.+.+.++..++++++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 44567889999999999999999999999999988 99999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCC
Q 008231 103 VAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSD 182 (573)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~ 182 (573)
+.++.++.+++.++++++. +.+.++++|++.|++.+...+...++++|++|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 141 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPF--------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCC--------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT
T ss_pred HHHHHHHHHHHHHHHHHhh--------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc
Confidence 9999999999999998864 44588999999999999999999999999999877
Q ss_pred chHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcccccc---CCCC-CchhHH
Q 008231 183 PKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFK---KPRG-SPLTVI 258 (573)
Q Consensus 183 ~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~ 258 (573)
.+ |+.++++++.+.++|..++|.+++++.+..||+++|++.++..+++.+.+.+..++..++ +++. ....+.
T Consensus 142 ~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4aps_A 142 RR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEV 217 (491)
T ss_dssp TH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHH
T ss_pred cc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchh
Confidence 43 777888899999999999999999999999999999988776666655544333322111 1111 111111
Q ss_pred HHHHH--------------HHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhh-hhhhhhhccccCCcccccchh
Q 008231 259 WRVLL--------------LAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAI-IEDNAVANENKNNSWIVSTVT 323 (573)
Q Consensus 259 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 323 (573)
.+... .....+.. +.++.......... ....... ..|+... .
T Consensus 218 ~~~~~~~g~~l~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~ 274 (491)
T 4aps_A 218 KPLLVKVSLAVAGFIAIIVVMNLVGWN-----------------SLPAYINLLTIVAIAIPVFYFA-----WMISSVK-V 274 (491)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHHHSSC-----------------CTTHHHHHHHHHHHHHHHHHHH-----HHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCc-----------------ccccchhhhhHHHHHHHHHHHH-----HHhhccc-c
Confidence 11000 00000000 00000000000000 0000000 0010000 0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhhhhhc-cccccccceecccccchhhHHHHHHHHHhhhhhhhhhhccc
Q 008231 324 EVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATF-MNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKI 402 (573)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~ 402 (573)
...++++......+++....++..+.+....+.....+ ...+ ..+.+.+.....+..++..++.+++.+|+.||.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~ 350 (491)
T 4aps_A 275 TSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ 350 (491)
T ss_dssp -------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC
Confidence 01122333333445555555566666555543332211 1111 134666777888888888889999888776663
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchh
Q 008231 403 THSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERM 482 (573)
Q Consensus 403 ~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 482 (573)
......+..+.++.+++++++........ ...+.+.+++++.+++.+++.+...+..++++.|..|++.
T Consensus 351 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 419 (491)
T 4aps_A 351 ------PSSPTKFAVGLMFAGLSFLLMAIPGALYG-----TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF 419 (491)
T ss_dssp --------CHHHHHHHHHHHHHHHTTTHHHHHHCC-----CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH
Confidence 23445577888888888777666432100 1223456677788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 008231 483 KSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYN 554 (573)
Q Consensus 483 rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 554 (573)
||+++|+.++...+|+.+++.+.+++.+. .....|++++++++++.++.+++.++.+++
T Consensus 420 ~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 420 NSQMMSMWFLSSSVGSALNAQLVTLYNAK-------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-------------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998776542 133567777777777777666665554433
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=3.9e-31 Score=286.97 Aligned_cols=478 Identities=23% Similarity=0.347 Sum_probs=284.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH
Q 008231 31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLH------LSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVA 104 (573)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~ 104 (573)
+++.++.+....++..+++|++.++++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34566778889999999999999999999999999 999999999999999999999999999999559999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCch
Q 008231 105 IFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPK 184 (573)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~ 184 (573)
++.++.+++.++++++. .+.+.++++|++.|++.+...+...++++|++|+++
T Consensus 90 ~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-- 142 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFE-------------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN-- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHTS-------------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT--
T ss_pred HHHHHHHHHHHHHHHhc-------------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc--
Confidence 99999999998888763 156788999999999999999999999999999888
Q ss_pred HHHhHHH---HHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHH
Q 008231 185 EEKAMIF---FFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRV 261 (573)
Q Consensus 185 ~~~~r~~---~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (573)
|++ .+++++.+.++|..++|.+++++.+..||+++|++.++..+++.+.+++..++.+++++++++.....+.
T Consensus 143 ----r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (524)
T 2xut_A 143 ----KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPV 218 (524)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC------------
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHH
Confidence 754 4555999999999999999999998899999999888776666555544444332222221111111111
Q ss_pred HHHHHhccCCCCCCCCCcchhccc-----ccCCCCCccchhhhhhhhhhhhhhccccCCccc-------ccchhhHHHHH
Q 008231 262 LLLAWKKRSHPYPDHPSLLNEYQN-----AKVPHTEKFKCLDKAAIIEDNAVANENKNNSWI-------VSTVTEVEEVK 329 (573)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 329 (573)
+....++++.+. +.......... ......+........... .....+.+...+|. ........+++
T Consensus 219 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (524)
T 2xut_A 219 IRSALLTKVEGK-GNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCA-MVLVMGFVGAGASLQLERARKSHPDAAVDGVR 296 (524)
T ss_dssp --------CTTH-HHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHH-HHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTT
T ss_pred HHHHHhhhhccc-Cccchhhhhhhhhhhhhhhcccchhhhhhhhhhh-hhhhhcccccchhhHHhhhhccccHhHHHHHH
Confidence 000111000000 00000000000 000000000000000000 00000000111220 00001112233
Q ss_pred HHHhHHHHHHHHHHHHHHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCC
Q 008231 330 MVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGM 409 (573)
Q Consensus 330 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~ 409 (573)
+.+.....+.....++..+.+..+.+..+....+... + .+.+.+...+.+..++..++.+++..+..+|+.++ .
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 370 (524)
T 2xut_A 297 SVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---L 370 (524)
T ss_dssp THHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---C
Confidence 3333334444444455555555554444333332211 0 23444555666666677777777653333443211 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHH
Q 008231 410 TSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGL 489 (573)
Q Consensus 410 ~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi 489 (573)
+..+.+..|.++.+++++++........ .....+.+++++.+++.+++++...+..++++.+.+|++.||+++|+
T Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 445 (524)
T 2xut_A 371 TALRKMGAGIAITGLSWIVVGTIQLMMD-----GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSF 445 (524)
T ss_dssp CCHHHHHTHHHHHHHHHHTTTTTTTTTT-----TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHH
Confidence 3445567788877777766554310000 01123566777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 008231 490 FLSAISMGMFVSSMLVSIVDKITNKHWLRS-NLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYN 554 (573)
Q Consensus 490 ~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 554 (573)
+++...+|+.+++.+.+.+.+.++.+|.++ ..+ .....|++.++++++++++++++.++.+++
T Consensus 446 ~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (524)
T 2xut_A 446 WTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYARSYQMQ 509 (524)
T ss_dssp HGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccccc--ccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999998875432234221 011 112237777888888777776666655444
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=3.6e-28 Score=257.86 Aligned_cols=400 Identities=9% Similarity=-0.029 Sum_probs=260.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231 31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT 110 (573)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 110 (573)
+++.++.+.+..+...+..+.+.+.++ ++.+++ .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence 455667777777777777766666655 455577 9999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHh----hccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHH
Q 008231 111 ALVVGLLTS----ATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEE 186 (573)
Q Consensus 111 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 186 (573)
+++.+++++ +. +++.++++|++.|++.+...+...++++|++|+++
T Consensus 103 ~~~~~~~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---- 152 (451)
T 1pw4_A 103 AAVMLFMGFVPWATS--------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE---- 152 (451)
T ss_dssp HHHHHHHHHCHHHHS--------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH----
T ss_pred HHHHHHHHhhhhccc--------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh----
Confidence 999999988 64 44588999999999999999999999999999888
Q ss_pred HhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHH
Q 008231 187 KAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLA 265 (573)
Q Consensus 187 ~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (573)
|++++++.+.+.++|..++|.+++++.+..| ||++|++.++..++..+..++..|+.+......+.
T Consensus 153 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 219 (451)
T 1pw4_A 153 --RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI----------- 219 (451)
T ss_dssp --HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-----------
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-----------
Confidence 9999999999999999999999999888888 99999988877666555444444432221110000
Q ss_pred HhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHH-hHHHHHHHHHHH
Q 008231 266 WKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVL-KLLPIWATCILF 344 (573)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ 344 (573)
.+..+. .. .+. +..+ ++...++........+.+.+. ..+..++.....
T Consensus 220 --------~~~~~~-~~--~~~-~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (451)
T 1pw4_A 220 --------EEYKND-YP--DDY-NEKA-------------------EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR 268 (451)
T ss_dssp --------TTTCCC------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred --------hhhccc-cc--ccc-hhhh-------------------hcccccccchHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 000000 00 000 0000 000000000000000111221 111122222222
Q ss_pred HHHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhh--hcccccccCCCchHHHHHHHHHHH
Q 008231 345 WTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPL--ARKITHSIQGMTSLQRVGTGLIFS 422 (573)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~~~ 422 (573)
+......+.++ .+..+.+ ....+.+.....++.++...+.+++.+|+ .+|. .+..+..+.
T Consensus 269 ~~~~~~~~~~~-~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-----------~~~~~~~~~ 330 (451)
T 1pw4_A 269 YGILDWSPTYL-KEVKHFA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-----------ATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHB-TTBSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-----------HHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----------hHHHHHHHH
Confidence 22222222111 1111111 11234455566667777777778887665 3332 133343333
Q ss_pred H-HHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHH-HHHH
Q 008231 423 V-IAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISM-GMFV 500 (573)
Q Consensus 423 ~-i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~l-g~~i 500 (573)
. ++++++... ...+.+......++.|++.....+..++++.+..|++.||++.|+.+....+ |+.+
T Consensus 331 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~ 398 (451)
T 1pw4_A 331 VTIATIVYWMN------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 398 (451)
T ss_dssp HHHHHHHTTSC------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHH
Confidence 3 444433321 1124455666677788887788888889999999999999999999999999 9999
Q ss_pred HHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008231 501 SSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAM 549 (573)
Q Consensus 501 g~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 549 (573)
++.+.+++.+.. ++...|++.+++.+++.++.+...+
T Consensus 399 ~~~~~g~l~~~~------------g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 399 ASAIVGYTVDFF------------GWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHSS------------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc------------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999987642 1345677777777777666655544
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=2.6e-28 Score=262.32 Aligned_cols=420 Identities=13% Similarity=0.009 Sum_probs=233.1
Q ss_pred chhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhh
Q 008231 68 SAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGK 147 (573)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (573)
..+.+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.++++++.......... ......-..
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~--------~~~~~~~a~ 124 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPD--------NTVPVYLAG 124 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS--------SSCCGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch--------hHHHHHHhh
Confidence 45678899999999999999999999999 999999999999999999998642111000000 000000124
Q ss_pred HHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcc--------cc
Q 008231 148 QLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDN--------VG 219 (573)
Q Consensus 148 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~--------~g 219 (573)
+.+.++++|+++|+|.|+..+..+.+++|..|++. |++..++.+.+..+|..+++.++..+... .+
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDG 198 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchh
Confidence 78899999999999999999999999999999988 99999999999999999998887765432 34
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccchhhh
Q 008231 220 RGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDK 299 (573)
Q Consensus 220 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (573)
|++.+.+..+..++..+. .+..|+.++....+...++..+.+.....+.. ...+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~-~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~------------------------~~~~~ 253 (491)
T 4gc0_A 199 WRYMFASECIPALLFLML-LYTVPESPRWLMSRGKQEQAEGILRKIMGNTL------------------------ATQAV 253 (491)
T ss_dssp HHHHHHTTHHHHHHHHHH-GGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH------------------------HHHHH
T ss_pred hHHHhhhhhhhhhhhhhh-hhcCCCChHHHHHcCchhHHHHhHHHhcCCch------------------------hHHHH
Confidence 666665554443333222 23333322110001111111111100000000 00000
Q ss_pred hhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHH-HHHHHHHHHHHhhcccchhhhhhhccccccccceecccccch
Q 008231 300 AAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLP-IWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSA 378 (573)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (573)
....... ..+++.. ........++...... .+............+.+.+.. ..... .........
T Consensus 254 ~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~ 319 (491)
T 4gc0_A 254 QEIKHSL--DHGRKTG-----GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK---TLGAS----TDIALLQTI 319 (491)
T ss_dssp HHHHHHH--HHHHHHT-----THHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSSCC----HHHHHHHHH
T ss_pred HHHHHHH--Hhhhhhh-----hHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH---hcCCC----ccchhhHHH
Confidence 0000000 0000000 0000000111111100 000000000000000000110 00000 111122233
Q ss_pred hhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHH
Q 008231 379 FLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFL 458 (573)
Q Consensus 379 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l 458 (573)
...+..++...+..++.||++||.. +..+...+.++++.+..... ........++..+++
T Consensus 320 ~~~~~~~~~~~~~~~l~dr~Grr~~-----------~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~ 379 (491)
T 4gc0_A 320 IVGVINLTFTVLAIMTVDKFGRKPL-----------QIIGALGMAIGMFSLGTAFY---------TQAPGIVALLSMLFY 379 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSHHH-----------HHHHHHHHHHHHHHHHHHHH---------TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcch-----------hccchHHHHHHHHHHHHHHh---------cccchHHHHHHHHHH
Confidence 4445555556666777777666632 55666666666665554321 111122222222222
Q ss_pred HHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHH
Q 008231 459 VGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGL 538 (573)
Q Consensus 459 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~ 538 (573)
.........|..+.+..|.+|.+.|++++|+.+..+.+++++++.+.+.+.+.. |... ..+....|++++++++
T Consensus 380 ~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~---~~~~---~~~~~~~~~i~~~~~~ 453 (491)
T 4gc0_A 380 VAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS---WLVA---HFHNGFSYWIYGCMGV 453 (491)
T ss_dssp HHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH---HHHH---HHTTCHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh---hhhhhHHHHHHHHHHH
Confidence 222223344777889999999999999999999999999999999988775421 1100 0112246788899999
Q ss_pred HHHHHHHHHHhhcchhhhccccCcccccc
Q 008231 539 LNFMVFLFFAMKHQYNVQHRVKGDKELEN 567 (573)
Q Consensus 539 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (573)
++.++.+++.||+|+++.||.+...|.++
T Consensus 454 ~~~i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 454 LAALFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp HHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred HHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence 99999999999999998887765554433
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=2.3e-26 Score=243.13 Aligned_cols=357 Identities=12% Similarity=0.063 Sum_probs=238.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 008231 29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFAS 108 (573)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 108 (573)
+++++.+..+....+...+......+. .+++.+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 345556666666666776666555444 4557889999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHH---HhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchH
Q 008231 109 VTALVVGLL---TSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKE 185 (573)
Q Consensus 109 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~ 185 (573)
+.+++.+++ +++ .+++.++++|++.|++.+...+...++++|++|+++
T Consensus 100 ~~~~~~~~~~~~~~~--------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEI--------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS--- 150 (438)
T ss_dssp HHHHHHHHHHHHHHT--------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT---
T ss_pred HHHHHHHHHHhcccc--------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh---
Confidence 999999888 554 367899999999999999999999999999999998
Q ss_pred HHhHHHHHHHHHHHHHhhhHHHHHHhhhhh-cccc-------------------------hhHHHHHHHHHHHHHHHHHH
Q 008231 186 EKAMIFFFNRFYFAISIGSLFAVIVLVYVQ-DNVG-------------------------RGWGYGISAGTMVVAAAILL 239 (573)
Q Consensus 186 ~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~ 239 (573)
|++++++.+.+.++|..++|.+++++. +..+ |+++|++.++..++..+.++
T Consensus 151 ---r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 151 ---GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 5554 99999876665554444333
Q ss_pred hc-CccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCccc
Q 008231 240 IG-TPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWI 318 (573)
Q Consensus 240 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (573)
+. .|+.++++++++ ++.+..+ ++
T Consensus 228 ~~~~p~~~~~~~~~~--------------------------------------~~~~~~~-----------------~~- 251 (438)
T 3o7q_A 228 LTKFPALQSDNHSDA--------------------------------------KQGSFSA-----------------SL- 251 (438)
T ss_dssp HCCCCCCTTTCCCCS--------------------------------------STTSHHH-----------------HH-
T ss_pred HHcCCcccccccccc--------------------------------------cccchhh-----------------hH-
Confidence 32 121111000000 0000000 00
Q ss_pred ccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhh
Q 008231 319 VSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPL 398 (573)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 398 (573)
....++++.....+..++............+.++..+..+.+ ....+.+.....++.++...+.+++.+|+
T Consensus 252 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~r~ 322 (438)
T 3o7q_A 252 ---SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT------AGFAANYLTGTMVCFFIGRFTGTWLISRF 322 (438)
T ss_dssp ---HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ---HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000001111111112222222222222222222122111212 11234455555666667777777887665
Q ss_pred hcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeeccc
Q 008231 399 ARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREG 478 (573)
Q Consensus 399 ~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~ 478 (573)
.+|+ .+..+.++..+++++..... .. +.+..+++.+++.+...|..+++..+..
T Consensus 323 ~~~~-----------~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 376 (438)
T 3o7q_A 323 APHK-----------VLAAYALIAMALCLISAFAG--------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNL 376 (438)
T ss_dssp CHHH-----------HHHHHHHHHHHHHHHHHHCC--------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred cchH-----------HHHHHHHHHHHHHHHHHHcC--------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5442 25566666666655544421 11 2334457778888888899999989999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008231 479 PERMKSMSTGLFLSAISMGMFVSSMLVSIVDKIT 512 (573)
Q Consensus 479 p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~ 512 (573)
|++ ++.+.++.. ...+|+.+++.+.|++.+..
T Consensus 377 ~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 377 GQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp GGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred ccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 977 899988877 67799999999999988753
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.92 E-value=4.9e-25 Score=228.34 Aligned_cols=348 Identities=11% Similarity=0.017 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 008231 36 GLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVG 115 (573)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~ 115 (573)
+.++...++..++.....+.+|. +.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++.++..+.+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 44566666777776666666655 5678999999999999999999999999999999998 999999999999999999
Q ss_pred HHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHH
Q 008231 116 LLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNR 195 (573)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 195 (573)
++.++ ++.+.+++.|++.|++.+...+...+++.|++|+++ |++++++
T Consensus 81 ~~~~~--------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 128 (375)
T 2gfp_A 81 VAVTT--------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSL 128 (375)
T ss_dssp HHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHH
T ss_pred HHHHh--------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHH
Confidence 98886 377889999999999999999999999999999988 9999999
Q ss_pred HHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCC
Q 008231 196 FYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPD 275 (573)
Q Consensus 196 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (573)
.+.+.++|..++|.+++++.+..||++.|++.++..++..+...+..|+.++.++++
T Consensus 129 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 185 (375)
T 2gfp_A 129 LNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR----------------------- 185 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC-----------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc-----------------------
Confidence 999999999999999999999889999999877765554432222222211100000
Q ss_pred CCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchh
Q 008231 276 HPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFT 355 (573)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 355 (573)
+ +...++ + ...++++.....+..++............+.+.
T Consensus 186 ---------------~--------------------~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (375)
T 2gfp_A 186 ---------------T--------------------RLLTSY---K-TLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLM 226 (375)
T ss_dssp ---------------C--------------------CTTTCS---T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSS
T ss_pred ---------------c--------------------cHHHHH---H-HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000001 0 111122221122222222222222222222222
Q ss_pred hhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHH-HHHHHHHHHHHHH
Q 008231 356 VEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIF-SVIAMIVSAVIEQ 434 (573)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-~~i~~i~~~~~~~ 434 (573)
.. ..+.+ ....+.+.....++.++..++.+++.+|..+ ++..+..+ ...+.........
T Consensus 227 ~~-~~g~~------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 227 GA-VLGLS------SMTVSILFILPIPAAFFGAWFAGRPNKRFST-------------LMWQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp HH-HHHHH------HHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-------------HHHHHHHHHHHTSSSSSHHHHH
T ss_pred HH-HhCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhh
Confidence 21 11111 1123344555556666666666666433221 13334333 2222221111100
Q ss_pred HHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008231 435 QRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDK 510 (573)
Q Consensus 435 ~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~ 510 (573)
.+.+.+.++...++.+++.+...+...++..|..| +.||++.|+.+....+|..+++.+.+.+.+
T Consensus 287 ----------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 287 ----------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred ----------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 01134445566788889999999999999999998 789999999999999999999998888764
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.89 E-value=3.2e-24 Score=226.06 Aligned_cols=390 Identities=12% Similarity=0.009 Sum_probs=222.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231 32 WLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA 111 (573)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 111 (573)
.|..+.+....++...++..+.++++.|+++++|+|..+.+++.+.+.++..++++++|+++||+ |||++++++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML 84 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 35666677766777777777788999999999999999999999999999999999999999998 99999998887765
Q ss_pred HHHHHH---HhhccCCCCCCCCCccccccccccccchhhHH-HHHHHHHHHHHhcCccccccccccccCCCCCCCchHHH
Q 008231 112 LVVGLL---TSATSIPSMRPPQCDDYRRKHHQCIEANGKQL-AMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEK 187 (573)
Q Consensus 112 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (573)
++...+ .++. .. ..++.++.+.+++.+...+...+...++.++.. .
T Consensus 85 ~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~ 134 (417)
T 2cfq_A 85 VMFAPFFIFIFGP--------------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----R 134 (417)
T ss_dssp SCHHHHHHHTHHH--------------------------HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----h
Confidence 432211 2210 00 012344555555555544444444444433221 1
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHh
Q 008231 188 AMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWK 267 (573)
Q Consensus 188 ~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (573)
.++..++..+...++|..++|.+++++.+ .+|++.|++.++..++..+..++..|+. ++..+
T Consensus 135 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------- 196 (417)
T 2cfq_A 135 RSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA---PSSAT-------------- 196 (417)
T ss_dssp HHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC---SCSSC--------------
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc---ccccc--------------
Confidence 16767778777889999999999999886 6899998876554333322222211111 00000
Q ss_pred ccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHH-HHHHHHHHH
Q 008231 268 KRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPI-WATCILFWT 346 (573)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 346 (573)
.++. .. ...++.+..+ + ....+.+........ +.....++.
T Consensus 197 -----~~~~---------~~-~~~~~~~~~~------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (417)
T 2cfq_A 197 -----VANA---------VG-ANHSAFSLKL------------------A-----LELFRQPKLWFLSLYVIGVSCTYDV 238 (417)
T ss_dssp -----SSSS---------SS-SCCCCCCHHH------------------H-----HHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -----cccc---------cc-cccccccHHH------------------H-----HHHhcCCchhhHHHHHHHHHHHHHH
Confidence 0000 00 0000000000 0 000001111111111 111111222
Q ss_pred HhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHH
Q 008231 347 VYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAM 426 (573)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~ 426 (573)
..++.+.++... ......+ ....+....++.+..++...+.+++.||+.+|+ .+..+.++.++++
T Consensus 239 ~~~~~~~~~~~~---~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~l~~~~~~~~~~~ 303 (417)
T 2cfq_A 239 FDQQFANFFTSF---FATGEQG-TRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----------ALLLAGTIMSVRI 303 (417)
T ss_dssp HHHHHHHHHHHT---SSSHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HhccCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-----------HHHHHHHHHHHHH
Confidence 212222222111 1100000 001123344444555566667777777665542 2455665655554
Q ss_pred HHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHH-HHHHHHHHHHHHHHHH
Q 008231 427 IVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGL-FLSAISMGMFVSSMLV 505 (573)
Q Consensus 427 i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi-~~~~~~lg~~ig~~~~ 505 (573)
+.+... .+.+.++...++.+++.....+..+.++.|..|++.||++.++ +++.+.+|+.++|.+.
T Consensus 304 ~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~ 369 (417)
T 2cfq_A 304 IGSSFA--------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369 (417)
T ss_dssp HHHTTC--------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHH
T ss_pred HHHHHh--------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhH
Confidence 443321 1333444555566666666667778899999999999999999 4888899999999999
Q ss_pred HHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008231 506 SIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAM 549 (573)
Q Consensus 506 ~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 549 (573)
|++.+.. ++...|.+.++++++++++.+...+
T Consensus 370 G~l~~~~------------g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 370 GNMYESI------------GFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HTHHHHS------------HHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHhc------------CcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9876531 2345666777777776665544443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.46 E-value=3.5e-13 Score=142.22 Aligned_cols=179 Identities=15% Similarity=0.022 Sum_probs=149.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhc-cchhHHHHHHHHHH
Q 008231 32 WLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAK-LGRYLTVAIFASVT 110 (573)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Grr~~~~~~~~~~ 110 (573)
.+.++.+++..++....++++..++|.|+++.+|++..+.+++.+.+.++..++.++.|+++||+ .|||+.+.++..+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 46778888888888889999999999999988999999999999999999999999999999994 27888888777666
Q ss_pred H-HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhH
Q 008231 111 A-LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM 189 (573)
Q Consensus 111 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r 189 (573)
. ++.+++.+..+ .+.+.+.+..++.|++.+...+...+++.|.+|+++ |
T Consensus 331 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 380 (451)
T 1pw4_A 331 VTIATIVYWMNPA------------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------A 380 (451)
T ss_dssp HHHHHHHTTSCCT------------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------H
T ss_pred HHHHHHHHHHhcc------------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------h
Confidence 5 55555554311 145566677778888888888888899999999988 9
Q ss_pred HHHHHHHHHHHHh-hhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008231 190 IFFFNRFYFAISI-GSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLI 240 (573)
Q Consensus 190 ~~~~~~~~~~~~i-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 240 (573)
++++++++...++ |..++|.+.|++.+..||+..|++.++..+++.+..++
T Consensus 381 g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999887777666555444
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.37 E-value=4.9e-12 Score=132.87 Aligned_cols=167 Identities=13% Similarity=-0.001 Sum_probs=135.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231 32 WLAAGLILGTELSERICAMGISMNLVTY-LVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT 110 (573)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 110 (573)
.+.++..++..++.....+++..+++.| +++.+|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++..+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 3456777777777777888888999999 8888899999999999999999999999999999998 9999999999888
Q ss_pred HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231 111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI 190 (573)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 190 (573)
+++.+++.+.. +... ++..++.|++.+...+...++..|.+|++ ++
T Consensus 336 ~~~~~~~~~~~--------------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~ 381 (438)
T 3o7q_A 336 MALCLISAFAG--------------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK 381 (438)
T ss_dssp HHHHHHHHHCC--------------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred HHHHHHHHHcC--------------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence 88887777652 2223 33346788888888899999988988843 56
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHHHHHH
Q 008231 191 FFFNRFYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGTMVVA 234 (573)
Q Consensus 191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~ 234 (573)
.+.++.. ...+|..++|.+.|++.+..| ++..|++.++..++.
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 6666655 567999999999999999998 999988766554443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.34 E-value=2.5e-12 Score=134.93 Aligned_cols=178 Identities=7% Similarity=-0.042 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---CchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 008231 33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHL---SSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASV 109 (573)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 109 (573)
+..+......+.....++.....+|.|+.+.++. +..+.+...++..+...++.++.|+++||+ |||+++..+..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 3444444444444445555556788888766653 234556777777778888999999999998 999999988888
Q ss_pred HHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhH
Q 008231 110 TALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM 189 (573)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r 189 (573)
.+++..+.++.. +.+.+++..++.+++.+...+....+++|.+|++. |
T Consensus 299 ~~~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~ 346 (417)
T 2cfq_A 299 MSVRIIGSSFAT--------------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S 346 (417)
T ss_dssp HHHHHHHHTTCC--------------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred HHHHHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence 777766665532 33455556666676666666666789999999877 9
Q ss_pred HHHHHH-HHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008231 190 IFFFNR-FYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTP 243 (573)
Q Consensus 190 ~~~~~~-~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 243 (573)
+++.++ ++.+.++|+.++|.++|++.+..|++..|.+.++..+++.+..+...+
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999998 577888999999999999998889988888877776666655444333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.17 E-value=5.7e-11 Score=126.93 Aligned_cols=186 Identities=10% Similarity=-0.054 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH-----HHHH
Q 008231 34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVA-----IFAS 108 (573)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-----~~~~ 108 (573)
..+.+....++....+......++.|+.+.++.+..+.+++.+...+...++.++.|++.||+ |||+... ++..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 344555555666666777778889999998998888888888899999999999999999998 9886544 6666
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHh
Q 008231 109 VTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKA 188 (573)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (573)
+.+++..++.+..... ......+.+.+.+..++.|++.+...+...+++.|.+|++.
T Consensus 363 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------ 419 (491)
T 4aps_A 363 FAGLSFLLMAIPGALY-----------------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------ 419 (491)
T ss_dssp HHHHHHTTTHHHHHHC-----------------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------
T ss_pred HHHHHHHHHHHHHHhc-----------------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------
Confidence 6666665555431000 00000134556677788899999988999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcc
Q 008231 189 MIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPW 244 (573)
Q Consensus 189 r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 244 (573)
|+++.++.+...++|..++|.+.+++.+ .++.+.|.+.++..+++.+..++..++
T Consensus 420 ~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 420 NSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875 467777777666666655555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.03 E-value=8.1e-10 Score=117.84 Aligned_cols=166 Identities=16% Similarity=-0.011 Sum_probs=117.2
Q ss_pred HHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcc
Q 008231 54 MNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDD 133 (573)
Q Consensus 54 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (573)
....+++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.+.++......
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~--------- 366 (491)
T 4gc0_A 297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ--------- 366 (491)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTT---------
T ss_pred HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhcc---------
Confidence 3344556667788888887777788888999999999999998 999999999888887776665432111
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhh
Q 008231 134 YRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVY 213 (573)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~ 213 (573)
.......+....+..+.+ ....+....+.+|.+|.+. |+++.++.+....+|+.+++.+.+.
T Consensus 367 -----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~~i~~~~~p~ 428 (491)
T 4gc0_A 367 -----------APGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLANYFVSWTFPM 428 (491)
T ss_dssp -----------CCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred -----------cchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001112222222222322 2334666789999999999 9999999999999999999888776
Q ss_pred hhc------ccchhHHHHHHHHHHHHHHHHHHhcCccccc
Q 008231 214 VQD------NVGRGWGYGISAGTMVVAAAILLIGTPWYRF 247 (573)
Q Consensus 214 l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 247 (573)
+.+ ..++.++|++.+++++++.++.++..||.+.
T Consensus 429 l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 429 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 643 2345567787777777777776777776543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.89 E-value=3.7e-10 Score=116.11 Aligned_cols=164 Identities=9% Similarity=-0.132 Sum_probs=127.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH-HH
Q 008231 33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASV-TA 111 (573)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~ 111 (573)
|.++......++....++++..++|.|+++.+|.+..+.+.+.+...++..++.++.|+++||+ |++ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4677777777888888888888899999988999999999999999999999999999999998 772 2233222 22
Q ss_pred HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231 112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF 191 (573)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 191 (573)
.+..+..... ....+.+.+++..++.|++.+...+...++..|.+| ++ |++
T Consensus 276 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~ 326 (375)
T 2gfp_A 276 AGLLMWIPDW----------------------FGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGT 326 (375)
T ss_dssp TSSSSSHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHH
T ss_pred HHHHHHHHhh----------------------hccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cch
Confidence 2221111110 001245566677788899999999999999999987 55 999
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHH
Q 008231 192 FFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISA 228 (573)
Q Consensus 192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~ 228 (573)
+.++.+...++|..++|.+.+.+.+..++...+.+.+
T Consensus 327 ~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 327 AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999999999988777887776543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.24 E-value=4.3e-06 Score=89.63 Aligned_cols=136 Identities=15% Similarity=0.118 Sum_probs=98.6
Q ss_pred ccccchhhHHHHHHHHHhhhhhhhhh-hcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhH
Q 008231 373 SGSLSAFLFITILLFTSLNEKVFVPL-ARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFW 451 (573)
Q Consensus 373 ~~~~~~~~~~~~l~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 451 (573)
.+++.+...++.++..++.+++.||+ +||+ .+..+.++..++.++.... +.+.+.
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~-----------~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 111 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKYN-----------TILWLSLIYCVGHAFLAIF-------------EHSVQG 111 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----------HHHHHHHHHHHHHHHHHHT-------------SSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHHHHHHHHh-------------cccHHH
Confidence 45566677777778888888988777 6553 2566777777777666553 114556
Q ss_pred HHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhH
Q 008231 452 LVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGL---FLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNN 528 (573)
Q Consensus 452 lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi---~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~ 528 (573)
+++..++.|++.+...+...+++.|.+|++.|++..+. .+....+|..+++.+.+.+.+.. +| ..
T Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--g~----------~~ 179 (524)
T 2xut_A 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF--GA----------AV 179 (524)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--CH----------HH
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cH----------HH
Confidence 67778899999999999999999999999999876666 88889999999999988776432 22 34
Q ss_pred HHHHHHHHHHHHHHHH
Q 008231 529 FYWLLAVLGLLNFMVF 544 (573)
Q Consensus 529 ~~~~~a~~~~l~~~~~ 544 (573)
.|++.+++.++..+..
T Consensus 180 ~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 180 AFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666665555544433
Done!