Query 008232
Match_columns 573
No_of_seqs 119 out of 145
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 21:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02169 SMC_prok_A chromosom 97.0 0.13 2.8E-06 60.7 23.9 26 504-529 344-369 (1164)
2 TIGR02168 SMC_prok_B chromosom 96.7 0.26 5.6E-06 57.9 23.3 8 379-386 192-199 (1179)
3 TIGR02169 SMC_prok_A chromosom 96.7 0.29 6.3E-06 57.8 23.5 18 516-533 475-492 (1164)
4 PRK09039 hypothetical protein; 96.5 0.28 6.1E-06 52.3 19.4 97 380-476 53-152 (343)
5 KOG1029 Endocytic adaptor prot 96.4 0.046 1E-06 63.3 13.6 114 418-553 349-466 (1118)
6 PRK02224 chromosome segregatio 96.2 0.75 1.6E-05 53.8 22.8 21 374-394 476-496 (880)
7 KOG0980 Actin-binding protein 96.0 1.1 2.4E-05 53.0 22.4 156 369-535 329-484 (980)
8 PRK03918 chromosome segregatio 96.0 1 2.2E-05 52.5 22.2 42 440-481 612-653 (880)
9 PRK11637 AmiB activator; Provi 95.9 1.4 3.1E-05 47.8 21.6 12 472-483 177-188 (428)
10 COG1196 Smc Chromosome segrega 95.9 1.2 2.5E-05 54.5 23.1 42 440-481 807-848 (1163)
11 PRK03918 chromosome segregatio 95.9 1.5 3.4E-05 51.0 23.1 71 407-478 202-276 (880)
12 PRK02224 chromosome segregatio 95.4 1.5 3.2E-05 51.4 20.8 27 366-392 461-487 (880)
13 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.3 0.63 1.4E-05 43.0 14.1 65 461-545 66-130 (132)
14 KOG0933 Structural maintenance 95.2 1.4 2.9E-05 53.1 19.4 181 375-556 743-941 (1174)
15 KOG0963 Transcription factor/C 95.1 4.6 0.0001 46.5 22.5 177 368-549 140-342 (629)
16 PF00261 Tropomyosin: Tropomyo 95.1 4.3 9.4E-05 41.0 21.7 47 414-460 66-112 (237)
17 COG1196 Smc Chromosome segrega 95.1 3.9 8.5E-05 50.1 23.5 148 397-544 757-904 (1163)
18 KOG0250 DNA repair protein RAD 95.0 2.8 6.2E-05 50.8 21.3 155 383-547 294-452 (1074)
19 PF07888 CALCOCO1: Calcium bin 94.8 2.3 5E-05 48.4 19.2 33 506-538 353-385 (546)
20 PF00261 Tropomyosin: Tropomyo 94.7 5.5 0.00012 40.2 20.6 125 426-550 40-181 (237)
21 PF10186 Atg14: UV radiation r 94.5 3 6.6E-05 41.9 17.5 127 406-538 21-147 (302)
22 TIGR00606 rad50 rad50. This fa 94.3 2.4 5.2E-05 52.5 19.3 20 440-459 765-784 (1311)
23 KOG0161 Myosin class II heavy 94.2 5 0.00011 51.7 22.0 181 364-547 829-1029(1930)
24 PF05276 SH3BP5: SH3 domain-bi 94.2 7.8 0.00017 40.0 21.7 159 381-540 22-207 (239)
25 PF05701 WEMBL: Weak chloropla 94.1 7.1 0.00015 44.0 21.2 88 455-549 331-418 (522)
26 PRK11637 AmiB activator; Provi 94.0 11 0.00024 41.0 22.3 31 506-536 222-252 (428)
27 PHA02562 46 endonuclease subun 93.8 11 0.00024 41.7 21.5 10 449-458 257-266 (562)
28 KOG0612 Rho-associated, coiled 93.7 9 0.00019 47.3 21.7 28 265-292 294-321 (1317)
29 TIGR00606 rad50 rad50. This fa 93.7 1.6 3.4E-05 54.0 16.3 36 442-477 746-781 (1311)
30 TIGR01843 type_I_hlyD type I s 93.6 6.4 0.00014 41.4 18.6 26 443-468 199-224 (423)
31 KOG0250 DNA repair protein RAD 93.5 11 0.00023 46.1 21.9 114 437-550 313-427 (1074)
32 PF10481 CENP-F_N: Cenp-F N-te 93.2 0.8 1.7E-05 48.0 10.8 114 365-488 3-136 (307)
33 KOG0980 Actin-binding protein 93.0 13 0.00028 44.6 21.1 152 372-531 357-522 (980)
34 PRK04863 mukB cell division pr 92.9 6.5 0.00014 49.7 19.9 152 402-560 975-1131(1486)
35 PF09726 Macoilin: Transmembra 92.8 18 0.00038 42.6 22.1 111 439-551 544-656 (697)
36 KOG0161 Myosin class II heavy 92.8 6.7 0.00015 50.6 19.8 59 391-449 1618-1676(1930)
37 PF08317 Spc7: Spc7 kinetochor 92.7 7.6 0.00016 41.1 17.5 38 504-541 231-268 (325)
38 KOG0933 Structural maintenance 92.7 4.8 0.0001 48.7 17.2 136 396-532 799-935 (1174)
39 PRK04778 septation ring format 92.5 11 0.00024 42.8 19.5 111 438-548 315-435 (569)
40 PF12718 Tropomyosin_1: Tropom 92.4 6.9 0.00015 37.1 15.0 117 414-548 2-118 (143)
41 PF05911 DUF869: Plant protein 92.2 6.1 0.00013 46.9 17.4 103 443-554 606-710 (769)
42 PF13514 AAA_27: AAA domain 92.1 19 0.0004 44.1 22.0 33 365-397 718-750 (1111)
43 PRK04863 mukB cell division pr 92.1 12 0.00026 47.5 20.5 22 375-396 316-337 (1486)
44 PF12128 DUF3584: Protein of u 91.8 20 0.00044 44.3 21.9 160 378-544 619-798 (1201)
45 KOG0612 Rho-associated, coiled 91.7 11 0.00024 46.6 18.9 23 456-478 538-560 (1317)
46 TIGR01843 type_I_hlyD type I s 91.7 7 0.00015 41.1 15.8 25 524-548 246-270 (423)
47 TIGR02894 DNA_bind_RsfA transc 91.6 1.8 3.9E-05 42.3 10.3 93 460-552 52-146 (161)
48 COG1340 Uncharacterized archae 91.4 22 0.00048 37.9 22.6 168 380-549 69-246 (294)
49 PF13514 AAA_27: AAA domain 91.3 14 0.00031 45.1 19.7 107 364-471 142-273 (1111)
50 COG2433 Uncharacterized conser 91.2 3.9 8.6E-05 47.1 14.0 152 380-541 342-512 (652)
51 PF03962 Mnd1: Mnd1 family; I 91.2 2.3 5E-05 42.0 10.9 98 451-556 66-167 (188)
52 PF13166 AAA_13: AAA domain 91.1 33 0.00072 39.3 22.5 108 440-550 363-471 (712)
53 KOG0979 Structural maintenance 90.9 9.9 0.00021 46.1 17.3 66 472-537 294-359 (1072)
54 PF08317 Spc7: Spc7 kinetochor 90.7 20 0.00042 38.0 18.0 14 390-403 137-150 (325)
55 PF05667 DUF812: Protein of un 90.7 8.7 0.00019 44.3 16.3 83 438-520 385-478 (594)
56 PF12128 DUF3584: Protein of u 90.6 12 0.00026 46.3 18.4 22 108-129 172-193 (1201)
57 KOG4674 Uncharacterized conser 90.6 34 0.00073 44.3 22.2 117 421-538 695-819 (1822)
58 TIGR02680 conserved hypothetic 90.6 22 0.00048 44.7 20.8 98 441-544 284-381 (1353)
59 PF15070 GOLGA2L5: Putative go 90.5 26 0.00056 40.8 20.0 117 411-543 35-169 (617)
60 COG0419 SbcC ATPase involved i 90.1 49 0.0011 39.7 22.7 101 438-538 310-417 (908)
61 KOG0978 E3 ubiquitin ligase in 90.1 46 0.00099 39.4 21.4 90 448-537 525-614 (698)
62 PHA02562 46 endonuclease subun 90.1 35 0.00075 37.8 21.2 36 503-538 365-400 (562)
63 KOG0964 Structural maintenance 90.0 10 0.00022 45.9 16.4 41 447-487 258-298 (1200)
64 PF00038 Filament: Intermediat 90.0 25 0.00055 36.2 20.6 126 414-544 171-296 (312)
65 PF00769 ERM: Ezrin/radixin/mo 89.9 15 0.00034 37.6 15.9 110 438-547 10-126 (246)
66 PRK11281 hypothetical protein; 89.8 8 0.00017 47.6 15.9 86 394-480 83-168 (1113)
67 KOG0996 Structural maintenance 89.7 28 0.0006 43.2 19.7 18 372-389 805-822 (1293)
68 PF04012 PspA_IM30: PspA/IM30 89.4 8.2 0.00018 38.1 13.1 104 441-546 31-134 (221)
69 PF04111 APG6: Autophagy prote 89.2 6.2 0.00013 41.9 12.8 117 413-537 17-133 (314)
70 PF10174 Cast: RIM-binding pro 89.0 21 0.00045 42.7 17.9 129 417-545 564-706 (775)
71 PF15397 DUF4618: Domain of un 88.8 34 0.00073 35.9 19.0 61 504-571 187-247 (258)
72 TIGR02977 phageshock_pspA phag 88.8 17 0.00037 36.3 15.0 108 440-547 31-143 (219)
73 KOG0996 Structural maintenance 88.7 35 0.00077 42.3 19.6 43 439-481 913-955 (1293)
74 COG4942 Membrane-bound metallo 88.7 6.4 0.00014 43.6 12.8 106 373-486 154-263 (420)
75 PF11559 ADIP: Afadin- and alp 88.6 13 0.00028 34.8 13.2 76 437-512 49-127 (151)
76 PF09730 BicD: Microtubule-ass 88.4 11 0.00023 44.6 14.9 113 426-538 20-142 (717)
77 PF00038 Filament: Intermediat 88.4 33 0.00072 35.3 19.2 37 511-547 210-246 (312)
78 KOG0995 Centromere-associated 88.3 9.6 0.00021 43.7 14.1 100 416-533 253-362 (581)
79 PF04156 IncA: IncA protein; 88.3 18 0.00039 34.8 14.3 80 441-534 110-189 (191)
80 COG0419 SbcC ATPase involved i 88.2 66 0.0014 38.6 22.4 31 514-544 699-729 (908)
81 KOG2412 Nuclear-export-signal 88.2 8.6 0.00019 43.9 13.5 108 436-548 178-286 (591)
82 PF05600 DUF773: Protein of un 88.2 15 0.00032 41.6 15.6 103 437-552 397-499 (507)
83 PRK09039 hypothetical protein; 88.1 9.1 0.0002 41.1 13.3 103 439-541 73-182 (343)
84 PF06248 Zw10: Centromere/kine 87.9 31 0.00067 39.3 18.1 173 371-558 12-185 (593)
85 smart00787 Spc7 Spc7 kinetocho 87.7 39 0.00085 36.1 17.5 100 440-539 151-261 (312)
86 KOG4673 Transcription factor T 87.7 51 0.0011 39.1 19.3 164 367-537 574-759 (961)
87 PF05911 DUF869: Plant protein 87.5 5.3 0.00012 47.3 12.0 115 422-536 596-752 (769)
88 PF05701 WEMBL: Weak chloropla 87.3 58 0.0013 36.9 22.0 19 407-425 244-262 (522)
89 TIGR02971 heterocyst_DevB ABC 87.3 21 0.00046 36.9 15.1 45 442-486 99-146 (327)
90 PRK04778 septation ring format 86.9 62 0.0014 36.9 20.2 165 376-547 168-371 (569)
91 KOG0982 Centrosomal protein Nu 86.8 34 0.00073 38.4 16.7 77 452-535 295-371 (502)
92 PF05667 DUF812: Protein of un 86.3 23 0.0005 41.0 16.0 87 439-525 341-434 (594)
93 PRK10884 SH3 domain-containing 86.2 8.5 0.00018 38.8 11.1 37 508-547 137-173 (206)
94 COG4942 Membrane-bound metallo 86.1 43 0.00093 37.4 17.2 73 380-470 38-110 (420)
95 cd07627 BAR_Vps5p The Bin/Amph 85.7 40 0.00088 33.5 20.9 109 438-550 47-169 (216)
96 PF09726 Macoilin: Transmembra 85.6 67 0.0014 38.0 19.4 152 371-539 416-581 (697)
97 KOG4674 Uncharacterized conser 85.6 79 0.0017 41.2 21.0 160 383-549 564-749 (1822)
98 COG1842 PspA Phage shock prote 85.4 19 0.00041 36.8 13.3 99 440-540 31-129 (225)
99 PF10186 Atg14: UV radiation r 85.4 43 0.00094 33.7 17.8 83 440-529 70-152 (302)
100 PF15070 GOLGA2L5: Putative go 85.2 83 0.0018 36.8 19.7 88 440-538 122-209 (617)
101 PF07888 CALCOCO1: Calcium bin 85.2 80 0.0017 36.5 22.2 55 417-475 180-234 (546)
102 TIGR02680 conserved hypothetic 85.1 73 0.0016 40.3 20.6 39 439-477 792-830 (1353)
103 KOG4403 Cell surface glycoprot 84.9 12 0.00027 41.8 12.3 31 519-549 392-422 (575)
104 PF04012 PspA_IM30: PspA/IM30 84.9 19 0.0004 35.6 12.7 106 443-550 26-131 (221)
105 PF15066 CAGE1: Cancer-associa 84.9 76 0.0016 36.1 18.3 118 397-520 357-502 (527)
106 PF09731 Mitofilin: Mitochondr 84.6 78 0.0017 35.8 21.8 37 367-403 245-281 (582)
107 TIGR01005 eps_transp_fam exopo 84.5 32 0.0007 40.0 16.3 67 393-467 196-264 (754)
108 PRK01156 chromosome segregatio 84.4 54 0.0012 39.0 18.3 23 509-531 701-723 (895)
109 PF02845 CUE: CUE domain; Int 84.0 2.1 4.5E-05 32.2 4.3 35 170-204 3-37 (42)
110 KOG4643 Uncharacterized coiled 83.9 20 0.00044 43.7 14.3 165 375-550 179-348 (1195)
111 COG1579 Zn-ribbon protein, pos 83.2 61 0.0013 33.7 19.1 31 471-501 92-122 (239)
112 smart00546 CUE Domain that may 83.2 2.4 5.1E-05 31.9 4.4 36 169-204 3-38 (43)
113 TIGR03185 DNA_S_dndD DNA sulfu 83.0 19 0.00041 41.5 13.5 17 367-383 163-179 (650)
114 TIGR01000 bacteriocin_acc bact 82.9 68 0.0015 35.3 17.2 33 511-543 285-317 (457)
115 PF13904 DUF4207: Domain of un 82.9 36 0.00078 35.3 14.3 50 498-549 179-228 (264)
116 PRK10246 exonuclease subunit S 82.8 1.3E+02 0.0028 37.1 23.4 30 498-527 368-397 (1047)
117 PRK10698 phage shock protein P 82.8 34 0.00073 34.7 13.7 109 440-548 31-144 (222)
118 PF14197 Cep57_CLD_2: Centroso 82.5 5.5 0.00012 33.7 6.8 52 399-478 13-64 (69)
119 PRK10246 exonuclease subunit S 82.4 1.3E+02 0.0029 37.0 20.9 56 414-469 691-746 (1047)
120 PRK12704 phosphodiesterase; Pr 82.2 96 0.0021 35.4 18.3 71 439-509 81-151 (520)
121 PF05615 THOC7: Tho complex su 82.2 32 0.0007 31.8 12.4 97 434-544 13-115 (139)
122 PF01576 Myosin_tail_1: Myosin 81.5 0.47 1E-05 56.3 0.0 168 375-549 660-831 (859)
123 TIGR00618 sbcc exonuclease Sbc 81.4 1.4E+02 0.003 36.5 22.6 125 351-476 132-282 (1042)
124 PF13166 AAA_13: AAA domain 80.5 1.2E+02 0.0025 35.0 20.2 36 446-481 362-397 (712)
125 PF15369 KIAA1328: Uncharacter 80.4 11 0.00023 40.7 9.5 94 405-544 8-102 (328)
126 KOG1029 Endocytic adaptor prot 80.2 1.5E+02 0.0032 36.0 19.5 40 441-480 409-449 (1118)
127 TIGR03794 NHPM_micro_HlyD NHPM 80.0 77 0.0017 34.3 16.2 25 524-548 227-251 (421)
128 PF06818 Fez1: Fez1; InterPro 79.9 74 0.0016 32.4 16.6 144 378-535 15-184 (202)
129 PRK10929 putative mechanosensi 79.9 85 0.0018 39.2 18.0 92 436-528 147-240 (1109)
130 PF07058 Myosin_HC-like: Myosi 79.8 43 0.00093 36.2 13.6 89 462-550 67-155 (351)
131 PF06705 SF-assemblin: SF-asse 79.8 74 0.0016 32.3 17.5 129 373-513 92-220 (247)
132 KOG0018 Structural maintenance 79.7 24 0.00053 43.2 13.0 80 454-547 676-755 (1141)
133 PRK09841 cryptic autophosphory 79.6 89 0.0019 36.7 17.5 149 382-552 258-412 (726)
134 KOG2891 Surface glycoprotein [ 79.5 48 0.001 35.6 13.7 45 495-539 392-436 (445)
135 KOG2891 Surface glycoprotein [ 79.4 90 0.002 33.6 15.7 29 411-439 284-316 (445)
136 PF02841 GBP_C: Guanylate-bind 79.3 85 0.0018 32.8 21.2 131 370-500 93-257 (297)
137 KOG0964 Structural maintenance 78.9 1.5E+02 0.0032 36.7 18.8 141 400-547 263-448 (1200)
138 KOG0976 Rho/Rac1-interacting s 78.3 73 0.0016 38.5 15.9 130 414-548 50-204 (1265)
139 PF14988 DUF4515: Domain of un 78.3 80 0.0017 31.9 18.7 22 369-390 36-57 (206)
140 TIGR00618 sbcc exonuclease Sbc 77.9 1.8E+02 0.0039 35.7 23.3 49 498-546 367-415 (1042)
141 PF04111 APG6: Autophagy prote 77.4 31 0.00067 36.7 12.0 24 457-480 46-69 (314)
142 PF09325 Vps5: Vps5 C terminal 77.3 76 0.0016 31.1 18.7 155 372-550 23-189 (236)
143 KOG0946 ER-Golgi vesicle-tethe 76.9 40 0.00087 40.5 13.4 53 494-547 896-948 (970)
144 PF14662 CCDC155: Coiled-coil 76.6 91 0.002 31.6 19.1 142 375-536 38-191 (193)
145 TIGR00634 recN DNA repair prot 76.1 1.2E+02 0.0027 34.4 17.0 59 491-549 327-390 (563)
146 PF10473 CENP-F_leu_zip: Leuci 75.9 77 0.0017 30.4 13.7 45 440-484 3-47 (140)
147 KOG0994 Extracellular matrix g 75.7 2.3E+02 0.0049 36.0 19.2 41 379-419 1593-1633(1758)
148 PRK11519 tyrosine kinase; Prov 75.7 1E+02 0.0022 36.2 16.5 45 387-434 252-300 (719)
149 PF05557 MAD: Mitotic checkpoi 75.3 0.91 2E-05 52.6 0.0 89 395-483 118-207 (722)
150 KOG4657 Uncharacterized conser 75.1 59 0.0013 33.8 12.6 89 437-546 62-150 (246)
151 TIGR01000 bacteriocin_acc bact 74.8 1.3E+02 0.0028 33.2 16.3 19 509-527 242-260 (457)
152 PRK10884 SH3 domain-containing 74.7 32 0.0007 34.7 10.7 28 435-462 88-115 (206)
153 COG1579 Zn-ribbon protein, pos 74.7 1.1E+02 0.0024 31.8 17.3 100 440-539 45-146 (239)
154 smart00787 Spc7 Spc7 kinetocho 74.6 89 0.0019 33.5 14.4 9 410-418 202-210 (312)
155 smart00502 BBC B-Box C-termina 74.3 57 0.0012 28.2 14.0 67 443-509 3-69 (127)
156 PF15619 Lebercilin: Ciliary p 74.3 99 0.0022 30.9 20.0 92 440-545 82-185 (194)
157 PF15456 Uds1: Up-regulated Du 73.8 9.7 0.00021 35.6 6.3 43 421-464 21-66 (124)
158 PF12808 Mto2_bdg: Micro-tubul 73.8 7.5 0.00016 31.5 4.8 43 439-481 3-49 (52)
159 COG4026 Uncharacterized protei 73.8 33 0.00071 35.7 10.5 85 464-553 108-206 (290)
160 PF07246 Phlebovirus_NSM: Phle 73.8 13 0.00028 39.1 7.7 91 369-472 151-241 (264)
161 PF10481 CENP-F_N: Cenp-F N-te 73.5 94 0.002 33.2 13.9 118 389-537 5-122 (307)
162 TIGR01010 BexC_CtrB_KpsE polys 73.5 1.3E+02 0.0028 32.0 17.1 141 389-550 168-318 (362)
163 KOG0976 Rho/Rac1-interacting s 73.5 1.9E+02 0.004 35.4 17.4 132 372-532 255-408 (1265)
164 PF06160 EzrA: Septation ring 73.2 1.8E+02 0.0039 33.4 17.7 142 376-524 164-334 (560)
165 PF05557 MAD: Mitotic checkpoi 72.9 14 0.0003 43.2 8.7 62 460-533 565-629 (722)
166 PF10174 Cast: RIM-binding pro 72.3 2.3E+02 0.005 34.2 20.4 111 438-548 348-482 (775)
167 TIGR03319 YmdA_YtgF conserved 72.2 1.8E+02 0.004 33.1 19.9 67 439-505 75-141 (514)
168 PRK10476 multidrug resistance 72.2 64 0.0014 33.9 12.7 19 466-484 143-161 (346)
169 TIGR01005 eps_transp_fam exopo 71.9 2.1E+02 0.0045 33.6 21.2 113 439-551 294-417 (754)
170 TIGR02231 conserved hypothetic 71.5 42 0.00091 37.6 11.8 35 441-475 72-106 (525)
171 PRK11519 tyrosine kinase; Prov 71.5 1.4E+02 0.003 35.2 16.3 144 389-551 265-411 (719)
172 TIGR00998 8a0101 efflux pump m 71.3 45 0.00098 34.4 11.2 37 447-483 115-154 (334)
173 PF12325 TMF_TATA_bd: TATA ele 71.0 81 0.0017 29.5 11.6 77 453-533 15-91 (120)
174 PF05266 DUF724: Protein of un 70.3 49 0.0011 33.0 10.7 85 400-487 98-185 (190)
175 TIGR02977 phageshock_pspA phag 70.2 1.2E+02 0.0026 30.4 13.5 106 445-550 29-139 (219)
176 KOG0240 Kinesin (SMY1 subfamil 70.2 1.1E+02 0.0023 35.7 14.4 109 438-553 489-601 (607)
177 KOG0994 Extracellular matrix g 70.2 3.1E+02 0.0067 34.9 19.0 37 438-474 1596-1632(1758)
178 PRK10361 DNA recombination pro 69.8 2.1E+02 0.0045 32.7 18.0 53 441-493 54-106 (475)
179 KOG2991 Splicing regulator [RN 69.6 1.6E+02 0.0035 31.4 18.1 128 399-540 162-308 (330)
180 KOG4673 Transcription factor T 69.5 2.6E+02 0.0055 33.7 17.3 20 525-544 772-791 (961)
181 PF05529 Bap31: B-cell recepto 69.0 32 0.0007 33.4 9.0 67 464-543 121-187 (192)
182 PF01576 Myosin_tail_1: Myosin 69.0 1.6 3.4E-05 52.0 0.0 166 375-550 576-755 (859)
183 KOG0977 Nuclear envelope prote 68.5 2E+02 0.0044 33.4 16.2 42 440-481 148-189 (546)
184 PF15254 CCDC14: Coiled-coil d 68.2 1.1E+02 0.0024 36.8 14.3 55 410-479 342-405 (861)
185 PF05278 PEARLI-4: Arabidopsis 68.1 92 0.002 33.0 12.5 102 438-551 147-248 (269)
186 PF07106 TBPIP: Tat binding pr 68.0 38 0.00082 32.4 9.1 46 434-479 66-111 (169)
187 PRK00409 recombination and DNA 68.0 1.2E+02 0.0025 36.4 14.9 40 162-205 245-284 (782)
188 KOG0804 Cytoplasmic Zn-finger 67.7 78 0.0017 35.9 12.4 37 498-534 405-445 (493)
189 PF09730 BicD: Microtubule-ass 67.7 82 0.0018 37.5 13.3 98 411-539 372-469 (717)
190 PF05700 BCAS2: Breast carcino 67.5 30 0.00065 34.8 8.7 71 407-480 145-215 (221)
191 PRK09841 cryptic autophosphory 67.4 1.7E+02 0.0037 34.4 15.9 36 510-545 346-381 (726)
192 PF10146 zf-C4H2: Zinc finger- 67.3 43 0.00093 34.4 9.8 78 398-475 8-95 (230)
193 PF09787 Golgin_A5: Golgin sub 67.3 2.2E+02 0.0048 32.2 20.3 102 450-551 277-398 (511)
194 KOG0971 Microtubule-associated 67.3 3.2E+02 0.0069 33.9 19.6 146 399-549 273-435 (1243)
195 KOG0977 Nuclear envelope prote 67.0 2.3E+02 0.0049 33.0 16.2 166 375-550 115-329 (546)
196 KOG0978 E3 ubiquitin ligase in 66.5 2.9E+02 0.0062 33.1 20.9 180 364-549 384-584 (698)
197 TIGR03752 conj_TIGR03752 integ 65.9 50 0.0011 37.4 10.7 76 454-535 66-141 (472)
198 TIGR03185 DNA_S_dndD DNA sulfu 65.8 2.6E+02 0.0057 32.4 21.7 11 542-552 506-516 (650)
199 KOG0243 Kinesin-like protein [ 65.6 2.4E+02 0.0051 35.2 16.7 14 396-411 396-409 (1041)
200 PF02050 FliJ: Flagellar FliJ 65.1 86 0.0019 26.6 14.0 37 445-481 3-39 (123)
201 PRK03598 putative efflux pump 64.8 92 0.002 32.5 12.0 25 516-540 177-201 (331)
202 PF14362 DUF4407: Domain of un 64.5 1.8E+02 0.0039 30.1 15.1 66 407-481 96-162 (301)
203 PF15619 Lebercilin: Ciliary p 64.4 1.6E+02 0.0035 29.5 16.4 21 511-531 172-192 (194)
204 PF15294 Leu_zip: Leucine zipp 64.1 47 0.001 35.2 9.6 40 506-548 211-250 (278)
205 PTZ00121 MAEBL; Provisional 63.7 4.5E+02 0.0098 34.4 19.4 28 376-403 1598-1625(2084)
206 PF10234 Cluap1: Clusterin-ass 63.5 1.1E+02 0.0023 32.4 12.0 62 417-478 146-207 (267)
207 PF11802 CENP-K: Centromere-as 63.5 1.2E+02 0.0026 32.2 12.3 22 373-394 52-73 (268)
208 PRK10698 phage shock protein P 63.4 1.7E+02 0.0036 29.7 13.1 92 459-550 43-139 (222)
209 KOG0249 LAR-interacting protei 63.2 2.1E+02 0.0046 34.4 15.2 144 379-531 107-258 (916)
210 PF08581 Tup_N: Tup N-terminal 63.2 33 0.00071 29.9 6.9 53 427-480 23-76 (79)
211 PF00769 ERM: Ezrin/radixin/mo 63.2 1.9E+02 0.0041 29.8 14.1 101 440-540 26-126 (246)
212 COG1842 PspA Phage shock prote 63.1 1.5E+02 0.0033 30.4 12.8 35 509-543 112-146 (225)
213 PRK10476 multidrug resistance 63.0 1E+02 0.0022 32.3 12.0 22 406-427 87-108 (346)
214 PF08172 CASP_C: CASP C termin 62.4 61 0.0013 33.7 9.9 107 442-554 1-137 (248)
215 PRK10869 recombination and rep 62.4 2.9E+02 0.0062 31.7 18.2 64 487-550 318-386 (553)
216 PF05262 Borrelia_P83: Borreli 62.4 2.9E+02 0.0062 31.7 17.2 10 518-527 325-334 (489)
217 TIGR02231 conserved hypothetic 62.3 42 0.00091 37.6 9.5 29 440-468 78-106 (525)
218 TIGR03495 phage_LysB phage lys 62.2 85 0.0018 30.0 10.1 78 414-509 21-98 (135)
219 PRK00106 hypothetical protein; 62.2 3E+02 0.0065 31.9 21.9 71 441-511 98-168 (535)
220 PF05483 SCP-1: Synaptonemal c 62.1 3.4E+02 0.0075 32.5 20.9 120 414-533 407-564 (786)
221 PTZ00266 NIMA-related protein 61.1 93 0.002 38.5 12.5 10 364-373 425-434 (1021)
222 PF07798 DUF1640: Protein of u 61.0 1.3E+02 0.0029 29.1 11.5 25 463-487 133-157 (177)
223 KOG4807 F-actin binding protei 60.7 2.9E+02 0.0063 31.2 16.8 19 376-394 294-312 (593)
224 TIGR03319 YmdA_YtgF conserved 60.6 2.9E+02 0.0062 31.6 15.6 16 434-449 56-71 (514)
225 PF11932 DUF3450: Protein of u 59.9 1.4E+02 0.0031 30.3 12.0 40 505-544 65-104 (251)
226 PF08703 PLC-beta_C: PLC-beta 59.7 2E+02 0.0043 29.0 13.2 17 480-496 103-119 (185)
227 PF06637 PV-1: PV-1 protein (P 59.6 1E+02 0.0022 34.4 11.2 35 461-499 292-326 (442)
228 PF14712 Snapin_Pallidin: Snap 59.6 1.1E+02 0.0025 26.1 9.8 79 451-530 11-91 (92)
229 COG4487 Uncharacterized protei 58.4 3.2E+02 0.007 31.0 19.1 47 375-421 28-76 (438)
230 KOG0804 Cytoplasmic Zn-finger 58.3 1.8E+02 0.004 33.1 13.1 47 510-556 403-453 (493)
231 cd07623 BAR_SNX1_2 The Bin/Amp 58.3 2.1E+02 0.0045 28.8 21.0 65 486-550 106-175 (224)
232 KOG0247 Kinesin-like protein [ 58.3 1.3E+02 0.0028 36.1 12.5 89 384-472 513-606 (809)
233 PF05278 PEARLI-4: Arabidopsis 57.9 1.7E+02 0.0038 31.0 12.3 45 486-530 218-262 (269)
234 PF03961 DUF342: Protein of un 56.6 54 0.0012 36.2 8.9 33 504-536 376-408 (451)
235 TIGR03007 pepcterm_ChnLen poly 56.5 3.1E+02 0.0068 30.2 18.3 42 439-480 253-294 (498)
236 PF09304 Cortex-I_coil: Cortex 55.9 1.7E+02 0.0038 27.1 12.7 69 401-483 12-80 (107)
237 PF09755 DUF2046: Uncharacteri 55.2 3.1E+02 0.0067 29.8 16.7 110 384-493 124-261 (310)
238 cd00632 Prefoldin_beta Prefold 55.2 1.2E+02 0.0026 26.9 9.3 87 377-481 3-97 (105)
239 TIGR03017 EpsF chain length de 55.0 3.1E+02 0.0066 29.7 21.5 30 391-420 171-200 (444)
240 PF04156 IncA: IncA protein; 54.9 2E+02 0.0044 27.6 14.4 28 440-467 95-122 (191)
241 TIGR00634 recN DNA repair prot 54.9 3.7E+02 0.0081 30.6 18.7 20 518-537 347-366 (563)
242 PLN02718 Probable galacturonos 54.9 1.3E+02 0.0027 35.4 11.6 80 406-485 185-267 (603)
243 TIGR01541 tape_meas_lam_C phag 54.8 3.1E+02 0.0067 29.7 16.0 38 377-417 5-42 (332)
244 PRK13729 conjugal transfer pil 54.7 18 0.00039 40.8 4.9 21 462-482 105-125 (475)
245 PF14817 HAUS5: HAUS augmin-li 54.0 1.5E+02 0.0033 34.8 12.3 97 458-555 83-179 (632)
246 PRK10093 primosomal replicatio 53.5 1.9E+02 0.0041 28.8 11.2 88 452-542 61-168 (171)
247 PRK11578 macrolide transporter 53.2 1.1E+02 0.0024 32.5 10.3 74 407-484 115-188 (370)
248 PF05262 Borrelia_P83: Borreli 52.8 3E+02 0.0065 31.5 14.0 16 401-416 230-245 (489)
249 PF06156 DUF972: Protein of un 52.8 35 0.00076 31.2 5.7 47 440-486 8-54 (107)
250 PF04849 HAP1_N: HAP1 N-termin 52.7 1.6E+02 0.0035 31.8 11.3 93 455-550 161-253 (306)
251 PF11932 DUF3450: Protein of u 52.2 2.7E+02 0.0059 28.3 14.6 35 470-504 133-167 (251)
252 PF04568 IATP: Mitochondrial A 52.0 43 0.00093 30.5 6.0 34 494-533 66-99 (100)
253 cd07673 F-BAR_FCHO2 The F-BAR 51.7 2.6E+02 0.0057 29.1 12.6 61 500-561 193-258 (269)
254 PF05483 SCP-1: Synaptonemal c 51.6 5.1E+02 0.011 31.2 19.8 19 507-525 633-651 (786)
255 PF14915 CCDC144C: CCDC144C pr 51.6 3.5E+02 0.0075 29.3 15.5 40 411-450 5-48 (305)
256 PF12795 MscS_porin: Mechanose 51.5 1.8E+02 0.0039 29.4 11.1 64 489-552 78-141 (240)
257 PF15397 DUF4618: Domain of un 51.2 3.2E+02 0.007 28.9 16.9 39 380-418 63-108 (258)
258 PF04977 DivIC: Septum formati 50.6 52 0.0011 26.9 5.9 48 501-548 15-62 (80)
259 PF07798 DUF1640: Protein of u 49.9 2.3E+02 0.005 27.5 11.2 89 462-550 52-155 (177)
260 PF05377 FlaC_arch: Flagella a 49.8 27 0.00058 28.8 3.9 34 441-481 1-34 (55)
261 PF10883 DUF2681: Protein of u 49.6 60 0.0013 29.0 6.4 37 509-545 29-65 (87)
262 PF04642 DUF601: Protein of un 49.5 1.7E+02 0.0036 31.1 10.5 120 397-542 160-284 (311)
263 PF07926 TPR_MLP1_2: TPR/MLP1/ 49.4 2.2E+02 0.0048 26.4 13.0 29 519-547 68-96 (132)
264 KOG1937 Uncharacterized conser 48.7 4.7E+02 0.01 30.0 19.3 150 379-547 344-518 (521)
265 PRK10636 putative ABC transpor 48.4 50 0.0011 38.1 7.3 52 500-551 567-625 (638)
266 PF12777 MT: Microtubule-bindi 48.2 48 0.0011 35.4 6.8 42 438-479 219-260 (344)
267 TIGR02449 conserved hypothetic 48.1 1.4E+02 0.0031 25.3 8.1 53 454-534 7-59 (65)
268 PF14257 DUF4349: Domain of un 48.1 54 0.0012 33.3 6.9 54 412-470 139-192 (262)
269 COG1566 EmrA Multidrug resista 47.7 1.6E+02 0.0034 32.3 10.5 22 485-506 150-171 (352)
270 PF14932 HAUS-augmin3: HAUS au 47.4 61 0.0013 33.3 7.2 124 372-510 67-190 (256)
271 PRK03598 putative efflux pump 47.4 1.5E+02 0.0032 30.9 10.1 43 504-548 160-202 (331)
272 KOG4360 Uncharacterized coiled 47.1 2.1E+02 0.0044 33.2 11.5 63 365-427 190-262 (596)
273 PLN02910 polygalacturonate 4-a 47.0 73 0.0016 37.4 8.2 72 414-485 225-299 (657)
274 PLN02769 Probable galacturonos 46.8 68 0.0015 37.6 8.0 76 407-482 203-281 (629)
275 PRK05771 V-type ATP synthase s 46.7 1.1E+02 0.0024 35.3 9.8 179 366-550 13-241 (646)
276 PRK00409 recombination and DNA 46.6 3.5E+02 0.0075 32.5 14.0 127 399-532 489-622 (782)
277 PF09787 Golgin_A5: Golgin sub 46.6 4.8E+02 0.01 29.6 15.3 23 440-462 162-184 (511)
278 PF10211 Ax_dynein_light: Axon 46.3 2.8E+02 0.0061 27.5 11.3 38 386-423 101-138 (189)
279 KOG4572 Predicted DNA-binding 46.1 4.4E+02 0.0096 32.5 14.2 53 464-532 1055-1107(1424)
280 TIGR03007 pepcterm_ChnLen poly 46.0 4.5E+02 0.0098 29.0 20.8 100 438-541 280-386 (498)
281 PF10158 LOH1CR12: Tumour supp 45.9 1.8E+02 0.004 27.5 9.4 60 485-544 37-97 (131)
282 KOG2077 JNK/SAPK-associated pr 45.3 90 0.0019 36.5 8.4 39 441-482 312-350 (832)
283 PF09755 DUF2046: Uncharacteri 45.1 4.4E+02 0.0095 28.7 14.4 15 501-515 82-96 (310)
284 PF01486 K-box: K-box region; 45.1 90 0.002 27.4 6.9 69 409-477 16-98 (100)
285 PF09744 Jnk-SapK_ap_N: JNK_SA 44.9 3.1E+02 0.0067 26.8 11.1 101 403-506 41-148 (158)
286 PF07851 TMPIT: TMPIT-like pro 44.5 98 0.0021 33.7 8.3 40 422-461 4-46 (330)
287 TIGR03017 EpsF chain length de 44.4 4.4E+02 0.0096 28.5 20.7 41 439-479 260-300 (444)
288 PRK13169 DNA replication intia 44.1 40 0.00086 31.2 4.6 40 440-479 8-47 (110)
289 PLN02320 seryl-tRNA synthetase 44.0 1.9E+02 0.0041 33.2 10.9 20 439-458 92-111 (502)
290 PF10168 Nup88: Nuclear pore c 43.7 6.5E+02 0.014 30.2 16.0 13 265-277 369-381 (717)
291 TIGR01069 mutS2 MutS2 family p 43.3 3.8E+02 0.0082 32.2 13.6 91 399-496 484-578 (771)
292 TIGR00414 serS seryl-tRNA synt 43.3 2E+02 0.0044 31.8 10.7 47 414-460 4-50 (418)
293 PF14817 HAUS5: HAUS augmin-li 43.2 1.9E+02 0.0042 34.0 11.0 23 426-448 322-344 (632)
294 PRK12704 phosphodiesterase; Pr 43.1 5.7E+02 0.012 29.4 15.8 16 434-449 62-77 (520)
295 PF08614 ATG16: Autophagy prot 43.1 2.2E+02 0.0048 27.9 10.0 42 507-548 141-182 (194)
296 PF06005 DUF904: Protein of un 42.9 2.2E+02 0.0047 24.4 9.5 30 452-481 9-38 (72)
297 PF10212 TTKRSYEDQ: Predicted 42.8 6E+02 0.013 29.5 16.7 30 505-534 450-479 (518)
298 KOG1962 B-cell receptor-associ 42.6 1.5E+02 0.0034 30.4 8.9 78 398-478 130-210 (216)
299 TIGR03545 conserved hypothetic 42.5 2.2E+02 0.0047 33.0 11.1 17 276-292 81-97 (555)
300 TIGR03752 conj_TIGR03752 integ 42.5 1.8E+02 0.0038 33.2 10.2 23 369-391 55-77 (472)
301 PRK11147 ABC transporter ATPas 41.4 69 0.0015 36.8 7.1 52 500-551 572-629 (635)
302 PF05791 Bacillus_HBL: Bacillu 41.3 3.4E+02 0.0074 26.6 10.9 39 369-407 44-82 (184)
303 PF15458 NTR2: Nineteen comple 40.9 1.9E+02 0.004 30.0 9.5 93 438-547 147-252 (254)
304 COG3206 GumC Uncharacterized p 40.8 5.4E+02 0.012 28.4 14.4 51 440-490 292-342 (458)
305 TIGR01010 BexC_CtrB_KpsE polys 40.5 4.8E+02 0.01 27.7 14.3 23 459-481 212-234 (362)
306 KOG0239 Kinesin (KAR3 subfamil 40.2 7.1E+02 0.015 29.7 17.3 33 465-497 245-277 (670)
307 KOG0962 DNA repair protein RAD 39.8 9.5E+02 0.021 31.0 19.2 27 369-395 774-800 (1294)
308 PF01608 I_LWEQ: I/LWEQ domain 39.5 1.5E+02 0.0032 29.0 7.9 77 436-532 69-147 (152)
309 cd04776 HTH_GnyR Helix-Turn-He 39.4 1.2E+02 0.0026 27.6 7.0 40 508-547 78-117 (118)
310 PF12925 APP_E2: E2 domain of 39.1 1E+02 0.0022 31.2 6.9 64 423-486 24-106 (193)
311 KOG3119 Basic region leucine z 38.7 1.4E+02 0.003 31.3 8.2 60 463-543 196-255 (269)
312 PF13094 CENP-Q: CENP-Q, a CEN 38.7 1.9E+02 0.0042 27.4 8.6 47 504-550 35-81 (160)
313 PF11559 ADIP: Afadin- and alp 38.6 3.3E+02 0.0072 25.4 14.4 91 440-530 38-128 (151)
314 PRK11448 hsdR type I restricti 38.4 1.4E+02 0.0031 37.3 9.4 36 504-539 178-213 (1123)
315 PRK11578 macrolide transporter 37.8 3E+02 0.0064 29.2 10.7 22 442-463 108-129 (370)
316 PF05659 RPW8: Arabidopsis bro 37.7 78 0.0017 30.3 5.7 78 482-559 23-103 (147)
317 TIGR00019 prfA peptide chain r 37.6 1.8E+02 0.0039 32.0 9.1 80 374-459 8-94 (360)
318 PF05335 DUF745: Protein of un 37.6 4.4E+02 0.0095 26.5 15.2 120 370-496 64-186 (188)
319 PF05008 V-SNARE: Vesicle tran 37.6 2.1E+02 0.0046 23.7 7.7 26 510-535 54-79 (79)
320 PF05335 DUF745: Protein of un 37.5 4.4E+02 0.0096 26.5 16.5 70 398-481 49-122 (188)
321 PRK05892 nucleoside diphosphat 37.1 69 0.0015 30.9 5.3 47 513-559 14-75 (158)
322 PRK15178 Vi polysaccharide exp 36.9 5.4E+02 0.012 29.2 12.8 89 390-483 241-338 (434)
323 COG3883 Uncharacterized protei 36.9 2.3E+02 0.0049 30.1 9.3 38 501-538 50-87 (265)
324 PF07111 HCR: Alpha helical co 36.9 8.3E+02 0.018 29.5 19.4 43 370-417 63-106 (739)
325 PF03962 Mnd1: Mnd1 family; I 36.8 2.5E+02 0.0053 27.9 9.2 20 515-534 108-127 (188)
326 PF04912 Dynamitin: Dynamitin 36.6 4.1E+02 0.0089 28.9 11.7 70 380-468 295-364 (388)
327 PRK06342 transcription elongat 36.3 54 0.0012 31.8 4.5 47 513-559 37-85 (160)
328 PF14193 DUF4315: Domain of un 36.3 73 0.0016 28.1 4.8 32 513-544 4-35 (83)
329 KOG0163 Myosin class VI heavy 36.1 9.2E+02 0.02 29.8 15.8 61 463-536 946-1006(1259)
330 TIGR01069 mutS2 MutS2 family p 36.0 8.5E+02 0.018 29.4 15.8 20 162-181 240-259 (771)
331 TIGR02473 flagell_FliJ flagell 36.0 3.3E+02 0.0071 24.5 11.4 36 444-479 17-52 (141)
332 KOG0239 Kinesin (KAR3 subfamil 35.8 8.3E+02 0.018 29.1 16.6 84 448-541 224-307 (670)
333 PF12718 Tropomyosin_1: Tropom 35.7 3.9E+02 0.0085 25.4 17.1 64 466-536 78-141 (143)
334 PRK13729 conjugal transfer pil 35.6 95 0.0021 35.3 6.8 41 411-458 82-122 (475)
335 PF14357 DUF4404: Domain of un 35.6 1E+02 0.0023 26.9 5.7 52 411-469 3-65 (85)
336 PRK05431 seryl-tRNA synthetase 35.6 3.3E+02 0.0071 30.3 10.9 26 525-550 74-99 (425)
337 COG5283 Phage-related tail pro 35.4 1.1E+03 0.023 30.3 16.8 38 440-477 99-143 (1213)
338 PF14197 Cep57_CLD_2: Centroso 35.1 2.7E+02 0.006 23.6 8.0 42 445-486 3-44 (69)
339 PF14555 UBA_4: UBA-like domai 35.1 61 0.0013 24.5 3.7 34 171-205 3-36 (43)
340 PF07445 priB_priC: Primosomal 35.0 4.4E+02 0.0096 25.8 11.0 55 457-511 66-120 (173)
341 KOG3467 Histone H4 [Chromatin 34.7 35 0.00077 30.7 2.7 62 68-136 11-73 (103)
342 PTZ00266 NIMA-related protein 34.6 3.6E+02 0.0079 33.6 11.9 15 164-178 225-239 (1021)
343 PF05622 HOOK: HOOK protein; 34.5 13 0.00028 43.3 0.0 70 403-472 306-381 (713)
344 TIGR03545 conserved hypothetic 34.5 2E+02 0.0044 33.3 9.3 33 504-536 213-245 (555)
345 TIGR01541 tape_meas_lam_C phag 34.5 6.3E+02 0.014 27.4 15.1 34 515-548 117-150 (332)
346 smart00338 BRLZ basic region l 34.4 2.5E+02 0.0054 22.7 7.7 49 485-539 14-62 (65)
347 COG2433 Uncharacterized conser 34.3 4.1E+02 0.0089 31.5 11.5 35 440-474 474-508 (652)
348 PF12761 End3: Actin cytoskele 34.3 2.7E+02 0.0058 28.3 9.0 27 504-530 168-194 (195)
349 PRK15422 septal ring assembly 34.2 1.7E+02 0.0037 25.9 6.6 41 511-551 19-73 (79)
350 KOG1821 Uncharacterized conser 34.1 63 0.0014 36.2 5.0 94 429-530 554-653 (662)
351 KOG3156 Uncharacterized membra 33.8 1E+02 0.0022 31.8 6.0 24 464-487 177-200 (220)
352 KOG0243 Kinesin-like protein [ 33.7 1.1E+03 0.023 29.8 15.9 94 360-467 425-524 (1041)
353 KOG0962 DNA repair protein RAD 33.5 1.2E+03 0.025 30.2 19.2 18 501-518 904-921 (1294)
354 COG1340 Uncharacterized archae 33.4 6.5E+02 0.014 27.2 21.2 18 464-481 134-151 (294)
355 PF09304 Cortex-I_coil: Cortex 33.4 4E+02 0.0088 24.8 11.2 74 466-547 14-88 (107)
356 TIGR02971 heterocyst_DevB ABC 33.0 5.7E+02 0.012 26.4 15.7 18 442-459 106-123 (327)
357 KOG0963 Transcription factor/C 32.7 9.1E+02 0.02 28.7 18.0 157 375-545 123-306 (629)
358 PF02994 Transposase_22: L1 tr 32.7 1.4E+02 0.003 32.6 7.3 47 503-549 144-190 (370)
359 PF05529 Bap31: B-cell recepto 32.3 2.3E+02 0.0049 27.6 8.1 6 413-418 133-138 (192)
360 COG4026 Uncharacterized protei 32.2 1.2E+02 0.0027 31.6 6.4 52 413-475 132-184 (290)
361 PF10168 Nup88: Nuclear pore c 32.2 9.6E+02 0.021 28.8 21.3 30 509-538 684-713 (717)
362 PF04912 Dynamitin: Dynamitin 32.2 6.9E+02 0.015 27.2 16.9 81 376-468 242-323 (388)
363 PF05622 HOOK: HOOK protein; 31.8 16 0.00034 42.7 0.0 21 113-133 23-43 (713)
364 PLN02678 seryl-tRNA synthetase 31.5 4.2E+02 0.0092 29.9 11.0 31 438-468 31-61 (448)
365 TIGR00570 cdk7 CDK-activating 31.4 5.2E+02 0.011 28.1 11.1 56 370-426 101-160 (309)
366 PF02403 Seryl_tRNA_N: Seryl-t 31.2 3.6E+02 0.0079 23.6 9.8 53 414-467 4-56 (108)
367 PF14932 HAUS-augmin3: HAUS au 31.2 4E+02 0.0086 27.5 10.0 67 412-481 75-141 (256)
368 PF15035 Rootletin: Ciliary ro 31.2 5.4E+02 0.012 25.6 13.2 90 448-538 61-155 (182)
369 cd07675 F-BAR_FNBP1L The F-BAR 31.1 6.4E+02 0.014 26.4 17.1 47 385-431 75-122 (252)
370 PF10018 Med4: Vitamin-D-recep 31.0 1.3E+02 0.0028 29.5 6.3 30 424-453 31-63 (188)
371 PRK05689 fliJ flagellar biosyn 31.0 4.3E+02 0.0093 24.4 10.7 100 439-539 1-100 (147)
372 PF13815 Dzip-like_N: Iguana/D 31.0 2.6E+02 0.0056 25.5 7.7 49 485-533 68-117 (118)
373 KOG0971 Microtubule-associated 31.0 1.2E+03 0.025 29.4 19.8 157 373-535 269-442 (1243)
374 PF08614 ATG16: Autophagy prot 30.9 1.2E+02 0.0025 29.9 5.9 74 461-534 67-140 (194)
375 KOG0979 Structural maintenance 30.6 1.2E+03 0.026 29.4 22.2 65 485-549 293-357 (1072)
376 PF11570 E2R135: Coiled-coil r 30.5 5.1E+02 0.011 25.1 11.6 94 440-547 29-135 (136)
377 PF10498 IFT57: Intra-flagella 30.5 7.6E+02 0.017 27.1 14.1 121 418-548 219-352 (359)
378 PRK10869 recombination and rep 30.3 8.9E+02 0.019 27.9 16.2 17 377-393 161-177 (553)
379 PRK05431 seryl-tRNA synthetase 30.1 4.5E+02 0.0098 29.2 10.9 55 414-470 4-58 (425)
380 PF04859 DUF641: Plant protein 30.1 2.6E+02 0.0057 26.7 7.8 42 505-546 89-130 (131)
381 PF08397 IMD: IRSp53/MIM homol 30.1 5.7E+02 0.012 25.5 18.9 147 373-537 58-209 (219)
382 PF06632 XRCC4: DNA double-str 29.9 5.1E+02 0.011 28.3 10.9 25 519-543 189-213 (342)
383 PRK10865 protein disaggregatio 29.8 5.6E+02 0.012 31.1 12.3 22 462-483 411-432 (857)
384 PF10211 Ax_dynein_light: Axon 29.8 5.7E+02 0.012 25.4 11.0 23 513-535 166-188 (189)
385 KOG4438 Centromere-associated 29.7 4.7E+02 0.01 29.7 10.7 96 370-475 303-398 (446)
386 KOG0018 Structural maintenance 29.7 1.3E+03 0.027 29.4 19.6 92 437-535 804-895 (1141)
387 cd07652 F-BAR_Rgd1 The F-BAR ( 29.2 6.3E+02 0.014 25.7 11.5 21 438-458 116-136 (234)
388 PF06160 EzrA: Septation ring 29.1 9.3E+02 0.02 27.7 19.6 107 438-544 311-427 (560)
389 PF04576 Zein-binding: Zein-bi 28.7 2.9E+02 0.0064 25.1 7.4 23 455-477 71-93 (94)
390 cd07647 F-BAR_PSTPIP The F-BAR 28.7 6.3E+02 0.014 25.5 13.5 12 385-396 83-94 (239)
391 KOG2264 Exostosin EXT1L [Signa 28.4 3.4E+02 0.0075 32.1 9.6 43 437-479 76-118 (907)
392 PF10212 TTKRSYEDQ: Predicted 28.3 3.5E+02 0.0075 31.3 9.6 88 446-537 419-514 (518)
393 TIGR01730 RND_mfp RND family e 28.1 2.2E+02 0.0048 28.7 7.5 16 468-483 123-138 (322)
394 KOG4715 SWI/SNF-related matrix 28.0 3.3E+02 0.0071 29.9 8.9 69 455-523 229-306 (410)
395 PF07889 DUF1664: Protein of u 27.6 5.4E+02 0.012 24.4 10.9 21 444-464 40-60 (126)
396 PF06476 DUF1090: Protein of u 27.6 4.3E+02 0.0092 24.5 8.6 67 467-539 23-92 (115)
397 KOG3478 Prefoldin subunit 6, K 27.5 5.3E+02 0.012 24.4 12.7 42 494-535 74-115 (120)
398 KOG2606 OTU (ovarian tumor)-li 27.5 4.3E+02 0.0094 28.6 9.6 113 372-490 15-138 (302)
399 TIGR01730 RND_mfp RND family e 27.4 2.2E+02 0.0048 28.7 7.4 11 527-537 119-129 (322)
400 PRK06568 F0F1 ATP synthase sub 27.3 3.7E+02 0.008 26.1 8.5 76 415-490 38-122 (154)
401 PF12795 MscS_porin: Mechanose 26.9 6.7E+02 0.014 25.3 13.7 36 509-544 149-184 (240)
402 PF09728 Taxilin: Myosin-like 26.6 8.1E+02 0.018 26.2 17.7 104 371-480 153-270 (309)
403 PF14662 CCDC155: Coiled-coil 26.2 7.1E+02 0.015 25.4 13.3 27 503-529 102-128 (193)
404 PF13747 DUF4164: Domain of un 26.2 4.6E+02 0.01 23.2 8.6 50 457-506 35-84 (89)
405 PF09607 BrkDBD: Brinker DNA-b 26.1 43 0.00092 27.9 1.6 40 481-520 11-57 (58)
406 PRK07720 fliJ flagellar biosyn 25.8 5.4E+02 0.012 23.8 11.3 78 446-538 22-99 (146)
407 PRK06991 ferredoxin; Provision 25.7 1.4E+02 0.003 31.5 5.6 33 390-427 142-174 (270)
408 KOG4643 Uncharacterized coiled 25.7 1.5E+03 0.032 28.9 18.6 25 77-102 4-28 (1195)
409 PRK03947 prefoldin subunit alp 25.7 5.3E+02 0.012 23.7 12.1 35 504-538 102-136 (140)
410 cd07596 BAR_SNX The Bin/Amphip 25.6 5.8E+02 0.013 24.1 20.8 166 372-558 3-186 (218)
411 PF09802 Sec66: Preprotein tra 25.6 7.2E+02 0.016 25.2 13.6 111 364-496 40-154 (190)
412 PF12777 MT: Microtubule-bindi 25.5 4.3E+02 0.0093 28.3 9.4 13 507-519 295-307 (344)
413 PLN02678 seryl-tRNA synthetase 25.4 5.6E+02 0.012 29.0 10.6 24 526-549 80-103 (448)
414 PF05700 BCAS2: Breast carcino 25.3 5.6E+02 0.012 25.8 9.7 39 494-532 180-218 (221)
415 PLN02939 transferase, transfer 25.3 7.8E+02 0.017 30.8 12.4 65 466-541 231-295 (977)
416 PRK09973 putative outer membra 25.2 1.2E+02 0.0027 27.0 4.4 40 448-487 25-64 (85)
417 COG4694 Uncharacterized protei 25.1 4.5E+02 0.0098 31.1 9.8 67 408-486 425-491 (758)
418 PRK00578 prfB peptide chain re 24.9 2.4E+02 0.0052 31.1 7.5 52 376-427 26-81 (367)
419 PF06810 Phage_GP20: Phage min 24.7 4.3E+02 0.0094 25.5 8.4 45 440-484 20-67 (155)
420 KOG1574 Predicted cell growth/ 24.7 1E+03 0.022 26.7 12.0 27 365-391 147-173 (375)
421 PF09789 DUF2353: Uncharacteri 24.6 9.4E+02 0.02 26.2 15.9 23 374-396 31-54 (319)
422 PF09763 Sec3_C: Exocyst compl 24.6 4.2E+02 0.009 31.1 9.8 91 424-535 7-97 (701)
423 PRK10803 tol-pal system protei 24.5 3.2E+02 0.007 28.3 8.1 42 506-547 57-98 (263)
424 PRK00591 prfA peptide chain re 24.4 4.8E+02 0.01 28.8 9.6 31 373-403 6-36 (359)
425 PF02388 FemAB: FemAB family; 24.4 2.1E+02 0.0045 31.4 6.9 24 523-546 272-295 (406)
426 PF09738 DUF2051: Double stran 24.4 8.1E+02 0.018 26.4 11.1 83 382-479 79-165 (302)
427 TIGR01554 major_cap_HK97 phage 24.4 1.7E+02 0.0037 31.3 6.2 18 377-394 3-20 (378)
428 cd03190 GST_C_ECM4_like GST_C 24.4 1.8E+02 0.0038 26.7 5.6 25 383-407 2-26 (142)
429 KOG0240 Kinesin (SMY1 subfamil 24.2 1.2E+03 0.027 27.5 14.3 26 523-548 516-541 (607)
430 PF10805 DUF2730: Protein of u 24.2 1.7E+02 0.0037 26.4 5.3 40 438-477 47-88 (106)
431 PF11363 DUF3164: Protein of u 24.0 1.2E+02 0.0027 30.4 4.7 33 370-402 21-53 (195)
432 PF13496 DUF4120: Domain of un 24.0 52 0.0011 29.6 1.9 12 499-510 24-35 (95)
433 PF09789 DUF2353: Uncharacteri 24.0 8.8E+02 0.019 26.5 11.3 74 461-534 9-103 (319)
434 KOG1003 Actin filament-coating 23.8 8.1E+02 0.018 25.2 20.4 157 375-537 6-199 (205)
435 PF13591 MerR_2: MerR HTH fami 23.8 85 0.0018 27.0 3.1 19 373-391 63-81 (84)
436 PF06005 DUF904: Protein of un 23.8 4.7E+02 0.01 22.4 9.7 51 501-551 16-66 (72)
437 KOG2273 Membrane coat complex 23.7 1.1E+03 0.023 26.5 14.3 44 373-417 363-406 (503)
438 PRK10865 protein disaggregatio 23.6 5.9E+02 0.013 30.9 11.0 15 364-378 336-350 (857)
439 TIGR03794 NHPM_micro_HlyD NHPM 23.5 9.7E+02 0.021 26.0 17.1 26 516-541 226-251 (421)
440 PF07851 TMPIT: TMPIT-like pro 23.5 8.6E+02 0.019 26.7 11.2 79 462-546 12-90 (330)
441 PF02601 Exonuc_VII_L: Exonucl 23.5 8.5E+02 0.019 25.4 15.0 124 375-534 145-271 (319)
442 PF03114 BAR: BAR domain; Int 23.4 6.2E+02 0.014 23.7 16.3 90 373-479 92-190 (229)
443 PF06818 Fez1: Fez1; InterPro 23.2 8.3E+02 0.018 25.1 14.8 134 406-546 25-185 (202)
444 TIGR00020 prfB peptide chain r 23.1 3.4E+02 0.0074 30.0 8.2 28 376-403 26-53 (364)
445 PF14523 Syntaxin_2: Syntaxin- 23.1 4.8E+02 0.01 22.3 11.2 61 468-535 26-96 (102)
446 PF09766 FimP: Fms-interacting 23.1 9.9E+02 0.021 26.0 16.4 129 388-547 16-152 (355)
447 KOG4593 Mitotic checkpoint pro 23.0 1.4E+03 0.03 27.7 20.3 151 377-544 105-278 (716)
448 PF05837 CENP-H: Centromere pr 22.9 5.7E+02 0.012 23.1 10.6 48 456-503 5-52 (106)
449 PF07083 DUF1351: Protein of u 22.9 8E+02 0.017 24.8 12.3 124 410-546 47-177 (215)
450 COG5019 CDC3 Septin family pro 22.7 9E+02 0.019 27.0 11.2 36 503-541 331-366 (373)
451 PF04949 Transcrip_act: Transc 22.6 7.6E+02 0.017 24.5 10.9 93 418-521 45-137 (159)
452 KOG2751 Beclin-like protein [S 22.5 8.9E+02 0.019 27.6 11.2 50 495-548 218-267 (447)
453 PF12958 DUF3847: Protein of u 22.5 1.6E+02 0.0035 26.2 4.6 32 513-544 4-35 (86)
454 PF06102 DUF947: Domain of unk 22.4 5E+02 0.011 25.4 8.4 12 442-453 65-76 (168)
455 PF08826 DMPK_coil: DMPK coile 22.2 2.5E+02 0.0054 23.5 5.4 40 442-481 20-59 (61)
456 PF08657 DASH_Spc34: DASH comp 22.2 3.2E+02 0.0069 28.7 7.5 26 461-486 194-219 (259)
457 KOG4364 Chromatin assembly fac 21.9 1.2E+03 0.026 28.3 12.4 20 532-551 360-379 (811)
458 smart00721 BAR BAR domain. 21.9 7.4E+02 0.016 24.0 13.2 60 488-547 130-193 (239)
459 KOG4739 Uncharacterized protei 21.8 5.8E+02 0.012 26.7 9.1 34 418-452 112-145 (233)
460 KOG0288 WD40 repeat protein Ti 21.8 1.2E+03 0.027 26.6 12.9 117 370-490 7-131 (459)
461 KOG1962 B-cell receptor-associ 21.7 9.1E+02 0.02 25.0 11.6 30 504-533 180-209 (216)
462 KOG1666 V-SNARE [Intracellular 21.7 2.8E+02 0.006 28.8 6.7 51 504-554 4-66 (220)
463 TIGR00219 mreC rod shape-deter 21.7 1.5E+02 0.0032 31.2 5.0 17 462-478 67-83 (283)
464 TIGR01461 greB transcription e 21.7 1.4E+02 0.003 28.8 4.4 44 513-556 11-70 (156)
465 PF01540 Lipoprotein_7: Adhesi 21.7 4.3E+02 0.0093 28.5 8.2 76 367-458 189-266 (353)
466 PRK11281 hypothetical protein; 21.4 1.7E+03 0.038 28.2 20.1 35 510-544 285-319 (1113)
467 KOG3054 Uncharacterized conser 21.3 6.7E+02 0.015 26.8 9.4 72 480-551 109-183 (299)
468 PF04350 PilO: Pilus assembly 21.3 60 0.0013 29.4 1.8 44 508-552 4-47 (144)
469 PF03961 DUF342: Protein of un 21.3 5.1E+02 0.011 28.7 9.3 26 105-130 30-56 (451)
470 PF05266 DUF724: Protein of un 21.2 8.4E+02 0.018 24.4 10.3 16 518-533 160-175 (190)
471 PF15112 DUF4559: Domain of un 20.9 3.6E+02 0.0079 29.2 7.6 92 455-546 209-303 (307)
472 TIGR03495 phage_LysB phage lys 20.7 7.6E+02 0.016 23.7 9.6 37 450-486 22-58 (135)
473 TIGR02209 ftsL_broad cell divi 20.7 1.7E+02 0.0037 24.5 4.4 32 447-478 24-55 (85)
474 PRK10929 putative mechanosensi 20.6 1.8E+03 0.039 28.1 21.5 31 512-542 267-297 (1109)
475 COG0216 PrfA Protein chain rel 20.4 8.4E+02 0.018 27.1 10.3 41 495-535 55-101 (363)
476 PF02403 Seryl_tRNA_N: Seryl-t 20.3 5.9E+02 0.013 22.3 10.9 68 484-551 24-101 (108)
477 PF09036 Bcr-Abl_Oligo: Bcr-Ab 20.3 1.6E+02 0.0034 25.9 4.0 21 515-535 31-51 (79)
478 TIGR02473 flagell_FliJ flagell 20.3 6.3E+02 0.014 22.6 14.5 19 463-481 70-88 (141)
479 PF12252 SidE: Dot/Icm substra 20.3 1.4E+03 0.031 29.2 13.0 143 400-542 1048-1222(1439)
480 PF09849 DUF2076: Uncharacteri 20.2 1.1E+02 0.0024 31.9 3.6 29 508-536 45-74 (247)
481 PRK06231 F0F1 ATP synthase sub 20.1 8.9E+02 0.019 24.3 12.6 108 415-525 82-190 (205)
482 KOG2726 Mitochondrial polypept 20.0 7.8E+02 0.017 27.6 10.1 42 509-551 99-140 (386)
No 1
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.02 E-value=0.13 Score=60.72 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKEL 529 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l 529 (573)
.+..++.+...+++++...+.++..+
T Consensus 344 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 369 (1164)
T TIGR02169 344 EIEEERKRRDKLTEEYAELKEELEDL 369 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333333
No 2
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.75 E-value=0.26 Score=57.90 Aligned_cols=8 Identities=25% Similarity=0.401 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 008232 379 LHQIKDLE 386 (573)
Q Consensus 379 v~rv~eLq 386 (573)
-.|+++|+
T Consensus 192 ~~ql~~L~ 199 (1179)
T TIGR02168 192 EDILNELE 199 (1179)
T ss_pred HHHHHHHH
Confidence 33333333
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.71 E-value=0.29 Score=57.81 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008232 516 QEEIANEKEKIKELQQCL 533 (573)
Q Consensus 516 QEEla~eK~Kl~~l~qel 533 (573)
+++|..-+.++..++.++
T Consensus 475 ~~~l~~l~~~l~~l~~~~ 492 (1164)
T TIGR02169 475 KEEYDRVEKELSKLQREL 492 (1164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 4
>PRK09039 hypothetical protein; Validated
Probab=96.47 E-value=0.28 Score=52.30 Aligned_cols=97 Identities=21% Similarity=0.185 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhh
Q 008232 380 HQIKDLERQVKERK---EWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQV 456 (573)
Q Consensus 380 ~rv~eLq~qlkewt---dWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~Ql 456 (573)
..+.+|+.|+.+-. .--+++--+...+|..-.++|..++.+|++.+..-.++......-.-|+..++.+|.......
T Consensus 53 ~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~ 132 (343)
T PRK09039 53 SALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVS 132 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 44455555554432 223344455556666666777778888887777655554333344578888899999999999
Q ss_pred hhhhHHHHHHhhhhHHHHHH
Q 008232 457 DRANAAVRRLETENAEIRAE 476 (573)
Q Consensus 457 drAna~vrrLE~ena~lr~E 476 (573)
..++..|.+|..+++.||++
T Consensus 133 se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999988
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.046 Score=63.33 Aligned_cols=114 Identities=26% Similarity=0.209 Sum_probs=77.8
Q ss_pred HhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHH----HHHHHHhhhhhhhhHHHHHH
Q 008232 418 RMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEI----RAEMEASKLSAAESVTTCLE 493 (573)
Q Consensus 418 R~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~l----r~EmEAaKL~A~ES~~sc~e 493 (573)
++||||.++-.+|+|.-| +|+-.|+|..|.+- |.||++..|= +.+|||||- =+|
T Consensus 349 qkEreE~ekkererqEqE---rk~qlElekqLerQ-----------ReiE~qrEEerkkeie~rEaar~--------ElE 406 (1118)
T KOG1029|consen 349 QKEREEEEKKERERQEQE---RKAQLELEKQLERQ-----------REIERQREEERKKEIERREAARE--------ELE 406 (1118)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH--------HHH
Confidence 678888887777776544 78888888766542 3444443333 234555542 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhcccc
Q 008232 494 VAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLICLFPW 553 (573)
Q Consensus 494 ~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~ 553 (573)
--++-.----|.+-+--||..=||+|--++.|.++|+++|.-.+...+|++.|++.+---
T Consensus 407 kqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~ 466 (1118)
T KOG1029|consen 407 KQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVD 466 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheec
Confidence 222222333455666678899999999999999999999999999999999998765433
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=96.23 E-value=0.75 Score=53.75 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008232 374 IVVTMLHQIKDLERQVKERKE 394 (573)
Q Consensus 374 mil~Lv~rv~eLq~qlkewtd 394 (573)
.+-++-.++.+|+.++.+++.
T Consensus 476 ~~~~~~~~~~~le~~l~~~~~ 496 (880)
T PRK02224 476 RVEELEAELEDLEEEVEEVEE 496 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777887777765
No 7
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.04 E-value=1.1 Score=53.02 Aligned_cols=156 Identities=21% Similarity=0.248 Sum_probs=120.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHH
Q 008232 369 DQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENA 448 (573)
Q Consensus 369 D~KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnA 448 (573)
|.++..|.-|.+.+..|..++---++=|+-.+-|...+|.- |-+|-+|++|+.. +.+||.- +|-+-+--
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~-------le~~~~e~q~~~q--e~~~e~e--qLr~elaq 397 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLA-------LEGELQEQQREAQ--ENREEQE--QLRNELAQ 397 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHH--HHHHHHH--HHHHHHHH
Confidence 99999999999999999999988888888888888777654 4455555555432 1233332 77787888
Q ss_pred HHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 449 LRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKE 528 (573)
Q Consensus 449 l~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~ 528 (573)
+....+|+++|+..|...|.++......-+.-|--=++=..-.+++++|=....|++.+=+.-.....+++..--.+|.+
T Consensus 398 l~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~ 477 (980)
T KOG0980|consen 398 LLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEE 477 (980)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999888888888888877778888888888888888888877777666666666666666666
Q ss_pred HHHHHHH
Q 008232 529 LQQCLAR 535 (573)
Q Consensus 529 l~qel~q 535 (573)
++.+..+
T Consensus 478 ~~~~~~~ 484 (980)
T KOG0980|consen 478 LQRAAGR 484 (980)
T ss_pred HHHHHHH
Confidence 6666555
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=96.00 E-value=1 Score=52.53 Aligned_cols=42 Identities=29% Similarity=0.399 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
.++..++..+.....+++..+..+..|+.+.++|+.+++..+
T Consensus 612 ~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~ 653 (880)
T PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE 653 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555566666666666777777777766666553
No 9
>PRK11637 AmiB activator; Provisional
Probab=95.92 E-value=1.4 Score=47.81 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=4.6
Q ss_pred HHHHHHHHhhhh
Q 008232 472 EIRAEMEASKLS 483 (573)
Q Consensus 472 ~lr~EmEAaKL~ 483 (573)
..+.+.+..|-.
T Consensus 177 ~~~~~L~~~k~~ 188 (428)
T PRK11637 177 QTREELAAQKAE 188 (428)
T ss_pred HHHHHHHHHHHH
Confidence 333344433333
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.92 E-value=1.2 Score=54.49 Aligned_cols=42 Identities=21% Similarity=0.416 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
.++..++..+.+...++++.......++.+..++..++.+-+
T Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~ 848 (1163)
T COG1196 807 RRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE 848 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444444444444444444444444333
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=95.87 E-value=1.5 Score=51.00 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=36.7
Q ss_pred hhhcHHHHHHHHhhHHHHHHhhhhc----ccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHH
Q 008232 407 LSNDLTELKMLRMEREETQRLKKGK----QTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (573)
Q Consensus 407 L~kd~~ELk~LR~Ekee~~rlkKeK----q~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmE 478 (573)
++.-..+++.++++.++.+...+.. +.| +...+++.++++.+.....++......+.+++.+..++..+.+
T Consensus 202 ~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l-~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~ 276 (880)
T PRK03918 202 LEEVLREINEISSELPELREELEKLEKEVKEL-EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE 276 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444322221 122 2345556666666666666666666556666665555554443
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=95.43 E-value=1.5 Score=51.35 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=15.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008232 366 ITDDQKDEIVVTMLHQIKDLERQVKER 392 (573)
Q Consensus 366 vp~D~KdEmil~Lv~rv~eLq~qlkew 392 (573)
+..+.+.+++-++...++++..++.+-
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~l 487 (880)
T PRK02224 461 VEGSPHVETIEEDRERVEELEAELEDL 487 (880)
T ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 344445566666667777666555543
No 13
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.33 E-value=0.63 Score=43.05 Aligned_cols=65 Identities=28% Similarity=0.465 Sum_probs=45.2
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 008232 461 AAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQ 540 (573)
Q Consensus 461 a~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q 540 (573)
.....+..+++.++.+.++|+-.-.++ -.+|+.||..|+.||..-+.++..|. .|-+=+.
T Consensus 66 ~e~~~~~~~~~~l~~~~~~a~~~l~~~-----------------e~sw~~qk~~le~e~~~~~~r~~dL~---~QN~lLh 125 (132)
T PF07926_consen 66 EELQELQQEINELKAEAESAKAELEES-----------------EASWEEQKEQLEKELSELEQRIEDLN---EQNKLLH 125 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 334445555566666666555443322 34799999999999999999999998 4566667
Q ss_pred Hhhhh
Q 008232 541 KETEV 545 (573)
Q Consensus 541 ~q~E~ 545 (573)
+|||.
T Consensus 126 ~QlE~ 130 (132)
T PF07926_consen 126 DQLES 130 (132)
T ss_pred HHHhh
Confidence 77763
No 14
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.25 E-value=1.4 Score=53.07 Aligned_cols=181 Identities=16% Similarity=0.285 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhH--HHHHHhhhhcccchhhHH-------------
Q 008232 375 VVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMER--EETQRLKKGKQTLEDTTM------------- 439 (573)
Q Consensus 375 il~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ek--ee~~rlkKeKq~lEe~T~------------- 439 (573)
+-.+...+.|++.|+++ ++=+..++++.-..|-++..+-+.=|.-+ |-...++.-||.+|+++.
T Consensus 743 ~~~~~e~v~e~~~~Ike-~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~ 821 (1174)
T KOG0933|consen 743 LKELLEEVEESEQQIKE-KERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQ 821 (1174)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777776 45567777777766666655544433211 111223344455555532
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEl 519 (573)
--..+|+.++++..+|+..-+.....|+.|+..+++...++...-.++-+..-+..++-.-+=+.+-.-....-+.+.|+
T Consensus 822 lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~ 901 (1174)
T KOG0933|consen 822 LEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEK 901 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHh
Confidence 22578999999999999999999999999999999888888777666666555555555555555544455555677788
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHhhhhhhhhc---cccccc
Q 008232 520 ANEKEKIKELQQCLARIQQDQKETEVRLICL---FPWFST 556 (573)
Q Consensus 520 a~eK~Kl~~l~qel~qak~~q~q~E~~~~~~---~~~~~~ 556 (573)
+.-+-++..|..++...+.-.+....+...| |+|+..
T Consensus 902 ~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ 941 (1174)
T KOG0933|consen 902 SDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGD 941 (1174)
T ss_pred hcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhH
Confidence 8888888888888888777777666665554 788773
No 15
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.13 E-value=4.6 Score=46.52 Aligned_cols=177 Identities=18% Similarity=0.209 Sum_probs=106.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccch----------hh
Q 008232 368 DDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLE----------DT 437 (573)
Q Consensus 368 ~D~KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lE----------e~ 437 (573)
...++.=|..|.+++.+++.++.+..+ +.|--.=..++.+.+|-..+=+ ++.+-+++--+.+| +.
T Consensus 140 ~k~qq~~v~~l~e~l~k~~~~~~~~ie---~~a~~~e~~~~q~~~e~e~~L~--~~~~~~~~q~~~le~ki~~lq~a~~~ 214 (629)
T KOG0963|consen 140 LKTQQVTVRNLKERLRKLEQLLEIFIE---NAANETEEKLEQEWAEREAGLK--DEEQNLQEQLEELEKKISSLQSAIED 214 (629)
T ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677788888888888888777655 0111111112222221111111 11111111112222 22
Q ss_pred HHhhHHHHHHH-----------HHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhh-----hhHHHHHHHHHHHHHH
Q 008232 438 TMKRLSEMENA-----------LRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA-----ESVTTCLEVAKREKKC 501 (573)
Q Consensus 438 T~KrLsEmEnA-----------l~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~-----ES~~sc~e~~kkekk~ 501 (573)
|-+.|.+.++. +.=.-..|++||..+.-||.|++.||-+..-++=+.. ...+.-+-+-.+|..-
T Consensus 215 t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i 294 (629)
T KOG0963|consen 215 TQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEI 294 (629)
T ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHH
Confidence 44455555554 2223457899999999999999999999876653322 1122222223356555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhh
Q 008232 502 LKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLIC 549 (573)
Q Consensus 502 lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~ 549 (573)
..=.-..+.-++-|++|+...+.-|..|.+++.......++++-+.+-
T Consensus 295 ~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 295 AQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555666777788999999999999999999999998888888877664
No 16
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.09 E-value=4.3 Score=40.96 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=17.5
Q ss_pred HHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhh
Q 008232 414 LKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRAN 460 (573)
Q Consensus 414 Lk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAn 460 (573)
|..+.+..++.+|..|....-....-.||..+|..|..|....+.|.
T Consensus 66 L~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e 112 (237)
T PF00261_consen 66 LEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAE 112 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333222222222333333333333333333333
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.07 E-value=3.9 Score=50.11 Aligned_cols=148 Identities=21% Similarity=0.242 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHH
Q 008232 397 HQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAE 476 (573)
Q Consensus 397 ~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~E 476 (573)
++++...-..+......+..|..+.++....+...+.--+.....+.+.+..+.....+++.-.....+|+.+++.++.+
T Consensus 757 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~ 836 (1163)
T COG1196 757 QERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE 836 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555544443333333344556666777777777777777777788888888888888
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 477 MEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 477 mEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
+.-.+..-.+......++-.+.......+..-+.++..|.++|..-+.+...+.+++..+.....+++
T Consensus 837 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~ 904 (1163)
T COG1196 837 IEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK 904 (1163)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777766666666666666666666666666666666666666666666666655555444444
No 18
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.00 E-value=2.8 Score=50.76 Aligned_cols=155 Identities=19% Similarity=0.271 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccch---hhHHhhHHHHHHHHHhhhhhhhhh
Q 008232 383 KDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLE---DTTMKRLSEMENALRKASGQVDRA 459 (573)
Q Consensus 383 ~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lE---e~T~KrLsEmEnAl~kas~QldrA 459 (573)
+|=...+++.++|.++|+=-+..+|..=.+.+..++-|-+...+ |-+.+= +.-+.+..+.+-.++.+..++++.
T Consensus 294 qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~---Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~ 370 (1074)
T KOG0250|consen 294 QEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDE---EIEEARKDLDDLRREVNDLKEEIREIENSIRKL 370 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344577788888888888888888887777777766543222 111111 223344567777777888888888
Q ss_pred hHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 460 NAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCL-KRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 460 na~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~l-kkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
...+.+|+-.++.++++- -.+.++=++=...+-+.| +.....|.|...|.+|+-..++++...++++..++.
T Consensus 371 k~~~d~l~k~I~~~~~~~-------~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~ 443 (1074)
T KOG0250|consen 371 KKEVDRLEKQIADLEKQT-------NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEG 443 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH-------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 888888888888777765 233333222222222222 234445557777777777777777777777766655
Q ss_pred HhHhhhhhh
Q 008232 539 DQKETEVRL 547 (573)
Q Consensus 539 ~q~q~E~~~ 547 (573)
-..++.-++
T Consensus 444 ~i~~l~k~i 452 (1074)
T KOG0250|consen 444 EILQLRKKI 452 (1074)
T ss_pred HHHHHHHHH
Confidence 554444443
No 19
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.84 E-value=2.3 Score=48.41 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 506 LAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 506 ~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
-.|..+|.-||......|.+|.+|+.++.++++
T Consensus 353 ~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~ 385 (546)
T PF07888_consen 353 SQWAQEKQALQHSAEADKDEIEKLSRELQMLEE 385 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 479999999999888889999999999977665
No 20
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.69 E-value=5.5 Score=40.22 Aligned_cols=125 Identities=24% Similarity=0.302 Sum_probs=85.3
Q ss_pred Hhhhhcccchhh---HHhhHHHHHHHHHhhhhhhhhhhHHHHH-------HhhhhHHHHHHHHHhhhhhhhhHHHHHHHH
Q 008232 426 RLKKGKQTLEDT---TMKRLSEMENALRKASGQVDRANAAVRR-------LETENAEIRAEMEASKLSAAESVTTCLEVA 495 (573)
Q Consensus 426 rlkKeKq~lEe~---T~KrLsEmEnAl~kas~QldrAna~vrr-------LE~ena~lr~EmEAaKL~A~ES~~sc~e~~ 495 (573)
.|..--+.||+. +--||.+...-|..+....|-+....+. .+.....|..++..|+..+.++..-+-++.
T Consensus 40 ~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~ 119 (237)
T PF00261_consen 40 SLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVE 119 (237)
T ss_dssp HHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455554 3344444444444444444444444444 445556678888999999999999888887
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 496 KREK-------KCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 496 kkek-------k~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
+|-. ..-.|+..-|..-.-|+++|..-...|..|...-.++.+..+.+|.+++.|
T Consensus 120 rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L 181 (237)
T PF00261_consen 120 RKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDL 181 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 7764 344667777788888888888888888888888888888888888877765
No 21
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.47 E-value=3 Score=41.90 Aligned_cols=127 Identities=20% Similarity=0.257 Sum_probs=58.2
Q ss_pred HhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhh
Q 008232 406 KLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA 485 (573)
Q Consensus 406 rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ 485 (573)
||.+.+.+|..++.+++..++- -.+.||.. +-. -.........+++.....+..|..++..++++++..+-...
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~--i~~~l~~~-~~~---~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~ 94 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRR--IEEILESD-SNG---QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLE 94 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhh-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666677666666543321 11111100 000 12223333334444444444455555555555544443333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 486 ESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 486 ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
+--.+....-..-...-...+.-.++...+++++..-++++..+++.+...+.
T Consensus 95 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~ 147 (302)
T PF10186_consen 95 ELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRR 147 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111111111111111233444556667777888888888777777766443
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.30 E-value=2.4 Score=52.51 Aligned_cols=20 Identities=20% Similarity=0.219 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHhhhhhhhhh
Q 008232 440 KRLSEMENALRKASGQVDRA 459 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrA 459 (573)
..|.+++..|.+....++.+
T Consensus 765 ~~le~~~~~l~~~~~~~~~~ 784 (1311)
T TIGR00606 765 NDIEEQETLLGTIMPEEESA 784 (1311)
T ss_pred HHHHHHHHHHHHHHHhHHHH
Confidence 34555555555555555555
No 23
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.25 E-value=5 Score=51.73 Aligned_cols=181 Identities=23% Similarity=0.295 Sum_probs=104.0
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhcHHHHHHHHhh-HHHHHHhhhhcccchh
Q 008232 364 ETITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQ------KAMQAARKLSNDLTELKMLRME-REETQRLKKGKQTLED 436 (573)
Q Consensus 364 ~~vp~D~KdEmil~Lv~rv~eLq~qlkewtdWA~q------KvmQaa~rL~kd~~ELk~LR~E-kee~~rlkKeKq~lEe 436 (573)
+-++--+++|.+...=+.++.|+.+++.=..=+++ ++.+.-.-|..++.-=+.+..+ -|+-.+++++|+.+|.
T Consensus 829 PLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~ 908 (1930)
T KOG0161|consen 829 PLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEK 908 (1930)
T ss_pred HHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999888888764444433 3333333333332211222222 2334556666666666
Q ss_pred h---HHhhHHH-------HHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHH
Q 008232 437 T---TMKRLSE-------MENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA---ESVTTCLEVAKREKKCLK 503 (573)
Q Consensus 437 ~---T~KrLsE-------mEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~---ES~~sc~e~~kkekk~lk 503 (573)
. +..++.+ +|...+++-..+.--...++.+|.....+..|..++.-.-. +-...|.+...+. .|
T Consensus 909 ~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL---~k 985 (1930)
T KOG0161|consen 909 ELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKL---SK 985 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 5 3333333 34444444444444445556666666666666555432222 2222344433332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhh
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~ 547 (573)
--..-|..-..|+++|..++.|+.++-+..++..+..+.+|.+.
T Consensus 986 ekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~l 1029 (1930)
T KOG0161|consen 986 EKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTL 1029 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23336677778888999999998888888888888877777654
No 24
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=94.21 E-value=7.8 Score=39.99 Aligned_cols=159 Identities=23% Similarity=0.310 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhcHHH----HHHHHhhHHHHHHhhhhcccc------hhhHHhhH
Q 008232 381 QIKDLERQVKER--------KEWAHQKAMQAARKLSNDLTE----LKMLRMEREETQRLKKGKQTL------EDTTMKRL 442 (573)
Q Consensus 381 rv~eLq~qlkew--------tdWA~qKvmQaa~rL~kd~~E----Lk~LR~Ekee~~rlkKeKq~l------Ee~T~KrL 442 (573)
.|..||++|.+- ++| .+|+-+.+.|||+=..- ....+..++=-...++-...+ =+-.+..+
T Consensus 22 ~IN~lE~~L~~ar~~fr~~l~e~-~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~v 100 (239)
T PF05276_consen 22 EINRLENELDEARATFRRLLSES-TKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSMHAAAKEMV 100 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666542 233 35677778888864321 222333333222222222222 23356777
Q ss_pred HHHHHHHHhhhh-hhhhh------hHHHHHHhhhhHHHHHHHHHhhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 443 SEMENALRKASG-QVDRA------NAAVRRLETENAEIRAEMEASKLS--AAESVTTCLEVAKREKKCLKRLLAWEKQKA 513 (573)
Q Consensus 443 sEmEnAl~kas~-QldrA------na~vrrLE~ena~lr~EmEAaKL~--A~ES~~sc~e~~kkekk~lkkl~~WEkQK~ 513 (573)
.-.|..|..-++ ++|-+ +++.+.-|+|+...++|.+-.+.- ..+....++.+-|+-+++++|..-|=..|+
T Consensus 101 ~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~ 180 (239)
T PF05276_consen 101 ALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKA 180 (239)
T ss_pred HHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 778888877773 66653 567777788888888888766553 456667788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 008232 514 KLQEEIANEKEKIKELQQCLARIQQDQ 540 (573)
Q Consensus 514 ~LQEEla~eK~Kl~~l~qel~qak~~q 540 (573)
++++.|..+|.+|..|++.+.++|..=
T Consensus 181 ~~~~~l~~~k~~v~~Le~~v~~aK~~Y 207 (239)
T PF05276_consen 181 KFNQQLEEQKEKVEELEAKVKQAKSRY 207 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988653
No 25
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.15 E-value=7.1 Score=44.04 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=45.7
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 455 QVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (573)
Q Consensus 455 QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~ 534 (573)
....+.+.|..|++|...+|.++++++-.-.++-...- ..-..|+-.-.+-.-...|...-+..+..+.++++
T Consensus 331 ~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~-------~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e 403 (522)
T PF05701_consen 331 REKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMS-------ELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAE 403 (522)
T ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555554333222111111 11223344444444445566666777777777777
Q ss_pred HHHhHhHhhhhhhhh
Q 008232 535 RIQQDQKETEVRLIC 549 (573)
Q Consensus 535 qak~~q~q~E~~~~~ 549 (573)
+++...+.+|.||+-
T Consensus 404 ~~ka~i~t~E~rL~a 418 (522)
T PF05701_consen 404 QTKAAIKTAEERLEA 418 (522)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777654
No 26
>PRK11637 AmiB activator; Provisional
Probab=94.00 E-value=11 Score=41.01 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 506 LAWEKQKAKLQEEIANEKEKIKELQQCLARI 536 (573)
Q Consensus 506 ~~WEkQK~~LQEEla~eK~Kl~~l~qel~qa 536 (573)
..-++++...+.+|+..+....+|++.|++.
T Consensus 222 ~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 222 TGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555555555555555443
No 27
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.75 E-value=11 Score=41.67 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=3.5
Q ss_pred HHhhhhhhhh
Q 008232 449 LRKASGQVDR 458 (573)
Q Consensus 449 l~kas~Qldr 458 (573)
|.++..++..
T Consensus 257 L~~l~~~~~~ 266 (562)
T PHA02562 257 LNKLNTAAAK 266 (562)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 28
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.71 E-value=9 Score=47.28 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=18.0
Q ss_pred ccCCcccCCCccccCCchhHHHHhHhHH
Q 008232 265 MTLPRDIECPKRFNLSPSMKSLLKRNVA 292 (573)
Q Consensus 265 ~~l~~~~~~~kr~~~s~s~~s~Lkr~~~ 292 (573)
|.-++.+.||--+..|+-.+.++++-+.
T Consensus 294 m~hk~~l~FP~~~~VSeeakdLI~~ll~ 321 (1317)
T KOG0612|consen 294 MNHKESLSFPDETDVSEEAKDLIEALLC 321 (1317)
T ss_pred hchhhhcCCCcccccCHHHHHHHHHHhc
Confidence 3445567788667777777777665444
No 29
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.70 E-value=1.6 Score=53.98 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHH
Q 008232 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEM 477 (573)
Q Consensus 442 LsEmEnAl~kas~QldrAna~vrrLE~ena~lr~Em 477 (573)
+.+++..+..+..+++.....+.+++.+...++.++
T Consensus 746 ip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~ 781 (1311)
T TIGR00606 746 IPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEE 781 (1311)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333344444444444444444444444444444444
No 30
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.58 E-value=6.4 Score=41.38 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhh
Q 008232 443 SEMENALRKASGQVDRANAAVRRLET 468 (573)
Q Consensus 443 sEmEnAl~kas~QldrAna~vrrLE~ 468 (573)
.+.+..+..+..++.++.+....++.
T Consensus 199 ~~~~~~~~~~~~~l~~~~~~l~~~~~ 224 (423)
T TIGR01843 199 LELERERAEAQGELGRLEAELEVLKR 224 (423)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33334444443333333333333333
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.53 E-value=11 Score=46.09 Aligned_cols=114 Identities=17% Similarity=0.287 Sum_probs=69.7
Q ss_pred hHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 008232 437 TTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQK-AKL 515 (573)
Q Consensus 437 ~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK-~~L 515 (573)
..+.+|+|.|--+......++.-..-...+-.----.|.|+.+.|-.=-++-.+..++.++-..+=|.+-.-++|- -.+
T Consensus 313 ~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~ 392 (1074)
T KOG0250|consen 313 EARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNEL 392 (1074)
T ss_pred HHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456677777666666665554444333333333344555555555545555555555555544555555566665 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 516 QEEIANEKEKIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 516 QEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
+.++..-..|+.+|.++.+....+.+++....+++
T Consensus 393 ~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 393 GSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888888888888777777776665
No 32
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.22 E-value=0.8 Score=48.03 Aligned_cols=114 Identities=25% Similarity=0.376 Sum_probs=84.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhcHHHHHHHHhhHHHHHHhhhhcccc
Q 008232 365 TITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAA----------RKLSNDLTELKMLRMEREETQRLKKGKQTL 434 (573)
Q Consensus 365 ~vp~D~KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa----------~rL~kd~~ELk~LR~Ekee~~rlkKeKq~l 434 (573)
|+-.+=||=+=-+-++.|+||+.||.--+-=-+||-+|-- ++.-.+++|.-. ||.|-|.|
T Consensus 3 Wa~eEWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~----------LkREnq~l 72 (307)
T PF10481_consen 3 WAVEEWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSA----------LKRENQSL 72 (307)
T ss_pred chHhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhh----------hhhhhhhH
Confidence 7777778888888999999999999888888888877731 233333444333 34444443
Q ss_pred hh------hHHhhHHH----HHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhH
Q 008232 435 ED------TTMKRLSE----MENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESV 488 (573)
Q Consensus 435 Ee------~T~KrLsE----mEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~ 488 (573)
=| .|+.||+. -|.-+.--.|||.++.-.+.+||.|+..++.|+|-+...+....
T Consensus 73 ~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 73 MESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred HHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 32 26666664 46677778899999999999999999999999999888777443
No 33
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.00 E-value=13 Score=44.64 Aligned_cols=152 Identities=20% Similarity=0.269 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhH-------HhhHHH
Q 008232 372 DEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTT-------MKRLSE 444 (573)
Q Consensus 372 dEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T-------~KrLsE 444 (573)
..+|..+-.|+.+|+-++++-.-=| |+.|.-..+|-.+++.|..-|.+-|.++.+-+|+..-==-+ .+++++
T Consensus 357 r~~~~q~~~ql~~le~~~~e~q~~~-qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~ 435 (980)
T KOG0980|consen 357 RRRIEQYENQLLALEGELQEQQREA-QENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTE 435 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888765444 44555556899998888888888888876633322111111 233444
Q ss_pred HHH---H----HHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 445 MEN---A----LRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQE 517 (573)
Q Consensus 445 mEn---A----l~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQE 517 (573)
+.. + ..-...|++-+.-+.-..+.+|.+|--..|..+..+.+-.| |-+...+.+.+.+.|+++|+.
T Consensus 436 l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~-------K~e~~~~~le~l~~El~~l~~ 508 (980)
T KOG0980|consen 436 LRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAET-------KTESQAKALESLRQELALLLI 508 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHH
Confidence 332 1 22345677788888888888899998888888877766444 344455678888999999999
Q ss_pred HHHHHHHHHHHHHH
Q 008232 518 EIANEKEKIKELQQ 531 (573)
Q Consensus 518 Ela~eK~Kl~~l~q 531 (573)
|++..+.++..+-|
T Consensus 509 e~~~lq~~~~~~~q 522 (980)
T KOG0980|consen 509 ELEELQRTLSNLAQ 522 (980)
T ss_pred HHHHHHHHhhhHHH
Confidence 99888888665544
No 34
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.94 E-value=6.5 Score=49.75 Aligned_cols=152 Identities=13% Similarity=0.145 Sum_probs=117.6
Q ss_pred HHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 402 QAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 402 Qaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
+|...|++.-.=--.|+.+.+.+++- ++...+.+.+.+..+.+++..+-.+.+..+.++-+..+.+.+|..-=
T Consensus 975 ~~~~~l~~~~~~~~~Le~~Le~iE~~-------~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g 1047 (1486)
T PRK04863 975 DAAEMLAKNSDLNEKLRQRLEQAEQE-------RTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLG 1047 (1486)
T ss_pred HHHhHhhcchhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455555544445566666655443 67788999999999999999999999999999999999999998887
Q ss_pred hhhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhccccccc
Q 008232 482 LSAAESVTTCLEVAKR-----EKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLICLFPWFST 556 (573)
Q Consensus 482 L~A~ES~~sc~e~~kk-----ekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~~~ 556 (573)
+.|-+.++-.+.+-+. =..+--|--.-|+|....+.||...+.+|..+..++....+...++-++|--+.-|.-.
T Consensus 1048 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v~~~~~~ 1127 (1486)
T PRK04863 1048 VPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKD 1127 (1486)
T ss_pred CCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777665554431 12233455578999999999999999999999999999999999999999988777665
Q ss_pred cccc
Q 008232 557 HKIS 560 (573)
Q Consensus 557 ~~~~ 560 (573)
+.+-
T Consensus 1128 ~~~~ 1131 (1486)
T PRK04863 1128 NGVE 1131 (1486)
T ss_pred cChh
Confidence 5443
No 35
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.84 E-value=18 Score=42.64 Aligned_cols=111 Identities=21% Similarity=0.324 Sum_probs=66.0
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHH-HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 008232 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAE-MEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQ-KAKLQ 516 (573)
Q Consensus 439 ~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~E-mEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQ-K~~LQ 516 (573)
+.|..+||+.+++...+|-.....++.||.|..++|.. .| --...|..-+=+.+..-+.-.|++..+=|+- |.-|=
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e--~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLf 621 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKE--SEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45889999999999999999999999999999988885 55 1223444444444555555555555555542 22233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhcc
Q 008232 517 EEIANEKEKIKELQQCLARIQQDQKETEVRLICLF 551 (573)
Q Consensus 517 EEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~ 551 (573)
--|-+-|+.|.-++..+-+=...+.++-+|+.-+.
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333333345554443
No 36
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.81 E-value=6.7 Score=50.63 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHH
Q 008232 391 ERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENAL 449 (573)
Q Consensus 391 ewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl 449 (573)
.+.|=||...--+-..|.+.++-++.|-.+.+++++.+++-...=-.+-+|+..++.++
T Consensus 1618 ~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~ 1676 (1930)
T KOG0161|consen 1618 IQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAEL 1676 (1930)
T ss_pred HHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666665544432222334444444333
No 37
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.69 E-value=7.6 Score=41.06 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQK 541 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~ 541 (573)
++..-+.|...|+++|.+-+.++.+++.++++++...+
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666666666665554443
No 38
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.66 E-value=4.8 Score=48.71 Aligned_cols=136 Identities=21% Similarity=0.277 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhh-hhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHH
Q 008232 396 AHQKAMQAARKLSNDLTELKMLRMEREETQRLK-KGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIR 474 (573)
Q Consensus 396 A~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlk-KeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr 474 (573)
+-+++-+.++++-+-..|...|-+|.|+.++-. .-|+.|+ +-.+.++.++..+.+.-+-|+.+...|-++..+...+.
T Consensus 799 ~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~-~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k 877 (1174)
T KOG0933|consen 799 AKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLE-QLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQK 877 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Confidence 445666666666666667777777776544321 1222222 23355556666666666666666666666666666655
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 475 AEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQC 532 (573)
Q Consensus 475 ~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qe 532 (573)
+-|-.---.....+++|..........-=..+--|.+-.+++.|=+..+-++..|.+.
T Consensus 878 ~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k 935 (1174)
T KOG0933|consen 878 AKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKK 935 (1174)
T ss_pred HHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHh
Confidence 5444333333334444433333333332334444555556666666666665555443
No 39
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.48 E-value=11 Score=42.80 Aligned_cols=111 Identities=21% Similarity=0.243 Sum_probs=91.9
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhHH----------HHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008232 438 TMKRLSEMENALRKASGQVDRANAA----------VRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLA 507 (573)
Q Consensus 438 T~KrLsEmEnAl~kas~QldrAna~----------vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~ 507 (573)
..+.|.+++........++++-+-. ++.++.+...+..+++...-...+....+-++.++-++..+++..
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee 394 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE 394 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3366777888888888888888888 999999999999999987777778888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhh
Q 008232 508 WEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 508 WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~ 548 (573)
-+++...+++.|..-+.......+.|.+.+..-..+....+
T Consensus 395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~ 435 (569)
T PRK04778 395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLE 435 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888777777777766665554443
No 40
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.36 E-value=6.9 Score=37.11 Aligned_cols=117 Identities=15% Similarity=0.246 Sum_probs=56.5
Q ss_pred HHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHH
Q 008232 414 LKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLE 493 (573)
Q Consensus 414 Lk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e 493 (573)
|.+||.|++.++-. =+.-..++-++|......-.+|..-+.-+..||.+...+...+..+|-.+.++...-
T Consensus 2 m~~lk~E~d~a~~r-------~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~-- 72 (143)
T PF12718_consen 2 MQALKLEADNAQDR-------AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK-- 72 (143)
T ss_pred hHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--
Confidence 45677777755432 111112222333333333333333333444444444444444444444444443321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhh
Q 008232 494 VAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 494 ~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~ 548 (573)
....+..+-..+|.+||..--.+|....+.|.++...-.++|-+-+
T Consensus 73 ---------~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~ 118 (143)
T PF12718_consen 73 ---------SNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVK 118 (143)
T ss_pred ---------HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 1122444555566677766666666666666666666666654433
No 41
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.18 E-value=6.1 Score=46.86 Aligned_cols=103 Identities=20% Similarity=0.234 Sum_probs=82.7
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 443 SEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVT--TCLEVAKREKKCLKRLLAWEKQKAKLQEEIA 520 (573)
Q Consensus 443 sEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~--sc~e~~kkekk~lkkl~~WEkQK~~LQEEla 520 (573)
.++|-.|.++..|++...+.++..|...++|+.|++.+|=+.+...+ -|+.- ....-+.+...++.|+.
T Consensus 606 ~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e---------~~e~le~~~~~~e~E~~ 676 (769)
T PF05911_consen 606 EELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKE---------SYESLETRLKDLEAEAE 676 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhhhhhHHHHHHH
Confidence 35666777888899999999999999999999999988766554444 23322 23456778888999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhHhhhhhhhhccccc
Q 008232 521 NEKEKIKELQQCLARIQQDQKETEVRLICLFPWF 554 (573)
Q Consensus 521 ~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~ 554 (573)
.-..||..|..+|++-+....+.++|.+-|--=+
T Consensus 677 ~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el 710 (769)
T PF05911_consen 677 ELQSKISSLEEELEKERALSEELEAKCRELEEEL 710 (769)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 9999999999999999999999999988774433
No 42
>PF13514 AAA_27: AAA domain
Probab=92.10 E-value=19 Score=44.13 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=18.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 365 TITDDQKDEIVVTMLHQIKDLERQVKERKEWAH 397 (573)
Q Consensus 365 ~vp~D~KdEmil~Lv~rv~eLq~qlkewtdWA~ 397 (573)
++|.+--.+.+...+..++++...++++.++..
T Consensus 718 gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 750 (1111)
T PF13514_consen 718 GLPADASPEEALEALELLEELREALAEIRELRR 750 (1111)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345554455565566666666655555555554
No 43
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.05 E-value=12 Score=47.55 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008232 375 VVTMLHQIKDLERQVKERKEWA 396 (573)
Q Consensus 375 il~Lv~rv~eLq~qlkewtdWA 396 (573)
+-.|.+|++.|+.|.+.=.+|-
T Consensus 316 L~ELe~rL~kLEkQaEkA~kyl 337 (1486)
T PRK04863 316 LAELNEAESDLEQDYQAASDHL 337 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665555553
No 44
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=91.75 E-value=20 Score=44.34 Aligned_cols=160 Identities=26% Similarity=0.346 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccc----hhhHHhhHHHHHHHHHhhh
Q 008232 378 MLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTL----EDTTMKRLSEMENALRKAS 453 (573)
Q Consensus 378 Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~l----Ee~T~KrLsEmEnAl~kas 453 (573)
+..+..+++.+++. ++.++-++-+.+..-..+++..+. ..++++.+++.+ ++-...|....+.++..+.
T Consensus 619 ~~~~~~~~e~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 691 (1201)
T PF12128_consen 619 AEERQEELEKQLKQ----INKKIEELKREITQAEQELKQAEQ---DLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELE 691 (1201)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555543 233333333333333333333332 223333333333 3334566666666666666
Q ss_pred hhhhhhhHHHHHHhhhh----HHHHHHHHHhhhhhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH----H
Q 008232 454 GQVDRANAAVRRLETEN----AEIRAEMEASKLSAAESVTTCLEVAKRE--------KKCLKRLLAWEKQKAKLQ----E 517 (573)
Q Consensus 454 ~QldrAna~vrrLE~en----a~lr~EmEAaKL~A~ES~~sc~e~~kke--------kk~lkkl~~WEkQK~~LQ----E 517 (573)
.++...+.....++.+. .+++.|+-+..-.-......-.+..+.+ +.-++.++.|-.+...=+ +
T Consensus 692 ~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~ 771 (1201)
T PF12128_consen 692 EELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPE 771 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 66666665544444433 3333333222222111111222222221 122334444443322111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 518 EIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 518 Ela~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
.|..-+.+|.+|.++|..+++.+..+-
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~r~~V~ 798 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEERRAEVI 798 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 566677888888888888777776664
No 45
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.73 E-value=11 Score=46.60 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=14.0
Q ss_pred hhhhhHHHHHHhhhhHHHHHHHH
Q 008232 456 VDRANAAVRRLETENAEIRAEME 478 (573)
Q Consensus 456 ldrAna~vrrLE~ena~lr~EmE 478 (573)
++++++.-+.|+.-+...++|-|
T Consensus 538 ~~kv~~~rk~le~~~~d~~~e~~ 560 (1317)
T KOG0612|consen 538 LEKVNSLRKQLEEAELDMRAESE 560 (1317)
T ss_pred HhhHHHHHHHHHHhhhhhhhhHH
Confidence 55566666666666666665555
No 46
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.67 E-value=7 Score=41.09 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhhhh
Q 008232 524 EKIKELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 524 ~Kl~~l~qel~qak~~q~q~E~~~~ 548 (573)
.++.++++++.+++....+++.++.
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666655555555443
No 47
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=91.64 E-value=1.8 Score=42.26 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=73.9
Q ss_pred hHHHH-HHhhhhHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 460 NAAVR-RLETENAEIRAEMEASKLS-AAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (573)
Q Consensus 460 na~vr-rLE~ena~lr~EmEAaKL~-A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak 537 (573)
||.|| +.+.+++.-+++..--|.. ..=+...|...+..-+...-..+.++.+...|++|++.-+.++..|+.++...+
T Consensus 52 Ns~VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 52 NAYVRKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 3677777666666555532 455667788888777777777889999999999999999999999999999999
Q ss_pred hHhHhhhhhhhhccc
Q 008232 538 QDQKETEVRLICLFP 552 (573)
Q Consensus 538 ~~q~q~E~~~~~~~~ 552 (573)
+....+|-..+-|+-
T Consensus 132 ~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 132 QRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988877764
No 48
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=91.45 E-value=22 Score=37.90 Aligned_cols=168 Identities=18% Similarity=0.263 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHH-------HHHHhhHHHHHHhhhhccc---chhhHHhhHHHHHHHH
Q 008232 380 HQIKDLERQVKERKEWAHQKAMQAARKLSNDLTEL-------KMLRMEREETQRLKKGKQT---LEDTTMKRLSEMENAL 449 (573)
Q Consensus 380 ~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~EL-------k~LR~Ekee~~rlkKeKq~---lEe~T~KrLsEmEnAl 449 (573)
.+|++|.+.-.+-..=+++ .++-++.|.....+. ++|+.+.++.+...--.+. -|.--.+++++++--|
T Consensus 69 eev~elK~kR~ein~kl~e-L~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~l 147 (294)
T COG1340 69 EEVQELKEKRDEINAKLQE-LRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKEL 147 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 3344444433333333443 455555555444432 4444444433333222211 1233568999999999
Q ss_pred HhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 450 RKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKEL 529 (573)
Q Consensus 450 ~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l 529 (573)
..+..|++.. .-++.|-.|.-.+|.+...=.=...+-+...++....=.++..+.--.-+.-..+++++-.-..++.++
T Consensus 148 e~~~k~~e~~-~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~ 226 (294)
T COG1340 148 EDAKKALEEN-EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDEL 226 (294)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9888888765 456777788888888877777777777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhHhHhhhhhhhh
Q 008232 530 QQCLARIQQDQKETEVRLIC 549 (573)
Q Consensus 530 ~qel~qak~~q~q~E~~~~~ 549 (573)
+.++-.+.+-..+++.++..
T Consensus 227 ~ee~~~~~~elre~~k~ik~ 246 (294)
T COG1340 227 HEEFRNLQNELRELEKKIKA 246 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88777777777777766554
No 49
>PF13514 AAA_27: AAA domain
Probab=91.25 E-value=14 Score=45.12 Aligned_cols=107 Identities=27% Similarity=0.397 Sum_probs=73.0
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhc------
Q 008232 364 ETITDDQKDEIVVTMLHQIKDLERQVKERK----EWA--HQKAMQAARKLSNDLTELKMLRMEREETQRLKKGK------ 431 (573)
Q Consensus 364 ~~vp~D~KdEmil~Lv~rv~eLq~qlkewt----dWA--~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeK------ 431 (573)
-|-|. .+.-.|-.++.++++++.++++.. +|. .+.+-++-.++..-..+++.|+.++...++++.-.
T Consensus 142 Lfkpr-g~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~ 220 (1111)
T PF13514_consen 142 LFKPR-GRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAEL 220 (1111)
T ss_pred hhCCC-CCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 48888 666678899999999999998764 564 35566777788888888888888888888765411
Q ss_pred c-------------cchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhH
Q 008232 432 Q-------------TLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENA 471 (573)
Q Consensus 432 q-------------~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena 471 (573)
+ .|-+....|+.+++..+..+..++++....+..|+.+..
T Consensus 221 ~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 273 (1111)
T PF13514_consen 221 QQLEAELAELGEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELD 273 (1111)
T ss_pred HHHHHHHHhcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 222345566666666666666666665555555544443
No 50
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.24 E-value=3.9 Score=47.06 Aligned_cols=152 Identities=22% Similarity=0.346 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----HHHH-----------HHHHhhHHHHHHhhhhcccchhhHHhhHH
Q 008232 380 HQIKDLERQVKERKEWAHQKAMQAARKLSND-----LTEL-----------KMLRMEREETQRLKKGKQTLEDTTMKRLS 443 (573)
Q Consensus 380 ~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd-----~~EL-----------k~LR~Ekee~~rlkKeKq~lEe~T~KrLs 443 (573)
||=--|-+-++-....-+ |.-++.++++.- .... ..|++.+|+.+ .+|+.--++.-.-.+.
T Consensus 342 H~RDALAAA~kAY~~yk~-kl~~vEr~~~~~g~~~d~~rika~VIrG~~l~eal~~~~e~~~--p~e~~~~~~~e~~ei~ 418 (652)
T COG2433 342 HERDALAAAYKAYLAYKP-KLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEER--PREKEGTEEEERREIT 418 (652)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHhcccccchhhHHHHHHHeecCCcHHHHHHHHHhhhc--cccccccccccccchh
Confidence 344445555555555555 777777777654 2222 24555555444 2222222222222223
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 008232 444 EMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKK---CLKRLLAWEKQKAKLQEEIA 520 (573)
Q Consensus 444 EmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk---~lkkl~~WEkQK~~LQEEla 520 (573)
-.++.|.+-. ..|.+|+.||+.|+++.|.-|---.+--.-|-++.++... --+.+...+..-..|+-+|.
T Consensus 419 ~~~~~i~~~~-------~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 419 VYEKRIKKLE-------ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3333333333 2344555555555555555443333333334444433332 22356677888889999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhH
Q 008232 521 NEKEKIKELQQCLARIQQDQK 541 (573)
Q Consensus 521 ~eK~Kl~~l~qel~qak~~q~ 541 (573)
.++.++.+|...|+++++.++
T Consensus 492 e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 492 EKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 51
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=91.21 E-value=2.3 Score=41.97 Aligned_cols=98 Identities=18% Similarity=0.320 Sum_probs=72.3
Q ss_pred hhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 008232 451 KASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEK----EKI 526 (573)
Q Consensus 451 kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK----~Kl 526 (573)
+...++++.+..+.+++.++++++.+.+.+|-.-.++ ..-.+.|.+++.-+++...|+.||+.-+ .+|
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~--------~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i 137 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES--------EEREELLEELEELKKELKELKKELEKYSENDPEKI 137 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3344555566666777777777777777776655555 3344578899999999999999999554 478
Q ss_pred HHHHHHHHHHHhHhHhhhhhhhhccccccc
Q 008232 527 KELQQCLARIQQDQKETEVRLICLFPWFST 556 (573)
Q Consensus 527 ~~l~qel~qak~~q~q~E~~~~~~~~~~~~ 556 (573)
.++.+++..++...+..-..+-+|--|+..
T Consensus 138 ~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 138 EKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888888888888777777777777654
No 52
>PF13166 AAA_13: AAA domain
Probab=91.14 E-value=33 Score=39.34 Aligned_cols=108 Identities=21% Similarity=0.309 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCL-KRLLAWEKQKAKLQEE 518 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~l-kkl~~WEkQK~~LQEE 518 (573)
..+..+...+......++..|..+..++.+..+++......-+ .....-.+...++.+.+ +.++..++++..++++
T Consensus 363 ~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~ 439 (712)
T PF13166_consen 363 EDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLI---AKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEE 439 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777788788887777777755543322 22222222233444443 4788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 519 IANEKEKIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 519 la~eK~Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
+..-+.+|.+|++++.......+.|-..++-+
T Consensus 440 ~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 440 IKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999998899999998888887
No 53
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.93 E-value=9.9 Score=46.13 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 472 EIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (573)
Q Consensus 472 ~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak 537 (573)
....+|-++...+.+...-..++=++-.+.-..+.+--++-.+.|.+|..-+.-|.++|.+|+++.
T Consensus 294 ~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~ 359 (1072)
T KOG0979|consen 294 QKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETE 359 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 333333344444344333333333333334444445555555555555555555666655555543
No 54
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.72 E-value=20 Score=38.04 Aligned_cols=14 Identities=29% Similarity=0.207 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHH
Q 008232 390 KERKEWAHQKAMQA 403 (573)
Q Consensus 390 kewtdWA~qKvmQa 403 (573)
+.|-+|-.|-+-.-
T Consensus 137 ~~WYeWR~~ll~gl 150 (325)
T PF08317_consen 137 KMWYEWRMQLLEGL 150 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 68999986654433
No 55
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.69 E-value=8.7 Score=44.32 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=47.7
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHH-----------HHHHHHHHHHHHHHHHH
Q 008232 438 TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVT-----------TCLEVAKREKKCLKRLL 506 (573)
Q Consensus 438 T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~-----------sc~e~~kkekk~lkkl~ 506 (573)
|+.-|.+=|+.|.|-.+.+|.+..-+..|..+=...|..+..-..+-.+... ...++-.+-+.....++
T Consensus 385 ~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~ 464 (594)
T PF05667_consen 385 TVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIR 464 (594)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555688888888889888888888888777666666554433332211 11222223333344455
Q ss_pred HHHHHHHHHHHHHH
Q 008232 507 AWEKQKAKLQEEIA 520 (573)
Q Consensus 507 ~WEkQK~~LQEEla 520 (573)
.||.+...|+.|+.
T Consensus 465 ~Kee~~~qL~~e~e 478 (594)
T PF05667_consen 465 QKEELYKQLVKELE 478 (594)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555543
No 56
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.62 E-value=12 Score=46.32 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=13.5
Q ss_pred hHhcccccccCchhhhHHHHhH
Q 008232 108 AILKNGHCYGGMDVLTNILHNS 129 (573)
Q Consensus 108 aLL~AG~CYGplDPVSNII~NT 129 (573)
+|..++|-|.-.+-+.|.|+|+
T Consensus 172 SL~~s~~~~~hI~kli~~vln~ 193 (1201)
T PF12128_consen 172 SLCESSHQYQHIEKLINAVLNK 193 (1201)
T ss_pred CcCCCcccccChHHHHHHHHhc
Confidence 4556667666666666666665
No 57
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.61 E-value=34 Score=44.27 Aligned_cols=117 Identities=26% Similarity=0.331 Sum_probs=69.7
Q ss_pred HHHHHHhhhhcccchhhHH---hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 008232 421 REETQRLKKGKQTLEDTTM---KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKR 497 (573)
Q Consensus 421 kee~~rlkKeKq~lEe~T~---KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kk 497 (573)
.+..+.+|.+..+|++-+- .=|+-=++-+...+.+|=.||.-+.+|++|..-||.|-+.=|.. .++..+=.+-+-+
T Consensus 695 ~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t-~~rL~~e~~~l~~ 773 (1822)
T KOG4674|consen 695 EKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKET-EERLSQELEKLSA 773 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3455667777777775432 33444566677788888889999999999999999988876543 3344444444444
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Q 008232 498 EKKCLK-RLLAWEKQKAKLQEEIANEK----EKIKELQQCLARIQQ 538 (573)
Q Consensus 498 ekk~lk-kl~~WEkQK~~LQEEla~eK----~Kl~~l~qel~qak~ 538 (573)
++..|. .+-.++.++.-+++..++.| ++|.+|..+|+.++.
T Consensus 774 e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~ 819 (1822)
T KOG4674|consen 774 EQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKK 819 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 44445555555554444433 334444455544443
No 58
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.60 E-value=22 Score=44.70 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIA 520 (573)
Q Consensus 441 rLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla 520 (573)
.+.+.+..+..+...+++++.....|+.+...+++|.++.+-+..--. = ++..+.-..+..+.++....++++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~--~----~eL~el~~ql~~~~~~a~~~~~~~~ 357 (1353)
T TIGR02680 284 DLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQD--A----EELERARADAEALQAAAADARQAIR 357 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666777777666554322111 1 1111111255566666666666776
Q ss_pred HHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 521 NEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 521 ~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
.-++++.++++++..+...-.+.+
T Consensus 358 ~a~~~~e~~~~~~~~~~~r~~~~~ 381 (1353)
T TIGR02680 358 EAESRLEEERRRLDEEAGRLDDAE 381 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666554444443
No 59
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.53 E-value=26 Score=40.76 Aligned_cols=117 Identities=23% Similarity=0.384 Sum_probs=60.5
Q ss_pred HHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhh-------hh-hHHH-HHHhhhhHHHHHHHHH--
Q 008232 411 LTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVD-------RA-NAAV-RRLETENAEIRAEMEA-- 479 (573)
Q Consensus 411 ~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~Qld-------rA-na~v-rrLE~ena~lr~EmEA-- 479 (573)
-.++.+|+.||+.. +.|+.++|+-|.+...|+. -| .+.+ ..|..|...|++|.|.
T Consensus 35 seev~~L~eEk~~~--------------~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~ 100 (617)
T PF15070_consen 35 SEEVRTLKEEKEHD--------------ISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLE 100 (617)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777633 4445555555555444433 11 2222 4677777888887764
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHhHhh
Q 008232 480 SKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKE-------LQQCLARIQQDQKET 543 (573)
Q Consensus 480 aKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~-------l~qel~qak~~q~q~ 543 (573)
.++.|..-.-..+..+.++++. +|...|..--.++++..+..+-+.. +.+.+.|.+++++|+
T Consensus 101 ~qlqaqv~~ne~Ls~L~~EqEe--rL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL 169 (617)
T PF15070_consen 101 EQLQAQVENNEQLSRLNQEQEE--RLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQL 169 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHH
Confidence 4455543333444444444433 4555555555555555443333322 234455555555554
No 60
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.13 E-value=49 Score=39.68 Aligned_cols=101 Identities=28% Similarity=0.327 Sum_probs=47.4
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhHHHHHH---hhhhHHHHHH-HHHhhh-hhhhhHH--HHHHHHHHHHHHHHHHHHHHH
Q 008232 438 TMKRLSEMENALRKASGQVDRANAAVRRL---ETENAEIRAE-MEASKL-SAAESVT--TCLEVAKREKKCLKRLLAWEK 510 (573)
Q Consensus 438 T~KrLsEmEnAl~kas~QldrAna~vrrL---E~ena~lr~E-mEAaKL-~A~ES~~--sc~e~~kkekk~lkkl~~WEk 510 (573)
-++.+.+.+..+.+.....++.....+++ +.+++++... .+.+++ ..-...- ...++.++-.+.+.....+++
T Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~ 389 (908)
T COG0419 310 LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEE 389 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34556666665555555444444444443 5555555222 222222 2111111 112333333335666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 511 QKAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 511 QK~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
+...+..+++....++..+++.+...++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 417 (908)
T COG0419 390 AIQELKEELAELSAALEEIQEELEELEK 417 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655555544444443333
No 61
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.09 E-value=46 Score=39.40 Aligned_cols=90 Identities=23% Similarity=0.212 Sum_probs=72.1
Q ss_pred HHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 448 ALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIK 527 (573)
Q Consensus 448 Al~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~ 527 (573)
-+++---|+..-.+.++.++.|.-.+..=||--|-.|.|...+--.+.-+-.++-+++..-+.|-+.+-.||..++.|..
T Consensus 525 ~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~ 604 (698)
T KOG0978|consen 525 KIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRK 604 (698)
T ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556677777777777788999999999999999888888888888988888888888888888888888
Q ss_pred HHHHHHHHHH
Q 008232 528 ELQQCLARIQ 537 (573)
Q Consensus 528 ~l~qel~qak 537 (573)
+|+++++..+
T Consensus 605 rleEE~e~L~ 614 (698)
T KOG0978|consen 605 RLEEELERLK 614 (698)
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 62
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.08 E-value=35 Score=37.85 Aligned_cols=36 Identities=8% Similarity=0.189 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 503 KRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 503 kkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
..+...+.+...+.+||..-.+++.++..++++...
T Consensus 365 ~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~k 400 (562)
T PHA02562 365 AAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400 (562)
T ss_pred HHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555444444444444444433
No 63
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.04 E-value=10 Score=45.94 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=30.8
Q ss_pred HHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhh
Q 008232 447 NALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAES 487 (573)
Q Consensus 447 nAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES 487 (573)
.|+.++....++-.+.+..||.....+|.|.|-++..-.+-
T Consensus 258 ~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~ 298 (1200)
T KOG0964|consen 258 DALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKI 298 (1200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777778888888888888898888777664443
No 64
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.99 E-value=25 Score=36.16 Aligned_cols=126 Identities=18% Similarity=0.271 Sum_probs=74.4
Q ss_pred HHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHH
Q 008232 414 LKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLE 493 (573)
Q Consensus 414 Lk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e 493 (573)
|+.+|.+.+ ....+-++.+|..=-.++.++.....+.+..+..+..-+.++......++.|++..+-.-..=.....
T Consensus 171 L~eiR~~ye--~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~- 247 (312)
T PF00038_consen 171 LREIRAQYE--EIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLR- 247 (312)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhhHHHHHH--HHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHH-
Confidence 566777766 34455666778777788888888888877777777777777777777777776654322111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 494 VAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 494 ~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
.-+...-..++.|......|+.||..-+..+.+..++....-..+=.++
T Consensus 248 --~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld 296 (312)
T PF00038_consen 248 --ELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALD 296 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 1122223344555555666666666666666665555555444433333
No 65
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.89 E-value=15 Score=37.61 Aligned_cols=110 Identities=23% Similarity=0.309 Sum_probs=56.7
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHH
Q 008232 438 TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLK-------RLLAWEK 510 (573)
Q Consensus 438 T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lk-------kl~~WEk 510 (573)
.+.||-.||-.+++|...|.++..+++.|+.+.-....|.+----.+.+.....+.+...-.+.-+ ++.--+.
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~ 89 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999988766554443322212222222222222221111111 2333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhh
Q 008232 511 QKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 511 QK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~ 547 (573)
....|.++...--.-..+++++|..++..+...-.+.
T Consensus 90 ~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 90 EIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555555444444
No 66
>PRK11281 hypothetical protein; Provisional
Probab=89.85 E-value=8 Score=47.65 Aligned_cols=86 Identities=24% Similarity=0.302 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHH
Q 008232 394 EWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEI 473 (573)
Q Consensus 394 dWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~l 473 (573)
+=-++++-+|.+++.+-..+|..|+++-+....-.-.+..+.+ =-.+|.+.|..|..+..++..+|+..-.+.+.-+..
T Consensus 83 ~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~q-LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERA 161 (1113)
T PRK11281 83 EQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQ-LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERA 161 (1113)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Confidence 3345677777777777667776666532221100001111111 225566666666666666666666666655544444
Q ss_pred HHHHHHh
Q 008232 474 RAEMEAS 480 (573)
Q Consensus 474 r~EmEAa 480 (573)
+..|.++
T Consensus 162 Q~~lsea 168 (1113)
T PRK11281 162 QAALYAN 168 (1113)
T ss_pred HHHHHHH
Confidence 4444433
No 67
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.73 E-value=28 Score=43.20 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 008232 372 DEIVVTMLHQIKDLERQV 389 (573)
Q Consensus 372 dEmil~Lv~rv~eLq~ql 389 (573)
+|.+.+|=+++.+|++++
T Consensus 805 ee~~~~lr~~~~~l~~~l 822 (1293)
T KOG0996|consen 805 EERVRKLRERIPELENRL 822 (1293)
T ss_pred HHHHHHHHHhhHHHHhHH
Confidence 344555555555555543
No 68
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.37 E-value=8.2 Score=38.07 Aligned_cols=104 Identities=23% Similarity=0.345 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIA 520 (573)
Q Consensus 441 rLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla 520 (573)
-|-+||.+|.++...|-++-+...+|+.+..++..+.+-=--+|-.....=.|-+ -+..|.+.+.-+.+..-|++.+.
T Consensus 31 ~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edL--Ar~al~~k~~~e~~~~~l~~~~~ 108 (221)
T PF04012_consen 31 AIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDL--AREALQRKADLEEQAERLEQQLD 108 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888888888888888888888888887776544433332222111000 02344455555555555666665
Q ss_pred HHHHHHHHHHHHHHHHHhHhHhhhhh
Q 008232 521 NEKEKIKELQQCLARIQQDQKETEVR 546 (573)
Q Consensus 521 ~eK~Kl~~l~qel~qak~~q~q~E~~ 546 (573)
.....+.+|...+.+.+....+++.+
T Consensus 109 ~~~~~~~~l~~~l~~l~~kl~e~k~k 134 (221)
T PF04012_consen 109 QAEAQVEKLKEQLEELEAKLEELKSK 134 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554443
No 69
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.15 E-value=6.2 Score=41.85 Aligned_cols=117 Identities=21% Similarity=0.268 Sum_probs=60.8
Q ss_pred HHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHH
Q 008232 413 ELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCL 492 (573)
Q Consensus 413 ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~ 492 (573)
++..+++|++.-.++=+.-+. ++.+-..+.+.+..|.+...+-++....+..||.|.+++.+|++..+... .
T Consensus 17 ~~~~~~~E~~~Y~~fL~~l~~-~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~-------~ 88 (314)
T PF04111_consen 17 QLEQAEKERDTYQEFLKKLEE-ESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL-------E 88 (314)
T ss_dssp --------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 344445555544444333321 12233455666777777777777888888899999999999988744322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 493 EVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (573)
Q Consensus 493 e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak 537 (573)
++-+.|.+..+..-....|..-+++|...-+..+...+++|.+.+
T Consensus 89 ~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 89 ELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233445555555556666666667777766666666666665543
No 70
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.97 E-value=21 Score=42.65 Aligned_cols=129 Identities=24% Similarity=0.267 Sum_probs=85.0
Q ss_pred HHhhHHHHHHhhhhcccchhh---HHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hHHHHHH--HHHhhhhhhhhHHH
Q 008232 417 LRMEREETQRLKKGKQTLEDT---TMKRLSEMENALRKASGQVDRANAAVRRLETE-NAEIRAE--MEASKLSAAESVTT 490 (573)
Q Consensus 417 LR~Ekee~~rlkKeKq~lEe~---T~KrLsEmEnAl~kas~QldrAna~vrrLE~e-na~lr~E--mEAaKL~A~ES~~s 490 (573)
..+-+-|++||-.--+.+|.. +-|++.+++..|.++..++...+..+.-.-.+ +---++| -+|-+++.+.++.-
T Consensus 564 ~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~~~~~~~~~~k~~~~~~~~~elleea~Ree~~~t~e~ 643 (775)
T PF10174_consen 564 SEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLAKQQETVEATKIEENKRKRAELLEEALREEVSITEER 643 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHhhhHHHHHHHhhhhhHHHHH
Confidence 334466777777655555544 55899999999999999998877776643222 2222222 35556666666664
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhh
Q 008232 491 CLEVAKRE--------KKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEV 545 (573)
Q Consensus 491 c~e~~kke--------kk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~ 545 (573)
.+-.+.+. .+.-+.+.-++.+-.+++.|+..-+-++...|+.|..-.+.-..+|+
T Consensus 644 ~l~~s~q~~~~~~~~~~~~e~qleeL~~~l~k~~~Eld~l~~qL~ssq~~L~e~d~~L~~le~ 706 (775)
T PF10174_consen 644 ELAQSQQKLAQQEAQSSHLEKQLEELEAALEKLRQELDQLKAQLESSQQSLMERDQELNALEA 706 (775)
T ss_pred HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444333 23336788888888889999988888888888877765555444444
No 71
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.78 E-value=34 Score=35.92 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhcccccccccccccccccCCCCC
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLICLFPWFSTHKISTNIHCFPNMSL 571 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (573)
.-+.+.++-....++|..-++.|.+|..++.+ .+.++..--.-+||-|--+ ---|-|+|.+
T Consensus 187 ~N~~m~kei~~~re~i~el~e~I~~L~~eV~~---L~~~~~~~Re~iF~dvll~----rpKCTPDmdV 247 (258)
T PF15397_consen 187 ENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ---LQAQAQDPREVIFADVLLR----RPKCTPDMDV 247 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcchHHHhhHHHhcC----CCCCCCCchh
Confidence 34555666667777888888888888777655 3444443445677766333 3469999963
No 72
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=88.77 E-value=17 Score=36.34 Aligned_cols=108 Identities=23% Similarity=0.249 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVT-----TCLEVAKREKKCLKRLLAWEKQKAK 514 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~-----sc~e~~kkekk~lkkl~~WEkQK~~ 514 (573)
-=+-||+.+|.++...|-++-+..++++.+..++..+.+-=.-+|.-... --.+++.+.+.....+...+.|...
T Consensus 31 q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~ 110 (219)
T TIGR02977 31 LIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAA 110 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55789999999999999999999999999888887766543333322221 1234566777777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhh
Q 008232 515 LQEEIANEKEKIKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 515 LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~ 547 (573)
++.-+..-+.+|.+|++.+..++..+..+=+|-
T Consensus 111 ~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 111 VEETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888877776544443
No 73
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.68 E-value=35 Score=42.33 Aligned_cols=43 Identities=14% Similarity=0.338 Sum_probs=30.9
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 439 ~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
-.||..++..|.|.+.++..++..+.+.+..++++..+.+...
T Consensus 913 ~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e 955 (1293)
T KOG0996|consen 913 NEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTE 955 (1293)
T ss_pred HHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777777777777766553
No 74
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.66 E-value=6.4 Score=43.64 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHH----HHHhhHHHHHHhhhhcccchhhHHhhHHHHHHH
Q 008232 373 EIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELK----MLRMEREETQRLKKGKQTLEDTTMKRLSEMENA 448 (573)
Q Consensus 373 Emil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk----~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnA 448 (573)
.|.-.+..|+..|.+.+++- ++++. .+.-+++||. ..+.++...+++..|+|.++..+-+.|+.-+.-
T Consensus 154 ~l~~~~~~~i~~l~~~~~~l---~~~~~-----~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~ 225 (420)
T COG4942 154 ALNPARAERIDALKATLKQL---AAVRA-----EIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKK 225 (420)
T ss_pred HhhHHHHHHHHHHHHHHHHH---HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666655443 33443 3445677887 556667777888889999999888888888888
Q ss_pred HHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhh
Q 008232 449 LRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAE 486 (573)
Q Consensus 449 l~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~E 486 (573)
+..--.+=.+....+.++|.++|.-|..+||++-.+.+
T Consensus 226 l~eL~~~~~~L~~~Ias~e~~aA~~re~~aa~~aa~~~ 263 (420)
T COG4942 226 LEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAAR 263 (420)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777788888888888777777776655443
No 75
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.61 E-value=13 Score=34.83 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=51.2
Q ss_pred hHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 437 TTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA---ESVTTCLEVAKREKKCLKRLLAWEKQK 512 (573)
Q Consensus 437 ~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~---ES~~sc~e~~kkekk~lkkl~~WEkQK 512 (573)
..|.....++-.+.+....+++.+..+.+|+.+++++..|+.+++-... ....+-....|.++..+.|++.|-.++
T Consensus 49 r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~ 127 (151)
T PF11559_consen 49 RDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677778888888888888899999988888888776543322 223344455666666666666665554
No 76
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.38 E-value=11 Score=44.61 Aligned_cols=113 Identities=24% Similarity=0.308 Sum_probs=90.8
Q ss_pred HhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008232 426 RLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRL 505 (573)
Q Consensus 426 rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl 505 (573)
-|=+|=-..|..=+-||.|+|+.|+.+..+|+++.+-.-||...|.+++++-|...+.-..=-.-.-|..-||..-|-..
T Consensus 20 ~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy 99 (717)
T PF09730_consen 20 SLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY 99 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34445556677778999999999999999999999999999999999999888777776666777888888999999888
Q ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHh
Q 008232 506 LAWEKQKAKLQEEIA----------NEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 506 ~~WEkQK~~LQEEla----------~eK~Kl~~l~qel~qak~ 538 (573)
--.|-+.+-||.-++ .-|+-|..|.++....+.
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~ 142 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNS 142 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999988887554 445566666666555443
No 77
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.37 E-value=33 Score=35.33 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhh
Q 008232 511 QKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 511 QK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~ 547 (573)
.-..+++|+..-+.+|..|+.++...+.....+|...
T Consensus 210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 3334445555555555555555444444444444433
No 78
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.32 E-value=9.6 Score=43.70 Aligned_cols=100 Identities=17% Similarity=0.338 Sum_probs=69.7
Q ss_pred HHHhhHHHHHHhhhhcccchhhHH----------hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhh
Q 008232 416 MLRMEREETQRLKKGKQTLEDTTM----------KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA 485 (573)
Q Consensus 416 ~LR~Ekee~~rlkKeKq~lEe~T~----------KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ 485 (573)
.++|..--.+.|+|.+..|.+.-. -|--+|+++|...+..+++-..-..+|-.+|.+|++..|-.++++.
T Consensus 253 e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~ 332 (581)
T KOG0995|consen 253 EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGE 332 (581)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 444444444555555555555422 3556899999999999999999999999999999999999999887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 486 ESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCL 533 (573)
Q Consensus 486 ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel 533 (573)
+=- .+..++.+|+.||..-..++..|++++
T Consensus 333 dve------------------~mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 333 DVE------------------RMNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643 345555556666655555555555544
No 79
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.31 E-value=18 Score=34.79 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=37.7
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIA 520 (573)
Q Consensus 441 rLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla 520 (573)
.+..++.......+++......+..++.....+.+|+ .++.+..+......+.-+.+...+|++..
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~--------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (191)
T PF04156_consen 110 ELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEI--------------RELQKELQDSREEVQELRSQLERLQENLQ 175 (191)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333 22223333333444444555555566666
Q ss_pred HHHHHHHHHHHHHH
Q 008232 521 NEKEKIKELQQCLA 534 (573)
Q Consensus 521 ~eK~Kl~~l~qel~ 534 (573)
...+++..++..++
T Consensus 176 ~l~~~~~~~~~l~~ 189 (191)
T PF04156_consen 176 QLEEKIQELQELLE 189 (191)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666665555444
No 80
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=88.25 E-value=66 Score=38.64 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 514 KLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 514 ~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
.++++|..-..++..+.+.+.+++.+..+++
T Consensus 699 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 729 (908)
T COG0419 699 QLREELEELLKKLGEIEQLIEELESRKAELE 729 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 81
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=88.18 E-value=8.6 Score=43.90 Aligned_cols=108 Identities=22% Similarity=0.224 Sum_probs=70.6
Q ss_pred hhHHhhHHHHHHHHHhhhh-hhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 436 DTTMKRLSEMENALRKASG-QVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAK 514 (573)
Q Consensus 436 e~T~KrLsEmEnAl~kas~-QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~ 514 (573)
+...+||-||.|-+.-.-. .+++-...-++.| ++...+..-|++++-|.++...-+|..++.+...++++ |.+|+.
T Consensus 178 ~~~~~r~~e~Q~qv~qsl~~el~~i~~~~q~~e-qi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~--eqekiR 254 (591)
T KOG2412|consen 178 KEVKRRLLEEQNQVLQSLDTELQAIQREKQRKE-QIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQ--EQEKIR 254 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh--HHHHHH
Confidence 4466788899887654433 4444444444444 35555666677889999999999999999988888877 455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhh
Q 008232 515 LQEEIANEKEKIKELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 515 LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~ 548 (573)
+-||=..|++|-.+.+.+ +..+.-+..|.+..
T Consensus 255 ~~eekqeee~ke~e~~~~--k~~q~~~~~eek~a 286 (591)
T KOG2412|consen 255 AEEEKQEEERKEAEEQAE--KEVQDPKAHEEKLA 286 (591)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhcCchhcccccc
Confidence 666666666665554443 33344445554443
No 82
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=88.18 E-value=15 Score=41.61 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=74.9
Q ss_pred hHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 437 TTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQ 516 (573)
Q Consensus 437 ~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQ 516 (573)
-|.+.+.+|=.++..+=+ +|....-.-=-.+-.++.=.-.-+.+..+-.+.+.|.+.+...++..+.-++
T Consensus 397 ~t~~~i~~ml~~V~~ii~----------~Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~ 466 (507)
T PF05600_consen 397 QTAESIEEMLSAVEEIIS----------QLTNPRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQ 466 (507)
T ss_pred cCHHHHHHHHHHHHHHHH----------HhcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666555544333 3333333333345566666666677888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhccc
Q 008232 517 EEIANEKEKIKELQQCLARIQQDQKETEVRLICLFP 552 (573)
Q Consensus 517 EEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~~ 552 (573)
+|+....-||..| +++++++|+++|+-+--.|+
T Consensus 467 ~e~~~l~pkL~~l---~~~Tr~Lq~~iE~~ISk~y~ 499 (507)
T PF05600_consen 467 EEQQELEPKLDAL---VERTRELQKQIEADISKRYK 499 (507)
T ss_pred HHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHcC
Confidence 9999999998877 56899999999998766553
No 83
>PRK09039 hypothetical protein; Validated
Probab=88.10 E-value=9.1 Score=41.07 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=47.8
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHH-----HHHHhhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRA-----EMEASKLSA--AESVTTCLEVAKREKKCLKRLLAWEKQ 511 (573)
Q Consensus 439 ~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~-----EmEAaKL~A--~ES~~sc~e~~kkekk~lkkl~~WEkQ 511 (573)
+-+...++..|.....|++-|.+.--+|+.-.+.... |..++.|.+ .+.-+-..|.-..-...-..+.+++.|
T Consensus 73 ~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 73 RQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455556666666666666655555555554333221 111111110 000011111112222233345566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 008232 512 KAKLQEEIANEKEKIKELQQCLARIQQDQK 541 (573)
Q Consensus 512 K~~LQEEla~eK~Kl~~l~qel~qak~~q~ 541 (573)
.+.||.+|.+-+.+....+.+++..++.-+
T Consensus 153 la~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 153 LAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776666665555555555444333
No 84
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=87.90 E-value=31 Score=39.27 Aligned_cols=173 Identities=14% Similarity=0.141 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHH
Q 008232 371 KDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALR 450 (573)
Q Consensus 371 KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~ 450 (573)
=...|-+|..++.+++.+++..-+=-...++....+........+.|..|..++.. . ..++....+|.+....+.
T Consensus 12 l~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~--~---~~~~~i~~~l~~a~~e~~ 86 (593)
T PF06248_consen 12 LRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQ--S---EIENEIQPQLRDAAEELQ 86 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--h---hccchhHHHHHHHHHHHH
Confidence 34678899999999999998653333334444444444446667777777644422 2 246678888888888888
Q ss_pred hhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 451 KASGQVDRANAAVRRLETENAEIRAEMEASK-LSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKEL 529 (573)
Q Consensus 451 kas~QldrAna~vrrLE~ena~lr~EmEAaK-L~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l 529 (573)
....|+...+....-|+ ...++...++... .....---.|.+.+.+=+..|+.+..+..+....=. .-|.++..
T Consensus 87 ~L~~eL~~~~~~l~~L~-~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~---~Lk~e~~~- 161 (593)
T PF06248_consen 87 ELKRELEENEQLLEVLE-QLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILK---LLKDEYSE- 161 (593)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHH---HHHHHHHH-
Confidence 88888888888777766 4555555554443 111222334455555555555555444333211111 11122222
Q ss_pred HHHHHHHHhHhHhhhhhhhhccccccccc
Q 008232 530 QQCLARIQQDQKETEVRLICLFPWFSTHK 558 (573)
Q Consensus 530 ~qel~qak~~q~q~E~~~~~~~~~~~~~~ 558 (573)
+-..++.++...|..++-|=....
T Consensus 162 -----lr~~L~~~L~~~w~~lv~~~~~~~ 185 (593)
T PF06248_consen 162 -----LRENLQYQLSEEWERLVQWDSPSS 185 (593)
T ss_pred -----HHHHHHHHHHHHHHhheeecCCCc
Confidence 223345577789999999954433
No 85
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.68 E-value=39 Score=36.07 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH-----------HHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKK-----------CLKRLLAW 508 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk-----------~lkkl~~W 508 (573)
..+..|...-..-..+++.++..+-.|....+.|+.|.+-.+-...|-..-=++.+++=+. -.+++..-
T Consensus 151 ~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~ 230 (312)
T smart00787 151 ENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEEL 230 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666555443333311100111111111 12234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008232 509 EKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (573)
Q Consensus 509 EkQK~~LQEEla~eK~Kl~~l~qel~qak~~ 539 (573)
+.|...|...|.+-+.|+.+++.+++.++..
T Consensus 231 ~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~ 261 (312)
T smart00787 231 EEELQELESKIEDLTNKKSELNTEIAEAEKK 261 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555543
No 86
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.67 E-value=51 Score=39.08 Aligned_cols=164 Identities=20% Similarity=0.235 Sum_probs=85.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhh-hcccchhhHH---hhH
Q 008232 367 TDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKK-GKQTLEDTTM---KRL 442 (573)
Q Consensus 367 p~D~KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkK-eKq~lEe~T~---KrL 442 (573)
.||.--+-=-.||+||.||-.-|+ .+-.|||||=--=.-|+.-|-.-.+++++.-. =-|.+-++|+ ..+
T Consensus 574 kQdear~~~~~lvqqv~dLR~~L~-------~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQI 646 (961)
T KOG4673|consen 574 KQDEARERESMLVQQVEDLRQTLS-------KKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQI 646 (961)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHH
Confidence 345444445568888888877664 34467777743333333333333333433322 2355666676 566
Q ss_pred HHHHHHHHhhhhhhhh-hhHHHHHHhhhhHHHHHHHH----------Hhh--hhhhhhHHHHHHH-----HHHHHHHHHH
Q 008232 443 SEMENALRKASGQVDR-ANAAVRRLETENAEIRAEME----------ASK--LSAAESVTTCLEV-----AKREKKCLKR 504 (573)
Q Consensus 443 sEmEnAl~kas~Qldr-Ana~vrrLE~ena~lr~EmE----------AaK--L~A~ES~~sc~e~-----~kkekk~lkk 504 (573)
.-|+.+|.+++.-=+| -.+.-.||---.-++|.-.+ +-+ |...++--+|+++ .+-..+.-.|
T Consensus 647 E~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr 726 (961)
T KOG4673|consen 647 EALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNR 726 (961)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888776666 33334444432333332111 111 2223333344332 2222333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 505 LLAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (573)
Q Consensus 505 l~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak 537 (573)
+---++|-..+|+||...+..+.+|.++....|
T Consensus 727 ~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k 759 (961)
T KOG4673|consen 727 AAENRQEYLAAQEEADTLEGRANQLEVEIRELK 759 (961)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777888888877777776665544433
No 87
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=87.54 E-value=5.3 Score=47.33 Aligned_cols=115 Identities=26% Similarity=0.332 Sum_probs=77.5
Q ss_pred HHHHHhhhhcccchh----------hHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhh-----------------------
Q 008232 422 EETQRLKKGKQTLED----------TTMKRLSEMENALRKASGQVDRANAAVRRLET----------------------- 468 (573)
Q Consensus 422 ee~~rlkKeKq~lEe----------~T~KrLsEmEnAl~kas~QldrAna~vrrLE~----------------------- 468 (573)
++.+.++-+|..||. .++.+|.|+|.-|.....||+.++..-..+|.
T Consensus 596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~ 675 (769)
T PF05911_consen 596 EELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEA 675 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 344455555555554 47889999999999999999998887776666
Q ss_pred -----hhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 008232 469 -----ENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAW---EKQKAKLQE-EIANEKEKIKELQQCLARI 536 (573)
Q Consensus 469 -----ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~W---EkQK~~LQE-Ela~eK~Kl~~l~qel~qa 536 (573)
+...|..|++.-|..-.|..+-|.++-..-.+.-+....| +..+-.-|| ||++--.||++=|+.++-.
T Consensus 676 ~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sL 752 (769)
T PF05911_consen 676 EELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASL 752 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666677777777777644333333333333 444555566 8888888888888877654
No 88
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.29 E-value=58 Score=36.92 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=8.9
Q ss_pred hhhcHHHHHHHHhhHHHHH
Q 008232 407 LSNDLTELKMLRMEREETQ 425 (573)
Q Consensus 407 L~kd~~ELk~LR~Ekee~~ 425 (573)
|..-..++..|+.|.+...
T Consensus 244 L~~a~~~l~~Lq~El~~~~ 262 (522)
T PF05701_consen 244 LAEASAELESLQAELEAAK 262 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333445555555554433
No 89
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=87.29 E-value=21 Score=36.87 Aligned_cols=45 Identities=13% Similarity=0.301 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHh---hhhHHHHHHHHHhhhhhhh
Q 008232 442 LSEMENALRKASGQVDRANAAVRRLE---TENAEIRAEMEASKLSAAE 486 (573)
Q Consensus 442 LsEmEnAl~kas~QldrAna~vrrLE---~ena~lr~EmEAaKL~A~E 486 (573)
|..++..+..+..+++.|.....|.+ .+++--+.+++.++.....
T Consensus 99 ~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~ 146 (327)
T TIGR02971 99 VAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRT 146 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 44455555555555555555444432 3455556666666654433
No 90
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.93 E-value=62 Score=36.91 Aligned_cols=165 Identities=20% Similarity=0.258 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcHHHHHHHHhhHHHH---------------HHhhhhccc------
Q 008232 376 VTMLHQIKDLERQVKERKEWAHQ-KAMQAARKLSNDLTELKMLRMEREET---------------QRLKKGKQT------ 433 (573)
Q Consensus 376 l~Lv~rv~eLq~qlkewtdWA~q-KvmQaa~rL~kd~~ELk~LR~Ekee~---------------~rlkKeKq~------ 433 (573)
-.|=.++.+++.++....+|... --.+|..-|.+-..++..|+.-.+++ +.|+.+-+.
T Consensus 168 ~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy 247 (569)
T PRK04778 168 DELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGY 247 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC
Confidence 35677888888888888888642 23333333333333333333333333 233333333
Q ss_pred -chh-hHHhhHHHHHHHHHh-----hhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008232 434 -LED-TTMKRLSEMENALRK-----ASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLL 506 (573)
Q Consensus 434 -lEe-~T~KrLsEmEnAl~k-----as~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~ 506 (573)
|+. +--+++..|++.|.. ...+|+.|...+..++.++..|=.-||... .+-..+-+.-.+.-+.+.
T Consensus 248 ~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~-------~A~~~vek~~~~l~~~l~ 320 (569)
T PRK04778 248 HLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREV-------KARKYVEKNSDTLPDFLE 320 (569)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHH
Confidence 332 345888888888888 567888899999999888887766555432 122233344444555556
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhHhHhhhhhh
Q 008232 507 AWEKQKAKLQEEIANEKEK----------IKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 507 ~WEkQK~~LQEEla~eK~K----------l~~l~qel~qak~~q~q~E~~~ 547 (573)
+-+.|-..|..||..-++. +..++++|..+++..++++.++
T Consensus 321 ~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i 371 (569)
T PRK04778 321 HAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERI 371 (569)
T ss_pred HHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665 6666666666666666555444
No 91
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.83 E-value=34 Score=38.42 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=43.1
Q ss_pred hhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 452 ASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQ 531 (573)
Q Consensus 452 as~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~q 531 (573)
|+-|+|.-+..+|-||.||.++|-..---| ..|-++..-.++++..|.+---|-+-.|++-...-.+|.+.|+
T Consensus 295 asle~Enlqmr~qqleeentelRs~~arlk-------sl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ 367 (502)
T KOG0982|consen 295 ASLEKENLQMRDQQLEEENTELRSLIARLK-------SLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQE 367 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666667788888888888886532222 2344444444555555555555555555554444445554444
Q ss_pred HHHH
Q 008232 532 CLAR 535 (573)
Q Consensus 532 el~q 535 (573)
+-..
T Consensus 368 ekea 371 (502)
T KOG0982|consen 368 EKEA 371 (502)
T ss_pred hhHH
Confidence 4333
No 92
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.28 E-value=23 Score=40.97 Aligned_cols=87 Identities=25% Similarity=0.401 Sum_probs=47.6
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhh------hhhhhHHHHHHHHHHHHHHHHHH-HHHHHH
Q 008232 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKL------SAAESVTTCLEVAKREKKCLKRL-LAWEKQ 511 (573)
Q Consensus 439 ~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL------~A~ES~~sc~e~~kkekk~lkkl-~~WEkQ 511 (573)
+-.+.+|+..+..-..++.+....+.+.+.++.++.+|+.--|- .+-+-.+-.+.+......-+..| +-||+=
T Consensus 341 ~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~ 420 (594)
T PF05667_consen 341 ESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKH 420 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555666666666666666666555543221 12233333344444444444444 358888
Q ss_pred HHHHHHHHHHHHHH
Q 008232 512 KAKLQEEIANEKEK 525 (573)
Q Consensus 512 K~~LQEEla~eK~K 525 (573)
+.-|-+|+...|.+
T Consensus 421 R~pL~~e~r~lk~~ 434 (594)
T PF05667_consen 421 RAPLIEEYRRLKEK 434 (594)
T ss_pred HhHHHHHHHHHHHH
Confidence 88877777777643
No 93
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.15 E-value=8.5 Score=38.77 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhh
Q 008232 508 WEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 508 WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~ 547 (573)
-+.|...|++||+.-+.++..|..++.. .+++++-+|
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~---~~~~~~~~w 173 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDD---KQRTIIMQW 173 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 4555566666666666666666555443 334444444
No 94
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.09 E-value=43 Score=37.42 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhh
Q 008232 380 HQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRA 459 (573)
Q Consensus 380 ~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrA 459 (573)
+|++..+.++..- ++++-+.-.++++-..+||.|+.|... +..-|.+.++.+.+.+.+++..
T Consensus 38 ~~l~q~q~ei~~~----~~~i~~~~~~~~kL~~~lk~~e~~i~~--------------~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 38 KQLKQIQKEIAAL----EKKIREQQDQRAKLEKQLKSLETEIAS--------------LEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhHHHHHHhhHHHH
Confidence 4444444444321 234444444555555555555555542 3344556666666666666666
Q ss_pred hHHHHHHhhhh
Q 008232 460 NAAVRRLETEN 470 (573)
Q Consensus 460 na~vrrLE~en 470 (573)
+.....|+.+-
T Consensus 100 ~~~l~~l~~q~ 110 (420)
T COG4942 100 NARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 95
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=85.65 E-value=40 Score=33.53 Aligned_cols=109 Identities=15% Similarity=0.173 Sum_probs=75.0
Q ss_pred HHhhHHHHH--HHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 438 TMKRLSEME--NALRKASGQVDRANAAVRRLETENAEIRAEMEASKLS-----AAESVTTCLEVAKREKKCLKRLLAWEK 510 (573)
Q Consensus 438 T~KrLsEmE--nAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~-----A~ES~~sc~e~~kkekk~lkkl~~WEk 510 (573)
+...|+..| .+|.++=.++-.+.-.+.++... -+.-|..+|. -.....|+..++.+-.+.+-..+..++
T Consensus 47 ~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~----~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~ 122 (216)
T cd07627 47 TLEALSSLELSKSLSDLLAALAEVQKRIKESLER----QALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAES 122 (216)
T ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666 45555555554444444444443 1222333332 134556777888899999999999999
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 511 QKAKLQEEIANE-------KEKIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 511 QK~~LQEEla~e-------K~Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
+-.+++..+... ..|+.++..++..++..+.+++.+|.-+
T Consensus 123 ~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~i 169 (216)
T cd07627 123 ELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEV 169 (216)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888876 4799999999999999999998887643
No 96
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.62 E-value=67 Score=38.04 Aligned_cols=152 Identities=22% Similarity=0.321 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhcHHHHHHHHhhHHHHHH--------hhhhcccchhhHH
Q 008232 371 KDEIVVTMLHQIKDLERQVKERKEWA---HQKAMQAARKLSNDLTELKMLRMEREETQR--------LKKGKQTLEDTTM 439 (573)
Q Consensus 371 KdEmil~Lv~rv~eLq~qlkewtdWA---~qKvmQaa~rL~kd~~ELk~LR~Ekee~~r--------lkKeKq~lEe~T~ 439 (573)
..+.+..|-.-++.|+.+|+--.-=- .+++.+-+.==..-+.||..||+|-|+.|. .++|||+++ ...
T Consensus 416 ~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~-~LE 494 (697)
T PF09726_consen 416 EPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQ-QLE 494 (697)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 45677788888888888876443211 122222211111335678888888887765 555555543 122
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLS---AAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQ 516 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~---A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQ 516 (573)
|||.|-..+-..+- ..|..|...-++|=|+|... |.-+-.-|.|..|. |.+-||.+.-+|+
T Consensus 495 krL~eE~~~R~~lE----------kQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~------r~~~lE~E~~~lr 558 (697)
T PF09726_consen 495 KRLAEERRQRASLE----------KQLQEERKARKEEEEKAARALAQAQATRQECAESCRQ------RRRQLESELKKLR 558 (697)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHH------HHHHHHHHHHHHH
Confidence 34433222211111 12222222222222222221 11122245554433 5677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 008232 517 EEIANEKEKIKELQQCLARIQQD 539 (573)
Q Consensus 517 EEla~eK~Kl~~l~qel~qak~~ 539 (573)
-||..-.+-+-.+.+++++..+.
T Consensus 559 ~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 559 RELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888766665
No 97
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=85.57 E-value=79 Score=41.17 Aligned_cols=160 Identities=24% Similarity=0.327 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhH------------------HhhHHH
Q 008232 383 KDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTT------------------MKRLSE 444 (573)
Q Consensus 383 ~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T------------------~KrLsE 444 (573)
..+++.+++-.+=|+.++.+....|-.--.-+-+|=.|++ .||+--..+|+++ -+||.+
T Consensus 564 ~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd---~y~e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~l~q 640 (1822)
T KOG4674|consen 564 KTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERD---MYKELLAELEDSHQLKPNSSALDQTEAPRAKEKRLRQ 640 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhcccccccCCCCchhhcccccchhHHHHHHH
Confidence 3455566666666666666655555444444444444443 4555556667774 578888
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHH
Q 008232 445 MENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLK-RL-------LAWEKQKAKLQ 516 (573)
Q Consensus 445 mEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lk-kl-------~~WEkQK~~LQ 516 (573)
+|++|+... .-++...+.|+-++.-++.||.+-+..= +..++-+..++..-+-|. .+ ..-+.+...||
T Consensus 641 Le~~le~~~---~E~~~~~~~l~e~~~~l~~ev~~ir~~l-~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~ 716 (1822)
T KOG4674|consen 641 LENELESYK---KEKRENLKKLQEDFDSLQKEVTAIRSQL-EKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQ 716 (1822)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888443 2234455666666666666666544332 222222222222222221 11 12336777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhh
Q 008232 517 EEIANEKEKIKELQQCLARIQQDQKETEVRLIC 549 (573)
Q Consensus 517 EEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~ 549 (573)
.=|..+++++..+-++|.+++..-+.+++...-
T Consensus 717 ~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~ 749 (1822)
T KOG4674|consen 717 STISKQEQTVHTLSQELLSANEKLEKLEAELSN 749 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 889999999999999998888888888776543
No 98
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=85.41 E-value=19 Score=36.80 Aligned_cols=99 Identities=23% Similarity=0.295 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEl 519 (573)
-.+-+|+..|.++...+.++-+..++||.+...++.+++-=.=+|-.....=-|.+- ++.|-+.++-|.+..-++.++
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LA--r~al~~~~~le~~~~~~~~~~ 108 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLA--REALEEKQSLEDLAKALEAEL 108 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 567799999999999999999999999999998888876433333222221111111 233444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhHh
Q 008232 520 ANEKEKIKELQQCLARIQQDQ 540 (573)
Q Consensus 520 a~eK~Kl~~l~qel~qak~~q 540 (573)
......+.+|...+.+..+..
T Consensus 109 ~~~~~~~~~l~~~~~~Le~Ki 129 (225)
T COG1842 109 QQAEEQVEKLKKQLAALEQKI 129 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555444444444444333333
No 99
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.40 E-value=43 Score=33.66 Aligned_cols=83 Identities=11% Similarity=0.227 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEl 519 (573)
.|+..+...+.....+++.....+.++..+++..+..+. .......+..+...+....+..++.+...++..+
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 142 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS-------ASQDLVESRQEQLEELQNELEERKQRLSQLQSQL 142 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555544 1111222233333334445556666666677777
Q ss_pred HHHHHHHHHH
Q 008232 520 ANEKEKIKEL 529 (573)
Q Consensus 520 a~eK~Kl~~l 529 (573)
..-+..+.+.
T Consensus 143 ~~~r~~l~~~ 152 (302)
T PF10186_consen 143 ARRRRQLIQE 152 (302)
T ss_pred HHHHHHHHHH
Confidence 7766665543
No 100
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.16 E-value=83 Score=36.78 Aligned_cols=88 Identities=19% Similarity=0.347 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEl 519 (573)
-||.|+|..++....+. .+...|=+.|+-=|.-++..++.=.++...=.+.-.+|...-.+|+-|-.-|
T Consensus 122 erL~ELE~~le~~~e~~-----------~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~l 190 (617)
T PF15070_consen 122 ERLAELEEELERLQEQQ-----------EDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSAL 190 (617)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHH
Confidence 45666666655543322 2233344556666666666666666666666666666666666665555555
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008232 520 ANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 520 a~eK~Kl~~l~qel~qak~ 538 (573)
-.|.+-..+|...|.+.++
T Consensus 191 q~Eq~~~keL~~kl~~l~~ 209 (617)
T PF15070_consen 191 QSEQHVKKELQKKLGELQE 209 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444443
No 101
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.15 E-value=80 Score=36.49 Aligned_cols=55 Identities=24% Similarity=0.383 Sum_probs=26.9
Q ss_pred HHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHH
Q 008232 417 LRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRA 475 (573)
Q Consensus 417 LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~ 475 (573)
|+..+++.+.|+.+.+.+... ...+.........|.+.+...++.||.++..+..
T Consensus 180 L~~~~ee~e~L~~~~kel~~~----~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~q 234 (546)
T PF07888_consen 180 LEQEEEEMEQLKQQQKELTES----SEELKEERESLKEQLAEARQRIRELEEDIKTLTQ 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666665554444332 1122223333444555555666666655555443
No 102
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=85.07 E-value=73 Score=40.28 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=20.8
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHH
Q 008232 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEM 477 (573)
Q Consensus 439 ~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~Em 477 (573)
...+.+-+.++..+..+++++...++..+....+.+.+.
T Consensus 792 ~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l 830 (1353)
T TIGR02680 792 HRRAAEAERQAESAERELARAARKAAAAAAAWKQARREL 830 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555544443
No 103
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=84.91 E-value=12 Score=41.79 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHhhhhhhhh
Q 008232 519 IANEKEKIKELQQCLARIQQDQKETEVRLIC 549 (573)
Q Consensus 519 la~eK~Kl~~l~qel~qak~~q~q~E~~~~~ 549 (573)
|-+--+||.++.+.|..++.+-.+---||+.
T Consensus 392 lDdVD~kIleak~al~evtt~lrErl~RWqQ 422 (575)
T KOG4403|consen 392 LDDVDHKILEAKSALSEVTTLLRERLHRWQQ 422 (575)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344578999999999999888888888873
No 104
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=84.91 E-value=19 Score=35.61 Aligned_cols=106 Identities=17% Similarity=0.251 Sum_probs=75.3
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 443 SEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANE 522 (573)
Q Consensus 443 sEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~e 522 (573)
.-++.+|+....+|.++..++-+..+..-.+.++++.+.-.+.+-...-..+++++...|=+. +=.+|.-+++++...
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~--al~~k~~~e~~~~~l 103 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLARE--ALQRKADLEEQAERL 103 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHHHHH
Confidence 346677777777777777777777777777777777777777777777777777777666543 344566677777777
Q ss_pred HHHHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 523 KEKIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 523 K~Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
+.-+.++...+.+.+....+++.++.-+
T Consensus 104 ~~~~~~~~~~~~~l~~~l~~l~~kl~e~ 131 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLKEQLEELEAKLEEL 131 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777776543
No 105
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=84.87 E-value=76 Score=36.11 Aligned_cols=118 Identities=25% Similarity=0.309 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhhcHHHHHH----HHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHH---------
Q 008232 397 HQKAMQAARKLSNDLTELKM----LRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAV--------- 463 (573)
Q Consensus 397 ~qKvmQaa~rL~kd~~ELk~----LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~v--------- 463 (573)
||=.+...++|-....||-- .--||-++++.=+--|..=.+|-|.|-|-.++=.-..-||.+-++--
T Consensus 357 QqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 357 QQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44455566666665555531 12244455444444455555678888877766555555565554433
Q ss_pred ----------HHHhhhhHHHHHHHHHhhhhh----hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 464 ----------RRLETENAEIRAEMEASKLSA----AE-SVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIA 520 (573)
Q Consensus 464 ----------rrLE~ena~lr~EmEAaKL~A----~E-S~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla 520 (573)
+=||++.+..++|+|--.|+- .| +.+|-++++||||++.. .+---||+|+-
T Consensus 437 eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~E------qefLslqeEfQ 502 (527)
T PF15066_consen 437 EIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETRE------QEFLSLQEEFQ 502 (527)
T ss_pred HHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 457888888899888877763 33 44488999999998753 34455666653
No 106
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=84.56 E-value=78 Score=35.85 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=34.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 367 TDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQA 403 (573)
Q Consensus 367 p~D~KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQa 403 (573)
..+.-+.+|.....++..|+.+|.+-+.++.+++.++
T Consensus 245 ~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~ 281 (582)
T PF09731_consen 245 SESDLNSLIAHAKERIDALQKELAELKEEEEEELERA 281 (582)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999988877
No 107
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=84.53 E-value=32 Score=40.05 Aligned_cols=67 Identities=12% Similarity=0.222 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhH--HhhHHHHHHHHHhhhhhhhhhhHHHHHHh
Q 008232 393 KEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTT--MKRLSEMENALRKASGQVDRANAAVRRLE 467 (573)
Q Consensus 393 tdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T--~KrLsEmEnAl~kas~QldrAna~vrrLE 467 (573)
.+|=++++-+.-++|..--.+|...|.+..... .+..+ ..+|++++..|..+..+...|.+..+.++
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~--------~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLM--------GNNATLATQQLAELNTELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--------cCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444444444444333221 12222 26888888888887777766666555444
No 108
>PRK01156 chromosome segregation protein; Provisional
Probab=84.36 E-value=54 Score=38.98 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008232 509 EKQKAKLQEEIANEKEKIKELQQ 531 (573)
Q Consensus 509 EkQK~~LQEEla~eK~Kl~~l~q 531 (573)
+++...++++|..-+.++.++..
T Consensus 701 ~~~i~~l~~~~~~l~eel~~~~~ 723 (895)
T PRK01156 701 ESTIEILRTRINELSDRINDINE 723 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 109
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=83.99 E-value=2.1 Score=32.19 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHhcCcHHHhhhh
Q 008232 170 GMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSI 204 (573)
Q Consensus 170 GLVafL~~~fP~LS~~dAm~yLLlADadLl~A~a~ 204 (573)
.+|..|++.||.++.....++|..++.|+..|+.+
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~ 37 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDA 37 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 57889999999999999999999999999998764
No 110
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=83.91 E-value=20 Score=43.68 Aligned_cols=165 Identities=16% Similarity=0.217 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHH---HHh
Q 008232 375 VVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENA---LRK 451 (573)
Q Consensus 375 il~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnA---l~k 451 (573)
+-+|-..++-|+.||.|-+| -..|--.-|---++|++.||+|-+|-+-.++--..-=+.+--=-.-||.+ -+-
T Consensus 179 lAdle~kir~LrqElEEK~e----nll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~yke 254 (1195)
T KOG4643|consen 179 LADLEKKIRTLRQELEEKFE----NLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKE 254 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccch
Confidence 45667788888888888773 33444444555567778888887765443321100000000000001100 112
Q ss_pred hhhhhhhhhHHHHHHhhhhHHHHHHHHH--hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 452 ASGQVDRANAAVRRLETENAEIRAEMEA--SKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKEL 529 (573)
Q Consensus 452 as~QldrAna~vrrLE~ena~lr~EmEA--aKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l 529 (573)
+.+.+|+-.+.|-.|+-.|+-|-.|.|- +.|+-.+.-.--.... +.+.-..++-.-++.|..+.++|+.+|
T Consensus 255 rlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tle-------seiiqlkqkl~dm~~erdtdr~kteeL 327 (1195)
T KOG4643|consen 255 RLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLE-------SEIIQLKQKLDDMRSERDTDRHKTEEL 327 (1195)
T ss_pred hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChH-------HHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 2344555666677777777766554432 2222221111000000 011222334456677888899999999
Q ss_pred HHHHHHHHhHhHhhhhhhhhc
Q 008232 530 QQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 530 ~qel~qak~~q~q~E~~~~~~ 550 (573)
+.|-.+...++.|+-+.|--+
T Consensus 328 ~eEnstLq~q~eqL~~~~ell 348 (1195)
T KOG4643|consen 328 HEENSTLQVQKEQLDGQMELL 348 (1195)
T ss_pred HHHHHHHHHHHHHhhhhhhHh
Confidence 999999999999998888655
No 111
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.22 E-value=61 Score=33.66 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 008232 471 AEIRAEMEASKLSAAESVTTCLEVAKREKKC 501 (573)
Q Consensus 471 a~lr~EmEAaKL~A~ES~~sc~e~~kkekk~ 501 (573)
..|-.||..||-+...-.....++-.+.++.
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l 122 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444444444444443333
No 112
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=83.15 E-value=2.4 Score=31.90 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHhcCcHHHhhhh
Q 008232 169 AGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSI 204 (573)
Q Consensus 169 ~GLVafL~~~fP~LS~~dAm~yLLlADadLl~A~a~ 204 (573)
...|..|+..||.++...+.++|..++.|+..|+..
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~ 38 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINN 38 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 467889999999999999999999999999998864
No 113
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.03 E-value=19 Score=41.48 Aligned_cols=17 Identities=6% Similarity=0.165 Sum_probs=8.4
Q ss_pred CCCchhHHHHHHHHHHH
Q 008232 367 TDDQKDEIVVTMLHQIK 383 (573)
Q Consensus 367 p~D~KdEmil~Lv~rv~ 383 (573)
-++...+.|.+-|..+-
T Consensus 163 ~~~~~~~~l~~Ai~~Ll 179 (650)
T TIGR03185 163 NPDRLASLLKEAIEVLL 179 (650)
T ss_pred ccccchHHHHHHHHHHh
Confidence 34555555555544443
No 114
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=82.92 E-value=68 Score=35.30 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhh
Q 008232 511 QKAKLQEEIANEKEKIKELQQCLARIQQDQKET 543 (573)
Q Consensus 511 QK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~ 543 (573)
+..-.+++|.+-+..|..++.+|++++......
T Consensus 285 ~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 285 QLAKVKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334566667766777777777777666655443
No 115
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=82.89 E-value=36 Score=35.29 Aligned_cols=50 Identities=22% Similarity=0.344 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhh
Q 008232 498 EKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLIC 549 (573)
Q Consensus 498 ekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~ 549 (573)
..+...+++.|+..|..-+++- .++.+ ...++..+...+.+++.|..|.-
T Consensus 179 ~e~a~~~~q~W~~kK~~e~~~~-r~~~~-~~~~~~~~e~~eRk~~ae~A~~~ 228 (264)
T PF13904_consen 179 QEEAKQRYQEWERKKKEEQQQK-REEER-EKEQQKQQEEQERKEQAEEAFQK 228 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456679999999987644332 22222 22233444455666777888876
No 116
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=82.79 E-value=1.3e+02 Score=37.05 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 498 EKKCLKRLLAWEKQKAKLQEEIANEKEKIK 527 (573)
Q Consensus 498 ekk~lkkl~~WEkQK~~LQEEla~eK~Kl~ 527 (573)
-...+..+..|..+...|++++.....++.
T Consensus 368 ~~~~~~~l~~~~~~l~~l~~~~~~~~~~l~ 397 (1047)
T PRK10246 368 WRAQFSQQTSDREQLRQWQQQLTHAEQKLN 397 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666655555555
No 117
>PRK10698 phage shock protein PspA; Provisional
Probab=82.78 E-value=34 Score=34.69 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVT-----TCLEVAKREKKCLKRLLAWEKQKAK 514 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~-----sc~e~~kkekk~lkkl~~WEkQK~~ 514 (573)
-=+-|||.+|.++...|-++-+.-.+++.+...+..+.+-=.-+|--... =-.+++.+.+.+..++...+.|..-
T Consensus 31 q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~ 110 (222)
T PRK10698 31 LMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTL 110 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999998888888888888888887777665443333332222 1245566667777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhh
Q 008232 515 LQEEIANEKEKIKELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 515 LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~ 548 (573)
.+.-+..-+.++.+|+..+.+++..++.+=+|-+
T Consensus 111 ~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~ 144 (222)
T PRK10698 111 VDETLARMKKEIGELENKLSETRARQQALMLRHQ 144 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777788888888777777776655543
No 118
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=82.55 E-value=5.5 Score=33.69 Aligned_cols=52 Identities=35% Similarity=0.371 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHH
Q 008232 399 KAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (573)
Q Consensus 399 KvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmE 478 (573)
+.=+++|+++.-..++|+|+.|++. +..||-.|-....+|-.|+..+++|.+
T Consensus 13 rLd~~~rk~~~~~~~~k~L~~ERd~----------------------------~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 13 RLDSLTRKNSVHEIENKRLRRERDS----------------------------AERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999982 234455555666677777777777744
No 119
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=82.44 E-value=1.3e+02 Score=36.95 Aligned_cols=56 Identities=7% Similarity=-0.006 Sum_probs=23.6
Q ss_pred HHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 008232 414 LKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETE 469 (573)
Q Consensus 414 Lk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~e 469 (573)
+..++...++++...+.-+...+.+.+.+.+...++..+.++++.+......++.+
T Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 746 (1047)
T PRK10246 691 IQQLTPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQR 746 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333322233333344445555555555555444444444433333
No 120
>PRK12704 phosphodiesterase; Provisional
Probab=82.17 E-value=96 Score=35.41 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=44.1
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008232 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWE 509 (573)
Q Consensus 439 ~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WE 509 (573)
.++|...|+.|.+-..+||+-...+.+.|.+....+++++.-+-...+--..+.++.......|.+.-.+-
T Consensus 81 e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt 151 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLT 151 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55677777777777777777766666666666655555555554445555556666666666666654443
No 121
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=82.17 E-value=32 Score=31.83 Aligned_cols=97 Identities=25% Similarity=0.317 Sum_probs=65.5
Q ss_pred chhhHHhhHHHHHHHHHhhhhhh------hhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008232 434 LEDTTMKRLSEMENALRKASGQV------DRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLA 507 (573)
Q Consensus 434 lEe~T~KrLsEmEnAl~kas~Ql------drAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~ 507 (573)
.+|-..|||.-.=..+.+..... +.......++..+.+.+.-.|.-+++. .++-++ -.+.
T Consensus 13 ~~dr~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~--------~~~n~~------e~e~ 78 (139)
T PF05615_consen 13 GDDRPLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLI--------LEMNKR------EREN 78 (139)
T ss_pred cCchhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH------HHHH
Confidence 35555555555544555554432 555666666666666555554443332 223333 4578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 508 WEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 508 WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
|+.....+.++|...|.+|.+|..+|..++...++-+
T Consensus 79 Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~ 115 (139)
T PF05615_consen 79 YEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKE 115 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998877655
No 122
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=81.47 E-value=0.47 Score=56.33 Aligned_cols=168 Identities=23% Similarity=0.313 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHH-HHHHhhHHHHHHhhhhcccchhhHH---hhHHHHHHHHH
Q 008232 375 VVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTEL-KMLRMEREETQRLKKGKQTLEDTTM---KRLSEMENALR 450 (573)
Q Consensus 375 il~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~EL-k~LR~Ekee~~rlkKeKq~lEe~T~---KrLsEmEnAl~ 450 (573)
..+|-.+|.+|+.+|-|=.+=+ .-++.-++|.-.+.+.| .-|++|++-++.+.+.|+.||.... -||.|+|.+-.
T Consensus 660 kr~le~~i~~l~~eleE~~~~~-~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~ 738 (859)
T PF01576_consen 660 KRKLEAEIQQLEEELEEEQSEA-EAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSAL 738 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3345556666666655433211 11222223333333333 3477888999999999999999855 79999998654
Q ss_pred hhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 451 KASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQ 530 (573)
Q Consensus 451 kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~ 530 (573)
+. ....|.+||+.+.+|-.++++-...-.++..+....=+|-|...-.+.-=-++-.-+||.+..-..||..+.
T Consensus 739 ~~------~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~k 812 (859)
T PF01576_consen 739 KG------GKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLK 812 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc------cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 235677777777777777777766666666655555554444332222222333456677767777777777
Q ss_pred HHHHHHHhHhHhhhhhhhh
Q 008232 531 QCLARIQQDQKETEVRLIC 549 (573)
Q Consensus 531 qel~qak~~q~q~E~~~~~ 549 (573)
+++..+.....+..++.|-
T Consensus 813 rq~eeaEe~~~~~~~k~Rk 831 (859)
T PF01576_consen 813 RQLEEAEEEASRNLAKYRK 831 (859)
T ss_dssp ------------------S
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 7777666655555555543
No 123
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.36 E-value=1.4e+02 Score=36.51 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=61.3
Q ss_pred hhcccCCCcccC--CCCCCC-----------CchhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----
Q 008232 351 LSKMRDLNIDEN--LETITD-----------DQKDEIVVTML--HQIKDLERQVKERKEWAHQKAMQAARKLSND----- 410 (573)
Q Consensus 351 ~~~~~~~~~D~~--l~~vp~-----------D~KdEmil~Lv--~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd----- 410 (573)
+....|++||-= ..++|+ +.|-+++.+|+ .+...+...+++...++..++-....++.-.
T Consensus 132 i~~llGld~~~F~~~~~l~Qg~~~~fl~a~~~eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 211 (1042)
T TIGR00618 132 IHDLLKLDYKTFTRVVLLPQGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTP 211 (1042)
T ss_pred HHHHhCCCHHHHhhheeecccchHHHHhCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCH
Confidence 445556776632 144444 34555555554 4556677777777777777776666655421
Q ss_pred ------HHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHH
Q 008232 411 ------LTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAE 476 (573)
Q Consensus 411 ------~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~E 476 (573)
.+++..|.+..++.....+..+. .-....++.++..++.....++..+......++.+...+...
T Consensus 212 e~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (1042)
T TIGR00618 212 CMPDTYHERKQVLEKELKHLREALQQTQQ-SHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEET 282 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233333332222222221111 011234455555555555555555555555555555444433
No 124
>PF13166 AAA_13: AAA domain
Probab=80.46 E-value=1.2e+02 Score=35.00 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=19.1
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 446 ENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 446 EnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
...+......++..|+.+.....+...+..+.+.++
T Consensus 362 ~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~ 397 (712)
T PF13166_consen 362 NEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELK 397 (712)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555566665555555555555544444
No 125
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=80.45 E-value=11 Score=40.69 Aligned_cols=94 Identities=26% Similarity=0.378 Sum_probs=74.3
Q ss_pred HHhhhcHHHHHHHHhhHHHHH-HhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhh
Q 008232 405 RKLSNDLTELKMLRMEREETQ-RLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLS 483 (573)
Q Consensus 405 ~rL~kd~~ELk~LR~Ekee~~-rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~ 483 (573)
+|+++-+.||..+-.|||+++ +||-|.+.|| --++.||.+|..|-+|.|+-.++
T Consensus 8 ~ri~~li~~la~~~~~~e~~~~~~~~~~~~~e-------------------------~~~~~l~~~~~~~~~~~~~~~~q 62 (328)
T PF15369_consen 8 RRIANLIKELARVSEEKEVTEERLKAEQESFE-------------------------KKIRQLEEQNELIIKEREDLQQQ 62 (328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHhHHHHHHHHHHHHH
Confidence 688888889999999999764 6666666665 23567888999999999988644
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 484 AAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 484 A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
-.-|||++. +-|.=|+.+..||..---+|.++....+++=
T Consensus 63 ----yrecqell~-----------------lyq~ylseqq~kl~~s~~~l~~~~~~~q~vs 102 (328)
T PF15369_consen 63 ----YRECQELLS-----------------LYQKYLSEQQEKLTMSLSELSAARMKEQQVS 102 (328)
T ss_pred ----HHHHHHHHH-----------------HHHHHHHHHHHHHhcCHHHhhhhhhhhccCC
Confidence 466998874 6777888999999998889998888877753
No 126
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.21 E-value=1.5e+02 Score=36.02 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=19.8
Q ss_pred hHHHHHHHHH-hhhhhhhhhhHHHHHHhhhhHHHHHHHHHh
Q 008232 441 RLSEMENALR-KASGQVDRANAAVRRLETENAEIRAEMEAS 480 (573)
Q Consensus 441 rLsEmEnAl~-kas~QldrAna~vrrLE~ena~lr~EmEAa 480 (573)
|-.|||.|-+ --..|-.|-.--+-+|-..++.|..|+|+-
T Consensus 409 RqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletL 449 (1118)
T KOG1029|consen 409 RQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETL 449 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554422 223444444444555556666666666653
No 127
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=79.96 E-value=77 Score=34.34 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhhhh
Q 008232 524 EKIKELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 524 ~Kl~~l~qel~qak~~q~q~E~~~~ 548 (573)
..+.+++.++.+++....+++..|.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666666666666666663
No 128
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=79.92 E-value=74 Score=32.40 Aligned_cols=144 Identities=26% Similarity=0.366 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhh---HHHHHHHHHhhhh
Q 008232 378 MLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKR---LSEMENALRKASG 454 (573)
Q Consensus 378 Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~Kr---LsEmEnAl~kas~ 454 (573)
|=+|++|.|.++- |-+.-+-.-++-|+.+|-+-+ ........|.++...| |..-||.|.....
T Consensus 15 LKqQLke~q~E~~-----------~K~~Eiv~Lr~ql~e~~~~l~---~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~ 80 (202)
T PF06818_consen 15 LKQQLKESQAEVN-----------QKDSEIVSLRAQLRELRAELR---NKESQIQELQDSLRTKQLELEVCENELQRKKN 80 (202)
T ss_pred HHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhC
Confidence 4566777766652 222223333333444433333 2222334445544433 3344677777777
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHh--------hhhhhhhHHH-------HHHHHHHHHHHHHHHHHHH-----HHHHH
Q 008232 455 QVDRANAAVRRLETENAEIRAEMEAS--------KLSAAESVTT-------CLEVAKREKKCLKRLLAWE-----KQKAK 514 (573)
Q Consensus 455 QldrAna~vrrLE~ena~lr~EmEAa--------KL~A~ES~~s-------c~e~~kkekk~lkkl~~WE-----kQK~~ 514 (573)
+.+.=.-.+..||.|++.||.+...+ .+..++-+.. ...-++++-..|+.=..-| .|..-
T Consensus 81 Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~ 160 (202)
T PF06818_consen 81 EAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSS 160 (202)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 66666667888999999999988876 2222222221 1222444444443333322 23334
Q ss_pred HHHHH---HHHHHHHHHHHHHHHH
Q 008232 515 LQEEI---ANEKEKIKELQQCLAR 535 (573)
Q Consensus 515 LQEEl---a~eK~Kl~~l~qel~q 535 (573)
+..|= .+||+|+-.-|++|.+
T Consensus 161 Fe~ER~~W~eEKekVi~YQkQLQ~ 184 (202)
T PF06818_consen 161 FEQERRTWQEEKEKVIRYQKQLQQ 184 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 4577777777777765
No 129
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=79.91 E-value=85 Score=39.16 Aligned_cols=92 Identities=20% Similarity=0.285 Sum_probs=56.5
Q ss_pred hhHHhhHHHHHHHHHhh-hhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 008232 436 DTTMKRLSEMENALRKA-SGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCL-KRLLAWEKQKA 513 (573)
Q Consensus 436 e~T~KrLsEmEnAl~ka-s~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~l-kkl~~WEkQK~ 513 (573)
.+.++||.|.++.|... ...-.-..+.-..|++|.+.+.++.+...+.- .|..+-+|+.+.....+ ++++.-|.+-.
T Consensus 147 ~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l-~s~~~~~~L~~~q~dl~~~~~~~l~~~~~ 225 (1109)
T PRK10929 147 TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQ-LSANNRQELARLRSELAKKRSQQLDAYLQ 225 (1109)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999888662 11122223334455566666655555554433 37778888877666443 34555577778
Q ss_pred HHHHHHHHHHHHHHH
Q 008232 514 KLQEEIANEKEKIKE 528 (573)
Q Consensus 514 ~LQEEla~eK~Kl~~ 528 (573)
.||+.|...+.+-++
T Consensus 226 ~Lq~~in~kR~~~se 240 (1109)
T PRK10929 226 ALRNQLNSQRQREAE 240 (1109)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888876655444
No 130
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=79.85 E-value=43 Score=36.19 Aligned_cols=89 Identities=21% Similarity=0.283 Sum_probs=68.2
Q ss_pred HHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 008232 462 AVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQK 541 (573)
Q Consensus 462 ~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~ 541 (573)
-+++|-.|..-|-+|+.-||.+|-.-++--.---|-+.--++=...|=-++.+||-|+...|.||+-..+.-.-.-|+.+
T Consensus 67 q~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLke 146 (351)
T PF07058_consen 67 QVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKE 146 (351)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777888999999999988886555555555567888999999999999999999999977665544455566
Q ss_pred hhhhhhhhc
Q 008232 542 ETEVRLICL 550 (573)
Q Consensus 542 q~E~~~~~~ 550 (573)
.+.-|++.|
T Consensus 147 K~klRLK~L 155 (351)
T PF07058_consen 147 KLKLRLKVL 155 (351)
T ss_pred HHHHHHHHH
Confidence 666666655
No 131
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=79.79 E-value=74 Score=32.31 Aligned_cols=129 Identities=25% Similarity=0.311 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhh
Q 008232 373 EIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKA 452 (573)
Q Consensus 373 Emil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~ka 452 (573)
..+-.|..++..|+..+.+=.+=-.+..=.-+.-|.+++.+|+.. .+.-+..++.-|...+|||.|+++.|...
T Consensus 92 ~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~------~~~Er~~R~erE~~i~krl~e~~~~l~~~ 165 (247)
T PF06705_consen 92 SRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEA------FENERNEREEREENILKRLEEEENRLQEK 165 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777776655544444444455566666666542 22223344456888999999999988654
Q ss_pred hhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 453 SGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKA 513 (573)
Q Consensus 453 s~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~ 513 (573)
- + ..-...|...++|+.+++..+-.-......++-..-.|-..+|.-...|+|-.
T Consensus 166 i---~---~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R 220 (247)
T PF06705_consen 166 I---E---KEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQER 220 (247)
T ss_pred H---H---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3 34445677888899998888876666666555555555555555555554433
No 132
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.70 E-value=24 Score=43.25 Aligned_cols=80 Identities=18% Similarity=0.222 Sum_probs=65.7
Q ss_pred hhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 454 GQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCL 533 (573)
Q Consensus 454 ~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel 533 (573)
+.+....+-+..||+.++-++.+|++.|++-.+-. .-++..+.+-..+|.+|...+.+|-....++
T Consensus 676 ~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~--------------~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~ 741 (1141)
T KOG0018|consen 676 KEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNE--------------LELQRTESEIDEFGPEISEIKRKLQNREGEM 741 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence 36666677888999999999999999996543322 2567788888899999999999999999998
Q ss_pred HHHHhHhHhhhhhh
Q 008232 534 ARIQQDQKETEVRL 547 (573)
Q Consensus 534 ~qak~~q~q~E~~~ 547 (573)
...++..+++|.++
T Consensus 742 ~~L~~~~n~ved~i 755 (1141)
T KOG0018|consen 742 KELEERMNKVEDRI 755 (1141)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888875
No 133
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=79.62 E-value=89 Score=36.71 Aligned_cols=149 Identities=12% Similarity=0.151 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHH------HHHHhhhhcccchhhHHhhHHHHHHHHHhhhhh
Q 008232 382 IKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMERE------ETQRLKKGKQTLEDTTMKRLSEMENALRKASGQ 455 (573)
Q Consensus 382 v~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Eke------e~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~Q 455 (573)
+.+=..+...-.+|.++++-+.-.+|..=-.+|...|++.. |++.+-..-.. -..+|.+++..+...+..
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~----l~~ql~~l~~~~~~l~~~ 333 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVN----VDNQLNELTFREAEISQL 333 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 33333444455678888887777777777777777776541 11111110000 012233333322333333
Q ss_pred hhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 456 VDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLAR 535 (573)
Q Consensus 456 ldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~q 535 (573)
.-.-|-.|+.|..+.+.|+++++.. +..+..+-..|.|-.-|+.|...-+.-...|.+..++
T Consensus 334 ~~~~hP~v~~l~~~~~~L~~~~~~l------------------~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e 395 (726)
T PRK09841 334 YKKDHPTYRALLEKRQTLEQERKRL------------------NKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQE 395 (726)
T ss_pred hcccCchHHHHHHHHHHHHHHHHHH------------------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456677777766666664432 2345567777888888888988888888888888887
Q ss_pred HHhHhHhhhhhhhhccc
Q 008232 536 IQQDQKETEVRLICLFP 552 (573)
Q Consensus 536 ak~~q~q~E~~~~~~~~ 552 (573)
+...+..-...|+-+=|
T Consensus 396 ~~i~~a~~~~~~rIid~ 412 (726)
T PRK09841 396 LSISKSSAIGNVRIIDP 412 (726)
T ss_pred HHHHhccCCCceeeccC
Confidence 76555544556665543
No 134
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=79.50 E-value=48 Score=35.56 Aligned_cols=45 Identities=24% Similarity=0.260 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008232 495 AKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (573)
Q Consensus 495 ~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~ 539 (573)
.+|.+|.+.+|+.=+...-.|||-|..|..+|...+.++..+.-+
T Consensus 392 errkqkeeeklk~e~qkikeleek~~eeedal~~all~~qeirl~ 436 (445)
T KOG2891|consen 392 ERRKQKEEEKLKAEEQKIKELEEKIKEEEDALLLALLNLQEIRLI 436 (445)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 356666777777755444568888888888888777777665433
No 135
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=79.39 E-value=90 Score=33.58 Aligned_cols=29 Identities=38% Similarity=0.337 Sum_probs=16.6
Q ss_pred HHHHHHHHhhHHHHHHhh----hhcccchhhHH
Q 008232 411 LTELKMLRMEREETQRLK----KGKQTLEDTTM 439 (573)
Q Consensus 411 ~~ELk~LR~Ekee~~rlk----KeKq~lEe~T~ 439 (573)
+.|-..||+|-||.---| |=||.+.|.|.
T Consensus 284 qieterlrqeeeelnikk~e~~kikqe~ddkdk 316 (445)
T KOG2891|consen 284 QIETERLRQEEEELNIKKAEACKIKQEFDDKDK 316 (445)
T ss_pred hhhHHHHhhhHhhhhhhHHHhhchhhhcCcccc
Confidence 345566777776643222 34677766653
No 136
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=79.33 E-value=85 Score=32.75 Aligned_cols=131 Identities=22% Similarity=0.298 Sum_probs=63.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh----hc---------------HHHHHHHHhhHH-------
Q 008232 370 QKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAA-RKLS----ND---------------LTELKMLRMERE------- 422 (573)
Q Consensus 370 ~KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa-~rL~----kd---------------~~ELk~LR~Eke------- 422 (573)
...+..-+|..++++--.++....+.+..+--|.. +.|. +. +.++..+..+-.
T Consensus 93 ~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~~~~~~Y~~~p~Kg~ 172 (297)
T PF02841_consen 93 EDQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELDELEKEYEQEPGKGV 172 (297)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHHHHHHHHHHSS---T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCc
Confidence 44456667777777777777777777765544431 1111 11 111222222211
Q ss_pred ----HHHHhhhhcccchhh---HHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHH
Q 008232 423 ----ETQRLKKGKQTLEDT---TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVA 495 (573)
Q Consensus 423 ----e~~rlkKeKq~lEe~---T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~ 495 (573)
-.+.+-+.++.+++. +-+.|++.|..+.....+.+.+....+.++....+..+.|+..+.+-.|-.....+-.
T Consensus 173 ka~evL~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekm 252 (297)
T PF02841_consen 173 KAEEVLQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKM 252 (297)
T ss_dssp THHHHHHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222333333333 3355555555555555555555555555555555555556655555555555444444
Q ss_pred HHHHH
Q 008232 496 KREKK 500 (573)
Q Consensus 496 kkekk 500 (573)
+.+++
T Consensus 253 e~e~~ 257 (297)
T PF02841_consen 253 EEERE 257 (297)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 137
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.88 E-value=1.5e+02 Score=36.75 Aligned_cols=141 Identities=21% Similarity=0.270 Sum_probs=73.7
Q ss_pred HHHHHHHhhhcHHH----HHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhh-------hhHHHHHHhh
Q 008232 400 AMQAARKLSNDLTE----LKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDR-------ANAAVRRLET 468 (573)
Q Consensus 400 vmQaa~rL~kd~~E----Lk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~Qldr-------Ana~vrrLE~ 468 (573)
|-.--.+|..++.| |+.||.|+|-++.- |-.-+|+..-+|--++-.+.|++. +-...++++-
T Consensus 263 ~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~-------~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ 335 (1200)
T KOG0964|consen 263 VEDESEDLKCEIKELENKLTNLREEKEQLKAR-------ETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKD 335 (1200)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence 33333444444444 44566655544332 333567777777767666666654 5556667777
Q ss_pred hhHHHHHHHHHhh-----hhhhhhHHHHHH----------------------------HHHHHHHHHHH-HHHHHHHHHH
Q 008232 469 ENAEIRAEMEASK-----LSAAESVTTCLE----------------------------VAKREKKCLKR-LLAWEKQKAK 514 (573)
Q Consensus 469 ena~lr~EmEAaK-----L~A~ES~~sc~e----------------------------~~kkekk~lkk-l~~WEkQK~~ 514 (573)
++.+...||..-+ |..-|....-+- -.+.|-+.|++ +..--.|...
T Consensus 336 ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~ 415 (1200)
T KOG0964|consen 336 KIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENI 415 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 7777777776533 222222211110 01111112221 2233446667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhh
Q 008232 515 LQEEIANEKEKIKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 515 LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~ 547 (573)
||.||.+-+.-+.+..+++..+..-.++..++.
T Consensus 416 lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~ 448 (1200)
T KOG0964|consen 416 LQKEIEDLESELKEKLEEIKELESSINETKGRM 448 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHH
Confidence 788887777777776666666665555444443
No 138
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=78.30 E-value=73 Score=38.53 Aligned_cols=130 Identities=22% Similarity=0.269 Sum_probs=84.2
Q ss_pred HHHHHhhHHHHHHhhhhcccchhh-----HHhhHHHHHHHHHhhhhhhhhh--hHHHHHHhhhhHHHHHHHHHhhhhhhh
Q 008232 414 LKMLRMEREETQRLKKGKQTLEDT-----TMKRLSEMENALRKASGQVDRA--NAAVRRLETENAEIRAEMEASKLSAAE 486 (573)
Q Consensus 414 Lk~LR~Ekee~~rlkKeKq~lEe~-----T~KrLsEmEnAl~kas~QldrA--na~vrrLE~ena~lr~EmEAaKL~A~E 486 (573)
+.-||.||.+++.-+=+|+-+-++ ..|++++.+.-++.-+..+|-- +---|=.+..|.+++.|||-.||++.-
T Consensus 50 iqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti 129 (1265)
T KOG0976|consen 50 IQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTI 129 (1265)
T ss_pred HHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445889999999998899988877 4488999999888887665432 222233456789999999999999876
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHhHhHhhhhhhh
Q 008232 487 SVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIK------------------ELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 487 S~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~------------------~l~qel~qak~~q~q~E~~~~ 548 (573)
+... +- +|+.+. .+..-...--+|.+||++..+-|. ++++-++.+....++.|-+..
T Consensus 130 ~~~q--~d-~ke~et--elE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~ 204 (1265)
T KOG0976|consen 130 QGAQ--DD-KKENEI--EIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLE 204 (1265)
T ss_pred HHHH--HH-HHHHHH--HHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6542 22 222222 344444455566667776666554 344445555555555554443
No 139
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=78.29 E-value=80 Score=31.86 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=10.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 008232 369 DQKDEIVVTMLHQIKDLERQVK 390 (573)
Q Consensus 369 D~KdEmil~Lv~rv~eLq~qlk 390 (573)
+++++++-.--.++.+|+.+|-
T Consensus 36 ~~r~~l~s~y~~q~~~Lq~qLl 57 (206)
T PF14988_consen 36 RERQELVSRYAKQTSELQDQLL 57 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555544443
No 140
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.87 E-value=1.8e+02 Score=35.65 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhh
Q 008232 498 EKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVR 546 (573)
Q Consensus 498 ekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~ 546 (573)
-...+..+..+..+...++.++......+..+++.+++..+.+.+++-.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 415 (1042)
T TIGR00618 367 IREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTR 415 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555666666666666655555544443
No 141
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=77.44 E-value=31 Score=36.70 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=11.9
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHh
Q 008232 457 DRANAAVRRLETENAEIRAEMEAS 480 (573)
Q Consensus 457 drAna~vrrLE~ena~lr~EmEAa 480 (573)
+.....++.|+.|..++.+|.+..
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~L 69 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEEL 69 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555554443
No 142
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=77.32 E-value=76 Score=31.08 Aligned_cols=155 Identities=18% Similarity=0.221 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHh
Q 008232 372 DEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRK 451 (573)
Q Consensus 372 dEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~k 451 (573)
|+-..+.-..+..|+.+|+. -.=+.+++...-+.|+.+..||-.-=..-- ..|++ ..|.+
T Consensus 23 D~~F~~~~~~~~~le~~Lk~-l~~~~~~l~~~~~~l~~~~~e~~~~~~~la----------~~E~~---------~~l~~ 82 (236)
T PF09325_consen 23 DEWFEEIKDYVDKLEEQLKK-LYKSLERLVKRRQELASALAEFGSSFSQLA----------KSEEE---------KSLSE 82 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cccCC---------chhHH
Confidence 56666677778888888887 455667777777778877777653211111 22333 11222
Q ss_pred hhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 008232 452 ASGQVDRANAAVRRLETENAEIRAEMEASKLS-----AAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIA------ 520 (573)
Q Consensus 452 as~QldrAna~vrrLE~ena~lr~EmEAaKL~-----A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla------ 520 (573)
+-.++-.+...+..+..+.+. -+...|. -.-...|..+++.+-.+.+-.++..+.+-.+.++++.
T Consensus 83 ~l~~l~~~~~~~~~~~~~~a~----~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~ 158 (236)
T PF09325_consen 83 ALSQLAEAFEKISELLEEQAN----QEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASG 158 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 222222222222222221111 1111111 1344556667777777777777777777777776662
Q ss_pred -HHHHHHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 521 -NEKEKIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 521 -~eK~Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
....|+.++..++..++...++++.+|.++
T Consensus 159 ~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~i 189 (236)
T PF09325_consen 159 KNRQDKVEQAENEIEEAERRVEQAKDEFEEI 189 (236)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234788889999999999988888888775
No 143
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.90 E-value=40 Score=40.51 Aligned_cols=53 Identities=25% Similarity=0.341 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhh
Q 008232 494 VAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 494 ~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~ 547 (573)
-.|+++- .-++-+...|+.-|+=+++++++||.+|.+-+...++--.++|..-
T Consensus 896 ~~k~~nl-~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~eeie~e~ 948 (970)
T KOG0946|consen 896 TVKSENL-SLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPVEEIEDEK 948 (970)
T ss_pred Hhhcccc-hhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCChhhHHhhh
Confidence 3344333 3367889999999999999999999999999999999888888653
No 144
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=76.55 E-value=91 Score=31.60 Aligned_cols=142 Identities=25% Similarity=0.350 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHH--------HHhhhhcccchhhHHhhHHHHH
Q 008232 375 VVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREET--------QRLKKGKQTLEDTTMKRLSEME 446 (573)
Q Consensus 375 il~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~--------~rlkKeKq~lEe~T~KrLsEmE 446 (573)
--.|..-+-+|.+|++.- |++.|-|.-|-.++..||++=++-||- ..+.||.|.|+ .++..++
T Consensus 38 na~L~~e~~~L~~q~~s~-----Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~----~~i~~Lq 108 (193)
T PF14662_consen 38 NAQLAEEITDLRKQLKSL-----QQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLV----AEIETLQ 108 (193)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 345666666777777744 677788888888888887776666542 22334444443 3445555
Q ss_pred HHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 008232 447 NALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREK----KCLKRLLAWEKQKAKLQEEIANE 522 (573)
Q Consensus 447 nAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkek----k~lkkl~~WEkQK~~LQEEla~e 522 (573)
..-.+-.++.|.-+.....|-++++.|+.+ +.-.|+..++.++.=-++ ..|+....|= ..+-+||.
T Consensus 109 een~kl~~e~~~lk~~~~eL~~~~~~Lq~Q-----l~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy---~~~teeLR-- 178 (193)
T PF14662_consen 109 EENGKLLAERDGLKKRSKELATEKATLQRQ-----LCEFESLICQRDAILSERTQQIEELKKTIEEY---RSITEELR-- 178 (193)
T ss_pred HHHhHHHHhhhhHHHHHHHHHHhhHHHHHH-----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHH--
Confidence 556666666666666667777777777764 455777777776654333 2333333332 23445554
Q ss_pred HHHHHHHHHHHHHH
Q 008232 523 KEKIKELQQCLARI 536 (573)
Q Consensus 523 K~Kl~~l~qel~qa 536 (573)
.+|+.|.++|.|.
T Consensus 179 -~e~s~LEeql~q~ 191 (193)
T PF14662_consen 179 -LEKSRLEEQLSQM 191 (193)
T ss_pred -HHHHHHHHHHHhh
Confidence 4455566666654
No 145
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=76.12 E-value=1.2e+02 Score=34.37 Aligned_cols=59 Identities=25% Similarity=0.294 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHhHhhhhhhhh
Q 008232 491 CLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARI-----QQDQKETEVRLIC 549 (573)
Q Consensus 491 c~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qa-----k~~q~q~E~~~~~ 549 (573)
..+-.++-++-|..+..=+.+...|++++..-+.++.++-++|.++ +..++.+..-.+.
T Consensus 327 l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~ 390 (563)
T TIGR00634 327 VLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKA 390 (563)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333344444444445567777778888888887777777776 4444555555544
No 146
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=75.92 E-value=77 Score=30.45 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhh
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSA 484 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A 484 (573)
||..+|++-|+.+-..-|.-.--|..||.+......+.+.+.+.|
T Consensus 3 ~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~da 47 (140)
T PF10473_consen 3 EKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDA 47 (140)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455556666666655555555555555555555555555555544
No 147
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=75.68 E-value=2.3e+02 Score=36.02 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHh
Q 008232 379 LHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRM 419 (573)
Q Consensus 379 v~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~ 419 (573)
+...++|=.++++.|.=|-.++--|+++|++--+-+..|+-
T Consensus 1593 ~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~ 1633 (1758)
T KOG0994|consen 1593 IRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKH 1633 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666554444444443
No 148
>PRK11519 tyrosine kinase; Provisional
Probab=75.65 E-value=1e+02 Score=36.19 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHH----HHhhhhcccc
Q 008232 387 RQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREET----QRLKKGKQTL 434 (573)
Q Consensus 387 ~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~----~rlkKeKq~l 434 (573)
.=++.-.+..++.+-++..-|.+.+ ..||++-+++ +.+|.+-..+
T Consensus 252 ~Yi~~~~~~k~~~a~~a~~fL~~ql---~~l~~~L~~aE~~l~~fr~~~~~v 300 (719)
T PRK11519 252 NYLEQNIERKSEEASKSLAFLAQQL---PEVRSRLDVAENKLNAFRQDKDSV 300 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344445556666666666665554 4455555554 4555544443
No 149
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=75.34 E-value=0.91 Score=52.60 Aligned_cols=89 Identities=22% Similarity=0.374 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhHHH-HHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHH
Q 008232 395 WAHQKAMQAARKLSNDLTELKMLRMEREE-TQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEI 473 (573)
Q Consensus 395 WA~qKvmQaa~rL~kd~~ELk~LR~Ekee-~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~l 473 (573)
+..++.-.+...|.....++..++...|+ ..+|+.|+..+.....-..+.+.+.+.....+++.+...+..|+.+..++
T Consensus 118 ~l~~~~~~le~el~~~~e~~~~~k~~le~~~~~L~~E~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l 197 (722)
T PF05557_consen 118 QLEEREEELEEELEEAEEELEQLKRKLEEEKRRLQREKEQLLEEAREEISSLKNELSELERQAENAESQIQSLESELEEL 197 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433 23444555555554444444455555555555555555555555555555
Q ss_pred HHHHHHhhhh
Q 008232 474 RAEMEASKLS 483 (573)
Q Consensus 474 r~EmEAaKL~ 483 (573)
+.+++-.+-.
T Consensus 198 ~~~le~~~~~ 207 (722)
T PF05557_consen 198 KEQLEELQSE 207 (722)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 150
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.11 E-value=59 Score=33.81 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=49.5
Q ss_pred hHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 437 TTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQ 516 (573)
Q Consensus 437 ~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQ 516 (573)
+-.+-|.|.||.+.+-+.=+++-++.--++|.|+...+.|.|+- .+++|--+.++..+.
T Consensus 62 ~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl---------------------~~n~Q~lkeE~dd~k 120 (246)
T KOG4657|consen 62 NLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVL---------------------RRNLQLLKEEKDDSK 120 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhhhHH
Confidence 34456778888888777655655555555565555555544431 123333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHhhhhh
Q 008232 517 EEIANEKEKIKELQQCLARIQQDQKETEVR 546 (573)
Q Consensus 517 EEla~eK~Kl~~l~qel~qak~~q~q~E~~ 546 (573)
|=|+..++-+++.++.-.+-+|...+++++
T Consensus 121 eiIs~kr~~~~Ka~e~~~kRkQdsa~~~e~ 150 (246)
T KOG4657|consen 121 EIISQKRQALSKAKENAGKRKQDSADIHEA 150 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccHHH
Confidence 445554444455555556666666666653
No 151
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=74.82 E-value=1.3e+02 Score=33.18 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008232 509 EKQKAKLQEEIANEKEKIK 527 (573)
Q Consensus 509 EkQK~~LQEEla~eK~Kl~ 527 (573)
+.+...|+.+|+.-+..+.
T Consensus 242 ~~~i~~l~~~i~~~~~~~~ 260 (457)
T TIGR01000 242 QQQIDQLQKSIASYQVQKA 260 (457)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444444444433333
No 152
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.74 E-value=32 Score=34.69 Aligned_cols=28 Identities=11% Similarity=0.357 Sum_probs=21.4
Q ss_pred hhhHHhhHHHHHHHHHhhhhhhhhhhHH
Q 008232 435 EDTTMKRLSEMENALRKASGQVDRANAA 462 (573)
Q Consensus 435 Ee~T~KrLsEmEnAl~kas~QldrAna~ 462 (573)
+.+.+-||-++|..|.++..+++.++..
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5667888888988888888777775543
No 153
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=74.73 E-value=1.1e+02 Score=31.79 Aligned_cols=100 Identities=21% Similarity=0.321 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK-LSAAESVTTCLEVAKREKKCL-KRLLAWEKQKAKLQE 517 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK-L~A~ES~~sc~e~~kkekk~l-kkl~~WEkQK~~LQE 517 (573)
|++.+.+-++..--.|+-+-++.++.+....+-.+.-|-++| .........=...+++...+| ..+..-......|++
T Consensus 45 ~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~ 124 (239)
T COG1579 45 KALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444433333333333333333332222 112222222233333333333 234444555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 008232 518 EIANEKEKIKELQQCLARIQQD 539 (573)
Q Consensus 518 Ela~eK~Kl~~l~qel~qak~~ 539 (573)
+|...+.++..+.+++..+++.
T Consensus 125 ~i~~l~~~~~~~e~~~~e~~~~ 146 (239)
T COG1579 125 EIEDLKERLERLEKNLAEAEAR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655555554443
No 154
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=74.55 E-value=89 Score=33.45 Aligned_cols=9 Identities=44% Similarity=0.475 Sum_probs=5.3
Q ss_pred cHHHHHHHH
Q 008232 410 DLTELKMLR 418 (573)
Q Consensus 410 d~~ELk~LR 418 (573)
|.+||+.||
T Consensus 202 d~~eL~~lk 210 (312)
T smart00787 202 DPTELDRAK 210 (312)
T ss_pred CHHHHHHHH
Confidence 555666655
No 155
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=74.33 E-value=57 Score=28.21 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=52.3
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008232 443 SEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWE 509 (573)
Q Consensus 443 sEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WE 509 (573)
.++.+.|.......+.....+..|+.-...+....+.++-.-...+....+++.+.++.|-.-..++
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~ 69 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQ 69 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777888888888888888888888888888888888888888888887777665444433
No 156
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=74.26 E-value=99 Score=30.95 Aligned_cols=92 Identities=20% Similarity=0.329 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhh--------hhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLET--------ENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQ 511 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~--------ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQ 511 (573)
.+..++|+-|+.+..+|-+.+..+++|.. |..+|-.+.+.+.-...++.. +++..++|
T Consensus 82 ~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~--------------ki~~Lek~ 147 (194)
T PF15619_consen 82 EQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEK--------------KIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Confidence 34555666666666666666666666654 223333333333222222222 22233333
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhh
Q 008232 512 K----AKLQEEIANEKEKIKELQQCLARIQQDQKETEV 545 (573)
Q Consensus 512 K----~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~ 545 (573)
- ..++-+|+.|+.|+..++.++..+..-...+.-
T Consensus 148 leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 148 LELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 234556666777776666666655544444433
No 157
>PF15456 Uds1: Up-regulated During Septation
Probab=73.83 E-value=9.7 Score=35.61 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=32.7
Q ss_pred HHHHHHhhhhcccchhh---HHhhHHHHHHHHHhhhhhhhhhhHHHH
Q 008232 421 REETQRLKKGKQTLEDT---TMKRLSEMENALRKASGQVDRANAAVR 464 (573)
Q Consensus 421 kee~~rlkKeKq~lEe~---T~KrLsEmEnAl~kas~QldrAna~vr 464 (573)
.||++.||||-+.|+.- ++++|. +|..++.|-.-+-+.+..-.
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~ 66 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSS 66 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCc
Confidence 47899999999999864 667776 88888888776666655444
No 158
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=73.83 E-value=7.5 Score=31.54 Aligned_cols=43 Identities=33% Similarity=0.488 Sum_probs=31.1
Q ss_pred HhhHHHHHHHHHhhh--hhh--hhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 439 MKRLSEMENALRKAS--GQV--DRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 439 ~KrLsEmEnAl~kas--~Ql--drAna~vrrLE~ena~lr~EmEAaK 481 (573)
+-||.|||+-|+.-- --+ .-|..-+.+|++||..||+|++-.+
T Consensus 3 ~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 3 LLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 358888888886543 112 2356678899999999999998654
No 159
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.80 E-value=33 Score=35.68 Aligned_cols=85 Identities=24% Similarity=0.304 Sum_probs=53.4
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhh
Q 008232 464 RRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKET 543 (573)
Q Consensus 464 rrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~ 543 (573)
-|=|.+||.+|+= |+...-+.+.+++.++-..+-.||+---++|.-|-+|+..-..++-++|+.|.....-.-++
T Consensus 108 vrkEl~nAlvRAG-----LktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 108 VRKELKNALVRAG-----LKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred HHHHHHHHHHHHH-----HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555543 33344455666776666666667777777777777777776666666666666555544444
Q ss_pred --------------hhhhhhcccc
Q 008232 544 --------------EVRLICLFPW 553 (573)
Q Consensus 544 --------------E~~~~~~~~~ 553 (573)
+.||--|||-
T Consensus 183 eE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 183 EEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHhchhHHHHHHHHHHHhccc
Confidence 3677777775
No 160
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=73.77 E-value=13 Score=39.09 Aligned_cols=91 Identities=20% Similarity=0.318 Sum_probs=61.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHH
Q 008232 369 DQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENA 448 (573)
Q Consensus 369 D~KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnA 448 (573)
++||++|-. +.++.++ ..+.+=|+++.-|.++.|.+...++..+. +++....+ .+| -+.|-+...|.
T Consensus 151 ~ekd~~i~~---~~~~~e~--d~rnq~l~~~i~~l~~~l~~~~~~~~~~~-~~~~~~~~------~~e-~~~r~~~lr~~ 217 (264)
T PF07246_consen 151 EEKDQLIKE---KTQEREN--DRRNQILSHEISNLTNELSNLRNDIDKFQ-EREDEKIL------HEE-LEARESGLRNE 217 (264)
T ss_pred HHHHHHHHH---Hhhchhh--hhHHHHHHHHHHHhhhhHHHhhchhhhhh-hhhhHHHH------HHH-HHHhHhhhHHH
Confidence 778887776 6666666 77888888888888888888888766663 22222222 222 35666666666
Q ss_pred HHhhhhhhhhhhHHHHHHhhhhHH
Q 008232 449 LRKASGQVDRANAAVRRLETENAE 472 (573)
Q Consensus 449 l~kas~QldrAna~vrrLE~ena~ 472 (573)
.+.-..++.+|....+++..++.-
T Consensus 218 ~~~l~~el~~aK~~~~~~~~~~~~ 241 (264)
T PF07246_consen 218 SKWLEHELSDAKEDMIRLRNDISD 241 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777888777777777766543
No 161
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=73.55 E-value=94 Score=33.24 Aligned_cols=118 Identities=29% Similarity=0.390 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhh
Q 008232 389 VKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLET 468 (573)
Q Consensus 389 lkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ 468 (573)
+.||+|=-.-||+|--.-|-..+ ++||||+|-- -=-|.-+|-||.|....+|-..+-.--|.-
T Consensus 5 ~eEWKeGL~~~aLqKIqelE~Ql-------------dkLkKE~qQr----QfQleSlEAaLqKQKqK~e~ek~e~s~LkR 67 (307)
T PF10481_consen 5 VEEWKEGLPTRALQKIQELEQQL-------------DKLKKERQQR----QFQLESLEAALQKQKQKVEEEKNEYSALKR 67 (307)
T ss_pred HhHHhccCCHHHHHHHHHHHHHH-------------HHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 45788777778877644443332 3444443321 023566788888887766655444444444
Q ss_pred hhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 469 ENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (573)
Q Consensus 469 ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak 537 (573)
||--| +.+|-.+-|..+|..-.++.=|.|-.-|.--|...|.-|..|.++|.+-|
T Consensus 68 Enq~l--------------~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~K 122 (307)
T PF10481_consen 68 ENQSL--------------MESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCK 122 (307)
T ss_pred hhhhH--------------HHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 46788888888888888888888888888888888888888887776544
No 162
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=73.55 E-value=1.3e+02 Score=31.95 Aligned_cols=141 Identities=13% Similarity=0.213 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchh---hHHhhHHHHHHHHHhhhhhhhhh------
Q 008232 389 VKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLED---TTMKRLSEMENALRKASGQVDRA------ 459 (573)
Q Consensus 389 lkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe---~T~KrLsEmEnAl~kas~QldrA------ 459 (573)
...-.+|.++.+-++-.+|..-...|...|.+.--.. .++ ....-+++++..+-.+..|+...
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d--------~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~ 239 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD--------PKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPE 239 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3456689999999998888888888888877652211 111 13344566666666665555433
Q ss_pred -hHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 460 -NAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 460 -na~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
+-.|+.|+.+.+.|++++.+..-+..-+..+ .+-.=..|-.-||-|...-+.....+.+.+++++.
T Consensus 240 ~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~-------------~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~ 306 (362)
T TIGR01010 240 QNPQVPSLQARIKSLRKQIDEQRNQLSGGLGD-------------SLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRV 306 (362)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhcCCCc-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999998886533222221110 11222235567888888888888888888888876
Q ss_pred HhHhhhhhhhhc
Q 008232 539 DQKETEVRLICL 550 (573)
Q Consensus 539 ~q~q~E~~~~~~ 550 (573)
....--.-|+.+
T Consensus 307 ~~~~~~~~~~vi 318 (362)
T TIGR01010 307 EADRQQLYLEVI 318 (362)
T ss_pred HHHhhheeeeee
Confidence 555555555554
No 163
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=73.49 E-value=1.9e+02 Score=35.38 Aligned_cols=132 Identities=24% Similarity=0.299 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhh-HHHHHHhhhh----cccchhhHHhhHHHHH
Q 008232 372 DEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRME-REETQRLKKG----KQTLEDTTMKRLSEME 446 (573)
Q Consensus 372 dEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~E-kee~~rlkKe----Kq~lEe~T~KrLsEmE 446 (573)
.|...+|---.++++..+.+|+-|- .+|++++.+.--|=+| .||.+-+|+- -+.-|+.| +..+
T Consensus 255 ~E~d~~lq~sak~ieE~m~qlk~kn--------s~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqat--kylh-- 322 (1265)
T KOG0976|consen 255 EEQDMDLQASAKEIEEKMRQLKAKN--------SVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQAT--KYLH-- 322 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH--HHHH--
Confidence 3555566666678888888888885 3566666554433222 2222322221 01111111 1222
Q ss_pred HHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhh-----------------hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008232 447 NALRKASGQVDRANAAVRRLETENAEIRAEMEASKLS-----------------AAESVTTCLEVAKREKKCLKRLLAWE 509 (573)
Q Consensus 447 nAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~-----------------A~ES~~sc~e~~kkekk~lkkl~~WE 509 (573)
..+-+|..+++.||-++--||+. |..-+.+.+|.++-+...+.+|.
T Consensus 323 --------------~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~--- 385 (1265)
T KOG0976|consen 323 --------------LENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLL--- 385 (1265)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---
Confidence 23344555555555555444444 34556666666666555444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008232 510 KQKAKLQEEIANEKEKIKELQQC 532 (573)
Q Consensus 510 kQK~~LQEEla~eK~Kl~~l~qe 532 (573)
..-+++||-|...|.+|..+.+-
T Consensus 386 ~l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 386 ELQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhc
Confidence 34567888888888888877654
No 164
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=73.19 E-value=1.8e+02 Score=33.38 Aligned_cols=142 Identities=20% Similarity=0.245 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcHHHHHHHHhhHHHH---------------HHhhhhcccc-----
Q 008232 376 VTMLHQIKDLERQVKERKEWAHQ-KAMQAARKLSNDLTELKMLRMEREET---------------QRLKKGKQTL----- 434 (573)
Q Consensus 376 l~Lv~rv~eLq~qlkewtdWA~q-KvmQaa~rL~kd~~ELk~LR~Ekee~---------------~rlkKeKq~l----- 434 (573)
=.|-.++.+++.++.+..+|... --.+|..-|.+=..++..|+...+.. +.|+.+-+.|
T Consensus 164 ~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy 243 (560)
T PF06160_consen 164 EELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGY 243 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCC
Confidence 35677888888888888888766 44444444444444444444433322 2222333333
Q ss_pred --hh-hHHhhHHHHHHHHHhhh-----hhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008232 435 --ED-TTMKRLSEMENALRKAS-----GQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLL 506 (573)
Q Consensus 435 --Ee-~T~KrLsEmEnAl~kas-----~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~ 506 (573)
++ +-.+++..++..|..+. +++|.|......++.++..|-.-||.- +.+-..|-+.-......+.
T Consensus 244 ~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E-------~~Ak~~V~~~~~~l~~~l~ 316 (560)
T PF06160_consen 244 YLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKE-------VEAKKYVEKNLKELYEYLE 316 (560)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHH
Confidence 33 34466777776666654 456667777777777776665544421 2333455566666667777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008232 507 AWEKQKAKLQEEIANEKE 524 (573)
Q Consensus 507 ~WEkQK~~LQEEla~eK~ 524 (573)
+-..|...|..|+..-++
T Consensus 317 ~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 317 HAKEQNKELKEELERVSQ 334 (560)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888775443
No 165
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=72.87 E-value=14 Score=43.16 Aligned_cols=62 Identities=21% Similarity=0.365 Sum_probs=31.8
Q ss_pred hHHHHHHhhhhHHHHHHHH---HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 460 NAAVRRLETENAEIRAEME---ASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCL 533 (573)
Q Consensus 460 na~vrrLE~ena~lr~EmE---AaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel 533 (573)
.+++..|..||+.|++.+. ..+-.....+ -.--+..++++..-|+++|+...-+...|.+--
T Consensus 565 ~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~------------p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf 629 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSLEEGNSQPVDAV------------PTSSLESQEKEIAELKAELASAEKRNQRLKEVF 629 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTT----------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCcccc------------cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888886662 1111111110 011245666677888888887766666666555
No 166
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=72.26 E-value=2.3e+02 Score=34.24 Aligned_cols=111 Identities=23% Similarity=0.350 Sum_probs=68.5
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh--hhhhhh-HHHHHHHHHHHH---------------
Q 008232 438 TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK--LSAAES-VTTCLEVAKREK--------------- 499 (573)
Q Consensus 438 T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK--L~A~ES-~~sc~e~~kkek--------------- 499 (573)
-+-||.+-+.-|.|++.|+++++.-.-++.+|+..++-.++... ++.... ..++.+.++..-
T Consensus 348 Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d 427 (775)
T PF10174_consen 348 LRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQAD 427 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 35788888889999999999999999999888888887776653 322222 234444443322
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHhHhhhhhhh
Q 008232 500 -----KCLKRLLAWEKQKAKLQEEIANEKEKIK-ELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 500 -----k~lkkl~~WEkQK~~LQEEla~eK~Kl~-~l~qel~qak~~q~q~E~~~~ 548 (573)
..+-++.-|..+|..+++.|..++.... ..++++..-++..++..++..
T Consensus 428 ~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~ 482 (775)
T PF10174_consen 428 SSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLE 482 (775)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334555777788888888776654433 223334333333333333333
No 167
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=72.18 E-value=1.8e+02 Score=33.13 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=32.7
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008232 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRL 505 (573)
Q Consensus 439 ~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl 505 (573)
.++|...|+.|.+-..+||+-...+.+.+.+....+++++.-+-...+-.....+.......-|.+.
T Consensus 75 e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~ 141 (514)
T TIGR03319 75 RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERI 141 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666665555555555444444444433333333333333333333344443
No 168
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=72.16 E-value=64 Score=33.88 Aligned_cols=19 Identities=5% Similarity=0.106 Sum_probs=10.0
Q ss_pred HhhhhHHHHHHHHHhhhhh
Q 008232 466 LETENAEIRAEMEASKLSA 484 (573)
Q Consensus 466 LE~ena~lr~EmEAaKL~A 484 (573)
|-.+.+--+.++|.++...
T Consensus 143 L~~~g~vS~~~~~~a~~~~ 161 (346)
T PRK10476 143 LLAKGYVSAQQVDQARTAQ 161 (346)
T ss_pred HHHCCCcCHHHHHHHHHHH
Confidence 3344555556666665433
No 169
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=71.92 E-value=2.1e+02 Score=33.58 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=66.7
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-----------HHHHHH
Q 008232 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKC-----------LKRLLA 507 (573)
Q Consensus 439 ~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~-----------lkkl~~ 507 (573)
+.++.+++..+...+...---+-.|+.++.++++++++++...-+...+...=.++.++..+. +.++-.
T Consensus 294 ~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~ 373 (754)
T TIGR01005 294 RERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGE 373 (754)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 345666666666666666666677888888888888776543333333333223333333322 233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhcc
Q 008232 508 WEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLICLF 551 (573)
Q Consensus 508 WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~ 551 (573)
.|.|-.-||-|...-++-...+.+.+++++..+..-...|+-+-
T Consensus 374 ~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~~~~~~~~~vi~ 417 (754)
T TIGR01005 374 QQVDLDALQRDAAAKRQLYESYLTNYRQAASRQNYVPVDARVAS 417 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEec
Confidence 46666677777777777777777777777766654445555543
No 170
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=71.55 E-value=42 Score=37.57 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHH
Q 008232 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRA 475 (573)
Q Consensus 441 rLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~ 475 (573)
++.+++..|+....++.++.+....++...+.|..
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 106 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLED 106 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455554544445544444433
No 171
>PRK11519 tyrosine kinase; Provisional
Probab=71.46 E-value=1.4e+02 Score=35.16 Aligned_cols=144 Identities=10% Similarity=0.123 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccc-h--hhHHhhHHHHHHHHHhhhhhhhhhhHHHHH
Q 008232 389 VKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTL-E--DTTMKRLSEMENALRKASGQVDRANAAVRR 465 (573)
Q Consensus 389 lkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~l-E--e~T~KrLsEmEnAl~kas~QldrAna~vrr 465 (573)
.+.-.+|-++++-+.-.+|..--..|...|.+..-.. +..+.+.+ + ..-.++|.+++..+...+...---|-.|+.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd-~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~ 343 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVD-LPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRT 343 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHH
Confidence 4455689999999999999988888998888653211 11111000 0 001122333222222222222222334454
Q ss_pred HhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhh
Q 008232 466 LETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEV 545 (573)
Q Consensus 466 LE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~ 545 (573)
|..+.+.|+++++..+ ..+..+-..|.|-.-|+-|...-+.-...+.+..+++...+..-..
T Consensus 344 l~~~~~~L~~~~~~l~------------------~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~~a~~~~ 405 (719)
T PRK11519 344 LLEKRKALEDEKAKLN------------------GRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVG 405 (719)
T ss_pred HHHHHHHHHHHHHHHH------------------HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCCC
Confidence 4444444444333322 2233445556666667777777777777777766666544444344
Q ss_pred hhhhcc
Q 008232 546 RLICLF 551 (573)
Q Consensus 546 ~~~~~~ 551 (573)
.|+.+=
T Consensus 406 ~~rIid 411 (719)
T PRK11519 406 DVRIVD 411 (719)
T ss_pred CeEEEe
Confidence 555543
No 172
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=71.33 E-value=45 Score=34.36 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=16.2
Q ss_pred HHHHhhhhhhhhhhHHHHHHh---hhhHHHHHHHHHhhhh
Q 008232 447 NALRKASGQVDRANAAVRRLE---TENAEIRAEMEASKLS 483 (573)
Q Consensus 447 nAl~kas~QldrAna~vrrLE---~ena~lr~EmEAaKL~ 483 (573)
..+..+..+++.|.....|.+ .+++--+.|++.++..
T Consensus 115 ~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~ 154 (334)
T TIGR00998 115 IKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKA 154 (334)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHH
Confidence 333444444444433443332 2344445566655543
No 173
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.97 E-value=81 Score=29.48 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=40.9
Q ss_pred hhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 453 SGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQC 532 (573)
Q Consensus 453 s~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qe 532 (573)
..=|++=.+.+|++|+|++.++.|..+..-.-.+...-...+.+.- ..+..-.++...|+.++++-..+...+.+=
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~----e~~~~~~~~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN----EELRALKKEVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888999999999888887654333222222222222111 122333344445555555555555444443
Q ss_pred H
Q 008232 533 L 533 (573)
Q Consensus 533 l 533 (573)
+
T Consensus 91 l 91 (120)
T PF12325_consen 91 L 91 (120)
T ss_pred h
Confidence 3
No 174
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=70.27 E-value=49 Score=33.02 Aligned_cols=85 Identities=19% Similarity=0.257 Sum_probs=55.6
Q ss_pred HHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhh---HHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHH
Q 008232 400 AMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDT---TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAE 476 (573)
Q Consensus 400 vmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~---T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~E 476 (573)
.++...+..+-+.+++.|-++.++..- +++.+|+- .-.+|.|++.......++.+...+.+.+|+.+...|..+
T Consensus 98 LL~lk~~~~~~~e~~k~le~~~~~~~~---~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~ 174 (190)
T PF05266_consen 98 LLSLKDDQEKLLEERKKLEKKIEEKEA---ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEE 174 (190)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555554411 22333333 236788888888888888888888899999988888888
Q ss_pred HHHhhhhhhhh
Q 008232 477 MEASKLSAAES 487 (573)
Q Consensus 477 mEAaKL~A~ES 487 (573)
.+.++++=...
T Consensus 175 ~~~~e~~F~~~ 185 (190)
T PF05266_consen 175 IENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHH
Confidence 88888764443
No 175
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=70.25 E-value=1.2e+02 Score=30.44 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=79.1
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 008232 445 MENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLK-----RLLAWEKQKAKLQEEI 519 (573)
Q Consensus 445 mEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lk-----kl~~WEkQK~~LQEEl 519 (573)
++-.|+....+|..+..++-+.-+..-.+.++.+...-.+.+-...-..+++++...|= +-+.-+.+-.-|+.++
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~ 108 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALEREL 108 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555568888888888888888888888888888888888888888888766554 4455666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 520 ANEKEKIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 520 a~eK~Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
...+.-+.+|...|.+.+....++.++=.-|
T Consensus 109 ~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l 139 (219)
T TIGR02977 109 AAVEETLAKLQEDIAKLQAKLAEARARQKAL 139 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888777777777777776665433
No 176
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=70.21 E-value=1.1e+02 Score=35.71 Aligned_cols=109 Identities=13% Similarity=0.100 Sum_probs=61.7
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 008232 438 TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLE----VAKREKKCLKRLLAWEKQKA 513 (573)
Q Consensus 438 T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e----~~kkekk~lkkl~~WEkQK~ 513 (573)
+++.|.|+=-+....+.|.+.-... .++.|.+.++.=-+-.+....+-...-.. +..+-.-.-++ ..|- |+-
T Consensus 489 ~~~al~el~~~~~~~~~~~~~~~~~--n~~sel~sl~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~-q~e 564 (607)
T KOG0240|consen 489 VLTALEELAVNYDQKSEEKESKLSQ--NLKSELQSLQEPSEHQSKRITELLSELRKDLGEIGWKIGTSSEK-RLYI-QLE 564 (607)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhhhh--hhHHHHHhhhhcccchhHHHHHHHHHHHhhhccccccccCCccc-ceee-ehh
Confidence 4555555555555566665532221 15566666655444444433332221110 00000000001 3344 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhcccc
Q 008232 514 KLQEEIANEKEKIKELQQCLARIQQDQKETEVRLICLFPW 553 (573)
Q Consensus 514 ~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~ 553 (573)
.+|.|+.+ |+.+...++.+-+....|++++.+.|-|.
T Consensus 565 ~~~~~~~~---~~~~~~~~~~~~k~~~s~hs~~~~slt~~ 601 (607)
T KOG0240|consen 565 VLQSESNT---KMEQEEKELRPCKLLISQHSAKKKSLTES 601 (607)
T ss_pred hhhhHHHH---HHHHHHHhhHHHHHHHHHHHHHHhccchh
Confidence 99988864 67788889999999999999999988764
No 177
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=70.17 E-value=3.1e+02 Score=34.93 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=17.9
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHH
Q 008232 438 TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIR 474 (573)
Q Consensus 438 T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr 474 (573)
|...|.+.++.+.-|-+-+-.|+-.+.+||....+|+
T Consensus 1596 a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1596 AQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555544444444444445555555444444
No 178
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=69.85 E-value=2.1e+02 Score=32.73 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHH
Q 008232 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLE 493 (573)
Q Consensus 441 rLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e 493 (573)
++.+.+..+.....++........+++.+++++...+|+....+.|-.+...+
T Consensus 54 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~ 106 (475)
T PRK10361 54 QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMIN 106 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666667777777776666666666555444443
No 179
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=69.64 E-value=1.6e+02 Score=31.41 Aligned_cols=128 Identities=22% Similarity=0.302 Sum_probs=70.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHh-------hhhhhhhhhHHHHHHhhhhH
Q 008232 399 KAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRK-------ASGQVDRANAAVRRLETENA 471 (573)
Q Consensus 399 KvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~k-------as~QldrAna~vrrLE~ena 471 (573)
-|||+-+-|..=-.-|.=+|+-.| =+.|.+||.|..|.|.- .+|-.=- |--|-|--||.
T Consensus 162 s~~qlR~~llDPAinl~F~rlK~e------------le~tk~Klee~QnelsAwkFTPdS~tGK~LM--AKCR~L~qENe 227 (330)
T KOG2991|consen 162 SVAQLRSTLLDPAINLFFLRLKGE------------LEQTKDKLEEAQNELSAWKFTPDSKTGKMLM--AKCRTLQQENE 227 (330)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHH------------HHHHHHHHHHHHhhhheeeecCCCcchHHHH--HHHHHHHHHHH
Confidence 477765444443333444444333 24578889999998853 2333323 33455666666
Q ss_pred HHHHHHHHhhhhhhhhHHHHH----HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008232 472 EIRAEMEASKLSAAESVTTCL----EVAKREKKCL--------KRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (573)
Q Consensus 472 ~lr~EmEAaKL~A~ES~~sc~----e~~kkekk~l--------kkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~ 539 (573)
||-.+.---+|.-.|..-.-| +-+|.-..-| .....+..--..||++|.+-+..|-.|.+.++|..+.
T Consensus 228 ElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqa 307 (330)
T KOG2991|consen 228 ELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQA 307 (330)
T ss_pred HHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665444333333333222111 1222222222 2334455667788999988888888888888887765
Q ss_pred h
Q 008232 540 Q 540 (573)
Q Consensus 540 q 540 (573)
.
T Consensus 308 v 308 (330)
T KOG2991|consen 308 V 308 (330)
T ss_pred h
Confidence 4
No 180
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=69.52 E-value=2.6e+02 Score=33.68 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhHhHhhh
Q 008232 525 KIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 525 Kl~~l~qel~qak~~q~q~E 544 (573)
++..++..+.-.++.+.+.|
T Consensus 772 ~ve~~~k~~e~~~~~~~~le 791 (961)
T KOG4673|consen 772 HVELIQKDLEREKASRLDLE 791 (961)
T ss_pred HHHHHHHHhhhCHHHHhhcc
Confidence 34444444444444445544
No 181
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=69.01 E-value=32 Score=33.44 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=40.0
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhh
Q 008232 464 RRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKET 543 (573)
Q Consensus 464 rrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~ 543 (573)
-.+-.+...+++++++++.++....+...++ -+....++.+||+.-|.+|.+.+.+++-.|++-++.
T Consensus 121 ~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~-------------~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 121 HSLIKELIKLEEKLEALKKQAESASEAAEKL-------------LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456667777788777776655544333 223445667777777777777666666555444443
No 182
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=69.00 E-value=1.6 Score=52.03 Aligned_cols=166 Identities=23% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHh
Q 008232 375 VVTMLHQIKDLERQVKERK---EWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRK 451 (573)
Q Consensus 375 il~Lv~rv~eLq~qlkewt---dWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~k 451 (573)
|-++-.+++|||.++.+-. +=+...+.-+=+|+..-.+||-.++.+.+.++|.++- +| -.|.|+...|..
T Consensus 576 ~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~---aE----~el~e~~~~~~~ 648 (859)
T PF01576_consen 576 LKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQ---AE----SELDELQERLNE 648 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHH
Confidence 4556666777776666532 1122222233345666667777777777777766552 22 234445555555
Q ss_pred hhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 452 ASGQVDRANAAVRRLETENAEIRAEMEASKLSAAE----------SVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIAN 521 (573)
Q Consensus 452 as~QldrAna~vrrLE~ena~lr~EmEAaKL~A~E----------S~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~ 521 (573)
.+.+..-.....++||++++.|..++|-+.=.+.. -++..++=+..|+- ..+.-|+.|.-|...|..
T Consensus 649 l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~---~~~~le~~k~~LE~q~ke 725 (859)
T PF01576_consen 649 LTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQD---HNQHLEKEKKALERQVKE 725 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 55555556677888999998888888754321111 11222222222222 234456666666666666
Q ss_pred HHHHHHHHHHHH-HHHHhHhHhhhhhhhhc
Q 008232 522 EKEKIKELQQCL-ARIQQDQKETEVRLICL 550 (573)
Q Consensus 522 eK~Kl~~l~qel-~qak~~q~q~E~~~~~~ 550 (573)
.+.+|..+.... ...+.....+|+|++-|
T Consensus 726 Lq~rl~e~E~~~~~~~k~~i~kLE~ri~eL 755 (859)
T PF01576_consen 726 LQARLEEAEQSALKGGKKQIAKLEARIREL 755 (859)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHhhhcccccHHHHHhHHHHHH
Confidence 666666665432 22345555666665544
No 183
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=68.48 E-value=2e+02 Score=33.35 Aligned_cols=42 Identities=26% Similarity=0.530 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
.+|++.|.++.=+..-...-.-.+.+|-.||+-|+.++..+|
T Consensus 148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 455555555444444444444445555555555666666655
No 184
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=68.21 E-value=1.1e+02 Score=36.82 Aligned_cols=55 Identities=40% Similarity=0.508 Sum_probs=39.6
Q ss_pred cHHHHHHHHhhHH--HHHHhhhhcccchhhHHhhHHHHHHHH-------HhhhhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 008232 410 DLTELKMLRMERE--ETQRLKKGKQTLEDTTMKRLSEMENAL-------RKASGQVDRANAAVRRLETENAEIRAEMEA 479 (573)
Q Consensus 410 d~~ELk~LR~Eke--e~~rlkKeKq~lEe~T~KrLsEmEnAl-------~kas~QldrAna~vrrLE~ena~lr~EmEA 479 (573)
-+-|||+|=.|.| |++|| ++|+|.-+ .++.-|+|-|=| +|-|..|||+||+.+-.
T Consensus 342 LLgELkaLVaeq~DsE~qRL--------------itEvE~cislLPav~g~tniq~EIALA-~QplrsENaqLrRrLri 405 (861)
T PF15254_consen 342 LLGELKALVAEQEDSEVQRL--------------ITEVEACISLLPAVSGSTNIQVEIALA-MQPLRSENAQLRRRLRI 405 (861)
T ss_pred HHHHHHHHHhccchHHHHHH--------------HHHHHHHHHhhhhhhccccchhhhHhh-hhhhhhhhHHHHHHHHH
Confidence 3457888866543 45555 46777655 467789998865 99999999999986544
No 185
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=68.15 E-value=92 Score=33.02 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=71.8
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 438 TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQE 517 (573)
Q Consensus 438 T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQE 517 (573)
|..+|.+|-+.| .-|++|+--|-=|....-++..- .+-...+..+.....++.+++..++.+-..++|
T Consensus 147 S~~dl~e~~~~l----~DLesa~vkV~WLR~~L~Ei~Ea--------~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~E 214 (269)
T PF05278_consen 147 SESDLKEMIATL----KDLESAKVKVDWLRSKLEEILEA--------KEIYDQHETREEEKEEKDRKLELKKEELEELEE 214 (269)
T ss_pred hHHHHHHHHHHH----HHHHHcCcchHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666655 35667777776666655555422 222233344444556667788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhcc
Q 008232 518 EIANEKEKIKELQQCLARIQQDQKETEVRLICLF 551 (573)
Q Consensus 518 Ela~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~ 551 (573)
||+....+++++++.+..++..--++|.+--+|.
T Consensus 215 eL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~ 248 (269)
T PF05278_consen 215 ELKQKEKEVKEIKERITEMKGRLGELEMESTRLS 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888887776664
No 186
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=68.04 E-value=38 Score=32.36 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=36.1
Q ss_pred chhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 008232 434 LEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEA 479 (573)
Q Consensus 434 lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEA 479 (573)
++..+---|.+|+..|.....|+..-...+..|+.|.+.|+.++-.
T Consensus 66 ~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~ 111 (169)
T PF07106_consen 66 LEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN 111 (169)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 3555677789999999999988888888888888888777766533
No 187
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=67.96 E-value=1.2e+02 Score=36.40 Aligned_cols=40 Identities=15% Similarity=-0.021 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHhcCcHHHhhhhC
Q 008232 162 QLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSIE 205 (573)
Q Consensus 162 rle~RSL~GLVafL~~~fP~LS~~dAm~yLLlADadLl~A~a~~ 205 (573)
..+.+-|..|...+..+.+.|-..- =.++.+|+..|.+.-
T Consensus 245 ~~~~~il~~l~~~i~~~~~~l~~~~----~~l~~lD~l~a~a~~ 284 (782)
T PRK00409 245 QEIERILKELSAKVAKNLDFLKFLN----KIFDELDFIFARARY 284 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4455667777777766655433211 123556665555543
No 188
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.72 E-value=78 Score=35.86 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 008232 498 EKKCLKRLLAWEKQKAKLQEEIANE----KEKIKELQQCLA 534 (573)
Q Consensus 498 ekk~lkkl~~WEkQK~~LQEEla~e----K~Kl~~l~qel~ 534 (573)
.++..|..+.|-++-.+++|-.++. -.+|..||++|-
T Consensus 405 n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 405 NKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667788877666665544433 345555555553
No 189
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=67.65 E-value=82 Score=37.52 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=68.6
Q ss_pred HHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHH
Q 008232 411 LTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTT 490 (573)
Q Consensus 411 ~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~s 490 (573)
+.|||.||.+..+.+.- ...=...++..+.....||.+..-..+.-....+.|.+|.-++-..|.|+-.+
T Consensus 372 k~ELk~Lk~k~~~~~~~----------~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~ 441 (717)
T PF09730_consen 372 KAELKALKSKYNELEER----------YKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGS 441 (717)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 67889998887755441 11111234555556666666666666666677788888888887778777663
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008232 491 CLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (573)
Q Consensus 491 c~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~ 539 (573)
-...|+||.+-.+-|++|+.-++..++.
T Consensus 442 ---------------------LnsAQDELvtfSEeLAqLYHHVC~cNge 469 (717)
T PF09730_consen 442 ---------------------LNSAQDELVTFSEELAQLYHHVCMCNGE 469 (717)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3567999999999999999998876543
No 190
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=67.54 E-value=30 Score=34.81 Aligned_cols=71 Identities=23% Similarity=0.255 Sum_probs=47.6
Q ss_pred hhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHh
Q 008232 407 LSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEAS 480 (573)
Q Consensus 407 L~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAa 480 (573)
+..-..+|+.+|++.+++-+-+|-.|.---.+++.|..-=..+-..+-+++ .++.+||.|+.++|+++...
T Consensus 145 ~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie---~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 145 LKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIE---VACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 444556788999999999999988887655554444444444444444444 45567778888888776544
No 191
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=67.39 E-value=1.7e+02 Score=34.45 Aligned_cols=36 Identities=8% Similarity=0.262 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhh
Q 008232 510 KQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEV 545 (573)
Q Consensus 510 kQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~ 545 (573)
.|..-|+.+++..+.++.++.+.-.+..+++.+.|.
T Consensus 346 ~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~ 381 (726)
T PRK09841 346 EKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEA 381 (726)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 345556666666666666655555555555555443
No 192
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=67.35 E-value=43 Score=34.44 Aligned_cols=78 Identities=18% Similarity=0.313 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHH----------HHHHHHHhhhhhhhhhhHHHHHHh
Q 008232 398 QKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLS----------EMENALRKASGQVDRANAAVRRLE 467 (573)
Q Consensus 398 qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLs----------EmEnAl~kas~QldrAna~vrrLE 467 (573)
.|+.+..+..+.=+.|+..++.|--=.+.+++|+..|.+.=|..+. .||+-|+.+..+-++....++++.
T Consensus 8 ~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 8 NKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555556666666655556666666666555444333 345555555555555555555555
Q ss_pred hhhHHHHH
Q 008232 468 TENAEIRA 475 (573)
Q Consensus 468 ~ena~lr~ 475 (573)
.|..-|+-
T Consensus 88 eey~~Lk~ 95 (230)
T PF10146_consen 88 EEYKPLKD 95 (230)
T ss_pred HHHHHHHH
Confidence 44444433
No 193
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=67.32 E-value=2.2e+02 Score=32.18 Aligned_cols=102 Identities=20% Similarity=0.200 Sum_probs=62.0
Q ss_pred HhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 008232 450 RKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEK------ 523 (573)
Q Consensus 450 ~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK------ 523 (573)
.-...+.|-++.-++.|+.++..++.|+.-.+..+.....++.+-.+.-...+.-...=|-+-.+++.|+.--+
T Consensus 277 ~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~ 356 (511)
T PF09787_consen 277 EELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQ 356 (511)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh
Confidence 34455677777888888888888888887777777776766666555544444333322455555555552222
Q ss_pred ---------HHHHHHHHHHHHHH-----hHhHhhhhhhhhcc
Q 008232 524 ---------EKIKELQQCLARIQ-----QDQKETEVRLICLF 551 (573)
Q Consensus 524 ---------~Kl~~l~qel~qak-----~~q~q~E~~~~~~~ 551 (573)
.|+.++|+-..+.. ..+.++|.|++-|-
T Consensus 357 ~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt 398 (511)
T PF09787_consen 357 KSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLT 398 (511)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhcc
Confidence 25555554444422 24678888887753
No 194
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.31 E-value=3.2e+02 Score=33.93 Aligned_cols=146 Identities=29% Similarity=0.347 Sum_probs=83.0
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhh-cccchhh--HHhh-HHHHHHHH---HhhhhhhhhhhHHHHHHhhhhH
Q 008232 399 KAMQAARKLSNDLTELKMLRMEREETQRLKKG-KQTLEDT--TMKR-LSEMENAL---RKASGQVDRANAAVRRLETENA 471 (573)
Q Consensus 399 KvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKe-Kq~lEe~--T~Kr-LsEmEnAl---~kas~QldrAna~vrrLE~ena 471 (573)
|+|+.--- -+-||+.-|+|.+|++..|.+ |+.|-|- ||.= -.+-|-|= +...-.|+-+.-.+-.||++..
T Consensus 273 kim~qqa~---Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlE 349 (1243)
T KOG0971|consen 273 KIMEQQAD---LQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLE 349 (1243)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554322 345678888888888876653 2333322 1111 11222232 3334567778888889999999
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHH------HHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 008232 472 EIRAEMEASKLSAAESVTTCLEVA------KREKKCLKR---LLAWEKQ-KAKLQEEIANEKEKIKELQQCLARIQQDQK 541 (573)
Q Consensus 472 ~lr~EmEAaKL~A~ES~~sc~e~~------kkekk~lkk---l~~WEkQ-K~~LQEEla~eK~Kl~~l~qel~qak~~q~ 541 (573)
.||+|||-- =+++. +.|--+.+ -|=|.+|-| +-+=||| .-+||.|+..-++.+.+|.+.-+..+..-+
T Consensus 350 ILKaEmeek-G~~~~-~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d 427 (1243)
T KOG0971|consen 350 ILKAEMEEK-GSDGQ-AASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELD 427 (1243)
T ss_pred HHHHHHHhc-CCCCc-ccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999853 22221 22222222 122333333 3344554 346777777777777777777777777777
Q ss_pred hhhhhhhh
Q 008232 542 ETEVRLIC 549 (573)
Q Consensus 542 q~E~~~~~ 549 (573)
++|.++.-
T Consensus 428 ~aEs~iad 435 (1243)
T KOG0971|consen 428 QAESTIAD 435 (1243)
T ss_pred HHHHHHHH
Confidence 77766544
No 195
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=67.04 E-value=2.3e+02 Score=32.97 Aligned_cols=166 Identities=19% Similarity=0.271 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhh---HHhhHHHHHHH
Q 008232 375 VVTMLHQIKDLERQVKER---KEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDT---TMKRLSEMENA 448 (573)
Q Consensus 375 il~Lv~rv~eLq~qlkew---tdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~---T~KrLsEmEnA 448 (573)
|-+|-+++.+|.+.+.+= -.=+..++-..-.+|+.-.+|+..+.-... .|||. -.+-.+-+...
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~----------~le~e~~~Lk~en~rl~~~ 184 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK----------ALEDELKRLKAENSRLREE 184 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH----------HHHHHHHHHHHHhhhhHHH
Confidence 445566666665554332 223455666666677777777776655543 33443 22445667788
Q ss_pred HHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhh------------hh------------HHHHHHHHHHHH----H
Q 008232 449 LRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA------------ES------------VTTCLEVAKREK----K 500 (573)
Q Consensus 449 l~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~------------ES------------~~sc~e~~kkek----k 500 (573)
|..+-.|+|.....-.+++.....|+.|++..+..=. ++ +.+.+|+--.-. .
T Consensus 185 l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~ 264 (546)
T KOG0977|consen 185 LARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQ 264 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887777777777777777776662211 11 122222211111 1
Q ss_pred HHHHHHHHHHHH---HH------------HHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 501 CLKRLLAWEKQK---AK------------LQEEIANEKEKIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 501 ~lkkl~~WEkQK---~~------------LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
.-+.+..|=+-| +. .+||+..-+..|..|+..|......-...|.++..|
T Consensus 265 nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL 329 (546)
T KOG0977|consen 265 NRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDL 329 (546)
T ss_pred hHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHH
Confidence 122344554333 22 558888888888777777766655555555544443
No 196
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=66.49 E-value=2.9e+02 Score=33.11 Aligned_cols=180 Identities=18% Similarity=0.212 Sum_probs=92.2
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHH--HHHHhhHHHHHHhhhhcccchhh--HH
Q 008232 364 ETITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTEL--KMLRMEREETQRLKKGKQTLEDT--TM 439 (573)
Q Consensus 364 ~~vp~D~KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~EL--k~LR~Ekee~~rlkKeKq~lEe~--T~ 439 (573)
.-+|++..|++=+++..-+-.|-.++..|.+=...+.-+ .+.|..+. ..+=.++++.++.-++-.++... |+
T Consensus 384 k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k----~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~ 459 (698)
T KOG0978|consen 384 KSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRK----QALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETI 459 (698)
T ss_pred hCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888776544443321 22222222 11112222222222211111111 11
Q ss_pred -hhHHHHHHHHHhhhhhh--------------hhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHH--HHHHHHHHHHHHH
Q 008232 440 -KRLSEMENALRKASGQV--------------DRANAAVRRLETENAEIRAEMEASKLSAAESVT--TCLEVAKREKKCL 502 (573)
Q Consensus 440 -KrLsEmEnAl~kas~Ql--------------drAna~vrrLE~ena~lr~EmEAaKL~A~ES~~--sc~e~~kkekk~l 502 (573)
-=..+|+.-+.+..-|| +++|..+..|.-+...+..++ +.|.++.... -...+=+++..+.
T Consensus 460 gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i--~~l~~~~~~~~~~i~~leeq~~~lt 537 (698)
T KOG0978|consen 460 GSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQI--LTLKASVDKLELKIGKLEEQERGLT 537 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12333444444444443 455666666655555544433 3333333322 2233334555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhh
Q 008232 503 KRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLIC 549 (573)
Q Consensus 503 kkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~ 549 (573)
.....-+++...++.=|...|.++..+-+.+.+.+......+++..-
T Consensus 538 ~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~ 584 (698)
T KOG0978|consen 538 SNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQ 584 (698)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777777777777777777666666666666655555443
No 197
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=65.86 E-value=50 Score=37.43 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=41.7
Q ss_pred hhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 454 GQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCL 533 (573)
Q Consensus 454 ~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel 533 (573)
+|+-.-+.-++.|+.+|..|++|-|.-+-+..--....+.++..++. ...+|...|++|+..-+..|.+|+++|
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~------~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQ------ELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455566666666666653333333333444444444442 233466677777777777777777777
Q ss_pred HH
Q 008232 534 AR 535 (573)
Q Consensus 534 ~q 535 (573)
..
T Consensus 140 ~~ 141 (472)
T TIGR03752 140 AG 141 (472)
T ss_pred hh
Confidence 53
No 198
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.78 E-value=2.6e+02 Score=32.40 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=5.4
Q ss_pred hhhhhhhhccc
Q 008232 542 ETEVRLICLFP 552 (573)
Q Consensus 542 q~E~~~~~~~~ 552 (573)
++|..+.-.|-
T Consensus 506 ~le~~~~~~f~ 516 (650)
T TIGR03185 506 QLEEEITKSFK 516 (650)
T ss_pred HHHHHHHHHHH
Confidence 34555555543
No 199
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=65.60 E-value=2.4e+02 Score=35.21 Aligned_cols=14 Identities=43% Similarity=0.558 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhhcH
Q 008232 396 AHQKAMQAARKLSNDL 411 (573)
Q Consensus 396 A~qKvmQaa~rL~kd~ 411 (573)
.|||+|-.| |.||+
T Consensus 396 vNQkl~K~~--llKd~ 409 (1041)
T KOG0243|consen 396 VNQKLMKKT--LLKDL 409 (1041)
T ss_pred cchHHHHHH--HHHHH
Confidence 478888763 55554
No 200
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=65.10 E-value=86 Score=26.61 Aligned_cols=37 Identities=22% Similarity=0.394 Sum_probs=19.2
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 445 MENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 445 mEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
.+..|..+..+++.+...+..|+.....+...+....
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 39 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ 39 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3455555666666666666666666666655554444
No 201
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=64.78 E-value=92 Score=32.45 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Q 008232 516 QEEIANEKEKIKELQQCLARIQQDQ 540 (573)
Q Consensus 516 QEEla~eK~Kl~~l~qel~qak~~q 540 (573)
+++++..+..+..++.++.+++...
T Consensus 177 ~~~~~~~~~~l~~~~~~l~~a~~~l 201 (331)
T PRK03598 177 PQDIAQAKASLAQAQAALAQAELNL 201 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666665544443
No 202
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=64.47 E-value=1.8e+02 Score=30.13 Aligned_cols=66 Identities=18% Similarity=0.392 Sum_probs=37.3
Q ss_pred hhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHH-hhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 407 LSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALR-KASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 407 L~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~-kas~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
+...--||+..++|.+ +++ .+....+..+....+. ....|+.+.+..+..|..|+.++.++..++.
T Consensus 96 vIs~pl~l~iF~~eI~--~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 162 (301)
T PF14362_consen 96 VISEPLELKIFEKEID--QKL-------DEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQ 162 (301)
T ss_pred HHHHHHHHHHHHHHHH--HHH-------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888777 222 2333333333333332 2455666666666666666666666666554
No 203
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=64.36 E-value=1.6e+02 Score=29.48 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008232 511 QKAKLQEEIANEKEKIKELQQ 531 (573)
Q Consensus 511 QK~~LQEEla~eK~Kl~~l~q 531 (573)
.-.-|++||..-.+||.+-.+
T Consensus 172 ~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 172 EVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334455555555555544433
No 204
>PF15294 Leu_zip: Leucine zipper
Probab=64.06 E-value=47 Score=35.22 Aligned_cols=40 Identities=25% Similarity=0.294 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhh
Q 008232 506 LAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 506 ~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~ 548 (573)
+.=+++..-|+++|..+|+.|..+|.+|..+ .++.|.+.+
T Consensus 211 ~d~~~~~k~L~e~L~~~KhelL~~QeqL~~a---ekeLekKfq 250 (278)
T PF15294_consen 211 QDKESQQKALEETLQSCKHELLRVQEQLSLA---EKELEKKFQ 250 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhcc---hhhHHHHhC
Confidence 3344577778999999999999999986654 456666554
No 205
>PTZ00121 MAEBL; Provisional
Probab=63.71 E-value=4.5e+02 Score=34.42 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 376 VTMLHQIKDLERQVKERKEWAHQKAMQA 403 (573)
Q Consensus 376 l~Lv~rv~eLq~qlkewtdWA~qKvmQa 403 (573)
++|...-+.+..+-.-..+=+.+|+=|+
T Consensus 1598 ~~~~~~~~~~kae~~kk~ee~~kk~E~~ 1625 (2084)
T PTZ00121 1598 MKLYEEEKKMKAEEAKKAEEAKIKAEEL 1625 (2084)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344333444444444444455444443
No 206
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=63.50 E-value=1.1e+02 Score=32.41 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=29.3
Q ss_pred HHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHH
Q 008232 417 LRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (573)
Q Consensus 417 LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmE 478 (573)
||.+|..+-+..=|...+|-.-..-+..+..-+..+..+|+...+..-.|+.++.--+.|+|
T Consensus 146 lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELE 207 (267)
T PF10234_consen 146 LREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELE 207 (267)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443334444444444444444444444555555555555555555555555544
No 207
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=63.50 E-value=1.2e+02 Score=32.16 Aligned_cols=22 Identities=9% Similarity=0.264 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008232 373 EIVVTMLHQIKDLERQVKERKE 394 (573)
Q Consensus 373 Emil~Lv~rv~eLq~qlkewtd 394 (573)
.-+.-||.|++-|+.++.-|..
T Consensus 52 ~ql~ll~~~~k~L~aE~~qwqk 73 (268)
T PF11802_consen 52 AQLSLLMMRVKCLTAELEQWQK 73 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 4456899999999999998854
No 208
>PRK10698 phage shock protein PspA; Provisional
Probab=63.37 E-value=1.7e+02 Score=29.74 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=56.6
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 459 ANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRL-----LAWEKQKAKLQEEIANEKEKIKELQQCL 533 (573)
Q Consensus 459 Ana~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl-----~~WEkQK~~LQEEla~eK~Kl~~l~qel 533 (573)
+..++-+.-+..-.+.++++...-.+.+-...-.-++.++...|=|- +.-+.+-.-|+.++.....-+.+|++.+
T Consensus 43 ~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l 122 (222)
T PRK10698 43 VRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEI 122 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666666666666666665555444 4455566666666777777777777777
Q ss_pred HHHHhHhHhhhhhhhhc
Q 008232 534 ARIQQDQKETEVRLICL 550 (573)
Q Consensus 534 ~qak~~q~q~E~~~~~~ 550 (573)
.+.+....++..|-.-|
T Consensus 123 ~~L~~ki~eak~k~~~L 139 (222)
T PRK10698 123 GELENKLSETRARQQAL 139 (222)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666655444
No 209
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=63.25 E-value=2.1e+02 Score=34.41 Aligned_cols=144 Identities=22% Similarity=0.296 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhc-ccchhhHHhhHHHHHHHHHhhhhhhh
Q 008232 379 LHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGK-QTLEDTTMKRLSEMENALRKASGQVD 457 (573)
Q Consensus 379 v~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeK-q~lEe~T~KrLsEmEnAl~kas~Qld 457 (573)
|+|..|--.+++++-+-|-++.-|+.+ +.-+.|+.+==+.+-++-+...++ -..||-||| |+-.+...+..|.
T Consensus 107 lrq~eekn~slqerLelaE~~l~qs~r--ae~lpeveael~qr~~al~~aee~~~~~eer~~k----l~~~~qe~naeL~ 180 (916)
T KOG0249|consen 107 LRQNEEKNRSLQERLELAEPKLQQSLR--AETLPEVEAELAQRNAALTKAEEHSGNIEERTRK----LEEQLEELNAELQ 180 (916)
T ss_pred hchhHHhhhhhhHHHHHhhHhhHhHHh--hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHH----HHHHHHHHHHHHH
Confidence 455566666788888899999999988 444444433111111111111111 122333443 3444455566666
Q ss_pred hhhHHHHHHhhhhHHHH------HHHHHhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 458 RANAAVRRLETENAEIR------AEMEASKLSAAESVTTCLEVAKREKKCL-KRLLAWEKQKAKLQEEIANEKEKIKELQ 530 (573)
Q Consensus 458 rAna~vrrLE~ena~lr------~EmEAaKL~A~ES~~sc~e~~kkekk~l-kkl~~WEkQK~~LQEEla~eK~Kl~~l~ 530 (573)
||+ ||+|++-+--. -||++--+.--..+-.=.+.+..+..++ |++...++.|.+|+.++.+.+.-+.+|.
T Consensus 181 rar---qreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 181 RAR---QREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHH---HHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 654 44444321100 0222221111111111112222222332 3566778888888888888887777777
Q ss_pred H
Q 008232 531 Q 531 (573)
Q Consensus 531 q 531 (573)
.
T Consensus 258 ~ 258 (916)
T KOG0249|consen 258 R 258 (916)
T ss_pred H
Confidence 3
No 210
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=63.22 E-value=33 Score=29.92 Aligned_cols=53 Identities=25% Similarity=0.405 Sum_probs=39.2
Q ss_pred hhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHH-HHHhhhhHHHHHHHHHh
Q 008232 427 LKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAV-RRLETENAEIRAEMEAS 480 (573)
Q Consensus 427 lkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~v-rrLE~ena~lr~EmEAa 480 (573)
+|..+..+|-.----++||+ .|+++=-+|++++..+ ...|.|++-||+|+|+-
T Consensus 23 ~k~~~~e~e~ki~~Qi~Em~-~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 23 YKHQKDEYEHKINSQIQEMQ-QIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344455555556777875 5778888888888776 47899999999999875
No 211
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=63.17 E-value=1.9e+02 Score=29.84 Aligned_cols=101 Identities=14% Similarity=0.189 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEl 519 (573)
..|.+-+.....--.++.+|.-...+|+.+..++..+|..-+.++..+...=..+..+-......+...+.++..-.+|-
T Consensus 26 ~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea 105 (246)
T PF00769_consen 26 EALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEA 105 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555677777777788888888888888888887777777655555555555556666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhHh
Q 008232 520 ANEKEKIKELQQCLARIQQDQ 540 (573)
Q Consensus 520 a~eK~Kl~~l~qel~qak~~q 540 (573)
..-+.++...+..+..+++..
T Consensus 106 ~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 106 EELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655544
No 212
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=63.14 E-value=1.5e+02 Score=30.41 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhh
Q 008232 509 EKQKAKLQEEIANEKEKIKELQQCLARIQQDQKET 543 (573)
Q Consensus 509 EkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~ 543 (573)
+.+...|...|..-..||.++...+..++......
T Consensus 112 ~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~a 146 (225)
T COG1842 112 EEQVEKLKKQLAALEQKIAELRAKKEALKARKAAA 146 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666655555555444444333
No 213
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=63.04 E-value=1e+02 Score=32.34 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=12.9
Q ss_pred HhhhcHHHHHHHHhhHHHHHHh
Q 008232 406 KLSNDLTELKMLRMEREETQRL 427 (573)
Q Consensus 406 rL~kd~~ELk~LR~Ekee~~rl 427 (573)
.|..-.++|...+.+.+..++.
T Consensus 87 ~l~~a~a~l~~a~a~l~~~~~~ 108 (346)
T PRK10476 87 TVAQAQADLALADAQIMTTQRS 108 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666655443
No 214
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=62.44 E-value=61 Score=33.65 Aligned_cols=107 Identities=19% Similarity=0.350 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHh-h-----------------------hhhh------hhHHHH
Q 008232 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEAS-K-----------------------LSAA------ESVTTC 491 (573)
Q Consensus 442 LsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAa-K-----------------------L~A~------ES~~sc 491 (573)
|.+++..|..+..+++.....+.+||...+.+-.+..+. + ++.. ....+.
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Confidence 467788888888888888899999998888887663332 1 1111 134556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhccccc
Q 008232 492 LEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLICLFPWF 554 (573)
Q Consensus 492 ~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~ 554 (573)
+.+...-..-.+ .--.-|.+|+..+++++..|++|++..+..--++=.|.|-|--+-
T Consensus 81 LpIVtsQRDRFR------~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 81 LPIVTSQRDRFR------QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 666655443332 234568888888888888899998888887777777888775444
No 215
>PRK10869 recombination and repair protein; Provisional
Probab=62.44 E-value=2.9e+02 Score=31.73 Aligned_cols=64 Identities=13% Similarity=0.011 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHhHhhhhhhhhc
Q 008232 487 SVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLAR-----IQQDQKETEVRLICL 550 (573)
Q Consensus 487 S~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~q-----ak~~q~q~E~~~~~~ 550 (573)
|.....+..++=++-|..+..-+.....|++++...+.++.++-++|.+ |+...+.++.-++.|
T Consensus 318 ~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L 386 (553)
T PRK10869 318 SPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHEL 386 (553)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333344444445556666666677888888888888888888888764 555667776666665
No 216
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=62.42 E-value=2.9e+02 Score=31.72 Aligned_cols=10 Identities=30% Similarity=0.521 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 008232 518 EIANEKEKIK 527 (573)
Q Consensus 518 Ela~eK~Kl~ 527 (573)
|...++..|+
T Consensus 325 Eaq~er~~iA 334 (489)
T PF05262_consen 325 EAQQERKEIA 334 (489)
T ss_pred HHHHHHHHHH
Confidence 4444445554
No 217
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=62.33 E-value=42 Score=37.60 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhh
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLET 468 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ 468 (573)
++|.++|.++..+..+++.+++...=|+.
T Consensus 78 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 106 (525)
T TIGR02231 78 KQIRELEAELRDLEDRGDALKALAKFLED 106 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666655555544443
No 218
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=62.16 E-value=85 Score=30.03 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=51.7
Q ss_pred HHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHH
Q 008232 414 LKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLE 493 (573)
Q Consensus 414 Lk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e 493 (573)
+..||.+.+.+++- +.+...++...++||..++...++-+...+.||.+.+.+--- +..+..
T Consensus 21 ~~~l~~~~~~a~~~--------------~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~----l~~re~ 82 (135)
T TIGR03495 21 LRNARADLERANRV--------------LKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARAL----LAQREQ 82 (135)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 45566666644433 456667788888999999999999999999999888776433 334444
Q ss_pred HHHHHHHHHHHHHHHH
Q 008232 494 VAKREKKCLKRLLAWE 509 (573)
Q Consensus 494 ~~kkekk~lkkl~~WE 509 (573)
-.++-+...+.+..|-
T Consensus 83 ~i~rL~~ENe~lR~Wa 98 (135)
T TIGR03495 83 RIERLKRENEDLRRWA 98 (135)
T ss_pred HHHHHHHcCHHHHHHh
Confidence 4444444445555563
No 219
>PRK00106 hypothetical protein; Provisional
Probab=62.15 E-value=3e+02 Score=31.85 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQ 511 (573)
Q Consensus 441 rLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQ 511 (573)
||...|+.|.+-..+||+-...+.+.+.+....+.+++.-+-...+--..+.+........|.+.-.+-.+
T Consensus 98 rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~ 168 (535)
T PRK00106 98 ELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQA 168 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 56666666666666666666666666666555555555555544555555556666666666665544333
No 220
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=62.12 E-value=3.4e+02 Score=32.54 Aligned_cols=120 Identities=23% Similarity=0.338 Sum_probs=69.5
Q ss_pred HHHHHhhHHHHHHhhhhcccch----------hhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhh
Q 008232 414 LKMLRMEREETQRLKKGKQTLE----------DTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLS 483 (573)
Q Consensus 414 Lk~LR~Ekee~~rlkKeKq~lE----------e~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~ 483 (573)
|.-|+...++.+.|-.+|..+| ..-.+-|.-.|..+.-.-.||--+-..-+..-..+.+++.|.|.-||.
T Consensus 407 leeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLK 486 (786)
T PF05483_consen 407 LEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLK 486 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544444 333344555555555555666666666667777777788888877777
Q ss_pred hhhhHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 484 AAESVTTCLEVA----------------------------KREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCL 533 (573)
Q Consensus 484 A~ES~~sc~e~~----------------------------kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel 533 (573)
-.|=..+|..++ +++.+-+|.++..|..+..|..||..-+.++.+-..++
T Consensus 487 N~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev 564 (786)
T PF05483_consen 487 NTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEV 564 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666665544 34444455555555555555555555555555444443
No 221
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=61.06 E-value=93 Score=38.51 Aligned_cols=10 Identities=20% Similarity=-0.034 Sum_probs=7.2
Q ss_pred CCCCCCchhH
Q 008232 364 ETITDDQKDE 373 (573)
Q Consensus 364 ~~vp~D~KdE 373 (573)
.|-++..|++
T Consensus 425 ~~g~r~eke~ 434 (1021)
T PTZ00266 425 HYGGRVDKDH 434 (1021)
T ss_pred ccccccchhH
Confidence 5777777766
No 222
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=60.98 E-value=1.3e+02 Score=29.14 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=20.7
Q ss_pred HHHHhhhhHHHHHHHHHhhhhhhhh
Q 008232 463 VRRLETENAEIRAEMEASKLSAAES 487 (573)
Q Consensus 463 vrrLE~ena~lr~EmEAaKL~A~ES 487 (573)
-.|++.+++.+|.++|++|..-...
T Consensus 133 ~~ki~~ei~~lr~~iE~~K~~~lr~ 157 (177)
T PF07798_consen 133 NNKIDTEIANLRTEIESLKWDTLRW 157 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999876554
No 223
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=60.71 E-value=2.9e+02 Score=31.21 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008232 376 VTMLHQIKDLERQVKERKE 394 (573)
Q Consensus 376 l~Lv~rv~eLq~qlkewtd 394 (573)
--|-.+|++|..||..|..
T Consensus 294 ~~L~k~vQ~L~AQle~~R~ 312 (593)
T KOG4807|consen 294 EALEKEVQALRAQLEAWRL 312 (593)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999975
No 224
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=60.64 E-value=2.9e+02 Score=31.64 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=6.4
Q ss_pred chhhHHhhHHHHHHHH
Q 008232 434 LEDTTMKRLSEMENAL 449 (573)
Q Consensus 434 lEe~T~KrLsEmEnAl 449 (573)
.|+...++-.|+|..+
T Consensus 56 aeeE~~~~R~Ele~el 71 (514)
T TIGR03319 56 AKEEVHKLRAELEREL 71 (514)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 225
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=59.92 E-value=1.4e+02 Score=30.27 Aligned_cols=40 Identities=18% Similarity=0.378 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 505 LLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 505 l~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
+..-+.+...|+..++.++.+|..|++++.++++.+.++.
T Consensus 65 ~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 65 IENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456677777777777777777777777776666655
No 226
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=59.67 E-value=2e+02 Score=28.98 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=8.9
Q ss_pred hhhhhhhhHHHHHHHHH
Q 008232 480 SKLSAAESVTTCLEVAK 496 (573)
Q Consensus 480 aKL~A~ES~~sc~e~~k 496 (573)
.+-+-.|++..+..+..
T Consensus 103 n~s~I~e~V~~ikrL~~ 119 (185)
T PF08703_consen 103 NRSHIQEVVQEIKRLEE 119 (185)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455566666644433
No 227
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=59.62 E-value=1e+02 Score=34.43 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=24.0
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 008232 461 AAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREK 499 (573)
Q Consensus 461 a~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkek 499 (573)
+.+.+...||+.|++ .|+.+..+...|+|+..|-.
T Consensus 292 ~~I~~VarENs~Lqr----QKle~e~~l~a~qeakek~~ 326 (442)
T PF06637_consen 292 AGIERVARENSDLQR----QKLEAEQGLQASQEAKEKAG 326 (442)
T ss_pred hhHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 445555566666554 57778888889998877643
No 228
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=59.60 E-value=1.1e+02 Score=26.13 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=49.6
Q ss_pred hhhhhhhhhhHHHHHHhhhhHHHHHHHH--HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 451 KASGQVDRANAAVRRLETENAEIRAEME--ASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKE 528 (573)
Q Consensus 451 kas~QldrAna~vrrLE~ena~lr~EmE--AaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~ 528 (573)
--..-||+.+..++.|...+.+|...++ ..+|+....+....+.....+ ..+|+..-.+.-..+++=+..-|.++..
T Consensus 11 ~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 11 LLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455678888889999888888877664 456655555555555555555 6666666555555555555555544444
Q ss_pred HH
Q 008232 529 LQ 530 (573)
Q Consensus 529 l~ 530 (573)
|+
T Consensus 90 L~ 91 (92)
T PF14712_consen 90 LQ 91 (92)
T ss_pred hc
Confidence 43
No 229
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.36 E-value=3.2e+02 Score=30.97 Aligned_cols=47 Identities=15% Similarity=0.146 Sum_probs=27.1
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhH
Q 008232 375 VVTMLHQI--KDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMER 421 (573)
Q Consensus 375 il~Lv~rv--~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ek 421 (573)
-.+++.++ ..+-++..+--+||++|--|-+-+.-|++..+..=+.+.
T Consensus 28 ~~~~i~q~~q~~~l~~~ee~e~~~~~~~A~~~~~~kkel~~~~~q~~~~ 76 (438)
T COG4487 28 RYKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQ 76 (438)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 345677788888999977776555444444444433333
No 230
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=58.32 E-value=1.8e+02 Score=33.06 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----hHhhhhhhhhccccccc
Q 008232 510 KQKAKLQEEIANEKEKIKELQQCLARIQQD----QKETEVRLICLFPWFST 556 (573)
Q Consensus 510 kQK~~LQEEla~eK~Kl~~l~qel~qak~~----q~q~E~~~~~~~~~~~~ 556 (573)
-.-.+|++++-.-+.|+.++++.+..+... +..+|-..|-|.-++.+
T Consensus 403 E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 403 EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhh
Confidence 344455555566666666666655544322 22334445555544443
No 231
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=58.30 E-value=2.1e+02 Score=28.80 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 486 ESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANE-----KEKIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 486 ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~e-----K~Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
....|+-.+.-.-.+.+-..|+.+++-.+.++=++.. -.|+.+++.++..++..+.+++.+|.-+
T Consensus 106 r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~i 175 (224)
T cd07623 106 GLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEI 175 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666778888888888888887666666654333 2588899999998888888888777643
No 232
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=58.29 E-value=1.3e+02 Score=36.09 Aligned_cols=89 Identities=22% Similarity=0.259 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhhhcHHHHH-HHHhhHHHHHHhhhhcccchhhHH-hhHHHHHHHHHhhhhhhhh
Q 008232 384 DLERQVKERKEWAHQKAMQAAR---KLSNDLTELK-MLRMEREETQRLKKGKQTLEDTTM-KRLSEMENALRKASGQVDR 458 (573)
Q Consensus 384 eLq~qlkewtdWA~qKvmQaa~---rL~kd~~ELk-~LR~Ekee~~rlkKeKq~lEe~T~-KrLsEmEnAl~kas~Qldr 458 (573)
.+++...-..+=-+|++|++++ +|+..+...+ ++.+++|+.++++|++-+.|+.-- .-=.|.|..|......++.
T Consensus 513 ~l~~~~~~k~~~~~q~~~~~~~~~~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~~~~~~~i~~l~~el~e 592 (809)
T KOG0247|consen 513 ILQNNKSLKEKECRQKLMNAQLESQMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYSIEILESTEYEEEIEALDQELEE 592 (809)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhHHHHHHHHh
Confidence 4566666667778999999886 4666666554 467889999999998888776511 0001555555555555555
Q ss_pred hhHHHHHHhhhhHH
Q 008232 459 ANAAVRRLETENAE 472 (573)
Q Consensus 459 Ana~vrrLE~ena~ 472 (573)
.|+.-++-..+.+.
T Consensus 593 q~~~~~~~~~~~~~ 606 (809)
T KOG0247|consen 593 QKMELQQKFSEKKK 606 (809)
T ss_pred hhHHHHhhccchhH
Confidence 55554444444333
No 233
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=57.90 E-value=1.7e+02 Score=31.03 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 486 ESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQ 530 (573)
Q Consensus 486 ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~ 530 (573)
+....-.|+..|...+-.||-.||-..+.|.+.|.--++|+.+.+
T Consensus 218 ~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 218 QKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444555555566666777788888888888888888876653
No 234
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=56.56 E-value=54 Score=36.19 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARI 536 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qa 536 (573)
.++.....+..|.++|+..+.++.+|++++++.
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555566667777777777777777666664
No 235
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=56.49 E-value=3.1e+02 Score=30.25 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=32.0
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHh
Q 008232 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEAS 480 (573)
Q Consensus 439 ~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAa 480 (573)
.-+|.++|..+.......---|-.|+.+..+++.+++++.+.
T Consensus 253 ~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 253 DGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhh
Confidence 456777777777777777777788888888888888887553
No 236
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=55.86 E-value=1.7e+02 Score=27.13 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=49.0
Q ss_pred HHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHh
Q 008232 401 MQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEAS 480 (573)
Q Consensus 401 mQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAa 480 (573)
|+-..+|+.-..+|-.....++ +|.++|. ++++++..-.+|.+..+..+..|+.+++++++.+|.-
T Consensus 12 ~el~n~La~Le~slE~~K~S~~---eL~kqkd-----------~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQG---ELAKQKD-----------QLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH---HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHH---HHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555544444444 4444443 3789999999999999999999999999999999986
Q ss_pred hhh
Q 008232 481 KLS 483 (573)
Q Consensus 481 KL~ 483 (573)
|+.
T Consensus 78 K~a 80 (107)
T PF09304_consen 78 KQA 80 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 237
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=55.23 E-value=3.1e+02 Score=29.80 Aligned_cols=110 Identities=22% Similarity=0.383 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcH----HHHHHHHhhHHHHHHhhhhcccchhhHH-hhHHHHHHHHHhhhhhhh-
Q 008232 384 DLERQVKERKEWAHQKAMQAARKLSNDL----TELKMLRMEREETQRLKKGKQTLEDTTM-KRLSEMENALRKASGQVD- 457 (573)
Q Consensus 384 eLq~qlkewtdWA~qKvmQaa~rL~kd~----~ELk~LR~Ekee~~rlkKeKq~lEe~T~-KrLsEmEnAl~kas~Qld- 457 (573)
+|+++|..-.+|---|.|..-.+|-+++ .+|..||.||-+.+..-+--|.+==|++ ||.+.|+..=+.-..+|+
T Consensus 124 ~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 124 ELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5566666666665556665555554332 3445555555544432221111111233 777777666555444444
Q ss_pred ----------------------hhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHH
Q 008232 458 ----------------------RANAAVRRLETENAEIRAEMEASKLSAAESVTTCLE 493 (573)
Q Consensus 458 ----------------------rAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e 493 (573)
+..+-|+.|-.|.+-||++|-++...-++..+...+
T Consensus 204 ~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~ 261 (310)
T PF09755_consen 204 PVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQ 261 (310)
T ss_pred ccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677777777777777666655555554433
No 238
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=55.22 E-value=1.2e+02 Score=26.94 Aligned_cols=87 Identities=17% Similarity=0.308 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHH--hhH------HHHHHH
Q 008232 377 TMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTM--KRL------SEMENA 448 (573)
Q Consensus 377 ~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~--KrL------sEmEnA 448 (573)
.++.+.+.|+.++ +++++. +..|-.++.|++...+|-..|++++. +-+ ...+-|
T Consensus 3 ~~~~~~q~l~~~~--------~~l~~~----------~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea 64 (105)
T cd00632 3 EQLAQLQQLQQQL--------QAYIVQ----------RQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEA 64 (105)
T ss_pred HHHHHHHHHHHHH--------HHHHHH----------HHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHH
Confidence 3566777777764 344454 44445555555555555557755533 221 123444
Q ss_pred HHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 449 LRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 449 l~kas~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
+..-..+++.....+.+|+.+...+..+|...|
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566666666666666666665544
No 239
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=55.05 E-value=3.1e+02 Score=29.71 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHhh
Q 008232 391 ERKEWAHQKAMQAARKLSNDLTELKMLRME 420 (573)
Q Consensus 391 ewtdWA~qKvmQaa~rL~kd~~ELk~LR~E 420 (573)
.-.+|-.+++-++..+|..-...|...|.+
T Consensus 171 ~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 171 KAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666666665555555555544
No 240
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=54.94 E-value=2e+02 Score=27.59 Aligned_cols=28 Identities=7% Similarity=0.404 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHh
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLE 467 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE 467 (573)
+.|.++++-+....++++.-......+.
T Consensus 95 ~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444455555555544444443333333
No 241
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=54.89 E-value=3.7e+02 Score=30.65 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008232 518 EIANEKEKIKELQQCLARIQ 537 (573)
Q Consensus 518 Ela~eK~Kl~~l~qel~qak 537 (573)
++...+.++.++++++.+.-
T Consensus 347 ~le~L~~el~~l~~~l~~~a 366 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAA 366 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444555554444433
No 242
>PLN02718 Probable galacturonosyltransferase
Probab=54.87 E-value=1.3e+02 Score=35.37 Aligned_cols=80 Identities=24% Similarity=0.276 Sum_probs=61.7
Q ss_pred HhhhcHHHHHHHHhhHHHHHHhhhhccc---chhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhh
Q 008232 406 KLSNDLTELKMLRMEREETQRLKKGKQT---LEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKL 482 (573)
Q Consensus 406 rL~kd~~ELk~LR~Ekee~~rlkKeKq~---lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL 482 (573)
++..-..=-+.||+-..|.||.=-+--. |-.+..+++.+||..|.||.....-..+.+++|.+-.-..-.|+.++|.
T Consensus 185 ~~~~~~~~~~el~~~i~e~~~~l~~~~~d~~lp~~~~~~~~~m~~~~~~a~~~~~d~~~~~~klr~~~~~~e~~~~~~~~ 264 (603)
T PLN02718 185 PPGSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYKASRVFPNCPAIATKLRAMTYNTEEQVRAQKN 264 (603)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444456677777777776443322 7778889999999999999999999999999999888888888887776
Q ss_pred hhh
Q 008232 483 SAA 485 (573)
Q Consensus 483 ~A~ 485 (573)
+++
T Consensus 265 q~~ 267 (603)
T PLN02718 265 QAA 267 (603)
T ss_pred HHH
Confidence 654
No 243
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=54.80 E-value=3.1e+02 Score=29.70 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHH
Q 008232 377 TMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKML 417 (573)
Q Consensus 377 ~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~L 417 (573)
+|-.|+.++. ++.|+. ++||..++-..|...+..|+.+
T Consensus 5 ~~~~q~a~~~--lk~~~~-~~qk~l~~~~~l~~~~~k~~~~ 42 (332)
T TIGR01541 5 LLTQQIADRK--LKKLNT-ADEKSLQSRSDEIIALIKLEKL 42 (332)
T ss_pred HHHHHHHHHH--HhhhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555444 344443 5566666655555544444333
No 244
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=54.65 E-value=18 Score=40.81 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=15.9
Q ss_pred HHHHHhhhhHHHHHHHHHhhh
Q 008232 462 AVRRLETENAEIRAEMEASKL 482 (573)
Q Consensus 462 ~vrrLE~ena~lr~EmEAaKL 482 (573)
.+.+||.||+.|+.+|+|++-
T Consensus 105 KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 105 RIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 344888888888888887654
No 245
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=53.99 E-value=1.5e+02 Score=34.85 Aligned_cols=97 Identities=20% Similarity=0.211 Sum_probs=73.1
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 458 RANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (573)
Q Consensus 458 rAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak 537 (573)
.+...|-+|.+|+.+++.+.+..-..-+.-..++..+..+-..+..|-.-.+.....-.++-..-++-..+|+..+.++.
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q 162 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQLQ 162 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777777666677777777888888888777777777778888888888899999999999
Q ss_pred hHhHhhhhhhhhcccccc
Q 008232 538 QDQKETEVRLICLFPWFS 555 (573)
Q Consensus 538 ~~q~q~E~~~~~~~~~~~ 555 (573)
..+...+.. --+.|-||
T Consensus 163 ~~~R~a~~~-v~~~~~~s 179 (632)
T PF14817_consen 163 DIQRKAKVE-VEFGPSTS 179 (632)
T ss_pred HHHhhccCc-eeecCCcc
Confidence 998877666 33444443
No 246
>PRK10093 primosomal replication protein N''; Provisional
Probab=53.54 E-value=1.9e+02 Score=28.81 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=58.2
Q ss_pred hhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--------------------H
Q 008232 452 ASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEK--------------------Q 511 (573)
Q Consensus 452 as~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEk--------------------Q 511 (573)
.++++++++=.+.||-+.+..|..|.-..+|+..|....=.....++ +..=|-||. +
T Consensus 61 ~~~~~~~~~flaEkL~aQi~ALqRElatq~lR~~e~~~~~~~~~~~~---~lqHQd~ERRL~~Mv~dre~~L~~a~~~~~ 137 (171)
T PRK10093 61 EQQQLPQVAWLAEHLAAQLEAIAREAAAWSLREWDSAPPGLARWQRK---RIQHQEFERRLLEMVAERRARLARATDLVE 137 (171)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCCCCCchhHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 36788889999999999999999999999999998843221111111 114445553 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHh
Q 008232 512 KAKLQEEIANEKEKIKELQQCLARIQQDQKE 542 (573)
Q Consensus 512 K~~LQEEla~eK~Kl~~l~qel~qak~~q~q 542 (573)
.-+||.||++-...|..=++-|..++..+..
T Consensus 138 qq~lq~el~alegRL~RCrqAl~~IE~~Ier 168 (171)
T PRK10093 138 QQTLHREVEAYEGRLARCRHALEKIENVLAR 168 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777776666666666666665554443
No 247
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=53.19 E-value=1.1e+02 Score=32.48 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=38.2
Q ss_pred hhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhh
Q 008232 407 LSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSA 484 (573)
Q Consensus 407 L~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A 484 (573)
|...+.+|+..+.+.+-.++|.+..-. +...+.+.++.+..+..+++.+.+.+..++...+..+..++...+.|
T Consensus 115 l~~a~~~l~~a~~~~~r~~~L~~~g~i----s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~A 188 (370)
T PRK11578 115 RQQAEAELKLARVTLSRQQRLAKTQAV----SQQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVA 188 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEEC
Confidence 334444455555555544555443221 33445556666666666666666655555555555555555444443
No 248
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=52.84 E-value=3e+02 Score=31.55 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=6.2
Q ss_pred HHHHHHhhhcHHHHHH
Q 008232 401 MQAARKLSNDLTELKM 416 (573)
Q Consensus 401 mQaa~rL~kd~~ELk~ 416 (573)
.++..++-.++.++..
T Consensus 230 ~k~kkkae~~q~e~dk 245 (489)
T PF05262_consen 230 DKEKKKAEKKQQELDK 245 (489)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333334444433
No 249
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=52.82 E-value=35 Score=31.21 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhh
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAE 486 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~E 486 (573)
-+|.+||.-|.....++..-...+..|.-||+.||.|-+.-+-.-.+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999888765544433
No 250
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=52.75 E-value=1.6e+02 Score=31.80 Aligned_cols=93 Identities=23% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 455 QVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (573)
Q Consensus 455 QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~ 534 (573)
++|-=.--++.||-||-.||.|-.--+--.......=+.+..- |.+.|-.=..|-+-|++||+...+-...-|+|+.
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~d---cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt 237 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLD---CVKQLSEANQQIASLSEELARKTEENRRQQEEIT 237 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHH---HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHhHhhhhhhhhc
Q 008232 535 RIQQDQKETEVRLICL 550 (573)
Q Consensus 535 qak~~q~q~E~~~~~~ 550 (573)
+.-...-..+.|.+-+
T Consensus 238 ~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 238 SLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHHHHHHHHHHHHHHH
No 251
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=52.15 E-value=2.7e+02 Score=28.28 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008232 470 NAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKR 504 (573)
Q Consensus 470 na~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkk 504 (573)
.+.|+..|..+.++.+|-....+|+...|-+.=..
T Consensus 133 l~~L~~~l~~~dv~~~ek~r~vlea~~~E~~yg~~ 167 (251)
T PF11932_consen 133 LARLRAMLDDADVSLAEKFRRVLEAYQIEMEYGRT 167 (251)
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhCCc
Confidence 47789999999999999999888888877654333
No 252
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=51.96 E-value=43 Score=30.49 Aligned_cols=34 Identities=44% Similarity=0.701 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 494 VAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCL 533 (573)
Q Consensus 494 ~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel 533 (573)
+-++|++-|++| |.+|++|++.++.+|.+|++.+
T Consensus 66 ~r~~EkEqL~~L------k~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 66 FRKKEKEQLKKL------KEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhc
Confidence 556777777776 5678888888888888887765
No 253
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=51.73 E-value=2.6e+02 Score=29.05 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHhHhHhhhhhhhhcccccccccccc
Q 008232 500 KCLKRLLAWEKQKAKLQEEI-A----NEKEKIKELQQCLARIQQDQKETEVRLICLFPWFSTHKIST 561 (573)
Q Consensus 500 k~lkkl~~WEkQK~~LQEEl-a----~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~~~~~~~~ 561 (573)
.+..++|..|.+++..=-++ - ........+.+..+.+++...++.+. +-+--|...|+..+
T Consensus 193 ~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~~~~~~~e~ir~~le~~d~~-~Di~~fi~~~gTG~ 258 (269)
T cd07673 193 ETAQKFQDIEETHLIRIKEIIGSYSNSVKEIHIQIGQVHEEFINNMANTTVE-SLIQKFAESKGTGK 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCHH-HHHHHHHHhcCCCC
Confidence 34456666666655432221 1 12222234445555555555555543 33333444444433
No 254
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=51.65 E-value=5.1e+02 Score=31.24 Aligned_cols=19 Identities=47% Similarity=0.592 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008232 507 AWEKQKAKLQEEIANEKEK 525 (573)
Q Consensus 507 ~WEkQK~~LQEEla~eK~K 525 (573)
..|..-.+||+|+..-+.+
T Consensus 633 ~~eikVn~L~~E~e~~kk~ 651 (786)
T PF05483_consen 633 VYEIKVNKLQEELENLKKK 651 (786)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3344444555555544443
No 255
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=51.61 E-value=3.5e+02 Score=29.34 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=26.8
Q ss_pred HHHHHHHHhhHHH--HHHhhhhcccchhh--HHhhHHHHHHHHH
Q 008232 411 LTELKMLRMEREE--TQRLKKGKQTLEDT--TMKRLSEMENALR 450 (573)
Q Consensus 411 ~~ELk~LR~Ekee--~~rlkKeKq~lEe~--T~KrLsEmEnAl~ 450 (573)
+.|+-+||.|.+- ++-..||+.-+||. ...+..+++++|+
T Consensus 5 q~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lK 48 (305)
T PF14915_consen 5 QDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLK 48 (305)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888774 45566778888887 3355566665554
No 256
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=51.48 E-value=1.8e+02 Score=29.37 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhccc
Q 008232 489 TTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLICLFP 552 (573)
Q Consensus 489 ~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~~ 552 (573)
.+.-++-.+=....-.+..|..+..-++..|.....-...+++.+..+.+...+|+.+..-+++
T Consensus 78 ~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~ 141 (240)
T PF12795_consen 78 LSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPP 141 (240)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3455666666777889999999999999999999999999999999999999999999887654
No 257
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=51.20 E-value=3.2e+02 Score=28.86 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhcHHHHHHHH
Q 008232 380 HQIKDLERQVKERKEWAHQK-------AMQAARKLSNDLTELKMLR 418 (573)
Q Consensus 380 ~rv~eLq~qlkewtdWA~qK-------vmQaa~rL~kd~~ELk~LR 418 (573)
.++++++.+|++|.+=...+ |-|.-.|+.+-+.||..|+
T Consensus 63 ~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999877655 4455666777777777766
No 258
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=50.60 E-value=52 Score=26.90 Aligned_cols=48 Identities=25% Similarity=0.303 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhh
Q 008232 501 CLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 501 ~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~ 548 (573)
...+......|...||.+|+..+.+..+|++++.+.+...+-+|..=|
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 345667788899999999999999999999999999777777775544
No 259
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=49.87 E-value=2.3e+02 Score=27.48 Aligned_cols=89 Identities=27% Similarity=0.327 Sum_probs=50.5
Q ss_pred HHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH--------HHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 008232 462 AVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLK--------RLLA-----WEKQKAKLQEEIANEKEKIKE 528 (573)
Q Consensus 462 ~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lk--------kl~~-----WEkQK~~LQEEla~eK~Kl~~ 528 (573)
....+.+..+++|.||...--+......++.+-+++|-..|+ ++.+ +.-+|.-..+|.+....||.+
T Consensus 52 ~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e 131 (177)
T PF07798_consen 52 QEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQE 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344455556666666665555555555555555555544433 2332 445667777888888888877
Q ss_pred HHHHHH-HHHhHhHhhh-hhhhhc
Q 008232 529 LQQCLA-RIQQDQKETE-VRLICL 550 (573)
Q Consensus 529 l~qel~-qak~~q~q~E-~~~~~~ 550 (573)
+...+. .+.+...+|| .||.-+
T Consensus 132 ~~~ki~~ei~~lr~~iE~~K~~~l 155 (177)
T PF07798_consen 132 LNNKIDTEIANLRTEIESLKWDTL 155 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655443 2334555555 566544
No 260
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=49.83 E-value=27 Score=28.79 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 441 rLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
|+.|+||.|.+.++. +--++.||.+||.+.|.-+
T Consensus 1 Ri~elEn~~~~~~~~-------i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 1 RIDELENELPRIESS-------INTVKKENEEISESVEKIE 34 (55)
T ss_pred CHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 789999999988854 5567778888888777543
No 261
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=49.64 E-value=60 Score=28.97 Aligned_cols=37 Identities=30% Similarity=0.243 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhh
Q 008232 509 EKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEV 545 (573)
Q Consensus 509 EkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~ 545 (573)
.+|-++||+|....+..++..+.++..++..|+.-|.
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~ 65 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEEN 65 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 4567899999999999999999999999998888774
No 262
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=49.52 E-value=1.7e+02 Score=31.14 Aligned_cols=120 Identities=28% Similarity=0.371 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHH--HHHhhhhhhhh---hhHHHHHHhhhhH
Q 008232 397 HQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMEN--ALRKASGQVDR---ANAAVRRLETENA 471 (573)
Q Consensus 397 ~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEn--Al~kas~Qldr---Ana~vrrLE~ena 471 (573)
++.-+.-|++|++-+.|+...=--+|. +-.-||++. +-=|.+|=|| +..+|+.=+|| |.+.|+.||.-|.
T Consensus 160 kenylrfa~KLG~~~~efn~~f~she~-~l~dkekEl----~sfK~sEeeNar~V~kAnsVldRmk~aEaqvneLEvsN~ 234 (311)
T PF04642_consen 160 KENYLRFAGKLGKLILEFNSVFLSHED-QLSDKEKEL----ESFKRSEEENARAVEKANSVLDRMKEAEAQVNELEVSNI 234 (311)
T ss_pred hhhhhhhHHHHHHHHHHhhcccccccc-ccccHHHHH----HHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhheecccH
Confidence 345567788999988887653222210 000011100 0112233333 35666666665 5678999999999
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHh
Q 008232 472 EIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKE 542 (573)
Q Consensus 472 ~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q 542 (573)
.|-+-+|+.|=- ..++..+| +.+.-||-++.+||..+.++-+..--.+.+
T Consensus 235 DLsaKLe~gkna-------Y~~~ieke--------------~q~raeL~acEEkl~kmeE~Qa~~l~~aR~ 284 (311)
T PF04642_consen 235 DLSAKLEPGKNA-------YLAAIEKE--------------NQARAELNACEEKLKKMEEEQAEMLRAART 284 (311)
T ss_pred HHHHhhcCCcch-------HHHHHhhH--------------HHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 999888887743 33333332 345567777777777766554443333333
No 263
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=49.35 E-value=2.2e+02 Score=26.38 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHhhhhhh
Q 008232 519 IANEKEKIKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 519 la~eK~Kl~~l~qel~qak~~q~q~E~~~ 547 (573)
+...+..|.+|..+...++..-.+.|+.|
T Consensus 68 ~~~~~~~~~~l~~~~~~a~~~l~~~e~sw 96 (132)
T PF07926_consen 68 LQELQQEINELKAEAESAKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333333334444444433334444444
No 264
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.71 E-value=4.7e+02 Score=30.03 Aligned_cols=150 Identities=19% Similarity=0.283 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhcH----------HHHHHHHhhHHHHHHhhhhcccchhhHHhhH
Q 008232 379 LHQIKDLERQVKERKEWAHQKAMQAAR------KLSNDL----------TELKMLRMEREETQRLKKGKQTLEDTTMKRL 442 (573)
Q Consensus 379 v~rv~eLq~qlkewtdWA~qKvmQaa~------rL~kd~----------~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrL 442 (573)
|+++++|+..|+.-++=++.|+|-++. +|.+|- .-.+..||.+++..+. =+.|+
T Consensus 344 ~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Ki-------l~etr--- 413 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKI-------LEETR--- 413 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHH---
Confidence 689999999999999988877776642 233321 1223445555544443 22232
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 443 SEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVT----TCLEVAKREKKCLKRLLAWEKQKAKLQEE 518 (573)
Q Consensus 443 sEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~----sc~e~~kkekk~lkkl~~WEkQK~~LQEE 518 (573)
|+...+..-+++|+|.-|.+-.|=..-+. -=.|++ .|.++.| +|.|++..-. ---..-+|-.-|+.+
T Consensus 414 -eLqkq~ns~se~L~Rsfavtdellf~sak---hddhvR-~aykllt~iH~nc~ei~E~i~----~tg~~~revrdlE~q 484 (521)
T KOG1937|consen 414 -ELQKQENSESEALNRSFAVTDELLFMSAK---HDDHVR-LAYKLLTRIHLNCMEILEMIR----ETGALKREVRDLESQ 484 (521)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHhc---cCHHHH-HHHHHHHHHHHHHHHHHHHHH----HcchHHHHHHHHHHH
Confidence 45667777899999999988865432110 001222 5666665 5888776432 223344566677777
Q ss_pred HHHHHHH-----HHHHHHHHHHHHhHhHhhhhhh
Q 008232 519 IANEKEK-----IKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 519 la~eK~K-----l~~l~qel~qak~~q~q~E~~~ 547 (573)
|-.|+.| +-+|++.+..+.+...++-.++
T Consensus 485 I~~E~~k~~l~slEkl~~Dyqairqen~~L~~~i 518 (521)
T KOG1937|consen 485 IYVEEQKQYLKSLEKLHQDYQAIRQENDQLFSEI 518 (521)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776544 3455555555555555544443
No 265
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=48.41 E-value=50 Score=38.11 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHhHhhhhhhhhcc
Q 008232 500 KCLKRLLAWEKQKAKLQEEIANE-------KEKIKELQQCLARIQQDQKETEVRLICLF 551 (573)
Q Consensus 500 k~lkkl~~WEkQK~~LQEEla~e-------K~Kl~~l~qel~qak~~q~q~E~~~~~~~ 551 (573)
+.-+++..+|.++..|++++++. ..++.++.+++++++...++.+.+|--|-
T Consensus 567 ~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 567 RLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556788888888888888653 23899999999999999999999997663
No 266
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=48.20 E-value=48 Score=35.35 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=24.6
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 008232 438 TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEA 479 (573)
Q Consensus 438 T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEA 479 (573)
.+.+|.+++..|..+..+|+.....+.+++.+.+.|+.+.+.
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666666666666666666666666655544
No 267
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=48.10 E-value=1.4e+02 Score=25.31 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=40.4
Q ss_pred hhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 454 GQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCL 533 (573)
Q Consensus 454 ~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel 533 (573)
.+||+==....+|..||+.||.+. ..|..+++.|.+=...-++||..+-..|
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~----------------------------~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQE----------------------------KTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666677888999999998764 4688888888888888888887766555
Q ss_pred H
Q 008232 534 A 534 (573)
Q Consensus 534 ~ 534 (573)
-
T Consensus 59 k 59 (65)
T TIGR02449 59 K 59 (65)
T ss_pred h
Confidence 3
No 268
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=48.09 E-value=54 Score=33.32 Aligned_cols=54 Identities=22% Similarity=0.363 Sum_probs=38.3
Q ss_pred HHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhh
Q 008232 412 TELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETEN 470 (573)
Q Consensus 412 ~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~en 470 (573)
+.|+.|+.+++....|-+... |+.-+.+.|+.|....+|+|+.+...+.|+...
T Consensus 139 arl~~l~~~~~rl~~ll~ka~-----~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 139 ARLKNLEAEEERLLELLEKAK-----TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346666666665544433222 566688999999999999999998888887643
No 269
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=47.69 E-value=1.6e+02 Score=32.28 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 008232 485 AESVTTCLEVAKREKKCLKRLL 506 (573)
Q Consensus 485 ~ES~~sc~e~~kkekk~lkkl~ 506 (573)
.|....+.-....-+-.++..+
T Consensus 150 ~~~~~~a~~a~~~A~A~~~~a~ 171 (352)
T COG1566 150 REELDRARAALQAAEAALAAAQ 171 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444444444444444444
No 270
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=47.43 E-value=61 Score=33.34 Aligned_cols=124 Identities=23% Similarity=0.235 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHh
Q 008232 372 DEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRK 451 (573)
Q Consensus 372 dEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~k 451 (573)
|+=|=+|-..++.| .++++-..|-..|..+.+..++.+..+|...+ .+.+..+++.-+.+...-.|+=.+|+.-++.
T Consensus 67 e~~le~Le~el~~l-~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~--~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~ 143 (256)
T PF14932_consen 67 EEDLEALEEELEAL-QEYKELYEQLRNKLQQLDSSLSQELSELEGKE--EEAQKKLKKAQKELSAECSKLNNELNQLLGE 143 (256)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777 66777788888888888888999988888766 3344555555555555555555555555554
Q ss_pred hhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 452 ASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEK 510 (573)
Q Consensus 452 as~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEk 510 (573)
.+.++ .+-+..... +..---.-=|-..+-.-..++..+.+-|-.|=+
T Consensus 144 v~~l~-----------~~~~~~~~~-~~~~~~~flsq~~l~~Y~~~ee~~t~~L~~y~k 190 (256)
T PF14932_consen 144 VSKLA-----------SELAHAHSG-QQQNPPVFLSQMPLEQYLSQEEQFTKYLTSYTK 190 (256)
T ss_pred HHHHH-----------HHHHHhccc-ccCCCCchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 44333 221111100 000000111233455667778888888877765
No 271
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=47.43 E-value=1.5e+02 Score=30.94 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhh
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~ 548 (573)
+++.++.+...++..+. ...+..++.++.+++..-++.+..+.
T Consensus 160 ~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~l~~a~~~l~ 202 (331)
T PRK03598 160 TLKSAQDKLSQYREGNR--PQDIAQAKASLAQAQAALAQAELNLQ 202 (331)
T ss_pred HHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444443332 24556666666666666666665553
No 272
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=47.13 E-value=2.1e+02 Score=33.22 Aligned_cols=63 Identities=19% Similarity=0.317 Sum_probs=50.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhcHHHHHHHHhhHHHHHHh
Q 008232 365 TITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARK----------LSNDLTELKMLRMEREETQRL 427 (573)
Q Consensus 365 ~vp~D~KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~r----------L~kd~~ELk~LR~Ekee~~rl 427 (573)
-+|..++.-++=++|+|++|+-.|+.--++=-++|+-|..|- |+.-+.++|.+|+|+||...+
T Consensus 190 ~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~ 262 (596)
T KOG4360|consen 190 LTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEH 262 (596)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456667777777999999999999999999999999888763 444556788999999976543
No 273
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=47.02 E-value=73 Score=37.42 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=52.7
Q ss_pred HHHHHhhHHHHHHhhhh---cccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhh
Q 008232 414 LKMLRMEREETQRLKKG---KQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA 485 (573)
Q Consensus 414 Lk~LR~Ekee~~rlkKe---Kq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ 485 (573)
.+.||+-..|.||.=-+ -..|+-+..+|+..||..|.+|.....-..+.++||..-.-....|+.++|.+++
T Consensus 225 ~~eL~~~i~e~~r~ls~a~~d~dlp~~~~~k~~~M~~~l~~ak~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~ 299 (657)
T PLN02910 225 YVSLMKQFRENKRAIGEATSDAELHSSALDQAKAMGHVLSIAKDQLYDCHTMARKLRAMLQSTERKVDALKKKSA 299 (657)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444222 1245666788999999999999999999999999999888888888877776643
No 274
>PLN02769 Probable galacturonosyltransferase
Probab=46.83 E-value=68 Score=37.59 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=54.3
Q ss_pred hhhcHHHHHHHHhhHHHHHHhhhhccc---chhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhh
Q 008232 407 LSNDLTELKMLRMEREETQRLKKGKQT---LEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKL 482 (573)
Q Consensus 407 L~kd~~ELk~LR~Ekee~~rlkKeKq~---lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL 482 (573)
+.....=.+.||+-..|.||.=-|--. |..+..+++.+||..|.+|.....--++.++||.+-.-....|+.+.|-
T Consensus 203 ~~~~~~l~~el~~~i~e~~~~l~~~~~d~dlp~~~~~~~~~m~~~~~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~k 281 (629)
T PLN02769 203 LPGQEKLTRELKQNIQEHERVLSESITDADLPPFIQKKLEKMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMK 281 (629)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344456677777777776444333 6667779999999999999999988888899988766666666664443
No 275
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=46.67 E-value=1.1e+02 Score=35.31 Aligned_cols=179 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred CCCCchhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhh
Q 008232 366 ITDDQKDEIVVTMLH----QIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKR 441 (573)
Q Consensus 366 vp~D~KdEmil~Lv~----rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~Kr 441 (573)
+|.+++|+++-.|.. ++.|++.+.. ++..-+.-+++.+-..-|..|+...++..-+.+.....+..+-..
T Consensus 13 ~~~~~~~~~l~~L~~lg~vhi~~~~~~~~------~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~e 86 (646)
T PRK05771 13 TLKSYKDEVLEALHELGVVHIEDLKEELS------NERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEE 86 (646)
T ss_pred EEHHHHHHHHHHHHhCCCEEEeecccccc------hhHHhHHHHHHHHHHHHHHHHHHhccccccchhhhccccccCHHH
Q ss_pred H-HHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHH---------HHHHHHHHHHHH--
Q 008232 442 L-SEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKR---------EKKCLKRLLAWE-- 509 (573)
Q Consensus 442 L-sEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kk---------ekk~lkkl~~WE-- 509 (573)
+ ..++..+.+.-.++..-+...++|+.|..+++.+.+.-+-.+.=+..--.....+ .+...+++..|+
T Consensus 87 ~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~~~ld~~l~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~ 166 (646)
T PRK05771 87 LIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDV 166 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCHHHhCCCCcEEEEEEEecchhhhhHHhhccC
Q ss_pred ---------------------HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 510 ---------------------KQKAKLQEEIAN-------------EKEKIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 510 ---------------------kQK~~LQEEla~-------------eK~Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
.+...+.+.+.. =++.+.+++++++++++..++++.+.+.+
T Consensus 167 ~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~l~~~~f~~~~~p~~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~ 241 (646)
T PRK05771 167 ENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKEL 241 (646)
T ss_pred ceEEEEEecCCcEEEEEEEEhhhHHHHHHHHHHCCCEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 276
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=46.64 E-value=3.5e+02 Score=32.54 Aligned_cols=127 Identities=17% Similarity=0.251 Sum_probs=64.7
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHH----HHHHHHhhhhhhhhhhHHHHHHhhhhHHHH
Q 008232 399 KAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSE----MENALRKASGQVDRANAAVRRLETENAEIR 474 (573)
Q Consensus 399 KvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsE----mEnAl~kas~QldrAna~vrrLE~ena~lr 474 (573)
-+...|++++=+..-+..=+.-..+ +...+| .-+.+|.+ +|.....+....+.+...-++||.+..+++
T Consensus 489 ~a~~iA~~~Glp~~ii~~A~~~~~~------~~~~~~-~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 561 (782)
T PRK00409 489 NAFEIAKRLGLPENIIEEAKKLIGE------DKEKLN-ELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ 561 (782)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhh------hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889988887777654443221 111111 12233332 333333334444444455556666666666
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 008232 475 AEMEASKLSAAESVTTCLEVAKRE-KKCLKRLLAWEKQ--KAKLQEEIANEKEKIKELQQC 532 (573)
Q Consensus 475 ~EmEAaKL~A~ES~~sc~e~~kke-kk~lkkl~~WEkQ--K~~LQEEla~eK~Kl~~l~qe 532 (573)
.+.+.....|.+-+....+-++++ ++.+++++.-.++ +..-++++.+-++++.++.+.
T Consensus 562 ~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 622 (782)
T PRK00409 562 EEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEK 622 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhh
Confidence 666666666666666665555554 5556666532211 112344444445555554443
No 277
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=46.63 E-value=4.8e+02 Score=29.56 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHH
Q 008232 440 KRLSEMENALRKASGQVDRANAA 462 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~ 462 (573)
.||.+++.||..-.|-+..+...
T Consensus 162 ekl~lld~al~~~~~~~~~~~~~ 184 (511)
T PF09787_consen 162 EKLSLLDEALKREDGNAITAVVE 184 (511)
T ss_pred HHHHHHHHHHHhcCccHHHHHHH
Confidence 45556666666555555555444
No 278
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=46.31 E-value=2.8e+02 Score=27.52 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHH
Q 008232 386 ERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREE 423 (573)
Q Consensus 386 q~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee 423 (573)
+...+.-..+...|++|+-.....-..+++.|..|+++
T Consensus 101 ~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~ 138 (189)
T PF10211_consen 101 QTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666778888888855444444455555554443
No 279
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=46.14 E-value=4.4e+02 Score=32.50 Aligned_cols=53 Identities=30% Similarity=0.361 Sum_probs=37.2
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 464 RRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQC 532 (573)
Q Consensus 464 rrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qe 532 (573)
-++|.|-|.+++||+-.|.-- |+-+.+.-|.-|+++..|+...+..|.++.+-
T Consensus 1055 ~kie~efAa~eaemdeik~~~----------------~edrakqkei~k~L~ehelenLrnEieklndk 1107 (1424)
T KOG4572|consen 1055 AKIEDEFAAIEAEMDEIKDGK----------------CEDRAKQKEIDKILKEHELENLRNEIEKLNDK 1107 (1424)
T ss_pred hhHHHHHHHHHhhhhhhhhhh----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999887543 44455666667777777766666666665543
No 280
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=46.01 E-value=4.5e+02 Score=29.02 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=64.0
Q ss_pred HHhhHHHHHHHHHhhhhhh-------hhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 438 TMKRLSEMENALRKASGQV-------DRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEK 510 (573)
Q Consensus 438 T~KrLsEmEnAl~kas~Ql-------drAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEk 510 (573)
..+++..++..+.+..... ..+|...+.|.....+++.+.++.+.+. .+......+-+..+.++-..+.
T Consensus 280 l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~----~~l~~~~~~~~~~~~~~~~~~~ 355 (498)
T TIGR03007 280 TKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARV----AELTARIERLESLLRTIPEVEA 355 (498)
T ss_pred HHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhchHHHH
Confidence 3455666666655443221 1134444556666666666666544333 3344455555666777888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 008232 511 QKAKLQEEIANEKEKIKELQQCLARIQQDQK 541 (573)
Q Consensus 511 QK~~LQEEla~eK~Kl~~l~qel~qak~~q~ 541 (573)
+-..||.|....+.....+.+.+++++-.+.
T Consensus 356 el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~ 386 (498)
T TIGR03007 356 ELTQLNRDYEVNKSNYEQLLTRRESAEVSKQ 386 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 9999999999999999899888888776543
No 281
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=45.92 E-value=1.8e+02 Score=27.52 Aligned_cols=60 Identities=17% Similarity=0.387 Sum_probs=53.0
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 485 AESVTTCLEVAKREKKCL-KRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 485 ~ES~~sc~e~~kkekk~l-kkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
.+-.+.|.++.--++..| ++....|..-+++-..+..-+.+.+...++|.++++...++.
T Consensus 37 Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~ 97 (131)
T PF10158_consen 37 QEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLS 97 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888988888777776 889999999999999999999999999999999999888875
No 282
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=45.28 E-value=90 Score=36.51 Aligned_cols=39 Identities=36% Similarity=0.408 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhh
Q 008232 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKL 482 (573)
Q Consensus 441 rLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL 482 (573)
.|.||-|||.=...-|= +-|-.|..|+--||-|.||+|-
T Consensus 312 qLLetKNALNiVKNDLI---akVDeL~~E~~vLrgElea~kq 350 (832)
T KOG2077|consen 312 QLLETKNALNIVKNDLI---AKVDELTCEKDVLRGELEAVKQ 350 (832)
T ss_pred HHHhhhhHHHHHHHHHH---HHHHhhccHHHHHhhHHHHHHH
Confidence 47899999987665443 5688899999999999999874
No 283
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=45.13 E-value=4.4e+02 Score=28.66 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 008232 501 CLKRLLAWEKQKAKL 515 (573)
Q Consensus 501 ~lkkl~~WEkQK~~L 515 (573)
.+||++.-.++|.-|
T Consensus 82 LlKkl~~l~keKe~L 96 (310)
T PF09755_consen 82 LLKKLQQLKKEKETL 96 (310)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666665555
No 284
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.11 E-value=90 Score=27.44 Aligned_cols=69 Identities=29% Similarity=0.414 Sum_probs=44.8
Q ss_pred hcHHHHHHHHhhHHHHHHhhhh--cccchhhHHhhHHHHHHHHHhhhh------------hhhhhhHHHHHHhhhhHHHH
Q 008232 409 NDLTELKMLRMEREETQRLKKG--KQTLEDTTMKRLSEMENALRKASG------------QVDRANAAVRRLETENAEIR 474 (573)
Q Consensus 409 kd~~ELk~LR~Ekee~~rlkKe--Kq~lEe~T~KrLsEmEnAl~kas~------------QldrAna~vrrLE~ena~lr 474 (573)
....|+..||.+.+..+....- =..|+.-+.+-|..+|..|..+-. |++.-..-++.|+.+|..|+
T Consensus 16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~ 95 (100)
T PF01486_consen 16 ELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLR 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777766654331 136777799999999988877654 34444555666666666666
Q ss_pred HHH
Q 008232 475 AEM 477 (573)
Q Consensus 475 ~Em 477 (573)
.++
T Consensus 96 ~~~ 98 (100)
T PF01486_consen 96 QKI 98 (100)
T ss_pred HHh
Confidence 655
No 285
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=44.88 E-value=3.1e+02 Score=26.81 Aligned_cols=101 Identities=23% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHH---
Q 008232 403 AARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEA--- 479 (573)
Q Consensus 403 aa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEA--- 479 (573)
++.+-.....|+..||.+++..+.-++.++.+-.-.-++|.++|-.++.-...+. +-|..|+.+|-.|......
T Consensus 41 ~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~---~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 41 LASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQ---SQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhh
Q ss_pred --hhhhhhhhH--HHHHHHHHHHHHHHHHHH
Q 008232 480 --SKLSAAESV--TTCLEVAKREKKCLKRLL 506 (573)
Q Consensus 480 --aKL~A~ES~--~sc~e~~kkekk~lkkl~ 506 (573)
+.|.+.|+. .-.-.+..|+.+-++++.
T Consensus 118 q~~rlee~e~~l~~e~~~l~er~~e~l~~~~ 148 (158)
T PF09744_consen 118 QSSRLEEREAELKKEYNRLHERERELLRKLK 148 (158)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHHHHHHH
No 286
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=44.50 E-value=98 Score=33.66 Aligned_cols=40 Identities=28% Similarity=0.381 Sum_probs=28.6
Q ss_pred HHHHHhhhhcccchhhHH---hhHHHHHHHHHhhhhhhhhhhH
Q 008232 422 EETQRLKKGKQTLEDTTM---KRLSEMENALRKASGQVDRANA 461 (573)
Q Consensus 422 ee~~rlkKeKq~lEe~T~---KrLsEmEnAl~kas~QldrAna 461 (573)
+|.+.|.+|-|.|||.-+ .|+.|+....++.++.+++-.-
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkk 46 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKK 46 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888855 6777777777766666655444
No 287
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=44.43 E-value=4.4e+02 Score=28.49 Aligned_cols=41 Identities=15% Similarity=0.300 Sum_probs=28.1
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 008232 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEA 479 (573)
Q Consensus 439 ~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEA 479 (573)
+-+|.+.|..|........--|-.|+.+..+.+++++++..
T Consensus 260 ~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 260 KTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666777777777777777644
No 288
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=44.08 E-value=40 Score=31.15 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEA 479 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEA 479 (573)
.++..||.-|.....|+..-...+..|..||+.|+.|-+-
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~ 47 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDK 47 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999887543
No 289
>PLN02320 seryl-tRNA synthetase
Probab=44.05 E-value=1.9e+02 Score=33.15 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=12.6
Q ss_pred HhhHHHHHHHHHhhhhhhhh
Q 008232 439 MKRLSEMENALRKASGQVDR 458 (573)
Q Consensus 439 ~KrLsEmEnAl~kas~Qldr 458 (573)
..++.++.+..++...|+|.
T Consensus 92 vd~l~~ld~~~r~~~~~~~~ 111 (502)
T PLN02320 92 LELVLELYENMLALQKEVER 111 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666655544
No 290
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.71 E-value=6.5e+02 Score=30.19 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=9.5
Q ss_pred ccCCcccCCCccc
Q 008232 265 MTLPRDIECPKRF 277 (573)
Q Consensus 265 ~~l~~~~~~~kr~ 277 (573)
+.|-+|--+|.|+
T Consensus 369 I~L~~Dp~~~~ry 381 (717)
T PF10168_consen 369 IRLHRDPLNPDRY 381 (717)
T ss_pred eEEEecCCCCceE
Confidence 5667788888875
No 291
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.28 E-value=3.8e+02 Score=32.23 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=45.0
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHH----HHHHHHhhhhhhhhhhHHHHHHhhhhHHHH
Q 008232 399 KAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSE----MENALRKASGQVDRANAAVRRLETENAEIR 474 (573)
Q Consensus 399 KvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsE----mEnAl~kas~QldrAna~vrrLE~ena~lr 474 (573)
-++..|+|++=+..-+..=+.-..+. +..+| ..+.+|.+ +|.....+......+...-++||.+..+++
T Consensus 484 ~a~~iA~~~Glp~~ii~~A~~~~~~~------~~~~~-~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 556 (771)
T TIGR01069 484 YAFEIAQRYGIPHFIIEQAKTFYGEF------KEEIN-VLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELK 556 (771)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHhh------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888877776544432211 11111 12222222 333333333333444455556666666666
Q ss_pred HHHHHhhhhhhhhHHHHHHHHH
Q 008232 475 AEMEASKLSAAESVTTCLEVAK 496 (573)
Q Consensus 475 ~EmEAaKL~A~ES~~sc~e~~k 496 (573)
.+.+.....|.+-+....+-++
T Consensus 557 ~~~~~~~~~a~~ea~~~~~~a~ 578 (771)
T TIGR01069 557 ERERNKKLELEKEAQEALKALK 578 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555555554444433
No 292
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=43.28 E-value=2e+02 Score=31.79 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=30.1
Q ss_pred HHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhh
Q 008232 414 LKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRAN 460 (573)
Q Consensus 414 Lk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAn 460 (573)
+|.+|...|+..+--+-+-.-.+....+|.++.+..++...|+|...
T Consensus 4 ik~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~ 50 (418)
T TIGR00414 4 RKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQ 50 (418)
T ss_pred HHHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777766554444432112257888888888888887776644
No 293
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=43.19 E-value=1.9e+02 Score=34.03 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=13.1
Q ss_pred HhhhhcccchhhHHhhHHHHHHH
Q 008232 426 RLKKGKQTLEDTTMKRLSEMENA 448 (573)
Q Consensus 426 rlkKeKq~lEe~T~KrLsEmEnA 448 (573)
.+.|+-|.|..-.+.++.|+|..
T Consensus 322 ~l~~eaq~l~~~L~~~~~e~~~~ 344 (632)
T PF14817_consen 322 ALNKEAQALSQRLQRLLEEIERR 344 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666655
No 294
>PRK12704 phosphodiesterase; Provisional
Probab=43.10 E-value=5.7e+02 Score=29.36 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=6.8
Q ss_pred chhhHHhhHHHHHHHH
Q 008232 434 LEDTTMKRLSEMENAL 449 (573)
Q Consensus 434 lEe~T~KrLsEmEnAl 449 (573)
.++...++-.|+|..+
T Consensus 62 aeeE~~~~R~Ele~e~ 77 (520)
T PRK12704 62 AKEEIHKLRNEFEKEL 77 (520)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 295
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=43.10 E-value=2.2e+02 Score=27.94 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhh
Q 008232 507 AWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 507 ~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~ 548 (573)
-.++--..||+|+.+-.--+..+.+.+.+.++--+++=.||-
T Consensus 141 ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 141 EKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445567777777777777777777776666666666663
No 296
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=42.86 E-value=2.2e+02 Score=24.45 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=19.3
Q ss_pred hhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 452 ASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 452 as~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
-...+.+|=-++.-|.+||++|+.+-.+.+
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334555566677777777777777655544
No 297
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=42.79 E-value=6e+02 Score=29.53 Aligned_cols=30 Identities=37% Similarity=0.480 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 505 LLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (573)
Q Consensus 505 l~~WEkQK~~LQEEla~eK~Kl~~l~qel~ 534 (573)
|..-|++|..+.+||...+++|..||.||+
T Consensus 450 L~~aE~ek~~l~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 450 LESAEKEKESLEEELKEANQNISRLQDELE 479 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555554
No 298
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=42.58 E-value=1.5e+02 Score=30.45 Aligned_cols=78 Identities=24% Similarity=0.331 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHH---hhhhhhhhhhHHHHHHhhhhHHHH
Q 008232 398 QKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALR---KASGQVDRANAAVRRLETENAEIR 474 (573)
Q Consensus 398 qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~---kas~QldrAna~vrrLE~ena~lr 474 (573)
+++|..+..+.+-.+--.. =.||...++.+.+.||+.-.++-+++|.|-. .-..|.|.=+--.-||-.|++.|+
T Consensus 130 ~~~~~~~~~lk~~~~~~~~---~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSK---LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHHHHHHHHHHHhhhcccc---hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5555554444333222222 1233444444555555554444444333322 233455555555566666666666
Q ss_pred HHHH
Q 008232 475 AEME 478 (573)
Q Consensus 475 ~EmE 478 (573)
.+.|
T Consensus 207 ~~i~ 210 (216)
T KOG1962|consen 207 EQIE 210 (216)
T ss_pred HHHh
Confidence 5544
No 299
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=42.54 E-value=2.2e+02 Score=33.01 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=9.4
Q ss_pred cccCCchhHHHHhHhHH
Q 008232 276 RFNLSPSMKSLLKRNVA 292 (573)
Q Consensus 276 r~~~s~s~~s~Lkr~~~ 292 (573)
|+..+-+..++|++.+.
T Consensus 81 ~i~~~v~l~pLL~~~vv 97 (555)
T TIGR03545 81 RINASLDWDALLRGKVV 97 (555)
T ss_pred EEEEEeccHHHhcCCcE
Confidence 44445555666665554
No 300
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.51 E-value=1.8e+02 Score=33.22 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=17.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 008232 369 DQKDEIVVTMLHQIKDLERQVKE 391 (573)
Q Consensus 369 D~KdEmil~Lv~rv~eLq~qlke 391 (573)
|.-.+-|.+||-|+++|+.+++.
T Consensus 55 DTP~DTlrTlva~~k~~r~~~~~ 77 (472)
T TIGR03752 55 DTPADTLRTLVAEVKELRKRLAK 77 (472)
T ss_pred CCccchHHHHHHHHHHHHHHHHH
Confidence 34455799999999999887753
No 301
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=41.40 E-value=69 Score=36.80 Aligned_cols=52 Identities=21% Similarity=0.146 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHhHhHhhhhhhhhcc
Q 008232 500 KCLKRLLAWEKQKAKLQEEIANE-----K-EKIKELQQCLARIQQDQKETEVRLICLF 551 (573)
Q Consensus 500 k~lkkl~~WEkQK~~LQEEla~e-----K-~Kl~~l~qel~qak~~q~q~E~~~~~~~ 551 (573)
+.-+++..+|.++..|++++++- . .++.+++++++++++...+.+.+|--|-
T Consensus 572 ~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 572 QLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788888998898888753 1 2899999999999999999999998764
No 302
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=41.29 E-value=3.4e+02 Score=26.63 Aligned_cols=39 Identities=8% Similarity=0.190 Sum_probs=33.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 369 DQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKL 407 (573)
Q Consensus 369 D~KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL 407 (573)
.....+.-.|+.-.+.-+.+.++|.|=.+-+++..+..+
T Consensus 44 ~~~~~l~~~l~~~q~~ak~ha~~w~d~~~P~ii~~~~~I 82 (184)
T PF05791_consen 44 SKLSDLQKDLVQHQKTAKEHAKEWLDTIKPQIIDLNQDI 82 (184)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 566778889999999999999999999888888877766
No 303
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=40.92 E-value=1.9e+02 Score=30.04 Aligned_cols=93 Identities=22% Similarity=0.363 Sum_probs=55.2
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh-------------hhhhhhHHHHHHHHHHHHHHHHH
Q 008232 438 TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK-------------LSAAESVTTCLEVAKREKKCLKR 504 (573)
Q Consensus 438 T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK-------------L~A~ES~~sc~e~~kkekk~lkk 504 (573)
.++|-.+|+.+|.- .+--.-..++.+=|.+++|+=|.... .-..=+...|+ .
T Consensus 147 ~~~rR~~i~e~I~~----~~~d~~de~~~~wE~aQ~rkg~~~~~~~~~~~~~~~ip~~tpLP~L~~~~---~-------- 211 (254)
T PF15458_consen 147 KRRRREEIEEAIND----DDDDSEDEERAEWEAAQLRKGMDGLSDEKDRYKPPPIPKITPLPSLSECL---E-------- 211 (254)
T ss_pred HHHHHHHHHHHHHh----cccccchhhHHHHHHHHHHhhccCCccchhccCCCCCcccCCCCchhHHH---H--------
Confidence 44567788888877 11112344566677788888887776 11122334444 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhh
Q 008232 505 LLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 505 l~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~ 547 (573)
......+.|+...+....+|..|++|++.+..+++++...+
T Consensus 212 --rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l 252 (254)
T PF15458_consen 212 --RLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELL 252 (254)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222245555555666777778888888888877776654
No 304
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=40.79 E-value=5.4e+02 Score=28.41 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTT 490 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~s 490 (573)
.+...+...+.--+.++--.+..+..++.+..++++.+.+-=.+-..+..+
T Consensus 292 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~ 342 (458)
T COG3206 292 QQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPN 342 (458)
T ss_pred HHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 334444555555666666666677777777777777765543333333333
No 305
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=40.50 E-value=4.8e+02 Score=27.74 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=15.5
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhh
Q 008232 459 ANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 459 Ana~vrrLE~ena~lr~EmEAaK 481 (573)
....+..|+.+.++++.|+.+..
T Consensus 212 ~~~~i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 212 QLSLISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457778888888877765543
No 306
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=40.24 E-value=7.1e+02 Score=29.68 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=14.4
Q ss_pred HHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 008232 465 RLETENAEIRAEMEASKLSAAESVTTCLEVAKR 497 (573)
Q Consensus 465 rLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kk 497 (573)
.|..+...++++...++-..++....|++..+.
T Consensus 245 ~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~ 277 (670)
T KOG0239|consen 245 ALQQELEELKAELKELNDQVSLLTREVQEALKE 277 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 307
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=39.78 E-value=9.5e+02 Score=31.00 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=18.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 369 DQKDEIVVTMLHQIKDLERQVKERKEW 395 (573)
Q Consensus 369 D~KdEmil~Lv~rv~eLq~qlkewtdW 395 (573)
+-..+.+..|+.-+..++.-+++...-
T Consensus 774 ~~~~~~~~~l~~~~~~~e~~~~d~~~~ 800 (1294)
T KOG0962|consen 774 DAAEESAETLQTDVTVLERFLKDLKLR 800 (1294)
T ss_pred chhHHhHHHHhhhhHHHHHHHHHHHHH
Confidence 445566777777777777777776654
No 308
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=39.53 E-value=1.5e+02 Score=29.00 Aligned_cols=77 Identities=30% Similarity=0.380 Sum_probs=43.6
Q ss_pred hhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 008232 436 DTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQK--A 513 (573)
Q Consensus 436 e~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK--~ 513 (573)
-.++.||..-=+++.+|++.|=++--.....+.+ ..+++-++|+..+.-+ +-+|.|- .
T Consensus 69 S~~~~~L~~As~~V~~At~~LV~av~~~~~~~~~----~~~~d~s~ls~~~~k~----------------~eMe~Qv~iL 128 (152)
T PF01608_consen 69 SKTQDRLEQASKAVKKATENLVAAVKAAIEQEEE----QEEVDFSKLSLHQAKR----------------QEMEAQVRIL 128 (152)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH----HHH----------HHH----------------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hcccchhhhcHHHHHH----------------HHHHHHHHHH
Confidence 3488888888888888888776654444444333 4556666665555422 3344442 3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008232 514 KLQEEIANEKEKIKELQQC 532 (573)
Q Consensus 514 ~LQEEla~eK~Kl~~l~qe 532 (573)
+|+-||..++.||.+|.+.
T Consensus 129 ~lE~eLe~ar~kL~~lRk~ 147 (152)
T PF01608_consen 129 KLEKELEKARKKLAELRKA 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667888888888888764
No 309
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=39.38 E-value=1.2e+02 Score=27.58 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhh
Q 008232 508 WEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 508 WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~ 547 (573)
++.+...|++.++.-.+++.+|++-++.++...+..++|+
T Consensus 78 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~~ 117 (118)
T cd04776 78 LEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRERL 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555677777777777777788777777777777777664
No 310
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=39.10 E-value=1e+02 Score=31.24 Aligned_cols=64 Identities=25% Similarity=0.389 Sum_probs=44.0
Q ss_pred HHHHhhhhcccchhhHHhhHHHHHHHHHhhhhh---hh----------------hhhHHHHHHhhhhHHHHHHHHHhhhh
Q 008232 423 ETQRLKKGKQTLEDTTMKRLSEMENALRKASGQ---VD----------------RANAAVRRLETENAEIRAEMEASKLS 483 (573)
Q Consensus 423 e~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~Q---ld----------------rAna~vrrLE~ena~lr~EmEAaKL~ 483 (573)
|-+++++.|+.||+.=++|.+.+.....-|-.| +. |=..+|.-||.|++..|.++++....
T Consensus 24 Eh~~f~~Ak~rLe~~hr~r~~~VmkeW~eaE~~~~~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~H~q 103 (193)
T PF12925_consen 24 EHQRFKEAKERLEEKHRERMTKVMKEWSEAEERYKELPKADPKKAEQFKKEMTQRFQKTVQALEQEAAAERQQLVETHQQ 103 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888666666665554444333 22 33478899999999999999887655
Q ss_pred hhh
Q 008232 484 AAE 486 (573)
Q Consensus 484 A~E 486 (573)
=++
T Consensus 104 RV~ 106 (193)
T PF12925_consen 104 RVQ 106 (193)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 311
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=38.73 E-value=1.4e+02 Score=31.28 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=39.8
Q ss_pred HHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHh
Q 008232 463 VRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKE 542 (573)
Q Consensus 463 vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q 542 (573)
..|++-.|...|+..+++|....| . ......|..|-.+.+.+|.+|+++|.+.+....+
T Consensus 196 ~err~rNN~A~~kSR~~~k~~~~e--------------------~-~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 196 KERRRRNNEAVRKSRDKRKQKEDE--------------------M-AHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHhhhHHHHHhhhhHHHHHHH--------------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566677777777777765522 2 2234566667777788888888888887776655
Q ss_pred h
Q 008232 543 T 543 (573)
Q Consensus 543 ~ 543 (573)
.
T Consensus 255 ~ 255 (269)
T KOG3119|consen 255 L 255 (269)
T ss_pred h
Confidence 4
No 312
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=38.71 E-value=1.9e+02 Score=27.37 Aligned_cols=47 Identities=26% Similarity=0.199 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
.+..-.+|..+||+||..+..-+....+.|.+.++-.+..+..|+-.
T Consensus 35 qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 35 QLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888887777777777766666666556666543
No 313
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=38.61 E-value=3.3e+02 Score=25.41 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEl 519 (573)
.=+-+|=...++-..+-+..+...++++.++..+....+..|-.-.++...+..+-.++...-+++.+-+..-..+.||+
T Consensus 38 n~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~ 117 (151)
T PF11559_consen 38 NCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEEL 117 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556777778888888899999998888888888877777777666666666666556655555555555555
Q ss_pred HHHHHHHHHHH
Q 008232 520 ANEKEKIKELQ 530 (573)
Q Consensus 520 a~eK~Kl~~l~ 530 (573)
..-+..+.++.
T Consensus 118 ~klk~~~~~~~ 128 (151)
T PF11559_consen 118 QKLKNQLQQRK 128 (151)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 314
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=38.39 E-value=1.4e+02 Score=37.27 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~ 539 (573)
.++.||.....+.++.++.+.+|.+++++.++.++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (1123)
T PRK11448 178 ELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQE 213 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 466676666666667777777777666666555444
No 315
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=37.84 E-value=3e+02 Score=29.25 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhhhhhhhhhHHH
Q 008232 442 LSEMENALRKASGQVDRANAAV 463 (573)
Q Consensus 442 LsEmEnAl~kas~QldrAna~v 463 (573)
|.+++..+..+..+++.|....
T Consensus 108 l~~~~~~l~~a~~~l~~a~~~~ 129 (370)
T PRK11578 108 LMELRAQRQQAEAELKLARVTL 129 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444433
No 316
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=37.72 E-value=78 Score=30.32 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=64.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHhHhhhh--hhhhccccccccc
Q 008232 482 LSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANE-KEKIKELQQCLARIQQDQKETEV--RLICLFPWFSTHK 558 (573)
Q Consensus 482 L~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~e-K~Kl~~l~qel~qak~~q~q~E~--~~~~~~~~~~~~~ 558 (573)
+.++..+.+|...+++=..+++.+.--=+|-..+++|+..- ++-+..|.+.|++++++-+..=. +|+|+--|--+-|
T Consensus 23 ~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~n~~kk~~y~~K 102 (147)
T PF05659_consen 23 IDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRRWNLYKKPRYARK 102 (147)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHhHHHH
Confidence 45677888999999999999999999999999999999999 88899999999999998766543 5666554444444
Q ss_pred c
Q 008232 559 I 559 (573)
Q Consensus 559 ~ 559 (573)
|
T Consensus 103 i 103 (147)
T PF05659_consen 103 I 103 (147)
T ss_pred H
Confidence 3
No 317
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=37.64 E-value=1.8e+02 Score=31.98 Aligned_cols=80 Identities=13% Similarity=0.228 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhc---HHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHH
Q 008232 374 IVVTMLHQIKDLERQVKERKEWAHQKAMQA----ARKLSND---LTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEME 446 (573)
Q Consensus 374 mil~Lv~rv~eLq~qlkewtdWA~qKvmQa----a~rL~kd---~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmE 446 (573)
.+-.+..++.+|++.+..-.=|.+++-.|. -..|..- ..+++.+..+.+++..+=++ +|..| +.+++
T Consensus 8 ~~~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~----~D~e~--~~~a~ 81 (360)
T TIGR00019 8 KLESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEE----SDPEM--REMAK 81 (360)
T ss_pred HHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCHHH--HHHHH
Confidence 344567788899999988777866643332 2222222 23344444444444444322 34434 24455
Q ss_pred HHHHhhhhhhhhh
Q 008232 447 NALRKASGQVDRA 459 (573)
Q Consensus 447 nAl~kas~QldrA 459 (573)
.++.....+|+..
T Consensus 82 ~e~~~l~~~~~~~ 94 (360)
T TIGR00019 82 EELEELEEKIEEL 94 (360)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444443
No 318
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=37.61 E-value=4.4e+02 Score=26.50 Aligned_cols=120 Identities=20% Similarity=0.249 Sum_probs=78.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhcH-HHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHH
Q 008232 370 QKDEIVVTMLHQIKDLERQVKERKEWA--HQKAMQAARKLSNDL-TELKMLRMEREETQRLKKGKQTLEDTTMKRLSEME 446 (573)
Q Consensus 370 ~KdEmil~Lv~rv~eLq~qlkewtdWA--~qKvmQaa~rL~kd~-~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmE 446 (573)
-|..|+-.|-.+|+|.+.-|++-+-=- -|..+++|.+-.++- .++++|+-=.+.++ .--++.........
T Consensus 64 GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~-------~nl~~a~~~a~~AQ 136 (188)
T PF05335_consen 64 GKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQ-------ANLANAEQVAEGAQ 136 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 478888889999999988888765433 255666666644432 22333322222111 11223444555566
Q ss_pred HHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 008232 447 NALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAK 496 (573)
Q Consensus 447 nAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~k 496 (573)
..|.-.+.=|+.|...|..|.-...+-|.+.|..|-.|.-.+..=+|+..
T Consensus 137 ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA~~AA~eAkq 186 (188)
T PF05335_consen 137 QELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKAACAAQEAKQ 186 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666788888889999998999999999888888777766666543
No 319
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=37.61 E-value=2.1e+02 Score=23.70 Aligned_cols=26 Identities=12% Similarity=0.394 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 510 KQKAKLQEEIANEKEKIKELQQCLAR 535 (573)
Q Consensus 510 kQK~~LQEEla~eK~Kl~~l~qel~q 535 (573)
.+|..++..|...|..+..|.++|.+
T Consensus 54 s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 54 SERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56677788888888888888887754
No 320
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=37.51 E-value=4.4e+02 Score=26.49 Aligned_cols=70 Identities=23% Similarity=0.347 Sum_probs=44.2
Q ss_pred HHHHHHHHH----hhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHH
Q 008232 398 QKAMQAARK----LSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEI 473 (573)
Q Consensus 398 qKvmQaa~r----L~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~l 473 (573)
+|++|+++- |.--+.-|..|.+|..|++.. +.|....|..+...+..|..+++.-+.+...|
T Consensus 49 ~kA~qaA~aAeAaL~GKq~iveqLe~ev~EAe~v--------------V~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L 114 (188)
T PF05335_consen 49 DKAAQAAKAAEAALAGKQQIVEQLEQEVREAEAV--------------VQEEKASLQQAQANAQAAQRAAQQAQQQLETL 114 (188)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777764 555667788888888888775 44445555555555555556665555555555
Q ss_pred HHHHHHhh
Q 008232 474 RAEMEASK 481 (573)
Q Consensus 474 r~EmEAaK 481 (573)
+.=++.++
T Consensus 115 ~~~l~~a~ 122 (188)
T PF05335_consen 115 KAALKAAQ 122 (188)
T ss_pred HHHHHHHH
Confidence 55555544
No 321
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=37.13 E-value=69 Score=30.94 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHHHhHhHhhhhhhhhcccccccccc
Q 008232 513 AKLQEEIANEKEKIKELQQC---------------LARIQQDQKETEVRLICLFPWFSTHKI 559 (573)
Q Consensus 513 ~~LQEEla~eK~Kl~~l~qe---------------l~qak~~q~q~E~~~~~~~~~~~~~~~ 559 (573)
.+||+||..-+.+..++-++ -..+++.|.++|+|++-|---+.+-+|
T Consensus 14 ~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A~i 75 (158)
T PRK05892 14 DHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTGPT 75 (158)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhCEE
Confidence 46777777666655555444 356677788888888877655555444
No 322
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=36.91 E-value=5.4e+02 Score=29.16 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhh-------hHH
Q 008232 390 KERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRA-------NAA 462 (573)
Q Consensus 390 kewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrA-------na~ 462 (573)
++-..+|.+-|-+|-.||.+-+..|-.+|.+.-..+=.+ ==+..+.-+..+|..|-.+..||+.. +-.
T Consensus 241 ~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~-----~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPq 315 (434)
T PRK15178 241 KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKE-----TITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPL 315 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 345678999999998998888888888887653111110 01236677888888888877777733 456
Q ss_pred HHHHhhhhHHHHHHHHH--hhhh
Q 008232 463 VRRLETENAEIRAEMEA--SKLS 483 (573)
Q Consensus 463 vrrLE~ena~lr~EmEA--aKL~ 483 (573)
|..|+.+++.|+++++. +|+.
T Consensus 316 V~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 316 IPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888888864 5554
No 323
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.88 E-value=2.3e+02 Score=30.12 Aligned_cols=38 Identities=13% Similarity=0.276 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 501 CLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 501 ~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
.-+.+++.-.|-..+|..+..-+.++.++++++.+.++
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~ 87 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQK 87 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333333333333333333333
No 324
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=36.88 E-value=8.3e+02 Score=29.51 Aligned_cols=43 Identities=30% Similarity=0.433 Sum_probs=30.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcHHHHHHH
Q 008232 370 QKDEIVVTMLHQIKDLERQVKERKEW-AHQKAMQAARKLSNDLTELKML 417 (573)
Q Consensus 370 ~KdEmil~Lv~rv~eLq~qlkewtdW-A~qKvmQaa~rL~kd~~ELk~L 417 (573)
+--|||--=++-++-|+.+++.-.+| .+||..=.| .-.||..|
T Consensus 63 qqaelis~qlqE~rrle~e~~~lre~sl~qkmrLe~-----qa~Ele~l 106 (739)
T PF07111_consen 63 QQAELISRQLQELRRLEEEVRALRETSLQQKMRLEA-----QAEELEAL 106 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHH
Confidence 34678888888889999999999999 566654333 33355555
No 325
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=36.76 E-value=2.5e+02 Score=27.92 Aligned_cols=20 Identities=40% Similarity=0.562 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008232 515 LQEEIANEKEKIKELQQCLA 534 (573)
Q Consensus 515 LQEEla~eK~Kl~~l~qel~ 534 (573)
+-++|...+..+.+|+.+|+
T Consensus 108 ~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 326
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=36.56 E-value=4.1e+02 Score=28.90 Aligned_cols=70 Identities=21% Similarity=0.315 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhh
Q 008232 380 HQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRA 459 (573)
Q Consensus 380 ~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrA 459 (573)
.+|.+|=.-|+.|.-++.. |=.=+.-|++|+.=|+++..+ ..+|+++|.....-..++++-
T Consensus 295 ~KI~eLy~~l~~~~~~~~~--------lP~lv~RL~tL~~lH~~a~~~-----------~~~l~~le~~q~~l~~~l~~~ 355 (388)
T PF04912_consen 295 SKIDELYEILPRWDPYAPS--------LPSLVERLKTLKSLHEEAAEF-----------SQTLSELESQQSDLQSQLKKW 355 (388)
T ss_pred hHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 5667777778888888776 333445599999999988766 478888888888888888888
Q ss_pred hHHHHHHhh
Q 008232 460 NAAVRRLET 468 (573)
Q Consensus 460 na~vrrLE~ 468 (573)
+.++..++.
T Consensus 356 ~~~L~~ve~ 364 (388)
T PF04912_consen 356 EELLNKVEE 364 (388)
T ss_pred HHHHHHHHH
Confidence 888777776
No 327
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=36.30 E-value=54 Score=31.84 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHhHhHhhhhhhhhcccccccccc
Q 008232 513 AKLQEEIANEKEKIKELQQ--CLARIQQDQKETEVRLICLFPWFSTHKI 559 (573)
Q Consensus 513 ~~LQEEla~eK~Kl~~l~q--el~qak~~q~q~E~~~~~~~~~~~~~~~ 559 (573)
.+||+||...+.+|..... .|-.+|+.|..+|.|++-|---+.+-+|
T Consensus 37 ~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~~A~I 85 (160)
T PRK06342 37 KALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARRRTAQL 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHccCEE
Confidence 4677777777666655532 1333777777788777776554444444
No 328
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=36.28 E-value=73 Score=28.12 Aligned_cols=32 Identities=41% Similarity=0.583 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 513 AKLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 513 ~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
.++..||...|.||+++|..|.....+..+.|
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999988888888877777
No 329
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=36.14 E-value=9.2e+02 Score=29.79 Aligned_cols=61 Identities=34% Similarity=0.374 Sum_probs=32.1
Q ss_pred HHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 463 VRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARI 536 (573)
Q Consensus 463 vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qa 536 (573)
-||=|.|+...++|||+ |..+.|--.. +.+..=++++ .-+||-|+.|.++=++-|++++|-
T Consensus 946 ~rre~ee~k~~k~e~e~-kRK~eEeqr~------~qee~e~~l~------~e~q~qla~e~eee~k~q~~~Eqe 1006 (1259)
T KOG0163|consen 946 RRREEEEKKRAKAEMET-KRKAEEEQRK------AQEEEERRLA------LELQEQLAKEAEEEAKRQNQLEQE 1006 (1259)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHH------hhhhHHHHHH------HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 35556677778888875 3333332221 1111111111 235667777777777666666663
No 330
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.03 E-value=8.5e+02 Score=29.36 Aligned_cols=20 Identities=15% Similarity=-0.134 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 008232 162 QLEEYSLAGMVCLLQQVRPH 181 (573)
Q Consensus 162 rle~RSL~GLVafL~~~fP~ 181 (573)
+...+.|..|...+..+.+.
T Consensus 240 ~e~~~il~~L~~~i~~~~~~ 259 (771)
T TIGR01069 240 CEIEKILRTLSEKVQEYLLE 259 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556677777776665543
No 331
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=35.95 E-value=3.3e+02 Score=24.52 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=21.3
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 008232 444 EMENALRKASGQVDRANAAVRRLETENAEIRAEMEA 479 (573)
Q Consensus 444 EmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEA 479 (573)
+...+|..+..+++........|.....+...++..
T Consensus 17 ~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 52 (141)
T TIGR02473 17 QAKLELAKAQAEFERLETQLQQLIKYREEYEQQALE 52 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666666665544
No 332
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=35.78 E-value=8.3e+02 Score=29.14 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=42.7
Q ss_pred HHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 448 ALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIK 527 (573)
Q Consensus 448 Al~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~ 527 (573)
.+..++.+++.-..+.++- +..|+.+|+.-|..-.+....|.+.-+.-+.+++.... ++.+|+.....+.
T Consensus 224 ~~~~~~~~l~~~~~~~~~~---i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 224 DLRRNIKPLEGLESTIKKK---IQALQQELEELKAELKELNDQVSLLTREVQEALKESNT-------LQSDLESLEENLV 293 (670)
T ss_pred hHHHhhhhhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4445555555555554444 66777777766655555555555555544444443322 2555555555555
Q ss_pred HHHHHHHHHHhHhH
Q 008232 528 ELQQCLARIQQDQK 541 (573)
Q Consensus 528 ~l~qel~qak~~q~ 541 (573)
+.+.|.++-+++-+
T Consensus 294 ~~~~e~~~r~kL~N 307 (670)
T KOG0239|consen 294 EKKKEKEERRKLHN 307 (670)
T ss_pred HHHHHHHHHHHHHH
Confidence 44433333333333
No 333
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=35.74 E-value=3.9e+02 Score=25.40 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=35.9
Q ss_pred HhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 466 LETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARI 536 (573)
Q Consensus 466 LE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qa 536 (573)
|.-.+..|-.|+|.+--.-.++..-..++.. +....|++-.-|..+..+--.|+.++...+..+
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~-------~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADV-------KAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4555556666777666555555555555555 444555555555555555555555555555444
No 334
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=35.62 E-value=95 Score=35.34 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=25.4
Q ss_pred HHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhh
Q 008232 411 LTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDR 458 (573)
Q Consensus 411 ~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~Qldr 458 (573)
..+|..||+|.++..+. .+.+-.||.++|..+.....|++.
T Consensus 82 EKqLaaLrqElq~~saq-------~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQ-------RGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHhhh-------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555433332 223456888999988888888853
No 335
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=35.61 E-value=1e+02 Score=26.93 Aligned_cols=52 Identities=31% Similarity=0.423 Sum_probs=38.0
Q ss_pred HHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhh-----------hhhhhhhhHHHHHHhhh
Q 008232 411 LTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKA-----------SGQVDRANAAVRRLETE 469 (573)
Q Consensus 411 ~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~ka-----------s~QldrAna~vrrLE~e 469 (573)
+..|..||.|.+ ....+.+.|+..|.++..-|+++ .+-+|+.|.+|.++|++
T Consensus 3 ~~~L~~L~~eL~-------~~~~ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~av~~FE~~ 65 (85)
T PF14357_consen 3 QELLEKLHQELE-------QNPPLDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEAVERFEAS 65 (85)
T ss_pred HHHHHHHHHHHh-------cCCCCCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHh
Confidence 456888888888 34456888999998877666662 23468888888888875
No 336
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=35.57 E-value=3.3e+02 Score=30.26 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 525 KIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 525 Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
++.+|.+++.+.++..+++|.++.-+
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 74 EVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 337
>COG5283 Phage-related tail protein [Function unknown]
Probab=35.39 E-value=1.1e+03 Score=30.31 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhhhhhhhhh-------hHHHHHHhhhhHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRA-------NAAVRRLETENAEIRAEM 477 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrA-------na~vrrLE~ena~lr~Em 477 (573)
+++...|+.++++|+|+++| ...++++..+.+.+-+=|
T Consensus 99 ~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~m 143 (1213)
T COG5283 99 AQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSM 143 (1213)
T ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 46778899999999999988 567888888888777644
No 338
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=35.13 E-value=2.7e+02 Score=23.60 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=25.8
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhh
Q 008232 445 MENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAE 486 (573)
Q Consensus 445 mEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~E 486 (573)
||.++.--...||++..-+...+.+|..|+.|.+.+=-+..+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~ 44 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD 44 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666666666666777777777777665444443
No 339
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=35.12 E-value=61 Score=24.47 Aligned_cols=34 Identities=9% Similarity=0.051 Sum_probs=25.0
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHhcCcHHHhhhhC
Q 008232 171 MVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSIE 205 (573)
Q Consensus 171 LVafL~~~fP~LS~~dAm~yLLlADadLl~A~a~~ 205 (573)
+|.-++.+.- .+...|+.||-.++-||..|+..-
T Consensus 3 ~i~~F~~iTg-~~~~~A~~~L~~~~wdle~Av~~y 36 (43)
T PF14555_consen 3 KIAQFMSITG-ADEDVAIQYLEANNWDLEAAVNAY 36 (43)
T ss_dssp HHHHHHHHH--SSHHHHHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHHHC-cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444555553 489999999999999999998754
No 340
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=35.05 E-value=4.4e+02 Score=25.80 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=37.2
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 457 DRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQ 511 (573)
Q Consensus 457 drAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQ 511 (573)
+++.-.+.||-...+.|..|+-..+++..++..+-+.-+-+=-..|.+-+-||+-
T Consensus 66 ~~~~~laEkL~~Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L~~hqe~erR 120 (173)
T PF07445_consen 66 QQVAFLAEKLVAQIEALQRELATQSLRKKESKPSSRKPIHQLYQRLAQHQEYERR 120 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccCCccccccCchhHHHHHHHHHHHHHHH
Confidence 5667788999999999999999999998888771111111113445555555543
No 341
>KOG3467 consensus Histone H4 [Chromatin structure and dynamics]
Probab=34.75 E-value=35 Score=30.66 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=44.4
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHhHhcccccccCchh-hhHHHHhHHHhhccC
Q 008232 68 WGYCTEEQLEEILLKNLEFLYNEAISKLVALGYDEDVALKAILKNGHCYGGMDV-LTNILHNSLAYLNSS 136 (573)
Q Consensus 68 w~~~~~~~Lr~~LL~~IhgfY~~ALaRLP~~g~~~~~A~raLL~AG~CYGplDP-VSNII~NTI~yl~a~ 136 (573)
.+.-.+.-.|..|-|+|.+.-+-|+.||...+=-. .-.|.||--..- .--.|.|+||+.-..
T Consensus 11 ~~KG~AKrHRK~LsDnIqgitKpaIRRlARr~GVk-------Ri~G~~yeE~~~~~k~fl~n~i~~A~~y 73 (103)
T KOG3467|consen 11 LGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVK-------RISGLIYEETRGVLKVFLENVIRDAVTY 73 (103)
T ss_pred cccchHHHHHHHHHhhccccchHHHHHHHHhcCcc-------hhchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788999999999999999997432211 136999977644 445688999987543
No 342
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=34.55 E-value=3.6e+02 Score=33.63 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhh
Q 008232 164 EEYSLAGMVCLLQQV 178 (573)
Q Consensus 164 e~RSL~GLVafL~~~ 178 (573)
=-+||.-++-.|.+-
T Consensus 225 DVWSLG~ILYELLTG 239 (1021)
T PTZ00266 225 DMWALGCIIYELCSG 239 (1021)
T ss_pred HHHHHHHHHHHHHHC
Confidence 346665555445443
No 343
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=34.54 E-value=13 Score=43.30 Aligned_cols=70 Identities=21% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhH---HhhHHHHHHHHHhhhh---hhhhhhHHHHHHhhhhHH
Q 008232 403 AARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTT---MKRLSEMENALRKASG---QVDRANAAVRRLETENAE 472 (573)
Q Consensus 403 aa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T---~KrLsEmEnAl~kas~---QldrAna~vrrLE~ena~ 472 (573)
.|.|+.+--.++...|+-.++.+-||+.-+.|||.+ |.+...+|..++++.+ |++.-..-+..|+.+..+
T Consensus 306 ~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 306 KADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSE 381 (713)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666677777787888888888888888875 4788888888887543 554444444444444333
No 344
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.52 E-value=2e+02 Score=33.26 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARI 536 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qa 536 (573)
.++.-..+-..|+.|+.+.|.+|..+.++|.+.
T Consensus 213 ~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~ 245 (555)
T TIGR03545 213 ELQKIKEEFDKLKKEGKADKQKIKSAKNDLQND 245 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444456666666666666666655555543
No 345
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=34.50 E-value=6.3e+02 Score=27.39 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhh
Q 008232 515 LQEEIANEKEKIKELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 515 LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~ 548 (573)
.|++++..+..+.+-.+.++.--...+.++.-|.
T Consensus 117 y~~~~~~l~~~l~~~l~~~~~~y~~~d~~q~dw~ 150 (332)
T TIGR01541 117 YKEQLAAIKAALNEALAELHAYYAAEDALQGDWL 150 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4444444444444444444444444445555554
No 346
>smart00338 BRLZ basic region leucin zipper.
Probab=34.35 E-value=2.5e+02 Score=22.70 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008232 485 AESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (573)
Q Consensus 485 ~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~ 539 (573)
-+||..|.+-.+. .++..|.+...|..|...-+.++..|.+++...++.
T Consensus 14 R~aA~~~R~rKk~------~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 14 REAARRSRERKKA------EIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666643222 455668888888888888888888888888877664
No 347
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.27 E-value=4.1e+02 Score=31.46 Aligned_cols=35 Identities=17% Similarity=0.378 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIR 474 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr 474 (573)
+.+..|++.+.+....|......|-.|+.+.++++
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666677777777777776
No 348
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=34.25 E-value=2.7e+02 Score=28.35 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQ 530 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~ 530 (573)
.+..-|.|-.-|+.=|+.-++-|.+|+
T Consensus 168 Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 168 DLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667777777777766666555554
No 349
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=34.23 E-value=1.7e+02 Score=25.90 Aligned_cols=41 Identities=29% Similarity=0.292 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhHhHhhhhhhhhcc
Q 008232 511 QKAKLQEEIANEKEKIKE--------------LQQCLARIQQDQKETEVRLICLF 551 (573)
Q Consensus 511 QK~~LQEEla~eK~Kl~~--------------l~qel~qak~~q~q~E~~~~~~~ 551 (573)
...+||=||...|+|=.. |.++-.|.++.+...+.|++.|.
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777766666444 55567777777887788877764
No 350
>KOG1821 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.05 E-value=63 Score=36.20 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=68.2
Q ss_pred hhcccchhhHHhhHHHHHHHHHhhhhhhhhh------hHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 008232 429 KGKQTLEDTTMKRLSEMENALRKASGQVDRA------NAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCL 502 (573)
Q Consensus 429 KeKq~lEe~T~KrLsEmEnAl~kas~QldrA------na~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~l 502 (573)
.+||.+|+...|++.|--.|-.++-.---+. |.-+|.||+|--.|...|.-|--+..|-.+.-+|.
T Consensus 554 nekk~~eekkgKkh~e~sa~qan~~aaagngectetlnghaR~leaegkkltmdmkfaa~qdrehd~kaqee-------- 625 (662)
T KOG1821|consen 554 NEKKLMEEKKGKKHEEASAAQANAFAAAGNGECTETLNGHARELEAEGKKLTMDMKFAADQDREHDLKAQEE-------- 625 (662)
T ss_pred hHHHHHHHhcccchhhhhHHHHHHHHhccCCcchhhhcchhhhhhhccccccccchhhhhhhhhhhcchhhh--------
Confidence 4788889999999988766655544333333 77899999999999999987777766666554442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 503 KRLLAWEKQKAKLQEEIANEKEKIKELQ 530 (573)
Q Consensus 503 kkl~~WEkQK~~LQEEla~eK~Kl~~l~ 530 (573)
.++..+|+.-.-|--+|++-+.|-..+.
T Consensus 626 rdikemekdlEsL~SaiSa~qdkeedfe 653 (662)
T KOG1821|consen 626 RDIKEMEKDLESLMSAISAMQDKEEDFE 653 (662)
T ss_pred hhHHHhhHHHHHHHHHHHhhhhhHHHHh
Confidence 3567788888888888888777755443
No 351
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=33.78 E-value=1e+02 Score=31.80 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=21.1
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhh
Q 008232 464 RRLETENAEIRAEMEASKLSAAES 487 (573)
Q Consensus 464 rrLE~ena~lr~EmEAaKL~A~ES 487 (573)
-+++.|.+-+|.+||+.|++--+-
T Consensus 177 ~kId~Ev~~lk~qi~s~K~qt~qw 200 (220)
T KOG3156|consen 177 TKIDQEVTNLKTQIESVKTQTIQW 200 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999987653
No 352
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=33.69 E-value=1.1e+03 Score=29.84 Aligned_cols=94 Identities=27% Similarity=0.368 Sum_probs=41.9
Q ss_pred ccCCCCCCCCch--hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchh
Q 008232 360 DENLETITDDQK--DEIVV-TMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLED 436 (573)
Q Consensus 360 D~~l~~vp~D~K--dEmil-~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe 436 (573)
+++=+|+|+|+= +|--+ ..-.++++|+.+++ +.++..++++|+-+ -+-+..+.|+++|+.+++
T Consensus 425 eKnGvyisee~y~~~e~e~~~~~~~ieele~el~------------~~~~~l~~~~e~~~--~~~~~~~~l~~~~~~~k~ 490 (1041)
T KOG0243|consen 425 EKNGVYISEERYTQEEKEKKEMAEQIEELEEELE------------NLEKQLKDLTELYM--NQLEIKELLKEEKEKLKS 490 (1041)
T ss_pred hhCceEechHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 344489999876 32111 23334444444432 22223333333221 023334445555555555
Q ss_pred h---HHhhHHHHHHHHHhhhhhhhhhhHHHHHHh
Q 008232 437 T---TMKRLSEMENALRKASGQVDRANAAVRRLE 467 (573)
Q Consensus 437 ~---T~KrLsEmEnAl~kas~QldrAna~vrrLE 467 (573)
. +-+-|.-|+..+.++..+|...+-.+.+++
T Consensus 491 ~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~ 524 (1041)
T KOG0243|consen 491 KLQNKNKELESLKEELQQAKATLKEEEEIISQQE 524 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 233334444455555555544444444443
No 353
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=33.55 E-value=1.2e+03 Score=30.23 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008232 501 CLKRLLAWEKQKAKLQEE 518 (573)
Q Consensus 501 ~lkkl~~WEkQK~~LQEE 518 (573)
.+-+++.-...+..+|++
T Consensus 904 ~~~~~~~~~~~l~e~~s~ 921 (1294)
T KOG0962|consen 904 LLERIQPLKVELEEAQSE 921 (1294)
T ss_pred hHhhhcchhhhHHHHHHH
Confidence 333333333333333333
No 354
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=33.39 E-value=6.5e+02 Score=27.21 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=11.8
Q ss_pred HHHhhhhHHHHHHHHHhh
Q 008232 464 RRLETENAEIRAEMEASK 481 (573)
Q Consensus 464 rrLE~ena~lr~EmEAaK 481 (573)
++|..+++.|+.+.++++
T Consensus 134 ~~lvq~I~~L~k~le~~~ 151 (294)
T COG1340 134 RELVQKIKELRKELEDAK 151 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444456677777777776
No 355
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=33.37 E-value=4e+02 Score=24.81 Aligned_cols=74 Identities=30% Similarity=0.363 Sum_probs=51.9
Q ss_pred HhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 466 LETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKR-LLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 466 LE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkk-l~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
+++.++-|-.+||-.|.+=.| +.++++.|+. +++-..|..-+..-+..-+.||..+.+.|+.-|....++|
T Consensus 14 l~n~La~Le~slE~~K~S~~e--------L~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~ 85 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGE--------LAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666665554333 3555555654 4677888888888899999999999999998666666888
Q ss_pred hhh
Q 008232 545 VRL 547 (573)
Q Consensus 545 ~~~ 547 (573)
++.
T Consensus 86 ~r~ 88 (107)
T PF09304_consen 86 SRL 88 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 356
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=32.97 E-value=5.7e+02 Score=26.42 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=7.0
Q ss_pred HHHHHHHHHhhhhhhhhh
Q 008232 442 LSEMENALRKASGQVDRA 459 (573)
Q Consensus 442 LsEmEnAl~kas~QldrA 459 (573)
+...+..+..|..+++|.
T Consensus 106 ~~~~~~~l~~a~~~~~R~ 123 (327)
T TIGR02971 106 LNRLEAELETAQREVDRY 123 (327)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333444444333
No 357
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=32.72 E-value=9.1e+02 Score=28.72 Aligned_cols=157 Identities=20% Similarity=0.264 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcHHHHHHHHhhHHH--HHH---------------hhhhcccchh
Q 008232 375 VVTMLHQIKDLERQVKERKEWAHQKAMQA-ARKLSNDLTELKMLRMEREE--TQR---------------LKKGKQTLED 436 (573)
Q Consensus 375 il~Lv~rv~eLq~qlkewtdWA~qKvmQa-a~rL~kd~~ELk~LR~Ekee--~~r---------------lkKeKq~lEe 436 (573)
+-+|.+++-++.+++. .-|=.|+ .++|...++++..++-+.-+ +.- |+++.+.+=+
T Consensus 123 ~~~lk~~lee~~~el~------~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~ 196 (629)
T KOG0963|consen 123 NEELKEELEEVNNELA------DLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQE 196 (629)
T ss_pred HHHHHHHHHHHHHHHh------hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555443 3344444 35666667777766655443 111 1112222211
Q ss_pred h---HHhhHHHHHHHHHhhhhhhhhhhHH----HHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008232 437 T---TMKRLSEMENALRKASGQVDRANAA----VRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWE 509 (573)
Q Consensus 437 ~---T~KrLsEmEnAl~kas~QldrAna~----vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WE 509 (573)
- .-|+++.|+.|+..+..|+.-..+. +--.-.|...+=.|.|-|+=.+.. +.||...|.-=..=-
T Consensus 197 q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~--------lE~e~e~L~~ql~~~ 268 (629)
T KOG0963|consen 197 QLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVF--------LEREVEQLREQLAKA 268 (629)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhh
Confidence 1 1255666666666666666666666 333333344444455555444443 334433333322222
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHhHhhhh
Q 008232 510 KQKAKLQ--EEIANEKEKIKELQQCLARIQQDQKETEV 545 (573)
Q Consensus 510 kQK~~LQ--EEla~eK~Kl~~l~qel~qak~~q~q~E~ 545 (573)
.....+- ++|.+....+.+...+.++.....+++|+
T Consensus 269 N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~ 306 (629)
T KOG0963|consen 269 NSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEA 306 (629)
T ss_pred hhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 2223333 44555555555555554444444444443
No 358
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=32.72 E-value=1.4e+02 Score=32.61 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhh
Q 008232 503 KRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLIC 549 (573)
Q Consensus 503 kkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~ 549 (573)
.|+...|..-..|++.+..-.+.+..+.+++.+.++....+|.+-++
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45666666666666666666666666666666666666666665554
No 359
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.30 E-value=2.3e+02 Score=27.62 Aligned_cols=6 Identities=33% Similarity=0.689 Sum_probs=2.1
Q ss_pred HHHHHH
Q 008232 413 ELKMLR 418 (573)
Q Consensus 413 ELk~LR 418 (573)
+++.++
T Consensus 133 ~~~~~~ 138 (192)
T PF05529_consen 133 KLEALK 138 (192)
T ss_pred HHHHHH
Confidence 333333
No 360
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=32.22 E-value=1.2e+02 Score=31.64 Aligned_cols=52 Identities=33% Similarity=0.490 Sum_probs=29.7
Q ss_pred HHHHHHhhHHH-HHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHH
Q 008232 413 ELKMLRMEREE-TQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRA 475 (573)
Q Consensus 413 ELk~LR~Ekee-~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~ 475 (573)
+||.++-|--| .+.+.|||..| +|+|.|+|..+ +-.+-...+||.|||.|--
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL----~~eleele~e~-------ee~~erlk~le~E~s~LeE 184 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEEL----LKELEELEAEY-------EEVQERLKRLEVENSRLEE 184 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 34444444333 44455555433 57777777544 4455666788888887753
No 361
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=32.21 E-value=9.6e+02 Score=28.81 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 509 EKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 509 EkQK~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
++|+.-+++-|+.+-++|.++-+++..+++
T Consensus 684 ~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 684 ESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777666666554
No 362
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=32.18 E-value=6.9e+02 Score=27.17 Aligned_cols=81 Identities=25% Similarity=0.273 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhc-ccchhhHHhhHHHHHHHHHhhhh
Q 008232 376 VTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGK-QTLEDTTMKRLSEMENALRKASG 454 (573)
Q Consensus 376 l~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeK-q~lEe~T~KrLsEmEnAl~kas~ 454 (573)
..|++.+.+|+.++.--. ..++=+.-+|| +.|-.+.+++...++.. +. -.+-.|+.|+=.-|.+-..
T Consensus 242 ~~l~~~l~~L~~~lslL~---~~~Ld~i~~rl-------~~L~~~~~~l~~~~~~~~~~--~~~e~KI~eLy~~l~~~~~ 309 (388)
T PF04912_consen 242 SPLLPALNELERQLSLLD---PAKLDSIERRL-------KSLLSELEELAEKRKEAKED--AEQESKIDELYEILPRWDP 309 (388)
T ss_pred chHHHHHHHHHHHHHhcC---HHHHHHHHHHH-------HHHHHHHHHHHhcccccccc--ccchhHHHHHHHHHHHHHH
Confidence 357778888888887663 23444444444 44444444433333322 11 1234667665555555555
Q ss_pred hhhhhhHHHHHHhh
Q 008232 455 QVDRANAAVRRLET 468 (573)
Q Consensus 455 QldrAna~vrrLE~ 468 (573)
=..-.=..|.||.+
T Consensus 310 ~~~~lP~lv~RL~t 323 (388)
T PF04912_consen 310 YAPSLPSLVERLKT 323 (388)
T ss_pred HhhhhhHHHHHHHH
Confidence 44555566777776
No 363
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=31.75 E-value=16 Score=42.71 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=13.0
Q ss_pred cccccCchhhhHHHHhHHHhh
Q 008232 113 GHCYGGMDVLTNILHNSLAYL 133 (573)
Q Consensus 113 G~CYGplDPVSNII~NTI~yl 133 (573)
+-|.++.|-+..||.+-|.+.
T Consensus 23 ~~~~~~~dL~DGv~L~evL~q 43 (713)
T PF05622_consen 23 APCSSYEDLSDGVALAEVLHQ 43 (713)
T ss_dssp S---SHHHHTTSHHHHHHHHH
T ss_pred CCcCCHHHccchHHHHHHHHH
Confidence 346677777777887777654
No 364
>PLN02678 seryl-tRNA synthetase
Probab=31.52 E-value=4.2e+02 Score=29.92 Aligned_cols=31 Identities=10% Similarity=0.240 Sum_probs=20.3
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhHHHHHHhh
Q 008232 438 TMKRLSEMENALRKASGQVDRANAAVRRLET 468 (573)
Q Consensus 438 T~KrLsEmEnAl~kas~QldrAna~vrrLE~ 468 (573)
..-+|.++....++...++|..++.--.+..
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~erN~~sk 61 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKEFNKLNK 61 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888887777655544443333
No 365
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.42 E-value=5.2e+02 Score=28.08 Aligned_cols=56 Identities=20% Similarity=0.448 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHhhhcHHHH-HHHHhhHHHHHH
Q 008232 370 QKDEIVVTMLHQI--KDLERQVKERKEWAHQKAMQAA-RKLSNDLTEL-KMLRMEREETQR 426 (573)
Q Consensus 370 ~KdEmil~Lv~rv--~eLq~qlkewtdWA~qKvmQaa-~rL~kd~~EL-k~LR~Ekee~~r 426 (573)
+.+++|..|+.-+ ...+.+|+.|.. .|+..++.- .|+..+...+ +.+..|+++.++
T Consensus 101 ~vEdii~nL~~~~d~~~te~~l~~y~~-~n~~~I~~n~~~~~~e~~~~~~~~~~E~~~~~~ 160 (309)
T TIGR00570 101 EVEDIVYNLTNNIDLENTKKKIETYQK-ENKDVIQKNKEKSTREQEELEEALEFEKEEEEQ 160 (309)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHH-HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5788999999865 456666666654 334444433 3333343333 334444444443
No 366
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=31.25 E-value=3.6e+02 Score=23.65 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=29.3
Q ss_pred HHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHh
Q 008232 414 LKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLE 467 (573)
Q Consensus 414 Lk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE 467 (573)
++-+|...|....--+-+. .......++-++....+.+..++|..++.--.+.
T Consensus 4 ik~ir~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~s 56 (108)
T PF02403_consen 4 IKLIRENPEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELS 56 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4555665555444333333 3445666777777777776666665554443333
No 367
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=31.22 E-value=4e+02 Score=27.50 Aligned_cols=67 Identities=24% Similarity=0.344 Sum_probs=49.0
Q ss_pred HHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 412 TELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 412 ~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
.|+.+|++.++--.++...-|.+...+-.++++++.....+..++..+... +.++++.+..||++.=
T Consensus 75 ~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~---l~~~~~k~~~~l~~l~ 141 (256)
T PF14932_consen 75 EELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKE---LSAECSKLNNELNQLL 141 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 345555555665556666667777778888889988888888888777655 7788888888888753
No 368
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=31.17 E-value=5.4e+02 Score=25.60 Aligned_cols=90 Identities=13% Similarity=0.287 Sum_probs=47.0
Q ss_pred HHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 448 ALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKR-----EKKCLKRLLAWEKQKAKLQEEIANE 522 (573)
Q Consensus 448 Al~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kk-----ekk~lkkl~~WEkQK~~LQEEla~e 522 (573)
.|..+..+||-..-..-.|+..|+.||.++|.++..= +..+.=+.-+.. -.+...|=..|..+...+-.=+.+|
T Consensus 61 dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N-~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~e 139 (182)
T PF15035_consen 61 DLEEALIRLEEEQQRSEELAQVNALLREQLEQARKAN-EALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSE 139 (182)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3334555555555555666666666666666665321 111100000000 0011112245667777777777888
Q ss_pred HHHHHHHHHHHHHHHh
Q 008232 523 KEKIKELQQCLARIQQ 538 (573)
Q Consensus 523 K~Kl~~l~qel~qak~ 538 (573)
-.+|..|=.++...+-
T Consensus 140 h~rll~LWr~v~~lRr 155 (182)
T PF15035_consen 140 HSRLLSLWREVVALRR 155 (182)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 8888777777766543
No 369
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=31.12 E-value=6.4e+02 Score=26.44 Aligned_cols=47 Identities=17% Similarity=0.103 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhH-HHHHHhhhhc
Q 008232 385 LERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMER-EETQRLKKGK 431 (573)
Q Consensus 385 Lq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ek-ee~~rlkKeK 431 (573)
+..-.-.+..-|..-+.|++.-|.+-..+|+..|+.+ .+..++++..
T Consensus 75 ~~~~a~q~e~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l 122 (252)
T cd07675 75 LNDYAGQREVVAEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQQYL 122 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555566777777777888888888888 6666666644
No 370
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=31.04 E-value=1.3e+02 Score=29.52 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=20.4
Q ss_pred HHHhhhhcccchhh---HHhhHHHHHHHHHhhh
Q 008232 424 TQRLKKGKQTLEDT---TMKRLSEMENALRKAS 453 (573)
Q Consensus 424 ~~rlkKeKq~lEe~---T~KrLsEmEnAl~kas 453 (573)
+++|+++-..|++- +++.|.++++.|..+-
T Consensus 31 I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 31 IQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455554 6799999999999887
No 371
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=31.03 E-value=4.3e+02 Score=24.40 Aligned_cols=100 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEE 518 (573)
Q Consensus 439 ~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEE 518 (573)
|.+..-|+..|+=+..+-|.|-....+.-.+......+++.-.--..+....+...... --+...+..|..-...|.+.
T Consensus 1 m~~~~rL~~vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~-g~~~~~l~~~~~fi~~L~~~ 79 (147)
T PRK05689 1 MSRASALATLLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSA-GMTSSWWINYQQFLQQLEKA 79 (147)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 008232 519 IANEKEKIKELQQCLARIQQD 539 (573)
Q Consensus 519 la~eK~Kl~~l~qel~qak~~ 539 (573)
|..++..|..+++++++..+.
T Consensus 80 I~~q~~~v~~~~~~ve~~r~~ 100 (147)
T PRK05689 80 ITQQRQQLTQWTQKVDNARKY 100 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 372
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=31.02 E-value=2.6e+02 Score=25.54 Aligned_cols=49 Identities=27% Similarity=0.408 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 485 AESVTTCLEVAKREKKCL-KRLLAWEKQKAKLQEEIANEKEKIKELQQCL 533 (573)
Q Consensus 485 ~ES~~sc~e~~kkekk~l-kkl~~WEkQK~~LQEEla~eK~Kl~~l~qel 533 (573)
.|..--||+.+-.....+ ++++.+..+...|+.+++..++++..|++|+
T Consensus 68 ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 68 IEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777887665554443 4566777777777777777777777777664
No 373
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=30.96 E-value=1.2e+03 Score=29.43 Aligned_cols=157 Identities=23% Similarity=0.353 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hcHHHHHHHHhhHH--HHHHhhhhcccchhhHHhhHHH
Q 008232 373 EIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLS------NDLTELKMLRMERE--ETQRLKKGKQTLEDTTMKRLSE 444 (573)
Q Consensus 373 Emil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~------kd~~ELk~LR~Eke--e~~rlkKeKq~lEe~T~KrLsE 444 (573)
|.=-+++.++-+||++|++-.-=|.+ +..+--++. -|--|+-+|-||.- -++.|+-|-.. ...|+.|
T Consensus 269 EfkSkim~qqa~Lqrel~raR~e~ke-aqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~----lkEr~de 343 (1243)
T KOG0971|consen 269 EFKSKIMEQQADLQRELKRARKEAKE-AQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEA----LKERVDE 343 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 44456777778888777643211110 111111111 13346677776653 34555444322 2357888
Q ss_pred HHHHHHhhhhhhhh------hhH--HHHHHhhhhHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 445 MENALRKASGQVDR------ANA--AVRRLETENAEIRAEMEA-SKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKL 515 (573)
Q Consensus 445 mEnAl~kas~Qldr------Ana--~vrrLE~ena~lr~EmEA-aKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~L 515 (573)
||--|.=...+.+- +-+ -..+||-.|+-||--+=- --|+|.|.-. .|.+.|--.+----+--.+.+|-+|
T Consensus 344 letdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d-~qK~~kelE~k~sE~~eL~r~kE~L 422 (1243)
T KOG0971|consen 344 LETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQD-HQKLQKELEKKNSELEELRRQKERL 422 (1243)
T ss_pred HHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 87766544333321 112 235677777766532210 1122322211 1111111111111233456677778
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008232 516 QEEIANEKEKIKELQQCLAR 535 (573)
Q Consensus 516 QEEla~eK~Kl~~l~qel~q 535 (573)
+.++..-..+|..|++++.-
T Consensus 423 sr~~d~aEs~iadlkEQVDA 442 (1243)
T KOG0971|consen 423 SRELDQAESTIADLKEQVDA 442 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88887777788877777643
No 374
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.89 E-value=1.2e+02 Score=29.88 Aligned_cols=74 Identities=28% Similarity=0.335 Sum_probs=14.0
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 461 AAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (573)
Q Consensus 461 a~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~ 534 (573)
+.+..++...+.++.|+..+...-.+.+.....+...=.+.-+++..=++....|+.|++.-+.+|..+..+|.
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ 140 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELK 140 (194)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666555555444444444444455555555555555555555554444
No 375
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=30.60 E-value=1.2e+03 Score=29.43 Aligned_cols=65 Identities=9% Similarity=0.124 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhh
Q 008232 485 AESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLIC 549 (573)
Q Consensus 485 ~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~ 549 (573)
++-...|.++..|-++...++.-.++.-..++-++..-|.+-.+.|..+.++++...+.++..+-
T Consensus 293 s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 293 SQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34456677777777777778888888888888888888888888888888888888888777653
No 376
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=30.48 E-value=5.1e+02 Score=25.07 Aligned_cols=94 Identities=22% Similarity=0.263 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHH-------------HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRA-------------EMEASKLSAAESVTTCLEVAKREKKCLKRLL 506 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~-------------EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~ 506 (573)
-|++-.|-++.-.-..||.|+++|+. |+++. -|++.|++-.+.. -...-++|.
T Consensus 29 ~r~a~a~~~~~~r~seldqA~~~~~e-----ae~k~~~~~a~~P~~~~~~~wqlkvr~a~~d---------v~nkq~~l~ 94 (136)
T PF11570_consen 29 ERQASAEQALNGRRSELDQANKKVKE-----AEIKQDEFFANNPPHEYGRGWQLKVRRAQKD---------VQNKQNKLK 94 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCCCCTT-TTSSCHHHHHHHHHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH-----HHhcccccccCCCccccccHHHHHHHHHHHH---------HHHHHHHHH
Confidence 57777888899999999999999998 33332 3555444322211 122334556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhh
Q 008232 507 AWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 507 ~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~ 547 (573)
.=++.+.-+++||..-+.=|.+..+.--+...-.+..|.|+
T Consensus 95 AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAenkl 135 (136)
T PF11570_consen 95 AAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAENKL 135 (136)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Confidence 66666777777776666666666666666665555555553
No 377
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=30.45 E-value=7.6e+02 Score=27.12 Aligned_cols=121 Identities=16% Similarity=0.290 Sum_probs=62.5
Q ss_pred HhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 008232 418 RMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKR 497 (573)
Q Consensus 418 R~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kk 497 (573)
|.-.|....+++.-...=..|..-|.-+...|.++ |||-.+.-.-|-.....+..|--+++-.=++.-..+.+++..
T Consensus 219 R~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~---lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~ 295 (359)
T PF10498_consen 219 RSHLEQMKQHKKSIESALPETKSQLDKLQQDISKT---LEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG 295 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33344444444444444444554454444444332 344444444444444445555444444434444444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhHhHhhhhhhh
Q 008232 498 EKKCLKRLLAWEKQKAKLQEEIANEKEK-------------IKELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 498 ekk~lkkl~~WEkQK~~LQEEla~eK~K-------------l~~l~qel~qak~~q~q~E~~~~ 548 (573)
...--.+-+.+.|||..-|.. |.++.+.+.+.|+-..||+.|+-
T Consensus 296 -------V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 296 -------VSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 233334445566666655554 34678888888888888888864
No 378
>PRK10869 recombination and repair protein; Provisional
Probab=30.28 E-value=8.9e+02 Score=27.85 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008232 377 TMLHQIKDLERQVKERK 393 (573)
Q Consensus 377 ~Lv~rv~eLq~qlkewt 393 (573)
.+..+.++++++++++.
T Consensus 161 ~~y~~~~~~~~~l~~l~ 177 (553)
T PRK10869 161 AAYQLWHQSCRDLAQHQ 177 (553)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555554443
No 379
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.11 E-value=4.5e+02 Score=29.17 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=32.2
Q ss_pred HHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhh
Q 008232 414 LKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETEN 470 (573)
Q Consensus 414 Lk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~en 470 (573)
++-+|...+++.+--+-+. +. ....+|.++.+..++...|+|..++....+-.++
T Consensus 4 ~k~ir~n~~~v~~~l~~R~-~~-~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i 58 (425)
T PRK05431 4 IKLIRENPEAVKEALAKRG-FP-LDVDELLELDEERRELQTELEELQAERNALSKEI 58 (425)
T ss_pred HHHHHhCHHHHHHHHHhcC-Cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665554444443 32 2377888888888888777765555444444333
No 380
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=30.10 E-value=2.6e+02 Score=26.67 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhh
Q 008232 505 LLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVR 546 (573)
Q Consensus 505 l~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~ 546 (573)
+...|..--+||.|+..--..|..|.++|..+...-..+|.|
T Consensus 89 i~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 89 IKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345566666788888888888888888888888777777765
No 381
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=30.07 E-value=5.7e+02 Score=25.52 Aligned_cols=147 Identities=20% Similarity=0.229 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHh
Q 008232 373 EIVVTMLHQIKDLERQVKERKEWAHQKAMQ-AARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRK 451 (573)
Q Consensus 373 Emil~Lv~rv~eLq~qlkewtdWA~qKvmQ-aa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~k 451 (573)
..+..+..+.+.++.++++..+|.+.-+++ --.++-.|...+..+.++.+ ||....-++-.|+.+|+-+.=+|
T Consensus 58 ~~L~~~s~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~------ke~k~~~~~l~K~~se~~Kl~KK 131 (219)
T PF08397_consen 58 DALMQISEVHRRIENELEEVFKAFHSELIQPLEKKLEEDKKYITQLEKDYE------KEYKRKRDELKKAESELKKLRKK 131 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 567888999999999999999999998884 55677777777777666554 22222223333445555554455
Q ss_pred hhh-hh---hhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 452 ASG-QV---DRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIK 527 (573)
Q Consensus 452 as~-Ql---drAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~ 527 (573)
+.+ .- -.....++.+..+.+ |||..- ..+|.+++.-|++-.=-| -+++...++.+++-.-+=+.
T Consensus 132 ~~kgk~~~~~~~~~~~~~v~~~~~----ele~~~------~~~~r~al~EERrRyc~l--v~~~~~~~~~~~~~~~~~~~ 199 (219)
T PF08397_consen 132 SRKGKDDQKYELKEALQDVTERQS----ELEEFE------KQSLREALLEERRRYCFL--VEKHCSVVKSELAFHNEAVE 199 (219)
T ss_dssp CCCCTSCHHHHHHHHHHHHHHHHH----HHHHHH------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccccHHHHHHHHHHHHHHH----HHHHHH------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 543 11 011122333333333 333211 245666766666644333 47788888888876665566
Q ss_pred HHHHHHHHHH
Q 008232 528 ELQQCLARIQ 537 (573)
Q Consensus 528 ~l~qel~qak 537 (573)
-|++-+....
T Consensus 200 ~L~~~~~~w~ 209 (219)
T PF08397_consen 200 HLQEKLDDWQ 209 (219)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhHHHH
Confidence 6666665533
No 382
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=29.89 E-value=5.1e+02 Score=28.34 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHhh
Q 008232 519 IANEKEKIKELQQCLARIQQDQKET 543 (573)
Q Consensus 519 la~eK~Kl~~l~qel~qak~~q~q~ 543 (573)
|-.-|.||-+||+.|+.++...+.+
T Consensus 189 LNeKK~KIR~lq~~L~~~~~~~~~~ 213 (342)
T PF06632_consen 189 LNEKKAKIRELQRLLASAKEEEKSP 213 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhhccccch
Confidence 3456899999999999988765543
No 383
>PRK10865 protein disaggregation chaperone; Provisional
Probab=29.80 E-value=5.6e+02 Score=31.09 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=13.8
Q ss_pred HHHHHhhhhHHHHHHHHHhhhh
Q 008232 462 AVRRLETENAEIRAEMEASKLS 483 (573)
Q Consensus 462 ~vrrLE~ena~lr~EmEAaKL~ 483 (573)
...+|+.....|+.|+++++..
T Consensus 411 ~L~rLer~l~~L~~E~e~l~~e 432 (857)
T PRK10865 411 ELDRLDRRIIQLKLEQQALMKE 432 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3466666666666666666554
No 384
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=29.75 E-value=5.7e+02 Score=25.39 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008232 513 AKLQEEIANEKEKIKELQQCLAR 535 (573)
Q Consensus 513 ~~LQEEla~eK~Kl~~l~qel~q 535 (573)
.+.++||..-|....+|..+|.+
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44577777777666666666554
No 385
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.74 E-value=4.7e+02 Score=29.69 Aligned_cols=96 Identities=25% Similarity=0.352 Sum_probs=58.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHH
Q 008232 370 QKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENAL 449 (573)
Q Consensus 370 ~KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl 449 (573)
.++|-++....+..+|+.|.. -++.=.-+...+-.-..-|-.+.+|++...+-.+.+++.+...| |++-+
T Consensus 303 d~~Et~~v~lke~~~Le~q~e-----~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~~E~v~~~-----md~~~ 372 (446)
T KOG4438|consen 303 DSLETKVVELKEILELEDQIE-----LNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRKTESVKAM-----MDDNI 372 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHH
Confidence 467888888999999988876 22322222222222233344455566666666666666343333 34444
Q ss_pred HhhhhhhhhhhHHHHHHhhhhHHHHH
Q 008232 450 RKASGQVDRANAAVRRLETENAEIRA 475 (573)
Q Consensus 450 ~kas~QldrAna~vrrLE~ena~lr~ 475 (573)
.+..-==+.-|+.+.++|.+|.++..
T Consensus 373 ~~~n~V~~kr~a~~~kie~~~~~ik~ 398 (446)
T KOG4438|consen 373 EKYNVVRQKRNAKVKKIEEKNEEIKK 398 (446)
T ss_pred HHhcccchhhccHHHHHHHHHHHHHH
Confidence 44444446778899999999988765
No 386
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.68 E-value=1.3e+03 Score=29.43 Aligned_cols=92 Identities=22% Similarity=0.200 Sum_probs=48.6
Q ss_pred hHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 437 TTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQ 516 (573)
Q Consensus 437 ~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQ 516 (573)
.|..|+.-+|.-+.+...++|--.-.+.+.+.+++++ .|||. |= -+.+.+-=-|+. +.-|.+...-++..+|+
T Consensus 804 d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-k~-k~~~~~~~~e~~----e~~k~~~~~~~~~tkl~ 876 (1141)
T KOG0018|consen 804 DTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-KN-KSKFEKKEDEIN----EVKKILRRLVKELTKLD 876 (1141)
T ss_pred cHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-HH-HHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 4666666666666666666666666666666666666 66666 21 111111111111 11123344455666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008232 517 EEIANEKEKIKELQQCLAR 535 (573)
Q Consensus 517 EEla~eK~Kl~~l~qel~q 535 (573)
-||..-.++|.+++-|-+-
T Consensus 877 ~~i~~~es~ie~~~~er~~ 895 (1141)
T KOG0018|consen 877 KEITSIESKIERKESERHN 895 (1141)
T ss_pred hhhhhhhhHHHHHHHHHHH
Confidence 6666666666665555443
No 387
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=29.20 E-value=6.3e+02 Score=25.72 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=14.8
Q ss_pred HHhhHHHHHHHHHhhhhhhhh
Q 008232 438 TMKRLSEMENALRKASGQVDR 458 (573)
Q Consensus 438 T~KrLsEmEnAl~kas~Qldr 458 (573)
.-|++.+.+.+|+||..+-++
T Consensus 116 ~~k~~~~a~~~leKAK~~Y~~ 136 (234)
T cd07652 116 AEKKVQDAEAAAEKAKARYDS 136 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888887755443
No 388
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=29.10 E-value=9.3e+02 Score=27.71 Aligned_cols=107 Identities=17% Similarity=0.261 Sum_probs=65.6
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhH----------HHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008232 438 TMKRLSEMENALRKASGQVDRANA----------AVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLA 507 (573)
Q Consensus 438 T~KrLsEmEnAl~kas~QldrAna----------~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~ 507 (573)
..+.|.++....+....+++|-+. .++.++.+...|....+...-.-.+.....-++..+=++..+++..
T Consensus 311 l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ 390 (560)
T PF06160_consen 311 LYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEE 390 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence 456667777766666666666543 4677777777777777776666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 508 WEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 508 WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
-+++-..+.+.|..-+..-...++.|.+.+..-.++.
T Consensus 391 ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ik 427 (560)
T PF06160_consen 391 IEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIK 427 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655555444444444444444444433
No 389
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=28.73 E-value=2.9e+02 Score=25.12 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=12.6
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHH
Q 008232 455 QVDRANAAVRRLETENAEIRAEM 477 (573)
Q Consensus 455 QldrAna~vrrLE~ena~lr~Em 477 (573)
.++.-+-.+.++|.++..|..|.
T Consensus 71 ~ie~L~~~l~~rE~e~~~Le~el 93 (94)
T PF04576_consen 71 AIESLKDILYKREKEIQSLEAEL 93 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555666666666555554
No 390
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=28.65 E-value=6.3e+02 Score=25.54 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 008232 385 LERQVKERKEWA 396 (573)
Q Consensus 385 Lq~qlkewtdWA 396 (573)
|+..+.++.+|.
T Consensus 83 L~~~v~~l~~~~ 94 (239)
T cd07647 83 LREEAEKLEEFR 94 (239)
T ss_pred HHHHHHHHHHHH
Confidence 333445555554
No 391
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.37 E-value=3.4e+02 Score=32.05 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=26.6
Q ss_pred hHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 008232 437 TTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEA 479 (573)
Q Consensus 437 ~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEA 479 (573)
+.++-|.||-.-+...|-+|-...+--|+|..|+++++.-.|+
T Consensus 76 s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEe 118 (907)
T KOG2264|consen 76 SIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEE 118 (907)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455566666666666666655556667777777777665543
No 392
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=28.26 E-value=3.5e+02 Score=31.33 Aligned_cols=88 Identities=15% Similarity=0.280 Sum_probs=42.2
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 008232 446 ENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLL--------AWEKQKAKLQE 517 (573)
Q Consensus 446 EnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~--------~WEkQK~~LQE 517 (573)
+.-|..-..|+..|++-+..+..|.-.|..-.+.+ .+.-.+|.+-++..+..+.+|| +.|.|-..|-|
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~a----E~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSE 494 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESA----EKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSE 494 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44455566666666676666666655555444433 1112233333333333333332 34455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008232 518 EIANEKEKIKELQQCLARIQ 537 (573)
Q Consensus 518 Ela~eK~Kl~~l~qel~qak 537 (573)
-|+.--+||++-++++++.|
T Consensus 495 HLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 495 HLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55555555555444444443
No 393
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=28.10 E-value=2.2e+02 Score=28.68 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHHhhhh
Q 008232 468 TENAEIRAEMEASKLS 483 (573)
Q Consensus 468 ~ena~lr~EmEAaKL~ 483 (573)
.+...++..++...+.
T Consensus 123 ~~l~~~~~~~~~~~i~ 138 (322)
T TIGR01730 123 ASLASAQLNLRYTEIR 138 (322)
T ss_pred HHHHHHHHhhccCEEE
Confidence 3334444444444443
No 394
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=27.98 E-value=3.3e+02 Score=29.94 Aligned_cols=69 Identities=29% Similarity=0.229 Sum_probs=53.1
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 455 QVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKR---------EKKCLKRLLAWEKQKAKLQEEIANEK 523 (573)
Q Consensus 455 QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kk---------ekk~lkkl~~WEkQK~~LQEEla~eK 523 (573)
||-.--.--++||+|.-.|..--++-|..-.||..++++-+|| ..|---.+.-||.|-.+-|||-..+-
T Consensus 229 Qv~SL~~HQ~KLEaEL~q~Ee~hq~kKrk~~estdsf~~eLKr~c~~kvevd~eK~~~~i~q~eeq~rkr~eE~~k~a 306 (410)
T KOG4715|consen 229 QVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKMAAEIAQAEEQARKRQEEREKEA 306 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHhHhHHHhhH
Confidence 4444445567888888888877888888999999999999998 35555667789999999998865543
No 395
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.59 E-value=5.4e+02 Score=24.43 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=15.5
Q ss_pred HHHHHHHhhhhhhhhhhHHHH
Q 008232 444 EMENALRKASGQVDRANAAVR 464 (573)
Q Consensus 444 EmEnAl~kas~QldrAna~vr 464 (573)
-|.+|...-+.|||..-.+++
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~ 60 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLS 60 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888887766554
No 396
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=27.56 E-value=4.3e+02 Score=24.54 Aligned_cols=67 Identities=27% Similarity=0.337 Sum_probs=43.3
Q ss_pred hhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008232 467 ETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAW---EKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (573)
Q Consensus 467 E~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~W---EkQK~~LQEEla~eK~Kl~~l~qel~qak~~ 539 (573)
+.+...|..+++-||-+.-+.--.=+ .+.|..++.+ ++-+...|.+|..-++||.+.+.+|.++++.
T Consensus 23 ~~K~~~Ie~qI~~Ak~~gN~~rv~GL------e~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~ 92 (115)
T PF06476_consen 23 EAKEQAIEKQIEYAKAHGNQHRVAGL------EKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAK 92 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHH------HHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677777777766544322111 2334444444 5667778888888888999999888887654
No 397
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=27.55 E-value=5.3e+02 Score=24.38 Aligned_cols=42 Identities=31% Similarity=0.308 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 494 VAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLAR 535 (573)
Q Consensus 494 ~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~q 535 (573)
|-||=.=.-+-+...|.|-.-+|+|...+|++|.++|+.-+-
T Consensus 74 V~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~ 115 (120)
T KOG3478|consen 74 VGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQP 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444445566778999999999999999999999987543
No 398
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=27.52 E-value=4.3e+02 Score=28.61 Aligned_cols=113 Identities=19% Similarity=0.305 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhh-------hcccchhhHHh
Q 008232 372 DEIVVTMLHQIKDLERQVKERKEWA----HQKAMQAARKLSNDLTELKMLRMEREETQRLKK-------GKQTLEDTTMK 440 (573)
Q Consensus 372 dEmil~Lv~rv~eLq~qlkewtdWA----~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkK-------eKq~lEe~T~K 440 (573)
++++-.=-.--+|||+....-+-=| -+|=.|++...++--+||+. +-+.|.+.+++ ++..++++|..
T Consensus 15 e~iLaRHr~E~keLq~ki~~mKk~a~k~~k~~rK~~~~~~~~le~el~q--kH~kEL~~~~~~~~~e~~~~e~~~~s~l~ 92 (302)
T KOG2606|consen 15 EEILARHRRERKELQAKITSMKKAAPKGNKKKRKELTEDIAKLEKELSQ--KHKKELEKLKLINESEVTPKENLIESVLS 92 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhHHHH--HHHHHHHhhcccCccccCccccchhhhhc
Confidence 4444433334455555554433222 22233444444443334332 22334444443 47788899988
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHH
Q 008232 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTT 490 (573)
Q Consensus 441 rLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~s 490 (573)
-+++|= ..+..+.=+. +-.||+.-.-+.-++.+||+++.-.++...
T Consensus 93 ~~a~~~---~~~~ee~P~~-sKa~k~r~k~r~e~r~~e~~~~~e~~~~~~ 138 (302)
T KOG2606|consen 93 PIANMS---LENKEETPRQ-SKARKRREKKRKEERKREAEKIAEEESLSN 138 (302)
T ss_pred cccccc---ccccccCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777731 1111122222 333444445566677788888876666543
No 399
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=27.37 E-value=2.2e+02 Score=28.73 Aligned_cols=11 Identities=27% Similarity=0.289 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 008232 527 KELQQCLARIQ 537 (573)
Q Consensus 527 ~~l~qel~qak 537 (573)
..++.+|.+++
T Consensus 119 ~~~~~~l~~~~ 129 (322)
T TIGR01730 119 EAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 400
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=27.28 E-value=3.7e+02 Score=26.15 Aligned_cols=76 Identities=12% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHhhhhcccchhhHHhhHHH--------HHHHHHhhhhhhhhhhHHHHH-HhhhhHHHHHHHHHhhhhhh
Q 008232 415 KMLRMEREETQRLKKGKQTLEDTTMKRLSE--------MENALRKASGQVDRANAAVRR-LETENAEIRAEMEASKLSAA 485 (573)
Q Consensus 415 k~LR~Ekee~~rlkKeKq~lEe~T~KrLsE--------mEnAl~kas~QldrAna~vrr-LE~ena~lr~EmEAaKL~A~ 485 (573)
+..+.+.+++++.|++-+.|.+.+.+.|.+ ++.|-..+..+.+.+....+. .+.-.+.-+.+.+..|-.|.
T Consensus 38 ~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al 117 (154)
T PRK06568 38 LEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTAS 117 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHH
Q 008232 486 ESVTT 490 (573)
Q Consensus 486 ES~~s 490 (573)
.-+.+
T Consensus 118 ~elr~ 122 (154)
T PRK06568 118 KELQD 122 (154)
T ss_pred HHHHH
No 401
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=26.92 E-value=6.7e+02 Score=25.30 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 509 EKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 509 EkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
+-++.+|+-|++.-+.++..++++|.-...++.=..
T Consensus 149 ~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~ 184 (240)
T PF12795_consen 149 EAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQ 184 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 556667777777777777777777666655554433
No 402
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=26.60 E-value=8.1e+02 Score=26.20 Aligned_cols=104 Identities=23% Similarity=0.321 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHh-hHH---HHHHhhhhcccchhh---HHhhHH
Q 008232 371 KDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRM-ERE---ETQRLKKGKQTLEDT---TMKRLS 443 (573)
Q Consensus 371 KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~-Eke---e~~rlkKeKq~lEe~---T~KrLs 443 (573)
..|.-+.=+-+.+|||.|+-+ -|.-|+...+..+....+.+.. -.+ .++.+++.=..|..- =..|..
T Consensus 153 ~rE~~~~~~~k~keLE~Ql~~------AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~ 226 (309)
T PF09728_consen 153 LREEHFEKLLKQKELEVQLAE------AKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFE 226 (309)
T ss_pred HHHHHHHHHhhHHHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555567788877644 3444444333333333332222 000 222222211111111 236777
Q ss_pred HHHHHHHhhh-------hhhhhhhHHHHHHhhhhHHHHHHHHHh
Q 008232 444 EMENALRKAS-------GQVDRANAAVRRLETENAEIRAEMEAS 480 (573)
Q Consensus 444 EmEnAl~kas-------~QldrAna~vrrLE~ena~lr~EmEAa 480 (573)
|.+..|.|.+ .++|+-.-.+.+||-||..++.--|.+
T Consensus 227 efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~ 270 (309)
T PF09728_consen 227 EFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKS 270 (309)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7887777765 466777777777777777766655543
No 403
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=26.21 E-value=7.1e+02 Score=25.41 Aligned_cols=27 Identities=26% Similarity=0.323 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 503 KRLLAWEKQKAKLQEEIANEKEKIKEL 529 (573)
Q Consensus 503 kkl~~WEkQK~~LQEEla~eK~Kl~~l 529 (573)
.+++...-+.-+|+.|+..-+.+..+|
T Consensus 102 ~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 102 AEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 455555556666666655555555554
No 404
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=26.19 E-value=4.6e+02 Score=23.18 Aligned_cols=50 Identities=16% Similarity=0.341 Sum_probs=37.1
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008232 457 DRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLL 506 (573)
Q Consensus 457 drAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~ 506 (573)
+.....+++|....+.|-.|++.+.=++..=...|.||+.|=+..+..+.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888888888888887777777788888887766665554
No 405
>PF09607 BrkDBD: Brinker DNA-binding domain; InterPro: IPR018586 This DNA-binding domain is the first approx. 100 residues of the N-terminal end of Brinker. The structure of this domain in complex with DNA consists of four alpha-helices that contain a helix-turn-helix DNA recognition motif specific for GC-rich DNA. The Brinker nuclear repressor is a major element of the Drosophila Decapentaplegic morphogen signalling pathway []. ; PDB: 2GLO_A.
Probab=26.06 E-value=43 Score=27.91 Aligned_cols=40 Identities=30% Similarity=0.482 Sum_probs=24.9
Q ss_pred hhhhhhhHHH---HH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 481 KLSAAESVTT---CL---E-VAKREKKCLKRLLAWEKQKAKLQEEIA 520 (573)
Q Consensus 481 KL~A~ES~~s---c~---e-~~kkekk~lkkl~~WEkQK~~LQEEla 520 (573)
||.+.|++.. |+ - +.++=.=.-+..+-|-+|+..||++.+
T Consensus 11 KL~Vv~~a~~~~nc~~~~RAaarkf~V~r~~Vr~W~kqe~~L~~~~~ 57 (58)
T PF09607_consen 11 KLKVVEYAEKDNNCKGNQRAAARKFNVSRRQVRKWRKQEEELREEDA 57 (58)
T ss_dssp HHHHHHHHHH-TTTTT-HHHHHHHTTS-HHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHccchhhhHHHHHHHhCccHHHHHHHHHHHHHHHhhhc
Confidence 5666666642 33 2 233322244678899999999999864
No 406
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=25.78 E-value=5.4e+02 Score=23.83 Aligned_cols=78 Identities=12% Similarity=0.177 Sum_probs=48.1
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 446 ENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEK 525 (573)
Q Consensus 446 EnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~K 525 (573)
..+|.++...++.+......|+....+....+.+.--. --+.-.++.|..=...|.+.|..++..
T Consensus 22 ~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~---------------g~~~~~l~~~~~fl~~L~~~i~~q~~~ 86 (146)
T PRK07720 22 LGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQS---------------GLSIQEIRHYQQFVTNLERTIDHYQLL 86 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666677777777776666666542211 112235566777777777777777777
Q ss_pred HHHHHHHHHHHHh
Q 008232 526 IKELQQCLARIQQ 538 (573)
Q Consensus 526 l~~l~qel~qak~ 538 (573)
|..+.+++++.++
T Consensus 87 v~~~~~~ve~~r~ 99 (146)
T PRK07720 87 VMQAREQMNRKQQ 99 (146)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666543
No 407
>PRK06991 ferredoxin; Provisional
Probab=25.71 E-value=1.4e+02 Score=31.45 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHh
Q 008232 390 KERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRL 427 (573)
Q Consensus 390 kewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rl 427 (573)
..|..|.++++=++ +..-|.+..|.++|..++.
T Consensus 142 ~~~~~~~~~~a~~a-----r~r~~~r~~Rl~~~~~~~~ 174 (270)
T PRK06991 142 TGWDAWSQAQADAA-----RARHDARQARLRREREAAE 174 (270)
T ss_pred hHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 57777866555444 5556666667766665553
No 408
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=25.69 E-value=1.5e+03 Score=28.86 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCh
Q 008232 77 EEILLKNLEFLYNEAISKLVALGYDE 102 (573)
Q Consensus 77 r~~LL~~IhgfY~~ALaRLP~~g~~~ 102 (573)
.++++.+|..||..++..|..+ ++.
T Consensus 4 ~~~~vR~~ke~~ee~lgqli~~-lpd 28 (1195)
T KOG4643|consen 4 FECVVRNMKETDEEGLGQLIIE-LPD 28 (1195)
T ss_pred HHHHHHHHHHHHHHhccceeEe-cCc
Confidence 4577778888888888777654 444
No 409
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=25.66 E-value=5.3e+02 Score=23.74 Aligned_cols=35 Identities=34% Similarity=0.397 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
|+..-+++...|+++|+.-+..+.++++.+.++.+
T Consensus 102 ~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 102 RKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666666666666666665443
No 410
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.62 E-value=5.8e+02 Score=24.15 Aligned_cols=166 Identities=19% Similarity=0.192 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHh
Q 008232 372 DEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRK 451 (573)
Q Consensus 372 dEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~k 451 (573)
|.-..+.-+.++.|+.+|+. -.=..+++.+..+.|+.+..||-.-=..-- ..|+.+- ..|-+++.+
T Consensus 3 d~~f~~~~~~v~~le~~l~~-l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls----------~~e~~~~---~~l~~~~~~ 68 (218)
T cd07596 3 DQEFEEAKDYILKLEEQLKK-LSKQAQRLVKRRRELGSALGEFGKALIKLA----------KCEEEVG---GELGEALSK 68 (218)
T ss_pred cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhccccc---hhhHHHHHH
Confidence 44466777788888888876 335667777777888887777654110000 1121111 233344444
Q ss_pred hhhhhhhhhHH----HHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 008232 452 ASGQVDRANAA----VRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEK---- 523 (573)
Q Consensus 452 as~QldrAna~----vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK---- 523 (573)
.+.=.++.... +........+.=.++ .....+..+++++-...+..++.-++.-...+..+...+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y-------~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~ 141 (218)
T cd07596 69 LGKAAEELSSLSEAQANQELVKLLEPLKEY-------LRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPG 141 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 44333222111 111111111111111 355667777888877777777777777777766655443
Q ss_pred ---HHHHHHHHHHHHHHhHhHhhhhhhhhc-------cccccccc
Q 008232 524 ---EKIKELQQCLARIQQDQKETEVRLICL-------FPWFSTHK 558 (573)
Q Consensus 524 ---~Kl~~l~qel~qak~~q~q~E~~~~~~-------~~~~~~~~ 558 (573)
.||..++.++.++++...+++.++..+ +++|..++
T Consensus 142 ~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~ 186 (218)
T cd07596 142 IKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEER 186 (218)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666555443 55665544
No 411
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=25.57 E-value=7.2e+02 Score=25.21 Aligned_cols=111 Identities=20% Similarity=0.262 Sum_probs=71.3
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHh
Q 008232 364 ETITDDQKDEIVVTMLHQIKDLERQVKERKEWA-HQKAMQAA--RKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMK 440 (573)
Q Consensus 364 ~~vp~D~KdEmil~Lv~rv~eLq~qlkewtdWA-~qKvmQaa--~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~K 440 (573)
+|.|+.....+-+.|.+...+= ..++++. +++|+.|| ||=..|+.-+-.||.++.-.+.|-+ +=.+-|..-+
T Consensus 40 p~F~~~~~rdiY~sL~~~~~~~----~~~k~~k~~e~VLKAALLrRavedIrR~~klre~k~~l~~L~q-~GsIGDd~wq 114 (190)
T PF09802_consen 40 PWFPEHLQRDIYLSLLHMEDPP----ASEKKPKVPEKVLKAALLRRAVEDIRRIIKLREDKPALNKLYQ-NGSIGDDLWQ 114 (190)
T ss_pred CCCCchhHHHHHHHHHhccCCc----cccccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-CCCccHHHHH
Confidence 7899888777777777664331 3344554 89999987 6777777777777777776666533 2244566666
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh-hhhhhhHHHHHHHHH
Q 008232 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK-LSAAESVTTCLEVAK 496 (573)
Q Consensus 441 rLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK-L~A~ES~~sc~e~~k 496 (573)
|+. .+...+|.|.-++..|=++=+ =++.-=..+|.|+.-
T Consensus 115 rf~-----------------~aeKe~E~El~eVv~EAn~l~pgWgq~IF~~A~Ei~~ 154 (190)
T PF09802_consen 115 RFQ-----------------RAEKEMEEELKEVVQEANALKPGWGQTIFQSANEICF 154 (190)
T ss_pred HHH-----------------HHHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHH
Confidence 664 345567788888887766643 334444556665443
No 412
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=25.47 E-value=4.3e+02 Score=28.31 Aligned_cols=13 Identities=31% Similarity=0.785 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 008232 507 AWEKQKAKLQEEI 519 (573)
Q Consensus 507 ~WEkQK~~LQEEl 519 (573)
.|..+...|.+.+
T Consensus 295 RW~~~~~~l~~~~ 307 (344)
T PF12777_consen 295 RWSEQIEELEEQL 307 (344)
T ss_dssp CCHCHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 4665555554443
No 413
>PLN02678 seryl-tRNA synthetase
Probab=25.35 E-value=5.6e+02 Score=29.00 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhHhHhhhhhhhh
Q 008232 526 IKELQQCLARIQQDQKETEVRLIC 549 (573)
Q Consensus 526 l~~l~qel~qak~~q~q~E~~~~~ 549 (573)
+.+|.+++...+...+++|.++.-
T Consensus 80 ~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 80 TKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 414
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=25.35 E-value=5.6e+02 Score=25.83 Aligned_cols=39 Identities=28% Similarity=0.326 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 494 VAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQC 532 (573)
Q Consensus 494 ~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qe 532 (573)
+-++=+..+.+-.--|.--..|..||...|++..+++++
T Consensus 180 Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 180 LEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444444444455555555555555555555554443
No 415
>PLN02939 transferase, transferring glycosyl groups
Probab=25.27 E-value=7.8e+02 Score=30.79 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=40.9
Q ss_pred HhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 008232 466 LETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQK 541 (573)
Q Consensus 466 LE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~ 541 (573)
|..||-.|+.-+++-|-.-.+- +++=+++-.-||++++|+.-|.+...|+...|..+.+..-+|-
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (977)
T PLN02939 231 LKEENMLLKDDIQFLKAELIEV-----------AETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQY 295 (977)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH-----------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhH
Confidence 3446666666666555333221 2233466777889999988888888887777776666555443
No 416
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=25.16 E-value=1.2e+02 Score=26.98 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=33.2
Q ss_pred HHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhh
Q 008232 448 ALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAES 487 (573)
Q Consensus 448 Al~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES 487 (573)
-+.+-+.||...++.|..++.+...+|..-++||-.|...
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RA 64 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRA 64 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888899999999999999999999877654
No 417
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.08 E-value=4.5e+02 Score=31.14 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=50.3
Q ss_pred hhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhh
Q 008232 408 SNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAE 486 (573)
Q Consensus 408 ~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~E 486 (573)
+++..|+.-.|+=++++|.+- .=....|+...+|.++++-...||+ |+.|..+|.+=|=.+|-.+-|
T Consensus 425 sk~~le~~~v~~~~~~VQe~~-----~Y~g~ekk~n~LE~e~kn~~~ev~k-------ls~ei~~ie~~l~~~~~~vke 491 (758)
T COG4694 425 SKEQLEKFLVNEFKSDVQEYN-----KYCGLEKKINNLEKEIKNNQEEVKK-------LSNEIKEIEKFLVSIKPIVKE 491 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHhhHHHHHH-------HHHHHHHHHHHHhhchhhHHH
Confidence 888999999999999888873 2234558888888888887755554 888888888888555554443
No 418
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=24.94 E-value=2.4e+02 Score=31.10 Aligned_cols=52 Identities=19% Similarity=0.386 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhcHHHHHHHHhhHHHHHHh
Q 008232 376 VTMLHQIKDLERQVKERKEWAHQKAM----QAARKLSNDLTELKMLRMEREETQRL 427 (573)
Q Consensus 376 l~Lv~rv~eLq~qlkewtdWA~qKvm----Qaa~rL~kd~~ELk~LR~Ekee~~rl 427 (573)
-.+..|..+|+.++.+-.=|.+++-. +.-..|..-...++.|+...++++.+
T Consensus 26 ~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~ 81 (367)
T PRK00578 26 DALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEEL 81 (367)
T ss_pred HHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888877777666443 33333333333444444444444333
No 419
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=24.73 E-value=4.3e+02 Score=25.49 Aligned_cols=45 Identities=13% Similarity=0.348 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhh---hhHHHHHHHHHhhhhh
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLET---ENAEIRAEMEASKLSA 484 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~---ena~lr~EmEAaKL~A 484 (573)
.++.+.+.++....+||.-+|..+..|.. .|.+|+++.+.-+-..
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777776 6666666665544333
No 420
>KOG1574 consensus Predicted cell growth/differentiation regulator, contains RA domain [Extracellular structures]
Probab=24.70 E-value=1e+03 Score=26.66 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=21.4
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHH
Q 008232 365 TITDDQKDEIVVTMLHQIKDLERQVKE 391 (573)
Q Consensus 365 ~vp~D~KdEmil~Lv~rv~eLq~qlke 391 (573)
.++--.+|-.|.-.|.|++||..|+..
T Consensus 147 ~~~~~~~e~~~~Q~v~~~~e~~~qi~~ 173 (375)
T KOG1574|consen 147 VILGASQETTIQQQVMRIKELDLQIEK 173 (375)
T ss_pred eeecccchhHHHHHHHHHHHHhhhhHH
Confidence 344456778888899999999999887
No 421
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.59 E-value=9.4e+02 Score=26.24 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHH
Q 008232 374 IVVTMLHQIKDLERQVKERK-EWA 396 (573)
Q Consensus 374 mil~Lv~rv~eLq~qlkewt-dWA 396 (573)
|+=.|-.|-+.|++...++. .|+
T Consensus 31 MAEqLqer~q~LKkk~~el~~~~~ 54 (319)
T PF09789_consen 31 MAEQLQERYQALKKKYRELIQEAA 54 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhc
Confidence 44445555556666666655 444
No 422
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=24.58 E-value=4.2e+02 Score=31.06 Aligned_cols=91 Identities=26% Similarity=0.276 Sum_probs=65.3
Q ss_pred HHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 008232 424 TQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLK 503 (573)
Q Consensus 424 ~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lk 503 (573)
.++|.+|-+.||-.+...|.+-|.....-..++|.|.+.+-++|...+....++..-+ .
T Consensus 7 ~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~---------------------~ 65 (701)
T PF09763_consen 7 EERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVR---------------------D 65 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------H
Confidence 3577778888999999999999999999999999999999999998888777766522 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLAR 535 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~qel~q 535 (573)
.+...|.|-..||=+.+..|.=+.+|+.=|.+
T Consensus 66 di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~ 97 (701)
T PF09763_consen 66 DIEYIESQNNGLQVQSANQKLLLNELENLLDT 97 (701)
T ss_pred HHHHHHhhcCchhhHHHHHHHHHHHHHHHHHh
Confidence 44455566666655555555444444443333
No 423
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.52 E-value=3.2e+02 Score=28.30 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhh
Q 008232 506 LAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 506 ~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~ 547 (573)
.-+-.|-.-||.||...+-.|-+++.+|.|++++|+++-..+
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999865443
No 424
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=24.44 E-value=4.8e+02 Score=28.76 Aligned_cols=31 Identities=13% Similarity=0.242 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 373 EIVVTMLHQIKDLERQVKERKEWAHQKAMQA 403 (573)
Q Consensus 373 Emil~Lv~rv~eLq~qlkewtdWA~qKvmQa 403 (573)
+.+-.+..++.+|++++..-.=|-+++-.|.
T Consensus 6 ~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~ 36 (359)
T PRK00591 6 DKLEALEERYEELEALLSDPEVISDQKRFRK 36 (359)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccCHHHHHH
Confidence 3455667788999999988888866644333
No 425
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=24.42 E-value=2.1e+02 Score=31.39 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhHhHhhhhh
Q 008232 523 KEKIKELQQCLARIQQDQKETEVR 546 (573)
Q Consensus 523 K~Kl~~l~qel~qak~~q~q~E~~ 546 (573)
+.|+.+++++++...+.+++++.-
T Consensus 272 ~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 272 KNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666643
No 426
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.41 E-value=8.1e+02 Score=26.41 Aligned_cols=83 Identities=24% Similarity=0.423 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcHH----HHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhh
Q 008232 382 IKDLERQVKERKEWAHQKAMQAARKLSNDLT----ELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVD 457 (573)
Q Consensus 382 v~eLq~qlkewtdWA~qKvmQaa~rL~kd~~----ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~Qld 457 (573)
++||..+|.|--| --.|||..---|=+|++ +...|+.+.||.+.. |.++...++...++++
T Consensus 79 ~r~lk~~l~evEe-kyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~--------------~~~~~re~~eK~~elE 143 (302)
T PF09738_consen 79 LRDLKDSLAEVEE-KYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEET--------------LAQLQREYREKIRELE 143 (302)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHhhhhHHHHHHHHH
Q 008232 458 RANAAVRRLETENAEIRAEMEA 479 (573)
Q Consensus 458 rAna~vrrLE~ena~lr~EmEA 479 (573)
|-.-....|..|.++||.++..
T Consensus 144 r~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 144 RQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 427
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=24.39 E-value=1.7e+02 Score=31.28 Aligned_cols=18 Identities=6% Similarity=0.217 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008232 377 TMLHQIKDLERQVKERKE 394 (573)
Q Consensus 377 ~Lv~rv~eLq~qlkewtd 394 (573)
.|-.+..++..+++...+
T Consensus 3 el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 3 ELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 455556666666665555
No 428
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=24.37 E-value=1.8e+02 Score=26.66 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 383 KDLERQVKERKEWAHQKAMQAARKL 407 (573)
Q Consensus 383 ~eLq~qlkewtdWA~qKvmQaa~rL 407 (573)
.|++.++..|-+|.++++.-...+.
T Consensus 2 ~~~~a~i~~~~~~~~~~~~~~~~~~ 26 (142)
T cd03190 2 EELRSEIDELNEWIYDNINNGVYKA 26 (142)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4789999999999999999886553
No 429
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=24.24 E-value=1.2e+03 Score=27.51 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhHhHhhhhhhh
Q 008232 523 KEKIKELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 523 K~Kl~~l~qel~qak~~q~q~E~~~~ 548 (573)
+++|..+|+-+..-+.+..++....+
T Consensus 516 ~sel~sl~~~~~~~~~r~~~~~~~l~ 541 (607)
T KOG0240|consen 516 KSELQSLQEPSEHQSKRITELLSELR 541 (607)
T ss_pred HHHHHhhhhcccchhHHHHHHHHHHH
Confidence 44455555555555555555554443
No 430
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.21 E-value=1.7e+02 Score=26.40 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=25.3
Q ss_pred HHhhHHHHHHHHHhh--hhhhhhhhHHHHHHhhhhHHHHHHH
Q 008232 438 TMKRLSEMENALRKA--SGQVDRANAAVRRLETENAEIRAEM 477 (573)
Q Consensus 438 T~KrLsEmEnAl~ka--s~QldrAna~vrrLE~ena~lr~Em 477 (573)
.-.||+.+|..++.. ..++-+=+-.+-+++++...+++++
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 568899999999887 5555544445555555554444444
No 431
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.05 E-value=1.2e+02 Score=30.40 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=29.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 370 QKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQ 402 (573)
Q Consensus 370 ~KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQ 402 (573)
-.||+|.++|.+.++|+.+|++-+.|+-+-+-.
T Consensus 21 l~De~V~~~~~~a~~l~~~l~~fK~~~f~d~~a 53 (195)
T PF11363_consen 21 LRDELVREIVGKAKELSEQLAEFKAHTFEDIEA 53 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999998776543
No 432
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=24.03 E-value=52 Score=29.56 Aligned_cols=12 Identities=67% Similarity=1.354 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHH
Q 008232 499 KKCLKRLLAWEK 510 (573)
Q Consensus 499 kk~lkkl~~WEk 510 (573)
++||+||+.||+
T Consensus 24 ~~ClerLk~We~ 35 (95)
T PF13496_consen 24 QKCLERLKQWEK 35 (95)
T ss_pred HHHHHHHHHHHh
Confidence 578999999996
No 433
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.01 E-value=8.8e+02 Score=26.46 Aligned_cols=74 Identities=23% Similarity=0.261 Sum_probs=46.0
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Q 008232 461 AAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCL---------------------KRLLAWEKQKAKLQEEI 519 (573)
Q Consensus 461 a~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~l---------------------kkl~~WEkQK~~LQEEl 519 (573)
-|++-|-.|...++.|++.=|+-|-+=..-|+.+.++-.... .-+.--..|.-.|++|+
T Consensus 9 eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev 88 (319)
T PF09789_consen 9 EALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEV 88 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 456667777788888888888885444445555544443332 11123345566777777
Q ss_pred HHHHHHHHHHHHHHH
Q 008232 520 ANEKEKIKELQQCLA 534 (573)
Q Consensus 520 a~eK~Kl~~l~qel~ 534 (573)
..-++||.++|-+..
T Consensus 89 ~~Lrqkl~E~qGD~K 103 (319)
T PF09789_consen 89 EELRQKLNEAQGDIK 103 (319)
T ss_pred HHHHHHHHHHhchHH
Confidence 777777777776633
No 434
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=23.82 E-value=8.1e+02 Score=25.23 Aligned_cols=157 Identities=21% Similarity=0.289 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH--------------HhhhcHHHHHHHHhhHHHHHHhhhhcccchhh
Q 008232 375 VVTMLHQIKDLERQVKERKE---WAHQKAMQAAR--------------KLSNDLTELKMLRMEREETQRLKKGKQTLEDT 437 (573)
Q Consensus 375 il~Lv~rv~eLq~qlkewtd---WA~qKvmQaa~--------------rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~ 437 (573)
|-.|=.|++-|+.++-.|-+ =|.||.-++++ |.-+|-.....+.+. ||.-||..|+.
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~q------LkEAk~iaE~a 79 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQ------LKEAKHIAEKA 79 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHHHHH
Confidence 34566777778877765544 46677766654 333333333333333 34444555544
Q ss_pred H------HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHH---Hhhhhhhhh----HHHHHHHHHHHHHHHH-
Q 008232 438 T------MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEME---ASKLSAAES----VTTCLEVAKREKKCLK- 503 (573)
Q Consensus 438 T------~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmE---AaKL~A~ES----~~sc~e~~kkekk~lk- 503 (573)
- .++|.=.|--|..|.--.+-+.+-..+|+-+..-+..... ++-=.+.+. .+-.-.+..|=|..=.
T Consensus 80 drK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~r 159 (205)
T KOG1003|consen 80 DRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETR 159 (205)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhh
Confidence 3 3455555555555555555666666666666555443322 111111111 1222223333333333
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 504 ------RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (573)
Q Consensus 504 ------kl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak 537 (573)
+.+..+++..-|++.+...|.|-..++++|-++=
T Consensus 160 AE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~ 199 (205)
T KOG1003|consen 160 AEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETL 199 (205)
T ss_pred HHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666677777777777776653
No 435
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=23.81 E-value=85 Score=26.99 Aligned_cols=19 Identities=26% Similarity=0.726 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008232 373 EIVVTMLHQIKDLERQVKE 391 (573)
Q Consensus 373 Emil~Lv~rv~eLq~qlke 391 (573)
.+|++|+.|+..|+.+++.
T Consensus 63 ~lil~LLd~i~~L~~el~~ 81 (84)
T PF13591_consen 63 ALILDLLDRIEQLRRELRE 81 (84)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999875
No 436
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.81 E-value=4.7e+02 Score=22.44 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhcc
Q 008232 501 CLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLICLF 551 (573)
Q Consensus 501 ~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~ 551 (573)
.+..+..-..+...|+++-..-++....|.++.++.++.++....|++-|.
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333377777777888888888887777653
No 437
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.68 E-value=1.1e+03 Score=26.49 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHH
Q 008232 373 EIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKML 417 (573)
Q Consensus 373 Emil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~L 417 (573)
+.+-.++..+...+.-+..+.. +-|+..++.+.|.+-+.-+..+
T Consensus 363 ~~l~~~i~~~~~~k~~~~~r~~-~~~~~~~~~~~~~~~~e~~~~~ 406 (503)
T KOG2273|consen 363 EQLREYIRYLESVKSLFEQRSK-ALQKLQEAQRELSSKKEQLSKL 406 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHH
Confidence 4555677777777888888888 8888888877766654444433
No 438
>PRK10865 protein disaggregation chaperone; Provisional
Probab=23.58 E-value=5.9e+02 Score=30.94 Aligned_cols=15 Identities=0% Similarity=0.231 Sum_probs=8.1
Q ss_pred CCCCCCchhHHHHHH
Q 008232 364 ETITDDQKDEIVVTM 378 (573)
Q Consensus 364 ~~vp~D~KdEmil~L 378 (573)
..|++-..++.+..|
T Consensus 336 i~v~eP~~~~~~~iL 350 (857)
T PRK10865 336 VFVAEPSVEDTIAIL 350 (857)
T ss_pred EEeCCCCHHHHHHHH
Confidence 456655556555533
No 439
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=23.48 E-value=9.7e+02 Score=26.00 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhH
Q 008232 516 QEEIANEKEKIKELQQCLARIQQDQK 541 (573)
Q Consensus 516 QEEla~eK~Kl~~l~qel~qak~~q~ 541 (573)
+++++.-+..+.+++.++++++....
T Consensus 226 ~~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 226 EKELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777778888777777666553
No 440
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=23.47 E-value=8.6e+02 Score=26.66 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=46.6
Q ss_pred HHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 008232 462 AVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQK 541 (573)
Q Consensus 462 ~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~ 541 (573)
..++|+..+...+.-.|.- .+.-+.|....++.++.|+.+..==+.... ..-..+++.+.+|++++..++..-.
T Consensus 12 efq~Lqethr~Y~qKleel----~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~--~~~~e~~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 12 EFQELQETHRSYKQKLEEL----SKLQDKCSSSISHQKKRLKELKKSLKRCKK--SLSAEERELIEKLEEDIKERRCQLF 85 (330)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHHHHHHhhHH
Confidence 3444555554444433321 445567777777777777665432221100 0122457788888888888888888
Q ss_pred hhhhh
Q 008232 542 ETEVR 546 (573)
Q Consensus 542 q~E~~ 546 (573)
++|+-
T Consensus 86 DmEa~ 90 (330)
T PF07851_consen 86 DMEAF 90 (330)
T ss_pred HHHhh
Confidence 88853
No 441
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=23.46 E-value=8.5e+02 Score=25.35 Aligned_cols=124 Identities=18% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHH---HHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHh
Q 008232 375 VVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELK---MLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRK 451 (573)
Q Consensus 375 il~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk---~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~k 451 (573)
+.++..++.+++..|..--.+.-++..+.-..+.+.+.... -.++=.+..++|..-++.|+-....+|...++.|.+
T Consensus 145 ~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L~~ 224 (319)
T PF02601_consen 145 RRELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQAIQQKLQRKRQRLQN 224 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 452 ASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQ 531 (573)
Q Consensus 452 as~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~q 531 (573)
.+.++.+.+-..+--.. + +....=+..++..+...+.++..+.+
T Consensus 225 l~~~l~~~~~~~~l~~~-----------------------------------~-~~~~~l~~~~~~~l~~~~~~l~~~~~ 268 (319)
T PF02601_consen 225 LSNRLKRQSPQQKLNQQ-----------------------------------R-QQLQRLQKRLQRKLSQKRQRLERLEA 268 (319)
T ss_pred HHHhhhhhhhhhHHHHH-----------------------------------H-HHhhhhhHHHhhhhHHHHHHHHHHHH
Q ss_pred HHH
Q 008232 532 CLA 534 (573)
Q Consensus 532 el~ 534 (573)
.|.
T Consensus 269 ~L~ 271 (319)
T PF02601_consen 269 RLE 271 (319)
T ss_pred HHH
No 442
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=23.39 E-value=6.2e+02 Score=23.74 Aligned_cols=90 Identities=18% Similarity=0.282 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhh
Q 008232 373 EIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKA 452 (573)
Q Consensus 373 Emil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~ka 452 (573)
.++..+-.-++++..-.++..+=.++.|+.-.+++.++..+++.+++.++ +++.+++.+..+.
T Consensus 92 ~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~-----------------~~~ldyd~~~~k~ 154 (229)
T PF03114_consen 92 NALEKFGEAMQEIEEARKELESQIESTVIDPLKEFLKEFKEIKKLIKKRE-----------------KKRLDYDSARSKL 154 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------------HHHHHHHHHHHHH
Confidence 44444444445554444455555678899999999999999988888887 3444555554444
Q ss_pred hhh---------hhhhhHHHHHHhhhhHHHHHHHHH
Q 008232 453 SGQ---------VDRANAAVRRLETENAEIRAEMEA 479 (573)
Q Consensus 453 s~Q---------ldrAna~vrrLE~ena~lr~EmEA 479 (573)
..- -+....+-..++..|..+..+|..
T Consensus 155 ~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~ 190 (229)
T PF03114_consen 155 EKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELPK 190 (229)
T ss_dssp HHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 122333445566666666666664
No 443
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=23.16 E-value=8.3e+02 Score=25.07 Aligned_cols=134 Identities=16% Similarity=0.276 Sum_probs=85.0
Q ss_pred HhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHH-----HHHHh
Q 008232 406 KLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRA-----EMEAS 480 (573)
Q Consensus 406 rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~-----EmEAa 480 (573)
-++.-..|+-+||-..-++ ..--+++-.++.++..+++..+-.++....-.+|.-.|.+.+|. |-|.+
T Consensus 25 E~~~K~~Eiv~Lr~ql~e~-------~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~ 97 (202)
T PF06818_consen 25 EVNQKDSEIVSLRAQLREL-------RAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELA 97 (202)
T ss_pred HHHHHHhHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHH
Confidence 4555556777777654422 23345666788889999999999999999999999999888887 45566
Q ss_pred hhhhhhhHH-----HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHh
Q 008232 481 KLSAAESVT-----TCLEVAKREKKC------LKRLLAWEKQKAKLQEEIANEKEKIKEL-----------QQCLARIQQ 538 (573)
Q Consensus 481 KL~A~ES~~-----sc~e~~kkekk~------lkkl~~WEkQK~~LQEEla~eK~Kl~~l-----------~qel~qak~ 538 (573)
.|....+.. .|.-+...+.-. -..+..-..|-.-|+.||..++++.-+- ++|-+++=.
T Consensus 98 ~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~ 177 (202)
T PF06818_consen 98 ELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIR 177 (202)
T ss_pred HHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655553 122222211111 1224445566677888888877766532 445555666
Q ss_pred HhHhhhhh
Q 008232 539 DQKETEVR 546 (573)
Q Consensus 539 ~q~q~E~~ 546 (573)
.|+|+..-
T Consensus 178 YQkQLQ~n 185 (202)
T PF06818_consen 178 YQKQLQQN 185 (202)
T ss_pred HHHHHHHH
Confidence 67776654
No 444
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=23.10 E-value=3.4e+02 Score=29.95 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 376 VTMLHQIKDLERQVKERKEWAHQKAMQA 403 (573)
Q Consensus 376 l~Lv~rv~eLq~qlkewtdWA~qKvmQa 403 (573)
-.+..|..+|+.+|..-.=|...+-+|.
T Consensus 26 ~~~~~~~~~le~~~~~p~~w~d~~~~~~ 53 (364)
T TIGR00020 26 EKKKARLEELEKEMEDPNFWNDQERAQA 53 (364)
T ss_pred HHHHHHHHHHHHHhcCCccccCHHHHHH
Confidence 3566788888888888887877655443
No 445
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=23.10 E-value=4.8e+02 Score=22.34 Aligned_cols=61 Identities=18% Similarity=0.313 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 468 TENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAW----------EKQKAKLQEEIANEKEKIKELQQCLAR 535 (573)
Q Consensus 468 ~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~W----------EkQK~~LQEEla~eK~Kl~~l~qel~q 535 (573)
..+.++|..+. +....|.++.+.-...++++..| .-+..+|..|+...-.....+|+....
T Consensus 26 ~Ds~~lR~~i~-------~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~ 96 (102)
T PF14523_consen 26 RDSQELREKIH-------QLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRYAE 96 (102)
T ss_dssp S--HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666663 67788999999999999999999 244556666666555555555555443
No 446
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=23.09 E-value=9.9e+02 Score=25.97 Aligned_cols=129 Identities=24% Similarity=0.236 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhh--------hh
Q 008232 388 QVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVD--------RA 459 (573)
Q Consensus 388 qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~Qld--------rA 459 (573)
..++-|.=|.++|=+..-.|-+-+=|-.-|.+|..--..++-.-+.+| -+++-|+ +..|-..++ -=
T Consensus 16 ~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~-----Lv~~eEF-~~~ap~~~~~~~~~~~~~H 89 (355)
T PF09766_consen 16 KAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIE-----LVPVEEF-YAKAPEEISDPELTEDDEH 89 (355)
T ss_pred HHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCc-----CccHHHH-HHhChhhccccccCCCChH
Confidence 344445555566666655666666666666666554444433222111 1222232 334444432 22
Q ss_pred hHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008232 460 NAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQD 539 (573)
Q Consensus 460 na~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~ 539 (573)
+-...||+-|..+ |++ ..++++.++++|.+|+.|++.-|..|..|...|....+.
T Consensus 90 ~lml~RL~~EL~~-Rk~------------------------L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a 144 (355)
T PF09766_consen 90 QLMLARLEFELEQ-RKR------------------------LEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKA 144 (355)
T ss_pred HHHHHHHHHHHHH-HHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2245666665544 333 345778899999999999999999999999999988877
Q ss_pred hHhhhhhh
Q 008232 540 QKETEVRL 547 (573)
Q Consensus 540 q~q~E~~~ 547 (573)
-+-++...
T Consensus 145 ~~plq~~l 152 (355)
T PF09766_consen 145 AKPLQEYL 152 (355)
T ss_pred HHHHHHHh
Confidence 77666544
No 447
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.05 E-value=1.4e+03 Score=27.67 Aligned_cols=151 Identities=15% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhH
Q 008232 377 TMLHQIKDLERQVKERKEWAHQKAMQAA--------------RKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRL 442 (573)
Q Consensus 377 ~Lv~rv~eLq~qlkewtdWA~qKvmQaa--------------~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrL 442 (573)
++..++..+|..+++.-+=-+.+.--.. +-+.+.++|+..||.--+ -++
T Consensus 105 ~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~d-----------------ss~ 167 (716)
T KOG4593|consen 105 KLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLD-----------------SSL 167 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHH
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHH------HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 443 SEMENALRKASGQVDRANAAVRRLETENAEIRAEME------ASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQ 516 (573)
Q Consensus 443 sEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmE------AaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQ 516 (573)
++.++...=-.-.+.+-++.+.+++-+..-.++..+ ++++.+-++...|...-.--...+-...--+.++...+
T Consensus 168 s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~ 247 (716)
T KOG4593|consen 168 SELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMK 247 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHH
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 517 E---EIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 517 E---Ela~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
+ |+.....++.+.-.+++..++.+.-+.
T Consensus 248 dqlqel~~l~~a~~q~~ee~~~~re~~~tv~ 278 (716)
T KOG4593|consen 248 DQLQELEELERALSQLREELATLRENRETVG 278 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
No 448
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=22.89 E-value=5.7e+02 Score=23.08 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=34.4
Q ss_pred hhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 008232 456 VDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLK 503 (573)
Q Consensus 456 ldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lk 503 (573)
+.+.....+.++-+...++.+-=..|..-.|-++.++++.++.+....
T Consensus 5 ~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~ 52 (106)
T PF05837_consen 5 ILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE 52 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 444556666777777777777777788888888888887777665544
No 449
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=22.88 E-value=8e+02 Score=24.78 Aligned_cols=124 Identities=19% Similarity=0.284 Sum_probs=68.7
Q ss_pred cHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhh-H
Q 008232 410 DLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAES-V 488 (573)
Q Consensus 410 d~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES-~ 488 (573)
++++|..|++..++ .+......-++=+.+.|.-++...+.++.+-..+..=-.+..+-++|.-..++++.=. .
T Consensus 47 ~rA~LNKl~k~id~------~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~~k~~~i~~~~~~~ 120 (215)
T PF07083_consen 47 DRAELNKLKKAIDD------KRKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKEEKREKIKEYFEEM 120 (215)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556555555542 1223344455667777887777777777776666555555555555555555444311 1
Q ss_pred HHHHH----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhh
Q 008232 489 TTCLE----VAK--REKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVR 546 (573)
Q Consensus 489 ~sc~e----~~k--kekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~ 546 (573)
..... -.. ...+.+.+..+|-+ ..+||.+ .+..+.+++++.+..+..++..
T Consensus 121 ~~~~~v~~~~fe~~~~~~wlnks~s~kk----~~eei~~---~i~~~~~~~~~~~~~~~~i~~~ 177 (215)
T PF07083_consen 121 AEEYGVDPEPFERIIKPKWLNKSYSLKK----IEEEIDD---QIDKIKQDLEEIKAAKQAIEEK 177 (215)
T ss_pred HHHcCCChHHHhhhcchHHhhcCCcHHH----HHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 111 33555556555544 6777776 5666666777766666666654
No 450
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=22.73 E-value=9e+02 Score=27.03 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 008232 503 KRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQK 541 (573)
Q Consensus 503 kkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~ 541 (573)
++++.||.+ |++|+..-++||.+.+.++...+.+..
T Consensus 331 ~~l~~~E~~---l~~e~~~~n~~Le~~~~~l~~~e~~l~ 366 (373)
T COG5019 331 KRLEELEQN---LIEERKELNSKLEEIQKKLEDLEKRLE 366 (373)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778764 677888888888888877776655443
No 451
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=22.57 E-value=7.6e+02 Score=24.45 Aligned_cols=93 Identities=20% Similarity=0.302 Sum_probs=0.0
Q ss_pred HhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 008232 418 RMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKR 497 (573)
Q Consensus 418 R~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kk 497 (573)
|+..|--++...-.-.+||.| |||++.--+|. ..+-=..-|.+-+|+-.+.+...=-=-..+|+..-+-
T Consensus 45 rkKmeVrekVq~~LgrveEet-krLa~ireeLE----------~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkE 113 (159)
T PF04949_consen 45 RKKMEVREKVQAQLGRVEEET-KRLAEIREELE----------VLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKE 113 (159)
T ss_pred HHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHH----------hhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 498 EKKCLKRLLAWEKQKAKLQEEIAN 521 (573)
Q Consensus 498 ekk~lkkl~~WEkQK~~LQEEla~ 521 (573)
=+.+|+-+--=.++|+.|=..|.+
T Consensus 114 ykealea~nEknkeK~~Lv~~L~e 137 (159)
T PF04949_consen 114 YKEALEAFNEKNKEKAQLVTRLME 137 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 452
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=22.54 E-value=8.9e+02 Score=27.63 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhh
Q 008232 495 AKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 495 ~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~ 548 (573)
.|++...-+..+-|..+....-++|..+.+.- --.+|..-.|.|.+.-|.
T Consensus 218 ~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~----Sle~q~~~s~~qldkL~k 267 (447)
T KOG2751|consen 218 FKAERLNEEEDQYWREYNNFQRQLIEHQDELD----SLEAQIEYSQAQLDKLRK 267 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchHH----HHHHHHHHHHHHHHHHHh
Confidence 45666777778888887777766666665432 222333344444444444
No 453
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=22.49 E-value=1.6e+02 Score=26.21 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 513 AKLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 513 ~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
..|++|+..-+.||.+.+..+.+.++++++++
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777776
No 454
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=22.35 E-value=5e+02 Score=25.44 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhh
Q 008232 442 LSEMENALRKAS 453 (573)
Q Consensus 442 LsEmEnAl~kas 453 (573)
+.+|...|.++.
T Consensus 65 ~~~Lk~~lk~~k 76 (168)
T PF06102_consen 65 IKELKKQLKKTK 76 (168)
T ss_pred HHHHHHHHHHcC
Confidence 444455555554
No 455
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=22.19 E-value=2.5e+02 Score=23.52 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 442 LsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
|+.+-.+--.+..+|.-|..--+.|+.++..|+.|||-.+
T Consensus 20 L~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 20 LTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555566777788888888999999999999998754
No 456
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=22.15 E-value=3.2e+02 Score=28.72 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=16.8
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhhhhh
Q 008232 461 AAVRRLETENAEIRAEMEASKLSAAE 486 (573)
Q Consensus 461 a~vrrLE~ena~lr~EmEAaKL~A~E 486 (573)
+.+..||.+.++-++++++-...-..
T Consensus 194 ~~i~~lE~~VaeQ~~qL~~~n~~~~~ 219 (259)
T PF08657_consen 194 NSIAYLEAEVAEQEAQLERMNRSSSD 219 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 55667777777777777766554443
No 457
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=21.89 E-value=1.2e+03 Score=28.28 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=11.5
Q ss_pred HHHHHHhHhHhhhhhhhhcc
Q 008232 532 CLARIQQDQKETEVRLICLF 551 (573)
Q Consensus 532 el~qak~~q~q~E~~~~~~~ 551 (573)
+++.+.+..+-.++-+--+|
T Consensus 360 e~ea~E~rkkr~~aei~Kff 379 (811)
T KOG4364|consen 360 EVEAQELRKKRHEAEIGKFF 379 (811)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 55555556666666555555
No 458
>smart00721 BAR BAR domain.
Probab=21.87 E-value=7.4e+02 Score=24.00 Aligned_cols=60 Identities=23% Similarity=0.406 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHhHhhhhhh
Q 008232 488 VTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANE----KEKIKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 488 ~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~e----K~Kl~~l~qel~qak~~q~q~E~~~ 547 (573)
...+-++.+.-+|--++++-+..-+.+|+.=-... .+|+.++.+++..|++.=+++-.-+
T Consensus 130 ~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~~l 193 (239)
T smart00721 130 LGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQL 193 (239)
T ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 35566777888888888888888887765332211 1267777777777766554443333
No 459
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=21.82 E-value=5.8e+02 Score=26.71 Aligned_cols=34 Identities=35% Similarity=0.445 Sum_probs=25.0
Q ss_pred HhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhh
Q 008232 418 RMEREETQRLKKGKQTLEDTTMKRLSEMENALRKA 452 (573)
Q Consensus 418 R~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~ka 452 (573)
.|..|+.+.+.| ...++++.+|+|.--|.+=++|
T Consensus 112 ~K~~e~~~ql~k-e~a~~~~nrk~~~~~E~~nrka 145 (233)
T KOG4739|consen 112 KKTQEETQQLSK-EEAFIENNRKKLQASELENRKA 145 (233)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777 5677888888888777776665
No 460
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=21.79 E-value=1.2e+03 Score=26.56 Aligned_cols=117 Identities=23% Similarity=0.211 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHH
Q 008232 370 QKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAA------RKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLS 443 (573)
Q Consensus 370 ~KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa------~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLs 443 (573)
+|-+.=-+|+.-=.+|+-+-|---.|--|+|.|.| -++..--.||..| +||+.+|..|.-. |+-|.|+|+
T Consensus 7 ~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~L---q~e~~~l~e~~v~-~~a~~~~~t 82 (459)
T KOG0288|consen 7 QKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRL---QEENTQLNEERVR-EEATEKTLT 82 (459)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHH
Q ss_pred HHHHHHHh--hhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHH
Q 008232 444 EMENALRK--ASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTT 490 (573)
Q Consensus 444 EmEnAl~k--as~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~s 490 (573)
+-+.-+++ +-.+.+--.+.+|+.|.+|+++--+=+-.|.+-.|-.+.
T Consensus 83 ~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~ 131 (459)
T KOG0288|consen 83 VDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAERLAE 131 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
No 461
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=21.74 E-value=9.1e+02 Score=25.02 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCL 533 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~qel 533 (573)
+-....||-..+|.|...-.++-..||.++
T Consensus 180 ~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 180 KVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 334566777777777766655555555544
No 462
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.72 E-value=2.8e+02 Score=28.79 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHH-----------HH-HHHHHHHHHHHHHHhHhHhhhhhhhhccccc
Q 008232 504 RLLAWEKQKAKLQEEIAN-----------EK-EKIKELQQCLARIQQDQKETEVRLICLFPWF 554 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~-----------eK-~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~ 554 (573)
-|...|.|-..|-+||.. || .+|.++++.|+.|++...|||--.+.+-|-|
T Consensus 4 ~fe~yEqqy~~l~a~it~k~~~~~~~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~ 66 (220)
T KOG1666|consen 4 LFEGYEQQYRELSAEITKKIGRALSLPGSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNF 66 (220)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchh
Confidence 367789999999999874 44 4899999999999999999999988888766
No 463
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=21.71 E-value=1.5e+02 Score=31.17 Aligned_cols=17 Identities=41% Similarity=0.524 Sum_probs=10.4
Q ss_pred HHHHHhhhhHHHHHHHH
Q 008232 462 AVRRLETENAEIRAEME 478 (573)
Q Consensus 462 ~vrrLE~ena~lr~EmE 478 (573)
..+.|..||.+||+|..
T Consensus 67 ~~~~l~~EN~~Lr~e~~ 83 (283)
T TIGR00219 67 DVNNLEYENYKLRQELL 83 (283)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556667777766644
No 464
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=21.69 E-value=1.4e+02 Score=28.78 Aligned_cols=44 Identities=20% Similarity=0.186 Sum_probs=26.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHH---------------HHHHhHhHhhhhhhhhccccccc
Q 008232 513 AKLQEEIANEK-EKIKELQQCL---------------ARIQQDQKETEVRLICLFPWFST 556 (573)
Q Consensus 513 ~~LQEEla~eK-~Kl~~l~qel---------------~qak~~q~q~E~~~~~~~~~~~~ 556 (573)
.+||+||...+ .+.-++-+++ ..+++.|.++|+|++.|---+..
T Consensus 11 ~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~ 70 (156)
T TIGR01461 11 EKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLEN 70 (156)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666654 2443333333 34677888888888887644433
No 465
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=21.68 E-value=4.3e+02 Score=28.51 Aligned_cols=76 Identities=22% Similarity=0.419 Sum_probs=50.1
Q ss_pred CCCchhHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHH
Q 008232 367 TDDQKDEIVVTMLHQIKDLER-QVKER-KEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSE 444 (573)
Q Consensus 367 p~D~KdEmil~Lv~rv~eLq~-qlkew-tdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsE 444 (573)
-.-.+++.+|..+.--+|+-- ++.+- +|||+- .--++++++|+.+.-++.||.+.|--| +++
T Consensus 189 v~s~k~eF~L~ELESFKEinTtwfNgmksEWA~V-----~~AwkneLsEINSI~~gvEeLkKLAqE-----------Iss 252 (353)
T PF01540_consen 189 VQSTKEEFVLNELESFKEINTTWFNGMKSEWARV-----QEAWKNELSEINSIIKGVEELKKLAQE-----------ISS 252 (353)
T ss_pred hccchhhhhHHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Confidence 345678888888888887642 33344 888863 234899999999998888877766433 334
Q ss_pred HHHHHHhhhhhhhh
Q 008232 445 MENALRKASGQVDR 458 (573)
Q Consensus 445 mEnAl~kas~Qldr 458 (573)
.=|.+++|+..||+
T Consensus 253 ~Sn~lk~TIseLEK 266 (353)
T PF01540_consen 253 HSNKLKATISELEK 266 (353)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555544
No 466
>PRK11281 hypothetical protein; Provisional
Probab=21.43 E-value=1.7e+03 Score=28.23 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 510 KQKAKLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 510 kQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
.....|=++|-..-+++..+.++-.++++.-+++.
T Consensus 285 ~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~ 319 (1113)
T PRK11281 285 EINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLT 319 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777766666555443
No 467
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.34 E-value=6.7e+02 Score=26.80 Aligned_cols=72 Identities=26% Similarity=0.327 Sum_probs=36.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhHhhh--hhhhhcc
Q 008232 480 SKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKE-LQQCLARIQQDQKETE--VRLICLF 551 (573)
Q Consensus 480 aKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~-l~qel~qak~~q~q~E--~~~~~~~ 551 (573)
+||.|-|--..-.|+-..+...-|+.++.+--.-|-+||-..+-.++.. -...+++-.+.++++| -+|+.-|
T Consensus 109 aKleakqerr~qRe~E~~eREeRk~ke~~eE~erKkdEeR~~eEae~k~ee~~RkakEE~arkeheEylkmKaaF 183 (299)
T KOG3054|consen 109 AKLEAKQERRAQREAEEAEREERKRKEDYEEAERKKDEERLAEEAELKEEEKERKAKEEEARKEHEEYLKMKAAF 183 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 3444444444444444455555666666555555556664444444442 2233344444555666 4666655
No 468
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=21.30 E-value=60 Score=29.36 Aligned_cols=44 Identities=30% Similarity=0.444 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhccc
Q 008232 508 WEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLICLFP 552 (573)
Q Consensus 508 WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~~ 552 (573)
=+.|...|++|++..+.++.++.+-.++..+.+.+++ .+.-.+|
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~-~~~~~lP 47 (144)
T PF04350_consen 4 LQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLE-ELLKKLP 47 (144)
T ss_dssp --------HHHHHHTGGG-SSHHHHHHHHHHHHHHHH-HHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHhCC
Confidence 3567778888888888877777766666666666664 4444454
No 469
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=21.27 E-value=5.1e+02 Score=28.69 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=18.3
Q ss_pred HHHhHhcccccccCc-hhhhHHHHhHH
Q 008232 105 ALKAILKNGHCYGGM-DVLTNILHNSL 130 (573)
Q Consensus 105 A~raLL~AG~CYGpl-DPVSNII~NTI 130 (573)
....|...|+.||.. +.+..++....
T Consensus 30 i~~~L~~~gi~~Gi~~~~i~~~~~~~~ 56 (451)
T PF03961_consen 30 ILEALRKKGIVYGIDEEAIDKAIESPK 56 (451)
T ss_pred HHHHHHHCCCCcccCHHHHHHHHhccc
Confidence 356777889999998 44666665544
No 470
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=21.19 E-value=8.4e+02 Score=24.43 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 008232 518 EIANEKEKIKELQQCL 533 (573)
Q Consensus 518 Ela~eK~Kl~~l~qel 533 (573)
||..-+..+..+.+++
T Consensus 160 ei~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 160 EISRLKSEAEALKEEI 175 (190)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 471
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=20.87 E-value=3.6e+02 Score=29.24 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=55.0
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 455 QVDRANAAVRRLETENAEIRAEMEASKLSAAESV---TTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQ 531 (573)
Q Consensus 455 QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~---~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~q 531 (573)
|.|-......-...++.-+-.|||+-|=+..|.- .-+....+..-+.++-+...=++..-|++=|.++=+||..++.
T Consensus 209 ~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~qkL~~l~~ 288 (307)
T PF15112_consen 209 QRDGCESETDVYLSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEELQKLDSLQT 288 (307)
T ss_pred ccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 4444444333334444555556666554444441 1111122223455555666666777777777777799999999
Q ss_pred HHHHHHhHhHhhhhh
Q 008232 532 CLARIQQDQKETEVR 546 (573)
Q Consensus 532 el~qak~~q~q~E~~ 546 (573)
++.+.....++++.+
T Consensus 289 k~~~~~~~v~~~~~~ 303 (307)
T PF15112_consen 289 KHQKLESDVKELKSQ 303 (307)
T ss_pred HhcchhhhhhHHHhh
Confidence 999998888887765
No 472
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=20.73 E-value=7.6e+02 Score=23.73 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=23.3
Q ss_pred HhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhh
Q 008232 450 RKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAE 486 (573)
Q Consensus 450 ~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~E 486 (573)
+.++.++++++..+...-..|+....+++.....+.+
T Consensus 22 ~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~ 58 (135)
T TIGR03495 22 RNARADLERANRVLKAQQAELASKANQLIVLLALAKR 58 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5566667777777766666666666666655544433
No 473
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=20.72 E-value=1.7e+02 Score=24.46 Aligned_cols=32 Identities=13% Similarity=0.346 Sum_probs=25.4
Q ss_pred HHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHH
Q 008232 447 NALRKASGQVDRANAAVRRLETENAEIRAEME 478 (573)
Q Consensus 447 nAl~kas~QldrAna~vrrLE~ena~lr~EmE 478 (573)
..++....|+.+.+.....++.||.+|+.|..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888889998888776
No 474
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=20.57 E-value=1.8e+03 Score=28.10 Aligned_cols=31 Identities=3% Similarity=0.172 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHh
Q 008232 512 KAKLQEEIANEKEKIKELQQCLARIQQDQKE 542 (573)
Q Consensus 512 K~~LQEEla~eK~Kl~~l~qel~qak~~q~q 542 (573)
...|=++|...-+++..+.++-.++++.-++
T Consensus 267 N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~ 297 (1109)
T PRK10929 267 NRELSQALNQQAQRMDLIASQQRQAASQTLQ 297 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444333
No 475
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=20.39 E-value=8.4e+02 Score=27.12 Aligned_cols=41 Identities=24% Similarity=0.260 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 495 AKREKKCLKRLLAWEKQ------KAKLQEEIANEKEKIKELQQCLAR 535 (573)
Q Consensus 495 ~kkekk~lkkl~~WEkQ------K~~LQEEla~eK~Kl~~l~qel~q 535 (573)
.++-++.+..++.+-.+ +.+.++||...+.++..|.++|..
T Consensus 55 ~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~le~~L~~ 101 (363)
T COG0216 55 YKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKI 101 (363)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443 367888888888888888888764
No 476
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.32 E-value=5.9e+02 Score=22.31 Aligned_cols=68 Identities=24% Similarity=0.374 Sum_probs=44.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhHhHhhhhhhhhcc
Q 008232 484 AAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKE----------KIKELQQCLARIQQDQKETEVRLICLF 551 (573)
Q Consensus 484 A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~----------Kl~~l~qel~qak~~q~q~E~~~~~~~ 551 (573)
....+....++-.+-++....+.....++..+..+|+.-+. .+..+.+++...+...+++|..+.-+.
T Consensus 24 ~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 24 DEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666677777777777777777777766665544 555666666666666666666666554
No 477
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=20.32 E-value=1.6e+02 Score=25.93 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008232 515 LQEEIANEKEKIKELQQCLAR 535 (573)
Q Consensus 515 LQEEla~eK~Kl~~l~qel~q 535 (573)
+..||..||..|..|+|++.+
T Consensus 31 ~e~eLerCK~sirrLeqevnk 51 (79)
T PF09036_consen 31 IEQELERCKASIRRLEQEVNK 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777765
No 478
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=20.27 E-value=6.3e+02 Score=22.65 Aligned_cols=19 Identities=16% Similarity=0.337 Sum_probs=8.1
Q ss_pred HHHHhhhhHHHHHHHHHhh
Q 008232 463 VRRLETENAEIRAEMEASK 481 (573)
Q Consensus 463 vrrLE~ena~lr~EmEAaK 481 (573)
+..|...+...+.++..++
T Consensus 70 ~~~l~~~i~~q~~~l~~~~ 88 (141)
T TIGR02473 70 IRQLDQRIQQQQQELALLQ 88 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 479
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=20.27 E-value=1.4e+03 Score=29.18 Aligned_cols=143 Identities=20% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcHH----------HHHHHHhhHHHHH------------HhhhhcccchhhHHhhHHHHHHHHHhhhhhhh
Q 008232 400 AMQAARKLSNDLT----------ELKMLRMEREETQ------------RLKKGKQTLEDTTMKRLSEMENALRKASGQVD 457 (573)
Q Consensus 400 vmQaa~rL~kd~~----------ELk~LR~Ekee~~------------rlkKeKq~lEe~T~KrLsEmEnAl~kas~Qld 457 (573)
+.||-+.+..|+. .+...|++.+-.| +.++.-..|=.++-||+.++|++=-.-..++.
T Consensus 1048 AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ik 1127 (1439)
T PF12252_consen 1048 ALQALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIK 1127 (1439)
T ss_pred HHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHH
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH----HHHHHHHHHH
Q 008232 458 RANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKR------LLAWEKQKAKLQE----EIANEKEKIK 527 (573)
Q Consensus 458 rAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkk------l~~WEkQK~~LQE----Ela~eK~Kl~ 527 (573)
++=+-.-+|..|.-.||-|.-----..---.=|=.|.+++.-.-+.. +..--||-.-|+. -|.+-|++|+
T Consensus 1128 K~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~PKnltdvK~mis 1207 (1439)
T PF12252_consen 1128 KAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKPKNLTDVKSMIS 1207 (1439)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCCchhhHHHHHH
Q ss_pred HHHHHHHHHHhHhHh
Q 008232 528 ELQQCLARIQQDQKE 542 (573)
Q Consensus 528 ~l~qel~qak~~q~q 542 (573)
.+...|+-++.+.++
T Consensus 1208 sf~d~laeiE~LrnE 1222 (1439)
T PF12252_consen 1208 SFNDRLAEIEFLRNE 1222 (1439)
T ss_pred HHHhhhhHHHHHHHH
No 480
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=20.21 E-value=1.1e+02 Score=31.94 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=24.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 008232 508 WEKQKAKLQEE-IANEKEKIKELQQCLARI 536 (573)
Q Consensus 508 WEkQK~~LQEE-la~eK~Kl~~l~qel~qa 536 (573)
.=.|.+++||. |+.-+.+|.+|+++|+|.
T Consensus 45 ~laQ~vlvQE~AL~~a~~ri~eLe~ql~q~ 74 (247)
T PF09849_consen 45 YLAQTVLVQEQALKQAQARIQELEAQLQQA 74 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34699999987 788889999999999883
No 481
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=20.07 E-value=8.9e+02 Score=24.26 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHH-hhhhHHHHHHHHHhhhhhhhhHHHHHH
Q 008232 415 KMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRL-ETENAEIRAEMEASKLSAAESVTTCLE 493 (573)
Q Consensus 415 k~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrL-E~ena~lr~EmEAaKL~A~ES~~sc~e 493 (573)
+....+.++++..+.+-+.+.+...++|.+.. ..|..=++.|.....++ +.-.++.+.|.+.-+-+|-....+=.+
T Consensus 82 ~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~---~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~ 158 (205)
T PRK06231 82 ELIEAEINQANELKQQAQQLLENAKQRHENAL---AQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERR 158 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 494 VAKREKKCLKRLLAWEKQKAKLQEEIANEKEK 525 (573)
Q Consensus 494 ~~kkekk~lkkl~~WEkQK~~LQEEla~eK~K 525 (573)
-..++-+.----.+-+.=...|+++|..+.++
T Consensus 159 ~a~~~Lk~ei~~lAv~iA~kiL~k~ld~~~~~ 190 (205)
T PRK06231 159 ELKEQLQKESVELAMLAAEELIKKKVDREDDD 190 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH
No 482
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis]
Probab=20.02 E-value=7.8e+02 Score=27.62 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhcc
Q 008232 509 EKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLICLF 551 (573)
Q Consensus 509 EkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~ 551 (573)
|.=+.++-+|+...-.+|..+.++|++-.--.++..+. .|++
T Consensus 99 e~~~~~a~~E~~~~~~~i~~~~~~l~~~lLp~~~~D~~-~~ii 140 (386)
T KOG2726|consen 99 EDMDELAEEEAEEISKEIERSLHELELSLLPSDPYDAE-ACII 140 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc-CeEE
Confidence 44467788888888888999999988877766666655 5543
Done!