Query 008232
Match_columns 573
No_of_seqs 119 out of 145
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 21:18:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.2 0.14 4.7E-06 47.2 23.0 10 411-420 47-56 (284)
2 4gkw_A Spindle assembly abnorm 97.1 0.012 4E-07 54.3 14.2 135 369-511 7-162 (167)
3 1c1g_A Tropomyosin; contractIl 97.0 0.17 5.7E-06 46.7 21.6 36 442-477 71-106 (284)
4 3oja_B Anopheles plasmodium-re 96.8 0.015 5E-07 62.3 14.8 89 473-564 507-595 (597)
5 2dfs_A Myosin-5A; myosin-V, in 96.7 0.017 5.7E-07 68.0 15.2 128 401-531 893-1051(1080)
6 2efr_A General control protein 96.7 0.19 6.4E-06 47.2 19.0 135 381-547 1-142 (155)
7 2dfs_A Myosin-5A; myosin-V, in 96.5 0.019 6.3E-07 67.6 13.5 25 524-548 1023-1047(1080)
8 1i84_S Smooth muscle myosin he 96.3 0.0064 2.2E-07 71.7 8.1 38 441-478 928-965 (1184)
9 1i84_S Smooth muscle myosin he 96.0 0.12 4.1E-06 61.0 16.8 42 440-481 857-898 (1184)
10 3oja_A Leucine-rich immune mol 94.8 0.76 2.6E-05 48.2 16.7 142 384-542 325-481 (487)
11 3na7_A HP0958; flagellar bioge 94.4 2.8 9.6E-05 41.2 18.7 86 441-526 54-148 (256)
12 3oja_B Anopheles plasmodium-re 93.8 0.27 9.1E-06 52.6 10.6 46 489-534 537-582 (597)
13 3i00_A HIP-I, huntingtin-inter 93.0 0.64 2.2E-05 41.9 10.1 83 366-490 8-90 (120)
14 2ocy_A RAB guanine nucleotide 91.6 9 0.00031 35.9 17.2 97 442-544 53-149 (154)
15 3vkg_A Dynein heavy chain, cyt 91.6 6.5 0.00022 51.5 20.2 25 398-422 1927-1951(3245)
16 1f5n_A Interferon-induced guan 91.4 20 0.00069 39.6 21.9 174 369-542 375-585 (592)
17 2b9c_A Striated-muscle alpha t 91.3 4.5 0.00015 37.4 13.9 85 466-550 50-141 (147)
18 3na7_A HP0958; flagellar bioge 91.1 12 0.0004 36.7 17.6 37 442-478 41-77 (256)
19 3o0z_A RHO-associated protein 90.0 9.9 0.00034 36.1 15.1 74 459-542 88-161 (168)
20 2v71_A Nuclear distribution pr 89.5 16 0.00054 35.3 16.9 78 455-549 50-127 (189)
21 3vkg_A Dynein heavy chain, cyt 89.3 26 0.00089 46.1 22.8 17 414-430 1926-1942(3245)
22 3iox_A AGI/II, PA; alpha helix 85.9 6.5 0.00022 42.9 12.5 73 462-544 35-107 (497)
23 3mq7_A Bone marrow stromal ant 85.8 16 0.00055 33.0 12.9 64 489-552 49-113 (121)
24 1otr_A Protein CUE2; protein-p 84.3 0.9 3.1E-05 35.1 3.7 38 170-207 6-43 (49)
25 2i1j_A Moesin; FERM, coiled-co 83.5 0.66 2.3E-05 51.0 3.8 126 417-549 326-458 (575)
26 2fxo_A Myosin heavy chain, car 82.7 26 0.00088 31.2 15.9 96 440-535 13-108 (129)
27 1m1j_B Fibrinogen beta chain; 80.8 28 0.00096 37.7 14.9 97 435-535 95-193 (464)
28 1ic2_A Tropomyosin alpha chain 80.4 15 0.00053 30.2 10.1 39 509-547 33-71 (81)
29 4emc_A Monopolin complex subun 79.3 6.4 0.00022 38.1 8.4 28 451-478 10-37 (190)
30 1gmj_A ATPase inhibitor; coile 79.0 10 0.00035 32.4 8.6 45 495-545 35-79 (84)
31 3ghg_A Fibrinogen alpha chain; 78.4 13 0.00046 40.8 11.5 43 510-552 131-195 (562)
32 1m1j_C Fibrinogen gamma chain; 78.0 9.7 0.00033 40.6 10.2 36 434-473 32-67 (409)
33 2v71_A Nuclear distribution pr 78.0 22 0.00074 34.3 11.7 110 373-489 17-133 (189)
34 2lw1_A ABC transporter ATP-bin 77.8 5.8 0.0002 33.3 6.8 48 503-550 29-82 (89)
35 3hnw_A Uncharacterized protein 77.6 14 0.00049 33.7 9.9 63 458-534 72-134 (138)
36 2xnx_M M protein, M1-BC1; cell 72.8 2.7 9.2E-05 39.2 3.7 32 445-476 64-95 (146)
37 3ni0_A Bone marrow stromal ant 72.4 32 0.0011 30.1 10.1 63 454-530 25-87 (99)
38 1l8d_A DNA double-strand break 71.3 47 0.0016 28.2 11.5 40 441-480 4-43 (112)
39 2xus_A Breast cancer metastasi 69.1 13 0.00046 28.7 6.3 41 496-538 6-46 (49)
40 3tnu_B Keratin, type II cytosk 69.1 9.6 0.00033 33.9 6.4 27 453-479 74-100 (129)
41 2ocy_A RAB guanine nucleotide 67.9 43 0.0015 31.3 10.8 73 439-536 12-84 (154)
42 3tnu_A Keratin, type I cytoske 67.8 7.7 0.00026 34.7 5.6 35 442-479 68-102 (131)
43 3oja_A Leucine-rich immune mol 66.5 1.3E+02 0.0044 31.3 16.4 57 444-500 425-481 (487)
44 3haj_A Human pacsin2 F-BAR; pa 65.2 1.4E+02 0.0049 31.5 15.8 20 497-516 225-244 (486)
45 2i1j_A Moesin; FERM, coiled-co 64.4 9.2 0.00031 42.1 6.4 149 382-537 302-460 (575)
46 4dk0_A Putative MACA; alpha-ha 64.1 13 0.00043 37.1 7.0 74 406-483 85-158 (369)
47 3u1c_A Tropomyosin alpha-1 cha 63.8 70 0.0024 27.4 11.7 28 504-531 52-79 (101)
48 1x8y_A Lamin A/C; structural p 63.8 47 0.0016 27.8 9.3 50 423-479 4-53 (86)
49 3o0z_A RHO-associated protein 63.2 1E+02 0.0036 29.2 18.1 62 416-481 21-82 (168)
50 1u4q_A Spectrin alpha chain, b 63.1 1.1E+02 0.0037 29.4 15.5 42 381-422 4-46 (322)
51 2fxo_A Myosin heavy chain, car 62.5 84 0.0029 27.9 15.2 85 461-545 41-125 (129)
52 3q8t_A Beclin-1; autophagy, AT 61.3 77 0.0026 27.1 13.1 87 445-538 9-95 (96)
53 2v66_B Nuclear distribution pr 60.7 91 0.0031 27.7 15.5 48 375-422 5-52 (111)
54 1deq_A Fibrinogen (alpha chain 60.3 76 0.0026 33.7 12.0 84 464-547 63-157 (390)
55 2jee_A YIIU; FTSZ, septum, coi 59.5 25 0.00086 29.8 6.8 42 510-551 20-75 (81)
56 2efr_A General control protein 59.5 1.1E+02 0.0039 28.4 14.8 84 445-528 26-116 (155)
57 2xs1_A Programmed cell death 6 59.1 2E+02 0.007 32.0 16.2 152 368-520 377-580 (704)
58 2b9c_A Striated-muscle alpha t 57.9 1.1E+02 0.0039 28.0 11.9 82 415-496 27-108 (147)
59 2di0_A Activating signal coint 56.6 14 0.00049 30.5 4.7 41 167-207 12-52 (71)
60 1gk4_A Vimentin; intermediate 56.5 18 0.00061 30.1 5.5 49 425-480 4-52 (84)
61 2eqb_B RAB guanine nucleotide 54.4 38 0.0013 29.5 7.3 24 455-478 6-29 (97)
62 3ajw_A Flagellar FLIJ protein; 54.3 84 0.0029 27.4 9.8 34 444-477 23-56 (150)
63 2v4h_A NF-kappa-B essential mo 53.7 68 0.0023 28.6 8.9 76 441-537 32-110 (110)
64 1a92_A Delta antigen; leucine 51.5 13 0.00045 28.8 3.4 27 437-470 11-37 (50)
65 3fpp_A Macrolide-specific effl 49.9 11 0.00039 37.1 3.8 58 407-468 85-142 (341)
66 3tnu_B Keratin, type II cytosk 49.7 1.4E+02 0.0047 26.4 12.6 49 431-479 6-54 (129)
67 2z5i_A TM, general control pro 49.6 55 0.0019 25.3 6.8 32 505-536 14-45 (52)
68 1wle_A Seryl-tRNA synthetase; 48.2 1.9E+02 0.0063 31.5 13.1 59 414-472 43-102 (501)
69 4dk0_A Putative MACA; alpha-ha 47.1 13 0.00044 37.1 3.7 25 515-539 127-151 (369)
70 3mq9_A Bone marrow stromal ant 46.3 1E+02 0.0035 31.9 10.5 73 380-466 397-469 (471)
71 3mq7_A Bone marrow stromal ant 46.0 1.7E+02 0.0058 26.4 10.8 39 439-477 70-108 (121)
72 2e7s_A RAB guanine nucleotide 45.9 1.2E+02 0.0041 27.9 9.5 116 406-538 16-131 (135)
73 3tnu_A Keratin, type I cytoske 45.8 1.6E+02 0.0055 26.1 11.4 45 431-475 8-59 (131)
74 3ghg_C Fibrinogen gamma chain; 45.2 1.5E+02 0.0052 31.6 11.6 94 435-535 33-130 (411)
75 2dq0_A Seryl-tRNA synthetase; 44.6 79 0.0027 33.7 9.5 55 414-468 4-59 (455)
76 1d7m_A Cortexillin I; coiled-c 42.5 1.7E+02 0.0058 25.4 10.7 64 439-516 24-87 (101)
77 3ghg_A Fibrinogen alpha chain; 42.4 1E+02 0.0034 34.1 9.8 21 372-392 56-76 (562)
78 3trt_A Vimentin; cytoskeleton, 41.9 91 0.0031 24.9 7.4 65 414-480 11-75 (77)
79 3m9b_A Proteasome-associated A 41.8 21 0.00073 35.8 4.2 42 497-538 55-96 (251)
80 3s4r_A Vimentin; alpha-helix, 41.7 1.6E+02 0.0055 24.9 10.0 59 462-543 24-82 (93)
81 3mud_A DNA repair protein XRCC 41.5 44 0.0015 31.9 6.2 32 506-537 138-169 (175)
82 1go4_E MAD1 (mitotic arrest de 40.0 76 0.0026 27.8 6.9 63 406-482 13-89 (100)
83 3u59_A Tropomyosin beta chain; 39.6 1.7E+02 0.006 24.7 12.0 34 512-545 53-86 (101)
84 2nrj_A HBL B protein; enteroto 39.3 3.3E+02 0.011 27.9 14.4 133 400-550 164-323 (346)
85 1ic2_A Tropomyosin alpha chain 38.3 1.6E+02 0.0056 24.0 10.0 73 439-539 5-77 (81)
86 2k48_A Nucleoprotein; viral pr 38.0 1.3E+02 0.0045 26.6 8.1 23 516-538 81-103 (107)
87 3hhm_B NISH2 P85alpha; PI3KCA, 37.4 3.5E+02 0.012 28.1 12.8 55 504-558 213-267 (373)
88 2zqm_A Prefoldin beta subunit 37.3 1.5E+02 0.0051 24.9 8.4 71 411-481 26-104 (117)
89 1u5p_A Spectrin alpha chain, b 36.9 2.4E+02 0.0081 25.5 16.2 42 381-422 4-46 (216)
90 1cii_A Colicin IA; bacteriocin 36.8 2.8E+02 0.0095 30.5 11.9 50 437-486 360-409 (602)
91 3bas_A Myosin heavy chain, str 36.7 1.9E+02 0.0063 24.2 10.8 44 440-483 14-57 (89)
92 3mtu_E Head morphogenesis prot 36.5 54 0.0018 27.6 5.2 34 504-537 38-71 (77)
93 1fxk_A Prefoldin; archaeal pro 35.9 1.5E+02 0.005 24.6 8.0 71 411-481 21-99 (107)
94 1m1j_C Fibrinogen gamma chain; 35.2 2.5E+02 0.0084 29.9 11.3 24 510-533 105-128 (409)
95 4efa_G V-type proton ATPase su 34.9 2.4E+02 0.0084 25.0 9.7 79 375-456 12-99 (119)
96 3a7p_A Autophagy protein 16; c 34.7 1E+02 0.0034 28.9 7.2 34 440-473 96-129 (152)
97 3iv1_A Tumor susceptibility ge 34.3 2E+02 0.007 24.1 8.4 61 464-532 14-75 (78)
98 3qne_A Seryl-tRNA synthetase, 33.9 1.2E+02 0.0041 33.0 8.8 34 438-471 31-64 (485)
99 1cun_A Protein (alpha spectrin 33.7 2.6E+02 0.0089 25.0 18.0 42 382-423 2-44 (213)
100 3cl3_D NF-kappa-B essential mo 33.7 46 0.0016 30.4 4.7 16 519-534 78-93 (130)
101 1wgl_A TOLL-interacting protei 33.4 38 0.0013 26.7 3.7 38 170-207 11-48 (59)
102 4dzn_A Coiled-coil peptide CC- 33.1 82 0.0028 22.1 4.8 27 512-538 4-30 (33)
103 3haj_A Human pacsin2 F-BAR; pa 33.0 4.6E+02 0.016 27.6 15.4 19 402-420 99-118 (486)
104 2yy0_A C-MYC-binding protein; 32.7 52 0.0018 25.5 4.2 31 512-542 21-51 (53)
105 1zbt_A RF-1, peptide chain rel 32.1 64 0.0022 34.0 6.2 39 376-417 20-58 (371)
106 3a7p_A Autophagy protein 16; c 31.7 3.2E+02 0.011 25.5 10.5 43 505-547 91-133 (152)
107 2b5u_A Colicin E3; high resolu 30.9 5.8E+02 0.02 28.2 18.0 174 358-549 266-448 (551)
108 3pmr_A Amyloid-like protein 1; 30.4 1.1E+02 0.0038 30.2 7.1 64 424-487 27-102 (219)
109 1cii_A Colicin IA; bacteriocin 30.2 5.9E+02 0.02 28.0 13.1 39 440-478 356-394 (602)
110 3iox_A AGI/II, PA; alpha helix 30.0 5.8E+02 0.02 27.9 15.2 63 466-538 46-108 (497)
111 1bb1_A Designed, thermostable 29.6 1.2E+02 0.004 21.7 5.1 28 507-534 6-33 (36)
112 2ic9_A Nucleocapsid protein; h 29.5 1.7E+02 0.0057 25.6 7.3 26 516-541 51-76 (96)
113 1wle_A Seryl-tRNA synthetase; 29.4 4.1E+02 0.014 28.8 12.1 24 525-548 124-147 (501)
114 3hnw_A Uncharacterized protein 29.3 3.2E+02 0.011 24.7 11.7 34 511-544 97-130 (138)
115 1p9i_A Cortexillin I/GCN4 hybr 29.3 41 0.0014 23.3 2.7 23 456-478 1-23 (31)
116 1lwu_C Fibrinogen gamma chain; 28.6 1.6E+02 0.0054 30.4 8.3 35 504-538 20-54 (323)
117 3q8t_A Beclin-1; autophagy, AT 28.4 1.9E+02 0.0066 24.6 7.5 41 492-532 14-54 (96)
118 2dhy_A CUE domain-containing p 27.7 71 0.0024 25.9 4.4 40 166-205 16-55 (67)
119 4b6x_A AVRRPS4, avirulence pro 27.2 69 0.0024 27.3 4.4 32 513-544 25-56 (90)
120 2dq0_A Seryl-tRNA synthetase; 27.2 4.4E+02 0.015 28.0 11.8 28 523-550 75-102 (455)
121 3edu_A Beta-I spectrin, spectr 27.0 3.6E+02 0.012 24.6 16.5 43 514-556 151-205 (218)
122 2ic6_A Nucleocapsid protein; h 27.0 2.2E+02 0.0075 24.0 7.3 23 516-538 51-73 (78)
123 1uii_A Geminin; human, DNA rep 25.8 3.1E+02 0.011 23.3 8.2 51 491-544 30-80 (83)
124 4g3o_A E3 ubiquitin-protein li 25.6 92 0.0031 24.9 4.6 39 162-202 12-50 (58)
125 1ik9_A DNA repair protein XRCC 25.3 4.7E+02 0.016 25.2 10.9 26 519-544 184-210 (213)
126 2xnx_M M protein, M1-BC1; cell 25.2 1.8E+02 0.006 27.1 7.1 19 529-547 120-138 (146)
127 2p22_C Protein SRN2; endosome, 25.2 4.5E+02 0.015 25.0 11.4 78 380-472 62-139 (192)
128 3u1c_A Tropomyosin alpha-1 cha 24.9 3.2E+02 0.011 23.2 12.8 42 504-545 45-86 (101)
129 3kin_B Kinesin heavy chain; mo 24.9 89 0.003 27.5 4.9 31 506-536 85-115 (117)
130 2wt7_B Transcription factor MA 24.6 2.7E+02 0.0094 23.8 7.7 47 485-537 36-82 (90)
131 2ejs_A Autocrine motility fact 24.3 99 0.0034 24.6 4.6 34 168-202 13-46 (58)
132 3mov_A Lamin-B1; LMNB1, B-type 24.3 3.3E+02 0.011 23.2 9.1 48 426-480 16-63 (95)
133 3d5a_X RF1, peptide chain rele 24.2 1.3E+02 0.0046 31.4 6.8 38 375-415 5-42 (354)
134 3cvf_A Homer-3, homer protein 24.2 1.7E+02 0.0057 24.6 6.2 26 455-480 7-32 (79)
135 1l8d_A DNA double-strand break 24.0 3.2E+02 0.011 22.9 10.6 39 440-478 64-102 (112)
136 1buu_A Protein (mannose-bindin 23.2 74 0.0025 28.4 4.2 24 515-538 21-44 (168)
137 1z96_A DNA-damage, UBA-domain 23.1 1.2E+02 0.0043 20.8 4.5 33 170-204 6-38 (40)
138 2eqb_B RAB guanine nucleotide 22.8 3.8E+02 0.013 23.3 11.1 34 445-478 24-57 (97)
139 1wlq_A Geminin; coiled-coil; 2 22.7 3.3E+02 0.011 23.1 7.7 50 492-544 23-72 (83)
140 1ify_A HHR23A, UV excision rep 22.6 89 0.0031 23.3 3.9 38 87-127 7-44 (49)
141 2fic_A Bridging integrator 1; 22.4 4.9E+02 0.017 24.5 13.6 27 397-423 129-155 (251)
142 1ses_A Seryl-tRNA synthetase; 22.4 2.2E+02 0.0074 30.0 8.2 27 523-549 70-96 (421)
143 4etp_A Kinesin-like protein KA 22.3 1.7E+02 0.006 30.6 7.4 56 479-550 2-57 (403)
144 2efl_A Formin-binding protein 21.6 5.2E+02 0.018 24.5 19.2 13 501-513 217-229 (305)
145 2qyw_A Vesicle transport throu 21.5 2.1E+02 0.0071 24.5 6.5 47 504-550 16-75 (102)
146 2dam_A ETEA protein; KIAA0887, 21.5 1.4E+02 0.0047 23.8 5.0 38 170-207 20-57 (67)
147 3r4h_A Coiled coil helix CC-TE 21.4 96 0.0033 21.9 3.4 20 518-537 3-22 (34)
148 3ra3_A P1C; coiled coil domain 20.6 1.1E+02 0.0039 20.7 3.5 22 509-530 6-27 (28)
149 3qne_A Seryl-tRNA synthetase, 20.5 5.5E+02 0.019 27.8 11.0 22 526-547 80-101 (485)
150 3onj_A T-snare VTI1; helix, HA 20.4 2.3E+02 0.0079 23.9 6.5 46 505-550 3-60 (97)
151 4dyl_A Tyrosine-protein kinase 20.3 2E+02 0.0067 29.8 7.3 56 421-477 329-389 (406)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.19 E-value=0.14 Score=47.23 Aligned_cols=10 Identities=30% Similarity=0.199 Sum_probs=3.7
Q ss_pred HHHHHHHHhh
Q 008232 411 LTELKMLRME 420 (573)
Q Consensus 411 ~~ELk~LR~E 420 (573)
..++..++.+
T Consensus 47 ~~~~~~~~~~ 56 (284)
T 1c1g_A 47 QKKLKATEDE 56 (284)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 2
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=97.08 E-value=0.012 Score=54.29 Aligned_cols=135 Identities=27% Similarity=0.409 Sum_probs=99.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHH-hhhhcccch--
Q 008232 369 DQKDEIVVTMLHQIKDLERQVKERKE----------WAHQKAMQAARKLSNDLTELKMLRMEREETQR-LKKGKQTLE-- 435 (573)
Q Consensus 369 D~KdEmil~Lv~rv~eLq~qlkewtd----------WA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~r-lkKeKq~lE-- 435 (573)
..||-+|-+|-.-+.+|++++.|-.+ =-+.||=|--.|=.--+.||-.||.|.+-+|| |.|--+.|-
T Consensus 7 E~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn 86 (167)
T 4gkw_A 7 EDKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRN 86 (167)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 56888999999999999999988654 35778888888888888899999998888876 333222222
Q ss_pred ---hh----HHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-HHHH
Q 008232 436 ---DT----TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLK-RLLA 507 (573)
Q Consensus 436 ---e~----T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lk-kl~~ 507 (573)
-| -+.+|-|+|--|+-.- +-|-.|..-+-.||+|+|--||.+.|...|+-.+ |=|...+| |++.
T Consensus 87 ~~qQnQQSlDiRKLrELEADLKEKD-------sMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~L-kvENE~vkerl~m 158 (167)
T 4gkw_A 87 SQQQNQQSLDMRKLGELEADLKEKD-------SMVESLTETIGILRKELENEKLKAAENMDSFEKL-SMENENLKEKIAH 158 (167)
T ss_dssp HHHHHHHHHHHHHTHHHHHTHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred hHHHhHhhhhHHHHHHHHhHHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHhHHHHHHH
Confidence 22 4678888887776654 6677788888899999999999999999987543 44444443 4444
Q ss_pred HHHH
Q 008232 508 WEKQ 511 (573)
Q Consensus 508 WEkQ 511 (573)
+..|
T Consensus 159 YR~Q 162 (167)
T 4gkw_A 159 YRAQ 162 (167)
T ss_dssp HTTT
T ss_pred HHHh
Confidence 4333
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.00 E-value=0.17 Score=46.68 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHH
Q 008232 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEM 477 (573)
Q Consensus 442 LsEmEnAl~kas~QldrAna~vrrLE~ena~lr~Em 477 (573)
+.+++..+....+++......+..++.+...+..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (284)
T 1c1g_A 71 LELAEKKATDAEADVASLNRRIQLFEEELDRAQERL 106 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.84 E-value=0.015 Score=62.32 Aligned_cols=89 Identities=18% Similarity=0.133 Sum_probs=58.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhccc
Q 008232 473 IRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLICLFP 552 (573)
Q Consensus 473 lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~~ 552 (573)
+++++...+-...+-....++..+..++-.+.++.-++++..++..+..+|.++.+++||++++++..+|.|.+..-
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~--- 583 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR--- 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 33333333334444445566666666667778889999999999999999999999999999999999998877654
Q ss_pred cccccccccccc
Q 008232 553 WFSTHKISTNIH 564 (573)
Q Consensus 553 ~~~~~~~~~~~~ 564 (573)
-|+|..++..-|
T Consensus 584 ~~~~~~~~~~~~ 595 (597)
T 3oja_B 584 NPDTRRVSHHHH 595 (597)
T ss_dssp ------------
T ss_pred CCcccccccccc
Confidence 467777665544
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.71 E-value=0.017 Score=67.98 Aligned_cols=128 Identities=19% Similarity=0.209 Sum_probs=58.8
Q ss_pred HHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhh----------------------------HHhhHHHH---HHHH
Q 008232 401 MQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDT----------------------------TMKRLSEM---ENAL 449 (573)
Q Consensus 401 mQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~----------------------------T~KrLsEm---EnAl 449 (573)
+|++-|--....+++.||.|....+++++.++.||.- ..+..++| -..|
T Consensus 893 iQs~~R~~laRr~~~~Lk~ear~~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~l 972 (1080)
T 2dfs_A 893 LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL 972 (1080)
T ss_dssp HHHHHHHHHHHHHTTTC-----------------------------------------CHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4665554455556666666655555555544444432 22223333 1233
Q ss_pred HhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 450 RKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKEL 529 (573)
Q Consensus 450 ~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l 529 (573)
++...+++.+.+.|..|+.|+++++.+.+.+.-.-.+-...++++.. ..-.++.++++++.+|++.+.+-.+.+.+.
T Consensus 973 e~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 973 RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666777777777777777666544333333333333332 222566677777777777666666555555
Q ss_pred HH
Q 008232 530 QQ 531 (573)
Q Consensus 530 ~q 531 (573)
++
T Consensus 1050 ~~ 1051 (1080)
T 2dfs_A 1050 AK 1051 (1080)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 6
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.67 E-value=0.19 Score=47.22 Aligned_cols=135 Identities=19% Similarity=0.253 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhh-------
Q 008232 381 QIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKAS------- 453 (573)
Q Consensus 381 rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas------- 453 (573)
|+..|+.||++-.+=|..|.-.+|| +-.|+ +-++.. =+..-.|+.++|.+|+.+.
T Consensus 1 r~~~lE~qlkeaae~ad~KyeEvaR-~E~dL----------EraEER-------ae~aE~k~~eLEeeL~~v~~nlKsLE 62 (155)
T 2efr_A 1 RMKQLEDKVEELLSKNYHLENEVAR-LKKLL----------ERAEER-------AELSEGKSAELEEELKTVTNNLKSLE 62 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----------HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHH-HHHHH----------HHHHHH-------HHHHHHHHHHHHHHHHHHHHhhccch
Confidence 5678999999998889999999988 33332 221111 1123345556665554443
Q ss_pred hhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 454 GQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCL 533 (573)
Q Consensus 454 ~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel 533 (573)
.+-++++-..-.+|.++..|......|-.+|-+...+ .+--|++-..|.++|..+|.|...++++|
T Consensus 63 ~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERs--------------v~kLEk~id~lEd~L~~~Kek~~~i~~eL 128 (155)
T 2efr_A 63 AQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERS--------------VTKLEKSIDDLEDELYAQKLKYKAISEEM 128 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667778888888888888888888777774 44567888999999999999999999999
Q ss_pred HHHHhHhHhhhhhh
Q 008232 534 ARIQQDQKETEVRL 547 (573)
Q Consensus 534 ~qak~~q~q~E~~~ 547 (573)
.++=..-..|.++.
T Consensus 129 d~tl~el~~~~~~~ 142 (155)
T 2efr_A 129 KQLEDKVEELLSKN 142 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccch
Confidence 98776666665543
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.48 E-value=0.019 Score=67.60 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhhhh
Q 008232 524 EKIKELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 524 ~Kl~~l~qel~qak~~q~q~E~~~~ 548 (573)
+|+..|.++.+..+++.+++|....
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888887777777775443
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.27 E-value=0.0064 Score=71.69 Aligned_cols=38 Identities=16% Similarity=0.362 Sum_probs=6.1
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHH
Q 008232 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (573)
Q Consensus 441 rLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmE 478 (573)
++.+++..+.....+++.......+++.+..+++.+++
T Consensus 928 ~l~ele~elee~ee~l~el~~e~~~le~el~~L~~ele 965 (1184)
T 1i84_S 928 ILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965 (1184)
T ss_dssp HHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.97 E-value=0.12 Score=60.99 Aligned_cols=42 Identities=14% Similarity=0.345 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
+++.+++..|.....++++....+.+++.+...++.|++.++
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555544444444
No 10
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.83 E-value=0.76 Score=48.23 Aligned_cols=142 Identities=11% Similarity=0.185 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchh---hHHhhHHHHHHHHHhhhhhhhh--
Q 008232 384 DLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLED---TTMKRLSEMENALRKASGQVDR-- 458 (573)
Q Consensus 384 eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe---~T~KrLsEmEnAl~kas~Qldr-- 458 (573)
+.+.|++.-..=-|..+..--.--..-..++..+++++. +++.+|+.+|+ .-++...+|+..+..+-+|+|.
T Consensus 325 eF~~Eve~L~~i~HrNLV~L~gyC~s~~~~~~~~~~~~~---~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 401 (487)
T 3oja_A 325 TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKI---TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQH 401 (487)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHhcccccchhhHHHHhcChHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcc
Confidence 344444444444444443332222233334555555555 33344444443 3567888999999999999986
Q ss_pred ----------hhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 459 ----------ANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKE 528 (573)
Q Consensus 459 ----------Ana~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~ 528 (573)
-|..+.+.|...+++-.|+|.++ +-.++.....+.|+.+++.|+.||..-..+|..
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 402 ATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAI--------------RDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHhhcch--------------hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 44444555554444444444322 223444667788888888888888888888888
Q ss_pred HHHHHHHHHhHhHh
Q 008232 529 LQQCLARIQQDQKE 542 (573)
Q Consensus 529 l~qel~qak~~q~q 542 (573)
..+.+.-+..+...
T Consensus 468 ~~~~~~~~~~~~~~ 481 (487)
T 3oja_A 468 ANATLQELVVREQN 481 (487)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHH
Confidence 88888777766543
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.44 E-value=2.8 Score=41.18 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhh---------hhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 441 RLSEMENALRKASGQVDRANAAVRRLET---------ENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQ 511 (573)
Q Consensus 441 rLsEmEnAl~kas~QldrAna~vrrLE~---------ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQ 511 (573)
.+.+++..+.+...+++.+.+.+.+.+. |...|..|++.++..-.......+++..+-...-+.+...+.+
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~ 133 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKE 133 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443332 3345777888888777777777777777776666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 008232 512 KAKLQEEIANEKEKI 526 (573)
Q Consensus 512 K~~LQEEla~eK~Kl 526 (573)
...++++|...+..+
T Consensus 134 l~~~~~~l~~~~~~~ 148 (256)
T 3na7_A 134 MLELEKLALELESLV 148 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666776666555443
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.77 E-value=0.27 Score=52.59 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 489 TTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (573)
Q Consensus 489 ~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~ 534 (573)
..++.+-++-.+.-++++...++...|++|++..+++|.++++++.
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444555566777777888888888888888888877653
No 13
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=92.99 E-value=0.64 Score=41.87 Aligned_cols=83 Identities=18% Similarity=0.309 Sum_probs=48.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHH
Q 008232 366 ITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEM 445 (573)
Q Consensus 366 vp~D~KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEm 445 (573)
+.+|+||.+|-.|=.-|..|+.++.--+-=|+.-|.| =+.|+.+|
T Consensus 8 ~~~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~q-----------------------------------l~~~i~~L 52 (120)
T 3i00_A 8 VNKDEKDHLIERLYREISGLKAQLENMKTESQRVVLQ-----------------------------------LKGHVSEL 52 (120)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHH
Confidence 4789999988887777766665554332222222222 23556666
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHH
Q 008232 446 ENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTT 490 (573)
Q Consensus 446 EnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~s 490 (573)
|..|.-..++ +++.-.||..||.|++.....+.++...
T Consensus 53 e~eL~e~r~~-------~q~a~~e~e~Lr~e~~~l~~~~~~~~~~ 90 (120)
T 3i00_A 53 EADLAEQQHL-------RQQAADDCEFLRAELDELRRQREDTEKA 90 (120)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 6665555544 6666778888888888877766666554
No 14
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.57 E-value=9 Score=35.91 Aligned_cols=97 Identities=18% Similarity=0.257 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIAN 521 (573)
Q Consensus 442 LsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~ 521 (573)
+++.+-.+.+...++.+....-..-|.+...|..|+|- |+|+ =+-|+=+---..-+.-..-|..-..|++.|.+
T Consensus 53 ~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEe--LTas----LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e 126 (154)
T 2ocy_A 53 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED--LTAS----LFDEANNMVADARKEKYAIEILNKRLTEQLRE 126 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555566666666653 3322 22222222222233344556777889999999
Q ss_pred HHHHHHHHHHHHHHHHhHhHhhh
Q 008232 522 EKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 522 eK~Kl~~l~qel~qak~~q~q~E 544 (573)
-...|.-+|.+|...|..-..|+
T Consensus 127 ~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 127 KDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999888766654
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.57 E-value=6.5 Score=51.49 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhcHHHHHHHHhhHH
Q 008232 398 QKAMQAARKLSNDLTELKMLRMERE 422 (573)
Q Consensus 398 qKvmQaa~rL~kd~~ELk~LR~Eke 422 (573)
+|..+++..+..-+.||..++.+.+
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~ 1951 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELD 1951 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554445444444443
No 16
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=91.40 E-value=20 Score=39.64 Aligned_cols=174 Identities=16% Similarity=0.165 Sum_probs=117.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcHHH------------HHHHHhhHH-------------
Q 008232 369 DQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQA-ARKLSNDLTE------------LKMLRMERE------------- 422 (573)
Q Consensus 369 D~KdEmil~Lv~rv~eLq~qlkewtdWA~qKvmQa-a~rL~kd~~E------------Lk~LR~Eke------------- 422 (573)
|...+.--+|..++.+.-.++....+=+..+--++ -++|...+.+ ...+..+++
T Consensus 375 d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~ll~~l~~~l~~~i~~g~~~~p~g~~~~~~~~~~~~~~Y~~~~~kg 454 (592)
T 1f5n_A 375 DVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKG 454 (592)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHHHHHhcCCc
Confidence 55566777788887777777666666555443332 2333333322 112222222
Q ss_pred -----HHHHhhhhcccchhh---HHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHH
Q 008232 423 -----ETQRLKKGKQTLEDT---TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEV 494 (573)
Q Consensus 423 -----e~~rlkKeKq~lEe~---T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~ 494 (573)
..+.+=+.+..++++ |=+.|++.|.+|......-+.|....+.|+..+.++..-||+-+.+=.|-.++..+=
T Consensus 455 ~~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~k 534 (592)
T 1f5n_A 455 IQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 534 (592)
T ss_dssp TTHHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333445555554 448899999999888888888999999999999999999999999999999999997
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHhHh
Q 008232 495 AKREKKCLK-RLLAWEKQKAKLQEEIANE--KEKIKELQQCLARIQQDQKE 542 (573)
Q Consensus 495 ~kkekk~lk-kl~~WEkQK~~LQEEla~e--K~Kl~~l~qel~qak~~q~q 542 (573)
.++|++.+. ..+..-..|.+-|+++-.+ +.|...+++|+.+.++.+..
T Consensus 535 me~~~~~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~~~~ 585 (592)
T 1f5n_A 535 MENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRR 585 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 777776554 4444555666666666554 67888888888887776443
No 17
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=91.30 E-value=4.5 Score=37.38 Aligned_cols=85 Identities=19% Similarity=0.177 Sum_probs=63.0
Q ss_pred HhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 466 LETENAEIRAEMEASKLSAAESVTTCLEVAKREK-------KCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 466 LE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkek-------k~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
-+.....|-.+..-||..|-++..-+-|+.+|-. ++-.|...=|..-..|.+||..--.+|..|.-.-.++.+
T Consensus 50 deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~ 129 (147)
T 2b9c_A 50 DEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLS 129 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 3344566777788888888888888888877644 334455666777777888888877777777777777888
Q ss_pred HhHhhhhhhhhc
Q 008232 539 DQKETEVRLICL 550 (573)
Q Consensus 539 ~q~q~E~~~~~~ 550 (573)
....+|.+++.|
T Consensus 130 rE~~yee~I~~L 141 (147)
T 2b9c_A 130 KNYHLENEVARL 141 (147)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH
Confidence 888888888776
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.07 E-value=12 Score=36.74 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHH
Q 008232 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (573)
Q Consensus 442 LsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmE 478 (573)
+..++..+.++..+++-....++++|.+++.++.-.+
T Consensus 41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~ 77 (256)
T 3na7_A 41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIA 77 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555544433
No 19
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.97 E-value=9.9 Score=36.14 Aligned_cols=74 Identities=23% Similarity=0.272 Sum_probs=44.5
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 459 ANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 459 Ana~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
+.-.+..|++.+..|..|++..|-+-+ .+.---+....++-..||+|+-+.=||. -||..+|+.++|-..
T Consensus 88 ~se~~~elq~ri~~L~~El~~~k~~~~-------k~~~e~r~L~Ekl~~lEKe~a~~eid~~---~eLKalQ~~~eqE~~ 157 (168)
T 3o0z_A 88 DSEMIGDLQARITSLQEEVKHLKHNLE-------KVEGERKEAQDMLNHSEKEKNNLEIDLN---YKLKSLQQRLEQEVN 157 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHH
Confidence 444556677777777777766554322 2233344555677777777777765543 357777777777555
Q ss_pred HhHh
Q 008232 539 DQKE 542 (573)
Q Consensus 539 ~q~q 542 (573)
..+.
T Consensus 158 ~H~~ 161 (168)
T 3o0z_A 158 EHKV 161 (168)
T ss_dssp HHCC
T ss_pred HHHH
Confidence 4443
No 20
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=89.47 E-value=16 Score=35.30 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=58.9
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 455 QVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (573)
Q Consensus 455 QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~ 534 (573)
+|++++...+.|...|+.++.|.+..|-.-..+- .-+.++-..||.||+..+.....++..+-
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~-----------------~e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY-----------------AQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777888888888888877764332221 13456788999999999999999999999
Q ss_pred HHHhHhHhhhhhhhh
Q 008232 535 RIQQDQKETEVRLIC 549 (573)
Q Consensus 535 qak~~q~q~E~~~~~ 549 (573)
...+..+-+|-+-|.
T Consensus 113 eLEq~NDdlEr~~R~ 127 (189)
T 2v71_A 113 ELEQANDDLERAKRA 127 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHH
Confidence 999999888876554
No 21
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.35 E-value=26 Score=46.11 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=7.5
Q ss_pred HHHHHhhHHHHHHhhhh
Q 008232 414 LKMLRMEREETQRLKKG 430 (573)
Q Consensus 414 Lk~LR~Ekee~~rlkKe 430 (573)
|..|+.=.+.++.+|++
T Consensus 1926 L~KL~et~~~V~~l~~~ 1942 (3245)
T 3vkg_A 1926 LKKLRDTEAQVKDLQVS 1942 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 22
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=85.89 E-value=6.5 Score=42.90 Aligned_cols=73 Identities=25% Similarity=0.230 Sum_probs=39.7
Q ss_pred HHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 008232 462 AVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQK 541 (573)
Q Consensus 462 ~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~ 541 (573)
.+....++|++|.+|-||.|-+=.+.-+..-..++ ..++..++.+.++++=..|+++-++++++.+..+.
T Consensus 35 ~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~----------kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~la 104 (497)
T 3iox_A 35 AVAANNAANAALTAENTAIKKRNADAKADYEAKLA----------KYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALA 104 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777776433333332222222 24444444455555555566666666666666555
Q ss_pred hhh
Q 008232 542 ETE 544 (573)
Q Consensus 542 q~E 544 (573)
++|
T Consensus 105 e~e 107 (497)
T 3iox_A 105 ELE 107 (497)
T ss_dssp HHT
T ss_pred HHh
Confidence 554
No 23
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.79 E-value=16 Score=32.98 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhccc
Q 008232 489 TTCLEVAKREKKCLKRLLAW-EKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLICLFP 552 (573)
Q Consensus 489 ~sc~e~~kkekk~lkkl~~W-EkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~~ 552 (573)
++|-....-=+.+|++-+++ .++-..||.||.+.++||.....++++.+......-+|+.+-+.
T Consensus 49 aTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~~ 113 (121)
T 3mq7_A 49 ATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKKY 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhccc
Confidence 46666666666666666666 45567899999999999888887777776666656677777553
No 24
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=84.27 E-value=0.9 Score=35.06 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHhcCcHHHhhhhCcC
Q 008232 170 GMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSIEIP 207 (573)
Q Consensus 170 GLVafL~~~fP~LS~~dAm~yLLlADadLl~A~a~~~~ 207 (573)
.=|.+|.+.||.++..++-++|..|+.|+-.|+.+-..
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45789999999999999999999999999999876543
No 25
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=83.55 E-value=0.66 Score=51.05 Aligned_cols=126 Identities=17% Similarity=0.266 Sum_probs=40.6
Q ss_pred HHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 008232 417 LRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAK 496 (573)
Q Consensus 417 LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~k 496 (573)
-|+.|+++++-+ +.|| .||-+||.+.++|...|.++.-++++|+.+......|.+----.+.|....++.+..
T Consensus 326 ~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~ 398 (575)
T 2i1j_A 326 EIAARERAEKKQ---QEYQ----DRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEE 398 (575)
T ss_dssp CCCHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHC----------------------------------
T ss_pred HHHHHHHHHHhH---HHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555543 3333 599999999999999999999999999877654433333222223333333333322
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhh
Q 008232 497 REKKCLKR-------LLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLIC 549 (573)
Q Consensus 497 kekk~lkk-------l~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~ 549 (573)
--.++.+. +..-+..-..|.+|-..--.-..+++++|..|+..+.+...+..-
T Consensus 399 ~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~ 458 (575)
T 2i1j_A 399 TKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLA 458 (575)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111 112222223344444333334456777777777777766666544
No 26
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=82.70 E-value=26 Score=31.22 Aligned_cols=96 Identities=15% Similarity=0.256 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEI 519 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEl 519 (573)
+.+..|+-.|.+....+++..+.-..||.++..+..|+..-.++=.---..|.++-.+-.+..++-.-.|.+-.-|++.+
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rl 92 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRL 92 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666667777777677676666666666666552222111234455555555555555555566666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 008232 520 ANEKEKIKELQQCLAR 535 (573)
Q Consensus 520 a~eK~Kl~~l~qel~q 535 (573)
..+......|..+-.+
T Consensus 93 eeeee~~~~L~~~kkk 108 (129)
T 2fxo_A 93 EDEEEMNAELTAKKRK 108 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666555555544433
No 27
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=80.83 E-value=28 Score=37.72 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=46.1
Q ss_pred hhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 008232 435 EDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLL--AWEKQK 512 (573)
Q Consensus 435 Ee~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~--~WEkQK 512 (573)
|++..+.|.|||+-|... +...+.+..|...+...=++++.....--+.+....+.+++-.+.++... .-..+-
T Consensus 95 q~~V~~~LqeLe~~l~~l----sn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i 170 (464)
T 1m1j_B 95 EKTVKPVLRDLKDRVAKF----SDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSL 170 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhhHhHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 344445555555555333 22233333333333333333333333333333333333333333333222 244566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008232 513 AKLQEEIANEKEKIKELQQCLAR 535 (573)
Q Consensus 513 ~~LQEEla~eK~Kl~~l~qel~q 535 (573)
..||..|...+.||.+|...+.+
T Consensus 171 ~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 171 RVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777888777776654
No 28
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.43 E-value=15 Score=30.22 Aligned_cols=39 Identities=21% Similarity=0.413 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhh
Q 008232 509 EKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 509 EkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~ 547 (573)
|+....+.+||.+-+.||..|..+|.++.+.-.++..++
T Consensus 33 e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 33 EERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777766655555443
No 29
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=79.28 E-value=6.4 Score=38.10 Aligned_cols=28 Identities=25% Similarity=0.359 Sum_probs=17.3
Q ss_pred hhhhhhhhhhHHHHHHhhhhHHHHHHHH
Q 008232 451 KASGQVDRANAAVRRLETENAEIRAEME 478 (573)
Q Consensus 451 kas~QldrAna~vrrLE~ena~lr~EmE 478 (573)
.+..|+|.|+-.|.+|-.||.-|+.+.+
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999999999888
No 30
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=78.99 E-value=10 Score=32.41 Aligned_cols=45 Identities=29% Similarity=0.376 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhh
Q 008232 495 AKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEV 545 (573)
Q Consensus 495 ~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~ 545 (573)
-++++..|++| |.+|++||...+..|..++.++...++..++++-
T Consensus 35 rqkekEqL~~L------Kkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 35 RARAKEQLAAL------KKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45666666664 5566899999999999999999988888887753
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.37 E-value=13 Score=40.83 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHhHhHhhhhh-hhhccc
Q 008232 510 KQKAKLQEEIANEKEKIKELQQCL---------------------ARIQQDQKETEVR-LICLFP 552 (573)
Q Consensus 510 kQK~~LQEEla~eK~Kl~~l~qel---------------------~qak~~q~q~E~~-~~~~~~ 552 (573)
+++..||-=|.++..||.+|.-.+ .--+++|||+|.- =+.|+|
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhcccCC
Confidence 667788888888888888876543 3456778888743 356777
No 32
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=78.01 E-value=9.7 Score=40.55 Aligned_cols=36 Identities=25% Similarity=0.228 Sum_probs=23.8
Q ss_pred chhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHH
Q 008232 434 LEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEI 473 (573)
Q Consensus 434 lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~l 473 (573)
.|.+.-|.|.+||+.|. ||+...+.|..|-..+..+
T Consensus 32 ~e~~V~~~l~~LE~~l~----elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 32 YRLTTDGELLEIEGLLQ----QATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 35667788999998887 5555566666555544444
No 33
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=77.99 E-value=22 Score=34.34 Aligned_cols=110 Identities=18% Similarity=0.245 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHH
Q 008232 373 EIVVTMLHQIKDLERQVKERKEWAHQ-------KAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEM 445 (573)
Q Consensus 373 Emil~Lv~rv~eLq~qlkewtdWA~q-------KvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEm 445 (573)
+....+..++.+|+.++.+..+=-.+ =+-|+-.++..-...+..|+.|.++...- -+..--...+-++.+
T Consensus 17 ~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K---~~~~~~e~~~~~~~L 93 (189)
T 2v71_A 17 ELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEK---LEHQYAQSYKQVSVL 93 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 45677788888888888887765442 34455566666777778888887754321 111111123467778
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHH
Q 008232 446 ENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVT 489 (573)
Q Consensus 446 EnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~ 489 (573)
+..|.......+.-...+|.||..|-.+ |.+......|..
T Consensus 94 q~el~~l~~~~~~l~~~ireLEq~NDdl----Er~~R~~~~Sle 133 (189)
T 2v71_A 94 EDDLSQTRAIKEQLHKYVRELEQANDDL----ERAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHhhHH
Confidence 8888888888888889999999999765 445555555544
No 34
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=77.78 E-value=5.8 Score=33.27 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 503 KRLLAWEKQKAKLQEEIAN------EKEKIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 503 kkl~~WEkQK~~LQEEla~------eK~Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
.++...|.+...|+++|++ --.++..++++++++++.-.+.+.||--|
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999985 35799999999999999999999999654
No 35
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.60 E-value=14 Score=33.66 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=35.3
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 458 RANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLA 534 (573)
Q Consensus 458 rAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~ 534 (573)
++......|+.++.++..|+..-|-...+.-. ++..-+++...|++|+.....++.+|+.+|.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~--------------k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQI--------------KAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555544333322 4555556666677777777777776665554
No 36
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=72.76 E-value=2.7 Score=39.16 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=17.0
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHH
Q 008232 445 MENALRKASGQVDRANAAVRRLETENAEIRAE 476 (573)
Q Consensus 445 mEnAl~kas~QldrAna~vrrLE~ena~lr~E 476 (573)
+|+.+...+-.++...++...++.+.+.++++
T Consensus 64 le~~~~~l~rdleasr~akk~~ea~la~l~~~ 95 (146)
T 2xnx_M 64 LEKELEAITREQEINRNLLGNAKLELDQLSSE 95 (146)
T ss_dssp HTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 34444444555555555555555555555554
No 37
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=72.43 E-value=32 Score=30.07 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=39.3
Q ss_pred hhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 454 GQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQ 530 (573)
Q Consensus 454 ~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~ 530 (573)
.||-+|.-..|+-|++-+-+. .++-+.++-+++||.- -+-|.++-..||.||++.++||....
T Consensus 25 ~qLT~Aq~~l~~~eaQAaTCN-----------qTV~tL~~SL~kekaq---~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 25 RQLTRTQDSLLQAETQANSCN-----------LTVVTLQESLEKKVSQ---ALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666655555554444332 3455555666666543 44556777888999988888776655
No 38
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=71.30 E-value=47 Score=28.16 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHh
Q 008232 441 RLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEAS 480 (573)
Q Consensus 441 rLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAa 480 (573)
.|.+.+..+.....+++..+.....++.+..+++..+.-.
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444445555555555566667777777777666543
No 39
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=69.11 E-value=13 Score=28.74 Aligned_cols=41 Identities=27% Similarity=0.566 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 496 KREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 496 kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
+|...|+..+..-|+|-+.|.|-|= +++|++|.++|+++++
T Consensus 6 rrr~e~ld~l~~LEkqF~~LkEqlY--~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 6 RRRSECVSEMLDLEKQFSELKEKLF--RERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHc
Confidence 7888999999999999999999885 5679999999998765
No 40
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.06 E-value=9.6 Score=33.94 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=23.8
Q ss_pred hhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 008232 453 SGQVDRANAAVRRLETENAEIRAEMEA 479 (573)
Q Consensus 453 s~QldrAna~vrrLE~ena~lr~EmEA 479 (573)
..++..+++.+..||.+.+.+|.+|+.
T Consensus 74 ~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 74 ELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 457888899999999999999999974
No 41
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.94 E-value=43 Score=31.33 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=42.0
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEE 518 (573)
Q Consensus 439 ~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEE 518 (573)
+-|-+.+|-.|..+..+|+.+...+..||....+++. ....+..|+.+...|+++
T Consensus 12 in~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~-------------------------l~~~~~~~~~e~~~L~~~ 66 (154)
T 2ocy_A 12 VDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNT-------------------------LKRELSDRDDEVKRLRED 66 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH-------------------------HHTHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHhhhhHHHHHHHHH
Confidence 3455666666666666666666666666654443332 111234567777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008232 519 IANEKEKIKELQQCLARI 536 (573)
Q Consensus 519 la~eK~Kl~~l~qel~qa 536 (573)
|..|+.+-.+..+++.++
T Consensus 67 l~~E~~~R~~aE~~~~~i 84 (154)
T 2ocy_A 67 IAKENELRTKAEEEADKL 84 (154)
T ss_dssp HHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777666655554444443
No 42
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.76 E-value=7.7 Score=34.70 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 008232 442 LSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEA 479 (573)
Q Consensus 442 LsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEA 479 (573)
|.|+|.- -..++..+++.+..||.+.+.+|.+|+.
T Consensus 68 l~e~e~~---~~~~l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 68 LEETKGR---YCMQLAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444442 2457888899999999999999999974
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=66.47 E-value=1.3e+02 Score=31.33 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=37.4
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 008232 444 EMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKK 500 (573)
Q Consensus 444 EmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk 500 (573)
++|+...++....+..-..+++|+.||+.++.+++-....-.+.-+..+++..|+..
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQN 481 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHH
Confidence 445555555566666666677777777777777777777666666666666666543
No 44
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=65.15 E-value=1.4e+02 Score=31.50 Aligned_cols=20 Identities=5% Similarity=0.267 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008232 497 REKKCLKRLLAWEKQKAKLQ 516 (573)
Q Consensus 497 kekk~lkkl~~WEkQK~~LQ 516 (573)
.-...+..+|..|.+++..-
T Consensus 225 ~~~~~~~~lQ~lEeeRi~~l 244 (486)
T 3haj_A 225 NMEQVFEQCQQFEEKRLRFF 244 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666655444
No 45
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=64.36 E-value=9.2 Score=42.07 Aligned_cols=149 Identities=17% Similarity=0.238 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhh---HHhhHHHHHHHHHhhhhhhhh
Q 008232 382 IKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDT---TMKRLSEMENALRKASGQVDR 458 (573)
Q Consensus 382 v~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~---T~KrLsEmEnAl~kas~Qldr 458 (573)
|+-++.|-+|.+ ++|-|+- .||.+++..=...-++++|.++. -+.+||. +..-|.+.|.....---++.+
T Consensus 302 ~qqm~~~a~e~~---~~~~~e~-~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~ 374 (575)
T 2i1j_A 302 VQQMKAQAREEK---LAKQAQR-EKLQLEIAARERAEKKQQEYQDR---LRQMQEEMERSQANLLEAQDMILRLEEQLRQ 374 (575)
T ss_dssp HHHHHHHHHHHH---HHHHHHH-TTCCSCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455556665554 3444444 45666655544444445544433 2333444 335566666666666677777
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 459 ANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKR-------LLAWEKQKAKLQEEIANEKEKIKELQQ 531 (573)
Q Consensus 459 Ana~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkk-------l~~WEkQK~~LQEEla~eK~Kl~~l~q 531 (573)
|.....+|+.+..+...+|+.-+.++.-++..=..+..+-...-.. .+.=+.+...||+|+..-+....+.++
T Consensus 375 ~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~ 454 (575)
T 2i1j_A 375 LQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAA 454 (575)
T ss_dssp -------------------------------------------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888777777777776666555544333222221111111 122234555666666666666655555
Q ss_pred HHHHHH
Q 008232 532 CLARIQ 537 (573)
Q Consensus 532 el~qak 537 (573)
+|..+.
T Consensus 455 ~l~~~~ 460 (575)
T 2i1j_A 455 ALLAAT 460 (575)
T ss_dssp HHHTTS
T ss_pred HHHHhc
Confidence 555433
No 46
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=64.14 E-value=13 Score=37.15 Aligned_cols=74 Identities=16% Similarity=0.247 Sum_probs=44.4
Q ss_pred HhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhh
Q 008232 406 KLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLS 483 (573)
Q Consensus 406 rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~ 483 (573)
.|..-+++|...+.+.+..+.|.+..-. +...+.+.+.++..+..|++.+.+.++.++.+....+..++-..+.
T Consensus 85 ~l~~a~~~~~~a~~~~~r~~~L~~~~~~----s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~ 158 (369)
T 4dk0_A 85 QLVARKTAYDVALSNYQRLSKLYGQKAT----SLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKIT 158 (369)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHGGGSSCS----CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEE
Confidence 3444455666666666655555443221 3456777777787777777777777766666665555555444443
No 47
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=63.78 E-value=70 Score=27.42 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQQ 531 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~q 531 (573)
|++.-|.+...+++.|..-+.|+-.-.+
T Consensus 52 k~~~lE~eld~~ee~L~ea~~kLee~ek 79 (101)
T 3u1c_A 52 QLRVTEDSRDQVLEELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333
No 48
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=63.78 E-value=47 Score=27.75 Aligned_cols=50 Identities=26% Similarity=0.375 Sum_probs=34.7
Q ss_pred HHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 008232 423 ETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEA 479 (573)
Q Consensus 423 e~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEA 479 (573)
|++.||..+..|| .+|.|+|.-. ..|++..+..+-.||.+.+.+|.+|+.
T Consensus 4 eie~L~~q~~~Le----~~l~e~E~~~---~~~l~~~q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 4 QLSQLQCQLAAKE----AKLRDLEDSL---ARERDTSRRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp --------CTTHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666566665 4578888854 568999999999999999999999974
No 49
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=63.24 E-value=1e+02 Score=29.19 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=34.7
Q ss_pred HHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 416 MLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 416 ~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
.||.|-|-+.|+||---.+ .|-++..|-+++-...-+....+.--.||-+.+.|.++++.-+
T Consensus 21 kLk~EsE~~~rlkK~~tEl----~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 21 LLRTESDTAVRLRKSHTEM----SKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777632211 2334444444444444444444455556667777777776655
No 50
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=63.14 E-value=1.1e+02 Score=29.40 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcHHHHHHHHhhHH
Q 008232 381 QIKDLERQVKERKEWAHQKAMQAA-RKLSNDLTELKMLRMERE 422 (573)
Q Consensus 381 rv~eLq~qlkewtdWA~qKvmQaa-~rL~kd~~ELk~LR~Eke 422 (573)
|.+.++..+++-.+|-.++--+.. .-.++|+++++.|-++++
T Consensus 4 ~~~~F~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~ 46 (322)
T 1u4q_A 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQ 46 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHH
Confidence 567788889999999887765543 246889999998888776
No 51
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=62.53 E-value=84 Score=27.87 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=47.7
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 008232 461 AAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQ 540 (573)
Q Consensus 461 a~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q 540 (573)
....+|..|...|..++++-+=...+...-|-.+.++....-.++.-.+....-..+....--.+-..+++++...+...
T Consensus 41 ~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 41 EKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777776666667777777666666655555555554444444443333333344445554444444
Q ss_pred Hhhhh
Q 008232 541 KETEV 545 (573)
Q Consensus 541 ~q~E~ 545 (573)
...|.
T Consensus 121 ed~e~ 125 (129)
T 2fxo_A 121 DDLEL 125 (129)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 44443
No 52
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=61.33 E-value=77 Score=27.08 Aligned_cols=87 Identities=13% Similarity=0.286 Sum_probs=63.1
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 445 MENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKE 524 (573)
Q Consensus 445 mEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~ 524 (573)
++.+|.+...+=.++-.....||.+.+.+..|+++....+ ..+-..|.+..+..-.-..|.+-+|+|+..-..
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~-------~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~ 81 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEA-------ERLDQEEAQYQREYSEFKRQQLELDDELKSVEN 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566677788888888888887766432 234456666667777777888999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 008232 525 KIKELQQCLARIQQ 538 (573)
Q Consensus 525 Kl~~l~qel~qak~ 538 (573)
++.-.+.+|.+.++
T Consensus 82 q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 82 QMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc
Confidence 99999988887653
No 53
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=60.72 E-value=91 Score=27.70 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHH
Q 008232 375 VVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMERE 422 (573)
Q Consensus 375 il~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Eke 422 (573)
+-+|..++.-|..++-+|++=.++---++-.-.+.-+.||..||.+++
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~ 52 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKE 52 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888875544444444455555666666666665
No 54
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=60.34 E-value=76 Score=33.73 Aligned_cols=84 Identities=13% Similarity=0.162 Sum_probs=48.5
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhH---HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 464 RRLETENAEIRAEMEASKLSAAESV---TTCLEVAKREKKCLKR--------LLAWEKQKAKLQEEIANEKEKIKELQQC 532 (573)
Q Consensus 464 rrLE~ena~lr~EmEAaKL~A~ES~---~sc~e~~kkekk~lkk--------l~~WEkQK~~LQEEla~eK~Kl~~l~qe 532 (573)
|.++..+..|+.+++.-+-.-.++. ++..+++|+..+..+. ....|++.+-||+-+.++=..|..||..
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5555555555555555444433333 3333333333332222 2356777777777777777777777777
Q ss_pred HHHHHhHhHhhhhhh
Q 008232 533 LARIQQDQKETEVRL 547 (573)
Q Consensus 533 l~qak~~q~q~E~~~ 547 (573)
|.....-.+.+|..+
T Consensus 143 l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 143 VRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777776667777666
No 55
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=59.49 E-value=25 Score=29.78 Aligned_cols=42 Identities=29% Similarity=0.289 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhHhHhhhhhhhhcc
Q 008232 510 KQKAKLQEEIANEKEKIKE--------------LQQCLARIQQDQKETEVRLICLF 551 (573)
Q Consensus 510 kQK~~LQEEla~eK~Kl~~--------------l~qel~qak~~q~q~E~~~~~~~ 551 (573)
---.+||.||.+.|+|-.. |.++.+|.++.+...+.|++-|.
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888777766 55566667777777777777654
No 56
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=59.47 E-value=1.1e+02 Score=28.43 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=46.8
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhhhhHHH---HHHHHHhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 445 MENALRKASGQVDRANAAVRRLETENAEI---RAEMEASKLSAAESVTTC----LEVAKREKKCLKRLLAWEKQKAKLQE 517 (573)
Q Consensus 445 mEnAl~kas~QldrAna~vrrLE~ena~l---r~EmEAaKL~A~ES~~sc----~e~~kkekk~lkkl~~WEkQK~~LQE 517 (573)
+|..|.+|-..++.|.+-++.||.+.-.. .+-||++--.+++-...+ -.+..+=|..=.|..-=|+.-.+||.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888765443 233444444444332222 22222333333444455555555555
Q ss_pred HHHHHHHHHHH
Q 008232 518 EIANEKEKIKE 528 (573)
Q Consensus 518 Ela~eK~Kl~~ 528 (573)
+|..--.+|..
T Consensus 106 ~id~lEd~L~~ 116 (155)
T 2efr_A 106 SIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 57
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=59.13 E-value=2e+02 Score=32.04 Aligned_cols=152 Identities=15% Similarity=0.173 Sum_probs=77.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHH-HHHHh---hhcHHH--------
Q 008232 368 DDQKDEIVVTMLHQIKDLERQVKERK----------------------EWAHQKAMQ-AARKL---SNDLTE-------- 413 (573)
Q Consensus 368 ~D~KdEmil~Lv~rv~eLq~qlkewt----------------------dWA~qKvmQ-aa~rL---~kd~~E-------- 413 (573)
.++|+++|...+.++.++..++...- +|++.=-.+ ...+| -+++.+
T Consensus 377 ~e~k~~lvr~~~~~~~~~~~~l~~~L~~l~LP~~l~~l~~~~lP~~l~~~~~~i~~~~g~~~l~~~~~~l~~l~~~~~~~ 456 (704)
T 2xs1_A 377 NQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREI 456 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHCSSTTSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHhcCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 57889999888888888777776543 222211110 01111 112221
Q ss_pred ----HHHHHhhHHHHHHhhhhcc---cchhh------HHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHH---HHH
Q 008232 414 ----LKMLRMEREETQRLKKGKQ---TLEDT------TMKRLSEMENALRKASGQVDRANAAVRRLETENAEIR---AEM 477 (573)
Q Consensus 414 ----Lk~LR~Ekee~~rlkKeKq---~lEe~------T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr---~Em 477 (573)
-+.|.+|..|-++++..-. +...+ =+.++..++..|.+|+.=-+.....++.-+.....|. .|+
T Consensus 457 L~e~~~~L~~E~~ed~~~R~k~g~~w~r~~S~~~~~~l~~~~~~~~~~l~~A~~sD~~v~~~~~~~~~~l~~L~~~~~~l 536 (704)
T 2xs1_A 457 LDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPEL 536 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 2346666666666555222 22222 2688888888888886422222222222222222221 233
Q ss_pred HHh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 478 EAS--KLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIA 520 (573)
Q Consensus 478 EAa--KL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla 520 (573)
+++ +.... +.....+..++=+..|+++...+.|+..+-+||.
T Consensus 537 ~~~~p~~~~~-~~~~~~~~~~~L~~~l~~l~~l~~~R~~~~~~lk 580 (704)
T 2xs1_A 537 NAAIPSANPA-KTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLK 580 (704)
T ss_dssp HHTSCCCCCC-GGGSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCccCCCc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 11100 1111224566677788888888888888887764
No 58
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=57.92 E-value=1.1e+02 Score=27.97 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=36.3
Q ss_pred HHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHH
Q 008232 415 KMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEV 494 (573)
Q Consensus 415 k~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~ 494 (573)
....+.-+|.+|..|--..-+...-.|+..+|..|+-|....+-|+--.....-..+.+-.+++.|.=+|-.+...|.++
T Consensus 27 eeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eL 106 (147)
T 2b9c_A 27 EEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAEL 106 (147)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445554444322211222224555555555555555554444444444444444444444444444444444444
Q ss_pred HH
Q 008232 495 AK 496 (573)
Q Consensus 495 ~k 496 (573)
-.
T Consensus 107 Ee 108 (147)
T 2b9c_A 107 EE 108 (147)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 59
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=56.64 E-value=14 Score=30.53 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHhcCcHHHhhhhCcC
Q 008232 167 SLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSIEIP 207 (573)
Q Consensus 167 SL~GLVafL~~~fP~LS~~dAm~yLLlADadLl~A~a~~~~ 207 (573)
-|..+|..++..||+|..+-+..||.-.|-|+..++..--.
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 35689999999999999999999999999999888775544
No 60
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=56.50 E-value=18 Score=30.12 Aligned_cols=49 Identities=24% Similarity=0.406 Sum_probs=34.3
Q ss_pred HHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHh
Q 008232 425 QRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEAS 480 (573)
Q Consensus 425 ~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAa 480 (573)
+.++.-+..||. .|.|+|.-. ..++..++..+..||.+.+.+|.+|+.-
T Consensus 4 ~~l~~~~~sLE~----~l~e~e~~~---~~~~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 4 DALKGTNESLER----QMREMEENF---AVEAANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445543 456666554 4578888999999999999999999653
No 61
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.44 E-value=38 Score=29.54 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=13.5
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHH
Q 008232 455 QVDRANAAVRRLETENAEIRAEME 478 (573)
Q Consensus 455 QldrAna~vrrLE~ena~lr~EmE 478 (573)
+++++.-.+++|+.+++....|+.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~ 29 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVK 29 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 455555666666666665444443
No 62
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=54.26 E-value=84 Score=27.36 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=17.7
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHH
Q 008232 444 EMENALRKASGQVDRANAAVRRLETENAEIRAEM 477 (573)
Q Consensus 444 EmEnAl~kas~QldrAna~vrrLE~ena~lr~Em 477 (573)
+...+|..+..+++.+..-...|+....+.+.++
T Consensus 23 ~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~ 56 (150)
T 3ajw_A 23 DAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNL 56 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555554444
No 63
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=53.71 E-value=68 Score=28.60 Aligned_cols=76 Identities=18% Similarity=0.276 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHhh---hhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 441 RLSEMENALRKASGQVDRANAAVRRLET---ENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQE 517 (573)
Q Consensus 441 rLsEmEnAl~kas~QldrAna~vrrLE~---ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQE 517 (573)
+|..-|.+|.+...++|.....+.+++. .+.-|+++++.=+- .|++=..-+-++++
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~---------------------DF~aERadREkl~~ 90 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKA---------------------DFQAERHAREKLVE 90 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHccchhhHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008232 518 EIANEKEKIKELQQCLARIQ 537 (573)
Q Consensus 518 Ela~eK~Kl~~l~qel~qak 537 (573)
|+..-...|..||+++.+.+
T Consensus 91 eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 91 KKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhcC
No 64
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=51.45 E-value=13 Score=28.81 Aligned_cols=27 Identities=37% Similarity=0.634 Sum_probs=22.1
Q ss_pred hHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhh
Q 008232 437 TTMKRLSEMENALRKASGQVDRANAAVRRLETEN 470 (573)
Q Consensus 437 ~T~KrLsEmEnAl~kas~QldrAna~vrrLE~en 470 (573)
+++|++.|+|.-|+|+. -.+.+||-||
T Consensus 11 ~~Rkk~eeler~lrk~k-------k~iKklEdeN 37 (50)
T 1a92_A 11 SGRKKLEELERDLRKLK-------KKIKKLEEDN 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHhhhccC
Confidence 47899999999999876 5677888776
No 65
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=49.95 E-value=11 Score=37.14 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=28.4
Q ss_pred hhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhh
Q 008232 407 LSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLET 468 (573)
Q Consensus 407 L~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ 468 (573)
|..-+++|...+.+.+..+.|.+..-. +...+.+.+.++..+..|++.+.+.+..++.
T Consensus 85 l~~a~~~~~~a~~~~~r~~~L~~~~~~----s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a 142 (341)
T 3fpp_A 85 RQQAEAELKLARVTYSRQQRLAQTQAV----SQQDLDNAATEMAVKQAQIGTIDAQIKRNQA 142 (341)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTSSS----TTHHHHHHHHHHHHTHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555332211 3345555566665555555555544444433
No 66
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.75 E-value=1.4e+02 Score=26.38 Aligned_cols=49 Identities=10% Similarity=0.244 Sum_probs=8.5
Q ss_pred cccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 008232 431 KQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEA 479 (573)
Q Consensus 431 Kq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEA 479 (573)
++.+|.--..|+.|+.....+-+..|..+..-+.+|...+..|+.|+++
T Consensus 6 r~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~ 54 (129)
T 3tnu_B 6 RTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDN 54 (129)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666555555544444444444443333334444333
No 67
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=49.57 E-value=55 Score=25.26 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 505 LLAWEKQKAKLQEEIANEKEKIKELQQCLARI 536 (573)
Q Consensus 505 l~~WEkQK~~LQEEla~eK~Kl~~l~qel~qa 536 (573)
.+--||+-..|.++|..+|.|...++++|.|+
T Consensus 14 V~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 14 VARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34457888899999999999999999999885
No 68
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=48.20 E-value=1.9e+02 Score=31.47 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=28.3
Q ss_pred HHHHHhhHHHH-HHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHH
Q 008232 414 LKMLRMEREET-QRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAE 472 (573)
Q Consensus 414 Lk~LR~Ekee~-~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~ 472 (573)
+|-+|...|.+ +.+++-.-........++.+++...+.+..++|..++.--.+..++..
T Consensus 43 ~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 43 MESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555553 333333221111234566677777776666655554444444444333
No 69
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=47.15 E-value=13 Score=37.11 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 008232 515 LQEEIANEKEKIKELQQCLARIQQD 539 (573)
Q Consensus 515 LQEEla~eK~Kl~~l~qel~qak~~ 539 (573)
.+.++..-+..|.+++.+|.+++..
T Consensus 127 a~a~~~~~~~~l~~~~~~l~~a~~~ 151 (369)
T 4dk0_A 127 AKAEMDVVQENIKQAEIEVNTAETN 151 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555554433
No 70
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=46.27 E-value=1e+02 Score=31.93 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhh
Q 008232 380 HQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRA 459 (573)
Q Consensus 380 ~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrA 459 (573)
...+.||++|-+-.+=-.|---||+--=-.=.+-..+|.+++-..+ ||+.|+|+.+.+...||+-+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ--------------KKVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHH
Q 008232 460 NAAVRRL 466 (573)
Q Consensus 460 na~vrrL 466 (573)
.+.|.|+
T Consensus 463 ~~~~~~~ 469 (471)
T 3mq9_A 463 SAEVERL 469 (471)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
No 71
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=45.98 E-value=1.7e+02 Score=26.41 Aligned_cols=39 Identities=26% Similarity=0.441 Sum_probs=29.4
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHH
Q 008232 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEM 477 (573)
Q Consensus 439 ~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~Em 477 (573)
.|++.|++..|..-..+|..|-+.|.||..+|-.+..-.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 457888888888888888888888887777776655443
No 72
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.94 E-value=1.2e+02 Score=27.86 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=47.9
Q ss_pred HhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhh
Q 008232 406 KLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAA 485 (573)
Q Consensus 406 rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ 485 (573)
.|+.-...++.|-..+++..+++++...+++. +.+...++.+....-..-|.++..|..|+|- |+|
T Consensus 16 ~l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e-----------~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~--LTa- 81 (135)
T 2e7s_A 16 TIASQKAAIENYNQLKEDYNTLKRELSDRDDE-----------VKRLREDIAKENELRTKAEEEADKLNKEVED--LTA- 81 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHH-----------HHTHHHHHHHTTSHHHHHHHTTHHHHHHHHH--HHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-
Confidence 44444555555555666666666554333332 3333344444444444444445555555442 221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 486 ESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 486 ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
.=+-|+=+---..-+.-..-|+.-..|++.|.+-..-|.-+|.+|+..|.
T Consensus 82 ---sLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 82 ---SLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp ---HHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222211111112222344555667777777777777777777766554
No 73
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.84 E-value=1.6e+02 Score=26.05 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=9.0
Q ss_pred cccchhhHHhhHHHHHHHHHhhhhh-------hhhhhHHHHHHhhhhHHHHH
Q 008232 431 KQTLEDTTMKRLSEMENALRKASGQ-------VDRANAAVRRLETENAEIRA 475 (573)
Q Consensus 431 Kq~lEe~T~KrLsEmEnAl~kas~Q-------ldrAna~vrrLE~ena~lr~ 475 (573)
++.+|.--..|+.|+.....+-+.. +-..+..+++|+.|+..++.
T Consensus 8 r~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~ 59 (131)
T 3tnu_A 8 RKDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLS 59 (131)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445566665544444433 44444455555555444443
No 74
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=45.19 E-value=1.5e+02 Score=31.60 Aligned_cols=94 Identities=17% Similarity=0.232 Sum_probs=45.6
Q ss_pred hhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH----HHHHHHHHH
Q 008232 435 EDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKC----LKRLLAWEK 510 (573)
Q Consensus 435 Ee~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~----lkkl~~WEk 510 (573)
|-++.+.|.|||+.|...+ +..+.+..+-.- |+.-+-.+.-+........-+-+++.... -.-+..-+.
T Consensus 33 e~~V~~~l~~L~~~l~~is----n~Ts~~~~~v~~---ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~ 105 (411)
T 3ghg_C 33 QTKVDKDLQSLEDILHQVE----NKTSEVKQLIKA---IQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDS 105 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHH----hhhhHHHHHHHH---HHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 5567788999998887554 333333333332 22222222222222112222222222222 222333456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 511 QKAKLQEEIANEKEKIKELQQCLAR 535 (573)
Q Consensus 511 QK~~LQEEla~eK~Kl~~l~qel~q 535 (573)
|...||+-+..-.+||.+|.+.+.+
T Consensus 106 ~i~~l~~~~~~~~~~i~~L~~~v~~ 130 (411)
T 3ghg_C 106 SIRYLQEIYNSNNQKIVNLKEKVAQ 130 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777776666666655555544
No 75
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=44.65 E-value=79 Score=33.75 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=30.3
Q ss_pred HHHHHhhHHHHHHhhhhcccch-hhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhh
Q 008232 414 LKMLRMEREETQRLKKGKQTLE-DTTMKRLSEMENALRKASGQVDRANAAVRRLET 468 (573)
Q Consensus 414 Lk~LR~Ekee~~rlkKeKq~lE-e~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ 468 (573)
+|-+|...|.+.+--+-+...+ .+...++.++...-++...++|..++.--.+..
T Consensus 4 ~~~~r~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk 59 (455)
T 2dq0_A 4 IKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAV 59 (455)
T ss_dssp HHHHHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667776666554433333212 234577777777777777665554444333333
No 76
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=42.46 E-value=1.7e+02 Score=25.40 Aligned_cols=64 Identities=25% Similarity=0.305 Sum_probs=43.8
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQ 516 (573)
Q Consensus 439 ~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQ 516 (573)
+|.-.|+|++|..--+|-+.-|-.++.|++.+-+.=+-++--|+--.+=.. |+--.||.|+.|.
T Consensus 24 ~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~--------------RLsKtEKDkAiLE 87 (101)
T 1d7m_A 24 IKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEA--------------RLAKTEKDRAILE 87 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH--------------HHhhhhhHHHHHH
Confidence 455567778888888888888888888888777766666655554333332 6666778887775
No 77
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.37 E-value=1e+02 Score=34.14 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 008232 372 DEIVVTMLHQIKDLERQVKER 392 (573)
Q Consensus 372 dEmil~Lv~rv~eLq~qlkew 392 (573)
|+.=.+|-++|.||.++|.+-
T Consensus 56 dkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred HhhcCcHHHHHHHHHHHHHHH
Confidence 444566777777777777654
No 78
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=41.94 E-value=91 Score=24.92 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=37.5
Q ss_pred HHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHh
Q 008232 414 LKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEAS 480 (573)
Q Consensus 414 Lk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAa 480 (573)
|.-+|.+-|+.- .|-++.+|.--..|+.|+.....+-+..|..+..-+.+|.....-|..|+++.
T Consensus 11 l~eiRaQYE~ia--~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 11 MRDVRQQYESVA--AKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666443 33455566666677888777666666665555555555554444555555443
No 79
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=41.78 E-value=21 Score=35.81 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 497 REKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 497 kekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
|-+...+.+...+.|..+|.++|..-+++|.+|++|+++.++
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334455677888888889999999999999999999998764
No 80
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.71 E-value=1.6e+02 Score=24.93 Aligned_cols=59 Identities=25% Similarity=0.360 Sum_probs=34.4
Q ss_pred HHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 008232 462 AVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQK 541 (573)
Q Consensus 462 ~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~ 541 (573)
-||-||.+|+.|..+.+.-+ . ++.. .-..+.+.+|..-+.+|..+..+-+++.-..+
T Consensus 24 KVR~LEqqN~~Le~~i~~l~--~------------~~~~---------~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~d 80 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLK--G------------QGKS---------RLGDLYEEEMRELRRQVDQLTNDKARVEVERD 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--H------------HHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh--h------------ccCC---------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999976654322 1 1110 11234666677666666666666655554444
Q ss_pred hh
Q 008232 542 ET 543 (573)
Q Consensus 542 q~ 543 (573)
.+
T Consensus 81 nl 82 (93)
T 3s4r_A 81 NL 82 (93)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 81
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=41.49 E-value=44 Score=31.92 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 506 LAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (573)
Q Consensus 506 ~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak 537 (573)
..-+++-..|++||..+|+|-..++++|.|.=
T Consensus 138 ~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl 169 (175)
T 3mud_A 138 AKNEKSIDDLEEKVAHAKEENLNMHQMLDQTL 169 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457889999999999999999999998753
No 82
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=40.04 E-value=76 Score=27.77 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=35.8
Q ss_pred HhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHh--hhhhhhh------------hhHHHHHHhhhhH
Q 008232 406 KLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRK--ASGQVDR------------ANAAVRRLETENA 471 (573)
Q Consensus 406 rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~k--as~Qldr------------Ana~vrrLE~ena 471 (573)
.+.+-+.++.+|++|++ +|++ ++.++|-.|.+ -.|.-|. |..+-+..+.+..
T Consensus 13 ~~~~lr~ei~~Le~E~~---rLr~-----------~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e 78 (100)
T 1go4_E 13 EADTLRLKVEELEGERS---RLEE-----------EKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHS 78 (100)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHH-----------HHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHH-----------HHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHH
Confidence 34455566667776665 4433 34444444544 3344444 4445556677777
Q ss_pred HHHHHHHHhhh
Q 008232 472 EIRAEMEASKL 482 (573)
Q Consensus 472 ~lr~EmEAaKL 482 (573)
.|++|+|.-|.
T Consensus 79 ~Lq~E~erLr~ 89 (100)
T 1go4_E 79 QLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78887776543
No 83
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=39.60 E-value=1.7e+02 Score=24.73 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhh
Q 008232 512 KAKLQEEIANEKEKIKELQQCLARIQQDQKETEV 545 (573)
Q Consensus 512 K~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~ 545 (573)
-..|++|+..-...+..+++.|..+.+.-.+.|+
T Consensus 53 iq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 53 LKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555554455555555555555554444444
No 84
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=39.29 E-value=3.3e+02 Score=27.87 Aligned_cols=133 Identities=15% Similarity=0.087 Sum_probs=69.6
Q ss_pred HHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchh----------------------hHHhhHHHHHHHHHhhhhhhh
Q 008232 400 AMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLED----------------------TTMKRLSEMENALRKASGQVD 457 (573)
Q Consensus 400 vmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe----------------------~T~KrLsEmEnAl~kas~Qld 457 (573)
+-++...|..+-..+..|++|.+..+.-=+.-+.++. .++|++-+|+..|.....+++
T Consensus 164 ~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~~~~~~i~~~~~~~~g~~i~~~i~Ggi~a~~a~k~~~~~~~ei~~l~~~i~ 243 (346)
T 2nrj_A 164 KELLQSILKNQGADVDADQKRLEEVLGSVNYYKQLESDGFNVMKGAILGLPIIGGIIVGVARDNLGKLEPLLAELRQTVD 243 (346)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHTGGGCGGGCCC--CCGGGTSCEEEEEETTTEEEEEEGGGHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhccccccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555566666666543333222222222 125888888888888877775
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q 008232 458 RANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKEL-----QQC 532 (573)
Q Consensus 458 rAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l-----~qe 532 (573)
.+...+.-|..= -.++..+...=.....-++.+..+-..+-.++..-...|... ..+
T Consensus 244 ~~~~l~~~l~~~------------------~~~~~~l~~~I~~Ai~al~~l~~~W~~m~~~~~~l~~~I~~~~~~i~~~~ 305 (346)
T 2nrj_A 244 YKVTLNRVVGVA------------------YSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVLGHIENAAQKADQNK 305 (346)
T ss_dssp HHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTT
T ss_pred HHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHH
Confidence 555444333321 122333334444445556666667777777766655555552 233
Q ss_pred HHHHHhHhHhhhhhhhhc
Q 008232 533 LARIQQDQKETEVRLICL 550 (573)
Q Consensus 533 l~qak~~q~q~E~~~~~~ 550 (573)
+.-++..=+.+...|+-+
T Consensus 306 ~~~i~~~L~~a~~~W~~l 323 (346)
T 2nrj_A 306 FKFLKPNLNAAKDSWKTL 323 (346)
T ss_dssp TGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 333333344455566554
No 85
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.31 E-value=1.6e+02 Score=23.99 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=43.5
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 439 MKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEE 518 (573)
Q Consensus 439 ~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEE 518 (573)
.||+.-|++...+|..+++.++.-+...+.....+-.| +.+..+--..|++|
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~e----------------------------v~~L~kKiq~lE~e 56 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDE----------------------------LVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----------------------------HHHHHHHHHHHHHH
Confidence 46777777777777777777776666655433222222 22333344456666
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 008232 519 IANEKEKIKELQQCLARIQQD 539 (573)
Q Consensus 519 la~eK~Kl~~l~qel~qak~~ 539 (573)
|..-.+.+...+..|..+.+.
T Consensus 57 ld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 57 LDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666777777666543
No 86
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=38.01 E-value=1.3e+02 Score=26.61 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 008232 516 QEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 516 QEEla~eK~Kl~~l~qel~qak~ 538 (573)
|.+.++-+.||++|+++|+-+-.
T Consensus 81 ~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 81 RAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888899999988887654
No 87
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=37.43 E-value=3.5e+02 Score=28.14 Aligned_cols=55 Identities=13% Similarity=0.296 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhccccccccc
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLICLFPWFSTHK 558 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~~~~~~~~~ 558 (573)
|++.-...+.+|+++|..++...-++.+++..+|=---|+-..--+..-|+..+.
T Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~~g 267 (373)
T 3hhm_B 213 RISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKG 267 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHcC
Confidence 4555677788888888888887777777777555444444333333444554443
No 88
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.32 E-value=1.5e+02 Score=24.94 Aligned_cols=71 Identities=11% Similarity=0.289 Sum_probs=45.0
Q ss_pred HHHHHHHHhhHHHHHHhhhhcccchhhHH--hhH------HHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 411 LTELKMLRMEREETQRLKKGKQTLEDTTM--KRL------SEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 411 ~~ELk~LR~Ekee~~rlkKeKq~lEe~T~--KrL------sEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
...+..|..++.|++...+|-..|++++. +-+ ...+.|+..-...++.....+.+|+.+...++.+|+..|
T Consensus 26 ~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 26 VQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788888888888888888887641 111 123344444444455556677777777777777776544
No 89
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=36.89 E-value=2.4e+02 Score=25.47 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcHHHHHHHHhhHH
Q 008232 381 QIKDLERQVKERKEWAHQKAMQAAR-KLSNDLTELKMLRMERE 422 (573)
Q Consensus 381 rv~eLq~qlkewtdWA~qKvmQaa~-rL~kd~~ELk~LR~Eke 422 (573)
+.+.++..+.+-.+|-.++--+.+. -+++|++..+.|-+.++
T Consensus 4 ~~~~F~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~ 46 (216)
T 1u5p_A 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQ 46 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence 5667778888888898877655543 37888888888877665
No 90
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=36.85 E-value=2.8e+02 Score=30.49 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=37.1
Q ss_pred hHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhh
Q 008232 437 TTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAE 486 (573)
Q Consensus 437 ~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~E 486 (573)
..+-.++-.|+++...+.||.+.+...+..+-......+|.+.++-++++
T Consensus 360 dArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~ 409 (602)
T 1cii_A 360 DARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSG 409 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556778888888888888888888888777777777777776555533
No 91
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=36.73 E-value=1.9e+02 Score=24.19 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhh
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLS 483 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~ 483 (573)
+-+..|+-.+.++...+++.......||..+..+-.|.-.--++
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777788888888888877777777766666665544444
No 92
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=36.47 E-value=54 Score=27.59 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak 537 (573)
...+.||+-.-|.++|..+|.|...++++|.|+=
T Consensus 38 ~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL 71 (77)
T 3mtu_E 38 NYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTL 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999998764
No 93
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.89 E-value=1.5e+02 Score=24.64 Aligned_cols=71 Identities=10% Similarity=0.158 Sum_probs=46.2
Q ss_pred HHHHHHHHhhHHHHHHhhhhcccchhhHH--hhH------HHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhh
Q 008232 411 LTELKMLRMEREETQRLKKGKQTLEDTTM--KRL------SEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASK 481 (573)
Q Consensus 411 ~~ELk~LR~Ekee~~rlkKeKq~lEe~T~--KrL------sEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaK 481 (573)
...+..|..++.|++...+|-..|++++. +-+ ...+.|+..-...++.....+.+|+.+...++.+|+..|
T Consensus 21 ~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 21 SVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888887741 110 123334444444455555777778888888877777654
No 94
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=35.21 E-value=2.5e+02 Score=29.89 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 510 KQKAKLQEEIANEKEKIKELQQCL 533 (573)
Q Consensus 510 kQK~~LQEEla~eK~Kl~~l~qel 533 (573)
.+-..||+-|...+.||.+|++.+
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i 128 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKI 128 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444444433
No 95
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=34.86 E-value=2.4e+02 Score=25.02 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhh---------cccchhhHHhhHHHH
Q 008232 375 VVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKG---------KQTLEDTTMKRLSEM 445 (573)
Q Consensus 375 il~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKe---------Kq~lEe~T~KrLsEm 445 (573)
|-.|+.==++-+.-|.+=..+-.+|+.||-.- =..|+...|+++|.-.+.+.. -..+|..|..+|.+|
T Consensus 12 IQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~E---A~~EIe~yR~qkE~eFk~~e~~~~g~~~~~~~~~e~eT~~ki~~i 88 (119)
T 4efa_G 12 IATLLQAEKEAHEIVSKARKYRQDKLKQAKTD---AAKEIDSYKIQKDKELKEFEQKNAGGVGELEKKAEAGVQGELAEI 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHC---------CTTSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 33444444444445555556666666666322 245677788888866554432 234667788999999
Q ss_pred HHHHHhhhhhh
Q 008232 446 ENALRKASGQV 456 (573)
Q Consensus 446 EnAl~kas~Ql 456 (573)
.....+-..+|
T Consensus 89 ~~~~~~~k~~V 99 (119)
T 4efa_G 89 KKIAEKKKDDV 99 (119)
T ss_dssp HHHHHHTHHHH
T ss_pred HHHHHHhHHHH
Confidence 98888776554
No 96
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=34.72 E-value=1e+02 Score=28.93 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEI 473 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~l 473 (573)
|-+..+--++--..-|+..+....++|+.||..|
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666667777777777777554
No 97
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=34.26 E-value=2e+02 Score=24.08 Aligned_cols=61 Identities=25% Similarity=0.263 Sum_probs=42.5
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 464 RRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCL-KRLLAWEKQKAKLQEEIANEKEKIKELQQC 532 (573)
Q Consensus 464 rrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~l-kkl~~WEkQK~~LQEEla~eK~Kl~~l~qe 532 (573)
|||--++....+||++-|. -++=++.++.-| .-+.-.+.+++.|+..|...|.|..+|.+.
T Consensus 14 rrl~E~~~q~qaEl~sLrr--------T~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKR--------TEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHH--------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888876553 233344444433 345678889999999999999998887654
No 98
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=33.93 E-value=1.2e+02 Score=32.96 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=20.2
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhH
Q 008232 438 TMKRLSEMENALRKASGQVDRANAAVRRLETENA 471 (573)
Q Consensus 438 T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena 471 (573)
..-++.+++...+++..++|...+..-.+-.++.
T Consensus 31 ~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~ 64 (485)
T 3qne_A 31 LVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIG 64 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777666655544444444333
No 99
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=33.66 E-value=2.6e+02 Score=25.00 Aligned_cols=42 Identities=19% Similarity=0.474 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhhcHHHHHHHHhhHHH
Q 008232 382 IKDLERQVKERKEWAHQKAMQAA-RKLSNDLTELKMLRMEREE 423 (573)
Q Consensus 382 v~eLq~qlkewtdWA~qKvmQaa-~rL~kd~~ELk~LR~Ekee 423 (573)
+..+...+.+-.+|-.++--.++ .-+++|++.++.|.++++.
T Consensus 2 l~qf~~~~~~~~~Wl~e~e~~l~~~~~g~dl~~v~~ll~kh~~ 44 (213)
T 1cun_A 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKR 44 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHhcCcccCCCHHHHHHHHHHHHH
Confidence 34556667777788877654433 2356788888888777765
No 100
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=33.65 E-value=46 Score=30.43 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 008232 519 IANEKEKIKELQQCLA 534 (573)
Q Consensus 519 la~eK~Kl~~l~qel~ 534 (573)
..+||+|+++||-.-.
T Consensus 78 ~~eEKrkLAqLQ~AY~ 93 (130)
T 3cl3_D 78 ASEEKRKLAQLQVAYH 93 (130)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4558888888874433
No 101
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=33.45 E-value=38 Score=26.70 Aligned_cols=38 Identities=11% Similarity=-0.020 Sum_probs=32.6
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHhcCcHHHhhhhCcC
Q 008232 170 GMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSIEIP 207 (573)
Q Consensus 170 GLVafL~~~fP~LS~~dAm~yLLlADadLl~A~a~~~~ 207 (573)
.-+..|...||.++....-.-|..++-|+-.|+.+-..
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 55778999999999988888888899999999987654
No 102
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=33.15 E-value=82 Score=22.08 Aligned_cols=27 Identities=37% Similarity=0.429 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 512 KAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 512 K~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
.+-|..||++.|..|+.|.=|++..||
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566666666666666666555443
No 103
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=32.97 E-value=4.6e+02 Score=27.63 Aligned_cols=19 Identities=26% Similarity=0.386 Sum_probs=8.0
Q ss_pred HHHHHhhhc-HHHHHHHHhh
Q 008232 402 QAARKLSND-LTELKMLRME 420 (573)
Q Consensus 402 Qaa~rL~kd-~~ELk~LR~E 420 (573)
+.|..|..+ ...|+.+.+|
T Consensus 99 ~~a~~L~~~v~~~l~~~~~e 118 (486)
T 3haj_A 99 EVKASLMNDDFEKIKNWQKE 118 (486)
T ss_dssp HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 344445333 3344444443
No 104
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.71 E-value=52 Score=25.50 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHh
Q 008232 512 KAKLQEEIANEKEKIKELQQCLARIQQDQKE 542 (573)
Q Consensus 512 K~~LQEEla~eK~Kl~~l~qel~qak~~q~q 542 (573)
-..|+.|+++-|.|+..|.++++..+..-+|
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467778888888888888777776655444
No 105
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=32.07 E-value=64 Score=34.04 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHH
Q 008232 376 VTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKML 417 (573)
Q Consensus 376 l~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~L 417 (573)
-.|..|..+|+.+|.+-.=|.+++- +++|+++..+|+.+
T Consensus 20 ~~~~~r~~el~~~l~~p~~~~d~~~---~~~~~ke~~~l~~~ 58 (371)
T 1zbt_A 20 QAVEDRYEELGELLSDPDVVSDTKR---FMELSREEANSRET 58 (371)
T ss_dssp HHHHHHHHHC-----------------------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchhCHHH---HHHHHHHHHHHHHH
Confidence 3578899999999999888998654 34566766666543
No 106
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=31.68 E-value=3.2e+02 Score=25.49 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhh
Q 008232 505 LLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 505 l~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~ 547 (573)
+....+--..||+|+.+-+--+..+++.+.+.+.--+++=.||
T Consensus 91 l~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 91 IALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455567888888888777777777777766555555566
No 107
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=30.88 E-value=5.8e+02 Score=28.17 Aligned_cols=174 Identities=13% Similarity=0.189 Sum_probs=95.2
Q ss_pred CcccCCCCCCCCchhHHH-------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhh
Q 008232 358 NIDENLETITDDQKDEIV-------VT--MLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLK 428 (573)
Q Consensus 358 ~~D~~l~~vp~D~KdEmi-------l~--Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlk 428 (573)
+..+...|.|++..-|-| |+ =+.|.+ +.+-+-..||--.+=..+|+| |+...|+|.++++..=
T Consensus 266 nthDAII~FPe~Sg~ePlYISvs~ilt~~elkqrq--eee~r~~qew~~~hp~~~Aer------~~e~a~ael~~a~k~~ 337 (551)
T 2b5u_A 266 NTRDAVIRFPKDSGHNAVYVSVSDVLSPDQVKQRQ--DEENRRQQEWDATHPVEAAER------NYERARAELNQANEDV 337 (551)
T ss_dssp TEEEEEEECCGGGCCCCEEEEEEECCCHHHHHHHH--HHHHHHHHHHHHHCHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred CccceEEECCCCCCCCceEEEEeecCCHHHHHHHH--HHHHHHHHHhhhcCcHHHHHH------HHHHHHHHHHHHHHHH
Confidence 334445777876554432 21 122222 333344456765666666665 5778888888887776
Q ss_pred hhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008232 429 KGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAW 508 (573)
Q Consensus 429 KeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~W 508 (573)
..+|..-..|.+=+-+.-.||.-|+.+|-+|-+.+-.++.-|-.+ |+|= -+-.++.. + -.+|-+..++..
T Consensus 338 a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p---~~~G-h~~w~~~~--~-~~~~~~~dv~~~--- 407 (551)
T 2b5u_A 338 ARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDP---MAGG-HRMWQMAG--L-KAQRAQTDVNNK--- 407 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCT---TSTH-HHHHHHHH--H-HHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccCh---hhcc-chhhhhcc--c-hhhhhhhhhhhH---
Confidence 666665556777776666667666666666666555555333211 1111 01111111 1 112223334433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhh
Q 008232 509 EKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLIC 549 (573)
Q Consensus 509 EkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~ 549 (573)
+.+-..+.+|+.+-+.-|.-+.+.-.|.+.-.+-.|.++..
T Consensus 408 ~a~~d~~~~~~s~~~~~ls~~me~Rkq~e~k~k~ae~kl~~ 448 (551)
T 2b5u_A 408 QAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAENNLND 448 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccchhhhhhhhhhccch
Confidence 55666777788777777776666555555555556665544
No 108
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=30.40 E-value=1.1e+02 Score=30.16 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=40.3
Q ss_pred HHHhhhhcccchhhHHhhHHHHHHHHHhhhhh------------hhhhhHHHHHHhhhhHHHHHHHHHhhhhhhhh
Q 008232 424 TQRLKKGKQTLEDTTMKRLSEMENALRKASGQ------------VDRANAAVRRLETENAEIRAEMEASKLSAAES 487 (573)
Q Consensus 424 ~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~Q------------ldrAna~vrrLE~ena~lr~EmEAaKL~A~ES 487 (573)
-+++++-|+.||+.=|+|.+++-....-|-.| .++=...|.-||.|.+.-|.++++.=+.-++.
T Consensus 27 H~~f~~Ak~rLe~~hr~k~~~VmkEW~eae~q~k~lpkadkk~m~~rFQ~~v~aLE~E~~~ErqqL~etH~~RV~a 102 (219)
T 3pmr_A 27 HEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLPKADRQALNEHFQSILQTLEEQVSGERQRLVETHATRVIA 102 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34566666666666665555544444333333 34555778889999999999988765554443
No 109
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=30.15 E-value=5.9e+02 Score=28.02 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmE 478 (573)
+||.+--|.|.++..-+...++.|-++..|.-.....++
T Consensus 356 QRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~ 394 (602)
T 1cii_A 356 QRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALN 394 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999888888888777554444333
No 110
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=30.03 E-value=5.8e+02 Score=27.93 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=32.0
Q ss_pred HhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 466 LETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 466 LE~ena~lr~EmEAaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
+++||+.||+.=++||-.=-.-.+..++.+.+ ..++++.-|.+|++=...+.+++++|++++.
T Consensus 46 i~aeNeaikkrNa~aka~Ye~~l~kY~~dlak----------Y~~~~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 46 LTAENTAIKKRNADAKADYEAKLAKYQADLAK----------YQKDLADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666666666666544322233334433322 2334555555555555555566666665444
No 111
>1bb1_A Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1 PDB: 1bb1_C 1u0i_B
Probab=29.59 E-value=1.2e+02 Score=21.67 Aligned_cols=28 Identities=39% Similarity=0.544 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 507 AWEKQKAKLQEEIANEKEKIKELQQCLA 534 (573)
Q Consensus 507 ~WEkQK~~LQEEla~eK~Kl~~l~qel~ 534 (573)
.-|-+.+-+.|||++-|.||+.+.+-++
T Consensus 6 aieyeqaaikeeiaaikdkiaaikeyia 33 (36)
T 1bb1_A 6 AIEYEQAAIKEEIAAIKDKIAAIKEYIA 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677889999999999998877654
No 112
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=29.46 E-value=1.7e+02 Score=25.56 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhH
Q 008232 516 QEEIANEKEKIKELQQCLARIQQDQK 541 (573)
Q Consensus 516 QEEla~eK~Kl~~l~qel~qak~~q~ 541 (573)
|.+..+-+.||++|++.|+-+-..++
T Consensus 51 ~~~V~~lq~Ki~elkr~lAd~v~~~k 76 (96)
T 2ic9_A 51 RAAVSALETKLGELKRELADLIAAQK 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56788888899999999988776554
No 113
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=29.36 E-value=4.1e+02 Score=28.76 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhHhHhhhhhhh
Q 008232 525 KIKELQQCLARIQQDQKETEVRLI 548 (573)
Q Consensus 525 Kl~~l~qel~qak~~q~q~E~~~~ 548 (573)
++.+|.+++...++..+++|.++.
T Consensus 124 ~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 124 RGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 114
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.34 E-value=3.2e+02 Score=24.69 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 511 QKAKLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 511 QK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
+-+.+|.++..-+.++.++++++........+.|
T Consensus 97 el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 97 ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333333333333
No 115
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=29.32 E-value=41 Score=23.30 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=18.3
Q ss_pred hhhhhHHHHHHhhhhHHHHHHHH
Q 008232 456 VDRANAAVRRLETENAEIRAEME 478 (573)
Q Consensus 456 ldrAna~vrrLE~ena~lr~EmE 478 (573)
+|+-|+..--||+||.++++..|
T Consensus 1 mdqlnallasleaenkqlkakve 23 (31)
T 1p9i_A 1 MDQLNALLASLEAENKQLKAKVE 23 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 36678889999999999998766
No 116
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.58 E-value=1.6e+02 Score=30.39 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
.+..=+.+...||+.|...+.||.+|++.+.+.++
T Consensus 20 ~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 20 IGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555777888888888888888888887776554
No 117
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=28.36 E-value=1.9e+02 Score=24.60 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 492 LEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQC 532 (573)
Q Consensus 492 ~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qe 532 (573)
..+..-|...+..|..-|++++.|-.||.+.+....+|.++
T Consensus 14 ~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 14 KELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 34445556667788888999999999998888877777654
No 118
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.73 E-value=71 Score=25.89 Aligned_cols=40 Identities=8% Similarity=-0.049 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHhcCcHHHhhhhC
Q 008232 166 YSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSIE 205 (573)
Q Consensus 166 RSL~GLVafL~~~fP~LS~~dAm~yLLlADadLl~A~a~~ 205 (573)
-.+...|..|.+.||.+......|-|..++.|+..|+..-
T Consensus 16 ~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~L 55 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQL 55 (67)
T ss_dssp CCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3445667779999999999999999999999999998754
No 119
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=27.21 E-value=69 Score=27.30 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 513 AKLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 513 ~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
..|||||.+-..=|-.|.+||++|.+.-+..|
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpae 56 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANPAE 56 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 46888888888888888888888877665554
No 120
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.20 E-value=4.4e+02 Score=27.98 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 523 KEKIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 523 K~Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
+.++.+|.+++...++..+++|.++..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 75 LAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555554443
No 121
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=27.03 E-value=3.6e+02 Score=24.57 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHhHhHhhhhhhhhccccccc
Q 008232 514 KLQEEIANEKEKIKELQQCL------------ARIQQDQKETEVRLICLFPWFST 556 (573)
Q Consensus 514 ~LQEEla~eK~Kl~~l~qel------------~qak~~q~q~E~~~~~~~~~~~~ 556 (573)
-|+.||.+...+|..|++.- ..+.....++..+|..|--+...
T Consensus 151 ~~e~dL~~~~~~v~~l~~~a~~L~~~~~~~~a~~i~~~~~~l~~~W~~L~~~~~~ 205 (218)
T 3edu_A 151 AFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAG 205 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888887776533 34455567788889887655443
No 122
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=27.00 E-value=2.2e+02 Score=23.96 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 008232 516 QEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 516 QEEla~eK~Kl~~l~qel~qak~ 538 (573)
+.+..+-+.||.+|++.|+-+-.
T Consensus 51 ~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 51 RAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888887654
No 123
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.80 E-value=3.1e+02 Score=23.32 Aligned_cols=51 Identities=25% Similarity=0.387 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 491 CLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 491 c~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
-..++.+-++.|.... .+..+|+++|..-+..|..+++++...+++..+++
T Consensus 30 Wk~lAE~RR~AL~eaL---~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 30 WKEVAEKRRKALYEAL---KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777776655 46667888888888888888888888777766554
No 124
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=25.58 E-value=92 Score=24.86 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHhcCcHHHhh
Q 008232 162 QLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRAS 202 (573)
Q Consensus 162 rle~RSL~GLVafL~~~fP~LS~~dAm~yLLlADadLl~A~ 202 (573)
++.. -|+.||--+++.||+++....+|=|... .++..-+
T Consensus 12 ~~~s-ql~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~Ti 50 (58)
T 4g3o_A 12 YFQG-QLNAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITT 50 (58)
T ss_dssp HHHH-HHHHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHH
T ss_pred hhhH-HHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHH
Confidence 4444 5889999999999999999999999875 5554443
No 125
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.35 E-value=4.7e+02 Score=25.25 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHhHhHhhh
Q 008232 519 IANEKEKIKELQ-QCLARIQQDQKETE 544 (573)
Q Consensus 519 la~eK~Kl~~l~-qel~qak~~q~q~E 544 (573)
|-.-|.||.++| +=++.|++.+++++
T Consensus 184 LNeKK~KIR~lq~~Ll~~~~~~~~~~~ 210 (213)
T 1ik9_A 184 LNEKKTKIRSLHNKLLNAAQEREKDIK 210 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 445689999999 66667888887765
No 126
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=25.23 E-value=1.8e+02 Score=27.14 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhHhhhhhh
Q 008232 529 LQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 529 l~qel~qak~~q~q~E~~~ 547 (573)
|.+.|.-.....+|+|+.+
T Consensus 120 LrRDLeASReAKKqlEadl 138 (146)
T 2xnx_M 120 LRRDLDASREAKKQVEKDL 138 (146)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555543
No 127
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=25.23 E-value=4.5e+02 Score=25.02 Aligned_cols=78 Identities=17% Similarity=0.311 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHHHHHhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhh
Q 008232 380 HQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRA 459 (573)
Q Consensus 380 ~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk~LR~Ekee~~rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrA 459 (573)
+.+++++.++.....+|.+ |..-. ..|...|..++.+=.+-+.||..=+++..+|..+|..--++
T Consensus 62 ~~~q~~~~~~e~l~s~ae~--------ll~l~---~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp---- 126 (192)
T 2p22_C 62 NPLTDFAGKIHAFRDQFKQ--------LEENF---EDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGD---- 126 (192)
T ss_dssp SCCHHHHHHHHHHHHHHHH--------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSH----
T ss_pred hhHHHHHHHHHHHHHHHHH--------HHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH----
Confidence 4567777777776443333 21222 33444444555555577788888899999998888443332
Q ss_pred hHHHHHHhhhhHH
Q 008232 460 NAAVRRLETENAE 472 (573)
Q Consensus 460 na~vrrLE~ena~ 472 (573)
++.-++|....++
T Consensus 127 ~~L~~~L~~a~~e 139 (192)
T 2p22_C 127 IALKKKLEQNTKK 139 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2445555544333
No 128
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.92 E-value=3.2e+02 Score=23.24 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhh
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEV 545 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~ 545 (573)
-+.++.+....|++||..-...|...++.|..+.+...+.|+
T Consensus 45 Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ 86 (101)
T 3u1c_A 45 DIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666666666655555555554443
No 129
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=24.88 E-value=89 Score=27.46 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 506 LAWEKQKAKLQEEIANEKEKIKELQQCLARI 536 (573)
Q Consensus 506 ~~WEkQK~~LQEEla~eK~Kl~~l~qel~qa 536 (573)
..|.++-.+.++++...+.+|.+|+.||.+-
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466666677788888888888888888763
No 130
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=24.57 E-value=2.7e+02 Score=23.80 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 485 AESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQ 537 (573)
Q Consensus 485 ~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak 537 (573)
--.|.+|.. |-+.....-|.++..||-|+..-+..+.++.+++...+
T Consensus 36 RgyAq~CR~------Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 36 RGYAQSCRY------KRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777753 22233344556666666665555555555555555444
No 131
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.27 E-value=99 Score=24.56 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHhcCcHHHhh
Q 008232 168 LAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRAS 202 (573)
Q Consensus 168 L~GLVafL~~~fP~LS~~dAm~yLLlADadLl~A~ 202 (573)
+..||--+++.||+++....+|=|.... ++..-+
T Consensus 13 ~~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~Ti 46 (58)
T 2ejs_A 13 LNAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITT 46 (58)
T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHH
Confidence 4557777999999999999999998766 555443
No 132
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=24.25 E-value=3.3e+02 Score=23.17 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=34.5
Q ss_pred HhhhhcccchhhHHhhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHHHh
Q 008232 426 RLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEAS 480 (573)
Q Consensus 426 rlkKeKq~lEe~T~KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmEAa 480 (573)
.|++.+..|| .+|.|||.-+. .|++..++.+..||.+.+.+|.+|+.-
T Consensus 16 ~Lq~~~~~LE----~~l~e~E~~~~---~e~~~~q~~i~~lE~eL~~~r~e~~~q 63 (95)
T 3mov_A 16 QGQKESRACL----ERIQELEDLLA---KEKDNSRRMLTDKEREMAEIRDQMQQQ 63 (95)
T ss_dssp --CCCCHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555 45777877543 478888899999999999999999753
No 133
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=24.17 E-value=1.3e+02 Score=31.45 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHH
Q 008232 375 VVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELK 415 (573)
Q Consensus 375 il~Lv~rv~eLq~qlkewtdWA~qKvmQaa~rL~kd~~ELk 415 (573)
+-.+..|..+|+.+|.+-.=|.+++-.| +|+++..+|+
T Consensus 5 l~~~~~r~~el~~~~~~p~~~~d~~~~~---~~~ke~~~l~ 42 (354)
T 3d5a_X 5 LDRLEEEYRELEALLSDPEVLKDKGRYQ---SLSRRYAEMG 42 (354)
T ss_dssp HHHHTHHHHHHHHHTTSTTTTSCHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchhhCHHHHH---HHHHHHHHHH
Confidence 3456788899999998877787744332 3444444443
No 134
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=24.15 E-value=1.7e+02 Score=24.60 Aligned_cols=26 Identities=31% Similarity=0.472 Sum_probs=12.1
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHh
Q 008232 455 QVDRANAAVRRLETENAEIRAEMEAS 480 (573)
Q Consensus 455 QldrAna~vrrLE~ena~lr~EmEAa 480 (573)
|.+.+-.-++.+|.+|.+|+......
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~l 32 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAM 32 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444455555555555555554443
No 135
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.99 E-value=3.2e+02 Score=22.86 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHH
Q 008232 440 KRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (573)
Q Consensus 440 KrLsEmEnAl~kas~QldrAna~vrrLE~ena~lr~EmE 478 (573)
..+.+.+..+.....++...+..+..|+.+...++.++.
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777777665
No 136
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=23.15 E-value=74 Score=28.35 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 008232 515 LQEEIANEKEKIKELQQCLARIQQ 538 (573)
Q Consensus 515 LQEEla~eK~Kl~~l~qel~qak~ 538 (573)
++++|.....+|.+|+++|.+.++
T Consensus 21 ~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 21 IEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566666667777777766654
No 137
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=23.12 E-value=1.2e+02 Score=20.80 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHhcCcHHHhhhh
Q 008232 170 GMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSI 204 (573)
Q Consensus 170 GLVafL~~~fP~LS~~dAm~yLLlADadLl~A~a~ 204 (573)
..|.-|... .++..+|...|..++.|+..|+..
T Consensus 6 ~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~ 38 (40)
T 1z96_A 6 SKIAQLVSM--GFDPLEAAQALDAANGDLDVAASF 38 (40)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 345666665 689999999999999999998753
No 138
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.83 E-value=3.8e+02 Score=23.31 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=16.8
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHH
Q 008232 445 MENALRKASGQVDRANAAVRRLETENAEIRAEME 478 (573)
Q Consensus 445 mEnAl~kas~QldrAna~vrrLE~ena~lr~EmE 478 (573)
.+..+.+...+|.+....-...|.++..|..|+|
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE 57 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVE 57 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555554444444555555555554
No 139
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.69 E-value=3.3e+02 Score=23.13 Aligned_cols=50 Identities=26% Similarity=0.384 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh
Q 008232 492 LEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETE 544 (573)
Q Consensus 492 ~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E 544 (573)
.+++.+-++.|.... .+..+|+++|..-+..|..|.++..+.+....+++
T Consensus 23 k~lAE~Rr~AL~eaL---~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q 72 (83)
T 1wlq_A 23 KEVAEQRRKALYEAL---KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 72 (83)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777776665 35566788888888888888888877777766643
No 140
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.59 E-value=89 Score=23.32 Aligned_cols=38 Identities=16% Similarity=0.420 Sum_probs=27.8
Q ss_pred HHHHHHHhhhhcCCChHHHHHhHhcccccccCchhhhHHHH
Q 008232 87 LYNEAISKLVALGYDEDVALKAILKNGHCYGGMDVLTNILH 127 (573)
Q Consensus 87 fY~~ALaRLP~~g~~~~~A~raLL~AG~CYGplDPVSNII~ 127 (573)
.|.+.|.+|..+|+++..|.+||..+ .|=.+...+.+.
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~---~~n~e~A~e~L~ 44 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRAS---YNNPHRAVEYLL 44 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTT---TSCSHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHh---CCCHHHHHHHHH
Confidence 47789999999999999887887764 454555444443
No 141
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=22.42 E-value=4.9e+02 Score=24.46 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHhhHHH
Q 008232 397 HQKAMQAARKLSNDLTELKMLRMEREE 423 (573)
Q Consensus 397 ~qKvmQaa~rL~kd~~ELk~LR~Ekee 423 (573)
.+.|+.-..++.++..+++.+++.|+-
T Consensus 129 ~~~vi~Pl~~~~~~~~~i~~~ikKR~~ 155 (251)
T 2fic_A 129 VDQALLTMDTYLGQFPDIKSRIAKRGR 155 (251)
T ss_dssp HHHTHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 367999999999999999998888773
No 142
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.37 E-value=2.2e+02 Score=29.98 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhHhHhhhhhhhh
Q 008232 523 KEKIKELQQCLARIQQDQKETEVRLIC 549 (573)
Q Consensus 523 K~Kl~~l~qel~qak~~q~q~E~~~~~ 549 (573)
+.++.+|.+++...++..+++|.++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 70 IARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555443
No 143
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.27 E-value=1.7e+02 Score=30.57 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=0.0
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 479 ASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 479 AaKL~A~ES~~sc~e~~kkekk~lkkl~~WEkQK~~LQEEla~eK~Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
||||.+-+. ++..-+.++..|+++|+.-+..+.++++++.+.+...+++--.++-|
T Consensus 2 ~~~~~~~~~----------------~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 2 ASKIAALKE----------------KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp ---CHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 144
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=21.58 E-value=5.2e+02 Score=24.50 Aligned_cols=13 Identities=8% Similarity=0.348 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 008232 501 CLKRLLAWEKQKA 513 (573)
Q Consensus 501 ~lkkl~~WEkQK~ 513 (573)
.+..+|.+|.+++
T Consensus 217 ~~~~lQ~le~~r~ 229 (305)
T 2efl_A 217 IFQKIQEMEERRI 229 (305)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555553
No 145
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=21.55 E-value=2.1e+02 Score=24.45 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 504 RLLAWEKQKAKLQEEIA-------------NEKEKIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla-------------~eK~Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
-|.+.|.|-..|+.+|. .-|..|.++++.|.+|.++..|||---+-+
T Consensus 16 lFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 16 HFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46666666666666662 225678899999999999999988766665
No 146
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.55 E-value=1.4e+02 Score=23.85 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHhcCcHHHhhhhCcC
Q 008232 170 GMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSIEIP 207 (573)
Q Consensus 170 GLVafL~~~fP~LS~~dAm~yLLlADadLl~A~a~~~~ 207 (573)
.+|.-.+.+.-.-+...|..||-.++-||..|+..-.+
T Consensus 20 e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 20 EKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35666666666567899999999999999999886544
No 147
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=21.44 E-value=96 Score=21.86 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008232 518 EIANEKEKIKELQQCLARIQ 537 (573)
Q Consensus 518 Ela~eK~Kl~~l~qel~qak 537 (573)
||++-|+.++.+.+||+.+|
T Consensus 3 elaaikqelaaikkelaaik 22 (34)
T 3r4h_A 3 ELAAIKQELAAIKKELAAIK 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
No 148
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.55 E-value=1.1e+02 Score=20.69 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008232 509 EKQKAKLQEEIANEKEKIKELQ 530 (573)
Q Consensus 509 EkQK~~LQEEla~eK~Kl~~l~ 530 (573)
|=+..-|..-|++.|+||+-|.
T Consensus 6 efendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 6 EFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhc
Confidence 4445566677777777777664
No 149
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.53 E-value=5.5e+02 Score=27.78 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhHhHhhhhhh
Q 008232 526 IKELQQCLARIQQDQKETEVRL 547 (573)
Q Consensus 526 l~~l~qel~qak~~q~q~E~~~ 547 (573)
+.+|.+++..+++..+++|.++
T Consensus 80 ~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 80 KEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334433333334444444
No 150
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=20.35 E-value=2.3e+02 Score=23.88 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhHhHhhhhhhhhc
Q 008232 505 LLAWEKQKAKLQEEIA------------NEKEKIKELQQCLARIQQDQKETEVRLICL 550 (573)
Q Consensus 505 l~~WEkQK~~LQEEla------------~eK~Kl~~l~qel~qak~~q~q~E~~~~~~ 550 (573)
|.+.|.|-..+.++|. .-|..|.++++.+..|.++..|||---+-+
T Consensus 3 F~~YE~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 3 LISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556666666666665 345678999999999999999999877766
No 151
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=20.29 E-value=2e+02 Score=29.81 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=38.0
Q ss_pred HHHHHHhhhhcccchhhHHhh-----HHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHH
Q 008232 421 REETQRLKKGKQTLEDTTMKR-----LSEMENALRKASGQVDRANAAVRRLETENAEIRAEM 477 (573)
Q Consensus 421 kee~~rlkKeKq~lEe~T~Kr-----LsEmEnAl~kas~QldrAna~vrrLE~ena~lr~Em 477 (573)
+++++.|++.++.-.++|-+| |+. =.||.-+..||...-+...+|+++...|++-|
T Consensus 329 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~ 389 (406)
T 4dyl_A 329 QEMVTQLQQELRNEEENTHPRERVQLLGK-RQVLQEALQGLQVALCSQAKLQAQQELLQTKL 389 (406)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCGGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCcchHHHHHhH-HhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334445555555555554444 553 35788889999999999999999877776544
Done!