Query 008233
Match_columns 573
No_of_seqs 286 out of 2324
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 21:11:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 7E-113 1E-117 827.1 45.9 510 24-558 34-548 (663)
2 PTZ00186 heat shock 70 kDa pre 100.0 5.9E-94 1.3E-98 786.3 59.5 485 25-532 26-518 (657)
3 PTZ00009 heat shock 70 kDa pro 100.0 1.4E-90 3E-95 766.5 61.1 495 25-532 3-502 (653)
4 PRK13410 molecular chaperone D 100.0 3.5E-90 7.5E-95 760.1 59.7 484 26-533 2-494 (668)
5 PTZ00400 DnaK-type molecular c 100.0 6E-90 1.3E-94 760.7 60.4 483 26-532 41-532 (663)
6 PRK13411 molecular chaperone D 100.0 4.1E-90 8.9E-95 761.8 58.7 483 27-532 3-493 (653)
7 PRK00290 dnaK molecular chaper 100.0 1.2E-88 2.6E-93 751.2 59.7 481 27-533 3-492 (627)
8 PLN03184 chloroplast Hsp70; Pr 100.0 1.8E-88 3.9E-93 749.1 60.4 484 25-532 38-530 (673)
9 TIGR01991 HscA Fe-S protein as 100.0 3.9E-88 8.4E-93 740.1 61.6 476 28-532 1-479 (599)
10 KOG0101 Molecular chaperones H 100.0 5E-90 1.1E-94 721.1 39.4 532 23-567 4-548 (620)
11 PRK05183 hscA chaperone protei 100.0 4.4E-87 9.6E-92 733.1 59.6 475 25-532 18-495 (616)
12 TIGR02350 prok_dnaK chaperone 100.0 6.8E-87 1.5E-91 735.1 60.2 480 27-532 1-489 (595)
13 CHL00094 dnaK heat shock prote 100.0 1.9E-86 4.2E-91 731.3 60.5 483 26-532 2-493 (621)
14 KOG0102 Molecular chaperones m 100.0 6.3E-89 1.4E-93 683.8 34.5 486 23-532 24-518 (640)
15 PRK01433 hscA chaperone protei 100.0 9.9E-84 2.1E-88 700.2 55.8 449 26-532 19-473 (595)
16 PF00012 HSP70: Hsp70 protein; 100.0 1.7E-83 3.7E-88 714.4 56.6 488 28-532 1-495 (602)
17 COG0443 DnaK Molecular chapero 100.0 6.5E-82 1.4E-86 682.0 46.5 466 25-532 4-474 (579)
18 KOG0103 Molecular chaperones H 100.0 1.3E-71 2.9E-76 575.3 40.6 487 27-528 2-499 (727)
19 KOG0104 Molecular chaperones G 100.0 2.4E-65 5.1E-70 529.5 37.1 482 23-526 19-533 (902)
20 PRK11678 putative chaperone; P 100.0 2.4E-57 5.3E-62 477.3 36.9 334 28-410 2-447 (450)
21 PRK13928 rod shape-determining 100.0 1.4E-39 3E-44 335.0 30.2 304 29-411 6-324 (336)
22 PRK13929 rod-share determining 100.0 1.7E-38 3.6E-43 326.0 31.2 303 27-408 5-324 (335)
23 PRK13927 rod shape-determining 100.0 1.7E-36 3.8E-41 312.3 29.4 304 27-410 6-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 1E-35 2.3E-40 306.0 31.7 303 29-410 5-327 (333)
25 PRK13930 rod shape-determining 100.0 3.8E-35 8.3E-40 302.7 28.5 305 27-410 9-328 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 4.9E-31 1.1E-35 264.5 24.3 303 27-409 2-320 (326)
27 TIGR02529 EutJ ethanolamine ut 100.0 9.1E-29 2E-33 240.8 21.7 201 141-406 38-238 (239)
28 PRK15080 ethanolamine utilizat 100.0 1.7E-26 3.6E-31 228.9 27.6 201 142-408 66-267 (267)
29 COG1077 MreB Actin-like ATPase 100.0 1.3E-26 2.9E-31 223.2 24.4 308 27-412 7-333 (342)
30 TIGR01174 ftsA cell division p 99.9 7.6E-22 1.7E-26 206.1 24.3 193 178-407 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 7.1E-21 1.5E-25 201.1 25.5 197 177-409 166-387 (420)
32 COG0849 ftsA Cell division ATP 99.8 1.3E-16 2.9E-21 164.4 26.4 206 167-411 158-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.7 6E-16 1.3E-20 162.0 21.4 237 143-410 75-347 (371)
34 smart00268 ACTIN Actin. ACTIN 99.7 1.7E-15 3.8E-20 158.6 19.5 299 27-410 2-347 (373)
35 PRK13917 plasmid segregation p 99.6 7.3E-14 1.6E-18 143.6 23.5 212 167-413 115-339 (344)
36 PTZ00280 Actin-related protein 99.5 2.6E-12 5.7E-17 136.1 26.2 204 165-385 103-336 (414)
37 COG4820 EutJ Ethanolamine util 99.5 6E-14 1.3E-18 126.0 9.7 195 147-406 76-270 (277)
38 TIGR03739 PRTRC_D PRTRC system 99.5 1.5E-12 3.2E-17 133.2 19.2 208 163-408 101-318 (320)
39 PF00022 Actin: Actin; InterP 99.5 2.7E-12 5.7E-17 135.6 18.9 308 27-410 5-367 (393)
40 PTZ00452 actin; Provisional 99.4 7.6E-11 1.7E-15 122.9 24.7 217 164-409 100-348 (375)
41 PTZ00004 actin-2; Provisional 99.4 5.3E-11 1.1E-15 124.6 22.3 217 164-409 101-351 (378)
42 PTZ00466 actin-like protein; P 99.4 1.9E-10 4.2E-15 120.1 24.4 216 164-409 106-353 (380)
43 PTZ00281 actin; Provisional 99.3 5.6E-11 1.2E-15 124.2 19.6 217 164-409 101-349 (376)
44 PF06406 StbA: StbA protein; 99.3 1.8E-11 3.9E-16 124.8 12.2 173 193-405 141-316 (318)
45 TIGR01175 pilM type IV pilus a 99.2 1.1E-09 2.3E-14 113.8 21.3 162 177-386 142-307 (348)
46 PF11104 PilM_2: Type IV pilus 99.1 1.7E-09 3.6E-14 111.8 18.3 183 178-408 136-339 (340)
47 KOG0679 Actin-related protein 98.9 9.6E-08 2.1E-12 94.7 18.5 114 143-276 86-202 (426)
48 PRK10719 eutA reactivating fac 98.8 1.5E-07 3.2E-12 97.6 14.9 159 164-374 88-268 (475)
49 COG5277 Actin and related prot 98.6 3.5E-06 7.7E-11 88.9 19.3 98 164-276 106-204 (444)
50 PF07520 SrfB: Virulence facto 98.6 8.1E-06 1.8E-10 91.5 22.6 268 139-412 417-836 (1002)
51 COG4972 PilM Tfp pilus assembl 98.5 8.1E-05 1.8E-09 73.3 23.8 161 178-385 149-311 (354)
52 TIGR00241 CoA_E_activ CoA-subs 98.5 7.3E-06 1.6E-10 80.7 17.1 172 196-407 73-248 (248)
53 TIGR03192 benz_CoA_bzdQ benzoy 98.5 4.6E-05 1E-09 75.3 22.0 46 364-410 242-288 (293)
54 TIGR03286 methan_mark_15 putat 98.3 5.4E-05 1.2E-09 77.8 19.1 45 364-409 358-402 (404)
55 TIGR02261 benz_CoA_red_D benzo 98.2 0.00027 5.9E-09 69.0 21.6 45 364-408 214-262 (262)
56 COG1924 Activator of 2-hydroxy 98.2 0.0003 6.4E-09 70.7 21.5 174 194-410 209-390 (396)
57 PF08841 DDR: Diol dehydratase 97.6 0.00067 1.4E-08 65.4 11.3 188 188-408 106-329 (332)
58 COG4457 SrfB Uncharacterized p 97.6 0.012 2.6E-07 63.0 20.9 85 324-413 743-849 (1014)
59 KOG0676 Actin and related prot 97.5 0.0018 4E-08 66.3 14.4 218 165-409 100-345 (372)
60 PRK13317 pantothenate kinase; 97.5 0.0026 5.6E-08 63.3 14.6 49 361-409 222-273 (277)
61 TIGR02259 benz_CoA_red_A benzo 97.4 0.0041 8.8E-08 63.6 14.6 172 196-408 249-432 (432)
62 KOG0797 Actin-related protein 97.2 0.0053 1.2E-07 63.7 12.9 121 137-275 195-322 (618)
63 PF06277 EutA: Ethanolamine ut 97.1 0.0087 1.9E-07 62.7 14.1 90 165-265 86-178 (473)
64 PF02782 FGGY_C: FGGY family o 96.7 0.0024 5.2E-08 60.4 5.4 48 361-410 149-196 (198)
65 KOG0680 Actin-related protein 96.5 0.13 2.9E-06 50.8 15.4 105 164-274 93-198 (400)
66 KOG0677 Actin-related protein 96.3 0.075 1.6E-06 50.8 12.6 235 149-413 83-364 (389)
67 PRK15027 xylulokinase; Provisi 96.0 0.02 4.4E-07 62.2 8.1 81 328-413 356-437 (484)
68 PF14574 DUF4445: Domain of un 95.8 0.23 4.9E-06 52.2 14.5 58 324-382 291-348 (412)
69 PLN02669 xylulokinase 95.8 0.031 6.8E-07 61.7 8.5 48 361-410 445-492 (556)
70 TIGR01315 5C_CHO_kinase FGGY-f 95.7 0.027 5.8E-07 62.1 7.7 85 327-413 409-493 (541)
71 TIGR00555 panK_eukar pantothen 95.5 0.17 3.7E-06 50.2 11.6 47 360-406 229-278 (279)
72 PRK11031 guanosine pentaphosph 95.3 0.59 1.3E-05 50.9 16.1 79 178-269 92-171 (496)
73 TIGR02628 fuculo_kin_coli L-fu 95.2 0.069 1.5E-06 57.7 8.8 51 361-413 393-443 (465)
74 PF01968 Hydantoinase_A: Hydan 95.2 0.12 2.5E-06 52.2 9.8 67 337-406 217-283 (290)
75 PRK10854 exopolyphosphatase; P 95.2 0.29 6.3E-06 53.5 13.5 59 178-245 97-156 (513)
76 TIGR01312 XylB D-xylulose kina 95.0 0.065 1.4E-06 58.2 7.9 51 361-413 390-440 (481)
77 PRK00047 glpK glycerol kinase; 95.0 0.065 1.4E-06 58.5 7.7 51 361-413 403-453 (498)
78 PRK04123 ribulokinase; Provisi 94.9 0.072 1.6E-06 58.9 7.9 51 361-413 438-489 (548)
79 TIGR01234 L-ribulokinase L-rib 94.8 0.081 1.8E-06 58.3 8.0 80 328-413 405-486 (536)
80 TIGR01311 glycerol_kin glycero 94.8 0.072 1.6E-06 58.1 7.5 79 329-413 369-449 (493)
81 PTZ00294 glycerol kinase-like 94.8 0.081 1.8E-06 57.8 7.9 80 329-413 376-456 (504)
82 PRK10331 L-fuculokinase; Provi 94.7 0.078 1.7E-06 57.4 7.5 81 328-413 358-439 (470)
83 TIGR01314 gntK_FGGY gluconate 94.7 0.12 2.7E-06 56.5 9.1 80 329-413 371-451 (505)
84 COG4819 EutA Ethanolamine util 94.6 0.1 2.2E-06 51.7 7.1 36 225-264 144-179 (473)
85 PLN02295 glycerol kinase 94.5 0.15 3.2E-06 55.9 9.0 51 361-413 412-462 (512)
86 KOG2517 Ribulose kinase and re 94.3 0.11 2.4E-06 55.4 7.2 73 337-414 393-465 (516)
87 TIGR02627 rhamnulo_kin rhamnul 94.2 0.094 2E-06 56.5 6.6 50 361-413 387-436 (454)
88 COG1069 AraB Ribulose kinase [ 94.2 0.62 1.3E-05 49.7 12.2 62 347-413 420-481 (544)
89 PRK10939 autoinducer-2 (AI-2) 94.0 0.14 3E-06 56.3 7.6 51 361-413 409-459 (520)
90 KOG0681 Actin-related protein 94.0 0.47 1E-05 50.2 10.7 116 143-275 95-215 (645)
91 PF02541 Ppx-GppA: Ppx/GppA ph 93.7 0.34 7.3E-06 48.7 9.2 77 180-269 74-151 (285)
92 smart00842 FtsA Cell division 93.7 0.79 1.7E-05 42.8 11.1 30 178-207 157-186 (187)
93 PRK10640 rhaB rhamnulokinase; 93.4 0.15 3.2E-06 55.2 6.4 50 361-413 375-424 (471)
94 PRK14878 UGMP family protein; 93.3 5.5 0.00012 40.8 17.2 25 361-385 241-265 (323)
95 PTZ00340 O-sialoglycoprotein e 93.0 11 0.00024 38.7 18.8 92 163-268 70-164 (345)
96 COG0248 GppA Exopolyphosphatas 93.0 1.3 2.8E-05 47.9 12.4 95 143-245 52-148 (492)
97 PF13941 MutL: MutL protein 92.9 0.6 1.3E-05 49.6 9.7 29 358-386 382-411 (457)
98 COG1070 XylB Sugar (pentulose 92.6 0.51 1.1E-05 51.5 9.2 80 328-412 370-450 (502)
99 KOG2531 Sugar (pentulose and h 92.6 0.39 8.4E-06 49.8 7.4 54 355-410 436-489 (545)
100 TIGR03706 exo_poly_only exopol 92.0 0.83 1.8E-05 46.3 9.2 108 147-268 56-163 (300)
101 TIGR00744 ROK_glcA_fam ROK fam 92.0 7.3 0.00016 39.6 16.3 93 141-243 33-140 (318)
102 TIGR00329 gcp_kae1 metallohydr 92.0 5.3 0.00011 40.5 15.0 25 361-385 258-282 (305)
103 PF01869 BcrAD_BadFG: BadF/Bad 91.6 0.51 1.1E-05 47.0 7.2 71 335-408 197-271 (271)
104 PLN02666 5-oxoprolinase 91.4 2.4 5.2E-05 51.1 13.3 78 328-408 454-532 (1275)
105 KOG2708 Predicted metalloprote 91.4 2.4 5.1E-05 40.1 10.5 75 328-407 225-301 (336)
106 PF07318 DUF1464: Protein of u 90.5 4.9 0.00011 40.9 12.7 53 360-413 259-318 (343)
107 PRK09604 UGMP family protein; 90.2 18 0.00039 37.2 17.0 53 361-413 254-311 (332)
108 COG1548 Predicted transcriptio 90.1 3.2 7E-05 40.1 10.3 72 149-244 76-148 (330)
109 PTZ00297 pantothenate kinase; 90.0 10 0.00023 46.6 17.2 50 359-408 1389-1444(1452)
110 KOG0681 Actin-related protein 89.0 0.36 7.8E-06 51.0 3.5 67 344-410 539-614 (645)
111 PF03702 UPF0075: Uncharacteri 87.9 1.8 3.9E-05 44.9 7.7 73 336-411 262-338 (364)
112 PRK09698 D-allose kinase; Prov 86.5 38 0.00083 34.0 23.4 49 361-409 236-295 (302)
113 COG0533 QRI7 Metal-dependent p 86.3 6.6 0.00014 39.9 10.4 52 329-385 230-285 (342)
114 KOG1385 Nucleoside phosphatase 84.4 4.6 9.9E-05 41.8 8.3 76 139-244 154-231 (453)
115 TIGR03281 methan_mark_12 putat 83.9 5.4 0.00012 39.7 8.3 174 198-414 129-315 (326)
116 PLN02920 pantothenate kinase 1 81.8 7.9 0.00017 40.2 8.9 49 360-408 296-350 (398)
117 PRK09585 anmK anhydro-N-acetyl 81.5 6.3 0.00014 40.9 8.2 66 342-411 270-339 (365)
118 PRK00976 hypothetical protein; 81.1 7.8 0.00017 39.3 8.5 50 361-413 263-314 (326)
119 COG3426 Butyrate kinase [Energ 81.0 41 0.00089 33.3 12.8 50 358-407 293-345 (358)
120 COG0554 GlpK Glycerol kinase [ 80.1 5.2 0.00011 42.3 7.1 81 328-413 371-452 (499)
121 COG5026 Hexokinase [Carbohydra 79.7 6.9 0.00015 40.9 7.6 27 24-50 73-102 (466)
122 COG0145 HyuA N-methylhydantoin 79.1 2.9 6.2E-05 47.0 5.2 42 194-244 255-296 (674)
123 COG2377 Predicted molecular ch 78.7 50 0.0011 34.0 13.3 54 358-411 287-344 (371)
124 PF14450 FtsA: Cell division p 78.4 4.1 8.9E-05 35.0 5.0 48 228-275 1-54 (120)
125 PF02543 CmcH_NodU: Carbamoylt 78.2 90 0.002 32.4 17.6 84 325-413 130-216 (360)
126 PLN02362 hexokinase 78.0 36 0.00079 37.0 13.0 42 170-211 198-241 (509)
127 PRK03011 butyrate kinase; Prov 75.3 4.6 0.0001 41.9 5.1 47 361-407 295-344 (358)
128 cd06007 R3H_DEXH_helicase R3H 75.2 9.8 0.00021 28.2 5.4 36 157-194 9-44 (59)
129 PLN02405 hexokinase 74.4 40 0.00086 36.6 12.0 40 172-211 200-241 (497)
130 PLN02914 hexokinase 72.9 48 0.001 35.9 12.2 43 170-212 198-242 (490)
131 PRK00047 glpK glycerol kinase; 71.7 3.8 8.3E-05 44.7 3.8 23 22-44 1-23 (498)
132 COG1070 XylB Sugar (pentulose 70.5 5.3 0.00011 43.7 4.5 23 24-46 2-24 (502)
133 smart00732 YqgFc Likely ribonu 69.7 4.8 0.0001 32.9 3.1 18 27-44 2-19 (99)
134 PF00349 Hexokinase_1: Hexokin 69.3 17 0.00037 34.5 7.1 52 225-278 62-118 (206)
135 PF00370 FGGY_N: FGGY family o 69.0 5.3 0.00012 38.9 3.8 18 27-44 1-18 (245)
136 PF03652 UPF0081: Uncharacteri 68.7 5.6 0.00012 35.0 3.4 21 26-46 1-21 (135)
137 PRK10939 autoinducer-2 (AI-2) 67.3 5.2 0.00011 43.9 3.6 19 26-44 3-21 (520)
138 TIGR00143 hypF [NiFe] hydrogen 67.3 6.8 0.00015 44.5 4.6 48 361-408 658-710 (711)
139 cd02640 R3H_NRF R3H domain of 67.1 21 0.00045 26.5 5.6 40 154-194 6-45 (60)
140 PTZ00107 hexokinase; Provision 66.1 1.7E+02 0.0036 31.7 14.5 41 172-212 189-231 (464)
141 PLN02596 hexokinase-like 65.8 1.3E+02 0.0027 32.8 13.5 41 172-212 200-242 (490)
142 COG1940 NagC Transcriptional r 64.9 70 0.0015 32.3 11.2 23 23-45 3-25 (314)
143 PRK10331 L-fuculokinase; Provi 62.9 6.9 0.00015 42.3 3.5 21 27-47 3-24 (470)
144 PRK00109 Holliday junction res 62.8 8.7 0.00019 33.9 3.5 21 25-45 3-23 (138)
145 KOG2707 Predicted metalloprote 61.8 2E+02 0.0042 29.6 19.4 222 144-387 81-331 (405)
146 KOG1369 Hexokinase [Carbohydra 61.7 1.6E+02 0.0034 31.8 13.0 66 169-246 183-251 (474)
147 PRK04123 ribulokinase; Provisi 61.3 8.5 0.00018 42.6 3.9 20 25-44 2-21 (548)
148 PF14450 FtsA: Cell division p 61.1 14 0.0003 31.7 4.4 57 147-207 50-119 (120)
149 TIGR00241 CoA_E_activ CoA-subs 60.9 7.3 0.00016 38.2 3.0 19 28-46 2-20 (248)
150 PTZ00294 glycerol kinase-like 60.6 8 0.00017 42.3 3.5 19 27-45 3-21 (504)
151 PF08735 DUF1786: Putative pyr 60.4 84 0.0018 30.7 9.9 101 161-273 111-213 (254)
152 TIGR03123 one_C_unchar_1 proba 60.1 6.3 0.00014 40.0 2.4 19 226-244 128-146 (318)
153 cd02641 R3H_Smubp-2_like R3H d 59.5 29 0.00063 25.7 5.3 40 154-194 6-45 (60)
154 PRK07058 acetate kinase; Provi 59.5 1.3E+02 0.0029 31.5 11.8 47 336-386 297-344 (396)
155 cd00529 RuvC_resolvase Hollida 59.1 13 0.00028 33.5 4.1 17 28-44 2-18 (154)
156 COG2441 Predicted butyrate kin 58.3 33 0.00071 33.8 6.7 54 360-413 272-335 (374)
157 TIGR02628 fuculo_kin_coli L-fu 58.3 9.1 0.0002 41.4 3.4 19 27-45 2-20 (465)
158 COG0816 Predicted endonuclease 55.6 13 0.00028 32.9 3.3 21 26-46 2-22 (141)
159 PF00814 Peptidase_M22: Glycop 55.4 1.4E+02 0.0029 29.7 11.0 40 341-385 206-245 (268)
160 PF14574 DUF4445: Domain of un 55.0 65 0.0014 34.1 8.9 95 228-378 3-100 (412)
161 PRK15027 xylulokinase; Provisi 54.9 9.9 0.00021 41.3 3.0 18 28-45 2-19 (484)
162 PRK09605 bifunctional UGMP fam 53.9 35 0.00075 37.6 7.1 53 361-413 245-302 (535)
163 COG5026 Hexokinase [Carbohydra 52.5 47 0.001 34.9 7.1 31 224-254 73-104 (466)
164 PLN02295 glycerol kinase 51.6 13 0.00027 40.9 3.2 21 27-47 1-22 (512)
165 cd02646 R3H_G-patch R3H domain 51.6 39 0.00084 24.8 4.8 41 151-194 3-43 (58)
166 TIGR01311 glycerol_kin glycero 51.5 13 0.00029 40.4 3.4 18 27-44 2-19 (493)
167 TIGR03722 arch_KAE1 universal 51.0 2.9E+02 0.0062 28.2 17.8 25 361-385 242-266 (322)
168 COG1521 Pantothenate kinase ty 50.9 73 0.0016 31.2 7.9 50 330-381 181-230 (251)
169 PLN02669 xylulokinase 50.8 17 0.00036 40.3 4.0 23 22-44 4-26 (556)
170 PRK13317 pantothenate kinase; 50.7 21 0.00045 35.6 4.3 43 225-273 95-137 (277)
171 TIGR01234 L-ribulokinase L-rib 49.9 16 0.00035 40.3 3.7 18 27-44 2-19 (536)
172 KOG0797 Actin-related protein 49.7 8 0.00017 41.0 1.2 70 343-413 509-592 (618)
173 TIGR01315 5C_CHO_kinase FGGY-f 49.5 14 0.0003 40.8 3.2 17 28-44 2-18 (541)
174 KOG2517 Ribulose kinase and re 49.4 33 0.00072 37.1 5.7 21 25-45 5-25 (516)
175 TIGR01314 gntK_FGGY gluconate 49.0 14 0.00031 40.3 3.1 19 27-45 1-19 (505)
176 PRK05082 N-acetylmannosamine k 46.8 71 0.0015 31.8 7.6 49 361-409 233-287 (291)
177 PF00349 Hexokinase_1: Hexokin 46.4 16 0.00035 34.7 2.6 39 172-210 163-204 (206)
178 COG4012 Uncharacterized protei 46.2 45 0.00097 32.6 5.5 72 227-304 2-96 (342)
179 TIGR03723 bact_gcp putative gl 45.6 3.4E+02 0.0074 27.5 19.4 45 361-405 259-308 (314)
180 COG2192 Predicted carbamoyl tr 45.6 4.5E+02 0.0097 28.9 23.1 179 225-413 137-338 (555)
181 cd02639 R3H_RRM R3H domain of 45.4 48 0.001 24.6 4.4 30 165-194 16-45 (60)
182 TIGR02259 benz_CoA_red_A benzo 45.1 20 0.00043 37.4 3.2 22 26-47 2-23 (432)
183 cd04036 C2_cPLA2 C2 domain pre 44.6 1.7E+02 0.0037 24.5 8.6 69 450-523 45-116 (119)
184 PLN03173 chalcone synthase; Pr 44.5 84 0.0018 33.1 7.9 50 337-386 99-149 (391)
185 PRK13310 N-acetyl-D-glucosamin 43.9 62 0.0013 32.5 6.7 49 361-409 245-301 (303)
186 PRK13321 pantothenate kinase; 43.5 24 0.00051 34.8 3.4 19 28-46 2-20 (256)
187 PLN03172 chalcone synthase fam 42.8 91 0.002 32.9 7.8 55 332-386 94-149 (393)
188 PRK13318 pantothenate kinase; 42.6 25 0.00055 34.6 3.5 20 28-47 2-21 (258)
189 PF02075 RuvC: Crossover junct 42.5 39 0.00084 30.2 4.4 24 28-51 1-26 (149)
190 PRK09557 fructokinase; Reviewe 42.4 41 0.0009 33.8 5.1 48 361-408 244-299 (301)
191 PF02685 Glucokinase: Glucokin 41.8 3.8E+02 0.0082 27.3 11.9 205 191-411 91-316 (316)
192 PLN03170 chalcone synthase; Pr 41.5 79 0.0017 33.4 7.2 53 334-386 100-153 (401)
193 PRK12408 glucokinase; Provisio 41.4 27 0.00059 35.9 3.7 24 21-44 11-34 (336)
194 PLN03168 chalcone synthase; Pr 38.9 1E+02 0.0023 32.3 7.6 56 331-386 92-148 (389)
195 PRK13331 pantothenate kinase; 38.0 41 0.00088 33.0 4.0 23 25-47 6-28 (251)
196 TIGR00250 RNAse_H_YqgF RNAse H 38.0 21 0.00045 31.2 1.8 17 29-45 1-17 (130)
197 PRK00039 ruvC Holliday junctio 37.4 31 0.00068 31.4 2.9 19 26-44 2-20 (164)
198 PF08392 FAE1_CUT1_RppA: FAE1/ 37.3 76 0.0016 31.7 5.8 44 343-386 86-130 (290)
199 PRK13320 pantothenate kinase; 34.8 45 0.00097 32.6 3.8 21 27-47 3-23 (244)
200 TIGR02707 butyr_kinase butyrat 34.7 40 0.00087 34.9 3.6 46 361-406 293-341 (351)
201 COG4020 Uncharacterized protei 34.5 4.5E+02 0.0098 25.7 11.1 52 359-413 266-320 (332)
202 PRK13326 pantothenate kinase; 34.2 51 0.0011 32.6 4.1 23 25-47 5-27 (262)
203 PTZ00107 hexokinase; Provision 33.2 1E+02 0.0023 33.2 6.5 24 225-248 73-96 (464)
204 COG4012 Uncharacterized protei 33.2 2.9E+02 0.0064 27.2 8.7 52 225-278 226-278 (342)
205 COG1334 FlaG Uncharacterized f 32.6 42 0.00091 28.7 2.7 32 506-537 67-99 (120)
206 PLN02377 3-ketoacyl-CoA syntha 32.3 93 0.002 33.9 6.0 54 333-386 165-219 (502)
207 KOG2872 Uroporphyrinogen decar 32.0 97 0.0021 30.8 5.4 70 326-399 218-287 (359)
208 PRK11199 tyrA bifunctional cho 31.9 2.8E+02 0.0061 28.9 9.4 15 263-277 13-27 (374)
209 PF00480 ROK: ROK family; Int 31.4 1.3E+02 0.0027 27.3 6.1 88 140-243 31-134 (179)
210 PF12401 DUF3662: Protein of u 30.7 3E+02 0.0064 23.4 7.7 88 265-360 4-94 (116)
211 PRK00180 acetate kinase A/prop 30.1 1.6E+02 0.0034 31.1 7.0 48 336-386 301-349 (402)
212 COG1940 NagC Transcriptional r 29.6 2E+02 0.0044 28.9 7.8 55 224-278 4-59 (314)
213 TIGR00114 lumazine-synth 6,7-d 28.5 65 0.0014 28.4 3.4 60 339-408 13-72 (138)
214 PRK07515 3-oxoacyl-(acyl carri 27.9 93 0.002 32.4 5.1 47 337-385 266-312 (372)
215 PRK12419 riboflavin synthase s 27.8 49 0.0011 29.9 2.5 59 340-408 24-82 (158)
216 PF02801 Ketoacyl-synt_C: Beta 27.6 66 0.0014 27.3 3.2 47 341-387 24-72 (119)
217 PLN02362 hexokinase 27.5 1.1E+02 0.0024 33.4 5.6 24 225-248 94-117 (509)
218 TIGR01319 glmL_fam conserved h 26.7 60 0.0013 34.6 3.3 45 354-398 382-432 (463)
219 PF03646 FlaG: FlaG protein; 26.5 30 0.00066 28.9 0.9 33 505-537 54-87 (107)
220 TIGR01319 glmL_fam conserved h 26.4 3.5E+02 0.0075 29.1 8.7 48 231-280 1-50 (463)
221 PF03630 Fumble: Fumble ; Int 26.2 1.6E+02 0.0034 30.4 6.1 47 361-407 287-339 (341)
222 KOG0678 Actin-related protein 25.9 7.3E+02 0.016 25.4 11.4 99 165-275 107-209 (415)
223 PRK08868 flagellar protein Fla 25.8 61 0.0013 28.7 2.6 34 505-538 88-122 (144)
224 COG4020 Uncharacterized protei 25.6 1.5E+02 0.0032 28.9 5.3 67 361-442 109-175 (332)
225 PLN02192 3-ketoacyl-CoA syntha 25.4 1.4E+02 0.003 32.6 5.8 54 333-386 169-223 (511)
226 PLN02404 6,7-dimethyl-8-ribity 25.3 66 0.0014 28.5 2.8 72 324-408 8-79 (141)
227 PLN02854 3-ketoacyl-CoA syntha 25.0 1.3E+02 0.0029 32.8 5.7 45 342-386 190-235 (521)
228 COG0554 GlpK Glycerol kinase [ 24.8 62 0.0013 34.6 2.9 24 25-48 4-28 (499)
229 TIGR00671 baf pantothenate kin 24.5 72 0.0016 31.1 3.2 46 329-374 174-219 (243)
230 PRK13324 pantothenate kinase; 24.4 78 0.0017 31.2 3.4 20 28-47 2-21 (258)
231 COG3894 Uncharacterized metal- 24.1 3.9E+02 0.0084 29.0 8.5 45 226-270 164-210 (614)
232 PF13941 MutL: MutL protein 23.8 1.7E+02 0.0037 31.4 6.1 46 228-273 2-49 (457)
233 TIGR00555 panK_eukar pantothen 23.7 95 0.0021 31.0 3.9 44 225-274 100-143 (279)
234 COG1521 Pantothenate kinase ty 23.4 81 0.0018 30.9 3.3 21 28-48 2-22 (251)
235 PF04848 Pox_A22: Poxvirus A22 23.1 1.3E+02 0.0028 26.8 4.2 27 26-52 1-29 (143)
236 TIGR01312 XylB D-xylulose kina 22.7 51 0.0011 35.6 2.0 16 29-44 1-16 (481)
237 PRK00292 glk glucokinase; Prov 22.7 83 0.0018 31.9 3.4 18 27-44 3-20 (316)
238 PLN00130 succinate dehydrogena 22.5 15 0.00033 33.3 -1.7 25 23-47 54-78 (213)
239 COG0054 RibH Riboflavin syntha 22.4 1.3E+02 0.0029 26.9 4.1 72 324-408 13-84 (152)
240 PF03309 Pan_kinase: Type III 22.3 98 0.0021 29.2 3.6 21 28-48 1-21 (206)
241 PLN03171 chalcone synthase-lik 21.7 2.9E+02 0.0063 29.1 7.4 54 333-386 101-155 (399)
242 cd00327 cond_enzymes Condensin 21.4 2.7E+02 0.0057 26.7 6.7 45 343-387 10-56 (254)
243 KOG1369 Hexokinase [Carbohydra 21.0 5.9E+02 0.013 27.5 9.3 26 224-249 84-109 (474)
244 PRK09557 fructokinase; Reviewe 20.9 3.5E+02 0.0076 27.0 7.6 38 190-236 96-133 (301)
245 TIGR03281 methan_mark_12 putat 20.8 3.4E+02 0.0074 27.4 6.9 67 362-442 103-169 (326)
246 PLN02932 3-ketoacyl-CoA syntha 20.7 2.1E+02 0.0045 31.1 6.0 56 331-386 139-195 (478)
247 KOG1794 N-Acetylglucosamine ki 20.6 2.7E+02 0.0059 27.9 6.2 50 364-413 266-319 (336)
248 TIGR00067 glut_race glutamate 20.6 1.3E+02 0.0029 29.4 4.2 42 361-406 172-213 (251)
249 TIGR02627 rhamnulo_kin rhamnul 20.5 50 0.0011 35.5 1.4 16 29-44 1-16 (454)
250 PF07066 DUF3882: Lactococcus 20.4 1.2E+02 0.0026 26.8 3.4 22 26-47 2-28 (159)
251 PRK07738 flagellar protein Fla 20.4 95 0.0021 26.5 2.7 32 506-537 64-96 (117)
252 PF00815 Histidinol_dh: Histid 20.0 1.9E+02 0.0041 30.6 5.3 49 164-212 137-186 (412)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-113 Score=827.11 Aligned_cols=510 Identities=34% Similarity=0.558 Sum_probs=488.7
Q ss_pred CCCeEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeCCceEEcCChHHHhhh-ccCccchhhHhhHhcCCCC
Q 008233 24 FPEIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVD 102 (573)
Q Consensus 24 ~~~~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~ 102 (573)
....+||||+|||||||+++++|++++|.|++|+|.+||+|+|.++++++| ++|+++ ..+|++++++.||+||+.|
T Consensus 34 ~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiG---dAAKNQ~~~NPenTiFD~KRLIGr~~ 110 (663)
T KOG0100|consen 34 KLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIG---DAAKNQLTSNPENTIFDAKRLIGRKF 110 (663)
T ss_pred ccceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhh---hHhhcccccCcccceechHHHhCccc
Confidence 345899999999999999999999999999999999999999999999999 999999 9999999999999999999
Q ss_pred CChhhhh-cCCCCeeEEEeeCCCccEEEEEec-CceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHH
Q 008233 103 TDPVVHA-SKSLPFLVQTVDIGVRPFIAALVN-NAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQL 180 (573)
Q Consensus 103 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr 180 (573)
+++.+|+ .+++||+++.. ++.|++++.+. |+.+.++|+++++|+|..+++.|+.++|.+++++|+||||||++.||
T Consensus 111 ~d~~vq~Dik~~Pfkvv~k--~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQr 188 (663)
T KOG0100|consen 111 NDKSVQKDIKFLPFKVVNK--DGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQR 188 (663)
T ss_pred CChhhhhhhhcCceEEEcC--CCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHH
Confidence 9999999 99999999987 89999997666 67889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-
Q 008233 181 TRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA- 259 (573)
Q Consensus 181 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~- 259 (573)
+++++|..+|||+++++|+||+|||++|++++... .+++||||+||||||+|++.+.+|+|+|+++.|+.
T Consensus 189 QATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~g---------EknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDTh 259 (663)
T KOG0100|consen 189 QATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDG---------EKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTH 259 (663)
T ss_pred hhhcccceeccceEEEeecCccHHHHHhcccccCC---------cceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcc
Confidence 99999999999999999999999999999998764 79999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE-ecCCeeEEEEEcHHHHHHHHH
Q 008233 260 IGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD-LGNGLKVSKNVTREEFEEVNQ 338 (573)
Q Consensus 260 lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~-l~~g~d~~~~itr~~fe~l~~ 338 (573)
|||.|||+++++|+.+.++++++.|++.+.+++++|+++||+||..||++.++.+.|+ +++|.||+-++||..||++..
T Consensus 260 LGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNm 339 (663)
T KOG0100|consen 260 LGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNM 339 (663)
T ss_pred cCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCCCC
Q 008233 339 KVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPF 418 (573)
Q Consensus 339 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~~~ 418 (573)
++|++...+++++|+++++.+.+|+.|+||||++|||.||++|+++|.+++....+||+||||+|||.+|..+++. .
T Consensus 340 DLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe---e 416 (663)
T KOG0100|consen 340 DLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE---E 416 (663)
T ss_pred HHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc---c
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred CCCceEEeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeCCCC
Q 008233 419 GNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPP 498 (573)
Q Consensus 419 ~~~~~~~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~~~~ 498 (573)
...++++.|+.|.++||++-+|.|..|||||+.||++++..|++..|+|..+.|.+|||++++..+|++||.|.++++||
T Consensus 417 ~t~divLLDv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipP 496 (663)
T KOG0100|consen 417 DTGDIVLLDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPP 496 (663)
T ss_pred CcCcEEEEeeccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEEcCCccEEEEEEEcCCCCCCCcccceeeecccccCCccchHHHHHHH
Q 008233 499 SPKGVPEINVCMDIDASSVLRVLVGVIMPGNPHPVIPVMEVRLPTVDDGHGWCAEALNRA 558 (573)
Q Consensus 499 ~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (573)
+|+|.|+|+|+|++|.||+|+|+|.++.+|+..++. |++|.-+++.|++.++
T Consensus 497 APRGvpqIEVtFevDangiL~VsAeDKgtg~~~kit--------ItNd~~rLt~EdIerM 548 (663)
T KOG0100|consen 497 APRGVPQIEVTFEVDANGILQVSAEDKGTGKKEKIT--------ITNDKGRLTPEDIERM 548 (663)
T ss_pred CCCCCccEEEEEEEccCceEEEEeeccCCCCcceEE--------EecCCCCCCHHHHHHH
Confidence 999999999999999999999999999999886633 4555555555555543
No 2
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=5.9e-94 Score=786.27 Aligned_cols=485 Identities=31% Similarity=0.522 Sum_probs=455.2
Q ss_pred CCeEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeCCceEEcCChHHHhhh-ccCccchhhHhhHhcCCCCC
Q 008233 25 PEIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVDT 103 (573)
Q Consensus 25 ~~~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~~ 103 (573)
...+||||||||||+||+++++++++++|..|.+.+||+|+|.+++++|| ..|+.. ..+|.++++++||+||+.++
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG---~~Ak~~~~~~p~~ti~~~KRliG~~~~ 102 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVG---LAAKRQAITNPQSTFYAVKRLIGRRFE 102 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEc---HHHHHhhhhCchhHHHHHHHHhccccc
Confidence 45799999999999999999999999999999999999999998899999 999999 99999999999999999999
Q ss_pred Chhhhh-cCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHH
Q 008233 104 DPVVHA-SKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTR 182 (573)
Q Consensus 104 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~ 182 (573)
++.++. .+.+||+++.. .++...+. ..+ .+.++|+++.+++|++|++.|+.+++.++.++|||||+||++.||++
T Consensus 103 d~~v~~~~~~~p~~vv~~-~~~~~~i~--~~~-~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~a 178 (657)
T PTZ00186 103 DEHIQKDIKNVPYKIVRA-GNGDAWVQ--DGN-GKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQA 178 (657)
T ss_pred cHHHHHhhccCcEEEEEc-CCCceEEE--eCC-CeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHH
Confidence 999998 88999999877 56666665 322 34599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cc
Q 008233 183 IERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IG 261 (573)
Q Consensus 183 l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lG 261 (573)
+++||+.|||++++||+||+|||++|+.... .++++||||+||||||+|++++.++.++|+++.|+. +|
T Consensus 179 t~~Aa~~AGl~v~rlInEPtAAAlayg~~~~----------~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LG 248 (657)
T PTZ00186 179 TKDAGTIAGLNVIRVVNEPTAAALAYGMDKT----------KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLG 248 (657)
T ss_pred HHHHHHHcCCCeEEEEcChHHHHHHHhccCC----------CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCC
Confidence 9999999999999999999999999987643 268999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE-ecC---C-eeEEEEEcHHHHHHH
Q 008233 262 GEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD-LGN---G-LKVSKNVTREEFEEV 336 (573)
Q Consensus 262 G~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~-l~~---g-~d~~~~itr~~fe~l 336 (573)
|+|||++|++|+.++|+++++.++..+++.+.+|+.+||++|+.||...++.+.++ +.. | .++.++|||++|+++
T Consensus 249 G~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l 328 (657)
T PTZ00186 249 GEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGI 328 (657)
T ss_pred chhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHH
Confidence 99999999999999999999888888899999999999999999999999999988 533 2 458899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCC
Q 008233 337 NQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGIND 416 (573)
Q Consensus 337 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~ 416 (573)
++|+++++..+++++|+++++++.+|+.|+||||+||||.||++|+++| +..+....||++|||+|||++|+.+++.
T Consensus 329 ~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~l~~~-- 405 (657)
T PTZ00186 329 TQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD-- 405 (657)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCccccCCCchHHHHhHHHHHHHhccc--
Confidence 9999999999999999999999999999999999999999999999999 5666788999999999999999999874
Q ss_pred CCCCCceEEeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeCC
Q 008233 417 PFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGI 496 (573)
Q Consensus 417 ~~~~~~~~~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~~ 496 (573)
.+++.+.|++|++||+++.++.+.+|||||++||++++..|++..|||+.+.|.||||++..+.+|..||+|.+.++
T Consensus 406 ---~~~~~l~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~i 482 (657)
T PTZ00186 406 ---VKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGI 482 (657)
T ss_pred ---cCceEEEeeccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEEEEEcCCccEEEEEEEcCCCCCCC
Q 008233 497 PPSPKGVPEINVCMDIDASSVLRVLVGVIMPGNPHP 532 (573)
Q Consensus 497 ~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~ 532 (573)
|+.++|.++|+|+|++|.||+|+|++.+..+|++..
T Consensus 483 p~~~~G~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~ 518 (657)
T PTZ00186 483 PPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQN 518 (657)
T ss_pred CCCCCCCCcEEEEEEEcCCCEEEEEEEEccCCcEEE
Confidence 999999999999999999999999999999998865
No 3
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=1.4e-90 Score=766.48 Aligned_cols=495 Identities=34% Similarity=0.556 Sum_probs=463.3
Q ss_pred CCeEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeCCceEEcCChHHHhhh-ccCccchhhHhhHhcCCCCC
Q 008233 25 PEIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVDT 103 (573)
Q Consensus 25 ~~~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~~ 103 (573)
...+||||||||||+||+++++++++++|.+|++.+||+|+|.++++++| +.|+.+ .++|.++++++||+||+.++
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG---~~A~~~~~~~p~~ti~~~KrliG~~~~ 79 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIG---DAAKNQVARNPENTVFDAKRLIGRKFD 79 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEc---HHHHHhhhhCcccEEhhhHHHhCCCCC
Confidence 45799999999999999999999999999999999999999998899999 999999 99999999999999999999
Q ss_pred Chhhhh-cCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHH
Q 008233 104 DPVVHA-SKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTR 182 (573)
Q Consensus 104 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~ 182 (573)
++.++. .+.+||.+... .++.+.+.+..++..+.++|+++++++|++|++.|+.+++..+.++|||||++|++.||++
T Consensus 80 d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a 158 (653)
T PTZ00009 80 DSVVQSDMKHWPFKVTTG-GDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQA 158 (653)
T ss_pred chhHhhhhhcCceEEEEc-CCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHH
Confidence 999988 88899998877 6777888765667667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cc
Q 008233 183 IERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IG 261 (573)
Q Consensus 183 l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lG 261 (573)
+++||+.|||++++||+||+|||++|+...... .+.++||||+||||||+|++++.++.++|+++.|+. +|
T Consensus 159 ~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~--------~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lG 230 (653)
T PTZ00009 159 TKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGD--------GEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLG 230 (653)
T ss_pred HHHHHHHcCCceeEEecchHHHHHHHhhhccCC--------CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCC
Confidence 999999999999999999999999999865432 268899999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHhhhhhc-CCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE-ecCCeeEEEEEcHHHHHHHHHH
Q 008233 262 GEDLLQNMMRHLMPNSESLF-SSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD-LGNGLKVSKNVTREEFEEVNQK 339 (573)
Q Consensus 262 G~~iD~~l~~~l~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~-l~~g~d~~~~itr~~fe~l~~~ 339 (573)
|++||.+|++|+.++|+.++ +.++..+++.+.+|+.+||++|+.||.+.++.+.++ ++++.+++++|||++||++|+|
T Consensus 231 G~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~ 310 (653)
T PTZ00009 231 GEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGD 310 (653)
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHH
Confidence 99999999999999998876 367777899999999999999999999999999999 8899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCCCCC
Q 008233 340 VFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFG 419 (573)
Q Consensus 340 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~~~~ 419 (573)
+++++.++|+++|+++++++.+|+.|+||||+||+|+||++|+++|++..+....||++|||+|||++|+.+++... ++
T Consensus 311 l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~-~~ 389 (653)
T PTZ00009 311 YFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQS-SQ 389 (653)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCcc-cc
Confidence 99999999999999999999999999999999999999999999997778888999999999999999999987421 34
Q ss_pred CCceEEeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeCCCCC
Q 008233 420 NLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPS 499 (573)
Q Consensus 420 ~~~~~~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~~~~~ 499 (573)
.+++.+.|++|++||++..++.+.+||++|++||++++..|++..|+|+.+.|.||||+.....+|..||+|.+.++++.
T Consensus 390 ~~~~~~~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~ 469 (653)
T PTZ00009 390 VQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPA 469 (653)
T ss_pred ccceEEEeecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCC
Confidence 67889999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred CCCCCEEEEEEEEcCCccEEEEEEEcCCCCCCC
Q 008233 500 PKGVPEINVCMDIDASSVLRVLVGVIMPGNPHP 532 (573)
Q Consensus 500 ~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~ 532 (573)
++|.++|+++|++|.+|+|+|++.+..+|++..
T Consensus 470 ~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~ 502 (653)
T PTZ00009 470 PRGVPQIEVTFDIDANGILNVSAEDKSTGKSNK 502 (653)
T ss_pred CCCCceEEEEEEECCCCeEEEEEecccCCceee
Confidence 999889999999999999999999999887654
No 4
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.5e-90 Score=760.06 Aligned_cols=484 Identities=31% Similarity=0.500 Sum_probs=450.5
Q ss_pred CeEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEe-CCceEEcCChHHHhhh-ccCccchhhHhhHhcCCCCC
Q 008233 26 EIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFK-DEVPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVDT 103 (573)
Q Consensus 26 ~~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~-~~~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~~ 103 (573)
..+||||||||||+||++.+|.+.++.|..|.+.+||+|+|. ++++++| ..|+.+ ..+|.++++++||+||++++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG---~~A~~~~~~~p~~ti~~~KRliG~~~~ 78 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVG---QLARRQLVLNPQNTFYNLKRFIGRRYD 78 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEEC---HHHHHhhHhCccceehHHhhhhCCCch
Confidence 368999999999999999999999999999999999999996 5789999 999999 99999999999999999886
Q ss_pred Chhhhh-cCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHH
Q 008233 104 DPVVHA-SKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTR 182 (573)
Q Consensus 104 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~ 182 (573)
+ ++. .+.+||.+..+ .+|...+. +++..+.++|+++++++|++|++.|+.+++.++.++|||||++|++.||++
T Consensus 79 ~--~~~~~~~~~~~v~~~-~~g~~~i~--~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a 153 (668)
T PRK13410 79 E--LDPESKRVPYTIRRN-EQGNVRIK--CPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQA 153 (668)
T ss_pred h--hHHhhccCCeEEEEC-CCCcEEEE--EecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHH
Confidence 6 344 67889999877 56777776 443345699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cc
Q 008233 183 IERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IG 261 (573)
Q Consensus 183 l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lG 261 (573)
+++||+.|||++++||+||+|||++|+.... .++++||||+||||||+|++++.++.++|+++.|+. +|
T Consensus 154 ~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~----------~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lG 223 (668)
T PRK13410 154 TRDAGRIAGLEVERILNEPTAAALAYGLDRS----------SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLG 223 (668)
T ss_pred HHHHHHHcCCCeEEEecchHHHHHHhccccC----------CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCC
Confidence 9999999999999999999999999987653 268999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE-ecCC----eeEEEEEcHHHHHHH
Q 008233 262 GEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD-LGNG----LKVSKNVTREEFEEV 336 (573)
Q Consensus 262 G~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~-l~~g----~d~~~~itr~~fe~l 336 (573)
|++||++|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++ +..+ .++.++|||++||++
T Consensus 224 G~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l 303 (668)
T PRK13410 224 GNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESL 303 (668)
T ss_pred hhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHH
Confidence 99999999999999999888888888899999999999999999999999999998 5432 468899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCC
Q 008233 337 NQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGIND 416 (573)
Q Consensus 337 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~ 416 (573)
|+++++++..+|+++|+++++++.+|+.|+||||+||+|+|++.|+++| +..+....||++|||+|||++|+.+++.
T Consensus 304 ~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~-- 380 (668)
T PRK13410 304 CGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE-- 380 (668)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhccc--
Confidence 9999999999999999999999999999999999999999999999999 5777889999999999999999999874
Q ss_pred CCCCCceEEeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeCC
Q 008233 417 PFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGI 496 (573)
Q Consensus 417 ~~~~~~~~~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~~ 496 (573)
.+++.+.|++|++||+++.++.+.+|||+|++||++++..|++..|+|+.+.|.+|||+.....+|..||+|.|.++
T Consensus 381 ---~~~~~l~Dv~p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i 457 (668)
T PRK13410 381 ---LKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGI 457 (668)
T ss_pred ---ccceeEEeeccccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEEEEEcCCccEEEEEEEcCCCCCCCc
Q 008233 497 PPSPKGVPEINVCMDIDASSVLRVLVGVIMPGNPHPV 533 (573)
Q Consensus 497 ~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~~ 533 (573)
|+.+.|.++|+|+|++|.||+|+|++.+..+|++..+
T Consensus 458 ~~~~~g~~~I~v~f~id~nGiL~V~a~d~~tg~~~~~ 494 (668)
T PRK13410 458 PPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSV 494 (668)
T ss_pred CCCCCCCCeEEEEEEECCCcEEEEEEEEcCCCceeee
Confidence 9999999999999999999999999999999987543
No 5
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=6e-90 Score=760.71 Aligned_cols=483 Identities=33% Similarity=0.536 Sum_probs=453.7
Q ss_pred CeEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEe-CCceEEcCChHHHhhh-ccCccchhhHhhHhcCCCCC
Q 008233 26 EIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFK-DEVPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVDT 103 (573)
Q Consensus 26 ~~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~-~~~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~~ 103 (573)
..+||||||||||+||+++++++++++|.+|++.+||+|+|. ++++++| ..|+.+ .++|.++++++|||||+.++
T Consensus 41 ~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG---~~A~~~~~~~p~~ti~~~KrliG~~~~ 117 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVG---IVAKRQAVTNPENTVFATKRLIGRRYD 117 (663)
T ss_pred CcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEEC---HHHHHhHHhCCcceehhhhhhcCCCcC
Confidence 469999999999999999999999999999999999999996 5689999 999999 99999999999999999999
Q ss_pred Chhhhh-cCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHH
Q 008233 104 DPVVHA-SKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTR 182 (573)
Q Consensus 104 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~ 182 (573)
++.++. .+.+||.++.. .++...+. +++. .++|+++++++|++|++.|+.+++.++.++|||||++|++.||++
T Consensus 118 d~~~~~~~~~~p~~~~~~-~~~~~~~~--~~~~--~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a 192 (663)
T PTZ00400 118 EDATKKEQKILPYKIVRA-SNGDAWIE--AQGK--KYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQA 192 (663)
T ss_pred cHHHHhhhccCCeEEEec-CCCceEEE--ECCE--EECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHH
Confidence 998888 88899999887 57777777 6664 499999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cc
Q 008233 183 IERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IG 261 (573)
Q Consensus 183 l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lG 261 (573)
+++||+.|||++++||+||+|||++|+.... .++++||||+||||||+|++++.++.++|+++.|+. +|
T Consensus 193 ~~~Aa~~AGl~v~~li~EptAAAlay~~~~~----------~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LG 262 (663)
T PTZ00400 193 TKDAGKIAGLDVLRIINEPTAAALAFGMDKN----------DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLG 262 (663)
T ss_pred HHHHHHHcCCceEEEeCchHHHHHHhccccC----------CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcC
Confidence 9999999999999999999999999987643 268999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE-ecCC----eeEEEEEcHHHHHHH
Q 008233 262 GEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD-LGNG----LKVSKNVTREEFEEV 336 (573)
Q Consensus 262 G~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~-l~~g----~d~~~~itr~~fe~l 336 (573)
|++||++|++|+.++|+++++.++..+++.+.+|+.+||++|+.||.+.++.+.++ +..+ .++.++|||++|+++
T Consensus 263 G~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l 342 (663)
T PTZ00400 263 GEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEEL 342 (663)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHH
Confidence 99999999999999999988888888899999999999999999999999999888 5433 478999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCC
Q 008233 337 NQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGIND 416 (573)
Q Consensus 337 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~ 416 (573)
|+|+++++.++++++|+++++.+.+|+.|+||||+||+|+||+.|+++| +.++....||+++||+|||++|+.+++.
T Consensus 343 ~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l~~~-- 419 (663)
T PTZ00400 343 THDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE-- 419 (663)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhhcCC--
Confidence 9999999999999999999999999999999999999999999999999 5677889999999999999999999873
Q ss_pred CCCCCceEEeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeCC
Q 008233 417 PFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGI 496 (573)
Q Consensus 417 ~~~~~~~~~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~~ 496 (573)
.+++.+.|++|++||+++.++.+.+|||+|+++|++++..|++..|+|+.+.|.||||++..+.+|..||++.+.++
T Consensus 420 ---~~~~~~~dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i 496 (663)
T PTZ00400 420 ---IKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGI 496 (663)
T ss_pred ---ccceEEEeccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEEEEEcCCccEEEEEEEcCCCCCCC
Q 008233 497 PPSPKGVPEINVCMDIDASSVLRVLVGVIMPGNPHP 532 (573)
Q Consensus 497 ~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~ 532 (573)
++.+.|.++|+++|++|.+|+|+|++.+..+|++..
T Consensus 497 ~~~~~g~~~i~v~f~id~~Gil~v~a~~~~~~~~~~ 532 (663)
T PTZ00400 497 PPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQE 532 (663)
T ss_pred CCCCCCCceEEEEEEECCCCCEEEEEEeccCCcEEE
Confidence 999999889999999999999999999999987754
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=4.1e-90 Score=761.76 Aligned_cols=483 Identities=33% Similarity=0.499 Sum_probs=450.7
Q ss_pred eEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEe-CCceEEcCChHHHhhh-ccCccchhhHhhHhcCCCCCC
Q 008233 27 IAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFK-DEVPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVDTD 104 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~-~~~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~~~ 104 (573)
.+||||||||||+||++.+|.+.+++|.+|++.+||+|+|. +++++|| +.|+.+ ..+|.++++++|||||+.+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG---~~A~~~~~~~p~~ti~~~KrliG~~~~d 79 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVG---QLAKRQAVTNAENTVYSIKRFIGRRWDD 79 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEc---HHHHHhhhhCcccchHHHHHHhCCCccc
Confidence 68999999999999999999999999999999999999996 4589999 999999 999999999999999999988
Q ss_pred hhhhhcCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHH
Q 008233 105 PVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIE 184 (573)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~ 184 (573)
+.. ..+.+||.++.. .++...+. +++. .++|+++++++|++|++.|+.+++.++.++|||||++|++.||++++
T Consensus 80 ~~~-~~~~~~~~~v~~-~~~~~~~~--i~~~--~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~ 153 (653)
T PRK13411 80 TEE-ERSRVPYTCVKG-RDDTVNVQ--IRGR--NYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATK 153 (653)
T ss_pred hhH-HhhcCCceEEec-CCCceEEE--ECCE--EECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHH
Confidence 642 267889998876 56666666 6664 49999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cchH
Q 008233 185 RACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGE 263 (573)
Q Consensus 185 ~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lGG~ 263 (573)
+||+.|||++++|++||+|||++|+..... .+.++||||+||||||+|++++.++.++|+++.|+. +||+
T Consensus 154 ~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~---------~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~ 224 (653)
T PRK13411 154 DAGTIAGLEVLRIINEPTAAALAYGLDKQD---------QEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGD 224 (653)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhcccccC---------CCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHH
Confidence 999999999999999999999999876532 268899999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE-ecC----CeeEEEEEcHHHHHHHHH
Q 008233 264 DLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD-LGN----GLKVSKNVTREEFEEVNQ 338 (573)
Q Consensus 264 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~-l~~----g~d~~~~itr~~fe~l~~ 338 (573)
+||++|++|+.++|+.+++.++..+++.+.+|+.+||++|+.||.+.++.+.++ +.. +.++.+.|||++|+++++
T Consensus 225 dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~ 304 (653)
T PRK13411 225 DFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTK 304 (653)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHH
Confidence 999999999999999888888888899999999999999999999999999988 432 357899999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCCCC
Q 008233 339 KVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPF 418 (573)
Q Consensus 339 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~~~ 418 (573)
|+++++..+|+++|+++++.+.+|+.|+||||+||+|+||+.|+++|++..+..+.||++|||+|||++|+.+++.
T Consensus 305 ~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~---- 380 (653)
T PRK13411 305 DLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE---- 380 (653)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----
Confidence 9999999999999999999999999999999999999999999999977788889999999999999999999873
Q ss_pred CCCceEEeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeCCCC
Q 008233 419 GNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPP 498 (573)
Q Consensus 419 ~~~~~~~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~~~~ 498 (573)
.+++.+.|++|++||+++.++.+.+||++|++||++++..|++..|+|+.+.|.+|||+.....+|..||+|.+.++|+
T Consensus 381 -~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~ 459 (653)
T PRK13411 381 -VKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPP 459 (653)
T ss_pred -ccceeeeecccceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCC
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEEcCCccEEEEEEEcCCCCCCC
Q 008233 499 SPKGVPEINVCMDIDASSVLRVLVGVIMPGNPHP 532 (573)
Q Consensus 499 ~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~ 532 (573)
.+.|.++|+|+|++|.||+|+|++.+..+|++..
T Consensus 460 ~~~g~~~i~v~f~id~~Gil~v~a~d~~t~~~~~ 493 (653)
T PRK13411 460 APRGVPQIEVSFEIDVNGILKVSAQDQGTGREQS 493 (653)
T ss_pred CCCCCccEEEEEEECCCCeEEEEEeeccCCceEe
Confidence 9999889999999999999999999999987654
No 7
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.2e-88 Score=751.15 Aligned_cols=481 Identities=32% Similarity=0.526 Sum_probs=451.1
Q ss_pred eEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEe-CCceEEcCChHHHhhh-ccCccchhhHhhHhcCCCCCC
Q 008233 27 IAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFK-DEVPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVDTD 104 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~-~~~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~~~ 104 (573)
.+||||||||||++|++++|.+++++|.+|++.+||+|+|. ++++++| +.|+.+ .++|.++++++|||||+. +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG---~~A~~~~~~~p~~~i~~~Kr~iG~~--~ 77 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVG---QPAKRQAVTNPENTIFSIKRLMGRR--D 77 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEc---HHHHHhhhhCchhhHHHHHHHhCCC--c
Confidence 69999999999999999999999999999999999999996 6789999 999999 999999999999999998 5
Q ss_pred hhhhh-cCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHH
Q 008233 105 PVVHA-SKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRI 183 (573)
Q Consensus 105 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l 183 (573)
+.++. .+.+||+++.. .++...+. ++|. .++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++
T Consensus 78 ~~~~~~~~~~p~~~~~~-~~~~~~~~--~~~~--~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~ 152 (627)
T PRK00290 78 EEVQKDIKLVPYKIVKA-DNGDAWVE--IDGK--KYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQAT 152 (627)
T ss_pred hHHHHHhhcCCeEEEEc-CCCceEEE--ECCE--EEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHH
Confidence 66666 78999999987 56666666 7774 4999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cch
Q 008233 184 ERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGG 262 (573)
Q Consensus 184 ~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lGG 262 (573)
++||+.|||++++||+||+|||++|+.... .++++|||||||||||+|++++.++.++++++.|+. +||
T Consensus 153 ~~Aa~~AGl~v~~li~EptAAAl~y~~~~~----------~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG 222 (627)
T PRK00290 153 KDAGKIAGLEVLRIINEPTAAALAYGLDKK----------GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGG 222 (627)
T ss_pred HHHHHHcCCceEEEecchHHHHHHhhhccC----------CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcCh
Confidence 999999999999999999999999987653 268999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE-ecC----CeeEEEEEcHHHHHHHH
Q 008233 263 EDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD-LGN----GLKVSKNVTREEFEEVN 337 (573)
Q Consensus 263 ~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~-l~~----g~d~~~~itr~~fe~l~ 337 (573)
++||++|++|+.++|+.+++.++..+++.+.+|+.+||++|+.||.+.++.+.++ +.. +.++.++|||++|+++|
T Consensus 223 ~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~ 302 (627)
T PRK00290 223 DDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELT 302 (627)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHH
Confidence 9999999999999999999888888999999999999999999999999999998 543 26789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCCC
Q 008233 338 QKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDP 417 (573)
Q Consensus 338 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~~ 417 (573)
+|+++++.++|+++|+++++++.+|+.|+||||+||+|+|++.|+++| +..+....||++|||+|||++|+.+++.
T Consensus 303 ~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~~--- 378 (627)
T PRK00290 303 EDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD--- 378 (627)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcCC---
Confidence 999999999999999999999999999999999999999999999999 6778889999999999999999999874
Q ss_pred CCCCceEEeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeCCC
Q 008233 418 FGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIP 497 (573)
Q Consensus 418 ~~~~~~~~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~~~ 497 (573)
.+++.+.|++|++||+++.++.+.+|||+|+++|++++..|++..|+|+.+.|.+|||++....+|..||++.+.++|
T Consensus 379 --~~~~~~~d~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~ 456 (627)
T PRK00290 379 --VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIP 456 (627)
T ss_pred --ccceeeeeccceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCC
Confidence 568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEEEEEcCCccEEEEEEEcCCCCCCCc
Q 008233 498 PSPKGVPEINVCMDIDASSVLRVLVGVIMPGNPHPV 533 (573)
Q Consensus 498 ~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~~ 533 (573)
+.++|.++|+++|++|.||+|+|++.+..+|+...+
T Consensus 457 ~~~~g~~~i~v~f~~d~~gil~v~a~~~~~~~~~~~ 492 (627)
T PRK00290 457 PAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSI 492 (627)
T ss_pred CCCCCCceEEEEEEECCCceEEEEEEEccCCceeEE
Confidence 999998899999999999999999999999977553
No 8
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.8e-88 Score=749.14 Aligned_cols=484 Identities=31% Similarity=0.494 Sum_probs=449.1
Q ss_pred CCeEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEe-CCceEEcCChHHHhhh-ccCccchhhHhhHhcCCCC
Q 008233 25 PEIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFK-DEVPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVD 102 (573)
Q Consensus 25 ~~~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~-~~~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~ 102 (573)
+..+||||||||||++|++.+|.+++++|.+|++.+||+|+|. ++++++| ..|+.+ ..+|.++++++|||||+.+
T Consensus 38 ~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG---~~A~~~~~~~p~~ti~~~KrliG~~~ 114 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVG---QIAKRQAVVNPENTFFSVKRFIGRKM 114 (673)
T ss_pred CCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEEC---HHHHHhhhhCchhhhHHHHHhhCCCc
Confidence 3469999999999999999999999999999999999999995 5689999 999999 9999999999999999998
Q ss_pred CChhhhh-cCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHH
Q 008233 103 TDPVVHA-SKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLT 181 (573)
Q Consensus 103 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~ 181 (573)
++. +. .+.+||.++.. .++...+.++..+. .++|+++++++|++|++.|+.+++.++.++|||||++|++.||+
T Consensus 115 ~d~--~~~~~~~~~~v~~~-~~~~v~~~~~~~~~--~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~ 189 (673)
T PLN03184 115 SEV--DEESKQVSYRVVRD-ENGNVKLDCPAIGK--QFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRT 189 (673)
T ss_pred chh--hhhhhcCCeEEEec-CCCcEEEEEecCCe--EEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHH
Confidence 763 34 77889999877 56777776333343 59999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-c
Q 008233 182 RIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-I 260 (573)
Q Consensus 182 ~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-l 260 (573)
++++||+.|||++++||+||+|||++|+.... .+.++||||+||||||+|++++.++.++|+++.|+. +
T Consensus 190 a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~----------~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~L 259 (673)
T PLN03184 190 ATKDAGRIAGLEVLRIINEPTAASLAYGFEKK----------SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHL 259 (673)
T ss_pred HHHHHHHHCCCCeEEEeCcHHHHHHHhhcccC----------CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCcc
Confidence 99999999999999999999999999987653 267899999999999999999999999999999999 9
Q ss_pred chHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE-ecC----CeeEEEEEcHHHHHH
Q 008233 261 GGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD-LGN----GLKVSKNVTREEFEE 335 (573)
Q Consensus 261 GG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~-l~~----g~d~~~~itr~~fe~ 335 (573)
||++||++|++|+.++|+.+++.++..+++.+.+|+.+||++|+.||.+.++.+.++ +.. +.++.++|||++|++
T Consensus 260 GG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~ 339 (673)
T PLN03184 260 GGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEE 339 (673)
T ss_pred CHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHH
Confidence 999999999999999999998888888999999999999999999999999999887 532 257899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCC
Q 008233 336 VNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGIN 415 (573)
Q Consensus 336 l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~ 415 (573)
+|+|+++++..+|+++|+++++++.+|+.|+||||+||+|+||+.|+++| +..+....||++|||+|||++|+.+++.
T Consensus 340 l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~- 417 (673)
T PLN03184 340 LCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAGE- 417 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhccC-
Confidence 99999999999999999999999999999999999999999999999999 6677788999999999999999999874
Q ss_pred CCCCCCceEEeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeC
Q 008233 416 DPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITG 495 (573)
Q Consensus 416 ~~~~~~~~~~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~ 495 (573)
.+++.+.|++|++||+++.++.+.+|||+|++||++++..|++..|+|+.+.|.+|||+.....+|..||+|.|.+
T Consensus 418 ----~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~ 493 (673)
T PLN03184 418 ----VSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDG 493 (673)
T ss_pred ----ccceEEEecccccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCEEEEEEEEcCCccEEEEEEEcCCCCCCC
Q 008233 496 IPPSPKGVPEINVCMDIDASSVLRVLVGVIMPGNPHP 532 (573)
Q Consensus 496 ~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~ 532 (573)
+++.+.|.++|+|+|++|.+|+|+|++.+..+|++..
T Consensus 494 i~~~~~g~~~i~v~f~id~~GiL~V~a~~~~t~~~~~ 530 (673)
T PLN03184 494 IPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQD 530 (673)
T ss_pred CCCCCCCCceEEEEEEeCCCCeEEEEEEecCCCeEEE
Confidence 9999999889999999999999999999999987654
No 9
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=3.9e-88 Score=740.09 Aligned_cols=476 Identities=30% Similarity=0.443 Sum_probs=440.4
Q ss_pred EEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeCC-ceEEcCChHHHhhh-ccCccchhhHhhHhcCCCCCCh
Q 008233 28 AIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDE-VPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVDTDP 105 (573)
Q Consensus 28 vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~-~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~~~~ 105 (573)
+||||||||||+||++.+|++++++|.+|++.+||+|+|.++ .++|| ..|+.+ ..+|.++++++|||+|+.+.+.
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG---~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~ 77 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVG---KEALAAAAEDPKNTISSVKRLMGRSIEDI 77 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEec---HHHHHhhhhChhhhHHHHHHHhCCCccch
Confidence 589999999999999999999999999999999999999644 89999 999999 9999999999999999988764
Q ss_pred hhhhcCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 008233 106 VVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIER 185 (573)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~ 185 (573)
.. .+.+||.++.. .++.+.+. +.+. .++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++
T Consensus 78 ~~--~~~~~~~~~~~-~~~~~~~~--~~~~--~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~ 150 (599)
T TIGR01991 78 KT--FSILPYRFVDG-PGEMVRLR--TVQG--TVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKD 150 (599)
T ss_pred hh--cccCCEEEEEc-CCCceEEE--eCCC--EEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 32 56789998766 56777776 5543 499999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cchHH
Q 008233 186 ACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 264 (573)
Q Consensus 186 Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lGG~~ 264 (573)
||+.|||++++||+||+|||++|+.... .+.++||||+||||||+|++++.++.++|+++.|+. +||++
T Consensus 151 Aa~~AGl~v~~li~EPtAAAlay~~~~~----------~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d 220 (599)
T TIGR01991 151 AARLAGLNVLRLLNEPTAAAVAYGLDKA----------SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDD 220 (599)
T ss_pred HHHHcCCCceEEecCHHHHHHHHhhccC----------CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHH
Confidence 9999999999999999999999987653 268999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEEecCCeeEEEEEcHHHHHHHHHHHHHHH
Q 008233 265 LLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVDLGNGLKVSKNVTREEFEEVNQKVFEKC 344 (573)
Q Consensus 265 iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~l~~g~d~~~~itr~~fe~l~~~~~~~~ 344 (573)
||++|++|+.+++ +.+...+++.+.+|+.+||++|+.||.+.++.+.++. +|.++.++|||++|+++++|+++++
T Consensus 221 ~D~~l~~~l~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~-~g~~~~~~itr~efe~l~~~ll~~i 295 (599)
T TIGR01991 221 FDHALAKWILKQL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL-DGKDFKGKLTRDEFEALIQPLVQKT 295 (599)
T ss_pred HHHHHHHHHHHhh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE-CCcEEEEEEeHHHHHHHHHHHHHHH
Confidence 9999999999765 3344567889999999999999999999999888874 7889999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCCCCCCCceE
Q 008233 345 GSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLL 424 (573)
Q Consensus 345 ~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~~ 424 (573)
.++++++|+++++.+.+|+.|+||||+||+|+|++.|+++| +..+....||++|||+|||++|+.+++. +..+++.
T Consensus 296 ~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~~~---~~~~~~~ 371 (599)
T TIGR01991 296 LSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGN---RIGNDLL 371 (599)
T ss_pred HHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhccc---cccCceE
Confidence 99999999999999999999999999999999999999999 5666778999999999999999999875 3356889
Q ss_pred EeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeCCCCCCCCCC
Q 008233 425 TIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVP 504 (573)
Q Consensus 425 ~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~~~~~~~g~~ 504 (573)
+.|++|++||+++.++.+.+|||+|++||++++..|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.+.|.+
T Consensus 372 l~dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~ 451 (599)
T TIGR01991 372 LLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAA 451 (599)
T ss_pred EEEeeeeeeEEEecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEcCCccEEEEEEEcCCCCCCC
Q 008233 505 EINVCMDIDASSVLRVLVGVIMPGNPHP 532 (573)
Q Consensus 505 ~i~v~~~id~~g~l~v~~~~~~~g~~~~ 532 (573)
+|+|+|++|.||+|+|++.+..+|++..
T Consensus 452 ~i~v~f~id~~gil~V~a~~~~t~~~~~ 479 (599)
T TIGR01991 452 RIRVTFQVDADGLLTVSAQEQSTGVEQS 479 (599)
T ss_pred cEEEEEEECCCCeEEEEEEECCCCcEEE
Confidence 9999999999999999999999998755
No 10
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-90 Score=721.14 Aligned_cols=532 Identities=35% Similarity=0.545 Sum_probs=492.8
Q ss_pred CCCCeEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeCCceEEcCChHHHhhh-ccCccchhhHhhHhcCCC
Q 008233 23 PFPEIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRV 101 (573)
Q Consensus 23 ~~~~~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~ 101 (573)
+..+.++|||||||+++++++.+++++++.|++|++.+||+++|.++++++| ++|+.+ .++|.++++++||++|+.
T Consensus 4 ~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg---~~a~~qv~~np~ntv~~~krliGr~ 80 (620)
T KOG0101|consen 4 TPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIG---DAAKNQVARNPDNTVFDAKRLIGRF 80 (620)
T ss_pred ccccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchh---hhhhhhhhcCCcceeeehhhhcCcc
Confidence 3456899999999999999999999999999999999999999999999999 999999 999999999999999999
Q ss_pred CCChhhhh-cCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHH
Q 008233 102 DTDPVVHA-SKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQL 180 (573)
Q Consensus 102 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr 180 (573)
++++.++. +++|||.+... .++.+.++...+|+.+.++|+++.++.|..+++.|+.+++..+.++|+|||+||++.||
T Consensus 81 f~d~~v~~~~k~~pf~V~~~-~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr 159 (620)
T KOG0101|consen 81 FDDPEVQSDMKLWPFKVISD-QGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQR 159 (620)
T ss_pred ccchhhHhHhhcCCcccccc-cCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHH
Confidence 99999999 89999999855 56788998767788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-
Q 008233 181 TRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA- 259 (573)
Q Consensus 181 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~- 259 (573)
+++.+|+.+|||+++++|+||+|||++|++.+... ...++||+|+||||||+|++.+.+|.+.++++.|+.
T Consensus 160 ~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~--------~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~ 231 (620)
T KOG0101|consen 160 AATKDAALIAGLNVLRIINEPTAAALAYGLDKKVL--------GERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTH 231 (620)
T ss_pred HHHHHHHHhcCCceeeeecchHHHHHHhhcccccc--------ceeeEEEEEcCCCceeeeeEEeccchhhhhhhccccc
Confidence 99999999999999999999999999999777633 378899999999999999999999988999999999
Q ss_pred cchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE-ecCCeeEEEEEcHHHHHHHHH
Q 008233 260 IGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD-LGNGLKVSKNVTREEFEEVNQ 338 (573)
Q Consensus 260 lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~-l~~g~d~~~~itr~~fe~l~~ 338 (573)
+||.+||++|++|+..+|+++++.++..+++++++|+.+||.+|+.||....+++.++ |++|.|+...|||.+|++++.
T Consensus 232 lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~ 311 (620)
T KOG0101|consen 232 LGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNA 311 (620)
T ss_pred ccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCCCC
Q 008233 339 KVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPF 418 (573)
Q Consensus 339 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~~~ 418 (573)
+++.++..+++++|+++++++.+|+.|+||||++|+|.+|..++++|+++++..++||||+||+|||++|+.+++.....
T Consensus 312 dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~ 391 (620)
T KOG0101|consen 312 DLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLN 391 (620)
T ss_pred HHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCcccc
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999865433
Q ss_pred CCCceEEeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeCCCC
Q 008233 419 GNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPP 498 (573)
Q Consensus 419 ~~~~~~~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~~~~ 498 (573)
. .++.+.|+.|.++||++.++.|.++|++|+.+|++++++|++..|||+.+.|.+|||++.+.++|.++|.|.+.++||
T Consensus 392 ~-~~l~lid~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gipp 470 (620)
T KOG0101|consen 392 I-QDLLLIDVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPP 470 (620)
T ss_pred c-cceeeeecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCc
Confidence 3 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEEcCCccEEEEEEEcCCCCCCCcccceee-e---c---ccccCCc--cchHHHHHHHhcCcceeec
Q 008233 499 SPKGVPEINVCMDIDASSVLRVLVGVIMPGNPHPVIPVMEV-R---L---PTVDDGH--GWCAEALNRAYGSTLDLET 567 (573)
Q Consensus 499 ~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~~~~~~~~-~---~---~~~~~~~--~~~~~~~~~~~~~~~~~~~ 567 (573)
+|.|.+.|+++|.+|.+|+|.|++.++.+|+..++..+... + . -|+.+++ ...+|+.-.+....++||+
T Consensus 471 aprgvp~IevtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~ 548 (620)
T KOG0101|consen 471 APRGVPQIEVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLES 548 (620)
T ss_pred cccCCcceeEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999998764422211 0 0 2233443 4455566666666666664
No 11
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=4.4e-87 Score=733.07 Aligned_cols=475 Identities=28% Similarity=0.442 Sum_probs=436.5
Q ss_pred CCeEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeCCceEEcCChHHHhhh-ccCccchhhHhhHhcCCCCC
Q 008233 25 PEIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVDT 103 (573)
Q Consensus 25 ~~~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~~ 103 (573)
...+||||||||||+||++.+|+++++++.+|++.+||+|+|.+++++|| ..|+.+ ..+|.++++++|||+|+.++
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG---~~A~~~~~~~p~~ti~~~KrliG~~~~ 94 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVG---YEARANAAQDPKNTISSVKRFMGRSLA 94 (616)
T ss_pred CCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEc---HHHHHhhHhCchhhHHHHHHHhCCCch
Confidence 34799999999999999999999999999999999999999988889999 999999 99999999999999999887
Q ss_pred Chhhhh-cCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHH
Q 008233 104 DPVVHA-SKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTR 182 (573)
Q Consensus 104 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~ 182 (573)
+. +. .+.+||.+... .+|.+.+. +.+. .++|+++++++|++|++.|+.+++.++.++|||||++|++.||++
T Consensus 95 d~--~~~~~~~~~~~~~~-~~g~~~~~--~~~~--~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a 167 (616)
T PRK05183 95 DI--QQRYPHLPYQFVAS-ENGMPLIR--TAQG--LKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQA 167 (616)
T ss_pred hh--hhhhhcCCeEEEec-CCCceEEE--ecCC--eEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHH
Confidence 63 33 56789988776 56777777 5443 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cc
Q 008233 183 IERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IG 261 (573)
Q Consensus 183 l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lG 261 (573)
+++||+.|||++++||+||+|||++|+.... .++++||||+||||||+|++++.++.++|+++.|+. +|
T Consensus 168 ~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~----------~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lG 237 (616)
T PRK05183 168 TKDAARLAGLNVLRLLNEPTAAAIAYGLDSG----------QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALG 237 (616)
T ss_pred HHHHHHHcCCCeEEEecchHHHHHHhhcccC----------CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcC
Confidence 9999999999999999999999999987643 268999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEEecCCeeEEEEEcHHHHHHHHHHHH
Q 008233 262 GEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVDLGNGLKVSKNVTREEFEEVNQKVF 341 (573)
Q Consensus 262 G~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~l~~g~d~~~~itr~~fe~l~~~~~ 341 (573)
|++||++|++|+.++++. +...+++.+.+|+.+||++|+.||.+.++.+.++..++ .|||++|+++++|++
T Consensus 238 G~d~D~~l~~~~~~~~~~----~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~-----~itr~efe~l~~~l~ 308 (616)
T PRK05183 238 GDDFDHLLADWILEQAGL----SPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALWQG-----EITREQFNALIAPLV 308 (616)
T ss_pred HHHHHHHHHHHHHHHcCC----CcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCC-----eEcHHHHHHHHHHHH
Confidence 999999999999987753 33357889999999999999999999998888862222 499999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCCCCCCC
Q 008233 342 EKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL 421 (573)
Q Consensus 342 ~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~ 421 (573)
+++.++++++|+++++.+.+|+.|+||||+||+|+|++.|+++| +..+..+.||++|||+|||++|+.+++. +..+
T Consensus 309 ~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeaVA~GAAi~a~~l~~~---~~~~ 384 (616)
T PRK05183 309 KRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGN---KPDS 384 (616)
T ss_pred HHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHh-ccCcCcCCCchHHHHHHHHHHHHHhccc---cccC
Confidence 99999999999999999999999999999999999999999999 5566678999999999999999999874 2346
Q ss_pred ceEEeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeCCCCCCC
Q 008233 422 DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPK 501 (573)
Q Consensus 422 ~~~~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~~~~~~~ 501 (573)
++.+.|++|++||+++.++.+.+|||+|++||++++..|++..|+|+.+.|.+|||++..+.+|..||++.+.++|+.+.
T Consensus 385 ~~~l~dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~ 464 (616)
T PRK05183 385 DMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAA 464 (616)
T ss_pred ceEEEeeccccccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEEcCCccEEEEEEEcCCCCCCC
Q 008233 502 GVPEINVCMDIDASSVLRVLVGVIMPGNPHP 532 (573)
Q Consensus 502 g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~ 532 (573)
|.++|+|+|++|.||+|+|++.+..+|++..
T Consensus 465 g~~~i~v~f~~d~~Gil~V~a~~~~~~~~~~ 495 (616)
T PRK05183 465 GAARIRVTFQVDADGLLSVTAMEKSTGVEAS 495 (616)
T ss_pred CCccEEEEEEECCCCeEEEEEEEcCCCcEEE
Confidence 9889999999999999999999999998754
No 12
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=6.8e-87 Score=735.05 Aligned_cols=480 Identities=33% Similarity=0.508 Sum_probs=446.5
Q ss_pred eEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeC-CceEEcCChHHHhhh-ccCccchhhHhhHhcCCCCCC
Q 008233 27 IAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKD-EVPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVDTD 104 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~-~~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~~~ 104 (573)
.+||||||||||++|++++|.+.++.|.+|++.+||+|+|.+ +++++| +.|+.+ ..+|.++++++||+||+.+++
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG---~~A~~~~~~~p~~~i~~~Kr~iG~~~~~ 77 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVG---QPAKRQAVTNPENTIYSIKRFMGRRFDE 77 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEEC---HHHHHhhhhCchhhhHHHHHHhCCCchH
Confidence 379999999999999999999999999999999999999974 489999 999999 999999999999999998843
Q ss_pred hhhhh-cCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHH
Q 008233 105 PVVHA-SKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRI 183 (573)
Q Consensus 105 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l 183 (573)
++. .+.+||.+ .. .++...+. ++|. .++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++
T Consensus 78 --~~~~~~~~~~~v-~~-~~~~~~~~--v~~~--~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~ 149 (595)
T TIGR02350 78 --VTEEAKRVPYKV-VG-DGGDVRVK--VDGK--EYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQAT 149 (595)
T ss_pred --HHHHhhcCCeeE-Ec-CCCceEEE--ECCE--EecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHH
Confidence 555 78899994 33 46777777 7764 4999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cch
Q 008233 184 ERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGG 262 (573)
Q Consensus 184 ~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lGG 262 (573)
++||+.|||++++||+||+|||++|+..... .++++||||+||||||+|++++.++.++|+++.|+. +||
T Consensus 150 ~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~---------~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG 220 (595)
T TIGR02350 150 KDAGKIAGLEVLRIINEPTAAALAYGLDKSK---------KDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGG 220 (595)
T ss_pred HHHHHHcCCceEEEecchHHHHHHHhhcccC---------CCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCc
Confidence 9999999999999999999999999876532 278999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE-ecC----CeeEEEEEcHHHHHHHH
Q 008233 263 EDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD-LGN----GLKVSKNVTREEFEEVN 337 (573)
Q Consensus 263 ~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~-l~~----g~d~~~~itr~~fe~l~ 337 (573)
++||++|++|+.++|+++++.++..+++.+.+|+.+||++|+.||.+.++.+.++ +.. +.++.++|||++|++++
T Consensus 221 ~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~ 300 (595)
T TIGR02350 221 DDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELT 300 (595)
T ss_pred hhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHH
Confidence 9999999999999999999888888899999999999999999999999999988 533 35789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCCC
Q 008233 338 QKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDP 417 (573)
Q Consensus 338 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~~ 417 (573)
+|+++++.++|+++|+++++++.+|+.|+||||+||+|+|++.|+++| +..+....||++|||+|||++|+.+++.
T Consensus 301 ~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f-~~~~~~~~~pdeava~GAa~~aa~l~~~--- 376 (595)
T TIGR02350 301 ADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD--- 376 (595)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHh-CCcccCCcCcHHHHHHHHHHHHHHhcCC---
Confidence 999999999999999999999999999999999999999999999999 4778889999999999999999999874
Q ss_pred CCCCceEEeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeCCC
Q 008233 418 FGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIP 497 (573)
Q Consensus 418 ~~~~~~~~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~~~ 497 (573)
.+++.+.|++|++||+++.++.+.+||++|+++|++++.+|++..|+|+.+.|.+|+|++....+|..||++.+.+++
T Consensus 377 --~~~~~~~d~~~~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~ 454 (595)
T TIGR02350 377 --VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIP 454 (595)
T ss_pred --cccceeeecccceeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCC
Confidence 568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEEEEEcCCccEEEEEEEcCCCCCCC
Q 008233 498 PSPKGVPEINVCMDIDASSVLRVLVGVIMPGNPHP 532 (573)
Q Consensus 498 ~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~ 532 (573)
+.++|.++|+++|++|.+|+|+|++.+..+|++..
T Consensus 455 ~~~~g~~~i~v~f~~d~~G~l~v~~~~~~~~~~~~ 489 (595)
T TIGR02350 455 PAPRGVPQIEVTFDIDANGILHVSAKDKGTGKEQS 489 (595)
T ss_pred CCCCCCceEEEEEEEcCCCeEEEEEEEccCCceEE
Confidence 99999889999999999999999999999987754
No 13
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1.9e-86 Score=731.26 Aligned_cols=483 Identities=31% Similarity=0.505 Sum_probs=447.3
Q ss_pred CeEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeC-CceEEcCChHHHhhh-ccCccchhhHhhHhcCCCCC
Q 008233 26 EIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKD-EVPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVDT 103 (573)
Q Consensus 26 ~~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~-~~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~~ 103 (573)
..+||||||||||++|++.+|.+.+++|.+|++.+||+|+|.+ +++++| +.|+.. ..+|.++++++||+||+.++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG---~~A~~~~~~~p~~ti~~~KrliG~~~~ 78 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVG---QIAKRQAVINPENTFYSVKRFIGRKFS 78 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEEC---HHHHHhHHhCccceehhhHHhcCCChH
Confidence 3699999999999999999999999999999999999999964 579999 999999 99999999999999999886
Q ss_pred Chhhhh-cCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHH
Q 008233 104 DPVVHA-SKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTR 182 (573)
Q Consensus 104 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~ 182 (573)
+ ++. .+.+||.+... .++...+..+..+ ..++|+++++++|++|++.|+.+++.++.++|||||++|++.||++
T Consensus 79 ~--~~~~~~~~~~~v~~~-~~g~i~~~~~~~~--~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a 153 (621)
T CHL00094 79 E--ISEEAKQVSYKVKTD-SNGNIKIECPALN--KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQA 153 (621)
T ss_pred H--HHhhhhcCCeEEEEC-CCCCEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHH
Confidence 5 344 67799999876 5677777632334 4599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cc
Q 008233 183 IERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IG 261 (573)
Q Consensus 183 l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lG 261 (573)
+++||+.|||++++||+||+|||++|+.... .+.++||||+||||||+|++++.++.++|+++.|+. +|
T Consensus 154 ~~~Aa~~AGl~v~~li~EptAAAlay~~~~~----------~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lG 223 (621)
T CHL00094 154 TKDAGKIAGLEVLRIINEPTAASLAYGLDKK----------NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLG 223 (621)
T ss_pred HHHHHHHcCCceEEEeccHHHHHHHhccccC----------CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcC
Confidence 9999999999999999999999999987643 267899999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE-ecC----CeeEEEEEcHHHHHHH
Q 008233 262 GEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD-LGN----GLKVSKNVTREEFEEV 336 (573)
Q Consensus 262 G~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~-l~~----g~d~~~~itr~~fe~l 336 (573)
|++||++|++|+.++|+++++.++..+++.+.+|+.+||++|+.||.+.++.+.++ +.. +.++..+|||++||++
T Consensus 224 G~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l 303 (621)
T CHL00094 224 GDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEEL 303 (621)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHH
Confidence 99999999999999999999888888999999999999999999999999999988 542 2578899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCC
Q 008233 337 NQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGIND 416 (573)
Q Consensus 337 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~ 416 (573)
++|+++++..+|+++|+++++.+.+|+.|+|+||+||+|.|++.|+++| +..+....||++|||+|||++|+.+++.
T Consensus 304 ~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~ls~~-- 380 (621)
T CHL00094 304 CSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE-- 380 (621)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHhcCC--
Confidence 9999999999999999999999999999999999999999999999999 5678889999999999999999998873
Q ss_pred CCCCCceEEeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeCC
Q 008233 417 PFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGI 496 (573)
Q Consensus 417 ~~~~~~~~~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~~ 496 (573)
.+++.+.|++|++||+++.++.+.+|||+|+++|++++..|++..++|+.+.|.+|||++..+.+|..||+|.+.++
T Consensus 381 ---~~~~~~~d~~~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~ 457 (621)
T CHL00094 381 ---VKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGI 457 (621)
T ss_pred ---ccceeeeeeeceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEEEEEcCCccEEEEEEEcCCCCCCC
Q 008233 497 PPSPKGVPEINVCMDIDASSVLRVLVGVIMPGNPHP 532 (573)
Q Consensus 497 ~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~ 532 (573)
|+.+.|.++|+++|++|.+|+|+|++.+..+|++..
T Consensus 458 ~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~ 493 (621)
T CHL00094 458 PPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQS 493 (621)
T ss_pred CCCCCCCCcEEEEEEECCCCeEEEEEeeccCCceee
Confidence 999999889999999999999999999999987654
No 14
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-89 Score=683.84 Aligned_cols=486 Identities=33% Similarity=0.535 Sum_probs=467.2
Q ss_pred CCCCeEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEE-eCCceEEcCChHHHhhh-ccCccchhhHhhHhcCC
Q 008233 23 PFPEIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTF-KDEVPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGR 100 (573)
Q Consensus 23 ~~~~~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~-~~~~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~ 100 (573)
.....++|||+|||||++|+..++++.++.|..|.|.+||+++| .++++++| ..|+.+ ..+|.++++.-||+||+
T Consensus 24 ~~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg---~~akrqav~n~~ntffatKrligR 100 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVG---MPAKRQAVTNPENTFFATKRLIGR 100 (640)
T ss_pred CCCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEec---chhhhhhccCCCceEEEehhhhhh
Confidence 34568999999999999999999999999999999999999999 56699999 999999 99999999999999999
Q ss_pred CCCChhhhh-cCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHH
Q 008233 101 VDTDPVVHA-SKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ 179 (573)
Q Consensus 101 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~q 179 (573)
+|+++.+++ .+..||++++. .+|...++ ..|.. ++|.++.+++|.+++++|+.+++..+..+|+||||||++.|
T Consensus 101 rf~d~evq~~~k~vpyKiVk~-~ngdaw~e--~~G~~--~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsq 175 (640)
T KOG0102|consen 101 RFDDPEVQKDIKQVPYKIVKA-SNGDAWVE--ARGKQ--YSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQ 175 (640)
T ss_pred hccCHHHHHHHHhCCcceEEc-cCCcEEEE--eCCeE--ecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHH
Confidence 999999999 99999999996 89999999 57755 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc
Q 008233 180 LTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA 259 (573)
Q Consensus 180 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~ 259 (573)
|+++++|.++||+++++++|||+|||++|+++... ++.++|||+||||||+++..+.+++++|.++.||.
T Consensus 176 RqaTkdag~iagl~vlrvineptaaalaygld~k~----------~g~iaV~dLgggtfdisilei~~gvfevksTngdt 245 (640)
T KOG0102|consen 176 RQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKE----------DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDT 245 (640)
T ss_pred HHHhHhhhhhccceeeccCCccchhHHhhcccccC----------CCceEEEEcCCceeeeeeehhccceeEEEeccCcc
Confidence 99999999999999999999999999999998764 68999999999999999999999999999999999
Q ss_pred -cchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE-ecCC----eeEEEEEcHHHH
Q 008233 260 -IGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD-LGNG----LKVSKNVTREEF 333 (573)
Q Consensus 260 -lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~-l~~g----~d~~~~itr~~f 333 (573)
+||.|||..+++|+..+|+...++++..+.++++||+.++|++|++||...++.+.++ +..+ ..+++++||.+|
T Consensus 246 flggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~ef 325 (640)
T KOG0102|consen 246 HLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEF 325 (640)
T ss_pred ccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 4433 568999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcC
Q 008233 334 EEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 334 e~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
|+++.+++++.++++.++|+++++..++|+.|+||||.+|+|.+++.+++.| ++......||+++||.|||+++..+++
T Consensus 326 e~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~g 404 (640)
T KOG0102|consen 326 EELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSG 404 (640)
T ss_pred HHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhc
Confidence 9999999999999999999999999999999999999999999999999999 788888999999999999999999998
Q ss_pred CCCCCCCCceEEeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEE
Q 008233 414 INDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKI 493 (573)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i 493 (573)
. .+++.+.|++|.++|+++.++.|..|+++++.||.+++..|++..|+|+.+.|.+++|+++...+|.++|+|.+
T Consensus 405 e-----VkdvlLLdVtpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l 479 (640)
T KOG0102|consen 405 E-----VKDVLLLDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFIL 479 (640)
T ss_pred c-----ccceeeeecchHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeee
Confidence 5 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCEEEEEEEEcCCccEEEEEEEcCCCCCCC
Q 008233 494 TGIPPSPKGVPEINVCMDIDASSVLRVLVGVIMPGNPHP 532 (573)
Q Consensus 494 ~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~ 532 (573)
.++||.|+|.|+|+|+|.+|.||+++|+|.++.+|++..
T Consensus 480 ~gipp~pRgvpqieVtfDIdanGI~~vsA~dk~t~K~qs 518 (640)
T KOG0102|consen 480 QGIPPAPRGVPQIEVTFDIDANGIGTVSAKDKGTGKSQS 518 (640)
T ss_pred cccCCCCCCCCceeEEEeecCCceeeeehhhcccCCccc
Confidence 999999999999999999999999999999999999876
No 15
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=9.9e-84 Score=700.23 Aligned_cols=449 Identities=27% Similarity=0.409 Sum_probs=398.8
Q ss_pred CeEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeCCceEEcCChHHHhhhccCccchhhHhhHhcCCCCCCh
Q 008233 26 EIAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRVDTDP 105 (573)
Q Consensus 26 ~~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~~~~A~~~~~~p~~~i~~~k~~lg~~~~~~ 105 (573)
..+||||||||||+||++.++++++++|.+|++.+||+|+|.++++++| ..| +++++||++|+.+++.
T Consensus 19 ~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG---~~A---------ti~~~KrliG~~~~~~ 86 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIG---NNK---------GLRSIKRLFGKTLKEI 86 (595)
T ss_pred ceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEEC---chh---------hHHHHHHHhCCCchhh
Confidence 4799999999999999999999999999999999999999988889999 655 7899999999988752
Q ss_pred ----hhhh-cCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHH
Q 008233 106 ----VVHA-SKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQL 180 (573)
Q Consensus 106 ----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr 180 (573)
.+.. .+.+ ... .++...+. +.+. .++|+++++++|++|++.|+.+++.++.++|||||++|++.||
T Consensus 87 ~~~~~~~~~~k~~----~~~-~~~~~~~~--~~~~--~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR 157 (595)
T PRK01433 87 LNTPALFSLVKDY----LDV-NSSELKLN--FANK--QLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAAR 157 (595)
T ss_pred ccchhhHhhhhhe----eec-CCCeeEEE--ECCE--EEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHH
Confidence 2211 1111 111 12222333 4553 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-
Q 008233 181 TRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA- 259 (573)
Q Consensus 181 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~- 259 (573)
+++++||+.|||+++++|+||+|||++|+.... ..+++||||+||||||+|++++.++.++|+++.|+.
T Consensus 158 ~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~----------~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~ 227 (595)
T PRK01433 158 GEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN----------QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNM 227 (595)
T ss_pred HHHHHHHHHcCCCEEEEecCcHHHHHHHhcccC----------CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcc
Confidence 999999999999999999999999999987643 257899999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEEecCCeeEEEEEcHHHHHHHHHH
Q 008233 260 IGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVDLGNGLKVSKNVTREEFEEVNQK 339 (573)
Q Consensus 260 lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~l~~g~d~~~~itr~~fe~l~~~ 339 (573)
+||++||.+|++|+.++|.... +.+ .++.||++|+.||.+....+ ..++|||++|+++++|
T Consensus 228 lGG~d~D~~l~~~~~~~~~~~~------~~~----~~~~~ekaK~~LS~~~~~~~---------~~~~itr~efe~l~~~ 288 (595)
T PRK01433 228 LGGNDIDVVITQYLCNKFDLPN------SID----TLQLAKKAKETLTYKDSFNN---------DNISINKQTLEQLILP 288 (595)
T ss_pred cChHHHHHHHHHHHHHhcCCCC------CHH----HHHHHHHHHHhcCCCccccc---------ceEEEcHHHHHHHHHH
Confidence 9999999999999998874321 222 23459999999998775321 1789999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCCCCC
Q 008233 340 VFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFG 419 (573)
Q Consensus 340 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~~~~ 419 (573)
+++++..+++++|++++ ..+|+.|+||||+||+|+|++.|+++| +.++..+.||++|||+|||++|+.+++.
T Consensus 289 l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----- 360 (595)
T PRK01433 289 LVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----- 360 (595)
T ss_pred HHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC-----
Confidence 99999999999999998 568999999999999999999999999 5677788999999999999999998763
Q ss_pred CCceEEeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeCCCCC
Q 008233 420 NLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPS 499 (573)
Q Consensus 420 ~~~~~~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~~~~~ 499 (573)
..++.+.|++|++||+++.++.+.+||+||++||+++++.|++..|+|+.+.|.+|||++....+|..||+|.+.++|+.
T Consensus 361 ~~~~~l~Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~ 440 (595)
T PRK01433 361 HTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPM 440 (595)
T ss_pred ccceEEEEecccceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEEcCCccEEEEEEEcCCCCCCC
Q 008233 500 PKGVPEINVCMDIDASSVLRVLVGVIMPGNPHP 532 (573)
Q Consensus 500 ~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~ 532 (573)
+.|.++|+|+|++|.||+|+|++.+..+|++..
T Consensus 441 ~~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~ 473 (595)
T PRK01433 441 KAGSIRAEVTFAIDADGILSVSAYEKISNTSHA 473 (595)
T ss_pred CCCCccEEEEEEECCCCcEEEEEEEcCCCcEEE
Confidence 999889999999999999999999999998755
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=1.7e-83 Score=714.36 Aligned_cols=488 Identities=34% Similarity=0.540 Sum_probs=446.4
Q ss_pred EEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeCCceEEcCChHHHhhh-ccCccchhhHhhHhcCCCCCChh
Q 008233 28 AIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVDTDPV 106 (573)
Q Consensus 28 vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~~~~~ 106 (573)
|||||||||||+||++.++.++++.+..|+|++||+|+|.++++++| ..|... .++|.++++++|||||+.++++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G---~~a~~~~~~~~~~~~~~~k~liG~~~~~~~ 77 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVG---EDAKSQMIRNPKNTIYNLKRLIGRKFDDPD 77 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEET---HHHHHTTTTSGGGEEESGGGTTTSBTTSHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCC---cchhhhcccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999999998899999 999998 89999999999999999999998
Q ss_pred hhh-cCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 008233 107 VHA-SKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIER 185 (573)
Q Consensus 107 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~ 185 (573)
++. .+.+||.+..+ ++|.+.+++...|....++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++
T Consensus 78 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~ 156 (602)
T PF00012_consen 78 VQKEKKKFPYKVVED-PDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRD 156 (602)
T ss_dssp HHHHHTTSSSEEEEE-TTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHH
T ss_pred cchhhhccccccccc-ccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccc
Confidence 988 88999999887 7889999865668777899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cchHH
Q 008233 186 ACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 264 (573)
Q Consensus 186 Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lGG~~ 264 (573)
||+.|||++++||+||+|||++|+..+.. .++++|||||||||+|+|++++.++.++++++.|+. +||++
T Consensus 157 Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~---------~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~ 227 (602)
T PF00012_consen 157 AAELAGLNVLRLINEPTAAALAYGLERSD---------KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRD 227 (602)
T ss_dssp HHHHTT-EEEEEEEHHHHHHHHTTTTSSS---------SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHH
T ss_pred cccccccccceeecccccccccccccccc---------cccceeccccccceEeeeehhcccccccccccccccccccce
Confidence 99999999999999999999999877654 279999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCC--CceEEEEEE-ecC-CeeEEEEEcHHHHHHHHHHH
Q 008233 265 LLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSS--ETSVQINVD-LGN-GLKVSKNVTREEFEEVNQKV 340 (573)
Q Consensus 265 iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~--~~~~~i~i~-l~~-g~d~~~~itr~~fe~l~~~~ 340 (573)
||++|++|+.++|+.+++.++..+++.+.+|+.+||++|+.||. +.+..+.++ +.+ |.++.++|||++|+++++|+
T Consensus 228 ~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~ 307 (602)
T PF00012_consen 228 FDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPL 307 (602)
T ss_dssp HHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHH
T ss_pred ecceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccc
Confidence 99999999999999998888888999999999999999999999 667777777 666 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCCCCCC
Q 008233 341 FEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGN 420 (573)
Q Consensus 341 ~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~ 420 (573)
++++.++|+++|++++++..+|++|+|+||+||+|+|++.|++.|+ ..+..+.||++|||+|||++|+.+++. ++.
T Consensus 308 ~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~~---~~~ 383 (602)
T PF00012_consen 308 LERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSGS---FRV 383 (602)
T ss_dssp HHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHTS---CSS
T ss_pred ccccccccccccccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhccc---ccc
Confidence 9999999999999999999999999999999999999999999995 788889999999999999999999875 446
Q ss_pred CceEEeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeCCCCCC
Q 008233 421 LDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSP 500 (573)
Q Consensus 421 ~~~~~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~~~~~~ 500 (573)
+++.+.|++|++||++..++.+.+++++|+++|...+..|++..++|+.+.|.||+|+.....+|..||++.+.++++.+
T Consensus 384 ~~~~~~d~~~~~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~ 463 (602)
T PF00012_consen 384 KDIKIIDVTPFSIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAP 463 (602)
T ss_dssp TSSCESEBESSEEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSS
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhccccccccceeeecccccccccccccccccccccccc
Confidence 78889999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred CCCCEEEEEEEEcCCccEEEEEEEcCCCCCCC
Q 008233 501 KGVPEINVCMDIDASSVLRVLVGVIMPGNPHP 532 (573)
Q Consensus 501 ~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~ 532 (573)
.|.++|+++|++|.+|+|+|++.+..++.+..
T Consensus 464 ~g~~~i~v~f~ld~~Gil~V~~~~~~~~~~~~ 495 (602)
T PF00012_consen 464 KGKPKIKVTFELDENGILSVEAAEVETGKEEE 495 (602)
T ss_dssp TTSSEEEEEEEEETTSEEEEEEEETTTTEEEE
T ss_pred ccccceeeEEeeeeeeehhhhhcccccccccc
Confidence 99999999999999999999999998876543
No 17
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-82 Score=681.99 Aligned_cols=466 Identities=35% Similarity=0.539 Sum_probs=438.0
Q ss_pred CCeEEEEEcCccceEEEEEeCC-cEEEEecCCCCccceEEEEEeCC-ceEEcCChHHHhhh-ccCccchhhHhhHhcCCC
Q 008233 25 PEIAIGIDIGTSQCSIAFWNGS-EVELIKNTRNQKVMRSYVTFKDE-VPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRV 101 (573)
Q Consensus 25 ~~~vvGIDfGTt~s~va~~~~~-~~~ii~~~~g~~~~PS~v~~~~~-~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~ 101 (573)
...+||||||||||+||+++++ .+.++.|..|.+.+||+|+|..+ ++++| ..|+.+ ..+|.++++.+||++|+.
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG---~~A~~q~~~~p~~t~~~~kr~~G~~ 80 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVG---QAAKRQAVDNPENTIFSIKRKIGRG 80 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEec---HHHHHHhhhCCcceEEEEehhcCCC
Confidence 4589999999999999999988 79999999999999999999755 59999 999999 999999999999999985
Q ss_pred CCChhhhhcCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHH
Q 008233 102 DTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLT 181 (573)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~ 181 (573)
-.. ....+. ++| +.++|+++.+++|++|++.|+.+++..+..+|||||+||++.||+
T Consensus 81 ~~~-------------------~~~~~~--~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~ 137 (579)
T COG0443 81 SNG-------------------LKISVE--VDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQ 137 (579)
T ss_pred CCC-------------------Ccceee--eCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHH
Confidence 110 001222 445 449999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-c
Q 008233 182 RIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-I 260 (573)
Q Consensus 182 ~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-l 260 (573)
++++|+++|||+++++++||+|||++|+.+... +.+|||||+||||||+|++++.++.++|+++.|+. +
T Consensus 138 at~~A~~iaGl~vlrlinEPtAAAlayg~~~~~----------~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~L 207 (579)
T COG0443 138 ATKDAARIAGLNVLRLINEPTAAALAYGLDKGK----------EKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHL 207 (579)
T ss_pred HHHHHHHHcCCCeEEEecchHHHHHHhHhccCC----------CcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCccc
Confidence 999999999999999999999999999998863 79999999999999999999999999999999999 9
Q ss_pred chHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE-ecCCeeEEEEEcHHHHHHHHHH
Q 008233 261 GGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD-LGNGLKVSKNVTREEFEEVNQK 339 (573)
Q Consensus 261 GG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~-l~~g~d~~~~itr~~fe~l~~~ 339 (573)
||++||.+|++|+..+|+.+++.++..+++.+++|+.+||++|+.||...++.+.++ +..+.++..+|||++||+++.+
T Consensus 208 GGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~d 287 (579)
T COG0443 208 GGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILD 287 (579)
T ss_pred CchhHHHHHHHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHH
Confidence 999999999999999999999899999999999999999999999999999999998 6666778999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCCCCC
Q 008233 340 VFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFG 419 (573)
Q Consensus 340 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~~~~ 419 (573)
++.++...++++|.+++++..+|+.|+||||++|||.|++.++++| ++.+...+||+++||.|||++|..+++.
T Consensus 288 ll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f-~~~~~~~inpdeava~GAa~qa~~l~~~----- 361 (579)
T COG0443 288 LLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFF-GKEPEKSINPDEAVALGAAIQAAVLSGE----- 361 (579)
T ss_pred HHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHh-CccccccCCccHHHHHHHHHHHHhhcCc-----
Confidence 9999999999999999999999999999999999999999999999 5888999999999999999999999884
Q ss_pred CCceEEeecccceeEEEecCCeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeCCCCC
Q 008233 420 NLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPS 499 (573)
Q Consensus 420 ~~~~~~~~~~~~~igi~~~~~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~~~~~ 499 (573)
..++++.|++|.++|+++.++.+..++++++.+|.++...|++..|+|..+.+.+++|+.....+|..+|.|.+.++|+.
T Consensus 362 ~~d~ll~Dv~plslgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~ 441 (579)
T COG0443 362 VPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPA 441 (579)
T ss_pred ccCceEEeeeeeccccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCC
Confidence 33889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEEcCCccEEEEEEEcCCCCCCC
Q 008233 500 PKGVPEINVCMDIDASSVLRVLVGVIMPGNPHP 532 (573)
Q Consensus 500 ~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~ 532 (573)
+.|.++|+++|.+|.||+++|++.+..+|++..
T Consensus 442 ~~g~~~i~v~f~iD~~gi~~v~a~~~~~~k~~~ 474 (579)
T COG0443 442 PRGVPQIEVTFDIDANGILNVTAKDLGTGKEQS 474 (579)
T ss_pred CCCCCceEEEeccCCCcceEeeeecccCCceEE
Confidence 999999999999999999999999999998866
No 18
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-71 Score=575.29 Aligned_cols=487 Identities=25% Similarity=0.370 Sum_probs=449.5
Q ss_pred eEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeCCceEEcCChHHHhhh-ccCccchhhHhhHhcCCCCCCh
Q 008233 27 IAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVDTDP 105 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~~~~ 105 (573)
.++|||||..+|.+|+.+.+.+++|.|+.++|.+|++|+|...++++| .+|+.+ .+++.+++..+||++|++|+||
T Consensus 2 svvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G---~aak~~~~~n~kntv~~~KRl~Gr~f~dP 78 (727)
T KOG0103|consen 2 SVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIG---VAAKNQQTTNVKNTVSNFKRLIGRKFSDP 78 (727)
T ss_pred CceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceee---eccccceeecccccchhhhhhhccccCCh
Confidence 389999999999999999999999999999999999999999999999 999999 9999999999999999999999
Q ss_pred hhhh-cCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHH
Q 008233 106 VVHA-SKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIE 184 (573)
Q Consensus 106 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~ 184 (573)
.+|. .+.+|+.++.. .||.+.+.+..-|+.+.+++++|++|+|.+|+..|++.+..++.+|||+||+||++.||+++.
T Consensus 79 ~~q~~~~~~~~~vv~~-~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravl 157 (727)
T KOG0103|consen 79 EVQREIKSLPRSVVQL-KDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVL 157 (727)
T ss_pred Hhhhcccccchheeec-CCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHH
Confidence 9999 89999999999 899998884344888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cchH
Q 008233 185 RACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGE 263 (573)
Q Consensus 185 ~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lGG~ 263 (573)
+||+.|||++++|++|-+|+|++|+..+...... +.++.+++++|+|..++.+|++.+..|.+.++++.++. +||+
T Consensus 158 dAA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~---~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr 234 (727)
T KOG0103|consen 158 DAARIAGLNPLRLMNDTTATALAYGIYKTDLPEN---EEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGR 234 (727)
T ss_pred hHHhhcCccceeeeecchHhHhhcccccccCCCc---ccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccc
Confidence 9999999999999999999999999987654211 23478999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE-ecCCeeEEEEEcHHHHHHHHHHHHH
Q 008233 264 DLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD-LGNGLKVSKNVTREEFEEVNQKVFE 342 (573)
Q Consensus 264 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~-l~~g~d~~~~itr~~fe~l~~~~~~ 342 (573)
+||++|.+|+.++|+.+++++...++++..||+.+||+.|+.||++...+++|+ +.++.|.+..|+|++||+++.|+++
T Consensus 235 ~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~ 314 (727)
T KOG0103|consen 235 DFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLE 314 (727)
T ss_pred hHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCCCCCCCc
Q 008233 343 KCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLD 422 (573)
Q Consensus 343 ~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~ 422 (573)
++..++.++|+++++..++|+.|.+|||+||+|.|++.|+++| ++.+..++|.++|||+|||++++++|.. ++.+.
T Consensus 315 rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP~---frVRe 390 (727)
T KOG0103|consen 315 RVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILSPT---FRVRE 390 (727)
T ss_pred hhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcCcc---cccee
Confidence 9999999999999999999999999999999999999999999 8999999999999999999999999987 77889
Q ss_pred eEEeecccceeEEEec----C-CeEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEecCCcccc-cCceeEEEEEeCC
Q 008233 423 LLTIQVTPLGIGIRAN----G-NNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVE-ENHLLGYFKITGI 496 (573)
Q Consensus 423 ~~~~~~~~~~igi~~~----~-~~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~eg~~~~~~-~~~~lg~~~i~~~ 496 (573)
+.+.|+.|++|.+++. + +....+||+|.++|..+..+|....+ +.+.++++.....+ ....|+++.+.++
T Consensus 391 f~v~Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~----F~lea~yt~~~~lp~~~~kI~~~~i~~v 466 (727)
T KOG0103|consen 391 FSVEDIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGP----FTLEAKYTKVNKLPYPKPKIEKWTITGV 466 (727)
T ss_pred cceecccceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecCc----eEEEEEeccccccCCCCCceeeEEeccc
Confidence 9999999999999874 2 45578999999999999989887765 88998887744444 4467999999988
Q ss_pred CCCCC-CCCEEEEEEEEcCCccEEEEEEEcCCC
Q 008233 497 PPSPK-GVPEINVCMDIDASSVLRVLVGVIMPG 528 (573)
Q Consensus 497 ~~~~~-g~~~i~v~~~id~~g~l~v~~~~~~~g 528 (573)
.+... +..++++..+++.+|++.+.-.-.-..
T Consensus 467 ~~~~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~ 499 (727)
T KOG0103|consen 467 TPSEDGEFSKVKVKVRLNEHGIDTIESATLIED 499 (727)
T ss_pred ccCccccccceeEEEEEcCccceeeecceeecc
Confidence 87665 344899999999999998875544433
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-65 Score=529.46 Aligned_cols=482 Identities=23% Similarity=0.330 Sum_probs=420.2
Q ss_pred CCCCeEEEEEcCccceEEEEEeCC-cEEEEecCCCCccceEEEEEeCCceEEcCChHHHhhh-ccCccchhhHhhHhcCC
Q 008233 23 PFPEIAIGIDIGTSQCSIAFWNGS-EVELIKNTRNQKVMRSYVTFKDEVPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGR 100 (573)
Q Consensus 23 ~~~~~vvGIDfGTt~s~va~~~~~-~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~ 100 (573)
+....+++||+|+.+++||+...| +.+|+.|...+|+.|++|+|.+++|++| ++|... .++|++++..++.+||+
T Consensus 19 ~~~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg---~~A~~ma~r~P~~~~~~l~~llgk 95 (902)
T KOG0104|consen 19 SSALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFG---EAAASMATRFPQSTYRQLKDLLGK 95 (902)
T ss_pred cchhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehh---hhhhhhhhcCcHHHHHHHHHHhCc
Confidence 345689999999999999999655 7789999999999999999999999999 999999 99999999999999999
Q ss_pred CCCChhhhh-cCCCC-eeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHH
Q 008233 101 VDTDPVVHA-SKSLP-FLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRF 178 (573)
Q Consensus 101 ~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~ 178 (573)
...++.++. .+.+| |.++.+ + .+..+.+.+++ ...|+++++++|+|.+.+..|+.+...++.++|||||.+|++.
T Consensus 96 ~~~~~~v~ly~~~~p~~e~v~d-~-~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qa 172 (902)
T KOG0104|consen 96 SLDDPTVDLYQKRFPFFELVED-P-QRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQA 172 (902)
T ss_pred ccCCcHHHHHHhcCCceeeccc-C-ccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHH
Confidence 999998777 66666 556655 2 45555554776 3459999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEe-------C---C
Q 008233 179 QLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATA-------G---G 248 (573)
Q Consensus 179 qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~-------~---~ 248 (573)
||+++.+||++||++++.||++-+|||+.|+..++... ...+++++|||+|+|+|.++++.+. + .
T Consensus 173 eR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i-----~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p 247 (902)
T KOG0104|consen 173 ERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEI-----NETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQP 247 (902)
T ss_pred HHHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccC-----CCCceEEEEEecCCCceeEEEEEEEeeccccccCccc
Confidence 99999999999999999999999999999999986553 3568999999999999999999984 1 4
Q ss_pred eEEEEEeeccc-cchHHHHHHHHHHHHHhhhhhcC--CCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE-ecCCeeE
Q 008233 249 VSQIKALSGSA-IGGEDLLQNMMRHLMPNSESLFS--SYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD-LGNGLKV 324 (573)
Q Consensus 249 ~~~v~~~~g~~-lGG~~iD~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~-l~~g~d~ 324 (573)
.+++++.+++. |||..|..+|.+|+.+.|.++++ .++..+++++.+|.++|+++|..||++..+.+.|+ +.++.||
T Consensus 248 ~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDF 327 (902)
T KOG0104|consen 248 QIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDF 327 (902)
T ss_pred eEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhcccc
Confidence 78999999999 99999999999999999998877 36778999999999999999999999999999999 9999999
Q ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhH
Q 008233 325 SKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGA 404 (573)
Q Consensus 325 ~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GA 404 (573)
...|||++||++|+++..++..+|+++|..++++.++|+.|+|.||++|+|.||+.|.+..+..++...+|.|||++.||
T Consensus 328 r~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGa 407 (902)
T KOG0104|consen 328 RLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGA 407 (902)
T ss_pred ccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHhHHhcCCCCCCCCCceEEeecccceeEEEecCC--------eEEEEEcCCCCCCceeEEEEEeecCCCccEEEEEEe
Q 008233 405 ALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGN--------NFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYE 476 (573)
Q Consensus 405 a~~a~~~~~~~~~~~~~~~~~~~~~~~~igi~~~~~--------~~~~li~~g~~iP~~~~~~~~~~~d~q~~~~i~i~e 476 (573)
+++|+.|+.. |+.+++.+.|.+.++|-++..+. .-..+|+++.++|.++..+|+...| .+.+.+-.
T Consensus 408 v~~aA~LSks---FKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysd---df~~~~n~ 481 (902)
T KOG0104|consen 408 VYQAAHLSKS---FKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSD---DFPFNINY 481 (902)
T ss_pred HHHHHhhccc---ccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCC---ccccccch
Confidence 9999999987 77999999999999998877543 2345899999999998777765544 24433333
Q ss_pred cCCcccccCceeEEEEEeCCCCCC----C---CCCEEEEEEEEcCCccEEEEEEEcC
Q 008233 477 GEGEKVEENHLLGYFKITGIPPSP----K---GVPEINVCMDIDASSVLRVLVGVIM 526 (573)
Q Consensus 477 g~~~~~~~~~~lg~~~i~~~~~~~----~---g~~~i~v~~~id~~g~l~v~~~~~~ 526 (573)
|... ..+..+.+.++...- . ...-|++.|.+|.+|++.|+..+..
T Consensus 482 ~~~~-----~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv 533 (902)
T KOG0104|consen 482 GDLG-----QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVV 533 (902)
T ss_pred hhhc-----cCccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEE
Confidence 2221 123466666654321 1 1234999999999999999876654
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=2.4e-57 Score=477.29 Aligned_cols=334 Identities=21% Similarity=0.297 Sum_probs=284.8
Q ss_pred EEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEe----------------------------------------
Q 008233 28 AIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFK---------------------------------------- 67 (573)
Q Consensus 28 vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~---------------------------------------- 67 (573)
++|||||||||++|++.+++++++++++|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6899999999999999999999999999999999999994
Q ss_pred -CCceEEcCChHHHhhh-ccCccch--hhHhhHhcCCCCCChhhhhcCCCCeeEEEeeCCCccEEEEEecCceeeeCHHH
Q 008233 68 -DEVPAGGVSTQLSHEH-EMLSGAA--IFNMKRLIGRVDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEE 143 (573)
Q Consensus 68 -~~~~~vG~~~~~A~~~-~~~p~~~--i~~~k~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 143 (573)
++..++| .+|+.. ..+|.++ +.++|++||...-.+ + ....+++
T Consensus 82 ~~~~~~~G---~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~----------------------------~--~~~~~e~ 128 (450)
T PRK11678 82 TAQSVFFG---LAALAQYLEDPEEVYFVKSPKSFLGASGLKP----------------------------Q--QVALFED 128 (450)
T ss_pred cccccchh---HHHHHhhccCCCCceEEecchhhhccCCCCc----------------------------c--ceeCHHH
Confidence 4466899 999999 8888887 779999999632110 1 1145899
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCC-----HHHHHH---HHHHHHHcCCCeeeeechhHHHHHHHHHhhccc
Q 008233 144 VLAIFLVELRAMAETQLKRPIRNVVLTIPVSFS-----RFQLTR---IERACAMAGLHVLRLMPEPTAVALLYAQQQQQS 215 (573)
Q Consensus 144 l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~ 215 (573)
+++++|++|++.|+.+++.++.++|||||++|+ +.||++ +++||+.|||++++|++||+|||++|+....
T Consensus 129 l~a~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~-- 206 (450)
T PRK11678 129 LVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT-- 206 (450)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC--
Confidence 999999999999999999999999999999998 778765 7999999999999999999999999986432
Q ss_pred ccccCCCCCccEEEEEecCCceeEEEEEEEeCC-------eEEEEEeeccccchHHHHHHHH-HHHHHhhhhh----cCC
Q 008233 216 VHENLGSGSEKIAVIFNMGAGYCDVTVSATAGG-------VSQIKALSGSAIGGEDLLQNMM-RHLMPNSESL----FSS 283 (573)
Q Consensus 216 ~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~-------~~~v~~~~g~~lGG~~iD~~l~-~~l~~~~~~~----~~~ 283 (573)
.++++||||+||||+|+|++++.++ ..+++++.|..+||+|||++|+ +++..+|+.. .+.
T Consensus 207 --------~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~ 278 (450)
T PRK11678 207 --------EEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSGQRIGGNDLDIALAFKQLMPLLGMGSETEKGI 278 (450)
T ss_pred --------CCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCCCCCChHHHHHHHHHHHHHHHhhhchhhccCC
Confidence 3789999999999999999999654 4689999995599999999998 6787777421 111
Q ss_pred CC-----------------------------------ccCHHHH------------HHHHHHHHHhhhhcCCCceEEEEE
Q 008233 284 YG-----------------------------------MNEIKSM------------ALLRVATQDAIHKLSSETSVQINV 316 (573)
Q Consensus 284 ~~-----------------------------------~~~~~~~------------~~L~~~~e~~K~~LS~~~~~~i~i 316 (573)
++ ..+++.+ .+|+.+||++|+.||.+.++++.+
T Consensus 279 ~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~ 358 (450)
T PRK11678 279 ALPSLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASL 358 (450)
T ss_pred cCcchhhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEe
Confidence 00 0123223 368899999999999999999998
Q ss_pred E-ecCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCC
Q 008233 317 D-LGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGIN 395 (573)
Q Consensus 317 ~-l~~g~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~ 395 (573)
+ +. .++..+|||++|+++++|+++++.++++++|+++++. ++.|+||||+|++|.|++.|++.||..++. ..+
T Consensus 359 ~~~~--~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~-~g~ 432 (450)
T PRK11678 359 DFIS--DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV-GGD 432 (450)
T ss_pred cccC--CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-eCC
Confidence 8 43 3578999999999999999999999999999999876 479999999999999999999999665554 669
Q ss_pred CccceehhHHHHhHH
Q 008233 396 PLEAAVSGAALEGAV 410 (573)
Q Consensus 396 p~~aVA~GAa~~a~~ 410 (573)
|.++||.|+|++|..
T Consensus 433 ~~~sVa~Gla~~a~~ 447 (450)
T PRK11678 433 DFGSVTAGLARWAQV 447 (450)
T ss_pred CcchHHHHHHHHHHh
Confidence 999999999999975
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=1.4e-39 Score=334.95 Aligned_cols=304 Identities=18% Similarity=0.266 Sum_probs=234.8
Q ss_pred EEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeCC--c-eEEcCChHHHhhh-ccCccchhhHhhHhcCCCCCC
Q 008233 29 IGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDE--V-PAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVDTD 104 (573)
Q Consensus 29 vGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~--~-~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~~~ 104 (573)
+||||||+|++++.. ++..++. .||+|++..+ . ..+| ++|+.. .+.|.+.... +
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG---~~A~~~~~~~p~~~~~~------~---- 63 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVG---EEARRMVGRTPGNIVAI------R---- 63 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEec---HHHHHhhhcCCCCEEEE------c----
Confidence 899999999999875 4444553 6999999743 2 3789 999876 5555544210 1
Q ss_pred hhhhhcCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHH
Q 008233 105 PVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIE 184 (573)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~ 184 (573)
|+ .+|. +...+....+|+++.+.+..........+|||||++|+..||++++
T Consensus 64 ---------pi----------------~~G~---i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~ 115 (336)
T PRK13928 64 ---------PL----------------RDGV---IADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVR 115 (336)
T ss_pred ---------cC----------------CCCe---EecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHH
Confidence 10 0011 3334566777788776554332223457999999999999999999
Q ss_pred HHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cchH
Q 008233 185 RACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGE 263 (573)
Q Consensus 185 ~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lGG~ 263 (573)
+|++.||++.+.+++||+|||++|+.+.. ++..++|||+||||||+++++... . . ..++. +||+
T Consensus 116 ~a~~~ag~~~~~li~ep~Aaa~~~g~~~~----------~~~~~lVvDiGggttdvsvv~~g~-~---~-~~~~~~lGG~ 180 (336)
T PRK13928 116 EAAEQAGAKKVYLIEEPLAAAIGAGLDIS----------QPSGNMVVDIGGGTTDIAVLSLGG-I---V-TSSSIKVAGD 180 (336)
T ss_pred HHHHHcCCCceEecccHHHHHHHcCCccc----------CCCeEEEEEeCCCeEEEEEEEeCC-E---E-EeCCcCCHHH
Confidence 99999999999999999999999887442 256799999999999999999753 1 2 23456 9999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCC----ceEEEEEE---ecCCeeEEEEEcHHHHHHH
Q 008233 264 DLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSE----TSVQINVD---LGNGLKVSKNVTREEFEEV 336 (573)
Q Consensus 264 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~----~~~~i~i~---l~~g~d~~~~itr~~fe~l 336 (573)
+||+.|++++.++++...+ ...||++|+.++.. ....+.+. +..+.+..++|+|++|+++
T Consensus 181 did~~i~~~l~~~~~~~~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~ei 247 (336)
T PRK13928 181 KFDEAIIRYIRKKYKLLIG-------------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREA 247 (336)
T ss_pred HHHHHHHHHHHHHhchhcC-------------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHH
Confidence 9999999999877643211 25799999988653 12333332 2445667899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcC--CCcCCCC-eEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHh
Q 008233 337 NQKVFEKCGSLITQCLHDAK--VEIEDLN-DVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVT 411 (573)
Q Consensus 337 ~~~~~~~~~~~i~~~l~~~~--~~~~~i~-~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~ 411 (573)
++++++++.+.|+++|+.++ +..+.++ .|+|+||+|++|.+++.|++.| +.++....||+++||+|||+++..+
T Consensus 248 i~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 248 LKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 99999999999999999986 4456677 7999999999999999999999 6777788899999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.7e-38 Score=325.97 Aligned_cols=303 Identities=20% Similarity=0.254 Sum_probs=238.3
Q ss_pred eEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeCC-c--eEEcCChHHHhhh-ccCccchhhHhhHhcCCCC
Q 008233 27 IAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDE-V--PAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVD 102 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~-~--~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~ 102 (573)
..+||||||+|+++ +.+++.. +.+ .||+|+++.+ + ..+| ++|+.. .+.|.++... + .+
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG---~~A~~~~~~~p~~~~~~--~----pi 66 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIG---TEAKNMIGKTPGKIVAV--R----PM 66 (335)
T ss_pred CeEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeC---HHHHHhhhcCCCcEEEE--e----cC
Confidence 35999999999985 4445443 334 5999999643 3 4799 999988 7777765331 1 10
Q ss_pred CChhhhhcCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCC--eEEEEeCCCCCHHHH
Q 008233 103 TDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIR--NVVLTIPVSFSRFQL 180 (573)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~--~~ViTVPa~f~~~qr 180 (573)
-+|. +.--++++.+|+++++.++..++..+. .+|||||++|+..||
T Consensus 67 -----------------------------~~G~---I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R 114 (335)
T PRK13929 67 -----------------------------KDGV---IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVER 114 (335)
T ss_pred -----------------------------CCCc---cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHH
Confidence 0111 222278899999999999888776543 799999999999999
Q ss_pred HHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-
Q 008233 181 TRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA- 259 (573)
Q Consensus 181 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~- 259 (573)
+++.+|++.||++.+.+++||+|||++|+.... .+..++|+|+||||+|+++++..+ . . ..++.
T Consensus 115 ~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~----------~~~~~lvvDiG~gtt~v~vi~~~~-~---~-~~~~~~ 179 (335)
T PRK13929 115 RAISDAVKNCGAKNVHLIEEPVAAAIGADLPVD----------EPVANVVVDIGGGTTEVAIISFGG-V---V-SCHSIR 179 (335)
T ss_pred HHHHHHHHHcCCCeeEeecCHHHHHHhcCCCcC----------CCceEEEEEeCCCeEEEEEEEeCC-E---E-EecCcC
Confidence 999999999999999999999999999865432 267899999999999999998654 1 2 33455
Q ss_pred cchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCC----ceEEEEEE---ecCCeeEEEEEcHHH
Q 008233 260 IGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSE----TSVQINVD---LGNGLKVSKNVTREE 332 (573)
Q Consensus 260 lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~----~~~~i~i~---l~~g~d~~~~itr~~ 332 (573)
+||++||+.|.+++.+.++. .. . ...||++|+.++.. ....+.+. +..+.+..+++++++
T Consensus 180 ~GG~~id~~l~~~l~~~~~~----~~--~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~ 246 (335)
T PRK13929 180 IGGDQLDEDIVSFVRKKYNL----LI--G-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKE 246 (335)
T ss_pred CHHHHHHHHHHHHHHHHhCc----Cc--C-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHH
Confidence 99999999999999875532 11 1 25799999999763 22233333 234556789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC--cCCCC-eEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHh
Q 008233 333 FEEVNQKVFEKCGSLITQCLHDAKVE--IEDLN-DVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEG 408 (573)
Q Consensus 333 fe~l~~~~~~~~~~~i~~~l~~~~~~--~~~i~-~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a 408 (573)
|++++.+++.++.+.|.++|+++... .+.++ .|+|+||+|++|.++++|++.| +.++....||+++||+||+..-
T Consensus 247 ~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 247 IQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 99999999999999999999997543 35677 6999999999999999999999 7777778899999999999874
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.7e-36 Score=312.30 Aligned_cols=304 Identities=17% Similarity=0.253 Sum_probs=224.8
Q ss_pred eEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeCC-c--eEEcCChHHHhhh-ccCccchhhHhhHhcCCCC
Q 008233 27 IAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDE-V--PAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVD 102 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~-~--~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~ 102 (573)
..|||||||++++++... +..++ .+||+|++... + ..+| ++|+.. .+.|.++...
T Consensus 6 ~~igIDlGt~~~~i~~~~--~~~~~-------~~ps~v~~~~~~~~~~~vG---~~a~~~~~~~~~~~~~~--------- 64 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKG--KGIVL-------NEPSVVAIRTDTKKVLAVG---EEAKQMLGRTPGNIVAI--------- 64 (334)
T ss_pred ceeEEEcCcceEEEEECC--CcEEE-------ecCCEEEEECCCCeEEEec---HHHHHHhhcCCCCEEEE---------
Confidence 469999999999985432 22233 38999999644 2 4899 999887 5555443110
Q ss_pred CChhhhhcCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHH
Q 008233 103 TDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTR 182 (573)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~ 182 (573)
.|+ -+|.. .+. +....+++++......... ....+|+|||++|+..||++
T Consensus 65 ----------~pi----------------~~G~i--~d~-~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~ 114 (334)
T PRK13927 65 ----------RPM----------------KDGVI--ADF-DVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRA 114 (334)
T ss_pred ----------ecC----------------CCCee--cCH-HHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHH
Confidence 010 01111 111 2234445555444332221 12489999999999999999
Q ss_pred HHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cc
Q 008233 183 IERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IG 261 (573)
Q Consensus 183 l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lG 261 (573)
++.|++.||++.+.+++||+|||++|+.... .+..++|||+||||||+++++..+-. ..+.. +|
T Consensus 115 ~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~----------~~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lG 179 (334)
T PRK13927 115 VRESALGAGAREVYLIEEPMAAAIGAGLPVT----------EPTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVG 179 (334)
T ss_pred HHHHHHHcCCCeeccCCChHHHHHHcCCccc----------CCCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCCh
Confidence 9999999999999999999999999876432 25678999999999999999876422 23445 99
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCce----EEEEEE---ecCCeeEEEEEcHHHHH
Q 008233 262 GEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETS----VQINVD---LGNGLKVSKNVTREEFE 334 (573)
Q Consensus 262 G~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~----~~i~i~---l~~g~d~~~~itr~~fe 334 (573)
|++||+.|.+++.+++... . + ...||++|+.++.... ..+.+. +..+.+..++|+|++|+
T Consensus 180 G~~id~~l~~~l~~~~~~~----~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 246 (334)
T PRK13927 180 GDKFDEAIINYVRRNYNLL----I--G-------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIR 246 (334)
T ss_pred HHHHHHHHHHHHHHHhCcC----c--C-------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHH
Confidence 9999999999998765322 1 1 2468999999875332 233332 33456678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC--cCCCC-eEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHH
Q 008233 335 EVNQKVFEKCGSLITQCLHDAKVE--IEDLN-DVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAV 410 (573)
Q Consensus 335 ~l~~~~~~~~~~~i~~~l~~~~~~--~~~i~-~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ 410 (573)
+++.+.++++.+.|.++|+++... ...++ .|+|+||+|++|.++++|++.| +.++....||+++||+||++++..
T Consensus 247 e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 247 EALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhh
Confidence 999999999999999999987643 22334 5999999999999999999999 677888889999999999999864
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1e-35 Score=305.98 Aligned_cols=303 Identities=18% Similarity=0.248 Sum_probs=222.0
Q ss_pred EEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeCC-----c--eEEcCChHHHhhh-ccCccchhhHhhHhcCC
Q 008233 29 IGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDE-----V--PAGGVSTQLSHEH-EMLSGAAIFNMKRLIGR 100 (573)
Q Consensus 29 vGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~-----~--~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~ 100 (573)
+||||||+||.++....+ .++ ..||+|+|.++ + ..+| ++|+.. .+.|.++- +++-+.
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG---~~A~~~~~~~~~~~~--~~~pi~- 69 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVG---HEAKEMLGKTPGNIV--AIRPMK- 69 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEh---HHHHHhhhcCCCCEE--EEecCC-
Confidence 999999999998875332 233 38999999633 3 5799 999876 45454431 111110
Q ss_pred CCCChhhhhcCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHH
Q 008233 101 VDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQL 180 (573)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr 180 (573)
+ |.. ... +....+++++........+.....+|+|||++|+..||
T Consensus 70 ----------------------~----------G~i--~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r 114 (333)
T TIGR00904 70 ----------------------D----------GVI--ADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVER 114 (333)
T ss_pred ----------------------C----------CEE--EcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHH
Confidence 1 111 111 22333444444433222121223899999999999999
Q ss_pred HHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-
Q 008233 181 TRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA- 259 (573)
Q Consensus 181 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~- 259 (573)
+++++|++.||++.+.+++||+|||++|+.... .+..++|+|+||||||+++++..+-. ..++.
T Consensus 115 ~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~----------~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~ 179 (333)
T TIGR00904 115 RAVKESALSAGAREVYLIEEPMAAAIGAGLPVE----------EPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIR 179 (333)
T ss_pred HHHHHHHHHcCCCeEEEecCHHHHHHhcCCccc----------CCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCcc
Confidence 999999999999999999999999998875432 25779999999999999999876421 23455
Q ss_pred cchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCce-----EEEEEE---ecCCeeEEEEEcHH
Q 008233 260 IGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETS-----VQINVD---LGNGLKVSKNVTRE 331 (573)
Q Consensus 260 lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~-----~~i~i~---l~~g~d~~~~itr~ 331 (573)
+||++||+.|++++.+++... . . +..||++|+.++.... ..+.+. ...+.+...+|+++
T Consensus 180 lGG~did~~l~~~l~~~~~~~----~--~-------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 246 (333)
T TIGR00904 180 VGGDEFDEAIINYIRRTYNLL----I--G-------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSV 246 (333)
T ss_pred chHHHHHHHHHHHHHHHhccc----C--C-------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHH
Confidence 999999999999998765311 1 1 3578999999865322 122222 11233456799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCc-CCC-C-eEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHh
Q 008233 332 EFEEVNQKVFEKCGSLITQCLHDAKVEI-EDL-N-DVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEG 408 (573)
Q Consensus 332 ~fe~l~~~~~~~~~~~i~~~l~~~~~~~-~~i-~-~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a 408 (573)
+|.+++.+.++++.+.+.++|+.+.... .++ + .|+|+||+|++|.++++|++.| +.++....||+++||.||++++
T Consensus 247 ~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~ 325 (333)
T TIGR00904 247 EVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKAL 325 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHH
Confidence 9999999999999999999999876432 233 3 6999999999999999999999 7788888999999999999997
Q ss_pred HH
Q 008233 409 AV 410 (573)
Q Consensus 409 ~~ 410 (573)
..
T Consensus 326 ~~ 327 (333)
T TIGR00904 326 ED 327 (333)
T ss_pred hC
Confidence 53
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.8e-35 Score=302.66 Aligned_cols=305 Identities=17% Similarity=0.210 Sum_probs=228.3
Q ss_pred eEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeC-C--ceEEcCChHHHhhh-ccCccchhhHhhHhcCCCC
Q 008233 27 IAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKD-E--VPAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVD 102 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~-~--~~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~ 102 (573)
..+||||||++++++++.++ .++ .+||+|++.+ . ...+| ++|+.. .+.|.+.- ++
T Consensus 9 ~~vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG---~~A~~~~~~~~~~~~--~~------- 67 (335)
T PRK13930 9 KDIGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVG---EEAKEMLGRTPGNIE--AI------- 67 (335)
T ss_pred cceEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEc---HHHHHhhhcCCCCeE--Ee-------
Confidence 34999999999999987333 233 2699999964 2 35899 999876 44443321 00
Q ss_pred CChhhhhcCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHH
Q 008233 103 TDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTR 182 (573)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~ 182 (573)
.|+. + |. +..-+....+++++.+.+..........+|+|+|++|+..+|++
T Consensus 68 ----------~pi~------~----------G~---i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~ 118 (335)
T PRK13930 68 ----------RPLK------D----------GV---IADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRA 118 (335)
T ss_pred ----------ecCC------C----------Ce---EcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHH
Confidence 1110 1 11 11124466777777766554434446789999999999999999
Q ss_pred HHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cc
Q 008233 183 IERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IG 261 (573)
Q Consensus 183 l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lG 261 (573)
+.+|++.+|++.+.+++||+|||++|+..... ....+|||+||||||++++....- .. .+.. +|
T Consensus 119 ~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~~----------~~~~lVvDiG~gttdvs~v~~g~~----~~-~~~~~lG 183 (335)
T PRK13930 119 VREAAEHAGAREVYLIEEPMAAAIGAGLPVTE----------PVGNMVVDIGGGTTEVAVISLGGI----VY-SESIRVA 183 (335)
T ss_pred HHHHHHHcCCCeEEecccHHHHHHhcCCCcCC----------CCceEEEEeCCCeEEEEEEEeCCE----Ee-ecCcCch
Confidence 99999999999999999999999988754321 456799999999999999986542 22 3445 99
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCce----EEEEEE---ecCCeeEEEEEcHHHHH
Q 008233 262 GEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETS----VQINVD---LGNGLKVSKNVTREEFE 334 (573)
Q Consensus 262 G~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~----~~i~i~---l~~g~d~~~~itr~~fe 334 (573)
|.+||+.|.+++.+++.. +.. ...||++|+.++.... ..+.+. +..+.+..++|++++|+
T Consensus 184 G~~id~~l~~~l~~~~~~----~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 250 (335)
T PRK13930 184 GDEMDEAIVQYVRRKYNL----LIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVR 250 (335)
T ss_pred hHHHHHHHHHHHHHHhCC----CCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHH
Confidence 999999999999876531 111 2578999999975432 223333 23445568899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC--cCCCCe-EEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHH
Q 008233 335 EVNQKVFEKCGSLITQCLHDAKVE--IEDLND-VILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAV 410 (573)
Q Consensus 335 ~l~~~~~~~~~~~i~~~l~~~~~~--~~~i~~-V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ 410 (573)
+++.+.++++.+.|.++|+++... .+.++. |+|+||+|++|.++++|++.| +.++....+|+++||+||++++..
T Consensus 251 e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 251 EALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhC
Confidence 999999999999999999986532 223454 999999999999999999999 677777889999999999999864
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.98 E-value=4.9e-31 Score=264.54 Aligned_cols=303 Identities=21% Similarity=0.262 Sum_probs=218.7
Q ss_pred eEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeCCc---eEEcCChHHHhhh-ccCccchhhHhhHhcCCCC
Q 008233 27 IAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDEV---PAGGVSTQLSHEH-EMLSGAAIFNMKRLIGRVD 102 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~---~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~~~ 102 (573)
.-+||||||+++.++. .++-.++ ..||+|+++... ..+| ++|+.. .+.|.+...
T Consensus 2 ~~igIDLGT~~t~i~~--~~~Giv~-------~epSvVA~~~~~~~i~avG---~~A~~m~gktp~~i~~---------- 59 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYV--KGKGIVL-------NEPSVVAYDKDTGKILAVG---DEAKAMLGKTPDNIEV---------- 59 (326)
T ss_dssp SEEEEEE-SSEEEEEE--TTTEEEE-------EEES-EEEETTT--EEEES---HHHHTTTTS-GTTEEE----------
T ss_pred CceEEecCcccEEEEE--CCCCEEE-------ecCcEEEEECCCCeEEEEh---HHHHHHhhcCCCccEE----------
Confidence 3689999999999854 2332333 259999996542 3689 999876 555543200
Q ss_pred CChhhhhcCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHH
Q 008233 103 TDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTR 182 (573)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~ 182 (573)
..|. -+|. +.=-++...+|+++.+.+.......-.+++++||+.-++-+|++
T Consensus 60 ---------~~Pl----------------~~Gv---I~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA 111 (326)
T PF06723_consen 60 ---------VRPL----------------KDGV---IADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRA 111 (326)
T ss_dssp ---------E-SE----------------ETTE---ESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHH
T ss_pred ---------Eccc----------------cCCc---ccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHH
Confidence 0111 1232 22235677788888887765423345789999999999999999
Q ss_pred HHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccccch
Q 008233 183 IERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSAIGG 262 (573)
Q Consensus 183 l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~lGG 262 (573)
+.+|+..||...+.|++||.|||+..+..-.. +...||+|+||||||++++...+ +..+.....||
T Consensus 112 ~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~~----------~~g~miVDIG~GtTdiavislgg----iv~s~si~~gG 177 (326)
T PF06723_consen 112 LIDAARQAGARKVYLIEEPIAAAIGAGLDIFE----------PRGSMIVDIGGGTTDIAVISLGG----IVASRSIRIGG 177 (326)
T ss_dssp HHHHHHHTT-SEEEEEEHHHHHHHHTT--TTS----------SS-EEEEEE-SS-EEEEEEETTE----EEEEEEES-SH
T ss_pred HHHHHHHcCCCEEEEecchHHHHhcCCCCCCC----------CCceEEEEECCCeEEEEEEECCC----EEEEEEEEecC
Confidence 99999999999999999999999988776533 67899999999999999997553 34455556999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCc----eEEEEEE---ecCCeeEEEEEcHHHHHH
Q 008233 263 EDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSET----SVQINVD---LGNGLKVSKNVTREEFEE 335 (573)
Q Consensus 263 ~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~----~~~i~i~---l~~g~d~~~~itr~~fe~ 335 (573)
++||++|.+|+.+++.-..+ ...||++|+.++... ...+.+. +.+|.+..++|+.+++.+
T Consensus 178 ~~~DeaI~~~ir~~y~l~Ig-------------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ 244 (326)
T PF06723_consen 178 DDIDEAIIRYIREKYNLLIG-------------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVRE 244 (326)
T ss_dssp HHHHHHHHHHHHHHHSEE---------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHH
T ss_pred cchhHHHHHHHHHhhCcccC-------------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHH
Confidence 99999999999999854332 367899999986432 2345554 578888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcC---CC--CeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhH
Q 008233 336 VNQKVFEKCGSLITQCLHDAKVEIE---DL--NDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGA 409 (573)
Q Consensus 336 l~~~~~~~~~~~i~~~l~~~~~~~~---~i--~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~ 409 (573)
.+++.+.++.+.|+++|++. +++ || +.|+|+||+|+++.+.++|++.+ +.++....||..+||+||.....
T Consensus 245 ai~~~~~~I~~~i~~~Le~~--pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 245 AIEPPVDQIVEAIKEVLEKT--PPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHTS---HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHHh
Confidence 99999999999999999974 222 22 36999999999999999999999 88999999999999999998653
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=9.1e-29 Score=240.81 Aligned_cols=201 Identities=18% Similarity=0.241 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccC
Q 008233 141 PEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENL 220 (573)
Q Consensus 141 ~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~ 220 (573)
--+..+.+|+++++.++.+++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|||++|..
T Consensus 38 d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~---------- 107 (239)
T TIGR02529 38 DFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQI---------- 107 (239)
T ss_pred EhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcC----------
Confidence 3467889999999999999998899999999999999999999999999999999999999999998742
Q ss_pred CCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccccchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHH
Q 008233 221 GSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSAIGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQ 300 (573)
Q Consensus 221 ~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e 300 (573)
...+|+|+||||+|+++++. +. +..+....+||++||+.|++.+. .+ ..+||
T Consensus 108 -----~~~~vvDiGggtt~i~i~~~--G~--i~~~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE 159 (239)
T TIGR02529 108 -----KNGAVVDVGGGTTGISILKK--GK--VIYSADEPTGGTHMSLVLAGAYG--------IS-----------FEEAE 159 (239)
T ss_pred -----CCcEEEEeCCCcEEEEEEEC--Ce--EEEEEeeecchHHHHHHHHHHhC--------CC-----------HHHHH
Confidence 12599999999999999764 32 33344334999999998876542 11 26789
Q ss_pred HhhhhcCCCceEEEEEEecCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHH
Q 008233 301 DAIHKLSSETSVQINVDLGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNL 380 (573)
Q Consensus 301 ~~K~~LS~~~~~~i~i~l~~g~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~ 380 (573)
++|+.++ +.+++.++++++++++.+.+++.|++. .++.|+|+||+|++|.+++.
T Consensus 160 ~~K~~~~---------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~ 213 (239)
T TIGR02529 160 EYKRGHK---------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADV 213 (239)
T ss_pred HHHHhcC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHH
Confidence 9998654 146678899999999999999999864 45689999999999999999
Q ss_pred HHhHcCCccccCCCCCccceehhHHH
Q 008233 381 VQSTCKKVELYEGINPLEAAVSGAAL 406 (573)
Q Consensus 381 l~~~f~~~~i~~~~~p~~aVA~GAa~ 406 (573)
|++.| +.++..+.||++++|.|||+
T Consensus 214 l~~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 214 FEKQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHh-CCCcccCCCCCeehhheeec
Confidence 99999 77888899999999999986
No 28
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.95 E-value=1.7e-26 Score=228.91 Aligned_cols=201 Identities=20% Similarity=0.264 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCC
Q 008233 142 EEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLG 221 (573)
Q Consensus 142 ~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~ 221 (573)
-+.....|+++++.++.+++.++..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|..
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~----------- 134 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGI----------- 134 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCC-----------
Confidence 456667899999999999888899999999999999999999999999999999999999999987632
Q ss_pred CCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHH
Q 008233 222 SGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQ 300 (573)
Q Consensus 222 ~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e 300 (573)
...+++|+||||||+++++ ++.+ ..+ ++. +||++||+.|++++. .+ +.+||
T Consensus 135 ----~~~~vvDIGggtt~i~v~~--~g~~--~~~-~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE 186 (267)
T PRK15080 135 ----DNGAVVDIGGGTTGISILK--DGKV--VYS-ADEPTGGTHMSLVLAGAYG--------IS-----------FEEAE 186 (267)
T ss_pred ----CCcEEEEeCCCcEEEEEEE--CCeE--EEE-ecccCchHHHHHHHHHHhC--------CC-----------HHHHH
Confidence 1158999999999999975 3332 333 355 999999999997752 11 36788
Q ss_pred HhhhhcCCCceEEEEEEecCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHH
Q 008233 301 DAIHKLSSETSVQINVDLGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNL 380 (573)
Q Consensus 301 ~~K~~LS~~~~~~i~i~l~~g~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~ 380 (573)
++|+.++ ++++++++++++++++.+.+++.++.. .++.|+|+||+|++|.+++.
T Consensus 187 ~lK~~~~---------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~ 240 (267)
T PRK15080 187 QYKRDPK---------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEV 240 (267)
T ss_pred HHHhccC---------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHH
Confidence 8887653 357899999999999999999999864 57899999999999999999
Q ss_pred HHhHcCCccccCCCCCccceehhHHHHh
Q 008233 381 VQSTCKKVELYEGINPLEAAVSGAALEG 408 (573)
Q Consensus 381 l~~~f~~~~i~~~~~p~~aVA~GAa~~a 408 (573)
+++.| +.++....+|+.++|.|||+||
T Consensus 241 l~~~l-g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 241 FEKQT-GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHHh-CCCcccCCCchHHHHHHHHhhC
Confidence 99999 7788888999999999999875
No 29
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.95 E-value=1.3e-26 Score=223.19 Aligned_cols=308 Identities=18% Similarity=0.264 Sum_probs=232.0
Q ss_pred eEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeC--Cc---eEEcCChHHHhhh-ccCccchhhHhhHhcCC
Q 008233 27 IAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKD--EV---PAGGVSTQLSHEH-EMLSGAAIFNMKRLIGR 100 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~--~~---~~vG~~~~~A~~~-~~~p~~~i~~~k~~lg~ 100 (573)
..+|||+||.|+.|... ++.-++ + -||+|++.. +. ..+| .+|+.. -+.|.+...
T Consensus 7 ~diGIDLGTanTlV~~k--~kgIVl-~------ePSVVAi~~~~~~~~v~aVG---~eAK~MlGrTP~ni~a-------- 66 (342)
T COG1077 7 NDIGIDLGTANTLVYVK--GKGIVL-N------EPSVVAIESEGKTKVVLAVG---EEAKQMLGRTPGNIVA-------- 66 (342)
T ss_pred ccceeeecccceEEEEc--CceEEe-c------CceEEEEeecCCCceEEEeh---HHHHHHhccCCCCceE--------
Confidence 47999999999998764 333333 3 699999955 22 2689 888765 444443211
Q ss_pred CCCChhhhhcCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcC-CCCCeEEEEeCCCCCHHH
Q 008233 101 VDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLK-RPIRNVVLTIPVSFSRFQ 179 (573)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~-~~~~~~ViTVPa~f~~~q 179 (573)
+..--+|. +.--++...+|+|+.+....... ....++++.||..-++-.
T Consensus 67 ---------------------------iRPmkdGV---IAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VE 116 (342)
T COG1077 67 ---------------------------IRPMKDGV---IADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVE 116 (342)
T ss_pred ---------------------------EeecCCcE---eecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHH
Confidence 11001122 33345666778888777653322 334579999999999999
Q ss_pred HHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc
Q 008233 180 LTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA 259 (573)
Q Consensus 180 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~ 259 (573)
|+++++|++.||...+.++.||.|||+..+..-.. +.--||||+||||||++++.+.+ +..+....
T Consensus 117 rrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~e----------p~G~mvvDIGgGTTevaVISlgg----iv~~~Sir 182 (342)
T COG1077 117 RRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIME----------PTGSMVVDIGGGTTEVAVISLGG----IVSSSSVR 182 (342)
T ss_pred HHHHHHHHHhccCceEEEeccHHHHHhcCCCcccC----------CCCCEEEEeCCCceeEEEEEecC----EEEEeeEE
Confidence 99999999999999999999999999966554432 55679999999999999999875 33444445
Q ss_pred cchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCC------ceEEEEEE---ecCCeeEEEEEcH
Q 008233 260 IGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSE------TSVQINVD---LGNGLKVSKNVTR 330 (573)
Q Consensus 260 lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~------~~~~i~i~---l~~g~d~~~~itr 330 (573)
+||+.||+++.+|+.++|+-..+ -+.+|++|.+.-.. ....+.+. +..|.+-.++++.
T Consensus 183 v~GD~~De~Ii~yvr~~~nl~IG-------------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s 249 (342)
T COG1077 183 VGGDKMDEAIIVYVRKKYNLLIG-------------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINS 249 (342)
T ss_pred EecchhhHHHHHHHHHHhCeeec-------------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcH
Confidence 99999999999999998864443 13478888776321 12233333 5667778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC--CCcCCCCe-EEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHH
Q 008233 331 EEFEEVNQKVFEKCGSLITQCLHDAK--VEIEDLND-VILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALE 407 (573)
Q Consensus 331 ~~fe~l~~~~~~~~~~~i~~~l~~~~--~~~~~i~~-V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~ 407 (573)
++..+.+++.+++|.+.++..|++.. +..+-++. ++|+||.|.+..+.+.|++.. +..+....+|-.+||+|+.+.
T Consensus 250 ~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~ 328 (342)
T COG1077 250 EEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKA 328 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchh
Confidence 99999999999999999999999842 33334455 999999999999999999999 788888999999999999987
Q ss_pred hHHhc
Q 008233 408 GAVTS 412 (573)
Q Consensus 408 a~~~~ 412 (573)
...+.
T Consensus 329 le~~~ 333 (342)
T COG1077 329 LEALD 333 (342)
T ss_pred hhhhH
Confidence 76553
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.89 E-value=7.6e-22 Score=206.06 Aligned_cols=193 Identities=18% Similarity=0.264 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeec
Q 008233 178 FQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG 257 (573)
Q Consensus 178 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g 257 (573)
...+.+.+|++.||+++..++.||.|+|++|..... ....++|+|+||||||+++++- +.+ .....
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~----------~~~~~~vvDiG~gtt~i~i~~~--g~~--~~~~~ 223 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE----------KELGVCLIDIGGGTTDIAVYTG--GSI--RYTKV 223 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch----------hcCCEEEEEeCCCcEEEEEEEC--CEE--EEEee
Confidence 566888899999999999999999999998853321 2567999999999999999863 332 22233
Q ss_pred cccchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCC------ceEEEEEE-ecCCeeEEEEEcH
Q 008233 258 SAIGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSE------TSVQINVD-LGNGLKVSKNVTR 330 (573)
Q Consensus 258 ~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~------~~~~i~i~-l~~g~d~~~~itr 330 (573)
..+||++||+.|++.+. ....+||++|+.++.. ....+.++ .. .+....++|
T Consensus 224 i~~GG~~it~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~ 282 (371)
T TIGR01174 224 IPIGGNHITKDIAKALR-------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSR 282 (371)
T ss_pred ecchHHHHHHHHHHHhC-------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcH
Confidence 34999999998876431 1146799999998753 23456665 32 356789999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHcCCCcCCCCe-EEEEcCCcCcHHHHHHHHhHcCCccc--cC----------CCCC
Q 008233 331 EEFEEVNQKVFEKCGSLIT-QCLHDAKVEIEDLND-VILVGGCSYIPKVRNLVQSTCKKVEL--YE----------GINP 396 (573)
Q Consensus 331 ~~fe~l~~~~~~~~~~~i~-~~l~~~~~~~~~i~~-V~LvGG~s~~p~v~~~l~~~f~~~~i--~~----------~~~p 396 (573)
++|++++++.++++.+.++ +.|++++.. .+++. |+|+||+|++|.+++.+++.|+ .++ .. ..+|
T Consensus 283 ~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~-~~vr~~~P~~~~~~~~~~~~p 360 (371)
T TIGR01174 283 KELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFD-NPVRIGLPQNIGGLTEDVNDP 360 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhC-CCeEEECCCccCCchhhcCCc
Confidence 9999999999999999997 999998876 56777 9999999999999999999994 322 11 1267
Q ss_pred ccceehhHHHH
Q 008233 397 LEAAVSGAALE 407 (573)
Q Consensus 397 ~~aVA~GAa~~ 407 (573)
..++|.|.++|
T Consensus 361 ~~~~a~Gl~~~ 371 (371)
T TIGR01174 361 EYSTAVGLLLY 371 (371)
T ss_pred HHHHHHHHHhC
Confidence 77888887764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.88 E-value=7.1e-21 Score=201.11 Aligned_cols=197 Identities=16% Similarity=0.205 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEee
Q 008233 177 RFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALS 256 (573)
Q Consensus 177 ~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~ 256 (573)
..+++. .+|++.|||++..++.||.|+|.++..... ++..++++|+||||||+++++ +|. +..+.
T Consensus 166 ~~~~~~-~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e----------~~~gv~vvDiGggtTdisv~~--~G~--l~~~~ 230 (420)
T PRK09472 166 DMAKNI-VKAVERCGLKVDQLIFAGLASSYAVLTEDE----------RELGVCVVDIGGGTMDIAVYT--GGA--LRHTK 230 (420)
T ss_pred HHHHHH-HHHHHHcCCeEeeEEehhhHHHHHhcChhh----------hhcCeEEEEeCCCceEEEEEE--CCE--EEEEe
Confidence 344444 569999999999999999999998854422 257799999999999999997 332 23334
Q ss_pred ccccchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcC----CC--ceEEEEEEecCCeeEEEEEcH
Q 008233 257 GSAIGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLS----SE--TSVQINVDLGNGLKVSKNVTR 330 (573)
Q Consensus 257 g~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS----~~--~~~~i~i~l~~g~d~~~~itr 330 (573)
..++||++|++.|++.+. . -...||++|+.+. .. ....+.++..++. ....++|
T Consensus 231 ~i~~GG~~it~dIa~~l~--------i-----------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~-~~~~i~~ 290 (420)
T PRK09472 231 VIPYAGNVVTSDIAYAFG--------T-----------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR-PPRSLQR 290 (420)
T ss_pred eeechHHHHHHHHHHHhC--------c-----------CHHHHHHHHHhcceeccccCCCCceeEecCCCCC-CCeEEcH
Confidence 444999999999886542 1 1367999996643 21 2345666522222 2358999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccC-----------
Q 008233 331 EEFEEVNQKVFEKCGSLITQ-------CLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYE----------- 392 (573)
Q Consensus 331 ~~fe~l~~~~~~~~~~~i~~-------~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~----------- 392 (573)
.+|.+++++-++++.+.+.+ .|.++++....++.|+|+||+|++|.|++.+++.|+ .++..
T Consensus 291 ~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~ 369 (420)
T PRK09472 291 QTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTD 369 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC-CCeEEeCCcccCCChh
Confidence 99999999977776666654 556677777788999999999999999999999994 33211
Q ss_pred -CCCCccceehhHHHHhH
Q 008233 393 -GINPLEAAVSGAALEGA 409 (573)
Q Consensus 393 -~~~p~~aVA~GAa~~a~ 409 (573)
..+|..++|.|.++|+.
T Consensus 370 ~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 370 YAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred hcCCcHHHHHHHHHHHhh
Confidence 24799999999999986
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.77 E-value=1.3e-16 Score=164.37 Aligned_cols=206 Identities=23% Similarity=0.338 Sum_probs=161.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEe
Q 008233 167 VVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATA 246 (573)
Q Consensus 167 ~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~ 246 (573)
.++|+|. .--+.+.+|.+.+|+++..++.+|-|+|.+...+.. ++-.++++|+||||||+++++-.
T Consensus 158 hvit~~~----~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dE----------kelGv~lIDiG~GTTdIai~~~G 223 (418)
T COG0849 158 HVITGPK----NILENLEKCVERAGLKVDNIVLEPLASALAVLTEDE----------KELGVALIDIGGGTTDIAIYKNG 223 (418)
T ss_pred EEEEcch----HHHHHHHHHHHHhCCCeeeEEEehhhhhhhccCccc----------HhcCeEEEEeCCCcEEEEEEECC
Confidence 4677765 445678889999999999999999999986554432 36789999999999999998854
Q ss_pred CCeEEEEEeeccccchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCC------CceEEEEEE-ec
Q 008233 247 GGVSQIKALSGSAIGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSS------ETSVQINVD-LG 319 (573)
Q Consensus 247 ~~~~~v~~~~g~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~------~~~~~i~i~-l~ 319 (573)
.+..+..-++||++++..|+.-|.-- ...||+.|..... .....+.++ ..
T Consensus 224 ----~l~~~~~ipvgG~~vT~DIa~~l~t~-------------------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg 280 (418)
T COG0849 224 ----ALRYTGVIPVGGDHVTKDIAKGLKTP-------------------FEEAERIKIKYGSALISLADDEETIEVPSVG 280 (418)
T ss_pred ----EEEEEeeEeeCccHHHHHHHHHhCCC-------------------HHHHHHHHHHcCccccCcCCCcceEecccCC
Confidence 34444445599999999998766432 2567888877632 234556666 43
Q ss_pred CCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCC-ccccC------
Q 008233 320 NGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKK-VELYE------ 392 (573)
Q Consensus 320 ~g~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~-~~i~~------ 392 (573)
+ +...++||.++.+++++-+.++..+++..|++.++...-...|+|+||++.+|.+.+..++.|+. .++..
T Consensus 281 ~--~~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~G 358 (418)
T COG0849 281 S--DIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVG 358 (418)
T ss_pred C--cccchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccC
Confidence 3 33789999999999999999999999999999998766678899999999999999999999942 11211
Q ss_pred ----CCCCccceehhHHHHhHHh
Q 008233 393 ----GINPLEAAVSGAALEGAVT 411 (573)
Q Consensus 393 ----~~~p~~aVA~GAa~~a~~~ 411 (573)
..+|..+.|.|..+|+...
T Consensus 359 l~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 359 LTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred chhhccCchhhhhHHHHHHHhhc
Confidence 2468899999999998753
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.71 E-value=6e-16 Score=161.98 Aligned_cols=237 Identities=14% Similarity=0.152 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHH-HHHcCCCeeeeechhHHHHHHHHHhhcccccccCC
Q 008233 143 EVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERA-CAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLG 221 (573)
Q Consensus 143 ~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~ 221 (573)
+....+++++...... ....-..+++++|..++..+|+.+.+. .+..|++.+.++++|.+|+++++
T Consensus 75 ~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g------------ 141 (371)
T cd00012 75 DDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASG------------ 141 (371)
T ss_pred HHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcC------------
Confidence 3444556665543211 112246799999999998888888775 66789999999999999998764
Q ss_pred CCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccccchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHH
Q 008233 222 SGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSAIGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQD 301 (573)
Q Consensus 222 ~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 301 (573)
..+-+|+|+|+++++++.+.- |..-..+....++||+++|+.|.+++..+... .+.. .-...++.
T Consensus 142 ---~~~~lVVDiG~~~t~i~pv~~--G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~---~~~~-------~~~~~~~~ 206 (371)
T cd00012 142 ---RTTGLVVDSGDGVTHVVPVYD--GYVLPHAIKRLDLAGRDLTRYLKELLRERGYE---LNSS-------DEREIVRD 206 (371)
T ss_pred ---CCeEEEEECCCCeeEEEEEEC--CEEchhhheeccccHHHHHHHHHHHHHhcCCC---ccch-------hHHHHHHH
Confidence 367899999999999887663 32211122233399999999999988654320 0111 11234555
Q ss_pred hhhhcCCC---c------------eEEEEEEecCCeeEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC
Q 008233 302 AIHKLSSE---T------------SVQINVDLGNGLKVSKNVTREEFEEVNQKVFE---------KCGSLITQCLHDAKV 357 (573)
Q Consensus 302 ~K~~LS~~---~------------~~~i~i~l~~g~d~~~~itr~~fe~l~~~~~~---------~~~~~i~~~l~~~~~ 357 (573)
.|+.+..- . .......+.++. .+.++.+.| .+.+.+++ .+.+.|.++++.+..
T Consensus 207 iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~--~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~ 283 (371)
T cd00012 207 IKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGR--TIKVGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINKCDI 283 (371)
T ss_pred HHHhheeecCCHHHHHHhhhccCCccceeEECCCCe--EEEEChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHhCCH
Confidence 55554221 0 001112234553 455665544 23333333 677888888877532
Q ss_pred C--cCCCCeEEEEcCCcCcHHHHHHHHhHcC----C-----ccccCCCCCccceehhHHHHhHH
Q 008233 358 E--IEDLNDVILVGGCSYIPKVRNLVQSTCK----K-----VELYEGINPLEAAVSGAALEGAV 410 (573)
Q Consensus 358 ~--~~~i~~V~LvGG~s~~p~v~~~l~~~f~----~-----~~i~~~~~p~~aVA~GAa~~a~~ 410 (573)
+ ..-++.|+|+||+|++|.+.++|++.+. . ..+....+|..++-+||+++|..
T Consensus 284 ~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 284 DLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred hHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 2 2245789999999999999999988773 1 12345678999999999999864
No 34
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.68 E-value=1.7e-15 Score=158.62 Aligned_cols=299 Identities=16% Similarity=0.194 Sum_probs=184.2
Q ss_pred eEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeCC---------ceEEcCChHHHhhhccCccchhhHhhHh
Q 008233 27 IAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDE---------VPAGGVSTQLSHEHEMLSGAAIFNMKRL 97 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~---------~~~vG~~~~~A~~~~~~p~~~i~~~k~~ 97 (573)
..|.||+||.++++++..+..+.++ +||+++...+ ...+| ++|....
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G---~~a~~~~------------- 57 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVG---DEAQEKR------------- 57 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEec---chhhhcC-------------
Confidence 4799999999999999865544433 7888877422 23677 6663210
Q ss_pred cCCCCCChhhhhcCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCC--CCCeEEEEeCCCC
Q 008233 98 IGRVDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKR--PIRNVVLTIPVSF 175 (573)
Q Consensus 98 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~--~~~~~ViTVPa~f 175 (573)
+.. .-.+|++ + |. +.--+....+++++... .++. .-..+++|+|...
T Consensus 58 -~~~--------~~~~P~~------~----------G~---i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~ 106 (373)
T smart00268 58 -GGL--------ELKYPIE------H----------GI---VENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMN 106 (373)
T ss_pred -CCc--------eecCCCc------C----------CE---EeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCC
Confidence 000 0012211 1 11 22234555666666553 2222 2357999999999
Q ss_pred CHHHHHHHHHHH-HHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEE
Q 008233 176 SRFQLTRIERAC-AMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKA 254 (573)
Q Consensus 176 ~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~ 254 (573)
+..+|+.+.+.+ +..|++.+.++++|.||+++++ ..+-||+|+|+++++++.+. +|..-..+
T Consensus 107 ~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g---------------~~~~lVVDiG~~~t~v~pv~--~G~~~~~~ 169 (373)
T smart00268 107 PKSNREKILEIMFETFNFPALYIAIQAVLSLYASG---------------RTTGLVIDSGDGVTHVVPVV--DGYVLPHA 169 (373)
T ss_pred CHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC---------------CCEEEEEecCCCcceEEEEE--CCEEchhh
Confidence 999999998887 5679999999999999998764 46799999999999999887 33221112
Q ss_pred eeccccchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCC-----------------ceEEEEEE
Q 008233 255 LSGSAIGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSE-----------------TSVQINVD 317 (573)
Q Consensus 255 ~~g~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~-----------------~~~~i~i~ 317 (573)
....++||+++|+.|.+++...-. ++ ... .-...++.+|+.+... ........
T Consensus 170 ~~~~~~GG~~l~~~l~~~l~~~~~-~~--~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (373)
T smart00268 170 IKRIDIAGRDLTDYLKELLSERGY-QF--NSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYE 239 (373)
T ss_pred heeccCcHHHHHHHHHHHHHhcCC-CC--CcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEE
Confidence 223349999999999998866210 11 111 1123344455443210 01111222
Q ss_pred ecCCeeEEEEEcHHHHHHHHHHHH---------HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCcHHHHHHHHhHc-
Q 008233 318 LGNGLKVSKNVTREEFEEVNQKVF---------EKCGSLITQCLHDAKVE--IEDLNDVILVGGCSYIPKVRNLVQSTC- 385 (573)
Q Consensus 318 l~~g~d~~~~itr~~fe~l~~~~~---------~~~~~~i~~~l~~~~~~--~~~i~~V~LvGG~s~~p~v~~~l~~~f- 385 (573)
+.+|..+. +..+.| .+.+.++ ..+.++|.++|.++..+ ..=.+.|+|+||+|++|.+.++|.+.+
T Consensus 240 lpdg~~~~--~~~er~-~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~ 316 (373)
T smart00268 240 LPDGNTIK--VGNERF-RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELK 316 (373)
T ss_pred CCCCCEEE--EChHHe-eCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHH
Confidence 44665443 333333 2223333 35777888888765322 112356999999999999999988776
Q ss_pred ---CC---ccccCCCCCccceehhHHHHhHH
Q 008233 386 ---KK---VELYEGINPLEAAVSGAALEGAV 410 (573)
Q Consensus 386 ---~~---~~i~~~~~p~~aVA~GAa~~a~~ 410 (573)
|. .++....++..++=.||+++|..
T Consensus 317 ~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 317 QLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred HhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 21 23444566778888999988853
No 35
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.62 E-value=7.3e-14 Score=143.58 Aligned_cols=212 Identities=15% Similarity=0.160 Sum_probs=139.0
Q ss_pred EEEEeCCCCCHHHH-HHHHHHHHHc------C------CCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEec
Q 008233 167 VVLTIPVSFSRFQL-TRIERACAMA------G------LHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNM 233 (573)
Q Consensus 167 ~ViTVPa~f~~~qr-~~l~~Aa~~A------G------l~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~ 233 (573)
++...|..+...++ +.+++..... | +..+.++.||.+|.+.+..+........ ..+...++|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~--~~~~~~ilvIDI 192 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADK--AFEEGKVSVIDF 192 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccch--hcccCcEEEEEc
Confidence 44589988754453 6676654321 1 2337789999999887776543210000 013567999999
Q ss_pred CCceeEEEEEEEeCCeEEEEEeeccccchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEE
Q 008233 234 GAGYCDVTVSATAGGVSQIKALSGSAIGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQ 313 (573)
Q Consensus 234 GggT~Dvsv~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~ 313 (573)
|+||+|+++++ +..+....+.+...|..++.+.+.+.+..+.. +..+ +.. ++.+..+.-+
T Consensus 193 G~~TtD~~v~~--~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~~---~~~~--~~~---~ie~~l~~g~---------- 252 (344)
T PRK13917 193 GSGTTDLDTIQ--NLKRVEEESFVIPKGTIDVYKRIASHISKKEE---GASI--TPY---MLEKGLEYGA---------- 252 (344)
T ss_pred CCCcEEEEEEe--CcEEcccccccccchHHHHHHHHHHHHHhhCC---CCCC--CHH---HHHHHHHcCc----------
Confidence 99999999986 34343333333449999999999988854322 2222 221 2222221111
Q ss_pred EEEEecCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCC
Q 008233 314 INVDLGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEG 393 (573)
Q Consensus 314 i~i~l~~g~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~ 393 (573)
+.+ ..+.+ +.+ ++++.++++++++++.+.|...+.+ ..+++.|+|+||++++ +++.|++.|+.. ...
T Consensus 253 i~~--~~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~~--~~~ 319 (344)
T PRK13917 253 CKL--NQKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSDV--EKA 319 (344)
T ss_pred EEe--CCCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCCe--EEc
Confidence 111 11111 223 4667789999999998888888854 3478999999999985 899999999654 456
Q ss_pred CCCccceehhHHHHhHHhcC
Q 008233 394 INPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 394 ~~p~~aVA~GAa~~a~~~~~ 413 (573)
.||..|.|+|...+|..+.+
T Consensus 320 ~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 320 DESQFANVRGYYKYGELLKN 339 (344)
T ss_pred CChHHHHHHHHHHHHHHHhc
Confidence 89999999999999987655
No 36
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.53 E-value=2.6e-12 Score=136.11 Aligned_cols=204 Identities=11% Similarity=0.072 Sum_probs=129.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-cCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEE
Q 008233 165 RNVVLTIPVSFSRFQLTRIERACAM-AGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVS 243 (573)
Q Consensus 165 ~~~ViTVPa~f~~~qr~~l~~Aa~~-AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~ 243 (573)
..+++|.|..++..+|+.+.+.+-. .+++-+.+..+|.+|++++........ .....+-||+|+|.++++++-+
T Consensus 103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~-----~~g~~tglVVDiG~~~T~i~PV 177 (414)
T PTZ00280 103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKE-----LGGTLTGTVIDSGDGVTHVIPV 177 (414)
T ss_pred CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccc-----cCCceeEEEEECCCCceEEEEE
Confidence 4689999999999999998887644 488999999999999987643221100 0013456999999999998866
Q ss_pred EEeCCeEEEEEeeccccchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCc-------------
Q 008233 244 ATAGGVSQIKALSGSAIGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSET------------- 310 (573)
Q Consensus 244 ~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~------------- 310 (573)
.- |..--.+....++||+++|+.|.++|.++.. .+... .....++.+|+.++...
T Consensus 178 ~~--G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~-----~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~ 245 (414)
T PTZ00280 178 VD--GYVIGSSIKHIPLAGRDITNFIQQMLRERGE-----PIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSD 245 (414)
T ss_pred EC--CEEcccceEEecCcHHHHHHHHHHHHHHcCC-----CCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcC
Confidence 52 3322122223349999999999998865321 11111 11234555666553210
Q ss_pred ----eEEEEEE-ecCCeeEEEEEcHHHHHH---HHHHHH------HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCc
Q 008233 311 ----SVQINVD-LGNGLKVSKNVTREEFEE---VNQKVF------EKCGSLITQCLHDAKVE--IEDLNDVILVGGCSYI 374 (573)
Q Consensus 311 ----~~~i~i~-l~~g~d~~~~itr~~fe~---l~~~~~------~~~~~~i~~~l~~~~~~--~~~i~~V~LvGG~s~~ 374 (573)
...+..+ ..+|....+.|..+.|.. ++.|-+ ..+.++|.++|.++..+ ..=.+.|+|+||+|.+
T Consensus 246 ~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~ 325 (414)
T PTZ00280 246 PKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMF 325 (414)
T ss_pred cccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccC
Confidence 0112222 122444577888877752 344422 14567777777765432 2234679999999999
Q ss_pred HHHHHHHHhHc
Q 008233 375 PKVRNLVQSTC 385 (573)
Q Consensus 375 p~v~~~l~~~f 385 (573)
|.+.++|++.+
T Consensus 326 ~Gf~eRL~~El 336 (414)
T PTZ00280 326 KGFDKRLQRDV 336 (414)
T ss_pred cCHHHHHHHHH
Confidence 99999998777
No 37
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.51 E-value=6e-14 Score=126.00 Aligned_cols=195 Identities=19% Similarity=0.250 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCcc
Q 008233 147 IFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEK 226 (573)
Q Consensus 147 ~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~ 226 (573)
.+.+.+++.+|+.+|.+++...-++|..--....+...+..+.||++++..++||+|||.-..+ +
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l---------------~ 140 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQL---------------D 140 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhcc---------------C
Confidence 3578889999999999999999999998877777888888899999999999999999863332 2
Q ss_pred EEEEEecCCceeEEEEEEEeCCeEEEEEeeccccchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhc
Q 008233 227 IAVIFNMGAGYCDVTVSATAGGVSQIKALSGSAIGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKL 306 (573)
Q Consensus 227 ~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~L 306 (573)
.-.|+|+||||+-+|+++-.+ |+.+.-..-||..+.-.|+- .++++ .++||+.|..-
T Consensus 141 dg~VVDiGGGTTGIsi~kkGk----Viy~ADEpTGGtHmtLvlAG--------~ygi~-----------~EeAE~~Kr~~ 197 (277)
T COG4820 141 DGGVVDIGGGTTGISIVKKGK----VIYSADEPTGGTHMTLVLAG--------NYGIS-----------LEEAEQYKRGH 197 (277)
T ss_pred CCcEEEeCCCcceeEEEEcCc----EEEeccCCCCceeEEEEEec--------ccCcC-----------HhHHHHhhhcc
Confidence 346899999999999998664 44444334888776644432 22322 24455555422
Q ss_pred CCCceEEEEEEecCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcC
Q 008233 307 SSETSVQINVDLGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCK 386 (573)
Q Consensus 307 S~~~~~~i~i~l~~g~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~ 386 (573)
-.. +|.--.+.|++++..+.+.+.++..+ +..++|+||+|.-|.+.+..++.|
T Consensus 198 k~~---------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l- 250 (277)
T COG4820 198 KKG---------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL- 250 (277)
T ss_pred ccc---------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-
Confidence 111 11122467889999999999888765 557999999999999999999999
Q ss_pred CccccCCCCCccceehhHHH
Q 008233 387 KVELYEGINPLEAAVSGAAL 406 (573)
Q Consensus 387 ~~~i~~~~~p~~aVA~GAa~ 406 (573)
..++..+..|....-.|-|+
T Consensus 251 ~l~v~~P~~p~y~TPLgIA~ 270 (277)
T COG4820 251 ALQVHLPQHPLYMTPLGIAS 270 (277)
T ss_pred ccccccCCCcceechhhhhh
Confidence 88998888888777777765
No 38
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.49 E-value=1.5e-12 Score=133.17 Aligned_cols=208 Identities=18% Similarity=0.257 Sum_probs=133.9
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHc---------CCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEec
Q 008233 163 PIRNVVLTIPVSFSRFQLTRIERACAMA---------GLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNM 233 (573)
Q Consensus 163 ~~~~~ViTVPa~f~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~ 233 (573)
.+..+|+..|..+...||+.+++..... -+..+.+++||.+|.+.|..+..... .....++|+|+
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~------~~~~~~lVIDI 174 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLL------TGKEQSLIIDP 174 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcc------cCcCcEEEEec
Confidence 4567999999999988999999886532 23457899999999888776432110 13677899999
Q ss_pred CCceeEEEEEEEeCCeEEEEEeeccc-cchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceE
Q 008233 234 GAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSV 312 (573)
Q Consensus 234 GggT~Dvsv~~~~~~~~~v~~~~g~~-lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~ 312 (573)
|++|+|+.+++ +..+ +...++.. .|-.++-+.+.+.+.+++.. +...+...+. .+.++-|.
T Consensus 175 G~~TtD~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g~----~~~~~~~~i~---~~l~~g~~-------- 236 (320)
T TIGR03739 175 GYFTFDWLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIGT----PAYRDIDRID---LALRTGKQ-------- 236 (320)
T ss_pred CCCeeeeehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhcCC----CCccCHHHHH---HHHHhCCc--------
Confidence 99999997763 4444 34445555 99999999888888776642 2111111211 11111110
Q ss_pred EEEEEecCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccC
Q 008233 313 QINVDLGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYE 392 (573)
Q Consensus 313 ~i~i~l~~g~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~ 392 (573)
+. ..|. .+.|+ +.-+..+..++++..-|.+.+. ...+++.|+|+||++. .+++.|++.||..++..
T Consensus 237 -~~---~~gk--~~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~ 302 (320)
T TIGR03739 237 -PR---IYQK--PVDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVE 302 (320)
T ss_pred -ee---ecce--ecCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEe
Confidence 00 1121 12222 2222333444444444443332 1245889999999988 78999999998777667
Q ss_pred CCCCccceehhHHHHh
Q 008233 393 GINPLEAAVSGAALEG 408 (573)
Q Consensus 393 ~~~p~~aVA~GAa~~a 408 (573)
..||..|.|+|-..++
T Consensus 303 ~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 303 VDEPMFANVRGFQIAG 318 (320)
T ss_pred cCCcHHHHHHHHHHhh
Confidence 7899999999988775
No 39
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.46 E-value=2.7e-12 Score=135.63 Aligned_cols=308 Identities=17% Similarity=0.183 Sum_probs=176.4
Q ss_pred eEEEEEcCccceEEEEEeCCcEEEEecCCCCccceEEEEEeCC-----ceEEcCChHHHhhhccCccchhhHhhHhcCCC
Q 008233 27 IAIGIDIGTSQCSIAFWNGSEVELIKNTRNQKVMRSYVTFKDE-----VPAGGVSTQLSHEHEMLSGAAIFNMKRLIGRV 101 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~-----~~~vG~~~~~A~~~~~~p~~~i~~~k~~lg~~ 101 (573)
.+|-||+|+.++++++..+..|.. .+||++..... ...+| ..+... .+...
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~~--------v~ps~~~~~~~~~~~~~~~~g---~~~~~~--~~~~~----------- 60 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPRV--------VIPSVVGRPRDKNSSNDYYVG---DEALSP--RSNLE----------- 60 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-SE--------EEESEEEEESSSSSSSSCEET---HHHHHT--GTGEE-----------
T ss_pred CEEEEECCCceEEEEECCCCCCCC--------cCCCccccccccccceeEEee---cccccc--hhhee-----------
Confidence 688999999999999975554443 37888877332 35788 653321 00000
Q ss_pred CCChhhhhcCCCCeeEEEeeCCCccEEEEEecCceeeeCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHH
Q 008233 102 DTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLT 181 (573)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~ 181 (573)
-..|+ -+|. +.--+....+++++.... -.....-..++++.|..++..+|+
T Consensus 61 ---------~~~p~----------------~~g~---i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~ 111 (393)
T PF00022_consen 61 ---------LRSPI----------------ENGV---IVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQRE 111 (393)
T ss_dssp ---------EEESE----------------ETTE---ESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHH
T ss_pred ---------eeeec----------------cccc---cccccccccccccccccc-cccccccceeeeeccccCCchhhh
Confidence 00011 0111 222234455566554432 111223467999999999999998
Q ss_pred HHHHHH-HHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-
Q 008233 182 RIERAC-AMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA- 259 (573)
Q Consensus 182 ~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~- 259 (573)
.+.+.+ +..|++-+.++++|.+|+++++ ..+-||+|+|.+.+.++-+. +|.. +.......
T Consensus 112 ~l~e~lfE~~~~~~v~~~~~~~~a~~~~g---------------~~tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~ 173 (393)
T PF00022_consen 112 KLAEILFEKFGVPSVYFIPSPLLALYASG---------------RTTGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSP 173 (393)
T ss_dssp HHHHHHHHTS--SEEEEEEHHHHHHHHTT---------------BSSEEEEEESSS-EEEEEEE--TTEE--GGGBEEES
T ss_pred hhhhhhhcccccceeeeeecccccccccc---------------cccccccccceeeeeeeeee--eccc-ccccccccc
Confidence 887775 5669999999999999987664 34569999999999887663 3422 12222233
Q ss_pred cchHHHHHHHHHHHHHh-hhhhcCCCCc------cCHHHHHHHHHHHHHhhhhc---C------------CCceEEEEEE
Q 008233 260 IGGEDLLQNMMRHLMPN-SESLFSSYGM------NEIKSMALLRVATQDAIHKL---S------------SETSVQINVD 317 (573)
Q Consensus 260 lGG~~iD~~l~~~l~~~-~~~~~~~~~~------~~~~~~~~L~~~~e~~K~~L---S------------~~~~~~i~i~ 317 (573)
+||.++++.|.+++.++ +......... ........-...++.+|+.+ + ......+.
T Consensus 174 ~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~-- 251 (393)
T PF00022_consen 174 IGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYE-- 251 (393)
T ss_dssp -SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE--
T ss_pred ccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecc--
Confidence 99999999999999884 1100000000 00000001112222333222 1 12222333
Q ss_pred ecCCeeEEEEEcHHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCcC--CCCeEEEEcCCcCcHHHHH
Q 008233 318 LGNGLKVSKNVTREEFEEVNQKVFE----------------KCGSLITQCLHDAKVEIE--DLNDVILVGGCSYIPKVRN 379 (573)
Q Consensus 318 l~~g~d~~~~itr~~fe~l~~~~~~----------------~~~~~i~~~l~~~~~~~~--~i~~V~LvGG~s~~p~v~~ 379 (573)
+.+|. .+.+..+.|. +.+.+|+ .+.++|.+++.++..+.. -...|+|+||+|++|.+.+
T Consensus 252 lPdg~--~i~~~~er~~-~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~e 328 (393)
T PF00022_consen 252 LPDGQ--TIILGKERFR-IPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKE 328 (393)
T ss_dssp -TTSS--EEEESTHHHH-HHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHH
T ss_pred ccccc--cccccccccc-ccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHH
Confidence 34664 5666666553 3343333 477788888877643321 1368999999999999999
Q ss_pred HHHhHcCC-------ccccCCC-CCccceehhHHHHhHH
Q 008233 380 LVQSTCKK-------VELYEGI-NPLEAAVSGAALEGAV 410 (573)
Q Consensus 380 ~l~~~f~~-------~~i~~~~-~p~~aVA~GAa~~a~~ 410 (573)
+|.+.+.. .++.... +|..++=.||+++|..
T Consensus 329 RL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 329 RLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp HHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred HHHHHhhhhhhccccceeccCchhhhhcccccceeeecc
Confidence 99877622 2344455 8999999999999864
No 40
>PTZ00452 actin; Provisional
Probab=99.40 E-value=7.6e-11 Score=122.94 Aligned_cols=217 Identities=14% Similarity=0.162 Sum_probs=138.3
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEE
Q 008233 164 IRNVVLTIPVSFSRFQLTRIERAC-AMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTV 242 (573)
Q Consensus 164 ~~~~ViTVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv 242 (573)
-..+++|-|...+..+|+.|.+.+ +.-+++.+.+.+.|.+++++++ ..+-||+|+|.+.+.++-
T Consensus 100 ~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g---------------~~tglVVDiG~~~t~v~P 164 (375)
T PTZ00452 100 DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSG---------------KTIGLVVDSGEGVTHCVP 164 (375)
T ss_pred cCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCC---------------CceeeeecCCCCcceEEE
Confidence 357899999999999999887775 5568888999999999987642 356799999999998875
Q ss_pred EEEeCCeEEEEEeeccccchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCC-------------
Q 008233 243 SATAGGVSQIKALSGSAIGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSE------------- 309 (573)
Q Consensus 243 ~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~------------- 309 (573)
+- +|..--.+....++||.++++.|.+.|.++ +..+... .. ...++.+|+.++..
T Consensus 165 V~--dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~-~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~ 232 (375)
T PTZ00452 165 VF--EGHQIPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEP-HQ----RIIVKNIKERLCYTALDPQDEKRIYKE 232 (375)
T ss_pred EE--CCEEeccceEEeeccchHHHHHHHHHHHhc-----CCCCCCH-HH----HHHHHHHHHHhccccCcHHHHHHHhhc
Confidence 54 333222233333499999999999887542 1111111 00 11234444443211
Q ss_pred -ceEEEEEEecCCeeEEEEEcHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCcHHHH
Q 008233 310 -TSVQINVDLGNGLKVSKNVTREEFE---EVNQKVF-----EKCGSLITQCLHDAKVE--IEDLNDVILVGGCSYIPKVR 378 (573)
Q Consensus 310 -~~~~i~i~l~~g~d~~~~itr~~fe---~l~~~~~-----~~~~~~i~~~l~~~~~~--~~~i~~V~LvGG~s~~p~v~ 378 (573)
.......++.+|. .+++..+.|. -+++|-+ ..+.++|.+++..+..+ ..=...|+|+||+|.+|.+.
T Consensus 233 ~~~~~~~y~LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~ 310 (375)
T PTZ00452 233 SNSQDSPYKLPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIA 310 (375)
T ss_pred cCCcCceEECCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHH
Confidence 1111122355665 4566676662 2233322 13566777777765332 22346899999999999999
Q ss_pred HHHHhHc----CC---ccccCCCCCccceehhHHHHhH
Q 008233 379 NLVQSTC----KK---VELYEGINPLEAAVSGAALEGA 409 (573)
Q Consensus 379 ~~l~~~f----~~---~~i~~~~~p~~aVA~GAa~~a~ 409 (573)
++|++.+ |. .++..+.++..++=.|++++|.
T Consensus 311 ~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 311 NRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 9887765 21 2244455667788899999985
No 41
>PTZ00004 actin-2; Provisional
Probab=99.38 E-value=5.3e-11 Score=124.59 Aligned_cols=217 Identities=13% Similarity=0.147 Sum_probs=139.7
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEE
Q 008233 164 IRNVVLTIPVSFSRFQLTRIERAC-AMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTV 242 (573)
Q Consensus 164 ~~~~ViTVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv 242 (573)
-..+++|-|..++..+|+.+.+.+ +..|++.+.++.+|.+|+++++ ..+=+|+|+|.+.++++-
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g---------------~~tglVVDiG~~~t~v~p 165 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASG---------------RTTGIVLDSGDGVSHTVP 165 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcC---------------CceEEEEECCCCcEEEEE
Confidence 356889999999999998777665 5679999999999999988653 346699999999998876
Q ss_pred EEEeCCeEEEEEeeccccchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCC-------------
Q 008233 243 SATAGGVSQIKALSGSAIGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSE------------- 309 (573)
Q Consensus 243 ~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~------------- 309 (573)
+. +|..-..+....++||.++++.|.+.|..+- + .+. +... ...++..|+.+...
T Consensus 166 V~--dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~---~--~~~--~~~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~ 233 (378)
T PTZ00004 166 IY--EGYSLPHAIHRLDVAGRDLTEYMMKILHERG---T--TFT--TTAE---KEIVRDIKEKLCYIALDFDEEMGNSAG 233 (378)
T ss_pred EE--CCEEeecceeeecccHHHHHHHHHHHHHhcC---C--CCC--cHHH---HHHHHHHhhcceeecCCHHHHHhhhhc
Confidence 54 3332222333334999999999999885431 1 111 1110 12244445443211
Q ss_pred --ceEEEEEEecCCeeEEEEEcHHHHH---HHHHHH------HHHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCcHH
Q 008233 310 --TSVQINVDLGNGLKVSKNVTREEFE---EVNQKV------FEKCGSLITQCLHDAKVE--IEDLNDVILVGGCSYIPK 376 (573)
Q Consensus 310 --~~~~i~i~l~~g~d~~~~itr~~fe---~l~~~~------~~~~~~~i~~~l~~~~~~--~~~i~~V~LvGG~s~~p~ 376 (573)
........+.+|.. +.+..+.|. -++.|- ...+.++|.+++.++..+ ..=...|+|+||+|.+|.
T Consensus 234 ~~~~~~~~y~lPdg~~--i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~G 311 (378)
T PTZ00004 234 SSDKYEESYELPDGTI--ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRG 311 (378)
T ss_pred CccccceEEECCCCCE--EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcC
Confidence 10112233556653 455666553 344442 224566777777765432 112357999999999999
Q ss_pred HHHHHHhHc----CC---ccccCCCCCccceehhHHHHhH
Q 008233 377 VRNLVQSTC----KK---VELYEGINPLEAAVSGAALEGA 409 (573)
Q Consensus 377 v~~~l~~~f----~~---~~i~~~~~p~~aVA~GAa~~a~ 409 (573)
+.++|+..+ |. .++....++..++=.||+++|.
T Consensus 312 f~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 312 LPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 999987766 21 2344456778888899999885
No 42
>PTZ00466 actin-like protein; Provisional
Probab=99.35 E-value=1.9e-10 Score=120.07 Aligned_cols=216 Identities=12% Similarity=0.144 Sum_probs=138.6
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEE
Q 008233 164 IRNVVLTIPVSFSRFQLTRIERAC-AMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTV 242 (573)
Q Consensus 164 ~~~~ViTVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv 242 (573)
-..+++|-|..++..+|+.+.+.+ +..+++-+.+.++|.+|+++++ ..+-+|+|+|.+.+.++-
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g---------------~~tglVVD~G~~~t~v~P 170 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCG---------------KTNGTVLDCGDGVCHCVS 170 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcC---------------CceEEEEeCCCCceEEEE
Confidence 356889999999999999987765 5568888999999999987653 357799999999998865
Q ss_pred EEEeCCeEEEEEeeccccchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCC-------------C
Q 008233 243 SATAGGVSQIKALSGSAIGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSS-------------E 309 (573)
Q Consensus 243 ~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~-------------~ 309 (573)
+. +|..-..+....++||.++++.|.+.+.++ +.... .. .-+..++.+|+.+.. .
T Consensus 171 V~--~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~-~~----~~~~~v~~iKe~~c~v~~d~~~e~~~~~~ 238 (380)
T PTZ00466 171 IY--EGYSITNTITRTDVAGRDITTYLGYLLRKN-----GHLFN-TS----AEMEVVKNMKENCCYVSFNMNKEKNSSEK 238 (380)
T ss_pred EE--CCEEeecceeEecCchhHHHHHHHHHHHhc-----CCCCC-cH----HHHHHHHHHHHhCeEecCChHHHHhhccc
Confidence 54 333222222333499999999999887542 11111 01 112234445554421 0
Q ss_pred ceEEEEEEecCCeeEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCcHHHH
Q 008233 310 TSVQINVDLGNGLKVSKNVTREEFEEVNQKVFE---------KCGSLITQCLHDAKVE--IEDLNDVILVGGCSYIPKVR 378 (573)
Q Consensus 310 ~~~~i~i~l~~g~d~~~~itr~~fe~l~~~~~~---------~~~~~i~~~l~~~~~~--~~~i~~V~LvGG~s~~p~v~ 378 (573)
.......++.+|. .+.+..+.|. +.+.+|+ .+.++|.+++.++..+ ..=...|+|+||+|.+|.+.
T Consensus 239 ~~~~~~y~LPdg~--~i~l~~er~~-~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~ 315 (380)
T PTZ00466 239 ALTTLPYILPDGS--QILIGSERYR-APEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFG 315 (380)
T ss_pred cccceeEECCCCc--EEEEchHHhc-CcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHH
Confidence 1111223355664 4556666663 2333332 3556677777765432 12246799999999999999
Q ss_pred HHHHhHcCC-------ccccCCCCCccceehhHHHHhH
Q 008233 379 NLVQSTCKK-------VELYEGINPLEAAVSGAALEGA 409 (573)
Q Consensus 379 ~~l~~~f~~-------~~i~~~~~p~~aVA~GAa~~a~ 409 (573)
++|+..+.. .++....++..++=+||+++|.
T Consensus 316 ~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 316 DRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 998877621 2344455677888899999985
No 43
>PTZ00281 actin; Provisional
Probab=99.34 E-value=5.6e-11 Score=124.24 Aligned_cols=217 Identities=15% Similarity=0.193 Sum_probs=138.2
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEE
Q 008233 164 IRNVVLTIPVSFSRFQLTRIERA-CAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTV 242 (573)
Q Consensus 164 ~~~~ViTVPa~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv 242 (573)
-..+++|-|..+...+|+.|.+. .+..+++-+.+..+|.+++++++ ..+-||+|+|.+.+.++-
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g---------------~~tglVVDiG~~~t~v~P 165 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG---------------RTTGIVMDSGDGVSHTVP 165 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcC---------------CceEEEEECCCceEEEEE
Confidence 35688999999999999998875 46678898999999999987643 346799999999998764
Q ss_pred EEEeCCeEEEEEeeccccchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCc------------
Q 008233 243 SATAGGVSQIKALSGSAIGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSET------------ 310 (573)
Q Consensus 243 ~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~------------ 310 (573)
+.- |..-..+....++||.++++.|.+.|..+- ..+.. ... ...++.+|+.++...
T Consensus 166 V~d--G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~-~~~----~~~~~~iKe~~c~v~~d~~~~~~~~~~ 233 (376)
T PTZ00281 166 IYE--GYALPHAILRLDLAGRDLTDYMMKILTERG-----YSFTT-TAE----REIVRDIKEKLAYVALDFEAEMQTAAS 233 (376)
T ss_pred EEe--cccchhheeeccCcHHHHHHHHHHHHHhcC-----CCCCc-HHH----HHHHHHHHHhcEEecCCchHHHHhhhc
Confidence 432 222212223333999999999998886531 11110 100 123455555542110
Q ss_pred --eEEEEEEecCCeeEEEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCc--CCCCeEEEEcCCcCcHHHH
Q 008233 311 --SVQINVDLGNGLKVSKNVTREEF---EEVNQKVF-----EKCGSLITQCLHDAKVEI--EDLNDVILVGGCSYIPKVR 378 (573)
Q Consensus 311 --~~~i~i~l~~g~d~~~~itr~~f---e~l~~~~~-----~~~~~~i~~~l~~~~~~~--~~i~~V~LvGG~s~~p~v~ 378 (573)
......++.+|. .+++..+.| |.++.|-+ ..+.++|.+++.++..+. .=.+.|+|+||+|.+|.+.
T Consensus 234 ~~~~~~~y~LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~ 311 (376)
T PTZ00281 234 SSALEKSYELPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIA 311 (376)
T ss_pred CcccceeEECCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHH
Confidence 111122255664 355665555 22333321 135667777777653221 1235799999999999999
Q ss_pred HHHHhHc----CC---ccccCCCCCccceehhHHHHhH
Q 008233 379 NLVQSTC----KK---VELYEGINPLEAAVSGAALEGA 409 (573)
Q Consensus 379 ~~l~~~f----~~---~~i~~~~~p~~aVA~GAa~~a~ 409 (573)
++|+..+ |. .++..+.++..++=+||+++|.
T Consensus 312 ~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 312 DRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 9887665 21 2344556778899999999986
No 44
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.29 E-value=1.8e-11 Score=124.80 Aligned_cols=173 Identities=18% Similarity=0.245 Sum_probs=100.6
Q ss_pred CeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cchHHHHHHHHH
Q 008233 193 HVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNMMR 271 (573)
Q Consensus 193 ~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lGG~~iD~~l~~ 271 (573)
..+.+++||.||.+.+..... +...+||+|+||+|+|+++++ ++.-.+....+.. +|-..+-.++.+
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~----------~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~ 208 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD----------EDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQ 208 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-----------TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHH
T ss_pred eeEEEEcccHHHHHHHHHhhc----------ccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHH
Confidence 357889999999998776622 246799999999999999886 2222344556666 999998888888
Q ss_pred HHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEEecCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Q 008233 272 HLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVDLGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQC 351 (573)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~l~~g~d~~~~itr~~fe~l~~~~~~~~~~~i~~~ 351 (573)
.|... .... +......+.+.... +..++. ..+.. =-++++.+.++..++++.+-|.+.
T Consensus 209 ~l~~~-~~~~------s~~~~~~ii~~~~~-~~~~~~---------~i~~~-----~~~~~v~~~i~~~~~~l~~~i~~~ 266 (318)
T PF06406_consen 209 ALRSA-GIDT------SELQIDDIIRNRKD-KGYLRQ---------VINDE-----DVIDDVSEVIEEAVEELINRILRE 266 (318)
T ss_dssp HTT---SBHH------HHHHHHHHHHTTT--HHHHHH---------HSSSH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-cCCC------cHHHHHHHHHhhhc-cceecc---------cccch-----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77652 1100 11111111110000 000000 00000 012344444555555555544444
Q ss_pred HHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcC--CccccCCCCCccceehhHH
Q 008233 352 LHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCK--KVELYEGINPLEAAVSGAA 405 (573)
Q Consensus 352 l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~--~~~i~~~~~p~~aVA~GAa 405 (573)
+.+ ..+++.|+|+||++. .+.+.|++.|+ ..++....||+.|.|+|-+
T Consensus 267 ~~~----~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 267 LGD----FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HTT----S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred Hhh----hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 432 346789999999987 89999999985 4577888999999999965
No 45
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.22 E-value=1.1e-09 Score=113.85 Aligned_cols=162 Identities=14% Similarity=0.087 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHcCCCeeeeechhHHHHHHHHH-hhcccccccCCCCCcc-EEEEEecCCceeEEEEEEEeCCeEEEEE
Q 008233 177 RFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQ-QQQQSVHENLGSGSEK-IAVIFNMGAGYCDVTVSATAGGVSQIKA 254 (573)
Q Consensus 177 ~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~-~~~~~~~~~~~~~~~~-~vlV~D~GggT~Dvsv~~~~~~~~~v~~ 254 (573)
....+.+.++++.||+++..+..+|.|.+-.+.. ...... ..... .++++|+|++++++++++-. .+..
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~-----~~~~~~~~~lvdiG~~~t~l~i~~~g----~~~~ 212 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLAS-----RTYRLTDAALVDIGATSSTLNLLHPG----RMLF 212 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCcc-----ccccCceEEEEEECCCcEEEEEEECC----eEEE
Confidence 4677888999999999999999999998766641 110000 01133 49999999999999998643 2233
Q ss_pred eeccccchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEEecCCeeEEEEEcHHHHH
Q 008233 255 LSGSAIGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVDLGNGLKVSKNVTREEFE 334 (573)
Q Consensus 255 ~~g~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~l~~g~d~~~~itr~~fe 334 (573)
.....+||.+|++.+.+.+ +.+ ...||+.|..-..... .-.
T Consensus 213 ~r~i~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~~--------------------~~~ 253 (348)
T TIGR01175 213 TREVPFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPLL--------------------YDP 253 (348)
T ss_pred EEEeechHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCCc--------------------hhH
Confidence 4444499999999887433 111 2557777764321110 012
Q ss_pred HHHHHHHHHHHHHHHHHHHHc--CCCcCCCCeEEEEcCCcCcHHHHHHHHhHcC
Q 008233 335 EVNQKVFEKCGSLITQCLHDA--KVEIEDLNDVILVGGCSYIPKVRNLVQSTCK 386 (573)
Q Consensus 335 ~l~~~~~~~~~~~i~~~l~~~--~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~ 386 (573)
+++++.++++...|.+.|+-. ......++.|+|+||+++++.+.+.+++.|+
T Consensus 254 ~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 254 EVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 355666677777777777532 2233468999999999999999999999993
No 46
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.15 E-value=1.7e-09 Score=111.78 Aligned_cols=183 Identities=18% Similarity=0.188 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeec
Q 008233 178 FQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG 257 (573)
Q Consensus 178 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g 257 (573)
..-+...++++.|||++..+=-+|.|.+-.|........ .....+.++++|+|+.++.+.++.-. ....+..
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~----~~~~~~~~~lvdiG~~~t~~~i~~~g----~~~f~R~ 207 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLP----DEEDAETVALVDIGASSTTVIIFQNG----KPIFSRS 207 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST--------T-EEEEEEE-SS-EEEEEEETT----EEEEEEE
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCC----cccccceEEEEEecCCeEEEEEEECC----EEEEEEE
Confidence 667788899999999998887777776554444221110 00125689999999999999987743 2334444
Q ss_pred cccchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEEecCCeeEEEEEcHHHHHHHH
Q 008233 258 SAIGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVDLGNGLKVSKNVTREEFEEVN 337 (573)
Q Consensus 258 ~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~l~~g~d~~~~itr~~fe~l~ 337 (573)
..+||.++++.|++.+.-. ..+||+.|..-+.. + +...+.+
T Consensus 208 i~~G~~~l~~~i~~~~~i~-------------------~~~Ae~~k~~~~l~----------~----------~~~~~~l 248 (340)
T PF11104_consen 208 IPIGGNDLTEAIARELGID-------------------FEEAEELKRSGGLP----------E----------EYDQDAL 248 (340)
T ss_dssp ES-SHHHHHHHHHHHTT---------------------HHHHHHHHHHT--------------------------HHHHH
T ss_pred EeeCHHHHHHHHHHhcCCC-------------------HHHHHHHHhcCCCC----------c----------chHHHHH
Confidence 5699999999998754221 13455555432100 0 3334566
Q ss_pred HHHHHHHHHHHHHHHHH--cCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccc---------cCCC----------CC
Q 008233 338 QKVFEKCGSLITQCLHD--AKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVEL---------YEGI----------NP 396 (573)
Q Consensus 338 ~~~~~~~~~~i~~~l~~--~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i---------~~~~----------~p 396 (573)
.+.++++...|.+.++- .......|+.|+|+||++++|.|.+.|++.+ +.++ .... .|
T Consensus 249 ~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~~~~ 327 (340)
T PF11104_consen 249 RPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQEDAP 327 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhhhhh
Confidence 77777777777777763 2234557999999999999999999999999 4332 1111 25
Q ss_pred ccceehhHHHHh
Q 008233 397 LEAAVSGAALEG 408 (573)
Q Consensus 397 ~~aVA~GAa~~a 408 (573)
..++|.|.|+..
T Consensus 328 ~~avA~GLAlR~ 339 (340)
T PF11104_consen 328 QFAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcC
Confidence 578999999864
No 47
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.91 E-value=9.6e-08 Score=94.68 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHcCC--CCCeEEEEeCCCCCHHHHHHHHHH-HHHcCCCeeeeechhHHHHHHHHHhhccccccc
Q 008233 143 EVLAIFLVELRAMAETQLKR--PIRNVVLTIPVSFSRFQLTRIERA-CAMAGLHVLRLMPEPTAVALLYAQQQQQSVHEN 219 (573)
Q Consensus 143 ~l~~~~L~~l~~~a~~~~~~--~~~~~ViTVPa~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~ 219 (573)
++..+.++|..+. ++.. .-.-++||-|++=+.+.|+.+.+. .+...++...|+.+|+++|++-+
T Consensus 86 D~~~~~w~~~~~~---~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G---------- 152 (426)
T KOG0679|consen 86 DLFEMQWRYAYKN---QLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG---------- 152 (426)
T ss_pred HHHHHHHHHHHhh---hhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC----------
Confidence 4455556665532 3332 235689999998888889877766 46678889999999999998643
Q ss_pred CCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccccchHHHHHHHHHHHHHh
Q 008233 220 LGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSAIGGEDLLQNMMRHLMPN 276 (573)
Q Consensus 220 ~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l~~~ 276 (573)
..+-||+|+|++++.++=+ .+|.+--.+.....+||+.++..+.+.|..+
T Consensus 153 -----rstalVvDiGa~~~svsPV--~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 153 -----RSTALVVDIGATHTSVSPV--HDGYVLQKGVVKSPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred -----CCceEEEEecCCCceeeee--ecceEeeeeeEecccchHHHHHHHHHHHhhc
Confidence 5678999999999977644 4554444555556699999999999998765
No 48
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.76 E-value=1.5e-07 Score=97.62 Aligned_cols=159 Identities=9% Similarity=0.111 Sum_probs=94.8
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH------------cCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEE
Q 008233 164 IRNVVLTIPVSFSRFQLTRIERACAM------------AGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIF 231 (573)
Q Consensus 164 ~~~~ViTVPa~f~~~qr~~l~~Aa~~------------AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~ 231 (573)
..-.+||.++. .++.++++++. ||+++..++. |-|++.+...+ . ++..++++
T Consensus 88 ~~ahIITg~~~----~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse--E---------ke~gVa~I 151 (475)
T PRK10719 88 SGAVIITGETA----RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE--E---------RNTRVLNI 151 (475)
T ss_pred ccEEEEEechh----HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh--h---------ccCceEEE
Confidence 34578888764 44555555555 6777766666 98888866533 2 27889999
Q ss_pred ecCCceeEEEEEEEeCCeEEEEEeeccccchHHHHHHHHHHHHHhhhhhcCCCCc-cCHHHHHHHHHHHHHhhhhcCCCc
Q 008233 232 NMGAGYCDVTVSATAGGVSQIKALSGSAIGGEDLLQNMMRHLMPNSESLFSSYGM-NEIKSMALLRVATQDAIHKLSSET 310 (573)
Q Consensus 232 D~GggT~Dvsv~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l~~~~~~~~~~~~~-~~~~~~~~L~~~~e~~K~~LS~~~ 310 (573)
|+||||+++++++-. ++..+...++||+.+... -+ + .+. -++. .++|.+.+ -
T Consensus 152 DIGgGTT~iaVf~~G----~l~~T~~l~vGG~~IT~D-~~----------~-~i~yis~~-~~~l~~~~---~------- 204 (475)
T PRK10719 152 DIGGGTANYALFDAG----KVIDTACLNVGGRLIETD-SQ----------G-RVTYISPP-GQMILDEL---G------- 204 (475)
T ss_pred EeCCCceEEEEEECC----EEEEEEEEecccceEEEC-CC----------C-CEEEEChH-HHHHHHHc---C-------
Confidence 999999999999854 344555555999877632 10 0 000 1122 22232221 0
Q ss_pred eEEEEEEecCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHH--------HHHcCCC-cCCCCeEEEEcCCcCc
Q 008233 311 SVQINVDLGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQC--------LHDAKVE-IEDLNDVILVGGCSYI 374 (573)
Q Consensus 311 ~~~i~i~l~~g~d~~~~itr~~fe~l~~~~~~~~~~~i~~~--------l~~~~~~-~~~i~~V~LvGG~s~~ 374 (573)
+.+ . .--.++.+++..+|+-+.+-+.+.+... +....++ ...++.|.+.||-+..
T Consensus 205 ---~~~--~----~G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~ 268 (475)
T PRK10719 205 ---LAI--T----DGRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDC 268 (475)
T ss_pred ---CCc--c----ccccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhh
Confidence 000 1 1234666888887777766666665411 1111222 3578999999998874
No 49
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.58 E-value=3.5e-06 Score=88.87 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=70.0
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEE
Q 008233 164 IRNVVLTIPVSFSRFQLTRIERA-CAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTV 242 (573)
Q Consensus 164 ~~~~ViTVPa~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv 242 (573)
-..+++|-|..+...+|..+.+. .+...++.+.+..++.+++++.+.. ..+-+|+|+|.+.++++=
T Consensus 106 ~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~-------------~~~g~ViD~G~~~t~v~P 172 (444)
T COG5277 106 EHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSS-------------DETGLVIDSGDSVTHVIP 172 (444)
T ss_pred CCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCC-------------CCceEEEEcCCCceeeEe
Confidence 35799999999999999877666 4566777777777777776544321 248899999999998875
Q ss_pred EEEeCCeEEEEEeeccccchHHHHHHHHHHHHHh
Q 008233 243 SATAGGVSQIKALSGSAIGGEDLLQNMMRHLMPN 276 (573)
Q Consensus 243 ~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l~~~ 276 (573)
+- +|..--.+.....+||++++..|.+.|...
T Consensus 173 V~--DG~~l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 173 VV--DGIVLPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred ee--ccccccccceeeecCcHHHHHHHHHHHhhc
Confidence 44 222211222333399999999999988774
No 50
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.57 E-value=8.1e-06 Score=91.47 Aligned_cols=268 Identities=19% Similarity=0.242 Sum_probs=163.4
Q ss_pred eCHHHHHHHHHHHHHHHHHHHcCC--------------CCCeEEEEeCCCCCHHHHHHHHHHHHHc--------CCC---
Q 008233 139 TTPEEVLAIFLVELRAMAETQLKR--------------PIRNVVLTIPVSFSRFQLTRIERACAMA--------GLH--- 193 (573)
Q Consensus 139 ~~~~~l~~~~L~~l~~~a~~~~~~--------------~~~~~ViTVPa~f~~~qr~~l~~Aa~~A--------Gl~--- 193 (573)
||-..+..+.|..+..+|..+.+. ...++++|||......+|+.++++++.| |.+
T Consensus 417 ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lGw~~~~ 496 (1002)
T PF07520_consen 417 YSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALGWHPWD 496 (1002)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 777889999999998888776653 2467999999999999999999988765 432
Q ss_pred ------------------eeeeechhHHHHHHHHHhhcccc-------------c------ccCCCCCccEEEEEecCCc
Q 008233 194 ------------------VLRLMPEPTAVALLYAQQQQQSV-------------H------ENLGSGSEKIAVIFNMGAG 236 (573)
Q Consensus 194 ------------------~~~li~Ep~AAal~y~~~~~~~~-------------~------~~~~~~~~~~vlV~D~Ggg 236 (573)
+..=-+|.||.=+-|.+..-..+ . +.-...+.-+|.-+|+|||
T Consensus 497 ~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASIDIGGG 576 (1002)
T PF07520_consen 497 DDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASIDIGGG 576 (1002)
T ss_pred CCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEEecCCC
Confidence 11223666765544443221000 0 0011233556889999999
Q ss_pred eeEEEEEEEe----CC-eEEEE----EeeccccchHHHHHHHH-HHHHHhhhhh----------------cCCCCccC-H
Q 008233 237 YCDVTVSATA----GG-VSQIK----ALSGSAIGGEDLLQNMM-RHLMPNSESL----------------FSSYGMNE-I 289 (573)
Q Consensus 237 T~Dvsv~~~~----~~-~~~v~----~~~g~~lGG~~iD~~l~-~~l~~~~~~~----------------~~~~~~~~-~ 289 (573)
|||+.|-.+. .| ...+. -..|-.+.|+||=..++ .++...+... +|.+-... .
T Consensus 577 TTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~dg~~~~~ 656 (1002)
T PF07520_consen 577 TTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGDGQSDQD 656 (1002)
T ss_pred cceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCcchhHHH
Confidence 9999998876 22 23322 23455588888887776 4444333322 12110000 0
Q ss_pred H-------------HHHHHHHHHHHhhhhcCCCceEEEEEE-e---------------------------cCCeeEEEEE
Q 008233 290 K-------------SMALLRVATQDAIHKLSSETSVQINVD-L---------------------------GNGLKVSKNV 328 (573)
Q Consensus 290 ~-------------~~~~L~~~~e~~K~~LS~~~~~~i~i~-l---------------------------~~g~d~~~~i 328 (573)
+ ...+++.++|+.-.. +........+. + ++=.++.+.|
T Consensus 657 ~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdildv~l~i 735 (1002)
T PF07520_consen 657 RVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILDVPLEI 735 (1002)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceecceEEE
Confidence 0 112234445443210 00011111110 0 1113467899
Q ss_pred cHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCC--ccc-------------
Q 008233 329 TREEFEEVNQ---KVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKK--VEL------------- 390 (573)
Q Consensus 329 tr~~fe~l~~---~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~--~~i------------- 390 (573)
+.+++...+- -.+.+.+..+-+++...+ -|.++|+|--|++|.||..+++..|- .++
T Consensus 736 ~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~tg~WYP 810 (1002)
T PF07520_consen 736 DLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRTGNWYP 810 (1002)
T ss_pred cHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeeeccccc
Confidence 9999998774 556666666666666655 45799999999999999999998741 111
Q ss_pred ----cCCCCCccceehhHHHHhHHhc
Q 008233 391 ----YEGINPLEAAVSGAALEGAVTS 412 (573)
Q Consensus 391 ----~~~~~p~~aVA~GAa~~a~~~~ 412 (573)
.+-.||...||.||.+.+....
T Consensus 811 F~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 811 FNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred CCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 2445899999999998876544
No 51
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.47 E-value=8.1e-05 Score=73.30 Aligned_cols=161 Identities=19% Similarity=0.178 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeec
Q 008233 178 FQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG 257 (573)
Q Consensus 178 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g 257 (573)
..-....+|++.|||+...+=-|.-|.-=+|..-..... + ....-+++|+|+|+..+.+.++.-.. .+.+.-
T Consensus 149 E~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~-~---~~a~~~vav~~Igat~s~l~vi~~gk----~ly~r~ 220 (354)
T COG4972 149 EVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFG-P---EEAAMKVAVFDIGATSSELLVIQDGK----ILYTRE 220 (354)
T ss_pred hhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhC-C---chhhhhheeeeecccceEEEEEECCe----eeeEee
Confidence 334566789999999997777777777666653222211 0 00123378999999999999887553 344444
Q ss_pred cccchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEEecCCeeEEEEEcHHHHHHHH
Q 008233 258 SAIGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVDLGNGLKVSKNVTREEFEEVN 337 (573)
Q Consensus 258 ~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~l~~g~d~~~~itr~~fe~l~ 337 (573)
-++||+.+..++.+.. +.+. ..++.+|.....-. +--.+..
T Consensus 221 ~~~g~~Qlt~~i~r~~--------~L~~-----------~~a~~~k~~~~~P~--------------------~y~~~vl 261 (354)
T COG4972 221 VPVGTDQLTQEIQRAY--------SLTE-----------EKAEEIKRGGTLPT--------------------DYGSEVL 261 (354)
T ss_pred ccCcHHHHHHHHHHHh--------CCCh-----------hHhHHHHhCCCCCC--------------------chhHHHH
Confidence 5599999998876533 2221 33555555433222 1113445
Q ss_pred HHHHHHHHHHHHHHHHH--cCCCcCCCCeEEEEcCCcCcHHHHHHHHhHc
Q 008233 338 QKVFEKCGSLITQCLHD--AKVEIEDLNDVILVGGCSYIPKVRNLVQSTC 385 (573)
Q Consensus 338 ~~~~~~~~~~i~~~l~~--~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f 385 (573)
.++++.+.+.|.+.|+- +.-...+||+++|.||++.+-.+.+.+.+..
T Consensus 262 ~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 262 RPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 55555555555555553 1223457999999999999999999999998
No 52
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.47 E-value=7.3e-06 Score=80.70 Aligned_cols=172 Identities=15% Similarity=0.181 Sum_probs=103.0
Q ss_pred eeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cchHHHHHHHHHHHH
Q 008233 196 RLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNMMRHLM 274 (573)
Q Consensus 196 ~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lGG~~iD~~l~~~l~ 274 (573)
..++|-+|-+..-..-.+ +.=.|+|+||..+-+..++ ++.+.-....... .|+..|.+.+++.+-
T Consensus 73 ~~~~ei~~~~~g~~~~~~------------~~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~ 138 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP------------EARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLG 138 (248)
T ss_pred CceEEhhHHHHHHHHHCC------------CCCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcC
Confidence 367888887664433332 2225999999988887777 4543222233344 788888888776653
Q ss_pred HhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE--ecCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Q 008233 275 PNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD--LGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCL 352 (573)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~--l~~g~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l 352 (573)
-.+ ..+..+ +.+.+....-+..+.+..+ +... +.-..+ .++++..+++.+...+.+.+
T Consensus 139 ~~~------------~e~~~~---~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~---~~di~~~~~~~va~~i~~~~ 198 (248)
T TIGR00241 139 VSV------------EELGSL---AEKADRKAKISSMCTVFAESELISL--LAAGVK---KEDILAGVYESIAERVAEML 198 (248)
T ss_pred CCH------------HHHHHH---HhcCCCCCCcCCEeEEEechhHHHH--HHCCCC---HHHHHHHHHHHHHHHHHHHH
Confidence 111 111111 1111111111222333222 1110 000122 24566666666666666666
Q ss_pred HHcCCCcCCCC-eEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHH
Q 008233 353 HDAKVEIEDLN-DVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALE 407 (573)
Q Consensus 353 ~~~~~~~~~i~-~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~ 407 (573)
...+ ++ .|+|.||.+++|++.+.+++.+ +.++..+.+|..+.|+|||++
T Consensus 199 ~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 199 QRLK-----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred hhcC-----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHhC
Confidence 5433 44 7999999999999999999999 788888999999999999973
No 53
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.45 E-value=4.6e-05 Score=75.33 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=41.2
Q ss_pred eEEEEcCCcCcHHHHHHHHhHcCCcccc-CCCCCccceehhHHHHhHH
Q 008233 364 DVILVGGCSYIPKVRNLVQSTCKKVELY-EGINPLEAAVSGAALEGAV 410 (573)
Q Consensus 364 ~V~LvGG~s~~p~v~~~l~~~f~~~~i~-~~~~p~~aVA~GAa~~a~~ 410 (573)
.|+|.||.++.|.+++.+++.+ +.++. .+.+|+.+-|+|||++|..
T Consensus 242 ~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 242 GFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 6999999999999999999999 66665 5778999999999999964
No 54
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.30 E-value=5.4e-05 Score=77.82 Aligned_cols=45 Identities=29% Similarity=0.276 Sum_probs=42.3
Q ss_pred eEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhH
Q 008233 364 DVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGA 409 (573)
Q Consensus 364 ~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~ 409 (573)
.|+++||.++.+.+.+.+++.+ +.++..+.+|+.+.|.|||++|.
T Consensus 358 ~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 358 PVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred cEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 5999999999999999999999 78888899999999999999984
No 55
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.24 E-value=0.00027 Score=68.96 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=38.2
Q ss_pred eEEEEcCCcCcHHHHHHHHhHcCCcc----ccCCCCCccceehhHHHHh
Q 008233 364 DVILVGGCSYIPKVRNLVQSTCKKVE----LYEGINPLEAAVSGAALEG 408 (573)
Q Consensus 364 ~V~LvGG~s~~p~v~~~l~~~f~~~~----i~~~~~p~~aVA~GAa~~a 408 (573)
.|+|.||.++.+.+++.|++.+++.. +..+.+|+.+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 59999999999999999999885433 4456788899999999975
No 56
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.21 E-value=0.0003 Score=70.73 Aligned_cols=174 Identities=14% Similarity=0.136 Sum_probs=102.4
Q ss_pred eeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cchHHHHHHHHHH
Q 008233 194 VLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNMMRH 272 (573)
Q Consensus 194 ~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lGG~~iD~~l~~~ 272 (573)
.-..++|-+|=+.+..+-.+ +.=.|+|+||- |.=++++.+|.+.-..-.+-. -|.-.|=+.+++.
T Consensus 209 aD~~~~Ei~ah~kgA~~f~p------------~~dtIiDIGGQ--D~K~i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~ 274 (396)
T COG1924 209 ADKVVVEISAHAKGARYFAP------------DVDTVIDIGGQ--DSKVIKLEDGKVDDFTMNDKCAAGTGRFLEVIARR 274 (396)
T ss_pred CCcceeeeehhHHHHHHhCC------------CCcEEEEecCc--ceeEEEEeCCeeeeeEeccccccccchHHHHHHHH
Confidence 33456677765554333222 11289999995 666667767765544444444 4433333344433
Q ss_pred HHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE------ecCCeeEEEEEcHHHHHHHHHHHHHHHHH
Q 008233 273 LMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD------LGNGLKVSKNVTREEFEEVNQKVFEKCGS 346 (573)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~------l~~g~d~~~~itr~~fe~l~~~~~~~~~~ 346 (573)
| +.++ ..+-+.+++++..-.-+..+.+..+ +..| ...|+++.-+...+..
T Consensus 275 L--------gv~v-------~E~~~~A~~~~~~v~i~S~CaVF~eSevi~~~~~G---------~~~EdI~AGl~~Sv~~ 330 (396)
T COG1924 275 L--------GVDV-------EELGKLALKATPPVKINSRCAVFAESEVISALAEG---------ASPEDILAGLAYSVAE 330 (396)
T ss_pred h--------CCCH-------HHHHHHHhcCCCCcccCCeeEEEehHHHHHHHHcC---------CCHHHHHHHHHHHHHH
Confidence 3 2221 2333445555543333333333222 1122 1235555555555544
Q ss_pred HHHH-HHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHH
Q 008233 347 LITQ-CLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAV 410 (573)
Q Consensus 347 ~i~~-~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ 410 (573)
-+-. +++.-.+.. -|+|+||.+....+.+.+++.+ +.++..+.+|..+-|+|||++|..
T Consensus 331 ~v~~~~~~~~~i~~----~iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 331 NVAEKVIKRVDIEE----PIVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHhhccCCCC----CEEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhh
Confidence 3333 554433322 2999999999999999999999 799999999999999999999864
No 57
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.60 E-value=0.00067 Score=65.35 Aligned_cols=188 Identities=20% Similarity=0.203 Sum_probs=95.2
Q ss_pred HHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccccchHHHHH
Q 008233 188 AMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSAIGGEDLLQ 267 (573)
Q Consensus 188 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~lGG~~iD~ 267 (573)
+..|.++..-=-|+.+|.+....... .+..+.++|+||||||.|++.-.+.... ..-.| .|+-++.
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPG----------t~~PlaIlDmG~GSTDAsii~~~g~v~~-iHlAG---AG~mVTm 171 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPG----------TDKPLAILDMGGGSTDASIINRDGEVTA-IHLAG---AGNMVTM 171 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT------------SSEEEEEE-SSEEEEEEE-TTS-EEE-EEEE----SHHHHHH
T ss_pred HHHCCceEEccccHHHHHhcccCCCC----------CCCCeEEEecCCCcccHHHhCCCCcEEE-EEecC---CchhhHH
Confidence 45688887777899999886554433 2678999999999999999986653322 21121 2333333
Q ss_pred HHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCC-----------ceEEE-------------EEEecCCe-
Q 008233 268 NMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSE-----------TSVQI-------------NVDLGNGL- 322 (573)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~-----------~~~~i-------------~i~l~~g~- 322 (573)
.+.. ++ +++ + +..||.+|+-=-.. .+..+ .+ +.++.
T Consensus 172 lI~s----EL----Gl~----d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi-~~~~~l 232 (332)
T PF08841_consen 172 LINS----EL----GLE----D------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVI-LKEDGL 232 (332)
T ss_dssp HHHH----HC----T-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEE-ECTTEE
T ss_pred HHHH----hh----CCC----C------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEE-ecCCce
Confidence 3222 11 111 0 13355555431100 00000 00 11111
Q ss_pred -eEEEEEcHHHHHHHHHHHHHH-HHHHHHHHHHHcC--CCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCc-------ccc
Q 008233 323 -KVSKNVTREEFEEVNQKVFEK-CGSLITQCLHDAK--VEIEDLNDVILVGGCSYIPKVRNLVQSTCKKV-------ELY 391 (573)
Q Consensus 323 -d~~~~itr~~fe~l~~~~~~~-~~~~i~~~l~~~~--~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~-------~i~ 391 (573)
++...++-+++..+=...=++ +..-.-++|++-. -+..+|+.|+|||||+.=.=|-+++.+.+..- ++.
T Consensus 233 vPi~~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIr 312 (332)
T PF08841_consen 233 VPIPGDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIR 312 (332)
T ss_dssp EEESSTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GG
T ss_pred eecCCCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccc
Confidence 111122333333222221111 1122334454422 23458999999999998777888888877432 344
Q ss_pred CCCCCccceehhHHHHh
Q 008233 392 EGINPLEAAVSGAALEG 408 (573)
Q Consensus 392 ~~~~p~~aVA~GAa~~a 408 (573)
-..-|..|||.|.++-.
T Consensus 313 G~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 313 GVEGPRNAVATGLVLSY 329 (332)
T ss_dssp GTSTTSTHHHHHHHHHH
T ss_pred cccCchHHHHHHHHHhh
Confidence 56679999999998743
No 58
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.57 E-value=0.012 Score=63.00 Aligned_cols=85 Identities=16% Similarity=0.108 Sum_probs=55.2
Q ss_pred EEEEEcHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCC--c----------
Q 008233 324 VSKNVTREEFEEVNQKV---FEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKK--V---------- 388 (573)
Q Consensus 324 ~~~~itr~~fe~l~~~~---~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~--~---------- 388 (573)
+.+.|.-.++++.+-.. +....+.+-+++.- .+-|.++|+|--||+|.+|..++...|- .
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrv 817 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRV 817 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceec
Confidence 45667777776654332 22233333333332 2456799999999999999999987631 1
Q ss_pred -------cccCCCCCccceehhHHHHhHHhcC
Q 008233 389 -------ELYEGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 389 -------~i~~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
+..+-.||...+|.||-+.+..+..
T Consensus 818 g~WYPF~k~grIddPKtTAaVGAMLC~Lsl~~ 849 (1014)
T COG4457 818 GTWYPFRKQGRIDDPKTTAAVGAMLCALSLEL 849 (1014)
T ss_pred cceecccccCcCCCcchHHHHHHHHHHHHhhc
Confidence 1133457899999999998876543
No 59
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=97.54 E-value=0.0018 Score=66.27 Aligned_cols=218 Identities=17% Similarity=0.229 Sum_probs=109.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEE-EEE
Q 008233 165 RNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDV-TVS 243 (573)
Q Consensus 165 ~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dv-sv~ 243 (573)
..+++|-|..+...-|+.|.+..-.. |++-.+.- +..|.+ |+.. ..+=+|+|+|.|-+++ -++
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~-fnvpa~yv-a~qavl-ya~g-------------~ttG~VvD~G~gvt~~vPI~ 163 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFET-FNVPALYV-AIQAVL-YASG-------------RTTGLVVDSGDGVTHVVPIY 163 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhh-cCccHhHH-HHHHHH-HHcC-------------CeeEEEEEcCCCceeeeecc
Confidence 57999999999999998888764322 23322222 223333 4433 3567899999997754 333
Q ss_pred EEeCCeEEEEEeeccc-cchHHHHHHHHHHHHHhhhhhcCCCCcc--CHH----HHHHHHHHHHHhhhhcCC-CceEEEE
Q 008233 244 ATAGGVSQIKALSGSA-IGGEDLLQNMMRHLMPNSESLFSSYGMN--EIK----SMALLRVATQDAIHKLSS-ETSVQIN 315 (573)
Q Consensus 244 ~~~~~~~~v~~~~g~~-lGG~~iD~~l~~~l~~~~~~~~~~~~~~--~~~----~~~~L~~~~e~~K~~LS~-~~~~~i~ 315 (573)
+ | +.+...-... +||+++.+-+...|.++ +..... ... ...++.-.+-.-++++.. +....+.
T Consensus 164 e---G-~~lp~ai~~ldl~G~dlt~~l~~~L~~~-----g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~ 234 (372)
T KOG0676|consen 164 E---G-YALPHAILRLDLAGRDLTDYLLKQLRKR-----GYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLE 234 (372)
T ss_pred c---c-cccchhhheecccchhhHHHHHHHHHhc-----ccccccccHHHHHHHhHhhhcccccccchhhhccccccccc
Confidence 3 2 2222223344 99999999777777661 111111 111 111221111122222221 1111111
Q ss_pred EE--ecCCeeEEEEEcHHHHH---HHHHHHH-----HHHHHHHHHHHHHc--CCCcCCCCeEEEEcCCcCcHHHHHHHHh
Q 008233 316 VD--LGNGLKVSKNVTREEFE---EVNQKVF-----EKCGSLITQCLHDA--KVEIEDLNDVILVGGCSYIPKVRNLVQS 383 (573)
Q Consensus 316 i~--l~~g~d~~~~itr~~fe---~l~~~~~-----~~~~~~i~~~l~~~--~~~~~~i~~V~LvGG~s~~p~v~~~l~~ 383 (573)
.. +.||.- +++.-+.|. -+++|-+ ..+-+.+-+.+-++ .+.+.=...|+|+||++-.|.+.+++.+
T Consensus 235 ~~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~k 312 (372)
T KOG0676|consen 235 SSYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQK 312 (372)
T ss_pred ccccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHH
Confidence 11 344432 555544442 2223211 11222222322222 2222234579999999999999998877
Q ss_pred HcC----C---ccccCCCCCccceehhHHHHhH
Q 008233 384 TCK----K---VELYEGINPLEAAVSGAALEGA 409 (573)
Q Consensus 384 ~f~----~---~~i~~~~~p~~aVA~GAa~~a~ 409 (573)
... + .++..+.+...++=.|+.+.|.
T Consensus 313 El~~l~P~~~~ikv~~pp~r~~s~WlGgSIlas 345 (372)
T KOG0676|consen 313 ELQALAPSTIKIKVIAPPERKYSAWLGGSILAS 345 (372)
T ss_pred HHhhcCCCCcceEEecCcccccceecCceeEee
Confidence 652 1 1233333333456677777764
No 60
>PRK13317 pantothenate kinase; Provisional
Probab=97.50 E-value=0.0026 Score=63.33 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=42.9
Q ss_pred CCCeEEEEc-CCcCcHHHHHHHHhHcC--CccccCCCCCccceehhHHHHhH
Q 008233 361 DLNDVILVG-GCSYIPKVRNLVQSTCK--KVELYEGINPLEAAVSGAALEGA 409 (573)
Q Consensus 361 ~i~~V~LvG-G~s~~p~v~~~l~~~f~--~~~i~~~~~p~~aVA~GAa~~a~ 409 (573)
.++.|+++| |.++.|.+++.+.+.+. +.++..+.+|..+.|.|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 356899999 79999999999998873 56788899999999999999875
No 61
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.40 E-value=0.0041 Score=63.60 Aligned_cols=172 Identities=10% Similarity=0.048 Sum_probs=95.4
Q ss_pred eeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEe-CCeEEEEEeeccc-cchHHHHHHHHHHH
Q 008233 196 RLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATA-GGVSQIKALSGSA-IGGEDLLQNMMRHL 273 (573)
Q Consensus 196 ~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~-~~~~~v~~~~g~~-lGG~~iD~~l~~~l 273 (573)
.+++|-+|-|....+-. ++.=.|+|+||--+- ++++. +|.+.-..-.... -|.-.|=+.+++.|
T Consensus 249 ~vitEItcHA~GA~~l~------------P~vrTIIDIGGQDsK--~I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~L 314 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY------------PGTRTVLDIGGQDTK--GIQIDDHGIVENFQMNDRCAAGCGRYLGYIADEM 314 (432)
T ss_pred ceeeeHHHHHHHHHHHC------------CCCCEEEEeCCCceE--EEEEcCCCcEeeeeecCcccccchHHHHHHHHHc
Confidence 35688888776544332 344478999997655 45654 3433211111222 45444444444433
Q ss_pred HHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEE------ecCCeeEEEEEcHHHHHHHHHHHHHHHHHH
Q 008233 274 MPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVD------LGNGLKVSKNVTREEFEEVNQKVFEKCGSL 347 (573)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~------l~~g~d~~~~itr~~fe~l~~~~~~~~~~~ 347 (573)
+.++ ..|-..+.+++....-+..+.+--+ +..| .++++ ++.-+...+..-
T Consensus 315 --------gi~l-------eEl~~lA~~a~~pv~ISS~CtVFAESEVIslla~G------~~reD---IaAGL~~SIA~R 370 (432)
T TIGR02259 315 --------NMGL-------HELGPLAMKSSKPARINSTCTVFAGAELRDRLALG------DKRED---ILAGLHRAIILR 370 (432)
T ss_pred --------CCCH-------HHHHHHHhcCCCCCCcCCcceEEehHHHHHHHHCC------CCHHH---HHHHHHHHHHHH
Confidence 2221 1222334444444444444444332 1122 33333 333344333333
Q ss_pred HHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcC----CccccCCCCCccceehhHHHHh
Q 008233 348 ITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCK----KVELYEGINPLEAAVSGAALEG 408 (573)
Q Consensus 348 i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~----~~~i~~~~~p~~aVA~GAa~~a 408 (573)
+...+.+.+ .--+.|+|.||.++.+.+.+.|++.+. +.++..+.+|+.+-|+|||++|
T Consensus 371 v~s~l~r~~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 371 AISIISRSG---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred HHHHHhccc---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 333333331 112369999999999999999999994 4667889999999999999975
No 62
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.20 E-value=0.0053 Score=63.74 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=84.7
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHHcCCCC-----CeEEEEeCCCCCHHHH-HHHHHHHHHcCCCeeeeechhHHHHHHHHH
Q 008233 137 RSTTPEEVLAIFLVELRAMAETQLKRPI-----RNVVLTIPVSFSRFQL-TRIERACAMAGLHVLRLMPEPTAVALLYAQ 210 (573)
Q Consensus 137 ~~~~~~~l~~~~L~~l~~~a~~~~~~~~-----~~~ViTVPa~f~~~qr-~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~ 210 (573)
..++..++++.+-+-+.-...+.++.+. -.+|+-||..|..... +++.-.....||.-..++-|..||.+..+.
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 4467777777654433333344554432 4689999999998764 555566778899999999999999875442
Q ss_pred hhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cchHHHHHHHHHHHHH
Q 008233 211 QQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNMMRHLMP 275 (573)
Q Consensus 211 ~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lGG~~iD~~l~~~l~~ 275 (573)
..-.|||+|+-+|.+++++-. +.+..+.-.. .||+||++.|+-++.+
T Consensus 275 ---------------ss~CVVdiGAQkTsIaCVEdG---vs~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 ---------------SSACVVDIGAQKTSIACVEDG---VSLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred ---------------cceeEEEccCcceeEEEeecC---ccccCceEEeccCCchHHHHHHHHHHh
Confidence 356799999999999888732 2223333334 8999999998876653
No 63
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.14 E-value=0.0087 Score=62.74 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=56.0
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCCeeeee---chhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEE
Q 008233 165 RNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLM---PEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVT 241 (573)
Q Consensus 165 ~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~~li---~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvs 241 (573)
-.+.||==+--.++.|..+..-+..||==++.-- .|..-|+-..+..... ......|+=+|+||||+.++
T Consensus 86 GAVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S-------~~~~~~V~NiDIGGGTtN~a 158 (473)
T PF06277_consen 86 GAVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALS-------KEHHTVVANIDIGGGTTNIA 158 (473)
T ss_pred ccEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHh-------hhhCCeEEEEEeCCCceeEE
Confidence 3467776677777888888888888873332221 2333332211111110 11368899999999999999
Q ss_pred EEEEeCCeEEEEEeeccccchHHH
Q 008233 242 VSATAGGVSQIKALSGSAIGGEDL 265 (573)
Q Consensus 242 v~~~~~~~~~v~~~~g~~lGG~~i 265 (573)
+++-. +++++.--++||+-|
T Consensus 159 vf~~G----~v~~T~cl~IGGRLi 178 (473)
T PF06277_consen 159 VFDNG----EVIDTACLDIGGRLI 178 (473)
T ss_pred EEECC----EEEEEEEEeeccEEE
Confidence 99865 456665555888744
No 64
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.71 E-value=0.0024 Score=60.39 Aligned_cols=48 Identities=23% Similarity=0.200 Sum_probs=41.9
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHH
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAV 410 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ 410 (573)
.++.|+++||.++.+.+.+.+.+.+ +.++....+ .++.|.|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 4779999999999999999999999 777765544 89999999999863
No 65
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=96.46 E-value=0.13 Score=50.77 Aligned_cols=105 Identities=16% Similarity=0.279 Sum_probs=58.9
Q ss_pred CCeEEEEeCCC-CCHHHHHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEE
Q 008233 164 IRNVVLTIPVS-FSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTV 242 (573)
Q Consensus 164 ~~~~ViTVPa~-f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv 242 (573)
-.++++|=|.+ |..-|.....-..+.-+++- +..-+.|+..++........ ..+ .....+.+|+|.|-+-|-+.
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~--v~kttaa~lva~~~~~~~ne-~~t-t~~~~c~lVIDsGysfThIi- 167 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDA--VLKTTAAVLVAFTKYVRNNE-DST-TTSSECCLVIDSGYSFTHII- 167 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccce--EeecCHHHhcchhhhccCCc-ccc-ccccceEEEEeCCCceEEEe-
Confidence 35789999854 34445555555556666654 33444444444432211110 000 12356899999998877554
Q ss_pred EEEeCCeEEEEEeeccccchHHHHHHHHHHHH
Q 008233 243 SATAGGVSQIKALSGSAIGGEDLLQNMMRHLM 274 (573)
Q Consensus 243 ~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l~ 274 (573)
-+-++.....+.....+||..++..|.+++.
T Consensus 168 -p~v~g~~~~qaV~RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 168 -PVVKGIPYYQAVKRIDVGGKALTNLLKETIS 198 (400)
T ss_pred -hhhcCcchhhceEEeecchHHHHHHHHHHhh
Confidence 2333332223333444999999999988874
No 66
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=96.34 E-value=0.075 Score=50.78 Aligned_cols=235 Identities=17% Similarity=0.248 Sum_probs=132.1
Q ss_pred HHHHHHHHH-HHcCC--CCCeEEEEeCCCCCHHHHHHHHHH-HHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCC
Q 008233 149 LVELRAMAE-TQLKR--PIRNVVLTIPVSFSRFQLTRIERA-CAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGS 224 (573)
Q Consensus 149 L~~l~~~a~-~~~~~--~~~~~ViTVPa~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~ 224 (573)
+.++++.+- +.++. +-.++.+|-|.--....|+.|.+. .+.-||.-+-+.-. |..--|+...
T Consensus 83 M~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQ--AVLtLYAQGL------------ 148 (389)
T KOG0677|consen 83 MEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQ--AVLTLYAQGL------------ 148 (389)
T ss_pred HHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHH--HHHHHHHhcc------------
Confidence 456666542 12222 234789999998888888888776 46678876554322 3322344332
Q ss_pred ccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhh
Q 008233 225 EKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAI 303 (573)
Q Consensus 225 ~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 303 (573)
-.=+|+|-|.|-+-+.=+-- + +..-.-.+.. +.|+++++-|++++..+= +...-..+ .+..+..|
T Consensus 149 -~tGvVvDSGDGVTHi~PVye--~-~~l~HLtrRldvAGRdiTryLi~LLl~rG---YafN~tAD-------FETVR~iK 214 (389)
T KOG0677|consen 149 -LTGVVVDSGDGVTHIVPVYE--G-FVLPHLTRRLDVAGRDITRYLIKLLLRRG---YAFNHTAD-------FETVREIK 214 (389)
T ss_pred -cceEEEecCCCeeEEeeeec--c-eehhhhhhhccccchhHHHHHHHHHHhhc---cccccccc-------hHHHHHHH
Confidence 23478999999887653321 1 1111112333 899999999999887651 11111111 12233344
Q ss_pred hhcCC-----------CceEEEEEE---ecCCeeEEEEEcHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCcC-
Q 008233 304 HKLSS-----------ETSVQINVD---LGNGLKVSKNVTREEFE---EVNQKVF-----EKCGSLITQCLHDAKVEIE- 360 (573)
Q Consensus 304 ~~LS~-----------~~~~~i~i~---l~~g~d~~~~itr~~fe---~l~~~~~-----~~~~~~i~~~l~~~~~~~~- 360 (573)
+.|+- ..++++-++ +.+|. -+.+--+.|| .+++|-+ .-+.+++-++++.+.++..
T Consensus 215 EKLCYisYd~e~e~kLalETTvLv~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~ 292 (389)
T KOG0677|consen 215 EKLCYISYDLELEQKLALETTVLVESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRS 292 (389)
T ss_pred hhheeEeechhhhhHhhhhheeeeeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHH
Confidence 44421 112334333 55664 3455556664 3455422 1234455566665544322
Q ss_pred -CCCeEEEEcCCcCcHHHHHHHHhHcCC------------------ccccCCCCCccceehhHHHHhHHhcC
Q 008233 361 -DLNDVILVGGCSYIPKVRNLVQSTCKK------------------VELYEGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 361 -~i~~V~LvGG~s~~p~v~~~l~~~f~~------------------~~i~~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
--++|+|.||++--|.+-.+|++.+.. .++..+..-...|-.|.|.+|..+.+
T Consensus 293 ~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 293 ELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 236899999999999988777654411 11222333347888999998887765
No 67
>PRK15027 xylulokinase; Provisional
Probab=95.98 E-value=0.02 Score=62.24 Aligned_cols=81 Identities=15% Similarity=0.111 Sum_probs=58.3
Q ss_pred EcHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHH
Q 008233 328 VTREEFEEV-NQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAAL 406 (573)
Q Consensus 328 itr~~fe~l-~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~ 406 (573)
-+|.+|-.. ++-+.-.+...+ +.+++.+. .++.|+++||.++++...+.+.+.+ +.++....+.+++.|+|||+
T Consensus 356 ~~~~~l~rAvlEgia~~~~~~~-~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~ 430 (484)
T PRK15027 356 HGPNELARAVLEGVGYALADGM-DVVHACGI---KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAAR 430 (484)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHH
Confidence 356666543 333333333333 33444443 4779999999999999999999999 88886666777788999999
Q ss_pred HhHHhcC
Q 008233 407 EGAVTSG 413 (573)
Q Consensus 407 ~a~~~~~ 413 (573)
+|+.-.+
T Consensus 431 lA~~~~G 437 (484)
T PRK15027 431 LAQIAAN 437 (484)
T ss_pred HHHHhcC
Confidence 9986555
No 68
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=95.80 E-value=0.23 Score=52.20 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=39.3
Q ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHH
Q 008233 324 VSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQ 382 (573)
Q Consensus 324 ~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~ 382 (573)
-.+.||..|.+++..- -.-+..-++-.|++++++.++|++|+|.||+++-=-+.+.+.
T Consensus 291 ~~i~itq~DIr~~qlA-KaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 291 DDIYITQKDIREFQLA-KAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp S-EEEEHHHHHHHHHH-HHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCEEEeHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 4789999999876432 223455677888999999999999999999998655666554
No 69
>PLN02669 xylulokinase
Probab=95.76 E-value=0.031 Score=61.66 Aligned_cols=48 Identities=29% Similarity=0.398 Sum_probs=41.4
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHH
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAV 410 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ 410 (573)
.++.|+++||.|+++.+.+.+.+.| +.++.....+ ++.|+|||+.|+.
T Consensus 445 ~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 445 PPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred CCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 4789999999999999999999999 6777655454 6889999999975
No 70
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.70 E-value=0.027 Score=62.12 Aligned_cols=85 Identities=18% Similarity=0.275 Sum_probs=60.4
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHH
Q 008233 327 NVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAAL 406 (573)
Q Consensus 327 ~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~ 406 (573)
.-+|..+..++.-+++-+.=.+..+++...-....++.|.++||.++++...+.+.+.+ +.++....++ ++.++|||+
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~ 486 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYVN-EAVLHGAAM 486 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecChh-HHHHHHHHH
Confidence 33566666666666665555555444432211224779999999999999999999999 7888766554 578999999
Q ss_pred HhHHhcC
Q 008233 407 EGAVTSG 413 (573)
Q Consensus 407 ~a~~~~~ 413 (573)
+|+.-.+
T Consensus 487 lA~~~~G 493 (541)
T TIGR01315 487 LGAKAAG 493 (541)
T ss_pred HHHHhcC
Confidence 9976544
No 71
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=95.46 E-value=0.17 Score=50.21 Aligned_cols=47 Identities=9% Similarity=0.078 Sum_probs=39.5
Q ss_pred CCCCeEEEEcC-CcCcHHHHHHHHhHcC--CccccCCCCCccceehhHHH
Q 008233 360 EDLNDVILVGG-CSYIPKVRNLVQSTCK--KVELYEGINPLEAAVSGAAL 406 (573)
Q Consensus 360 ~~i~~V~LvGG-~s~~p~v~~~l~~~f~--~~~i~~~~~p~~aVA~GAa~ 406 (573)
..++.|+++|| ....|.+++.+...+. +.++..+.|....+|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 35779999999 7789999999987762 46777888999999999986
No 72
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.29 E-value=0.59 Score=50.89 Aligned_cols=79 Identities=14% Similarity=0.242 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHcCCCeeeeechhHHHHHHH-HHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEee
Q 008233 178 FQLTRIERACAMAGLHVLRLMPEPTAVALLY-AQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALS 256 (573)
Q Consensus 178 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y-~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~ 256 (573)
+...++.++-+..|+++ .+|+..+=|.+.| +...... ..+..+|+|+|||+|.+++++-. ++....
T Consensus 92 N~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~--------~~~~~lviDIGGGStEl~~~~~~----~~~~~~ 158 (496)
T PRK11031 92 NADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTG--------GADQRLVVDIGGASTELVTGTGA----QATSLF 158 (496)
T ss_pred CHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccC--------CCCCEEEEEecCCeeeEEEecCC----ceeeee
Confidence 45567777778889998 5555555555444 3333221 13458999999999999987632 223333
Q ss_pred ccccchHHHHHHH
Q 008233 257 GSAIGGEDLLQNM 269 (573)
Q Consensus 257 g~~lGG~~iD~~l 269 (573)
.-++|.-.+.+.+
T Consensus 159 Sl~lG~vrl~e~f 171 (496)
T PRK11031 159 SLSMGCVTWLERY 171 (496)
T ss_pred EEeccchHHHHHh
Confidence 3347777665544
No 73
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.24 E-value=0.069 Score=57.73 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=43.3
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcC
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
.++.|.++||.+++|...+.+.+.| +.++....+ .++.++|||+.|+.-.+
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~-~e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANML-DIPVKVVDD-AETTVAGAAMFGFYGVG 443 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhc-CCeeEeccC-CcchHHHHHHHHHHhcC
Confidence 4678999999999999999999999 788866555 46789999999986554
No 74
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=95.24 E-value=0.12 Score=52.16 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHH
Q 008233 337 NQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAAL 406 (573)
Q Consensus 337 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~ 406 (573)
++-..+++.+.|++.....+..+.+. .++.+||.+ |++...|.+.++-..+..+..+.-+.|.||++
T Consensus 217 ~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 217 VRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 33444455555555544446555432 355567765 68888888888555677777789999999986
No 75
>PRK10854 exopolyphosphatase; Provisional
Probab=95.20 E-value=0.29 Score=53.50 Aligned_cols=59 Identities=10% Similarity=0.276 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCCeeeeechhHHHHHHHH-HhhcccccccCCCCCccEEEEEecCCceeEEEEEEE
Q 008233 178 FQLTRIERACAMAGLHVLRLMPEPTAVALLYA-QQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSAT 245 (573)
Q Consensus 178 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~-~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~ 245 (573)
+...++.++-+..|+++ .+|+..+=|.+.|. ...... ..+..+|+|+|||+|.+++++-
T Consensus 97 N~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~--------~~~~~lvvDIGGGStEl~~~~~ 156 (513)
T PRK10854 97 NATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQP--------EKGRKLVIDIGGGSTELVIGEN 156 (513)
T ss_pred CHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccC--------CCCCeEEEEeCCCeEEEEEecC
Confidence 44566667777789998 56665555555553 333221 1356899999999999999874
No 76
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.03 E-value=0.065 Score=58.23 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=43.7
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcC
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
.++.|.++||.++++.+.+.+.+.| +.++.... ..++.|+|||+.|+.-.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~~-~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVPE-GEEGPALGAAILAAWALG 440 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHh-CCceeecC-CCcchHHHHHHHHHHhcC
Confidence 4789999999999999999999999 77776554 666889999999986555
No 77
>PRK00047 glpK glycerol kinase; Provisional
Probab=94.98 E-value=0.065 Score=58.52 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=43.1
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcC
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
.++.|.++||.++++...+.+.+.| +.++.... ..++.|+|||+.|+.-.+
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADIL-GVPVERPV-VAETTALGAAYLAGLAVG 453 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhh-CCeeEecC-cccchHHHHHHHHhhhcC
Confidence 3678999999999999999999999 78886544 456889999999986554
No 78
>PRK04123 ribulokinase; Provisional
Probab=94.91 E-value=0.072 Score=58.90 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=42.9
Q ss_pred CCCeEEEEcCC-cCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcC
Q 008233 361 DLNDVILVGGC-SYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 361 ~i~~V~LvGG~-s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
.++.|.++||. ++++.+.+.+.+.| +.+|.... ..|+.|+|||+.|+.-.+
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~~-~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVVA-SDQCPALGAAIFAAVAAG 489 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhc-CCceEecC-ccccchHHHHHHHHHHhc
Confidence 46789999999 99999999999999 77775444 467889999999986544
No 79
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=94.83 E-value=0.081 Score=58.30 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=55.3
Q ss_pred EcHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCC-cCcHHHHHHHHhHcCCccccCCCCCccceehhHH
Q 008233 328 VTREEFEEVNQ-KVFEKCGSLITQCLHDAKVEIEDLNDVILVGGC-SYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAA 405 (573)
Q Consensus 328 itr~~fe~l~~-~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~-s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa 405 (573)
-+|.+|-..+- -+.-..... -+.|++.+. .++.|+++||. ++++.+.+.+.+.| +.+|....+ .++.|.|||
T Consensus 405 ~~~~~~~RAvlEgia~~~~~~-l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~GaA 478 (536)
T TIGR01234 405 TDAPLLYRALIEATAFGTRMI-METFTDSGV---PVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGAA 478 (536)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHHH
Confidence 35665544332 333333333 333344443 47899999999 99999999999999 788866655 468899999
Q ss_pred HHhHHhcC
Q 008233 406 LEGAVTSG 413 (573)
Q Consensus 406 ~~a~~~~~ 413 (573)
+.|+.-.+
T Consensus 479 ~lA~~~~G 486 (536)
T TIGR01234 479 IFAAVAAG 486 (536)
T ss_pred HHHHHHcC
Confidence 99986555
No 80
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=94.82 E-value=0.072 Score=58.09 Aligned_cols=79 Identities=14% Similarity=0.210 Sum_probs=54.5
Q ss_pred cHHHHHHH-HHHHHHHHHHHHHHHHHH-cCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHH
Q 008233 329 TREEFEEV-NQKVFEKCGSLITQCLHD-AKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAAL 406 (573)
Q Consensus 329 tr~~fe~l-~~~~~~~~~~~i~~~l~~-~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~ 406 (573)
+|.++-.. ++-+.-.+...++ .|++ .+. .++.|.++||.++++...+.+.+.| +.++... +..++.|+|||+
T Consensus 369 ~~~~l~rAvlEgia~~~~~~~~-~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~-~~~e~~alGaA~ 442 (493)
T TIGR01311 369 TKAHIARAALEAIAFQTRDVLE-AMEKDAGV---EITKLRVDGGMTNNNLLMQFQADIL-GVPVVRP-KVTETTALGAAY 442 (493)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHhcCC---CCceEEEecccccCHHHHHHHHHhc-CCeeEec-CCCcchHHHHHH
Confidence 45555433 3334444444443 3332 232 4789999999999999999999999 7888654 445788999999
Q ss_pred HhHHhcC
Q 008233 407 EGAVTSG 413 (573)
Q Consensus 407 ~a~~~~~ 413 (573)
.|+.-.+
T Consensus 443 ~a~~~~G 449 (493)
T TIGR01311 443 AAGLAVG 449 (493)
T ss_pred HHHhhcC
Confidence 9976554
No 81
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=94.78 E-value=0.081 Score=57.83 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=54.0
Q ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHH
Q 008233 329 TREEFEE-VNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALE 407 (573)
Q Consensus 329 tr~~fe~-l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~ 407 (573)
+|.++-. +++-+.-.+...++..-+..+. .++.|.++||.++++.+.+.+.+.| +.++.... ..++.|+|||+.
T Consensus 376 ~~~~i~rAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~ 450 (504)
T PTZ00294 376 TRAHIVRAALEAIALQTNDVIESMEKDAGI---ELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALL 450 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHH
Confidence 4555443 3333333444444322222243 3678999999999999999999999 78876554 455789999999
Q ss_pred hHHhcC
Q 008233 408 GAVTSG 413 (573)
Q Consensus 408 a~~~~~ 413 (573)
|+.-.+
T Consensus 451 aa~a~G 456 (504)
T PTZ00294 451 AGLAVG 456 (504)
T ss_pred HHhhcC
Confidence 986554
No 82
>PRK10331 L-fuculokinase; Provisional
Probab=94.74 E-value=0.078 Score=57.43 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=54.5
Q ss_pred EcHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHH
Q 008233 328 VTREEFEEV-NQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAAL 406 (573)
Q Consensus 328 itr~~fe~l-~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~ 406 (573)
-+|.++-.. ++.+.-.+...++. |++.+ ...++.|.++||.++++...+.+.+.+ +.++.... ..++.++|||+
T Consensus 358 ~~~~~l~rAvlEgia~~~~~~~~~-l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~GaA~ 432 (470)
T PRK10331 358 TTRGHFYRAALEGLTAQLKRNLQV-LEKIG--HFKASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGAAM 432 (470)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHH-HHHhc--CCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHHHH
Confidence 456655433 33333333333332 33322 224789999999999999999999999 77776554 44688999999
Q ss_pred HhHHhcC
Q 008233 407 EGAVTSG 413 (573)
Q Consensus 407 ~a~~~~~ 413 (573)
.|+.-.+
T Consensus 433 la~~~~G 439 (470)
T PRK10331 433 FGWYGVG 439 (470)
T ss_pred HHHHhcC
Confidence 9986554
No 83
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=94.73 E-value=0.12 Score=56.46 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=55.8
Q ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHH
Q 008233 329 TREEFEE-VNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALE 407 (573)
Q Consensus 329 tr~~fe~-l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~ 407 (573)
+|.++-. +++.+.-.+...++...+..+. .++.|.++||.++++...+.+.+.+ +.++....++ ++.+.|||+.
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~-e~~a~GaA~l 445 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPESY-ESSCLGACIL 445 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCCC-CcchHHHHHH
Confidence 4454443 3344444444444444343332 4789999999999999999999999 7888655544 6889999999
Q ss_pred hHHhcC
Q 008233 408 GAVTSG 413 (573)
Q Consensus 408 a~~~~~ 413 (573)
|+.-.+
T Consensus 446 a~~~~G 451 (505)
T TIGR01314 446 GLKALG 451 (505)
T ss_pred HHHhcC
Confidence 986555
No 84
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=94.61 E-value=0.1 Score=51.69 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=25.2
Q ss_pred ccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccccchHH
Q 008233 225 EKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSAIGGED 264 (573)
Q Consensus 225 ~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~lGG~~ 264 (573)
...++=+|+||||+..|++...+ +..+.--++||+-
T Consensus 144 ~t~v~NlDIGGGTtN~slFD~Gk----v~dTaCLdiGGRL 179 (473)
T COG4819 144 LTRVLNLDIGGGTTNYSLFDAGK----VSDTACLDIGGRL 179 (473)
T ss_pred ceEEEEEeccCCccceeeecccc----cccceeeecCcEE
Confidence 67899999999999999987542 3333333366653
No 85
>PLN02295 glycerol kinase
Probab=94.49 E-value=0.15 Score=55.88 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=43.1
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcC
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
.++.|.++||.++++.+.+.+.+.| +.++.... ..++.|+|||+.|+.-.+
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~~-~~e~~alGaA~~A~~~~G 462 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLL-GSPVVRPA-DIETTALGAAYAAGLAVG 462 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhc-CCceEecC-ccccHHHHHHHHHHhhcC
Confidence 4778999999999999999999999 78885444 457889999999976554
No 86
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=94.33 E-value=0.11 Score=55.39 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCC
Q 008233 337 NQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGI 414 (573)
Q Consensus 337 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~ 414 (573)
++-+..++...|+.+-++.+ ..|+.+.+.||.|+.|.+.+.+.+.+ +.++..+.+.+. ++.|||+.|+..++.
T Consensus 393 leai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 393 LEAIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhcCC
Confidence 34444444444444433333 46888999999999999999999999 788888888888 999999999877763
No 87
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.19 E-value=0.094 Score=56.53 Aligned_cols=50 Identities=22% Similarity=0.378 Sum_probs=42.5
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcC
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
.++.|.++||.+++++..+.+.+.+ +.++... +.++.|+|||+.|+.-.+
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcC
Confidence 4779999999999999999999999 7777543 367889999999986554
No 88
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=94.17 E-value=0.62 Score=49.70 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcC
Q 008233 347 LITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 347 ~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
.|-+++++.++ .|+.|++.||-.+.|.+.+.+.+.. +.++..+ ..+++++.|+|++|+.-.+
T Consensus 420 ~Iie~~~~~g~---~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAag 481 (544)
T COG1069 420 AIIETFEDQGI---AIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAAG 481 (544)
T ss_pred HHHHHHHHcCC---eeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHhc
Confidence 34455556554 5889999999999999999999999 6666555 6788999999999986554
No 89
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.03 E-value=0.14 Score=56.25 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=43.3
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcC
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
.++.|.++||.++++...+.+.+.+ +.++....++ ++.++|||+.|+.-.+
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVVK-EATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEeccc-CchHHHHHHHHHHHhC
Confidence 4779999999999999999999999 7888665544 5789999999986554
No 90
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=93.96 E-value=0.47 Score=50.20 Aligned_cols=116 Identities=15% Similarity=0.141 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCC----CCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHHHHHhhccccc
Q 008233 143 EVLAIFLVELRAMAETQLKRP----IRNVVLTIPVSFSRFQLTRIERAC-AMAGLHVLRLMPEPTAVALLYAQQQQQSVH 217 (573)
Q Consensus 143 ~l~~~~L~~l~~~a~~~~~~~----~~~~ViTVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~ 217 (573)
++...+|.|+.. ++|.. ...+++|=+..=...+|+.|-+.. +.-|++-+.+=-. +.++|.++..
T Consensus 95 el~E~ilDY~F~----~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGID---slfS~~hN~~---- 163 (645)
T KOG0681|consen 95 ELMEQILDYIFG----KLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGID---SLFSFYHNYG---- 163 (645)
T ss_pred HHHHHHHHHHHH----hcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechh---hHHHHhhccC----
Confidence 455555555544 33432 234788888776677888887764 4558776543111 1122222211
Q ss_pred ccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccccchHHHHHHHHHHHHH
Q 008233 218 ENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSAIGGEDLLQNMMRHLMP 275 (573)
Q Consensus 218 ~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l~~ 275 (573)
...+..-||+++|..+|-|-.+ -+|..........++||...-.-|.+++..
T Consensus 164 ----~~~~~~~liis~g~~~T~vipv--ldG~~il~~~kRiN~GG~qa~dYL~~Lmq~ 215 (645)
T KOG0681|consen 164 ----KSSNKSGLIISMGHSATHVIPV--LDGRLILKDVKRINWGGYQAGDYLSRLMQL 215 (645)
T ss_pred ----cccCcceEEEecCCCcceeEEE--ecCchhhhcceeeccCcchHHHHHHHHHhc
Confidence 1235578999999998865443 445444444455558887766555555543
No 91
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=93.71 E-value=0.34 Score=48.69 Aligned_cols=77 Identities=10% Similarity=0.251 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCCeeeeechhHHHHHHHH-HhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeecc
Q 008233 180 LTRIERACAMAGLHVLRLMPEPTAVALLYA-QQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGS 258 (573)
Q Consensus 180 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~-~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~ 258 (573)
...+.+.-+..|+++ .+|+..+=|.+.|. ...... ..+..+++|+|||+|.+++++-. ++.....-
T Consensus 74 ~~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~--------~~~~~lviDIGGGStEl~~~~~~----~~~~~~Sl 140 (285)
T PF02541_consen 74 DEFLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLP--------PDKNGLVIDIGGGSTELILFENG----KVVFSQSL 140 (285)
T ss_dssp HHHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHST--------TTSSEEEEEEESSEEEEEEEETT----EEEEEEEE
T ss_pred HHHHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhcc--------ccCCEEEEEECCCceEEEEEECC----eeeEeeee
Confidence 345566666779988 45555555544443 332221 26779999999999999988643 33444445
Q ss_pred ccchHHHHHHH
Q 008233 259 AIGGEDLLQNM 269 (573)
Q Consensus 259 ~lGG~~iD~~l 269 (573)
++|.-.+.+.+
T Consensus 141 ~lG~vrl~e~~ 151 (285)
T PF02541_consen 141 PLGAVRLTERF 151 (285)
T ss_dssp S--HHHHHHHH
T ss_pred ehHHHHHHHHH
Confidence 58887776554
No 92
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=93.69 E-value=0.79 Score=42.84 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCCCeeeeechhHHHHHH
Q 008233 178 FQLTRIERACAMAGLHVLRLMPEPTAVALL 207 (573)
Q Consensus 178 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~ 207 (573)
...+.+.++++.|||++..++.+|-|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 667888999999999999999999998753
No 93
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=93.40 E-value=0.15 Score=55.21 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=42.1
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcC
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
.++.|.++||.++++...+.+.+.+ +.++.... .++.++|||+.|..-.+
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~--~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeCC--hhHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999 77775432 37889999999986555
No 94
>PRK14878 UGMP family protein; Provisional
Probab=93.26 E-value=5.5 Score=40.76 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHc
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTC 385 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f 385 (573)
.++.|+|+||.+...++++.|.+.+
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHH
Confidence 3678999999999999999999976
No 95
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=93.04 E-value=11 Score=38.70 Aligned_cols=92 Identities=12% Similarity=0.008 Sum_probs=51.5
Q ss_pred CCCeEEEEe-CCCCCHHHH--HHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeE
Q 008233 163 PIRNVVLTI-PVSFSRFQL--TRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCD 239 (573)
Q Consensus 163 ~~~~~ViTV-Pa~f~~~qr--~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~D 239 (573)
++..+.+|. |..|+.-.- ..-+.-|...|.+.+. ++--+|=+++-.+..... .+ |++=+=||+|.
T Consensus 70 did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~Plig-V~HlegHi~a~~l~~~~~--------~P---l~LlVSGGhT~ 137 (345)
T PTZ00340 70 DISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPLVG-VNHCVAHIEMGRLVTGAE--------NP---VVLYVSGGNTQ 137 (345)
T ss_pred HCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCCEee-cchHHHHHHHHhhccCCC--------CC---eEEEEeCCceE
Confidence 467778877 665554322 2223334444665543 333333332222211111 13 56667788888
Q ss_pred EEEEEEeCCeEEEEEeeccccchHHHHHH
Q 008233 240 VTVSATAGGVSQIKALSGSAIGGEDLLQN 268 (573)
Q Consensus 240 vsv~~~~~~~~~v~~~~g~~lGG~~iD~~ 268 (573)
+-. ...+.+++++..-|.--|+.||+.
T Consensus 138 l~~--~~~~~~~ilG~T~Dda~Gea~DKv 164 (345)
T PTZ00340 138 VIA--YSEHRYRIFGETIDIAVGNCLDRF 164 (345)
T ss_pred EEE--ecCCeEEEEEeecccchhHHHHHH
Confidence 765 445779999998888778888853
No 96
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.95 E-value=1.3 Score=47.85 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEEE--EeCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccC
Q 008233 143 EVLAIFLVELRAMAETQLKRPIRNVVL--TIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENL 220 (573)
Q Consensus 143 ~l~~~~L~~l~~~a~~~~~~~~~~~Vi--TVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~ 220 (573)
+.....+..|+..++...+..+.++.+ |-=.---.+.-+++..+.+..|+++-.+=-|-+|--.+++......
T Consensus 52 eai~R~~~aL~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~----- 126 (492)
T COG0248 52 EAIERALSALKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLP----- 126 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCC-----
Confidence 344444555555555444445555322 1111111234467888888999998655566666555555555442
Q ss_pred CCCCccEEEEEecCCceeEEEEEEE
Q 008233 221 GSGSEKIAVIFNMGAGYCDVTVSAT 245 (573)
Q Consensus 221 ~~~~~~~vlV~D~GggT~Dvsv~~~ 245 (573)
.....+|+|+|||+|.+++..-
T Consensus 127 ---~~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 127 ---RKGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred ---CCCCEEEEEecCCeEEEEEecC
Confidence 1688999999999999999873
No 97
>PF13941 MutL: MutL protein
Probab=92.92 E-value=0.6 Score=49.62 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=22.9
Q ss_pred CcCCCCeEEEEcC-CcCcHHHHHHHHhHcC
Q 008233 358 EIEDLNDVILVGG-CSYIPKVRNLVQSTCK 386 (573)
Q Consensus 358 ~~~~i~~V~LvGG-~s~~p~v~~~l~~~f~ 386 (573)
+...++.|+-+|| .++.|.-.+.|+..+.
T Consensus 382 DL~~v~~iIgtGGvL~h~~~~~~il~~~~~ 411 (457)
T PF13941_consen 382 DLTRVKYIIGTGGVLTHSPNPEEILKAALD 411 (457)
T ss_pred ccccCCEEEEeCccccCCCCHHHHHHHHhh
Confidence 3347899999999 6788888888887773
No 98
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=92.62 E-value=0.51 Score=51.53 Aligned_cols=80 Identities=16% Similarity=0.047 Sum_probs=49.6
Q ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHH
Q 008233 328 VTREEFEEVNQKVFEKCGSLITQCLHDA-KVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAAL 406 (573)
Q Consensus 328 itr~~fe~l~~~~~~~~~~~i~~~l~~~-~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~ 406 (573)
-+|.+|-..+-+-+--.....-+.|.+. +. .++.|.++||+++.++.++++.+.+ +.++..+.. .|+.+.|+|.
T Consensus 370 ~~~~~l~ravlEgva~~l~~~~~~l~~~~g~---~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~-~e~~a~g~A~ 444 (502)
T COG1070 370 HTRAHLARAVLEGVAFALADGLEALEELGGK---PPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEV-EEAGALGGAA 444 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccEEEEECCcccCHHHHHHHHHHc-CCeeEecCc-ccchHHHHHH
Confidence 4666665544333333333333444443 33 4568999999999999999999999 777765444 4555555555
Q ss_pred HhHHhc
Q 008233 407 EGAVTS 412 (573)
Q Consensus 407 ~a~~~~ 412 (573)
.++.-.
T Consensus 445 ~~~~~~ 450 (502)
T COG1070 445 LAAAAL 450 (502)
T ss_pred HHHHHh
Confidence 544433
No 99
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=92.55 E-value=0.39 Score=49.85 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=45.3
Q ss_pred cCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHH
Q 008233 355 AKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAV 410 (573)
Q Consensus 355 ~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ 410 (573)
.+......+.|+.+||.|+...|-+.|.+.| +..+... +..++.|.|+|+.|+.
T Consensus 436 lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 436 LGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 4555557789999999999999999999999 7777544 7788999999998754
No 100
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=92.02 E-value=0.83 Score=46.28 Aligned_cols=108 Identities=12% Similarity=0.103 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCcc
Q 008233 147 IFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEK 226 (573)
Q Consensus 147 ~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~ 226 (573)
..|+..++.++.+ +..-..++-|------.+....+.+.-+..|+++ .+|+..+=|.+.|.--..... ..
T Consensus 56 ~~l~~f~~~~~~~-~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~--------~~ 125 (300)
T TIGR03706 56 EALKRFAELLRGF-PVDEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLP--------IA 125 (300)
T ss_pred HHHHHHHHHHHhC-CCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCC--------CC
Confidence 4455555555433 3322233333332222344455555556789988 577777777776653332211 12
Q ss_pred EEEEEecCCceeEEEEEEEeCCeEEEEEeeccccchHHHHHH
Q 008233 227 IAVIFNMGAGYCDVTVSATAGGVSQIKALSGSAIGGEDLLQN 268 (573)
Q Consensus 227 ~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~lGG~~iD~~ 268 (573)
..+++|+|||++.++++.-.. +.....-++|...+.+.
T Consensus 126 ~~~v~DiGGGSte~~~~~~~~----~~~~~Sl~lG~vrl~e~ 163 (300)
T TIGR03706 126 DGLVVDIGGGSTELILGKDFE----PGEGVSLPLGCVRLTEQ 163 (300)
T ss_pred CcEEEEecCCeEEEEEecCCC----EeEEEEEccceEEhHHh
Confidence 349999999999999876321 22222333665555544
No 101
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=91.95 E-value=7.3 Score=39.61 Aligned_cols=93 Identities=14% Similarity=0.217 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--cCCCCCeEEEEeCCCCCHH------------HHHHHHHHH-HHcCCCeeeeechhHHHH
Q 008233 141 PEEVLAIFLVELRAMAETQ--LKRPIRNVVLTIPVSFSRF------------QLTRIERAC-AMAGLHVLRLMPEPTAVA 205 (573)
Q Consensus 141 ~~~l~~~~L~~l~~~a~~~--~~~~~~~~ViTVPa~f~~~------------qr~~l~~Aa-~~AGl~~~~li~Ep~AAa 205 (573)
++++...+.+.+.+..++. ...++..+.|++|...+.. +...+.+.. +..|++ +.+.|+..|+|
T Consensus 33 ~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~a 111 (318)
T TIGR00744 33 PETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAA 111 (318)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHH
Confidence 4444444444444433322 1124667888888654321 111233333 334776 57999999999
Q ss_pred HHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEE
Q 008233 206 LLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVS 243 (573)
Q Consensus 206 l~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~ 243 (573)
++-....... ..++++++.+|.|- -.+++
T Consensus 112 laE~~~g~~~--------~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 112 LGEYKKGAGK--------GARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHhcccC--------CCCcEEEEEeCCcc-EEEEE
Confidence 8765543221 25788888898775 45544
No 102
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=91.95 E-value=5.3 Score=40.55 Aligned_cols=25 Identities=28% Similarity=0.687 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHc
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTC 385 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f 385 (573)
.++.|+|.||.+...++++.|.+.+
T Consensus 258 g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 258 GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999887
No 103
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=91.63 E-value=0.51 Score=46.96 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHc----CCccccCCCCCccceehhHHHHh
Q 008233 335 EVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTC----KKVELYEGINPLEAAVSGAALEG 408 (573)
Q Consensus 335 ~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f----~~~~i~~~~~p~~aVA~GAa~~a 408 (573)
++++...+.+.+.+..++.+...... .|+|.||..+...+++.+++.+ +..++..+..|....|.|||++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 44555555666666666666543322 2999999999977777774444 34445567789999999999986
No 104
>PLN02666 5-oxoprolinase
Probab=91.43 E-value=2.4 Score=51.07 Aligned_cols=78 Identities=17% Similarity=0.080 Sum_probs=49.7
Q ss_pred EcHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHH
Q 008233 328 VTREEFEEVNQKVF-EKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAAL 406 (573)
Q Consensus 328 itr~~fe~l~~~~~-~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~ 406 (573)
++-++...-+..+. ....+.|..+....+.++.+. .++..||.+ |...-.|.+.++-.+++.+.+|.-..|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 44455544443333 344445555555667766542 344455554 68888899999556688888999999999886
Q ss_pred Hh
Q 008233 407 EG 408 (573)
Q Consensus 407 ~a 408 (573)
--
T Consensus 531 ad 532 (1275)
T PLN02666 531 AD 532 (1275)
T ss_pred hh
Confidence 43
No 105
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=2.4 Score=40.15 Aligned_cols=75 Identities=15% Similarity=0.299 Sum_probs=48.8
Q ss_pred EcHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCcc-ccCCCCCccceehhHH
Q 008233 328 VTREEFE-EVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVE-LYEGINPLEAAVSGAA 405 (573)
Q Consensus 328 itr~~fe-~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~-i~~~~~p~~aVA~GAa 405 (573)
.|.+++- ++-+-+|.-+.+.-++++..++ -+.|++|||-...-.+|+++.....+.. ....-|-..++-.|+-
T Consensus 225 ~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~M 299 (336)
T KOG2708|consen 225 VTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGVM 299 (336)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCchH
Confidence 4444442 3334456666666677776654 2479999999999999999988873221 2234466677777776
Q ss_pred HH
Q 008233 406 LE 407 (573)
Q Consensus 406 ~~ 407 (573)
+.
T Consensus 300 IA 301 (336)
T KOG2708|consen 300 IA 301 (336)
T ss_pred HH
Confidence 53
No 106
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=90.48 E-value=4.9 Score=40.89 Aligned_cols=53 Identities=26% Similarity=0.413 Sum_probs=38.1
Q ss_pred CCCCeEEEEcCCcCcHHHHHHHHhHcCC---ccccCCCCC----ccceehhHHHHhHHhcC
Q 008233 360 EDLNDVILVGGCSYIPKVRNLVQSTCKK---VELYEGINP----LEAAVSGAALEGAVTSG 413 (573)
Q Consensus 360 ~~i~~V~LvGG~s~~p~v~~~l~~~f~~---~~i~~~~~p----~~aVA~GAa~~a~~~~~ 413 (573)
.+.+.|+|.|-.+++|-+++.+++.|.. .++. .+.+ ....|.|||+.|.-+.+
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~glaG 318 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANGLAG 318 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhhhhc
Confidence 4677899999999999998888877732 1221 2222 23488999999987766
No 107
>PRK09604 UGMP family protein; Validated
Probab=90.15 E-value=18 Score=37.18 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=37.5
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcC--CccccCCC---CCccceehhHHHHhHHhcC
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCK--KVELYEGI---NPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~--~~~i~~~~---~p~~aVA~GAa~~a~~~~~ 413 (573)
+++.|+|.||.+...++++.|.+... +.++..+. --|.++++|+|=+-....+
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 46789999999999999999999873 23443332 3467888888854443333
No 108
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=90.08 E-value=3.2 Score=40.06 Aligned_cols=72 Identities=13% Similarity=0.205 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCCCCeEEEEeCCCCCHH-HHHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccE
Q 008233 149 LVELRAMAETQLKRPIRNVVLTIPVSFSRF-QLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKI 227 (573)
Q Consensus 149 L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~-qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~ 227 (573)
..++++.++..++.++ .++++-..|... ..+..++.| ||- |........ ....+.
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vA----------------AaN-W~Ata~~~~-----e~~~ds 131 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVA----------------AAN-WVATARFLA-----EEIKDS 131 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHH----------------Hhh-hHHHHHHHH-----HhcCCc
Confidence 4456666776666544 888998888763 222222221 211 211111000 012677
Q ss_pred EEEEecCCceeEEEEEE
Q 008233 228 AVIFNMGAGYCDVTVSA 244 (573)
Q Consensus 228 vlV~D~GggT~Dvsv~~ 244 (573)
.+++|+|..|+|+-=+.
T Consensus 132 ci~VD~GSTTtDIIPi~ 148 (330)
T COG1548 132 CILVDMGSTTTDIIPIK 148 (330)
T ss_pred eEEEecCCcccceEeec
Confidence 89999999999986554
No 109
>PTZ00297 pantothenate kinase; Provisional
Probab=90.04 E-value=10 Score=46.63 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=37.8
Q ss_pred cCCCCeEEEEcC-CcCcHHHHHHHHhHc-----CCccccCCCCCccceehhHHHHh
Q 008233 359 IEDLNDVILVGG-CSYIPKVRNLVQSTC-----KKVELYEGINPLEAAVSGAALEG 408 (573)
Q Consensus 359 ~~~i~~V~LvGG-~s~~p~v~~~l~~~f-----~~~~i~~~~~p~~aVA~GAa~~a 408 (573)
..+++.|+++|+ ....|..++.|.... ++.+.....+....-|.||++..
T Consensus 1389 ~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1389 VQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATLD 1444 (1452)
T ss_pred HcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhcC
Confidence 346889999999 566899998887654 34566666677788999999853
No 110
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=89.04 E-value=0.36 Score=51.04 Aligned_cols=67 Identities=19% Similarity=0.368 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCCcC--CCCeEEEEcCCcCcHHHHHHHHhHcC-------CccccCCCCCccceehhHHHHhHH
Q 008233 344 CGSLITQCLHDAKVEIE--DLNDVILVGGCSYIPKVRNLVQSTCK-------KVELYEGINPLEAAVSGAALEGAV 410 (573)
Q Consensus 344 ~~~~i~~~l~~~~~~~~--~i~~V~LvGG~s~~p~v~~~l~~~f~-------~~~i~~~~~p~~aVA~GAa~~a~~ 410 (573)
+.+++..+|.+.-.+-. -+..|+|+||+|.+|.+.++|+..+- ...|....||-..+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 34444555544321111 27799999999999999999988762 234667788988888999999874
No 111
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=87.89 E-value=1.8 Score=44.88 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccC----CCCCccceehhHHHHhHHh
Q 008233 336 VNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYE----GINPLEAAVSGAALEGAVT 411 (573)
Q Consensus 336 l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~----~~~p~~aVA~GAa~~a~~~ 411 (573)
++.-+.+-+...|.+.+++... +++.|+++||+++.|+|.+.|++.+++.++.. .++|+.-=|.+-|++|...
T Consensus 262 ~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~~~ 338 (364)
T PF03702_consen 262 ILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAYRR 338 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3333444444455555555432 36799999999999999999999997755532 3456655566667777654
No 112
>PRK09698 D-allose kinase; Provisional
Probab=86.48 E-value=38 Score=34.02 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCcCc-----HHHHHHHHhHcC------CccccCCCCCccceehhHHHHhH
Q 008233 361 DLNDVILVGGCSYI-----PKVRNLVQSTCK------KVELYEGINPLEAAVSGAALEGA 409 (573)
Q Consensus 361 ~i~~V~LvGG~s~~-----p~v~~~l~~~f~------~~~i~~~~~p~~aVA~GAa~~a~ 409 (573)
+.+.|+|-||.++. +.+++.+++... ..++......+.+.++|||..+.
T Consensus 236 dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 236 DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 45678888877664 345666666441 12344455567889999998875
No 113
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=86.34 E-value=6.6 Score=39.89 Aligned_cols=52 Identities=17% Similarity=0.450 Sum_probs=37.0
Q ss_pred cHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHc
Q 008233 329 TREEFEEVNQK----VFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTC 385 (573)
Q Consensus 329 tr~~fe~l~~~----~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f 385 (573)
..++.++++.. .++-+.+..+++|+..+ .+.++++||-+....+|+++++..
T Consensus 230 ~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 230 NEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 34445555543 45555556666666654 457999999999999999999876
No 114
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=84.41 E-value=4.6 Score=41.81 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=44.7
Q ss_pred eCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHH--HHHHHHhhcccc
Q 008233 139 TTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAV--ALLYAQQQQQSV 216 (573)
Q Consensus 139 ~~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AA--al~y~~~~~~~~ 216 (573)
..+.+-+..+|..++++.++...-.+..-.|+|=. | .+|-.-| .+.|....-..
T Consensus 154 lL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~-----------------G------tdEGv~aWiTiN~Llg~L~~- 209 (453)
T KOG1385|consen 154 LLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMD-----------------G------TDEGVYAWITINYLLGTLGA- 209 (453)
T ss_pred cCChhHHHHHHHHHHHHHhccCCccccCCceeecc-----------------C------cccceeeeeehhhhhcccCC-
Confidence 77888899999999988874433232222233311 1 1111111 12344433221
Q ss_pred cccCCCCCccEEEEEecCCceeEEEEEE
Q 008233 217 HENLGSGSEKIAVIFNMGAGYCDVTVSA 244 (573)
Q Consensus 217 ~~~~~~~~~~~vlV~D~GggT~Dvsv~~ 244 (573)
.....+-|+|+|||+|.++..-
T Consensus 210 ------~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 210 ------PGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred ------CCCCceEEEEcCCceEEEEEec
Confidence 1257899999999999999765
No 115
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=83.86 E-value=5.4 Score=39.74 Aligned_cols=174 Identities=16% Similarity=0.132 Sum_probs=93.4
Q ss_pred echhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEEeCCeEE--EEEeeccc--cchHHHHHHHHHHH
Q 008233 198 MPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQ--IKALSGSA--IGGEDLLQNMMRHL 273 (573)
Q Consensus 198 i~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~--v~~~~g~~--lGG~~iD~~l~~~l 273 (573)
+..|+=..++|....... -++++|.|+-.-|..+.|-. +.+- +-++.|-+ ++ -.+|-.++..+
T Consensus 129 ~aSpEKi~iay~a~~~~~---------~~~~ivsDiSSNTVtlaVk~---GKIVggidaciGAPG~lh-GpLDlE~ir~I 195 (326)
T TIGR03281 129 IASPEKVSIAYNAYCLTG---------FKDFIVSDISSNTVTLLIKD---GKIIGGFDACVGAPGVLH-GPLDLEAIRNI 195 (326)
T ss_pred cCCHHHHHHHHHHHHHcC---------CCCEEEEecCCCeEEEEEEC---CEEEccccccccCccccc-CcccHHHHHhc
Confidence 356787888887766442 48899999999998777643 3221 11122322 33 44555555444
Q ss_pred HHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEEecCCeeEEEEEcHHHHHHHHHH---HHHHHHHHHH-
Q 008233 274 MPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVDLGNGLKVSKNVTREEFEEVNQK---VFEKCGSLIT- 349 (573)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~l~~g~d~~~~itr~~fe~l~~~---~~~~~~~~i~- 349 (573)
-.-- .. +.+.+|...-..+. ..+.+ ...+++||.+.+.. ....+..++.
T Consensus 196 d~g~-------~t---------------an~aFs~aGa~kIa-~~~~~----~~~~~eE~~~~~~~~e~~~lA~dal~~~ 248 (326)
T TIGR03281 196 DAGK-------KT---------------ANEAFSHAGAVKIA-CADKG----VENAKEEILNNYNGDEPGRLALDSLAMS 248 (326)
T ss_pred ccCc-------cc---------------HHHHHhhcCeeEEe-ccccc----ccCCHHHHHHHhccChhHHHHHHHHHHH
Confidence 2210 00 01112222211111 01221 35677777765522 2112222222
Q ss_pred --HHHHHcCCCcCCCCeEEEEcC--CcCcH-HHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCC
Q 008233 350 --QCLHDAKVEIEDLNDVILVGG--CSYIP-KVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGI 414 (573)
Q Consensus 350 --~~l~~~~~~~~~i~~V~LvGG--~s~~p-~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~ 414 (573)
.-+..........+.|+|.|- +++.| .+++.|++++ +.++.. +.. +..|.|+|+.|.-+.+.
T Consensus 249 vameIasLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L-~~~V~~-L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 249 VAMEIASLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVL-SCKVLV-LDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred HHHHHHhheeccCCCCcEEEeCcchhccCchHHHHHHHHHh-CCCeEE-ecc-hhhhhhHHHHHHHHhCC
Confidence 222211111123348999987 99999 9999999999 444322 222 88999999999877663
No 116
>PLN02920 pantothenate kinase 1
Probab=81.79 E-value=7.9 Score=40.22 Aligned_cols=49 Identities=8% Similarity=-0.143 Sum_probs=37.5
Q ss_pred CCCCeEEEEcCCcCcH-HHHHHHHhH---c--CCccccCCCCCccceehhHHHHh
Q 008233 360 EDLNDVILVGGCSYIP-KVRNLVQST---C--KKVELYEGINPLEAAVSGAALEG 408 (573)
Q Consensus 360 ~~i~~V~LvGG~s~~p-~v~~~l~~~---f--~~~~i~~~~~p~~aVA~GAa~~a 408 (573)
.+++.|+++|.+.+.+ ..++.|.-. + ++.+.....+....-|.||.+..
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 4688999999999998 777755432 2 34666777888899999999754
No 117
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=81.49 E-value=6.3 Score=40.87 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccC----CCCCccceehhHHHHhHHh
Q 008233 342 EKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYE----GINPLEAAVSGAALEGAVT 411 (573)
Q Consensus 342 ~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~----~~~p~~aVA~GAa~~a~~~ 411 (573)
+-+...|.+.+.... ...+.|+++||+++.|+|.++|++.++ .++.. ..+++.-=|..-|++|...
T Consensus 270 ~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~~ 339 (365)
T PRK09585 270 ELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVRT 339 (365)
T ss_pred HHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHHH
Confidence 333444455554432 234689999999999999999999996 34332 2556655566667777543
No 118
>PRK00976 hypothetical protein; Provisional
Probab=81.11 E-value=7.8 Score=39.31 Aligned_cols=50 Identities=18% Similarity=0.142 Sum_probs=38.7
Q ss_pred CCCeEEEEcCCcCcH--HHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcC
Q 008233 361 DLNDVILVGGCSYIP--KVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p--~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
+.+.|+|-||.++.+ .+.+.+++.+ ... ...-..++.++|||+.|....+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l-~~~--~a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELL-DKK--VLVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHh-ccc--ccccCCchHHHHHHHHHHHHhC
Confidence 466899999999998 8889998888 332 2333458999999999987654
No 119
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=80.99 E-value=41 Score=33.27 Aligned_cols=50 Identities=24% Similarity=0.376 Sum_probs=37.7
Q ss_pred CcCCCCeEEEEcCCcCcHHHHHHHHhHcC---CccccCCCCCccceehhHHHH
Q 008233 358 EIEDLNDVILVGGCSYIPKVRNLVQSTCK---KVELYEGINPLEAAVSGAALE 407 (573)
Q Consensus 358 ~~~~i~~V~LvGG~s~~p~v~~~l~~~f~---~~~i~~~~~p~~aVA~GAa~~ 407 (573)
-+.++|.|+|+||.++...+-++|.++.. ...+....|-.+|-|.||...
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lRV 345 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALRV 345 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHHH
Confidence 45679999999999999999999988762 223333455667899998753
No 120
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=80.10 E-value=5.2 Score=42.30 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=57.6
Q ss_pred EcHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHH
Q 008233 328 VTREEFEE-VNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAAL 406 (573)
Q Consensus 328 itr~~fe~-l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~ 406 (573)
.++++|-. .++.+.-+..++++..=++.+. +++.+-+=||.++..++.+...+.+ +.+|.++.+ .|.-|+|||+
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~~-~EtTAlGaA~ 445 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADIL-GVPVERPVV-LETTALGAAY 445 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHh-CCeeecccc-chhhHHHHHH
Confidence 34555543 2334444555555544444444 5778899999999999999999999 788877654 5678999999
Q ss_pred HhHHhcC
Q 008233 407 EGAVTSG 413 (573)
Q Consensus 407 ~a~~~~~ 413 (573)
.|..-.+
T Consensus 446 lAGla~G 452 (499)
T COG0554 446 LAGLAVG 452 (499)
T ss_pred HHhhhhC
Confidence 9987666
No 121
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=79.73 E-value=6.9 Score=40.88 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=20.6
Q ss_pred CCCeEEEEEcCccceEEEEEe---CCcEEE
Q 008233 24 FPEIAIGIDIGTSQCSIAFWN---GSEVEL 50 (573)
Q Consensus 24 ~~~~vvGIDfGTt~s~va~~~---~~~~~i 50 (573)
....+++||||.||.++|... +|++++
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~ 102 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDI 102 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCccc
Confidence 345899999999999999872 445543
No 122
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=79.11 E-value=2.9 Score=47.01 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=30.7
Q ss_pred eeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEE
Q 008233 194 VLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSA 244 (573)
Q Consensus 194 ~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~ 244 (573)
+..+.+=|.|..+...+-.... .+ +++++|+||.|||++++.
T Consensus 255 v~tI~SGPAagvvGAa~ltg~~--------~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 255 VETILSGPAAGVVGAAYLTGLK--------AG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeeEeeccHHHHHHHHHhcccc--------cC-CEEEEEcCCcceeeeeee
Confidence 4557788888777655542221 13 699999999999999987
No 123
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=78.67 E-value=50 Score=33.98 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=43.5
Q ss_pred CcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccC----CCCCccceehhHHHHhHHh
Q 008233 358 EIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYE----GINPLEAAVSGAALEGAVT 411 (573)
Q Consensus 358 ~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~----~~~p~~aVA~GAa~~a~~~ 411 (573)
.....+.++++||..+.|++++.|...+++..|.. .++++..=|.+=|++|...
T Consensus 287 ~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 287 LQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred ccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 34567799999999999999999999997756543 4677777788888888765
No 124
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=78.43 E-value=4.1 Score=34.95 Aligned_cols=48 Identities=13% Similarity=0.352 Sum_probs=28.7
Q ss_pred EEEEecCCceeEEEEEEE-eCCeEEEEEeeccc---cchHHHH--HHHHHHHHH
Q 008233 228 AVIFNMGAGYCDVTVSAT-AGGVSQIKALSGSA---IGGEDLL--QNMMRHLMP 275 (573)
Q Consensus 228 vlV~D~GggT~Dvsv~~~-~~~~~~v~~~~g~~---lGG~~iD--~~l~~~l~~ 275 (573)
++++|+|++++.+.+++. ..+.++++.....+ +=|..|. +.+.+-+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~ 54 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKI 54 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT-
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHH
Confidence 689999999999999998 44455666544333 2266676 666555543
No 125
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=78.23 E-value=90 Score=32.45 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=57.9
Q ss_pred EEEEcHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCcCCCCe-EEEEcCCcCcHHHHHHHHhHcCCccccC-CCCCcccee
Q 008233 325 SKNVTREEFEEVNQKVFEKCG-SLITQCLHDAKVEIEDLND-VILVGGCSYIPKVRNLVQSTCKKVELYE-GINPLEAAV 401 (573)
Q Consensus 325 ~~~itr~~fe~l~~~~~~~~~-~~i~~~l~~~~~~~~~i~~-V~LvGG~s~~p~v~~~l~~~f~~~~i~~-~~~p~~aVA 401 (573)
...-.+.++...++..++++. +.++.++++.+ ++. +.|.||....-..-..|.+..+-.++.. +.--|.-+|
T Consensus 130 ~~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~a 204 (360)
T PF02543_consen 130 PLTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLA 204 (360)
T ss_dssp EEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchH
Confidence 345677788877777776654 45666666665 345 9999999998888888888854455544 455678899
Q ss_pred hhHHHHhHHhcC
Q 008233 402 SGAALEGAVTSG 413 (573)
Q Consensus 402 ~GAa~~a~~~~~ 413 (573)
+|||+++....+
T Consensus 205 iGaA~~~~~~~~ 216 (360)
T PF02543_consen 205 IGAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 999999985543
No 126
>PLN02362 hexokinase
Probab=78.02 E-value=36 Score=37.02 Aligned_cols=42 Identities=17% Similarity=0.106 Sum_probs=31.3
Q ss_pred EeCCCCCHHHHHHHHHHHHHcCCC--eeeeechhHHHHHHHHHh
Q 008233 170 TIPVSFSRFQLTRIERACAMAGLH--VLRLMPEPTAVALLYAQQ 211 (573)
Q Consensus 170 TVPa~f~~~qr~~l~~Aa~~AGl~--~~~li~Ep~AAal~y~~~ 211 (573)
.++..-...-.+.+.+|.+.-|++ +..+||+.+|.-++.++.
T Consensus 198 ~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~ 241 (509)
T PLN02362 198 AISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYH 241 (509)
T ss_pred ccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcC
Confidence 334444557788999999888875 688999999987765554
No 127
>PRK03011 butyrate kinase; Provisional
Probab=75.29 E-value=4.6 Score=41.90 Aligned_cols=47 Identities=23% Similarity=0.461 Sum_probs=37.3
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcC---CccccCCCCCccceehhHHHH
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCK---KVELYEGINPLEAAVSGAALE 407 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~---~~~i~~~~~p~~aVA~GAa~~ 407 (573)
++|.|+|.||.+..+.+++.|++.+. ...+....+-.+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 57899999999999999999888763 244555566678999998864
No 128
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=75.23 E-value=9.8 Score=28.15 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=29.7
Q ss_pred HHHcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Q 008233 157 ETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHV 194 (573)
Q Consensus 157 ~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~ 194 (573)
+++.... .-.++.|+.++..+|..+.+.|...||..
T Consensus 9 ~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 9 EDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 3444433 67789999999999999999999999865
No 129
>PLN02405 hexokinase
Probab=74.38 E-value=40 Score=36.64 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC--eeeeechhHHHHHHHHHh
Q 008233 172 PVSFSRFQLTRIERACAMAGLH--VLRLMPEPTAVALLYAQQ 211 (573)
Q Consensus 172 Pa~f~~~qr~~l~~Aa~~AGl~--~~~li~Ep~AAal~y~~~ 211 (573)
|..-...-.+.+.+|.+.-|++ +..|||+.++.-++.++.
T Consensus 200 ~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~ 241 (497)
T PLN02405 200 DDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYY 241 (497)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcC
Confidence 3333456778999999888885 588999999987766654
No 130
>PLN02914 hexokinase
Probab=72.91 E-value=48 Score=35.90 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=31.5
Q ss_pred EeCCCCCHHHHHHHHHHHHHcCCC--eeeeechhHHHHHHHHHhh
Q 008233 170 TIPVSFSRFQLTRIERACAMAGLH--VLRLMPEPTAVALLYAQQQ 212 (573)
Q Consensus 170 TVPa~f~~~qr~~l~~Aa~~AGl~--~~~li~Ep~AAal~y~~~~ 212 (573)
.++..-...-.+.+.+|.+.-|++ +..|||..+|..++.++..
T Consensus 198 ~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~ 242 (490)
T PLN02914 198 AVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD 242 (490)
T ss_pred ccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC
Confidence 344444556788999999887764 6889999999877666543
No 131
>PRK00047 glpK glycerol kinase; Provisional
Probab=71.75 E-value=3.8 Score=44.70 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=19.4
Q ss_pred CCCCCeEEEEEcCccceEEEEEe
Q 008233 22 SPFPEIAIGIDIGTSQCSIAFWN 44 (573)
Q Consensus 22 ~~~~~~vvGIDfGTt~s~va~~~ 44 (573)
|.|...++|||+|||++++++++
T Consensus 1 ~~m~~~~lgiD~GTts~Ka~l~d 23 (498)
T PRK00047 1 MMMKKYILALDQGTTSSRAIIFD 23 (498)
T ss_pred CCccCEEEEEecCCCceEEEEEC
Confidence 34556799999999999999984
No 132
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=70.48 E-value=5.3 Score=43.67 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=20.0
Q ss_pred CCCeEEEEEcCccceEEEEEeCC
Q 008233 24 FPEIAIGIDIGTSQCSIAFWNGS 46 (573)
Q Consensus 24 ~~~~vvGIDfGTt~s~va~~~~~ 46 (573)
++..++|||+|||++++.+++.+
T Consensus 2 ~~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 2 MMKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred CccEEEEEEcCCCcEEEEEEeCC
Confidence 56799999999999999998554
No 133
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=69.74 E-value=4.8 Score=32.85 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=16.1
Q ss_pred eEEEEEcCccceEEEEEe
Q 008233 27 IAIGIDIGTSQCSIAFWN 44 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~ 44 (573)
.++|||+|.|++++|+.+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d 19 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVD 19 (99)
T ss_pred cEEEEccCCCeEEEEEEC
Confidence 479999999999999884
No 134
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=69.29 E-value=17 Score=34.50 Aligned_cols=52 Identities=10% Similarity=0.182 Sum_probs=33.8
Q ss_pred ccEEEEEecCCceeEEEEEEEeCC-eEEEEEeec---cc-cchHHHHHHHHHHHHHhhh
Q 008233 225 EKIAVIFNMGAGYCDVTVSATAGG-VSQIKALSG---SA-IGGEDLLQNMMRHLMPNSE 278 (573)
Q Consensus 225 ~~~vlV~D~GggT~Dvsv~~~~~~-~~~v~~~~g---~~-lGG~~iD~~l~~~l~~~~~ 278 (573)
.+.+|++|+||.++-+.++++.++ .+++..... .. .-|.. +.|.+|+.+.+.
T Consensus 62 ~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~~~--~~lFd~ia~~i~ 118 (206)
T PF00349_consen 62 KGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNGSG--EELFDFIADCIA 118 (206)
T ss_dssp EEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTSBH--HHHHHHHHHHHH
T ss_pred CceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcCCc--ccHHHHHHHHHH
Confidence 678999999999999999999876 444332211 11 11222 556677666543
No 135
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=68.99 E-value=5.3 Score=38.92 Aligned_cols=18 Identities=33% Similarity=0.689 Sum_probs=16.4
Q ss_pred eEEEEEcCccceEEEEEe
Q 008233 27 IAIGIDIGTSQCSIAFWN 44 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~ 44 (573)
.++|||+|||++++++++
T Consensus 1 y~lgiDiGTts~K~~l~d 18 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFD 18 (245)
T ss_dssp EEEEEEECSSEEEEEEEE
T ss_pred CEEEEEEcccceEEEEEe
Confidence 479999999999999986
No 136
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=68.69 E-value=5.6 Score=35.00 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=17.9
Q ss_pred CeEEEEEcCccceEEEEEeCC
Q 008233 26 EIAIGIDIGTSQCSIAFWNGS 46 (573)
Q Consensus 26 ~~vvGIDfGTt~s~va~~~~~ 46 (573)
+.++|||+|+..+++|+.+..
T Consensus 1 mriL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETT
T ss_pred CeEEEEEeCCCeEEEEEecCC
Confidence 368999999999999998654
No 137
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=67.32 E-value=5.2 Score=43.94 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=17.4
Q ss_pred CeEEEEEcCccceEEEEEe
Q 008233 26 EIAIGIDIGTSQCSIAFWN 44 (573)
Q Consensus 26 ~~vvGIDfGTt~s~va~~~ 44 (573)
..++|||+|||++++++++
T Consensus 3 ~~~lgID~GTts~Ka~l~d 21 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFD 21 (520)
T ss_pred cEEEEEecCCCceEEEEEC
Confidence 4899999999999999984
No 138
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=67.28 E-value=6.8 Score=44.54 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=36.2
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcC--CccccCCC---CCccceehhHHHHh
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCK--KVELYEGI---NPLEAAVSGAALEG 408 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~--~~~i~~~~---~p~~aVA~GAa~~a 408 (573)
.++.|+|+||.++..++++.|.+.+. +.++..+. --|.+++.|.|++|
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a 710 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAA 710 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998874 23443322 34678888888766
No 139
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=67.07 E-value=21 Score=26.54 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=31.5
Q ss_pred HHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Q 008233 154 AMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHV 194 (573)
Q Consensus 154 ~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~ 194 (573)
+..+++.... ..-.++.|+.++..+|..+.+.|+..||..
T Consensus 6 ~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 6 QIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 3444454432 467789999999999999999999999875
No 140
>PTZ00107 hexokinase; Provisional
Probab=66.15 E-value=1.7e+02 Score=31.66 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC--eeeeechhHHHHHHHHHhh
Q 008233 172 PVSFSRFQLTRIERACAMAGLH--VLRLMPEPTAVALLYAQQQ 212 (573)
Q Consensus 172 Pa~f~~~qr~~l~~Aa~~AGl~--~~~li~Ep~AAal~y~~~~ 212 (573)
|..-...-.+.+.+|.+.-|++ +..++|+.+|.-++.++..
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~ 231 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQK 231 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcC
Confidence 3334456778999999988875 6889999999888777664
No 141
>PLN02596 hexokinase-like
Probab=65.79 E-value=1.3e+02 Score=32.79 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC--eeeeechhHHHHHHHHHhh
Q 008233 172 PVSFSRFQLTRIERACAMAGLH--VLRLMPEPTAVALLYAQQQ 212 (573)
Q Consensus 172 Pa~f~~~qr~~l~~Aa~~AGl~--~~~li~Ep~AAal~y~~~~ 212 (573)
+..-...--+.+.+|.+.-|++ +..++|..+|..++.++..
T Consensus 200 ~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~ 242 (490)
T PLN02596 200 DDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYN 242 (490)
T ss_pred CCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCC
Confidence 3334456667788888877775 6889999999888766653
No 142
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=64.86 E-value=70 Score=32.31 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.5
Q ss_pred CCCCeEEEEEcCccceEEEEEeC
Q 008233 23 PFPEIAIGIDIGTSQCSIAFWNG 45 (573)
Q Consensus 23 ~~~~~vvGIDfGTt~s~va~~~~ 45 (573)
+....++|||+|.|++.+++.+.
T Consensus 3 ~~~~~~lgidIggt~i~~~l~d~ 25 (314)
T COG1940 3 PEAMTVLGIDIGGTKIKVALVDL 25 (314)
T ss_pred ccCcEEEEEEecCCEEEEEEECC
Confidence 45678999999999999998743
No 143
>PRK10331 L-fuculokinase; Provisional
Probab=62.89 E-value=6.9 Score=42.35 Aligned_cols=21 Identities=10% Similarity=0.219 Sum_probs=18.0
Q ss_pred eEEEEEcCccceEEEEEe-CCc
Q 008233 27 IAIGIDIGTSQCSIAFWN-GSE 47 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~-~~~ 47 (573)
.++|||+|||++++++++ +|+
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~ 24 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGK 24 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCc
Confidence 689999999999999984 444
No 144
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=62.84 E-value=8.7 Score=33.94 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.9
Q ss_pred CCeEEEEEcCccceEEEEEeC
Q 008233 25 PEIAIGIDIGTSQCSIAFWNG 45 (573)
Q Consensus 25 ~~~vvGIDfGTt~s~va~~~~ 45 (573)
++.++|||+|+..+++|+.+.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~ 23 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDP 23 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecC
Confidence 345999999999999999754
No 145
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=61.85 E-value=2e+02 Score=29.62 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHcCCC---CCeEEEEeCCCCCHHHHHHHHHHHHHcCC--CeeeeechhHHHHHHHHHhhcccccc
Q 008233 144 VLAIFLVELRAMAETQLKRP---IRNVVLTIPVSFSRFQLTRIERACAMAGL--HVLRLMPEPTAVALLYAQQQQQSVHE 218 (573)
Q Consensus 144 l~~~~L~~l~~~a~~~~~~~---~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl--~~~~li~Ep~AAal~y~~~~~~~~~~ 218 (573)
.-..-+..+.+++-...+.. .+-+.+|+=....-.-+-=++-|-..|+- +.+-=|+--+|=|+.--+..+.-
T Consensus 81 ~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~~v--- 157 (405)
T KOG2707|consen 81 LHRENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDDSV--- 157 (405)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccCCc---
Confidence 33344455555555444433 45577777666655555555555555532 12233455566666544444221
Q ss_pred cCCCCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccccchHHHHHHHHHHHHHhhhhhcCCCCc-cCHHHHHHHHH
Q 008233 219 NLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSAIGGEDLLQNMMRHLMPNSESLFSSYGM-NEIKSMALLRV 297 (573)
Q Consensus 219 ~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l~~~~~~~~~~~~~-~~~~~~~~L~~ 297 (573)
.-.+|.+=+-||.+-+.+.+- -+.++++...-|.-=|+.||+. +++| +.... ++.+. .-.
T Consensus 158 ------~FPFl~lLvSGGH~llvla~~-~~~~~llg~TvDiApGe~lDK~-ar~L--------gl~~~~e~~~~---~g~ 218 (405)
T KOG2707|consen 158 ------RFPFLALLVSGGHTLLVLANG-VGDHELLGQTVDIAPGEALDKC-ARRL--------GLLGHPEDARS---GGK 218 (405)
T ss_pred ------CCceeeEeeeCCceEEEEecc-ccceeeeecccccchHHHHHHH-HHHh--------cCCCCccchhh---hhh
Confidence 345666666777776666542 3456777776666556777743 2222 21111 01111 111
Q ss_pred HHHHhhhhcCCCceEEEEEEecCCeeEE----------------------EEEcHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 008233 298 ATQDAIHKLSSETSVQINVDLGNGLKVS----------------------KNVTREEFEE-VNQKVFEKCGSLITQCLHD 354 (573)
Q Consensus 298 ~~e~~K~~LS~~~~~~i~i~l~~g~d~~----------------------~~itr~~fe~-l~~~~~~~~~~~i~~~l~~ 354 (573)
++|..-..-|......+.+++.+-.+.+ ....+.+|.. +-.-.+..+.+-...+++.
T Consensus 219 aie~la~~~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~ 298 (405)
T KOG2707|consen 219 AIEHLANRASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIKS 298 (405)
T ss_pred HHHHHHhccCccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1221111111111111111121111111 1122333322 1122344444445555555
Q ss_pred cCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCC
Q 008233 355 AKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKK 387 (573)
Q Consensus 355 ~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~ 387 (573)
+.+....+...++.||-++..+|+..|+.....
T Consensus 299 ~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~~ 331 (405)
T KOG2707|consen 299 LLLQPKNVKQLVISGGVASNQYIRGALEKLSAA 331 (405)
T ss_pred hhhcccCCceEEEcCCccchHHHHHHHHHHHHh
Confidence 555566778999999999999999999987643
No 146
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=61.74 E-value=1.6e+02 Score=31.79 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=48.6
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCCC---eeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEEEE
Q 008233 169 LTIPVSFSRFQLTRIERACAMAGLH---VLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVSAT 245 (573)
Q Consensus 169 iTVPa~f~~~qr~~l~~Aa~~AGl~---~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~ 245 (573)
+.++.-....--+.+.+|.+.-|+. +..++|..++.-++..+.. +++++-+=+|.||=-+-+.+.
T Consensus 183 f~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~------------~~~~igvI~GTGtNacY~e~~ 250 (474)
T KOG1369|consen 183 FKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED------------PNCEIGVIFGTGTNACYMEDM 250 (474)
T ss_pred ccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC------------CCcEEEEEECCCccceeeeec
Confidence 3445555566778999999999886 6889999999877655543 567777778988876666665
Q ss_pred e
Q 008233 246 A 246 (573)
Q Consensus 246 ~ 246 (573)
.
T Consensus 251 ~ 251 (474)
T KOG1369|consen 251 R 251 (474)
T ss_pred c
Confidence 4
No 147
>PRK04123 ribulokinase; Provisional
Probab=61.26 E-value=8.5 Score=42.57 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=17.9
Q ss_pred CCeEEEEEcCccceEEEEEe
Q 008233 25 PEIAIGIDIGTSQCSIAFWN 44 (573)
Q Consensus 25 ~~~vvGIDfGTt~s~va~~~ 44 (573)
+..++|||+|||.+++++++
T Consensus 2 ~~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 2 MAYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred CcEEEEEecCCCceEEEEEE
Confidence 35799999999999999986
No 148
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=61.13 E-value=14 Score=31.67 Aligned_cols=57 Identities=25% Similarity=0.199 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC---CCeee---------eechh-HHHHHH
Q 008233 147 IFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAG---LHVLR---------LMPEP-TAVALL 207 (573)
Q Consensus 147 ~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AG---l~~~~---------li~Ep-~AAal~ 207 (573)
.-|+...+.||+..+.++..+.+++ ...+.+.+.++++.++ +.+.. ++..| -|+|++
T Consensus 50 ~~i~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 50 KAIKIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHT--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 3344555556665555555566655 4455566677777776 66666 77888 777764
No 149
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=60.86 E-value=7.3 Score=38.16 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=16.6
Q ss_pred EEEEEcCccceEEEEEeCC
Q 008233 28 AIGIDIGTSQCSIAFWNGS 46 (573)
Q Consensus 28 vvGIDfGTt~s~va~~~~~ 46 (573)
++|||+|||++++++++++
T Consensus 2 ~lGIDiGtts~K~vl~d~g 20 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLMEDG 20 (248)
T ss_pred EEEEEcChhheEEEEEcCC
Confidence 6899999999999998643
No 150
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=60.57 E-value=8 Score=42.26 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=17.2
Q ss_pred eEEEEEcCccceEEEEEeC
Q 008233 27 IAIGIDIGTSQCSIAFWNG 45 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~~ 45 (573)
.++|||+|||++++++++.
T Consensus 3 ~~lgiDiGTts~Ka~l~d~ 21 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE 21 (504)
T ss_pred EEEEEecCCCceEEEEECC
Confidence 7999999999999999953
No 151
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=60.40 E-value=84 Score=30.75 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=57.3
Q ss_pred CCCCCeEEE--EeCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCcee
Q 008233 161 KRPIRNVVL--TIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYC 238 (573)
Q Consensus 161 ~~~~~~~Vi--TVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~ 238 (573)
+..+..++. .+|.+|+. -+++++++...|.+. -+.+--.||.+....+.... ..+.++++|+|=|.|
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~--------~~~~~~~vniGN~HT 179 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVS--------SREGIIVVNIGNGHT 179 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhh--------ccCCeEEEEeCCccE
Confidence 445677887 88888653 245556666566555 34444444444333333221 367899999999999
Q ss_pred EEEEEEEeCCeEEEEEeeccccchHHHHHHHHHHH
Q 008233 239 DVTVSATAGGVSQIKALSGSAIGGEDLLQNMMRHL 273 (573)
Q Consensus 239 Dvsv~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l 273 (573)
=..++ ..+..+-+.......+-...+...|.++.
T Consensus 180 laa~v-~~~rI~GvfEHHT~~l~~~kL~~~l~~l~ 213 (254)
T PF08735_consen 180 LAALV-KDGRIYGVFEHHTGMLTPEKLEEYLERLR 213 (254)
T ss_pred EEEEE-eCCEEEEEEecccCCCCHHHHHHHHHHHH
Confidence 88887 33323333333333365555554444443
No 152
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=60.13 E-value=6.3 Score=40.02 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=17.2
Q ss_pred cEEEEEecCCceeEEEEEE
Q 008233 226 KIAVIFNMGAGYCDVTVSA 244 (573)
Q Consensus 226 ~~vlV~D~GggT~Dvsv~~ 244 (573)
.+++++|+||.|+|++++.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCEEEEEcCccceeeEEec
Confidence 4599999999999999986
No 153
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=59.53 E-value=29 Score=25.70 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=30.4
Q ss_pred HHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Q 008233 154 AMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHV 194 (573)
Q Consensus 154 ~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~ 194 (573)
+....+.... ....+..|+.++..||..+.+.|+..||.-
T Consensus 6 ~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 6 AMVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred HHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 3334444432 336789999999999999999999999865
No 154
>PRK07058 acetate kinase; Provisional
Probab=59.49 E-value=1.3e+02 Score=31.53 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCc-CcHHHHHHHHhHcC
Q 008233 336 VNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCS-YIPKVRNLVQSTCK 386 (573)
Q Consensus 336 l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-~~p~v~~~l~~~f~ 386 (573)
.++-+..++.+.|-...... ..+|.|+++||-+ ..+.+|+.+.+.+.
T Consensus 297 A~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 34445566666665555443 3699999999999 99999999998873
No 155
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=59.14 E-value=13 Score=33.46 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=15.5
Q ss_pred EEEEEcCccceEEEEEe
Q 008233 28 AIGIDIGTSQCSIAFWN 44 (573)
Q Consensus 28 vvGIDfGTt~s~va~~~ 44 (573)
++|||.|+++++.|+..
T Consensus 2 ILGIDPGl~~~G~av~~ 18 (154)
T cd00529 2 ILGIDPGSRNTGYGVIE 18 (154)
T ss_pred EEEEccCcCceEEEEEE
Confidence 79999999999999873
No 156
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=58.32 E-value=33 Score=33.77 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=34.4
Q ss_pred CCCCeEEEEcCCcCcHHH----HHHHHhHcCC----ccc--cCCCCCccceehhHHHHhHHhcC
Q 008233 360 EDLNDVILVGGCSYIPKV----RNLVQSTCKK----VEL--YEGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 360 ~~i~~V~LvGG~s~~p~v----~~~l~~~f~~----~~i--~~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
...+.|+|.|-++++|-+ ++.|++.|.. ..+ ....-----.|.|||+.|.-+++
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAG 335 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAG 335 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcc
Confidence 356789999999998764 5666666621 122 11122223468899999877776
No 157
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=58.30 E-value=9.1 Score=41.37 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=17.0
Q ss_pred eEEEEEcCccceEEEEEeC
Q 008233 27 IAIGIDIGTSQCSIAFWNG 45 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~~ 45 (573)
.++|||+|||++++++++.
T Consensus 2 ~ilgiD~GTss~K~~l~d~ 20 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR 20 (465)
T ss_pred eEEEEecCCCcEEEEEEcC
Confidence 5899999999999999953
No 158
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=55.58 E-value=13 Score=32.93 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=18.2
Q ss_pred CeEEEEEcCccceEEEEEeCC
Q 008233 26 EIAIGIDIGTSQCSIAFWNGS 46 (573)
Q Consensus 26 ~~vvGIDfGTt~s~va~~~~~ 46 (573)
+.++|||+||-.+++|+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 478999999999999997544
No 159
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=55.41 E-value=1.4e+02 Score=29.66 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHc
Q 008233 341 FEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTC 385 (573)
Q Consensus 341 ~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f 385 (573)
++.+...+..+++. ..+..++++||-+...++|+.+++..
T Consensus 206 ~~~l~~~~~~a~~~-----~~~~~lv~~GGVaaN~~lr~~l~~~~ 245 (268)
T PF00814_consen 206 ADHLAKKAPRALEK-----PRAKSLVVSGGVAANKYLREGLRKLC 245 (268)
T ss_dssp HHHHHHHHHHHHHH-----HTCSEEEEESGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----hcccccchHHHHHHHHHHHHHHHHHH
Confidence 34444445555554 34668999999999999999998765
No 160
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=55.02 E-value=65 Score=34.12 Aligned_cols=95 Identities=18% Similarity=0.270 Sum_probs=58.1
Q ss_pred EEEEecCCceeEEEEEEEeCCeEEEEEeeccc---cchHHHHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhh
Q 008233 228 AVIFNMGAGYCDVTVSATAGGVSQIKALSGSA---IGGEDLLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIH 304 (573)
Q Consensus 228 vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~---lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 304 (573)
=+.+|+|-.|+-.+++....+..--..+..++ .|.+-+.+ |..-. +
T Consensus 3 GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSR-I~~a~-~----------------------------- 51 (412)
T PF14574_consen 3 GIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISR-ISYAL-S----------------------------- 51 (412)
T ss_dssp EEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHH-HHHHH-------------------------------
T ss_pred EEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHH-HHHhc-C-----------------------------
Confidence 36899999999999999877654434444444 44443332 22111 0
Q ss_pred hcCCCceEEEEEEecCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHH
Q 008233 305 KLSSETSVQINVDLGNGLKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVR 378 (573)
Q Consensus 305 ~LS~~~~~~i~i~l~~g~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~ 378 (573)
.+.++++-+-+++.+..++.+++.++++++++|..+.++|-++-.-++.
T Consensus 52 -------------------------~~~~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLll 100 (412)
T PF14574_consen 52 -------------------------PEGLEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLL 100 (412)
T ss_dssp -------------------------TTHHHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHH
T ss_pred -------------------------CchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHc
Confidence 1224445555778888999999999999999999999999665444443
No 161
>PRK15027 xylulokinase; Provisional
Probab=54.92 E-value=9.9 Score=41.31 Aligned_cols=18 Identities=44% Similarity=0.684 Sum_probs=16.2
Q ss_pred EEEEEcCccceEEEEEeC
Q 008233 28 AIGIDIGTSQCSIAFWNG 45 (573)
Q Consensus 28 vvGIDfGTt~s~va~~~~ 45 (573)
++|||+|||++++++++.
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE 19 (484)
T ss_pred EEEEEecccceEEEEEcC
Confidence 789999999999999853
No 162
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=53.88 E-value=35 Score=37.62 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=37.9
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcC--CccccCCC---CCccceehhHHHHhHHhcC
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCK--KVELYEGI---NPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~--~~~i~~~~---~p~~aVA~GAa~~a~~~~~ 413 (573)
.++.|+|+||.+...++++.|.+.+. +.++..+. .-|.+++.|++.+....++
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g 302 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAG 302 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcC
Confidence 46689999999999999999996652 33444432 4567888888876554433
No 163
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=52.49 E-value=47 Score=34.95 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=25.4
Q ss_pred CccEEEEEecCCceeEEEEEEEe-CCeEEEEE
Q 008233 224 SEKIAVIFNMGAGYCDVTVSATA-GGVSQIKA 254 (573)
Q Consensus 224 ~~~~vlV~D~GggT~Dvsv~~~~-~~~~~v~~ 254 (573)
..+.+|++|+||..+-++++++. +|.+++..
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~~ 104 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIEQ 104 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCccccc
Confidence 47899999999999999999998 45554443
No 164
>PLN02295 glycerol kinase
Probab=51.58 E-value=13 Score=40.85 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=17.5
Q ss_pred eEEEEEcCccceEEEEEe-CCc
Q 008233 27 IAIGIDIGTSQCSIAFWN-GSE 47 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~-~~~ 47 (573)
.++|||+|||++++++++ +|+
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~ 22 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDAR 22 (512)
T ss_pred CEEEEecCCCceEEEEECCCCC
Confidence 379999999999999994 344
No 165
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=51.56 E-value=39 Score=24.78 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Q 008233 151 ELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHV 194 (573)
Q Consensus 151 ~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~ 194 (573)
.+.+..+.++... .-.++-|+ ++..+|..+.+.|...||..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444555555443 55679999 89999999999999999865
No 166
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=51.50 E-value=13 Score=40.37 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=16.6
Q ss_pred eEEEEEcCccceEEEEEe
Q 008233 27 IAIGIDIGTSQCSIAFWN 44 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~ 44 (573)
.++|||+|||++++++++
T Consensus 2 ~~lgiDiGtt~iKa~l~d 19 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFD 19 (493)
T ss_pred eEEEEecCCCceEEEEEC
Confidence 689999999999999985
No 167
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=50.97 E-value=2.9e+02 Score=28.17 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHc
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTC 385 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f 385 (573)
.++.|+|.||.+...++++.|.+.+
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l 266 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMA 266 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHH
Confidence 3668999999999999999999965
No 168
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=50.86 E-value=73 Score=31.23 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHH
Q 008233 330 REEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLV 381 (573)
Q Consensus 330 r~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l 381 (573)
++..+.+....+.....+|+..+++.+..-..=+.+++.||.++ .+...+
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~--~~~~~~ 230 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK--LLLDEL 230 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH--hhhhhc
Confidence 56677777777777777777777765432223358999999876 454444
No 169
>PLN02669 xylulokinase
Probab=50.80 E-value=17 Score=40.33 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=19.5
Q ss_pred CCCCCeEEEEEcCccceEEEEEe
Q 008233 22 SPFPEIAIGIDIGTSQCSIAFWN 44 (573)
Q Consensus 22 ~~~~~~vvGIDfGTt~s~va~~~ 44 (573)
.+....++|||+||+.+++++++
T Consensus 4 ~~~~~~~LGiD~GT~s~Ka~l~d 26 (556)
T PLN02669 4 LPEDSLFLGFDSSTQSLKATVLD 26 (556)
T ss_pred CCCCCeEEEEecccCCeEEEEEc
Confidence 44556899999999999999884
No 170
>PRK13317 pantothenate kinase; Provisional
Probab=50.66 E-value=21 Score=35.63 Aligned_cols=43 Identities=21% Similarity=0.438 Sum_probs=27.4
Q ss_pred ccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccccchHHHHHHHHHHH
Q 008233 225 EKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSAIGGEDLLQNMMRHL 273 (573)
Q Consensus 225 ~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l 273 (573)
...++++++|.|+ +++.+.++ +..-..|..+||-.|+ -|..+|
T Consensus 95 ~~~~~i~~iG~g~---si~~~~g~--~~~r~~Gt~iGGgt~~-gL~~lL 137 (277)
T PRK13317 95 LNDYIFTNIGTGT---SIHYVDGN--SQRRVGGTGIGGGTIQ-GLSKLL 137 (277)
T ss_pred CCcEEEEEecCce---EEEEEeCC--ceEEEccccccHHHHH-HHHHHH
Confidence 5678999999884 46666665 3344455558886554 445544
No 171
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=49.93 E-value=16 Score=40.28 Aligned_cols=18 Identities=33% Similarity=0.398 Sum_probs=16.9
Q ss_pred eEEEEEcCccceEEEEEe
Q 008233 27 IAIGIDIGTSQCSIAFWN 44 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~ 44 (573)
.++|||+|||.+++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 589999999999999997
No 172
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=49.68 E-value=8 Score=41.04 Aligned_cols=70 Identities=21% Similarity=0.278 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCC-----cc------cc---CCCCCccceehhHHHHh
Q 008233 343 KCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKK-----VE------LY---EGINPLEAAVSGAALEG 408 (573)
Q Consensus 343 ~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~-----~~------i~---~~~~p~~aVA~GAa~~a 408 (573)
.|+..|+.++... ....--+.|++|||+...|.+.+.|+++.-+ .+ ++ +..||...+=+|||++|
T Consensus 509 sii~sid~~~sdd-~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla 587 (618)
T KOG0797|consen 509 SIISSIDSALSDD-TKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILA 587 (618)
T ss_pred hHHHhhhhhccch-hhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhh
Confidence 3444455444431 1122346799999999999999999987632 21 12 23678888999999999
Q ss_pred HHhcC
Q 008233 409 AVTSG 413 (573)
Q Consensus 409 ~~~~~ 413 (573)
..-..
T Consensus 588 ~l~~~ 592 (618)
T KOG0797|consen 588 ILDFV 592 (618)
T ss_pred HHHHH
Confidence 76443
No 173
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=49.50 E-value=14 Score=40.78 Aligned_cols=17 Identities=29% Similarity=0.597 Sum_probs=15.8
Q ss_pred EEEEEcCccceEEEEEe
Q 008233 28 AIGIDIGTSQCSIAFWN 44 (573)
Q Consensus 28 vvGIDfGTt~s~va~~~ 44 (573)
++|||+|||++++++++
T Consensus 2 ~lgID~GTts~Ka~l~d 18 (541)
T TIGR01315 2 YIGVDVGTGSARACIID 18 (541)
T ss_pred EEEEEecCcCEEEEEEc
Confidence 78999999999999994
No 174
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=49.37 E-value=33 Score=37.11 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=18.5
Q ss_pred CCeEEEEEcCccceEEEEEeC
Q 008233 25 PEIAIGIDIGTSQCSIAFWNG 45 (573)
Q Consensus 25 ~~~vvGIDfGTt~s~va~~~~ 45 (573)
...++|||.|||.+++++++.
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~ 25 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNA 25 (516)
T ss_pred cceEEEEEcCCCceEEEEEec
Confidence 468999999999999999963
No 175
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=49.03 E-value=14 Score=40.34 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=16.5
Q ss_pred eEEEEEcCccceEEEEEeC
Q 008233 27 IAIGIDIGTSQCSIAFWNG 45 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~~ 45 (573)
.++|||+|||++++++++.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~ 19 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE 19 (505)
T ss_pred CEEEEeccccceEEEEEcC
Confidence 3799999999999999843
No 176
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=46.77 E-value=71 Score=31.85 Aligned_cols=49 Identities=29% Similarity=0.254 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCC------ccccCCCCCccceehhHHHHhH
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCKK------VELYEGINPLEAAVSGAALEGA 409 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~~------~~i~~~~~p~~aVA~GAa~~a~ 409 (573)
+.+.|+|-|+.+..+.+.+.+++.... .++......+.+.+.|||.++.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 356888888877766666666666532 1233344456788999998864
No 177
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=46.41 E-value=16 Score=34.69 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC---eeeeechhHHHHHHHHH
Q 008233 172 PVSFSRFQLTRIERACAMAGLH---VLRLMPEPTAVALLYAQ 210 (573)
Q Consensus 172 Pa~f~~~qr~~l~~Aa~~AGl~---~~~li~Ep~AAal~y~~ 210 (573)
|..-...-.+.+.+|.+..|+. ++.++|+.+|.-++.++
T Consensus 163 ~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 163 SGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred cCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 4334445567777777777775 68899999998887654
No 178
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.23 E-value=45 Score=32.59 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=45.2
Q ss_pred EEEEEecCCceeEEEEEEEeC-CeE----------------------EEEEeeccccchHHHHHHHHHHHHHhhhhhcCC
Q 008233 227 IAVIFNMGAGYCDVTVSATAG-GVS----------------------QIKALSGSAIGGEDLLQNMMRHLMPNSESLFSS 283 (573)
Q Consensus 227 ~vlV~D~GggT~Dvsv~~~~~-~~~----------------------~v~~~~g~~lGG~~iD~~l~~~l~~~~~~~~~~ 283 (573)
++|++|+|.||.|+-.+.-.. +.+ .-+.-.|...||--..+++.+++..-.
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~G~~MGGGp~travrrhlk~G~------ 75 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALIGVPMGGGPTTRAVRRHLKKGT------ 75 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEEeeecCCChhhHHHHHHHhcCC------
Confidence 589999999999998876421 100 123345666899999999988885422
Q ss_pred CCccCHHHHHHHHHHHHHhhh
Q 008233 284 YGMNEIKSMALLRVATQDAIH 304 (573)
Q Consensus 284 ~~~~~~~~~~~L~~~~e~~K~ 304 (573)
.+...+.+...+.+.-|+.++
T Consensus 76 rVyatedAAlT~hddleRv~e 96 (342)
T COG4012 76 RVYATEDAALTLHDDLERVEE 96 (342)
T ss_pred eeEechhhhhhhhcCHHHHHh
Confidence 222334444455555555554
No 179
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=45.61 E-value=3.4e+02 Score=27.53 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCC--ccccCCC---CCccceehhHH
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCKK--VELYEGI---NPLEAAVSGAA 405 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~~--~~i~~~~---~p~~aVA~GAa 405 (573)
.++.|+|.||.+...++++.|.+.... .++..+. --|.++++|+|
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 467899999999999999999988732 2333222 23566666665
No 180
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=45.56 E-value=4.5e+02 Score=28.85 Aligned_cols=179 Identities=14% Similarity=0.055 Sum_probs=95.9
Q ss_pred ccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc--cchHHHHHHHHHHHHHhhhh-hcC---CCCccCHHHHHHHHHH
Q 008233 225 EKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA--IGGEDLLQNMMRHLMPNSES-LFS---SYGMNEIKSMALLRVA 298 (573)
Q Consensus 225 ~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~--lGG~~iD~~l~~~l~~~~~~-~~~---~~~~~~~~~~~~L~~~ 298 (573)
+.-++++|-.|--...++-...++.+..+...... +|.-.- +|..++=-+-.. .++ .....++.....+...
T Consensus 137 ~a~vl~iDg~Gd~~s~~~~~~~~~~~~~i~~~~~~~SLG~fY~--~~T~~lGf~~n~~EgKvMgLAaYG~p~y~~~~~d~ 214 (555)
T COG2192 137 EALVLTIDGAGDGLSTSVWHGRNGQLTPIAQSRGIDSLGLFYA--AFTELLGFKPNSDEGKVMGLAAYGDPNYDLSLLDL 214 (555)
T ss_pred cceEEEEeccCCceEEEEEeccCCeeEEEEeecCcchHHHHHH--HHHHHhCCCCCCCCccEEEeeccCCcccchHHHHH
Confidence 68899999998777777777777877777765555 664332 555554222111 011 1111122211222222
Q ss_pred HHHhh------------hhcCCCceEEEEEE--ecCC-eeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC
Q 008233 299 TQDAI------------HKLSSETSVQINVD--LGNG-LKVSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLN 363 (573)
Q Consensus 299 ~e~~K------------~~LS~~~~~~i~i~--l~~g-~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~ 363 (573)
..+ | ..+..-. .+.+. +... .....+..-.++...++..++++.--+-.-+.+.. ..+
T Consensus 215 l~~-~~~~~~~i~~~~~~~~~~l~--~~~~~~~~~r~~~~~~~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~ 287 (555)
T COG2192 215 LRE-KEDGLFVINGELLKRLARLG--TFSLLGALKRRLPESPSTERAADIAASAQAYLEELVLEMLRYLREET----GED 287 (555)
T ss_pred Hhh-ccccceeccHHHHHhccccc--eeccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHh----Ccc
Confidence 222 1 0011100 11100 0000 01234444556666667777766665555555432 155
Q ss_pred eEEEEcCCcCcHHHH-HHHHhHcCCcccc-CCCCCccceehhHHHHhHHhcC
Q 008233 364 DVILVGGCSYIPKVR-NLVQSTCKKVELY-EGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 364 ~V~LvGG~s~~p~v~-~~l~~~f~~~~i~-~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
.+.+.||....-..- +.+++.+ ...+. .+.--|.-.|.|||+++....+
T Consensus 288 ~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvGAAl~~~~~~~ 338 (555)
T COG2192 288 NLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVGAALAVKRELG 338 (555)
T ss_pred ceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHHHHHHHHHHhc
Confidence 899999998776666 6666666 44543 4455677899999999876544
No 181
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=45.43 E-value=48 Score=24.62 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=26.7
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Q 008233 165 RNVVLTIPVSFSRFQLTRIERACAMAGLHV 194 (573)
Q Consensus 165 ~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~ 194 (573)
..-.++.|+.++..+|+.+...|...|+..
T Consensus 16 ~~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 16 MRDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 356777899999999999999999999865
No 182
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=45.13 E-value=20 Score=37.43 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=18.9
Q ss_pred CeEEEEEcCccceEEEEEeCCc
Q 008233 26 EIAIGIDIGTSQCSIAFWNGSE 47 (573)
Q Consensus 26 ~~vvGIDfGTt~s~va~~~~~~ 47 (573)
..++|||.|+|.+++.+.++++
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCC
Confidence 3789999999999999987654
No 183
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=44.64 E-value=1.7e+02 Score=24.50 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=42.5
Q ss_pred CCCCc-eeEEEEEeecCCCccEEEEEEecCCcccccCceeEEEEEeCCCCCCCCCCEEEEEEEEcC--CccEEEEEE
Q 008233 450 TTMPA-RKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDA--SSVLRVLVG 523 (573)
Q Consensus 450 ~~iP~-~~~~~~~~~~d~q~~~~i~i~eg~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~id~--~g~l~v~~~ 523 (573)
+.=|. ..+..|....+....+.|.+|.-+.. .+..||++.+. +.....|. .....|.+.. .|.|.+++.
T Consensus 45 t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~---~~~~iG~~~~~-l~~l~~g~-~~~~~~~L~~~~~g~l~~~~~ 116 (119)
T cd04036 45 SINPVWNETFEFRIQSQVKNVLELTVMDEDYV---MDDHLGTVLFD-VSKLKLGE-KVRVTFSLNPQGKEELEVEFL 116 (119)
T ss_pred CCCCccceEEEEEeCcccCCEEEEEEEECCCC---CCcccEEEEEE-HHHCCCCC-cEEEEEECCCCCCceEEEEEE
Confidence 44444 33455554443344588889985442 56789999887 54444443 4777777766 488877765
No 184
>PLN03173 chalcone synthase; Provisional
Probab=44.52 E-value=84 Score=33.11 Aligned_cols=50 Identities=4% Similarity=0.015 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCc-CcHHHHHHHHhHcC
Q 008233 337 NQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCS-YIPKVRNLVQSTCK 386 (573)
Q Consensus 337 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-~~p~v~~~l~~~f~ 386 (573)
.+.-.+-..+.++++|+++++++++||+|+.+..+. ..|.+--.|.+.++
T Consensus 99 ~~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 99 VVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 344455566778899999999999999998876544 58999999999984
No 185
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=43.88 E-value=62 Score=32.51 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCC--------ccccCCCCCccceehhHHHHhH
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCKK--------VELYEGINPLEAAVSGAALEGA 409 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~~--------~~i~~~~~p~~aVA~GAa~~a~ 409 (573)
+.+.|+|-||.+..+.+.+.|++.+.. .++......+.+.++|||..+.
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~l 301 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLHL 301 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHhh
Confidence 356788877777666666666665521 1233344556788999998763
No 186
>PRK13321 pantothenate kinase; Reviewed
Probab=43.49 E-value=24 Score=34.76 Aligned_cols=19 Identities=21% Similarity=0.590 Sum_probs=17.2
Q ss_pred EEEEEcCccceEEEEEeCC
Q 008233 28 AIGIDIGTSQCSIAFWNGS 46 (573)
Q Consensus 28 vvGIDfGTt~s~va~~~~~ 46 (573)
+++||+|.|++++|++.++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6899999999999999755
No 187
>PLN03172 chalcone synthase family protein; Provisional
Probab=42.82 E-value=91 Score=32.87 Aligned_cols=55 Identities=5% Similarity=0.025 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCc-CcHHHHHHHHhHcC
Q 008233 332 EFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCS-YIPKVRNLVQSTCK 386 (573)
Q Consensus 332 ~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-~~p~v~~~l~~~f~ 386 (573)
..+...+.-.+-..+..+++|+++++++++||+|+++-.+. .+|.+--.|.+.++
T Consensus 94 r~~~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 94 RQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 33334444556666778899999999999999998776555 69999999999994
No 188
>PRK13318 pantothenate kinase; Reviewed
Probab=42.63 E-value=25 Score=34.60 Aligned_cols=20 Identities=20% Similarity=0.640 Sum_probs=17.4
Q ss_pred EEEEEcCccceEEEEEeCCc
Q 008233 28 AIGIDIGTSQCSIAFWNGSE 47 (573)
Q Consensus 28 vvGIDfGTt~s~va~~~~~~ 47 (573)
+++||+|.|+++++++++++
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 78999999999999987543
No 189
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=42.51 E-value=39 Score=30.21 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=16.9
Q ss_pred EEEEEcCccceEEEEE--eCCcEEEE
Q 008233 28 AIGIDIGTSQCSIAFW--NGSEVELI 51 (573)
Q Consensus 28 vvGIDfGTt~s~va~~--~~~~~~ii 51 (573)
++|||-|+++++.|+. .+++...+
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i 26 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLI 26 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEE
Confidence 6899999999999998 34455544
No 190
>PRK09557 fructokinase; Reviewed
Probab=42.42 E-value=41 Score=33.79 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcC--------CccccCCCCCccceehhHHHHh
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCK--------KVELYEGINPLEAAVSGAALEG 408 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~--------~~~i~~~~~p~~aVA~GAa~~a 408 (573)
+.+.|+|-||.++.+.+.+.|++.+. ..++....-.+.+.++|||++.
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 35678888887777666555555441 1123333445678899999754
No 191
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=41.78 E-value=3.8e+02 Score=27.29 Aligned_cols=205 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCCeeeeechhHHHHHHHHHhhcccccccCC--CCCccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc--cch-HHH
Q 008233 191 GLHVLRLMPEPTAVALLYAQQQQQSVHENLG--SGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA--IGG-EDL 265 (573)
Q Consensus 191 Gl~~~~li~Ep~AAal~y~~~~~~~~~~~~~--~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~--lGG-~~i 265 (573)
|++.+.|||+=+|.|+....-.......... ...+...+|+-.|-| +=++.+--.++.+.++.++|.. +.= .+.
T Consensus 91 g~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTG-LG~a~l~~~~~~~~v~~sEgGH~~fap~~~~ 169 (316)
T PF02685_consen 91 GIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTG-LGVALLVPDGDGYYVLPSEGGHVDFAPRTDE 169 (316)
T ss_dssp T-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSS-EEEEEEEEETTEEEEEEE-GGGSB---SSHH
T ss_pred CCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCC-cEEEEEEecCCceEeCCCccccccCCCCCHH
Q ss_pred HHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEEecCCeeEEEEEcHHHH---HHHHHHHHH
Q 008233 266 LQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVDLGNGLKVSKNVTREEF---EEVNQKVFE 342 (573)
Q Consensus 266 D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~l~~g~d~~~~itr~~f---e~l~~~~~~ 342 (573)
+..|.+++.+++..-.-.++. +-+-+.+|.+.....+..-+...+ .-.|++.-+ +.++...++
T Consensus 170 e~~l~~~l~~~~~~vs~E~vl-SG~GL~~ly~~l~~~~~~~~~~~~-------------~~~I~~~A~~~~d~~a~~al~ 235 (316)
T PF02685_consen 170 EAELLRFLRRRYGRVSVERVL-SGRGLENLYRFLAGERGAEPPLLS-------------AAEISAAALEGGDPLAREALD 235 (316)
T ss_dssp HHHHHHHHHHHCTS-BHHHCS-SHHHHHHHHHHHHCCTT--S-----------------HHHHHHHHHCT--HHHHHHHH
T ss_pred HHHHHHHHHHhcCCceeEeec-chhhHHHHHHHHHhccCCCCCCCC-------------HHHHHHHHHcCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHcCCCcCCCCeEEEEcCCc-CcHHH------------HHHHHhHcCCccccCCCCCccceehhHHHHhH
Q 008233 343 KCGSLITQCLHDAKVEIEDLNDVILVGGCS-YIPKV------------RNLVQSTCKKVELYEGINPLEAAVSGAALEGA 409 (573)
Q Consensus 343 ~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-~~p~v------------~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~ 409 (573)
.+...+-+...+.-+...--..|+|.||-+ +++-+ +-.++.++...++....|++ +.-.||+.++.
T Consensus 236 ~f~~~lg~~agdlaL~~~a~gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~-~gL~Gaa~~a~ 314 (316)
T PF02685_consen 236 LFARILGRVAGDLALTFLARGGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLEDIPVYLITDPD-AGLLGAAAYAR 314 (316)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHTT--EEEE--S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCeeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHhcCcEEEEeCCC-HHHHHHHHHHh
Q ss_pred Hh
Q 008233 410 VT 411 (573)
Q Consensus 410 ~~ 411 (573)
..
T Consensus 315 ~~ 316 (316)
T PF02685_consen 315 QH 316 (316)
T ss_dssp H-
T ss_pred cC
No 192
>PLN03170 chalcone synthase; Provisional
Probab=41.46 E-value=79 Score=33.42 Aligned_cols=53 Identities=6% Similarity=0.041 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCc-CcHHHHHHHHhHcC
Q 008233 334 EEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCS-YIPKVRNLVQSTCK 386 (573)
Q Consensus 334 e~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-~~p~v~~~l~~~f~ 386 (573)
+...+...+-..+..+++|+++++++++||+|+++-.+. .+|.+--.|.+.++
T Consensus 100 ~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 100 DIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 333444555667778999999999999999998876544 69999999999994
No 193
>PRK12408 glucokinase; Provisional
Probab=41.44 E-value=27 Score=35.87 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.6
Q ss_pred CCCCCCeEEEEEcCccceEEEEEe
Q 008233 21 SSPFPEIAIGIDIGTSQCSIAFWN 44 (573)
Q Consensus 21 ~~~~~~~vvGIDfGTt~s~va~~~ 44 (573)
.|+.+..++|+|+|.|++++|+.+
T Consensus 11 ~~~~~~~~L~~DIGGT~i~~al~d 34 (336)
T PRK12408 11 AVPRPESFVAADVGGTHVRVALVC 34 (336)
T ss_pred cCcccccEEEEEcChhhhheeEEe
Confidence 456677789999999999999985
No 194
>PLN03168 chalcone synthase; Provisional
Probab=38.89 E-value=1e+02 Score=32.34 Aligned_cols=56 Identities=7% Similarity=0.091 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCC-cCcHHHHHHHHhHcC
Q 008233 331 EEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGC-SYIPKVRNLVQSTCK 386 (573)
Q Consensus 331 ~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~-s~~p~v~~~l~~~f~ 386 (573)
+..+...+...+-..+..+++|+++++++++||+|+++-.+ -.+|.+--.|.+.++
T Consensus 92 ~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 92 VRHDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 33444445556666778899999999999999999876432 357999999999994
No 195
>PRK13331 pantothenate kinase; Reviewed
Probab=38.04 E-value=41 Score=33.03 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=19.9
Q ss_pred CCeEEEEEcCccceEEEEEeCCc
Q 008233 25 PEIAIGIDIGTSQCSIAFWNGSE 47 (573)
Q Consensus 25 ~~~vvGIDfGTt~s~va~~~~~~ 47 (573)
....+.||.|+|+++++++++++
T Consensus 6 ~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 6 SNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCcEEEEEeCCCcEEEEEEECCE
Confidence 45789999999999999998654
No 196
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=38.01 E-value=21 Score=31.17 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.8
Q ss_pred EEEEcCccceEEEEEeC
Q 008233 29 IGIDIGTSQCSIAFWNG 45 (573)
Q Consensus 29 vGIDfGTt~s~va~~~~ 45 (573)
+|||+|+..+++|+.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 59999999999998744
No 197
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=37.40 E-value=31 Score=31.41 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=16.9
Q ss_pred CeEEEEEcCccceEEEEEe
Q 008233 26 EIAIGIDIGTSQCSIAFWN 44 (573)
Q Consensus 26 ~~vvGIDfGTt~s~va~~~ 44 (573)
+.++|||-|++++++|+..
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 4799999999999999873
No 198
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=37.35 E-value=76 Score=31.74 Aligned_cols=44 Identities=9% Similarity=0.128 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCCcCCCCeEEE-EcCCcCcHHHHHHHHhHcC
Q 008233 343 KCGSLITQCLHDAKVEIEDLNDVIL-VGGCSYIPKVRNLVQSTCK 386 (573)
Q Consensus 343 ~~~~~i~~~l~~~~~~~~~i~~V~L-vGG~s~~p~v~~~l~~~f~ 386 (573)
-+...++++|++.++++.+||.++. +..++-.|.+-.+|.+.|+
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 3467788999999999999998766 6678899999999999994
No 199
>PRK13320 pantothenate kinase; Reviewed
Probab=34.76 E-value=45 Score=32.58 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=18.6
Q ss_pred eEEEEEcCccceEEEEEeCCc
Q 008233 27 IAIGIDIGTSQCSIAFWNGSE 47 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~~~~ 47 (573)
..+.||.|+|+++.+++.+++
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 589999999999999987654
No 200
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=34.73 E-value=40 Score=34.89 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCC-cc--ccCCCCCccceehhHHH
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCKK-VE--LYEGINPLEAAVSGAAL 406 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~~-~~--i~~~~~p~~aVA~GAa~ 406 (573)
++|.|++.||.+..+.+++.|.+.+.. .+ +....+-.++.|.||..
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 578999999999999999999888732 22 22233344677778764
No 201
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.50 E-value=4.5e+02 Score=25.74 Aligned_cols=52 Identities=21% Similarity=0.197 Sum_probs=35.0
Q ss_pred cCCCCeEEEEcCCcCcHH---HHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcC
Q 008233 359 IEDLNDVILVGGCSYIPK---VRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 359 ~~~i~~V~LvGG~s~~p~---v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
....|.|+|.|--+.+.. +++.|....-+ ++ .. -|-++.+.|.|+.|.-...
T Consensus 266 ~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~-k~-~~-l~~esaaiG~a~IA~DI~~ 320 (332)
T COG4020 266 VYGCDGVVLAGSVGGDREPMDVLKRIKSKVFN-KV-AV-LPPESAAIGLALIARDIAS 320 (332)
T ss_pred ecCCceEEEecccccccchhhHHHHHHHHHHH-HH-hh-cCchhhhhhhHHHHHHHHc
Confidence 446788999997776666 77777766522 22 22 2445589999999876654
No 202
>PRK13326 pantothenate kinase; Reviewed
Probab=34.21 E-value=51 Score=32.58 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=19.7
Q ss_pred CCeEEEEEcCccceEEEEEeCCc
Q 008233 25 PEIAIGIDIGTSQCSIAFWNGSE 47 (573)
Q Consensus 25 ~~~vvGIDfGTt~s~va~~~~~~ 47 (573)
-+..+.||.|+|+++++++++++
T Consensus 5 ~~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 5 LSSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred ccEEEEEEeCCCeEEEEEEECCE
Confidence 35789999999999999998664
No 203
>PTZ00107 hexokinase; Provisional
Probab=33.23 E-value=1e+02 Score=33.18 Aligned_cols=24 Identities=13% Similarity=0.237 Sum_probs=21.9
Q ss_pred ccEEEEEecCCceeEEEEEEEeCC
Q 008233 225 EKIAVIFNMGAGYCDVTVSATAGG 248 (573)
Q Consensus 225 ~~~vlV~D~GggT~Dvsv~~~~~~ 248 (573)
.+.+|.+|+||.++-+.++++.++
T Consensus 73 ~G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 73 KGVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred cceEEEEecCCceEEEEEEEeCCC
Confidence 677999999999999999999764
No 204
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.20 E-value=2.9e+02 Score=27.18 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=33.9
Q ss_pred ccEEEEEecCCceeEEEEEEEeCCeEE-EEEeeccccchHHHHHHHHHHHHHhhh
Q 008233 225 EKIAVIFNMGAGYCDVTVSATAGGVSQ-IKALSGSAIGGEDLLQNMMRHLMPNSE 278 (573)
Q Consensus 225 ~~~vlV~D~GggT~Dvsv~~~~~~~~~-v~~~~g~~lGG~~iD~~l~~~l~~~~~ 278 (573)
....||+|+|-|.+..+++.- +.+. +.......+.-..|-..|.+++.-++.
T Consensus 226 a~palvVd~GngHttaalvde--dRI~gv~EHHT~~Lspekled~I~rf~~GeL~ 278 (342)
T COG4012 226 ADPALVVDYGNGHTTAALVDE--DRIVGVYEHHTIRLSPEKLEDQIIRFVEGELE 278 (342)
T ss_pred cCceEEEEccCCceEEEEecC--CeEEEEeecccccCCHHHHHHHHHHHHhcccc
Confidence 458999999999998888753 2332 222223337777777777776665554
No 205
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=32.65 E-value=42 Score=28.71 Aligned_cols=32 Identities=19% Similarity=0.086 Sum_probs=26.8
Q ss_pred EEEEEEEcCC-ccEEEEEEEcCCCCCCCcccce
Q 008233 506 INVCMDIDAS-SVLRVLVGVIMPGNPHPVIPVM 537 (573)
Q Consensus 506 i~v~~~id~~-g~l~v~~~~~~~g~~~~~~~~~ 537 (573)
-.+.|++|.. |.+.|++.+..||+.+.-+|..
T Consensus 67 t~l~F~~dd~lg~~vVkI~d~~TgeVIRqIPpe 99 (120)
T COG1334 67 THLNFSYDDELGELVVKIIDKDTGEVIRQIPPE 99 (120)
T ss_pred CceEEEEecccCcEEEEEEECCCCcchhhCChH
Confidence 4577899774 9999999999999998877753
No 206
>PLN02377 3-ketoacyl-CoA synthase
Probab=32.28 E-value=93 Score=33.92 Aligned_cols=54 Identities=7% Similarity=0.151 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEE-EcCCcCcHHHHHHHHhHcC
Q 008233 333 FEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVIL-VGGCSYIPKVRNLVQSTCK 386 (573)
Q Consensus 333 fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~L-vGG~s~~p~v~~~l~~~f~ 386 (573)
++...++...-+...++++|+++++++++||.|+. +.+....|.+-.+|.+.++
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 44444555555677888999999999999999987 4445568999999999994
No 207
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=32.03 E-value=97 Score=30.79 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=47.5
Q ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccc
Q 008233 326 KNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEA 399 (573)
Q Consensus 326 ~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~a 399 (573)
-.++.++|++.+-|.+++|.+.+++-|.+.++. .|--|+..-|+.. .+.+.-..-+.-..+..+.+|.++
T Consensus 218 geLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~--~vPmi~fakG~g~--~Le~l~~tG~DVvgLDWTvdp~ea 287 (359)
T KOG2872|consen 218 GELSPEDFEEFSLPYLRQIAEAVKKRLPELGLA--PVPMILFAKGSGG--ALEELAQTGYDVVGLDWTVDPAEA 287 (359)
T ss_pred ccCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCC--CCceEEEEcCcch--HHHHHHhcCCcEEeecccccHHHH
Confidence 468899999999999999999999999887654 4667777777654 333333333311233345566554
No 208
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=31.94 E-value=2.8e+02 Score=28.94 Aligned_cols=15 Identities=7% Similarity=0.233 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhh
Q 008233 263 EDLLQNMMRHLMPNS 277 (573)
Q Consensus 263 ~~iD~~l~~~l~~~~ 277 (573)
+.+|+.|+++|.+++
T Consensus 13 D~iD~~iv~Ll~~R~ 27 (374)
T PRK11199 13 DEVDKQLLELLAKRL 27 (374)
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999999998775
No 209
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=31.43 E-value=1.3e+02 Score=27.33 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCHHH----------------HHHHHHHHHHcCCCeeeeechhHH
Q 008233 140 TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQ----------------LTRIERACAMAGLHVLRLMPEPTA 203 (573)
Q Consensus 140 ~~~~l~~~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~q----------------r~~l~~Aa~~AGl~~~~li~Ep~A 203 (573)
+++++...+.+.+.+..... +.. .+.|++|...+... .+.+.+ ..++ .+.+.|+..|
T Consensus 31 ~~~~~~~~l~~~i~~~~~~~-~~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~---~~~~-pv~i~Nd~~~ 103 (179)
T PF00480_consen 31 SPEELLDALAELIERLLADY-GRS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEE---RFGV-PVIIENDANA 103 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-TCE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHH---HHTS-EEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhc-ccc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhc---ccce-EEEEecCCCc
Confidence 45666666655555544443 222 55666664433321 122332 2355 4588999999
Q ss_pred HHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEEEE
Q 008233 204 VALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVTVS 243 (573)
Q Consensus 204 Aal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~ 243 (573)
+|++........ ..++++.+-+|-| +-.+++
T Consensus 104 ~a~ae~~~~~~~--------~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 104 AALAEYWFGAAK--------DCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHSTTT--------TTSSEEEEEESSS-EEEEEE
T ss_pred ceeehhhcCccC--------CcceEEEEEeecC-CCccee
Confidence 999877644332 2567888888876 344444
No 210
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=30.73 E-value=3e+02 Score=23.41 Aligned_cols=88 Identities=10% Similarity=0.161 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhhhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceEEEEEEecCCeeEEEEEcHHHHHHHHH---HHH
Q 008233 265 LLQNMMRHLMPNSESLFSSYGMNEIKSMALLRVATQDAIHKLSSETSVQINVDLGNGLKVSKNVTREEFEEVNQ---KVF 341 (573)
Q Consensus 265 iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~l~~g~d~~~~itr~~fe~l~~---~~~ 341 (573)
|+..|.+++..-|.+.++.++ .......+|.++++.....++..... +| ..+.+.++.++++.+.. .+.
T Consensus 4 ~E~~lE~~v~g~Far~F~~~v-qPvEIa~~L~remd~~a~~~~~~r~~---aP----N~y~V~Ls~~D~~~l~~~~~~l~ 75 (116)
T PF12401_consen 4 FERRLERAVEGAFARVFRSEV-QPVEIAKALRREMDDQARVVSRGRTL---AP----NVYTVELSPEDYERLSPWGDRLA 75 (116)
T ss_dssp -----SS--STHHHHHHTTSS--THHHHHHHHHHHHHT-B---TT--B----------EEEEEEEHHHHHHH-S-SHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhCCeecCCCCEE---cC----eeEEEEECHHHHHHHhhhHHHHH
Confidence 344444444445555554332 23456677888888876666554431 11 24789999999999875 677
Q ss_pred HHHHHHHHHHHHHcCCCcC
Q 008233 342 EKCGSLITQCLHDAKVEIE 360 (573)
Q Consensus 342 ~~~~~~i~~~l~~~~~~~~ 360 (573)
+++.+.+.+.....++...
T Consensus 76 ~el~~~l~~~a~~qgy~~~ 94 (116)
T PF12401_consen 76 RELADYLAEHAREQGYTFV 94 (116)
T ss_dssp HHHHHHHHHHHHHHT-B-S
T ss_pred HHHHHHHHHHHHHCCCeec
Confidence 8888888888887776544
No 211
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=30.09 E-value=1.6e+02 Score=31.15 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCc-CcHHHHHHHHhHcC
Q 008233 336 VNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCS-YIPKVRNLVQSTCK 386 (573)
Q Consensus 336 l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-~~p~v~~~l~~~f~ 386 (573)
.++-++.++.+.|-...... ...+|.|+++||-+ ..+.|++.|.+.+.
T Consensus 301 A~d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 301 ALDVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 34445556666555555443 13699999999999 99999999998873
No 212
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=29.64 E-value=2e+02 Score=28.86 Aligned_cols=55 Identities=9% Similarity=0.116 Sum_probs=40.0
Q ss_pred CccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccc-cchHHHHHHHHHHHHHhhh
Q 008233 224 SEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNMMRHLMPNSE 278 (573)
Q Consensus 224 ~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~-lGG~~iD~~l~~~l~~~~~ 278 (573)
...+++.+|+||.++.++++...+..+......... -....+-+.|.+.+.+.+.
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 59 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELLK 59 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHHHHH
Confidence 367899999999999999999988765544444444 4445777777777765554
No 213
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=28.54 E-value=65 Score=28.42 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHh
Q 008233 339 KVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEG 408 (573)
Q Consensus 339 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a 408 (573)
++.+++.+-..+.|++.+...++| .++-|=|+-.+|++-+.+.+. .+.|-.|+.|+.+.+
T Consensus 13 ~i~~~L~~ga~~~l~~~g~~~~~i-~v~~VPGa~EiP~a~~~l~~~---------~~~DavI~LG~VIrG 72 (138)
T TIGR00114 13 DITDMLLKGAIDALKRLGAEVDNI-DVIWVPGAFELPLAVKKLAET---------GKYDAVIALGCVIRG 72 (138)
T ss_pred HHHHHHHHHHHHHHHHcCCCccce-EEEECCcHHHHHHHHHHHHhc---------CCCCEEEEEeeEEeC
Confidence 455555666667777888776655 466799999999998887643 235666666666543
No 214
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=27.92 E-value=93 Score=32.37 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHc
Q 008233 337 NQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTC 385 (573)
Q Consensus 337 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f 385 (573)
++...+.+.+.|+++|++++++.++||++++-+++.++ +...+++.|
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~--~d~~~~~ll 312 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINM--NQLIGKKVL 312 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHH--HHHHHHHhc
Confidence 34556667789999999999999999999999998773 333344445
No 215
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=27.76 E-value=49 Score=29.88 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHh
Q 008233 340 VFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEG 408 (573)
Q Consensus 340 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a 408 (573)
+.+++.+-..+.|.+.|.+.++| .|+-|=|+-.+|++-+.+.+. .+.|-.|+.||.+.+
T Consensus 24 It~~Ll~gA~~~l~~~G~~~~~i-~v~~VPGA~EiP~~a~~l~~~---------~~yDaiIaLG~VIrG 82 (158)
T PRK12419 24 IVDQARKGFVAEIAARGGAASQV-DIFDVPGAFEIPLHAQTLAKT---------GRYAAIVAAALVVDG 82 (158)
T ss_pred HHHHHHHHHHHHHHHcCCCccce-EEEECCcHHHHHHHHHHHHhc---------CCCCEEEEEEEEEcC
Confidence 33444444556667778776777 677899999999998877542 245666777776654
No 216
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=27.63 E-value=66 Score=27.29 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCc--HHHHHHHHhHcCC
Q 008233 341 FEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYI--PKVRNLVQSTCKK 387 (573)
Q Consensus 341 ~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~--p~v~~~l~~~f~~ 387 (573)
-....+.|+++|+++++++++|+.|..-|-++.. +.=.+.|++.|+.
T Consensus 24 ~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 24 GAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 3455677999999999999999999988866664 3334568888854
No 217
>PLN02362 hexokinase
Probab=27.54 E-value=1.1e+02 Score=33.37 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=21.9
Q ss_pred ccEEEEEecCCceeEEEEEEEeCC
Q 008233 225 EKIAVIFNMGAGYCDVTVSATAGG 248 (573)
Q Consensus 225 ~~~vlV~D~GggT~Dvsv~~~~~~ 248 (573)
.+.+|.+|+||.+|-|..+++.++
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L~g~ 117 (509)
T PLN02362 94 IGTYYALDLGGTNFRVLRVQLGGQ 117 (509)
T ss_pred ceeEEEEecCCceEEEEEEEecCC
Confidence 677999999999999999999864
No 218
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=26.68 E-value=60 Score=34.64 Aligned_cols=45 Identities=11% Similarity=0.092 Sum_probs=28.0
Q ss_pred HcCCCcCCCCeEEEEcC-CcCcH--HHHHHHHh-HcC--CccccCCCCCcc
Q 008233 354 DAKVEIEDLNDVILVGG-CSYIP--KVRNLVQS-TCK--KVELYEGINPLE 398 (573)
Q Consensus 354 ~~~~~~~~i~~V~LvGG-~s~~p--~v~~~l~~-~f~--~~~i~~~~~p~~ 398 (573)
+.|.+...++.|+-+|| .++.| .....++. .|. +..+..+.+|+.
T Consensus 382 q~GkDL~~v~~vigtGGvL~ha~~~~~~~il~~~~~~~~~~~~L~p~~~~~ 432 (463)
T TIGR01319 382 QIGKDLLNVKCVIGSGGVLSHASQFDMGEILKAGEFDDADARHLKPQEFEY 432 (463)
T ss_pred ccCCCchhCcEEEEeCcceeCCCCcCHHHHHhhhhccCCCccccCCcCCeE
Confidence 34555667889999999 67777 66666644 342 233444555554
No 219
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=26.51 E-value=30 Score=28.87 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=24.4
Q ss_pred EEEEEEEEcCC-ccEEEEEEEcCCCCCCCcccce
Q 008233 505 EINVCMDIDAS-SVLRVLVGVIMPGNPHPVIPVM 537 (573)
Q Consensus 505 ~i~v~~~id~~-g~l~v~~~~~~~g~~~~~~~~~ 537 (573)
...+.|.+|.+ |.+.|++.|..||+-+.-+|..
T Consensus 54 ~~~l~F~vde~~~~~vVkViD~~T~eVIRqIP~E 87 (107)
T PF03646_consen 54 NTSLRFSVDEESGRVVVKVIDKETGEVIRQIPPE 87 (107)
T ss_dssp S--EEEEEEEETTEEEEEEEETTT-SEEEEE-HH
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcEEEeCCcH
Confidence 36788999885 8899999999999987766643
No 220
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=26.36 E-value=3.5e+02 Score=29.10 Aligned_cols=48 Identities=8% Similarity=0.100 Sum_probs=33.8
Q ss_pred EecCCceeEEEEEEEeCCeEEEEEeeccc--cchHHHHHHHHHHHHHhhhhh
Q 008233 231 FNMGAGYCDVTVSATAGGVSQIKALSGSA--IGGEDLLQNMMRHLMPNSESL 280 (573)
Q Consensus 231 ~D~GggT~Dvsv~~~~~~~~~v~~~~g~~--lGG~~iD~~l~~~l~~~~~~~ 280 (573)
+|||..+|-++.+...++.+...+....+ . .|+..-|.+-..++++++
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt~--~dv~~G~~~~a~~~l~~~ 50 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIES--DHLAGGFFNKANEKLNED 50 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccch--hhhhcchHHHHHHHHHHh
Confidence 59999999999999888888888777664 4 355555344444455444
No 221
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=26.23 E-value=1.6e+02 Score=30.44 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=35.3
Q ss_pred CCCeEEEEcCCcCc-HHHHHHHH---hHc--CCccccCCCCCccceehhHHHH
Q 008233 361 DLNDVILVGGCSYI-PKVRNLVQ---STC--KKVELYEGINPLEAAVSGAALE 407 (573)
Q Consensus 361 ~i~~V~LvGG~s~~-p~v~~~l~---~~f--~~~~i~~~~~p~~aVA~GAa~~ 407 (573)
.++.|+++|.+-+. |..++.|. +++ +..+.....+...+-|.||.+.
T Consensus 287 ~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 287 GVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp T--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 57799999998865 78888888 555 3456667778999999999874
No 222
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=25.87 E-value=7.3e+02 Score=25.41 Aligned_cols=99 Identities=18% Similarity=0.137 Sum_probs=52.1
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCCeeee---echhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCceeEEE
Q 008233 165 RNVVLTIPVSFSRFQLTRIERACAMAGLHVLRL---MPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAGYCDVT 241 (573)
Q Consensus 165 ~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~GggT~Dvs 241 (573)
....+|-|.--.+.-|..+.+..-. -+++..| |.--.|-|+.|....-.. ..-+=.|+|-|-|-+-+-
T Consensus 107 h~fLlteppln~penreytaeImfE-sfnvpglyiAVqavLALaaswts~~v~e--------r~ltG~VidsGdgvThvi 177 (415)
T KOG0678|consen 107 HYFLLTEPPLNQPENREYTAEIMFE-SFNVPGLYIAVQAVLALAASWTSRQVGE--------RFLTGIVIDSGDGVTHVI 177 (415)
T ss_pred ceEEecCCCCCCchhhHHHHHhhhh-hccCchHHHHHHHHHHHHHHHHHhhhhh--------heeeeEEEecCCCeeEEE
Confidence 3467888877777777776665422 1333222 122223333333322211 123346899999977554
Q ss_pred EEEEeCCeEEEEEeeccc-cchHHHHHHHHHHHHH
Q 008233 242 VSATAGGVSQIKALSGSA-IGGEDLLQNMMRHLMP 275 (573)
Q Consensus 242 v~~~~~~~~~v~~~~g~~-lGG~~iD~~l~~~l~~ 275 (573)
.+ ..| +-+.+.-... +.|++++.-+...+.+
T Consensus 178 pv--aEg-yVigScik~iPiagrdiT~fiQ~llRe 209 (415)
T KOG0678|consen 178 PV--AEG-YVIGSCIKHIPIAGRDITYFIQQLLRE 209 (415)
T ss_pred Ee--ecc-eEEeeeeccccccCCchhHHHHHHhhC
Confidence 33 333 2223323333 9999998766665543
No 223
>PRK08868 flagellar protein FlaG; Provisional
Probab=25.81 E-value=61 Score=28.69 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=28.4
Q ss_pred EEEEEEEEcCC-ccEEEEEEEcCCCCCCCccccee
Q 008233 505 EINVCMDIDAS-SVLRVLVGVIMPGNPHPVIPVME 538 (573)
Q Consensus 505 ~i~v~~~id~~-g~l~v~~~~~~~g~~~~~~~~~~ 538 (573)
...+.|++|.+ |.+.|++.|..||.-+.-+|..+
T Consensus 88 n~~L~F~vdeetgr~VVkViD~~T~EVIRQIP~Ee 122 (144)
T PRK08868 88 NKGLSFRVDEESGRDVVTIYEASTGDIIRQIPDEE 122 (144)
T ss_pred cCceEEEEecCCCCEEEEEEECCCCceeeeCCCHH
Confidence 36788999986 89999999999999888777543
No 224
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.57 E-value=1.5e+02 Score=28.92 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCCCCCCCceEEeecccceeEEEecCC
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGN 440 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~~igi~~~~~ 440 (573)
.|..++.-|=...+|++-++.+ .|. +...|+ -.|-|++|..+++ ..++++.|+++.++.+-+.+|
T Consensus 109 gipa~liPGlHr~~~clD~rfr-vfS-----H~aSpE---Klgiay~a~~~~g------~ed~VvsDiSSNTVtllvkdG 173 (332)
T COG4020 109 GIPAYLIPGLHRGLPCLDERFR-VFS-----HVASPE---KLGIAYLAYLLSG------SEDFVVSDISSNTVTLLVKDG 173 (332)
T ss_pred CCCeeecccccCCCcccChhhh-hhh-----ccCCHH---HhhHHHHHHHHcC------ccceEEEeccCCeEEEEEEcC
Confidence 3557777777888888888777 551 122344 3799999999888 478999999999999988776
Q ss_pred eE
Q 008233 441 NF 442 (573)
Q Consensus 441 ~~ 442 (573)
+.
T Consensus 174 kv 175 (332)
T COG4020 174 KV 175 (332)
T ss_pred eE
Confidence 53
No 225
>PLN02192 3-ketoacyl-CoA synthase
Probab=25.37 E-value=1.4e+02 Score=32.59 Aligned_cols=54 Identities=19% Similarity=0.184 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcC-CcCcHHHHHHHHhHcC
Q 008233 333 FEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGG-CSYIPKVRNLVQSTCK 386 (573)
Q Consensus 333 fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG-~s~~p~v~~~l~~~f~ 386 (573)
+++..++...-+...++++|+++++++++||.|+.... ....|.+-.+|.+.++
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lG 223 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYK 223 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhC
Confidence 33444444445667788999999999999999876532 3357999999999994
No 226
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=25.32 E-value=66 Score=28.48 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=45.7
Q ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehh
Q 008233 324 VSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSG 403 (573)
Q Consensus 324 ~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~G 403 (573)
+++-|=..+|.+ .+.+++.+-..+.|.+.+.+.+++ .++-|=|+-.+|+.-+.+.+. .+.|-.|+.|
T Consensus 8 ~ri~IV~s~fn~---~I~~~Ll~ga~~~l~~~gv~~~~i-~v~~VPGa~EiP~a~~~l~~s---------~~~DavIaLG 74 (141)
T PLN02404 8 LRFGVVVARFNE---IITKNLLEGALETFKRYSVKEENI-DVVWVPGSFEIPVVAQRLAKS---------GKYDAILCIG 74 (141)
T ss_pred CEEEEEEecCcH---HHHHHHHHHHHHHHHHcCCCccce-EEEEcCcHHHHHHHHHHHHhc---------CCCCEEEEEE
Confidence 334333344443 445555666667777888776655 566788899999998887642 2356666666
Q ss_pred HHHHh
Q 008233 404 AALEG 408 (573)
Q Consensus 404 Aa~~a 408 (573)
|.+.+
T Consensus 75 ~VIrG 79 (141)
T PLN02404 75 AVIRG 79 (141)
T ss_pred EEEeC
Confidence 66544
No 227
>PLN02854 3-ketoacyl-CoA synthase
Probab=25.04 E-value=1.3e+02 Score=32.81 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCCcCCCCeEEE-EcCCcCcHHHHHHHHhHcC
Q 008233 342 EKCGSLITQCLHDAKVEIEDLNDVIL-VGGCSYIPKVRNLVQSTCK 386 (573)
Q Consensus 342 ~~~~~~i~~~l~~~~~~~~~i~~V~L-vGG~s~~p~v~~~l~~~f~ 386 (573)
.-+...++++|+++++++++||.|++ +.+....|.+-.+|.+.++
T Consensus 190 ~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 190 AVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 33456778889999999999999987 3444457999999999994
No 228
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=24.79 E-value=62 Score=34.55 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=19.5
Q ss_pred CCeEEEEEcCccceEEEEE-eCCcE
Q 008233 25 PEIAIGIDIGTSQCSIAFW-NGSEV 48 (573)
Q Consensus 25 ~~~vvGIDfGTt~s~va~~-~~~~~ 48 (573)
+..+++||-|||.+++.++ .++++
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~i 28 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNI 28 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCc
Confidence 5699999999999998888 44443
No 229
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=24.53 E-value=72 Score=31.12 Aligned_cols=46 Identities=22% Similarity=0.154 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCc
Q 008233 329 TREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYI 374 (573)
Q Consensus 329 tr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~ 374 (573)
-++.-+.+-.-++......|+..+++.......--.|+++||.++.
T Consensus 174 g~~T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~~~vi~TGG~a~~ 219 (243)
T TIGR00671 174 GKSTREAVQSGAVYGVLGLIQGLLKDWKKYFKRKFAVVITGGDGKY 219 (243)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchHh
Confidence 3455566666666666666666665532111111269999999876
No 230
>PRK13324 pantothenate kinase; Reviewed
Probab=24.36 E-value=78 Score=31.21 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=17.5
Q ss_pred EEEEEcCccceEEEEEeCCc
Q 008233 28 AIGIDIGTSQCSIAFWNGSE 47 (573)
Q Consensus 28 vvGIDfGTt~s~va~~~~~~ 47 (573)
++.||.|+|+++.+++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999997544
No 231
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=24.14 E-value=3.9e+02 Score=28.96 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=33.6
Q ss_pred cEEEEEecCCceeEEEEEEEeCCeE-EEEEeeccc-cchHHHHHHHH
Q 008233 226 KIAVIFNMGAGYCDVTVSATAGGVS-QIKALSGSA-IGGEDLLQNMM 270 (573)
Q Consensus 226 ~~vlV~D~GggT~Dvsv~~~~~~~~-~v~~~~g~~-lGG~~iD~~l~ 270 (573)
.+=+.+|+|..++-..++....+.+ ....+.... -||+++|.+..
T Consensus 164 ~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 164 AYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 3447799999999999999987644 444445555 99999997643
No 232
>PF13941 MutL: MutL protein
Probab=23.82 E-value=1.7e+02 Score=31.42 Aligned_cols=46 Identities=15% Similarity=0.315 Sum_probs=34.7
Q ss_pred EEEEecCCceeEEEEEEEeCCeEEEEEeeccc--cchHHHHHHHHHHH
Q 008233 228 AVIFNMGAGYCDVTVSATAGGVSQIKALSGSA--IGGEDLLQNMMRHL 273 (573)
Q Consensus 228 vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~--lGG~~iD~~l~~~l 273 (573)
+|++|||..+|-++++....+..++++....+ +.-.|+..-+.+-+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~ 49 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL 49 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH
Confidence 79999999999999999888888888877666 52235555554433
No 233
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=23.69 E-value=95 Score=30.99 Aligned_cols=44 Identities=20% Similarity=0.448 Sum_probs=30.3
Q ss_pred ccEEEEEecCCceeEEEEEEEeCCeEEEEEeeccccchHHHHHHHHHHHH
Q 008233 225 EKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSAIGGEDLLQNMMRHLM 274 (573)
Q Consensus 225 ~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~lGG~~iD~~l~~~l~ 274 (573)
-..++++++|.| +|++.+.+. +..-..|..+||-.|= -|..+|.
T Consensus 100 ~~p~llvnIGsG---vSi~~v~~~--~~~Rv~Gt~iGGGTf~-GL~~LL~ 143 (279)
T TIGR00555 100 IYPYLLVNIGTG---TSILYVDGD--NYERVGGTSLGGGTFL-GLGKLLT 143 (279)
T ss_pred CCceEEEEecCC---eEEEEEcCc--cEEEEcCccccHHHHH-HHHHHHc
Confidence 467899999887 678888765 3344455557776665 7777665
No 234
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=23.39 E-value=81 Score=30.90 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=17.7
Q ss_pred EEEEEcCccceEEEEEeCCcE
Q 008233 28 AIGIDIGTSQCSIAFWNGSEV 48 (573)
Q Consensus 28 vvGIDfGTt~s~va~~~~~~~ 48 (573)
.+.||.|+|+++.|++.++++
T Consensus 2 ~L~iDiGNT~~~~a~~~~~~~ 22 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGGKV 22 (251)
T ss_pred eEEEEeCCCeEEEEEecCCeE
Confidence 589999999999999875543
No 235
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=23.14 E-value=1.3e+02 Score=26.78 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=0.0
Q ss_pred CeEEEEEcCccceEEEEE--eCCcEEEEe
Q 008233 26 EIAIGIDIGTSQCSIAFW--NGSEVELIK 52 (573)
Q Consensus 26 ~~vvGIDfGTt~s~va~~--~~~~~~ii~ 52 (573)
+.+++||.|+-|...++. .++.+.++.
T Consensus 1 mii~sIDiGikNlA~~iie~~~~~i~~~~ 29 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEFEGNKIRVID 29 (143)
T ss_pred CeEEEEecCCCceeEEEEEcCCCeEEEEE
No 236
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=22.74 E-value=51 Score=35.62 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=14.7
Q ss_pred EEEEcCccceEEEEEe
Q 008233 29 IGIDIGTSQCSIAFWN 44 (573)
Q Consensus 29 vGIDfGTt~s~va~~~ 44 (573)
+|||+|||++++++++
T Consensus 1 lgIDiGtt~ik~~l~d 16 (481)
T TIGR01312 1 LGIDLGTSGVKALLVD 16 (481)
T ss_pred CceeecCcceEEEEEC
Confidence 6999999999999984
No 237
>PRK00292 glk glucokinase; Provisional
Probab=22.72 E-value=83 Score=31.88 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=16.6
Q ss_pred eEEEEEcCccceEEEEEe
Q 008233 27 IAIGIDIGTSQCSIAFWN 44 (573)
Q Consensus 27 ~vvGIDfGTt~s~va~~~ 44 (573)
.++|||+|.|++.+++.+
T Consensus 3 ~~lgiDIGgT~i~~~l~~ 20 (316)
T PRK00292 3 PALVGDIGGTNARFALCD 20 (316)
T ss_pred eEEEEEcCccceEEEEEe
Confidence 589999999999999985
No 238
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=22.51 E-value=15 Score=33.34 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=19.5
Q ss_pred CCCCeEEEEEcCccceEEEEEeCCc
Q 008233 23 PFPEIAIGIDIGTSQCSIAFWNGSE 47 (573)
Q Consensus 23 ~~~~~vvGIDfGTt~s~va~~~~~~ 47 (573)
|.-.-++|+|+||+|++++...+.+
T Consensus 54 p~~~d~~g~~~gt~n~~~~~~e~~k 78 (213)
T PLN00130 54 PVVNDILGTGLGTNNAIREEREKSK 78 (213)
T ss_pred CCccceeccCCCcchHHHHHHhccc
Confidence 4445799999999999988775433
No 239
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=22.40 E-value=1.3e+02 Score=26.89 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=44.7
Q ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehh
Q 008233 324 VSKNVTREEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSG 403 (573)
Q Consensus 324 ~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~G 403 (573)
..+-|=..+|... +.+++.+-..+++.+.+...++| .|+.|=|+-.+|++.+.|.+.= +-|-.|+.|
T Consensus 13 ~riaIV~arfn~~---I~d~ll~gA~~~l~~~G~~~~~i-~vv~VPGa~EiPl~a~~La~~~---------~yDAvv~lG 79 (152)
T COG0054 13 LRIAIVVARFNDD---ITDALLEGAVDALKRHGADVDNI-DVVRVPGAFEIPLAAKKLARTG---------KYDAVVALG 79 (152)
T ss_pred ceEEEEEeehhHH---HHHHHHHHHHHHHHHcCCCcccc-eEEEeCCcchhHHHHHHHHhcC---------CcceEEEEe
Confidence 4555555666643 34444555556666666555444 5788999999999988886653 244555555
Q ss_pred HHHHh
Q 008233 404 AALEG 408 (573)
Q Consensus 404 Aa~~a 408 (573)
+++.+
T Consensus 80 ~VIrG 84 (152)
T COG0054 80 AVIRG 84 (152)
T ss_pred eEEeC
Confidence 55544
No 240
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=22.32 E-value=98 Score=29.22 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=16.9
Q ss_pred EEEEEcCccceEEEEEeCCcE
Q 008233 28 AIGIDIGTSQCSIAFWNGSEV 48 (573)
Q Consensus 28 vvGIDfGTt~s~va~~~~~~~ 48 (573)
++-||.|+|+++++++.+++.
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTEE
T ss_pred CEEEEECCCeEEEEEEECCEE
Confidence 478999999999999977753
No 241
>PLN03171 chalcone synthase-like protein; Provisional
Probab=21.72 E-value=2.9e+02 Score=29.11 Aligned_cols=54 Identities=11% Similarity=0.125 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCC-cCcHHHHHHHHhHcC
Q 008233 333 FEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILVGGC-SYIPKVRNLVQSTCK 386 (573)
Q Consensus 333 fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~-s~~p~v~~~l~~~f~ 386 (573)
++...+...+-..+..+++|+++++++++||.|+++-.+ -.+|..--.|.+.++
T Consensus 101 ~~~~~~~a~~la~~Aa~~aL~~ag~~~~dId~li~~t~t~~~~P~~a~~v~~~LG 155 (399)
T PLN03171 101 LDIAADAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHIPGVDFRLVPLLG 155 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCchHHHHHHHhC
Confidence 333344566667788999999999999999999983222 237888888998884
No 242
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=21.36 E-value=2.7e+02 Score=26.72 Aligned_cols=45 Identities=11% Similarity=-0.052 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCCCcCCCCeEEEEcCCcC--cHHHHHHHHhHcCC
Q 008233 343 KCGSLITQCLHDAKVEIEDLNDVILVGGCSY--IPKVRNLVQSTCKK 387 (573)
Q Consensus 343 ~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~--~p~v~~~l~~~f~~ 387 (573)
-....++++|+++++++++|+.|++...... .|.....|...++-
T Consensus 10 l~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~ 56 (254)
T cd00327 10 LGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI 56 (254)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCC
Confidence 3456778899999999999999987665444 58888889988843
No 243
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=21.03 E-value=5.9e+02 Score=27.53 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=23.3
Q ss_pred CccEEEEEecCCceeEEEEEEEeCCe
Q 008233 224 SEKIAVIFNMGAGYCDVTVSATAGGV 249 (573)
Q Consensus 224 ~~~~vlV~D~GggT~Dvsv~~~~~~~ 249 (573)
..+.+|.+|+||..+-+..+.+.++.
T Consensus 84 E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 84 EKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred cCCCEEEEecCCCceEEEEEEecCCc
Confidence 47889999999999999999998773
No 244
>PRK09557 fructokinase; Reviewed
Probab=20.86 E-value=3.5e+02 Score=26.98 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=25.3
Q ss_pred cCCCeeeeechhHHHHHHHHHhhcccccccCCCCCccEEEEEecCCc
Q 008233 190 AGLHVLRLMPEPTAVALLYAQQQQQSVHENLGSGSEKIAVIFNMGAG 236 (573)
Q Consensus 190 AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~vlV~D~Ggg 236 (573)
.|++ +.+.|+..|+|++-....... ..++++.+.+|.|
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~~--------~~~~~~~l~igtG 133 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAAA--------GKQTVFAVIIGTG 133 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcccC--------CCCcEEEEEEccc
Confidence 3775 578999999998765433221 2567777778744
No 245
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.79 E-value=3.4e+02 Score=27.44 Aligned_cols=67 Identities=10% Similarity=0.124 Sum_probs=47.1
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHHHhHHhcCCCCCCCCCceEEeecccceeEEEecCCe
Q 008233 362 LNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNN 441 (573)
Q Consensus 362 i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~~igi~~~~~~ 441 (573)
|..|+.-|=...+|++-.+++..|. +...|+ -.|-|++|....+ .+++++.|+++.++.+-+.+|+
T Consensus 103 ipav~iPGlH~~~~~~D~rfra~yS-----H~aSpE---Ki~iay~a~~~~~------~~~~ivsDiSSNTVtlaVk~GK 168 (326)
T TIGR03281 103 IPAVLIPGLHRGSPCLDPRFRAVYS-----HIASPE---KVSIAYNAYCLTG------FKDFIVSDISSNTVTLLIKDGK 168 (326)
T ss_pred CCEEEcccccCCCcccCHHHHHHhc-----ccCCHH---HHHHHHHHHHHcC------CCCEEEEecCCCeEEEEEECCE
Confidence 4466666666666666666665551 122344 3799999987665 4799999999999999888765
Q ss_pred E
Q 008233 442 F 442 (573)
Q Consensus 442 ~ 442 (573)
.
T Consensus 169 I 169 (326)
T TIGR03281 169 I 169 (326)
T ss_pred E
Confidence 3
No 246
>PLN02932 3-ketoacyl-CoA synthase
Probab=20.68 E-value=2.1e+02 Score=31.05 Aligned_cols=56 Identities=7% Similarity=0.150 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEE-cCCcCcHHHHHHHHhHcC
Q 008233 331 EEFEEVNQKVFEKCGSLITQCLHDAKVEIEDLNDVILV-GGCSYIPKVRNLVQSTCK 386 (573)
Q Consensus 331 ~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~Lv-GG~s~~p~v~~~l~~~f~ 386 (573)
..++...++.-.-+.+.++++|+++++++++||.|+++ ....-.|.+-.+|.+.++
T Consensus 139 ~~~~~~~~ea~~la~~Aa~~aL~~agi~p~dId~lIv~tst~~~~Pslaa~V~~~lG 195 (478)
T PLN02932 139 QNLAVSRKETEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFNPTPSLSSILVNKFK 195 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCCcHHHHHHHHhC
Confidence 34555555555566778899999999999999998763 334478999999999994
No 247
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=20.65 E-value=2.7e+02 Score=27.87 Aligned_cols=50 Identities=22% Similarity=0.217 Sum_probs=30.3
Q ss_pred eEEEEcCCcC-cHHHHHHHHhHcCCc---cccCCCCCccceehhHHHHhHHhcC
Q 008233 364 DVILVGGCSY-IPKVRNLVQSTCKKV---ELYEGINPLEAAVSGAALEGAVTSG 413 (573)
Q Consensus 364 ~V~LvGG~s~-~p~v~~~l~~~f~~~---~i~~~~~p~~aVA~GAa~~a~~~~~ 413 (573)
.|++|||.-. ...+++-........ +-.....|.+.-|.|||++|+.+.+
T Consensus 266 ~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 266 PIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred eEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhcc
Confidence 6999999544 344444332222111 1122346788999999999997665
No 248
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=20.57 E-value=1.3e+02 Score=29.44 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCccccCCCCCccceehhHHH
Q 008233 361 DLNDVILVGGCSYIPKVRNLVQSTCKKVELYEGINPLEAAVSGAAL 406 (573)
Q Consensus 361 ~i~~V~LvGG~s~~p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~ 406 (573)
++|.|+ =|++..|++.+.+++.+|. .+ .-+||.+++|+=+.-
T Consensus 172 ~~d~lI--LGCTh~P~l~~~i~~~~~~-~v-~~IDp~~~la~~~~~ 213 (251)
T TIGR00067 172 LPDTVV--LGCTHFPLLKEEIEQYLPE-HV-RLVDSGVHTARRTAW 213 (251)
T ss_pred CCCEEE--ECcCChHHHHHHHHHHcCC-Cc-EEECCHHHHHHHHHH
Confidence 456654 4999999999999999943 22 356888777775553
No 249
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=20.53 E-value=50 Score=35.48 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=14.5
Q ss_pred EEEEcCccceEEEEEe
Q 008233 29 IGIDIGTSQCSIAFWN 44 (573)
Q Consensus 29 vGIDfGTt~s~va~~~ 44 (573)
+|||+|||+++++++.
T Consensus 1 ~aiD~Gtt~~k~~l~~ 16 (454)
T TIGR02627 1 VAVDLGASSGRVMLAS 16 (454)
T ss_pred CcEeccCCchheEEEE
Confidence 5899999999999884
No 250
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=20.45 E-value=1.2e+02 Score=26.80 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=18.1
Q ss_pred CeEEEEEcCccc-----eEEEEEeCCc
Q 008233 26 EIAIGIDIGTSQ-----CSIAFWNGSE 47 (573)
Q Consensus 26 ~~vvGIDfGTt~-----s~va~~~~~~ 47 (573)
.-+++|||-|++ ++.|+.+++.
T Consensus 2 ~~~LslD~STs~~~~~gTG~A~~~~~~ 28 (159)
T PF07066_consen 2 KKVLSLDFSTSSKKGEGTGWAFFKGSD 28 (159)
T ss_pred CeeEEEEEecccCCCCCceeEEecCCe
Confidence 468999999998 9888877554
No 251
>PRK07738 flagellar protein FlaG; Provisional
Probab=20.36 E-value=95 Score=26.52 Aligned_cols=32 Identities=13% Similarity=0.020 Sum_probs=27.2
Q ss_pred EEEEEEEcCC-ccEEEEEEEcCCCCCCCcccce
Q 008233 506 INVCMDIDAS-SVLRVLVGVIMPGNPHPVIPVM 537 (573)
Q Consensus 506 i~v~~~id~~-g~l~v~~~~~~~g~~~~~~~~~ 537 (573)
..+.|++|.+ |.+.|++.|..||.-+.-+|..
T Consensus 64 ~~L~F~vdeet~~~vVkVvD~~T~EVIRQIPpE 96 (117)
T PRK07738 64 TSLKFELHEKLNEYYVQVVDERTNEVIREIPPK 96 (117)
T ss_pred CceEEEEecCCCcEEEEEEECCCCeeeeeCCCH
Confidence 5788999985 9999999999999988776653
No 252
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=20.02 E-value=1.9e+02 Score=30.57 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=30.9
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHcCCCeeeeechhHH-HHHHHHHhh
Q 008233 164 IRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTA-VALLYAQQQ 212 (573)
Q Consensus 164 ~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~A-Aal~y~~~~ 212 (573)
+.++|++-|..-+-.---.+.-||+++|.+.+--+--..| ||++|+.+.
T Consensus 137 V~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTet 186 (412)
T PF00815_consen 137 VKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTET 186 (412)
T ss_dssp -SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--SS
T ss_pred CCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCCC
Confidence 4788998898765555678899999999999888888887 678998654
Done!