Your job contains 1 sequence.
>008235
MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT
LDDPFNDRYDKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQT
KEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKSCANGHHGQACEKLDCPSKFLI
LCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATA
ADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQIT
GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPH
TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQV
LDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGR
KRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDD
AAHAGQMIEILEQCGQVVPDALRDLCHTSPMLE
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008235
(573 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2065494 - symbol:AT2G28600 species:3702 "Arabi... 936 5.7e-107 3
UNIPROTKB|I3LR20 - symbol:DDX46 "Uncharacterized protein"... 169 9.5e-09 2
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"... 169 9.5e-09 2
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"... 169 9.5e-09 2
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R... 169 1.2e-08 2
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 165 1.5e-08 1
MGI|MGI:1920895 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) bo... 169 1.9e-08 2
ASPGD|ASPL0000055571 - symbol:AN1266 species:162425 "Emer... 165 1.9e-08 1
RGD|708480 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box pol... 169 2.4e-08 2
UNIPROTKB|Q62780 - symbol:Ddx46 "Probable ATP-dependent R... 169 2.4e-08 2
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"... 160 5.8e-08 1
DICTYBASE|DDB_G0292010 - symbol:DDB_G0292010 species:4468... 125 1.0e-06 3
POMBASE|SPCC10H11.01 - symbol:prp11 "ATP-dependent RNA he... 143 4.0e-06 1
ZFIN|ZDB-GENE-030131-667 - symbol:ddx46 "DEAD (Asp-Glu-Al... 147 9.4e-06 2
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 110 1.5e-05 2
TAIR|locus:2034481 - symbol:STRS1 "STRESS RESPONSE SUPPRE... 112 3.1e-05 3
ZFIN|ZDB-GENE-050706-53 - symbol:ddx42 "DEAD (Asp-Glu-Ala... 94 3.2e-05 2
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 131 5.1e-05 1
UNIPROTKB|A4RN46 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 132 6.2e-05 1
DICTYBASE|DDB_G0275443 - symbol:helB1 "putative RNA splic... 130 0.00012 1
WB|WBGene00013214 - symbol:Y54G11A.3 species:6239 "Caenor... 124 0.00018 1
WB|WBGene00010260 - symbol:F58E10.3 species:6239 "Caenorh... 104 0.00024 2
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 109 0.00033 2
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 123 0.00043 1
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 109 0.00066 2
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 109 0.00066 2
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 109 0.00066 2
UNIPROTKB|F1NVJ6 - symbol:DDX43 "Uncharacterized protein"... 120 0.00070 1
ZFIN|ZDB-GENE-080204-77 - symbol:ddx43 "DEAD (Asp-Glu-Ala... 104 0.00071 2
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 109 0.00087 2
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 109 0.00087 2
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 109 0.00089 2
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 109 0.00089 2
>TAIR|locus:2065494 [details] [associations]
symbol:AT2G28600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0000741 "karyogamy" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524
EMBL:CP002685 GO:GO:0003676 GO:GO:0008026 EMBL:AC007171
EMBL:BT006065 IPI:IPI00521844 PIR:H84686 RefSeq:NP_180427.1
UniGene:At.38601 ProteinModelPortal:Q9SIB5 STRING:Q9SIB5
PRIDE:Q9SIB5 EnsemblPlants:AT2G28600.1 GeneID:817408
KEGG:ath:AT2G28600 TAIR:At2g28600 InParanoid:Q9SIB5 OMA:MCFSLPT
PhylomeDB:Q9SIB5 ProtClustDB:CLSN2683676 Genevestigator:Q9SIB5
Uniprot:Q9SIB5
Length = 502
Score = 936 (334.5 bits), Expect = 5.7e-107, Sum P(3) = 5.7e-107
Identities = 197/413 (47%), Positives = 274/413 (66%)
Query: 167 QACEKLDCPSKFLILCLNAIENAMRHD---GVEQDNPLFVNSWGIEFWKCYSSAKDILET 223
+ EK+D P KFL+L LN IE++ R D + D LF +SWGIEFWKCYSS DIL+T
Sbjct: 98 EGVEKMDGPPKFLMLNLNEIESSFRKDITYSEQHDKSLFTSSWGIEFWKCYSSGNDILDT 157
Query: 224 SGSSSTIVQIAWIVATAADSIARKEK----EGFSFTG--PFLLFLVSSQEKAAKVRSVCK 277
SG SST+ QIAWIV+TAAD+IAR+EK E G PFLL+LV SQ KA++VRSVCK
Sbjct: 158 SGMSSTVEQIAWIVSTAADAIARREKDEVEEEEELLGNSPFLLYLVPSQSKASQVRSVCK 217
Query: 278 PLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIXXXXXXXXXXX 337
LK GIHTVSLH GA +DHQI+GL+S EPEF+V+TPERLL++V+LK +
Sbjct: 218 ALKGIGIHTVSLHQGAPLDHQISGLKSVEPEFIVATPERLLEIVTLKGVDISNVSLLVID 277
Query: 338 XXXXXXKGDTLSL---IRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA 394
G L+ I+Q+IS K T+VFN+ + + +PAVQ+ L GS+NR+++N+SVA
Sbjct: 278 ELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFSASIIPAVQSFLGGSVNRVTVNESVA 337
Query: 395 SQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLK 454
SQ +CI Q+V+VCAS+E+K+ K + H S K++YIV K+ F+ +++ LK
Sbjct: 338 SQGSCITQTVSVCASEEKKLQK--------FAKHLDSSSSKLIYIVTKEESFKKIMAILK 389
Query: 455 CKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMK 514
KG S+ST S+ +S +K S ++P +ID + + T + + E V++PDF S++
Sbjct: 390 LKGISVSTSSDSKLSEVKKS------RKPVAHLIDFEQLDTTVMRDSETVLLPDFFPSIE 443
Query: 515 NYVEILTSMARHTVSGILHSFFTKDDAA--HAGQMIEILEQCGQVVPDALRDL 565
Y +ILTSMAR + G+LHS+ T+ DAA AG ++ +LE CGQ VPD R++
Sbjct: 444 IYTQILTSMARESAHGVLHSYITEKDAASYQAGPLVNVLENCGQNVPDRWRNM 496
Score = 98 (39.6 bits), Expect = 5.7e-107, Sum P(3) = 5.7e-107
Identities = 21/68 (30%), Positives = 24/68 (35%)
Query: 1 MTKGDDAVMXXXXXXXXXXXXXXXTXXXXXXXXXXXXXXXXXXXXXXXXQCQGMCFSLPT 60
M KGDD V CQGMCF+LPT
Sbjct: 1 MAKGDDNVQRKKNKVTRKKMSRKNDTATVSARIAAIIAAKKRRKSGKRSMCQGMCFTLPT 60
Query: 61 LDDPFNDR 68
L+DPFN+R
Sbjct: 61 LEDPFNER 68
Score = 58 (25.5 bits), Expect = 5.7e-107, Sum P(3) = 5.7e-107
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 111 NEKPGHLEQTKEKAIN--LKNSQDK--SLLFIDGVEKRTGNVERAEVHLN 156
NE+ G + TK+K +K+ +DK S + I+GVEK G + ++LN
Sbjct: 66 NERQGKADITKKKKKKKKVKSREDKKPSPMSIEGVEKMDGPPKFLMLNLN 115
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 169 (64.5 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 90/415 (21%), Positives = 169/415 (40%)
Query: 166 GQACEKLDCPSKFLILCLNAIE--NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL-- 221
G+ C K P K + C +++ N+++ G E+ P + + I S +D++
Sbjct: 364 GKGCPK---PIKSWVQCGISMKILNSLKKHGYEKPTP--IQTQAIP---AIMSGRDLIGI 415
Query: 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280
+GS TI + + D R +EG GP + + ++E A ++ CK K
Sbjct: 416 AKTGSGKTIAFLLPMFRHIMDQ--RSLEEG---EGPIAVIMTPTRELALQITKECKKFSK 470
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIXXXXXXXXXXXXXX 340
G+ V ++ G I QI L+ E +V TP R++ +++ +
Sbjct: 471 TLGLRVVCVYGGTGISEQIAELKR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLD 529
Query: 341 XXXK----GDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA 394
+ G ++R + +P TV+F+ T+ P L I + V
Sbjct: 530 EADRMFDMGFEPQVMRIVDNVRPDRQTVMFS--ATF---PRAMEALARRILSKPIEVQVG 584
Query: 395 SQSA-CI-IQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVST 452
+S C ++ + +E+K LK +++L H + E V+ V K L+
Sbjct: 585 GRSVVCSDVEQQVIVIEEEKKFLKLLELLGH------YQESGSVIIFVDKQEHADGLLKD 638
Query: 453 LKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIIS 512
L Y + I + ++S+ D K ++ ++ L+ +++V ++
Sbjct: 639 LMRASYPCMSLHGGIDQYDRDSIINDF-KNGTCKLLVATSVAARGLDVKHLILVVNYSCP 697
Query: 513 --MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV R G ++F T+D A +AG +I+ LE G VP L L
Sbjct: 698 NHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKL 752
Score = 46 (21.3 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 102 SKK-ETKRDNNEKPGHLEQTKEKAINLKNSQDKSLLFIDGVEKRTGNVER 150
SKK E + + EK E +KEK K+ DK D EK GN ++
Sbjct: 111 SKKAENRSRSKEKTDSGESSKEKK---KDKDDKE----DEKEKDAGNFDQ 153
Score = 43 (20.2 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 20/67 (29%), Positives = 28/67 (41%)
Query: 96 KGKSAVSKKETKRDNNEKPGHLEQTKEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHL 155
K S S KE K+D ++K E KEK + N L + + KR VE+
Sbjct: 123 KTDSGESSKEKKKDKDDK----EDEKEK--DAGNFDQNKLE--EEMRKRKERVEKWREEQ 174
Query: 156 NGKSCAN 162
K+ N
Sbjct: 175 RKKAMEN 181
Score = 40 (19.1 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 89 KNKNAFVKGKSAVSKK---ETKRDNNEKP-GHLEQTK 121
++K G+S+ KK + K D EK G+ +Q K
Sbjct: 119 RSKEKTDSGESSKEKKKDKDDKEDEKEKDAGNFDQNK 155
Score = 37 (18.1 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 88 DKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQTKEKAINLKNSQDKS 134
D+ ++ + + S+ +R + PG+ ++K KA N S++K+
Sbjct: 81 DRRRSRSRDRRRSRSRSRGRRSRSSSPGN--KSK-KAENRSRSKEKT 124
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 169 (64.5 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 90/415 (21%), Positives = 169/415 (40%)
Query: 166 GQACEKLDCPSKFLILCLNAIE--NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL-- 221
G+ C K P K + C +++ N+++ G E+ P + + I S +D++
Sbjct: 364 GKGCPK---PIKSWVQCGISMKILNSLKKHGYEKPTP--IQTQAIP---AIMSGRDLIGI 415
Query: 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280
+GS TI + + D R +EG GP + + ++E A ++ CK K
Sbjct: 416 AKTGSGKTIAFLLPMFRHIMDQ--RSLEEG---EGPIAVIMTPTRELALQITKECKKFSK 470
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIXXXXXXXXXXXXXX 340
G+ V ++ G I QI L+ E +V TP R++ +++ +
Sbjct: 471 TLGLRVVCVYGGTGISEQIAELKR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLD 529
Query: 341 XXXK----GDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA 394
+ G ++R + +P TV+F+ T+ P L I + V
Sbjct: 530 EADRMFDMGFEPQVMRIVDNVRPDRQTVMFS--ATF---PRAMEALARRILSKPIEVQVG 584
Query: 395 SQSA-CI-IQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVST 452
+S C ++ + +E+K LK +++L H + E V+ V K L+
Sbjct: 585 GRSVVCSDVEQQVIVIEEEKKFLKLLELLGH------YQESGSVIIFVDKQEHADGLLKD 638
Query: 453 LKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIIS 512
L Y + I + ++S+ D K ++ ++ L+ +++V ++
Sbjct: 639 LMRASYPCMSLHGGIDQYDRDSIINDF-KNGTCKLLVATSVAARGLDVKHLILVVNYSCP 697
Query: 513 --MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV R G ++F T+D A +AG +I+ LE G VP L L
Sbjct: 698 NHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKL 752
Score = 46 (21.3 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 102 SKK-ETKRDNNEKPGHLEQTKEKAINLKNSQDKSLLFIDGVEKRTGNVER 150
SKK E + + EK E +KEK K+ DK D EK GN ++
Sbjct: 111 SKKAENRSRSKEKTDSGESSKEKK---KDKDDKE----DEKEKDAGNFDQ 153
Score = 43 (20.2 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 20/67 (29%), Positives = 28/67 (41%)
Query: 96 KGKSAVSKKETKRDNNEKPGHLEQTKEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHL 155
K S S KE K+D ++K E KEK + N L + + KR VE+
Sbjct: 123 KTDSGESSKEKKKDKDDK----EDEKEK--DAGNFDQNKLE--EEMRKRKERVEKWREEQ 174
Query: 156 NGKSCAN 162
K+ N
Sbjct: 175 RKKAMEN 181
Score = 40 (19.1 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 89 KNKNAFVKGKSAVSKK---ETKRDNNEKP-GHLEQTK 121
++K G+S+ KK + K D EK G+ +Q K
Sbjct: 119 RSKEKTDSGESSKEKKKDKDDKEDEKEKDAGNFDQNK 155
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 169 (64.5 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 90/415 (21%), Positives = 169/415 (40%)
Query: 166 GQACEKLDCPSKFLILCLNAIE--NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL-- 221
G+ C K P K + C +++ N+++ G E+ P + + I S +D++
Sbjct: 364 GKGCPK---PIKSWVQCGISMKILNSLKKHGYEKPTP--IQTQAIP---AIMSGRDLIGI 415
Query: 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280
+GS TI + + D R +EG GP + + ++E A ++ CK K
Sbjct: 416 AKTGSGKTIAFLLPMFRHIMDQ--RSLEEG---EGPIAVIMTPTRELALQITKECKKFSK 470
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIXXXXXXXXXXXXXX 340
G+ V ++ G I QI L+ E +V TP R++ +++ +
Sbjct: 471 TLGLRVVCVYGGTGISEQIAELKR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLD 529
Query: 341 XXXK----GDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA 394
+ G ++R + +P TV+F+ T+ P L I + V
Sbjct: 530 EADRMFDMGFEPQVMRIVDNVRPDRQTVMFS--ATF---PRAMEALARRILSKPIEVQVG 584
Query: 395 SQSA-CI-IQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVST 452
+S C ++ + +E+K LK +++L H + E V+ V K L+
Sbjct: 585 GRSVVCSDVEQQVIVIEEEKKFLKLLELLGH------YQESGSVIIFVDKQEHADGLLKD 638
Query: 453 LKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIIS 512
L Y + I + ++S+ D K ++ ++ L+ +++V ++
Sbjct: 639 LMRASYPCMSLHGGIDQYDRDSIINDF-KNGTCKLLVATSVAARGLDVKHLILVVNYSCP 697
Query: 513 --MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV R G ++F T+D A +AG +I+ LE G VP L L
Sbjct: 698 NHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKL 752
Score = 46 (21.3 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 102 SKK-ETKRDNNEKPGHLEQTKEKAINLKNSQDKSLLFIDGVEKRTGNVER 150
SKK E + + EK E +KEK K+ DK D EK GN ++
Sbjct: 111 SKKAENRSRSKEKTDSGESSKEKK---KDKDDKE----DEKEKDAGNFDQ 153
Score = 43 (20.2 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 20/67 (29%), Positives = 28/67 (41%)
Query: 96 KGKSAVSKKETKRDNNEKPGHLEQTKEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHL 155
K S S KE K+D ++K E KEK + N L + + KR VE+
Sbjct: 123 KTDSGESSKEKKKDKDDK----EDEKEK--DAGNFDQNKLE--EEMRKRKERVEKWREEQ 174
Query: 156 NGKSCAN 162
K+ N
Sbjct: 175 RKKAMEN 181
Score = 40 (19.1 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 89 KNKNAFVKGKSAVSKK---ETKRDNNEKP-GHLEQTK 121
++K G+S+ KK + K D EK G+ +Q K
Sbjct: 119 RSKEKTDSGESSKEKKKDKDDKEDEKEKDAGNFDQNK 155
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 169 (64.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 90/415 (21%), Positives = 169/415 (40%)
Query: 166 GQACEKLDCPSKFLILCLNAIE--NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL-- 221
G+ C K P K + C +++ N+++ G E+ P + + I S +D++
Sbjct: 364 GKGCPK---PIKSWVQCGISMKILNSLKKHGYEKPTP--IQTQAIP---AIMSGRDLIGI 415
Query: 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280
+GS TI + + D R +EG GP + + ++E A ++ CK K
Sbjct: 416 AKTGSGKTIAFLLPMFRHIMDQ--RSLEEG---EGPIAVIMTPTRELALQITKECKKFSK 470
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIXXXXXXXXXXXXXX 340
G+ V ++ G I QI L+ E +V TP R++ +++ +
Sbjct: 471 TLGLRVVCVYGGTGISEQIAELKR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLD 529
Query: 341 XXXK----GDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA 394
+ G ++R + +P TV+F+ T+ P L I + V
Sbjct: 530 EADRMFDMGFEPQVMRIVDNVRPDRQTVMFS--ATF---PRAMEALARRILSKPIEVQVG 584
Query: 395 SQSA-CI-IQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVST 452
+S C ++ + +E+K LK +++L H + E V+ V K L+
Sbjct: 585 GRSVVCSDVEQQVIVIEEEKKFLKLLELLGH------YQESGSVIIFVDKQEHADGLLKD 638
Query: 453 LKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIIS 512
L Y + I + ++S+ D K ++ ++ L+ +++V ++
Sbjct: 639 LMRASYPCMSLHGGIDQYDRDSIINDF-KNGTCKLLVATSVAARGLDVKHLILVVNYSCP 697
Query: 513 --MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV R G ++F T+D A +AG +I+ LE G VP L L
Sbjct: 698 NHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKL 752
Score = 45 (20.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 102 SKK-ETKRDNNEKPGHLEQTKEKAINLKNSQDKSLLFIDGVEKRTGNVER 150
SKK E + + EK E +KEK K+ DK D EK GN ++
Sbjct: 111 SKKTENRSRSKEKTDGGESSKEKK---KDKDDKE----DEKEKDAGNFDQ 153
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 165 (63.1 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 111/501 (22%), Positives = 207/501 (41%)
Query: 90 NKNAFVKGK-SAVSKKETKRDNNEKPG-HLEQTKEKAIN--LKNSQDKSLLFIDGVEKRT 145
N NA G S + E +R+ + PG +L + K + + LK+ + + E++
Sbjct: 157 NYNAAALGMLSKEERAEIQREKAKNPGRNLVKPKWENLEPFLKDFYNIHPNTLAKSEQQV 216
Query: 146 GNVERA-EVHLNGKSCANGHHGQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVN 204
+ R E+ ++G H + E+ P+ + IE M+ G + P +
Sbjct: 217 AEIRRELEITVSGNELP--HPVVSFEESSLPA-------HVIEE-MKRQGFTK--PTAIQ 264
Query: 205 SWGIEFWKCYSSAKDI--LETSGSSSTIVQIAWIVATAADS--IARKEKEGFSFTGPFLL 260
S G W S +D+ + +GS T+ + + + I R E GP L
Sbjct: 265 SQG---WPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIRGE-------GPIAL 314
Query: 261 FLVSSQEKAAKVRSV-------CKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
L ++E A +++SV CKP I + G++ Q L E +++T
Sbjct: 315 VLAPTRELAQQIQSVVRDYGHLCKP----EIRHTCIFGGSSKVPQARDLDR-GVEVIIAT 369
Query: 314 PERLLKLVSLKAIXXXXXXXXXXXXXXXXXKGDTLSLIRQSISG-KPHTVVFNDCLTYTS 372
P RL+ + + IR+ I +P V T+
Sbjct: 370 PGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATWPK 429
Query: 373 -VPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYG-DHFH 430
V A+ L ++++ S + I Q V +C ++ EK + + +L+ +
Sbjct: 430 EVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEIC-TEIEKPQRLVCLLNEISPIKNSG 488
Query: 431 SEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDK 490
+ K++ V K ++++ ++ +GY+ ++ + ++SV D R + +I
Sbjct: 489 NNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIAT 548
Query: 491 DHISTA-ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIE 549
D S ++E+ + VI D+ S +NYV + R G ++FFT D+A A ++I
Sbjct: 549 DVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQARELIS 608
Query: 550 ILEQCGQVVPDALRDLCHTSP 570
+LE+ GQ AL DL + P
Sbjct: 609 VLEEAGQTPSQALLDLARSMP 629
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 169 (64.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 90/415 (21%), Positives = 169/415 (40%)
Query: 166 GQACEKLDCPSKFLILCLNAIE--NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL-- 221
G+ C K P K + C +++ N+++ G E+ P + + I S +D++
Sbjct: 364 GKGCPK---PIKSWVQCGISMKILNSLKKHGYEKPTP--IQTQAIP---AIMSGRDLIGI 415
Query: 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280
+GS TI + + D R +EG GP + + ++E A ++ CK K
Sbjct: 416 AKTGSGKTIAFLLPMFRHIMDQ--RSLEEG---EGPIAVIMTPTRELALQITKECKKFSK 470
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIXXXXXXXXXXXXXX 340
G+ V ++ G I QI L+ E +V TP R++ +++ +
Sbjct: 471 TLGLRVVCVYGGTGISEQIAELKR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLD 529
Query: 341 XXXK----GDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA 394
+ G ++R + +P TV+F+ T+ P L I + V
Sbjct: 530 EADRMFDMGFEPQVMRIVDNVRPDRQTVMFS--ATF---PRAMEALARRILSKPIEVQVG 584
Query: 395 SQSA-CI-IQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVST 452
+S C ++ + +E+K LK +++L H + E V+ V K L+
Sbjct: 585 GRSVVCSDVEQQVIVIEEEKKFLKLLELLGH------YQESGSVIIFVDKQEHADGLLKD 638
Query: 453 LKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIIS 512
L Y + I + ++S+ D K ++ ++ L+ +++V ++
Sbjct: 639 LMRASYPCMSLHGGIDQYDRDSIINDF-KNGTCKLLVATSVAARGLDVKHLILVVNYSCP 697
Query: 513 --MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV R G ++F T+D A +AG +I+ LE G VP L L
Sbjct: 698 NHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKL 752
Score = 43 (20.2 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 99 SAVSKKETKRDNNEKPGHLEQTKEKAINLKNSQDKSLLFIDGVEKRTGNVER 150
S K E + + EK + +KEK K+ DK D EK GN ++
Sbjct: 109 SKTKKTENRSRSKEKAEGGDSSKEKK---KDKDDKE----DEKEKDAGNFDQ 153
Score = 42 (19.8 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 19/67 (28%), Positives = 28/67 (41%)
Query: 96 KGKSAVSKKETKRDNNEKPGHLEQTKEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHL 155
K + S KE K+D ++K E KEK + N L + + KR VE+
Sbjct: 123 KAEGGDSSKEKKKDKDDK----EDEKEK--DAGNFDQNKLE--EEMRKRKERVEKWREEQ 174
Query: 156 NGKSCAN 162
K+ N
Sbjct: 175 RKKAMEN 181
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 165 (63.1 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 75/324 (23%), Positives = 141/324 (43%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 614 GPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKR-GAEIIVCTP 672
Query: 315 ERLLKLVSLKAIXXXXXXXXXXXXXXXXXKGDTLSL---IRQSISG-KP--HTVVFNDCL 368
R++ L++ A + + + + +S +P TV+F+
Sbjct: 673 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQTVLFSATF 732
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V VC ++E+K ++ +++L + Y
Sbjct: 733 PRNMEALARKTLTKPIEIVVGGRSVVAPE--ITQIVEVC-NEEKKFVRLLELLGNLYSTD 789
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHI-KNSVEADGRKRPAVSM 487
+E + L V + L+ L KGY C+ H K+ ++ D +
Sbjct: 790 -ENEDARSLIFVDRQEAADTLLRELMRKGYP------CMSIHGGKDQIDRDSTIEDFKAG 842
Query: 488 IDKDHISTA------ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541
I I+T+ ++++ ++V+ D +++YV R +G +F T+D
Sbjct: 843 IFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQE 902
Query: 542 AHAGQMIEILEQCGQVVPDALRDL 565
++ + + L+Q GQ VP+A++ L
Sbjct: 903 RYSVDIAKALKQSGQEVPEAVQKL 926
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 169 (64.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 90/415 (21%), Positives = 169/415 (40%)
Query: 166 GQACEKLDCPSKFLILCLNAIE--NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL-- 221
G+ C K P K + C +++ N+++ G E+ P + + I S +D++
Sbjct: 364 GKGCPK---PIKSWVQCGISMKILNSLKKHGYEKPTP--IQTQAIP---AIMSGRDLIGI 415
Query: 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280
+GS TI + + D R +EG GP + + ++E A ++ CK K
Sbjct: 416 AKTGSGKTIAFLLPMFRHIMDQ--RSLEEG---EGPIAVIMTPTRELALQITKECKKFSK 470
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIXXXXXXXXXXXXXX 340
G+ V ++ G I QI L+ E +V TP R++ +++ +
Sbjct: 471 TLGLRVVCVYGGTGISEQIAELKR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLD 529
Query: 341 XXXK----GDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA 394
+ G ++R + +P TV+F+ T+ P L I + V
Sbjct: 530 EADRMFDMGFEPQVMRIVDNVRPDRQTVMFS--ATF---PRAMEALARRILSKPIEVQVG 584
Query: 395 SQSA-CI-IQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVST 452
+S C ++ + +E+K LK +++L H + E V+ V K L+
Sbjct: 585 GRSVVCSDVEQQVIVIEEEKKFLKLLELLGH------YQESGSVIIFVDKQEHADGLLKD 638
Query: 453 LKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIIS 512
L Y + I + ++S+ D K ++ ++ L+ +++V ++
Sbjct: 639 LMRASYPCMSLHGGIDQYDRDSIINDF-KNGTCKLLVATSVAARGLDVKHLILVVNYSCP 697
Query: 513 --MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV R G ++F T+D A +AG +I+ LE G VP L L
Sbjct: 698 NHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKL 752
Score = 42 (19.8 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 19/67 (28%), Positives = 28/67 (41%)
Query: 96 KGKSAVSKKETKRDNNEKPGHLEQTKEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHL 155
K + S KE K+D ++K E KEK + N L + + KR VE+
Sbjct: 123 KAEGGDSSKEKKKDKDDK----EDEKEK--DAGNFDQNKLE--EEMRKRKERVEKWREEQ 174
Query: 156 NGKSCAN 162
K+ N
Sbjct: 175 RKKAMEN 181
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 169 (64.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 90/415 (21%), Positives = 169/415 (40%)
Query: 166 GQACEKLDCPSKFLILCLNAIE--NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL-- 221
G+ C K P K + C +++ N+++ G E+ P + + I S +D++
Sbjct: 364 GKGCPK---PIKSWVQCGISMKILNSLKKHGYEKPTP--IQTQAIP---AIMSGRDLIGI 415
Query: 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280
+GS TI + + D R +EG GP + + ++E A ++ CK K
Sbjct: 416 AKTGSGKTIAFLLPMFRHIMDQ--RSLEEG---EGPIAVIMTPTRELALQITKECKKFSK 470
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIXXXXXXXXXXXXXX 340
G+ V ++ G I QI L+ E +V TP R++ +++ +
Sbjct: 471 TLGLRVVCVYGGTGISEQIAELKR-GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLD 529
Query: 341 XXXK----GDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA 394
+ G ++R + +P TV+F+ T+ P L I + V
Sbjct: 530 EADRMFDMGFEPQVMRIVDNVRPDRQTVMFS--ATF---PRAMEALARRILSKPIEVQVG 584
Query: 395 SQSA-CI-IQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVST 452
+S C ++ + +E+K LK +++L H + E V+ V K L+
Sbjct: 585 GRSVVCSDVEQQVIVIEEEKKFLKLLELLGH------YQESGSVIIFVDKQEHADGLLKD 638
Query: 453 LKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIIS 512
L Y + I + ++S+ D K ++ ++ L+ +++V ++
Sbjct: 639 LMRASYPCMSLHGGIDQYDRDSIINDF-KNGTCKLLVATSVAARGLDVKHLILVVNYSCP 697
Query: 513 --MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV R G ++F T+D A +AG +I+ LE G VP L L
Sbjct: 698 NHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKL 752
Score = 42 (19.8 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 19/67 (28%), Positives = 28/67 (41%)
Query: 96 KGKSAVSKKETKRDNNEKPGHLEQTKEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHL 155
K + S KE K+D ++K E KEK + N L + + KR VE+
Sbjct: 123 KAEGGDSSKEKKKDKDDK----EDEKEK--DAGNFDQNKLE--EEMRKRKERVEKWREEQ 174
Query: 156 NGKSCAN 162
K+ N
Sbjct: 175 RKKAMEN 181
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 160 (61.4 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 91/415 (21%), Positives = 167/415 (40%)
Query: 166 GQACEKLDCPSKFLILCLNAIE--NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL-- 221
G+ C K P K + C +++ A++ G E+ P + S I + +D++
Sbjct: 363 GKGCPK---PIKTWVQCGISMKILTALKKHGYEKPTP--IQSQAIP---AIMNGRDLIGI 414
Query: 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280
+GS TI + + D A +E EG P + + ++E A ++ CK K
Sbjct: 415 AKTGSGKTIAFLLPMFRHIMDQRALEEGEG-----PIAVIMTPTRELALQITKECKKFSK 469
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIXXXXXXXXXXXXXX 340
G+ V ++ G I QI L+ E +V TP R++ +++
Sbjct: 470 TLGLRVVCVYGGTGISEQIAELKR-GAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLD 528
Query: 341 XXXK----GDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA 394
+ G ++R + +P TV+F+ T+ P L I + V
Sbjct: 529 EADRMFDMGFEPQVMRIVDNVRPDRQTVMFS--ATF---PRAMEALARRILSKPIEVQVG 583
Query: 395 SQSA-CIIQSVNVCASDEE-KILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVST 452
+S C +V +EE K LK +++L H + E V+ V K L+
Sbjct: 584 GRSVVCSDVEQHVIVIEEENKFLKLLELLGH------YQEKGSVIIFVDKQEHADGLLKD 637
Query: 453 LKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIIS 512
L Y + I + ++S+ D K ++ ++ L+ ++++V ++
Sbjct: 638 LMRASYPCLSLHGGIDQYDRDSIINDF-KNGTCKLLVATSVAARGLDVKQLMLVVNYSCP 696
Query: 513 --MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV R G ++F T+D A +AG +I+ LE G +P L L
Sbjct: 697 NHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDIIKALELSGNPIPADLEKL 751
>DICTYBASE|DDB_G0292010 [details] [associations]
symbol:DDB_G0292010 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292010 GO:GO:0005524
EMBL:AAFI02000187 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
ProtClustDB:CLSZ2846571 RefSeq:XP_629765.1
ProteinModelPortal:Q54DV7 EnsemblProtists:DDB0184159 GeneID:8628441
KEGG:ddi:DDB_G0292010 InParanoid:Q54DV7 OMA:VESSCKP Uniprot:Q54DV7
Length = 777
Score = 125 (49.1 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 41/158 (25%), Positives = 71/158 (44%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP +L +V ++E A +V S CKPL++ F IH+++++ G + Q L E +++TP
Sbjct: 386 GPMVLIIVPTRELAKQVESSCKPLRSKFNIHSIAIYGGVDANEQKDILGQEHNEIIIATP 445
Query: 315 ERLLKLVSL-KAIXXXXXXXXXXXXXXXXXK-----GDTLSLIRQSISGKPHTVVFNDCL 368
RL+ L+ K + GD L I + I T++F+
Sbjct: 446 GRLVDLIQRSKEVVGLLGGVGMLILDEADRMLQLGFGDQLQKISEQIRPDRQTLMFSATF 505
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNV 406
T A + L + ++ + S +Q + I S NV
Sbjct: 506 PQTMQDAAKKWLTNPL-KIRVKSSSTNQGSTSIISKNV 542
Score = 60 (26.2 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 504 VIVPDFIISMKNYVEILTSMARHTVSGILHSFFTK--DDAAHAGQMIEILEQCGQVV-PD 560
VI DF S++ YV + R G + FT + A +I+ILE+C Q + PD
Sbjct: 655 VINYDFPSSLEQYVHRVGRTGRQGNKGHALTLFTDTPQNTPMARGLIKILEECKQQISPD 714
Query: 561 ALR 563
++
Sbjct: 715 LIK 717
Score = 51 (23.0 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 88 DKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQTKE 122
D+N N K ++ +SKKE +R EK L++ KE
Sbjct: 204 DENNN---KNQTKLSKKEKERIKQEK--RLQEAKE 233
Score = 46 (21.3 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 103 KKETKRDNNEKPGHLEQTKEKAINLKNSQDKS 134
K++ K+DN K HL+ + N ++K+
Sbjct: 162 KRQLKKDNISKEYHLKDQNDNNNNKNKKKNKN 193
Score = 39 (18.8 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 15/73 (20%), Positives = 27/73 (36%)
Query: 62 DDPFNDR-YDXXXXXXXXXXXXNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQT 120
DD F D ++ + Q+ + K K +SK+ +D N+ + +
Sbjct: 132 DDCFGDNIFEFDTADYGSTDFLSDDQISQFKRQLKKDN--ISKEYHLKDQNDNNNNKNKK 189
Query: 121 KEKAINLKNSQDK 133
K K N D+
Sbjct: 190 KNKNNNDDEDDDE 202
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 143 (55.4 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 81/373 (21%), Positives = 155/373 (41%)
Query: 215 SSAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272
+S +D++ + GS TI + + D R K G GP + + ++E A ++
Sbjct: 453 TSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQ--RPLKTG---EGPIAIIMTPTRELAVQI 507
Query: 273 RSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIXXXXX 331
CKP LK I + GA I QI L+ E +V TP R++ ++S A
Sbjct: 508 FRECKPFLKLLNIRACCAYGGAPIKDQIADLKR-GAEIVVCTPGRMIDVLSANAGRVTNL 566
Query: 332 XXXXXXXXXXXXKGDTLSL---IRQSISG-KP--HTVVFNDCLTYTSVPAVQNLLLGSIN 385
+ L + + I+ +P TV+F+ + P L +
Sbjct: 567 HRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFS-----ATFPRAMEALARKVL 621
Query: 386 RLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKD 443
+ + +V +S A ++ + +E K + +++L Y + ++ L V +
Sbjct: 622 KKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGELYNNQLD---VRTLVFVDRQ 678
Query: 444 SKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTA-ELEEYE 502
L+S L +GY+ ++ H ++S +D + +I ++ +++ +
Sbjct: 679 ESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQ 738
Query: 503 VVIVPDFIISMKNYVEIL--TSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPD 560
+V+ D M++YV + T A HT G+ +F T + +A + + L+ Q VP
Sbjct: 739 LVVNYDCPNHMEDYVHRVGRTGRAGHT--GVAVTFITPEQEKYAVDIAKALKMSKQPVPK 796
Query: 561 ALRDLCHTSPMLE 573
L+ L S LE
Sbjct: 797 ELQTLA--SQFLE 807
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 147 (56.8 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 85/413 (20%), Positives = 164/413 (39%)
Query: 166 GQACEKLDCPSKFLILCLNAIE--NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL-- 221
G+ C K P K + C +++ NA++ E+ P + + I S +D++
Sbjct: 349 GKGCPK---PIKTWVQCGISMKVLNALKKHNYEKPTP--IQAQAIP---AIMSGRDLIGI 400
Query: 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280
+GS TI + + D E EG P + + ++E A ++ CK K
Sbjct: 401 AKTGSGKTIAFLLPMFRHILDQRPVGEAEG-----PLAVIMTPTRELALQITKECKKFSK 455
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIXXXXXXXXXXXXXX 340
+ + V ++ G I QI L+ E +V TP R++ ++
Sbjct: 456 SLALRVVCVYGGTGISEQIAELKR-GAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVID 514
Query: 341 XXXK----GDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA 394
+ G ++R + +P TV+F+ T + +L + +SV
Sbjct: 515 EADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVV 574
Query: 395 SQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLK 454
+ Q V + +E+K LK +++L H + E V+ V K L+ L
Sbjct: 575 CSD--VEQHV-IVIEEEKKFLKLLEILGH------YQEKGSVIIFVDKQEHADGLLKDLM 625
Query: 455 CKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIIS-- 512
Y + I + ++S+ D K A ++ ++ L+ ++++V ++
Sbjct: 626 KASYPCMSLHGGIDQYDRDSIINDF-KNGACRLLVATSVAARGLDVKQLILVVNYSCPNH 684
Query: 513 MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV R G ++F T+ A ++G +++ LE G VP L L
Sbjct: 685 YEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGDILKALELSGSSVPAELEQL 737
Score = 40 (19.1 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 102 SKKETKRDNNEKPGHLEQTKEKAINLKNSQDK 133
SK ++ + EKP + +QT +K +K +++
Sbjct: 81 SKSRSRGRSKEKPENGDQTADKK-KIKEEKEE 111
Score = 38 (18.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 96 KGKSAVSKKETKRDNNEKPGHLEQTKEKAINLKNSQDK 133
K +S SK+ K D H + + ++ + S+++
Sbjct: 23 KSRSPDSKRSKKDDRTASRTHSRRERSRSRERRRSRER 60
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 110 (43.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 22/73 (30%), Positives = 44/73 (60%)
Query: 497 ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQ 556
++++ + V+ DF ++++Y+ + R G+ +FFT D+A A ++++IL++ GQ
Sbjct: 475 DVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQ 534
Query: 557 VVPDALRDLCHTS 569
VVP L L +S
Sbjct: 535 VVPPTLSALVRSS 547
Score = 71 (30.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 27/115 (23%), Positives = 58/115 (50%)
Query: 211 WKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
W +D++ +GS T+ A+++ A ++ + + G GP +L L ++E
Sbjct: 196 WPMALKGRDLIGIAETGSGKTL---AYLLP-ALVHVSAQPRLGQD-DGPIVLILAPTREL 250
Query: 269 AAKVRSVCKP--LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
A +++ + L++ G+ + ++ GA QI LR E +++TP RL+ ++
Sbjct: 251 AVQIQEESRKFGLRS-GVRSTCIYGGAPKGPQIRDLRR-GVEIVIATPGRLIDML 303
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 112 (44.5 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 46/177 (25%), Positives = 86/177 (48%)
Query: 400 IIQSVNVCASDEEKILKGIQVLDHAYGDH--------FH-SEPLKVLYIVGKDSKFQNLV 450
II SV++ A+ + +++ I+VLD D +H S+ +VL + + L
Sbjct: 326 IIGSVDLAANHD--VMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLE 383
Query: 451 STLKCKGY-SISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELE--EYEVVIVP 507
L+ +G+ ++S N S S+ K + ++ ++ L+ + EVVI
Sbjct: 384 RFLQQRGWKAVSIHGNKAQSERTRSLSLF--KEGSCPLLVATDVAARGLDIPDVEVVINY 441
Query: 508 DFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVP-DALR 563
F ++ ++YV + R G+ H+FFT + AG+++ +L + GQVVP D L+
Sbjct: 442 TFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVPADLLK 498
Score = 67 (28.6 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 27/117 (23%), Positives = 56/117 (47%)
Query: 211 WKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKE---GFSFTGPFLLFLVSS 265
W +D++ +GS T+ A+ + A + +K K+ G P L L +
Sbjct: 145 WPFLLDGRDLIGIAKTGSGKTL---AFGIP-AIMHVLKKNKKIGGGSKKVNPTCLVLSPT 200
Query: 266 QEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
+E A ++ V + + G+ ++ ++ G++ QI+ +RS + ++ TP RL L+
Sbjct: 201 RELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRS-GVDIVIGTPGRLRDLI 256
Score = 37 (18.1 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 101 VSKKETKRDNNEKPGHLEQTKEKAINLKNSQDKSL 135
+S KE K+ + E+ K+K + K + + L
Sbjct: 56 LSNKEKKKKRKREEKESEKNKKKDVPEKKLEAEDL 90
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 94 (38.1 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 31/136 (22%), Positives = 56/136 (41%)
Query: 436 VLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHIST 495
VL V K + + L + L +GYS+ + +N V AD +K+ ++ D +
Sbjct: 505 VLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAAR 564
Query: 496 A-ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQC 554
++ V+ D + + + R G+ ++ T D + AG ++ LE
Sbjct: 565 GLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTSFAGDLVRNLEGA 624
Query: 555 GQVVPDALRDLCHTSP 570
Q V L DL +P
Sbjct: 625 NQSVSKDLLDLAMQNP 640
Score = 89 (36.4 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 36/131 (27%), Positives = 59/131 (45%)
Query: 196 EQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
E P + G+ A I +T GS T I I+ D +KE E
Sbjct: 276 EYTQPTPIQCQGVPIALSGRDAIGIAKT-GSGKTAAFIWPILVHIMD---QKELEPGE-- 329
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E ++ + CK KA+G+ +V+++ G ++ Q L+ E +V TP
Sbjct: 330 GPIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQE-GAEIVVCTP 388
Query: 315 ERLLKLVSLKA 325
RL+ V KA
Sbjct: 389 GRLIDHVKKKA 399
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 131 (51.2 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 71/321 (22%), Positives = 131/321 (40%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGL-RSCEPEFLVST 313
GP L L ++E A +++ V + + + GA Q+ L R CE +++T
Sbjct: 354 GPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE--IVIAT 411
Query: 314 PERLLKLVSLKAIXXXXXXXXXXXXXXXXXKGDTLSLIRQSISG-KPHTVVFNDCLTYTS 372
P RL+ +S + IR+ +S +P T+
Sbjct: 412 PGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPK 471
Query: 373 -VPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCA--SDEEKILKGIQVLDHAYGDHF 429
V + LG+ ++++ S + I Q V+VC S EEK LK + L Y D
Sbjct: 472 EVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEK-LKTL--LSDIY-DTS 527
Query: 430 HSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMID 489
S P K++ V + NLV ++ G ++ V + R + ++
Sbjct: 528 ES-PGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 586
Query: 490 KDHISTA-ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMI 548
D + +++ + VI D+ + ++Y+ + R G +FFTK++A A ++
Sbjct: 587 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALV 646
Query: 549 EILEQCGQVVPDALRDLCHTS 569
++L + Q + AL +L S
Sbjct: 647 DVLREANQEINPALENLARNS 667
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 132 (51.5 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 78/365 (21%), Positives = 153/365 (41%)
Query: 216 SAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +D++ + GS T+ + + D K+ EG P L L ++E A ++
Sbjct: 414 SGRDVVGVAKTGSGKTMAFLLPMFRHIKDQEPVKDNEG-----PIGLILTPTRELAVQIF 468
Query: 274 SVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIXXXXXX 332
CKP LK G+ V + G I QI L+ E +V+T R++ L++
Sbjct: 469 RDCKPFLKTLGLRAVCAYGGPPIKDQIADLKR-GAEIVVATTGRMIDLLAANQGRVVSLR 527
Query: 333 XXXXXXXXXXXK----GDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINR 386
+ G +++ + +P TV+F+ ++P + + L+ + +
Sbjct: 528 RTTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQTVLFS-----ATMPKIMDALVKKVLK 582
Query: 387 LSLNQSVASQSAC---IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKD 443
+ V +S I Q V + ++ K + +++L Y D + ++ L V +
Sbjct: 583 NPVEIEVGGKSVVASEITQIVEI-RDEKSKFNRLLELLGELYKD---DDDVRSLIFVERQ 638
Query: 444 SKFQNLVSTLKCKGYSIST--GSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTA-ELEE 500
K L+ L KGY + G V ++S +D + MI + ++++
Sbjct: 639 EKADELLRELLRKGYGCMSLHGGKDQVD--RDSTISDFKSGVCPVMIATSVAARGLDVKQ 696
Query: 501 YEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPD 560
++V+ D +++YV R +G +F T++ A + + LEQ GQ VP+
Sbjct: 697 LKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQENCAIGIAKALEQSGQPVPE 756
Query: 561 ALRDL 565
L ++
Sbjct: 757 KLIEM 761
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 130 (50.8 bits), Expect = 0.00012, P = 0.00012
Identities = 72/327 (22%), Positives = 134/327 (40%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G L + ++E A ++ CK K G+ T ++ GA+I QI L+ + +V TP
Sbjct: 582 GMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKR-GADIVVCTP 640
Query: 315 ERLL--------KLVSLKAIXXXXXXXXXXXXXXXXXKGDTLSLIRQSISGKPHTVVFND 366
R++ ++ +L+ + G ++ I SI T++F+
Sbjct: 641 GRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGF--GPQINCIVDSIRPDRQTIMFSA 698
Query: 367 CLTYTSVPAVQNLLLGSINR-LSL---NQSVASQSACIIQSVNVCASDEEKILKGIQVLD 422
T P V+N+ +N+ L + +S+ S I Q V V + E + + I++L
Sbjct: 699 ----TFPPKVENVAKKILNKPLEIIAGGRSIVSSD--IEQFVEVRPT-ETRFRRLIELLS 751
Query: 423 HAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKR 482
Y H ++L + NL L Y + ++ +D + +
Sbjct: 752 IWY----HKG--QILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNK 805
Query: 483 PAVSMIDKDHISTA-ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541
+I S ++++ +V+ D +++YV + R G ++F T D+
Sbjct: 806 VKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEE 865
Query: 542 AHAGQMIEILEQCGQVVPDALRDLCHT 568
+ +I+ LEQ G VPD LR L T
Sbjct: 866 RFSSSIIKALEQSGSKVPDELRKLNDT 892
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 124 (48.7 bits), Expect = 0.00018, P = 0.00018
Identities = 79/388 (20%), Positives = 155/388 (39%)
Query: 185 AIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAAD 242
+I +R +G E+ +P + S + W S +D + S GS T+ + +
Sbjct: 94 SIMGEIRKNGFEKPSP--IQS---QMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDA 148
Query: 243 SIARKEK-EGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITG 301
+A+ EK + PF+L L ++E A ++ K G +V L+ G + Q+
Sbjct: 149 QLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYNGYKSVCLYGGGSRPEQVEA 208
Query: 302 LRSCEPEFLVSTPERLLKLVSLKAIXXXXXXXXXXXXXXXXXK-GDTLSLIRQSISGKPH 360
R E +++TP RL L + I G +++ R +P
Sbjct: 209 CRG-GVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPD 267
Query: 361 TVVFNDCLTYTSVPAVQNLLLGSINR---LSLNQSVASQSACIIQSVNVCASDEEKILKG 417
+V LT + P L + +++N S+ S + + + L+
Sbjct: 268 RLV---ALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRV 324
Query: 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEA 477
++++ H + K++ V +L S KG + S G + S +
Sbjct: 325 CEIVNFLTAAH--GQNYKMIIFVKSKVMADHLSSDFCMKGIN-SQGLHGGRSQSDREMSL 381
Query: 478 DGRKRPAVSMIDKDHISTAELEEYEV--VIVPDFIISMKNYVEILTSMARHTVSGILHSF 535
+ + V ++ +++ ++ ++ V+ DF + ++ YV + R G SF
Sbjct: 382 NMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSF 441
Query: 536 FTKDDAAHAGQMIEILEQCGQVVPDALR 563
+D ++ +I+ILE+ Q VPD LR
Sbjct: 442 LWWNDRSNFEGLIQILEKSEQEVPDQLR 469
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 104 (41.7 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 21/73 (28%), Positives = 43/73 (58%)
Query: 497 ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQ 556
++++ + VI D+ + ++YV + R G ++FFT +A+ A ++++L++ Q
Sbjct: 441 DVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500
Query: 557 VVPDALRDLCHTS 569
VP ALRD+ + S
Sbjct: 501 TVPQALRDMANRS 513
Score = 65 (27.9 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 29/111 (26%), Positives = 48/111 (43%)
Query: 211 WKCYSSAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
W S +DI+ + GS T+ + + R+ EG P +L L+ ++E
Sbjct: 160 WPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEG-----PAVLVLLPTREL 214
Query: 269 AAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
A +V+ V + G+ L GA+ Q L + +V+TP RLL
Sbjct: 215 AQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLER-GVDIVVATPGRLL 264
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 109 (43.4 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 45/172 (26%), Positives = 81/172 (47%)
Query: 400 IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459
I+Q V+VC + EK K IQ+++ + E ++++ K + +L ++ G+
Sbjct: 309 ILQIVDVCM-ESEKDHKLIQLMEEIMAE---KENKTIIFVETK-RRCDDLTRRMRRDGWP 363
Query: 460 ISTGSNCIVSHIKNSVEADG-----RKRPAVSMIDKDHISTA-ELEEYEVVIVPDFIISM 513
+ CI K+ E D R A +I D S ++E+ + VI D+ S
Sbjct: 364 ----AMCIHGD-KSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSS 418
Query: 514 KNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV + AR T G ++FFT + A ++I++LE+ Q + L L
Sbjct: 419 EDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 470
Score = 57 (25.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L L ++E A +V+ V K + + ++ GA QI L E ++TP
Sbjct: 163 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLER-GVEICIATP 221
Query: 315 ERLL 318
RL+
Sbjct: 222 GRLI 225
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 123 (48.4 bits), Expect = 0.00043, P = 0.00043
Identities = 87/381 (22%), Positives = 157/381 (41%)
Query: 199 NPLFVNSWGIEFWKCYSSAKDI--LETSGSSSTIV-QIAWIVATAADSIARKEKEGFSFT 255
NP + S + W +DI L +GS T+ + IV A + R++
Sbjct: 406 NPTPIQS---QAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDD------ 456
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP +L L ++E A +++ I ++ GA+ Q+ L+ E +++TP
Sbjct: 457 GPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKK-GVEIVIATP 515
Query: 315 ERLLKLV-SLKAIXXXXXXXXXXXXXXXXXKGDTLSLIRQSISG-KP--HTVVFNDCLTY 370
RL+ ++ S K G IR+ IS +P T++F+ T+
Sbjct: 516 GRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQ-IRKIISQIRPDRQTLMFS--ATW 572
Query: 371 TS-VPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHF 429
V A+ + L ++ + + + + + Q V VC D EK + + L D
Sbjct: 573 PKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVC-QDFEKKERMLSFLGSVGRDE- 630
Query: 430 HSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVS-MI 488
KV+ +L L+ G+ S G + S + K V MI
Sbjct: 631 -----KVIVFAETRKGVDDLQRVLQFSGFK-SIGIHGNKSQPERDFVLSQFKNGMVPIMI 684
Query: 489 DKDHISTA-ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQM 547
D S ++++ + V+ DF +++ Y+ + AR SG+ +S T D+A A ++
Sbjct: 685 ATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANEL 744
Query: 548 IEILEQCGQVVPDALRDLCHT 568
I++L + Q +P L +L T
Sbjct: 745 IKVLTEAKQKIPIELSNLSVT 765
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 109 (43.4 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 45/172 (26%), Positives = 81/172 (47%)
Query: 400 IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459
I+Q V+VC + EK K IQ+++ + E ++++ K + +L ++ G+
Sbjct: 311 ILQIVDVCM-ESEKDHKLIQLMEEIMAE---KENKTIIFVETK-RRCDDLTRRMRRDGWP 365
Query: 460 ISTGSNCIVSHIKNSVEADG-----RKRPAVSMIDKDHISTA-ELEEYEVVIVPDFIISM 513
+ CI K+ E D R A +I D S ++E+ + VI D+ S
Sbjct: 366 ----AMCIHGD-KSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSS 420
Query: 514 KNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV + AR T G ++FFT + A ++I++LE+ Q + L L
Sbjct: 421 EDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 472
Score = 57 (25.1 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L L ++E A +V+ V K + + ++ GA QI L E ++TP
Sbjct: 165 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLER-GVEICIATP 223
Query: 315 ERLL 318
RL+
Sbjct: 224 GRLI 227
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 109 (43.4 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 45/172 (26%), Positives = 81/172 (47%)
Query: 400 IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459
I+Q V+VC + EK K IQ+++ + E ++++ K + +L ++ G+
Sbjct: 311 ILQIVDVCM-ESEKDHKLIQLMEEIMAE---KENKTIIFVETK-RRCDDLTRRMRRDGWP 365
Query: 460 ISTGSNCIVSHIKNSVEADG-----RKRPAVSMIDKDHISTA-ELEEYEVVIVPDFIISM 513
+ CI K+ E D R A +I D S ++E+ + VI D+ S
Sbjct: 366 ----AMCIHGD-KSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSS 420
Query: 514 KNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV + AR T G ++FFT + A ++I++LE+ Q + L L
Sbjct: 421 EDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 472
Score = 57 (25.1 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L L ++E A +V+ V K + + ++ GA QI L E ++TP
Sbjct: 165 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLER-GVEICIATP 223
Query: 315 ERLL 318
RL+
Sbjct: 224 GRLI 227
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 109 (43.4 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 45/172 (26%), Positives = 81/172 (47%)
Query: 400 IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459
I+Q V+VC + EK K IQ+++ + E ++++ K + +L ++ G+
Sbjct: 311 ILQIVDVCM-ESEKDHKLIQLMEEIMAE---KENKTIIFVETK-RRCDDLTRRMRRDGWP 365
Query: 460 ISTGSNCIVSHIKNSVEADG-----RKRPAVSMIDKDHISTA-ELEEYEVVIVPDFIISM 513
+ CI K+ E D R A +I D S ++E+ + VI D+ S
Sbjct: 366 ----AMCIHGD-KSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSS 420
Query: 514 KNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV + AR T G ++FFT + A ++I++LE+ Q + L L
Sbjct: 421 EDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 472
Score = 57 (25.1 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L L ++E A +V+ V K + + ++ GA QI L E ++TP
Sbjct: 165 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLER-GVEICIATP 223
Query: 315 ERLL 318
RL+
Sbjct: 224 GRLI 227
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 120 (47.3 bits), Expect = 0.00070, P = 0.00070
Identities = 81/383 (21%), Positives = 154/383 (40%)
Query: 190 MRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIA-WIVATAADSIARKE 248
+R G ++ P+ +W I I +T G+ T+ + + A+ I K+
Sbjct: 255 IRKTGFQKPTPIQSQAWPIILQGI--DLIGIAQT-GTGKTLAYLMPGFIHLASQPIP-KD 310
Query: 249 KEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPE 308
K G GP +L L ++E A +V + C G ++ ++ G QI + +
Sbjct: 311 KRG----GPGMLVLAPTRELALQVEAECLKYTYKGFKSICIYGGGDRKAQINVVTK-GVD 365
Query: 309 FLVSTPERLLKLVSLKAIXXXXXXXXXXXXXXXXXKGDTLSLIRQSISGKP--HTVVFND 366
+++TP RL L I G +++ I +P TV+
Sbjct: 366 IVIATPGRLNDLQMNNFINLKSITYLANEADRMLDMGFEPQIMKILIDVRPDRQTVM--- 422
Query: 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYG 426
++ T V+ L + N + + +VN E+K++ + A+
Sbjct: 423 -MSATWPDGVRRLAKSYLR----NPMIVYVGTLDLAAVNTV---EQKVIVINEEEKKAFM 474
Query: 427 DHF--HSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSIST--GSNCIVSHIKNSVEADGRK 481
++F +P K + VGK S ++ S L +G + + G D K
Sbjct: 475 ENFIDSMKPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDR---EQCDREQALDDFK 531
Query: 482 RPAVSMIDKDHISTAELEEYEVVIVP--DFIISMKNYVEILTSMARHTVSGILHSFFTKD 539
+ V ++ +++ L+ +++ V DF +++ YV + R +G + TK
Sbjct: 532 KGKVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKK 591
Query: 540 DAAHAGQMIEILEQCGQVVPDAL 562
D A ++I+IL++ QVVPD L
Sbjct: 592 DWKAASELIDILQRAKQVVPDEL 614
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 104 (41.7 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 46/149 (30%), Positives = 73/149 (48%)
Query: 422 DHAYGDHFHS-EPL-KVLYIVGKDSKFQNLVSTLKCKGYSIST--GSN--CIVSHIKNSV 475
D+ + D H EPL KVL VGK K +L S L +G ++ + G C
Sbjct: 511 DYVF-DFIHRMEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDF 569
Query: 476 EADGRKRPAVSMIDKDHISTAELEEYEVVIV--PDFIISMKNYVEILTSMARHTVSGILH 533
+ DGR R V+ D +++ L+ +++ V DF +++ YV + R SG
Sbjct: 570 K-DGRVRILVAT---D-LASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESV 624
Query: 534 SFFTKDDAAHAGQMIEILEQCGQVVPDAL 562
+ T++D A ++I ILE+ GQ VP+ L
Sbjct: 625 TLVTREDWRVAAELITILERSGQDVPEEL 653
Score = 63 (27.2 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
GP +L L ++E A ++ + C G ++ ++ G + QI + S + +++TP
Sbjct: 352 GPGMLVLTPTRELALQIEAECNKYSYKGFKSICIYGGGDRNAQIKVVTS-GVDIVIATPG 410
Query: 316 RL 317
RL
Sbjct: 411 RL 412
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 109 (43.4 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 45/172 (26%), Positives = 81/172 (47%)
Query: 400 IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459
I+Q V+VC + EK K IQ+++ + E ++++ K + +L ++ G+
Sbjct: 390 ILQIVDVCM-ESEKDHKLIQLMEEIMAE---KENKTIIFVETK-RRCDDLTRRMRRDGWP 444
Query: 460 ISTGSNCIVSHIKNSVEADG-----RKRPAVSMIDKDHISTA-ELEEYEVVIVPDFIISM 513
+ CI K+ E D R A +I D S ++E+ + VI D+ S
Sbjct: 445 ----AMCIHGD-KSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSS 499
Query: 514 KNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV + AR T G ++FFT + A ++I++LE+ Q + L L
Sbjct: 500 EDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 551
Score = 57 (25.1 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L L ++E A +V+ V K + + ++ GA QI L E ++TP
Sbjct: 244 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLER-GVEICIATP 302
Query: 315 ERLL 318
RL+
Sbjct: 303 GRLI 306
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 109 (43.4 bits), Expect = 0.00088, Sum P(2) = 0.00087
Identities = 45/172 (26%), Positives = 81/172 (47%)
Query: 400 IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459
I+Q V+VC + EK K IQ+++ + E ++++ K + +L ++ G+
Sbjct: 390 ILQIVDVCM-ESEKDHKLIQLMEEIMAE---KENKTIIFVETK-RRCDDLTRRMRRDGWP 444
Query: 460 ISTGSNCIVSHIKNSVEADG-----RKRPAVSMIDKDHISTA-ELEEYEVVIVPDFIISM 513
+ CI K+ E D R A +I D S ++E+ + VI D+ S
Sbjct: 445 ----AMCIHGD-KSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSS 499
Query: 514 KNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV + AR T G ++FFT + A ++I++LE+ Q + L L
Sbjct: 500 EDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 551
Score = 57 (25.1 bits), Expect = 0.00088, Sum P(2) = 0.00087
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L L ++E A +V+ V K + + ++ GA QI L E ++TP
Sbjct: 244 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLER-GVEICIATP 302
Query: 315 ERLL 318
RL+
Sbjct: 303 GRLI 306
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 109 (43.4 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 45/172 (26%), Positives = 81/172 (47%)
Query: 400 IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459
I+Q V+VC + EK K IQ+++ + E ++++ K + +L ++ G+
Sbjct: 392 ILQIVDVCM-ESEKDHKLIQLMEEIMAE---KENKTIIFVETK-RRCDDLTRRMRRDGWP 446
Query: 460 ISTGSNCIVSHIKNSVEADG-----RKRPAVSMIDKDHISTA-ELEEYEVVIVPDFIISM 513
+ CI K+ E D R A +I D S ++E+ + VI D+ S
Sbjct: 447 ----AMCIHGD-KSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSS 501
Query: 514 KNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV + AR T G ++FFT + A ++I++LE+ Q + L L
Sbjct: 502 EDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 553
Score = 57 (25.1 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L L ++E A +V+ V K + + ++ GA QI L E ++TP
Sbjct: 246 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLER-GVEICIATP 304
Query: 315 ERLL 318
RL+
Sbjct: 305 GRLI 308
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 109 (43.4 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 45/172 (26%), Positives = 81/172 (47%)
Query: 400 IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459
I+Q V+VC + EK K IQ+++ + E ++++ K + +L ++ G+
Sbjct: 392 ILQIVDVCM-ESEKDHKLIQLMEEIMAE---KENKTIIFVETK-RRCDDLTRRMRRDGWP 446
Query: 460 ISTGSNCIVSHIKNSVEADG-----RKRPAVSMIDKDHISTA-ELEEYEVVIVPDFIISM 513
+ CI K+ E D R A +I D S ++E+ + VI D+ S
Sbjct: 447 ----AMCIHGD-KSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSS 501
Query: 514 KNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV + AR T G ++FFT + A ++I++LE+ Q + L L
Sbjct: 502 EDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 553
Score = 57 (25.1 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L L ++E A +V+ V K + + ++ GA QI L E ++TP
Sbjct: 246 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLER-GVEICIATP 304
Query: 315 ERLL 318
RL+
Sbjct: 305 GRLI 308
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 573 505 0.00086 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 33
No. of states in DFA: 618 (66 KB)
Total size of DFA: 294 KB (2152 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 43.54u 0.17s 43.71t Elapsed: 00:00:02
Total cpu time: 43.55u 0.17s 43.72t Elapsed: 00:00:02
Start: Tue May 21 13:34:26 2013 End: Tue May 21 13:34:28 2013