BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008235
(573 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=DBP2 PE=3 SV=1
Length = 495
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 163/371 (43%), Gaps = 31/371 (8%)
Query: 211 WKCYSSAKDI--LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
W S +D+ + +GS T+ I + A D + +G P +L L ++E
Sbjct: 118 WPMALSGRDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGDG-----PIVLVLAPTREL 172
Query: 269 AAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
+++ V F + + +++ GA+ QI L E +++TP RL+ L
Sbjct: 173 VMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRALHEGA-EVVIATPGRLIDLHDQGHAP 231
Query: 328 VSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV--PAVQNLLLGSIN 385
+S V+ LV+D D + +R+ I P T L +++ V+ L +N
Sbjct: 232 LSRVTFLVLDEADRMLDMGFEPQLRKII---PKTNANRQTLMWSATWPREVRGLAESYMN 288
Query: 386 R----LSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVG 441
+ N+ + + S I Q V VC S EK K I VLD+ GD KV+
Sbjct: 289 EYIQVVVGNEELKTNSK-IKQIVEVC-SGREKEDKLIGVLDNFKGD-------KVIVFCN 339
Query: 442 KDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGR--KRPAVSMIDKDHISTAELE 499
+L L GY + +I++ V D R +RP + + + ++
Sbjct: 340 MKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRP-ILIATEVAGRGLDVN 398
Query: 500 EYEVVIVPDFIISMKNYVEILTSMAR-HTVSGILHSFFTKDDAAHAGQMIEILEQCGQVV 558
+ ++VI DF S ++YV + AR +T GI H+FFT D A+A ++I +L + Q V
Sbjct: 399 DVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKANARELIRMLREANQTV 458
Query: 559 PDALRDLCHTS 569
P L D+ S
Sbjct: 459 PSDLEDMVRVS 469
>sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa subsp.
japonica GN=Os07g0301200 PE=2 SV=1
Length = 512
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/387 (23%), Positives = 178/387 (45%), Gaps = 43/387 (11%)
Query: 194 GVEQDNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEG 251
G E+ +P+ +W +D + +GS TI A + RK E
Sbjct: 111 GFERPSPIQAYAWPYLL-----DGRDFIGIAATGSGKTIA----FGVPALMHVRRKMGEK 161
Query: 252 FSFTG-PFLLFLVSSQEKAAKVRSV-CKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEF 309
+ G P +L L ++E A ++ V C+ GI +V L+ G + QI+ L+S +
Sbjct: 162 SAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKSGV-DI 220
Query: 310 LVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL----SKGDTLSLIRQSISGKPHTVVFN 365
++ TP R+ L+ + ++ VS +V+D D + + + +++ Q+ S + TV+F
Sbjct: 221 VIGTPGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVR-QTVMF- 278
Query: 366 DCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDH-- 423
+ T PAV L ++ + +I S ++ A+ + +++ ++VLD
Sbjct: 279 ---SATWPPAVHQLAQEFMDPNPIK--------VVIGSEDLAANHD--VMQIVEVLDDRS 325
Query: 424 ------AYGDHFH-SEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVE 476
A D +H ++ +VL V + + + L+ +G+S + H +
Sbjct: 326 RDSRLVALLDKYHKAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKAL 385
Query: 477 ADGRKRPAVSMIDKDHISTA-ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSF 535
+ ++ MI D S ++ + EVVI + ++ ++YV + R G+ H+F
Sbjct: 386 SLFKEGSCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTF 445
Query: 536 FTKDDAAHAGQMIEILEQCGQVVPDAL 562
FT+++ AG+++ +L + GQVVP AL
Sbjct: 446 FTQENKGLAGELVNVLREAGQVVPPAL 472
>sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=prp5 PE=3 SV=1
Length = 1173
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 151/327 (46%), Gaps = 25/327 (7%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 614 GPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIIVCTP 672
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 673 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQTVLFSATF 732
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V VC ++E+K ++ +++L + Y
Sbjct: 733 PRNMEALARKTLTKPIEIVVGGRSVVAPE--ITQIVEVC-NEEKKFVRLLELLGNLYSTD 789
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHI-KNSVEADGRKRPAVSM 487
+E + L V + L+ L KGY C+ H K+ ++ D +
Sbjct: 790 -ENEDARSLIFVDRQEAADTLLRELMRKGYP------CMSIHGGKDQIDRDSTIEDFKAG 842
Query: 488 IDKDHISTA------ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541
I I+T+ ++++ ++V+ D +++YV R +G +F T+D
Sbjct: 843 IFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQE 902
Query: 542 AHAGQMIEILEQCGQVVPDALRDLCHT 568
++ + + L+Q GQ VP+A++ L +
Sbjct: 903 RYSVDIAKALKQSGQEVPEAVQKLVDS 929
>sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Botryotinia
fuckeliana (strain B05.10) GN=prp5 PE=3 SV=1
Length = 1151
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 145/322 (45%), Gaps = 23/322 (7%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA G+ V + GA I QI L+ E +V TP
Sbjct: 627 GPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGA-EIIVCTP 685
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLDSL-SKGDTLSLIR--QSISGKPHTVVFNDCL 368
R+++L+ S + ++ V+ +V+D D + G +++ +I T++F+ +
Sbjct: 686 GRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQTILFSATM 745
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV + I Q V V ++EK + +++L Y
Sbjct: 746 PRIMDALAKKTLQSPVEIVVGGRSVVAPE--ITQIVEV-REEKEKFHRLLELLGELYN-- 800
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCIVSHIKNSVEADGRKRPAV 485
E + L V + K +L+ L KGY SI G + + D K V
Sbjct: 801 -TDEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKD----QVDRDSTIDDFKAGVV 855
Query: 486 SMIDKDHISTAELEEYEVVIVPDFIIS--MKNYVEILTSMARHTVSGILHSFFTKDDAAH 543
++ ++ L+ ++ +V +F +++YV R +G +F T++ +
Sbjct: 856 PIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEQY 915
Query: 544 AGQMIEILEQCGQVVPDALRDL 565
+ + + LEQ GQ VPD L ++
Sbjct: 916 SVGIAKALEQSGQEVPDRLNEM 937
>sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Gibberella
zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL
31084) GN=PRP5 PE=3 SV=2
Length = 1207
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 150/324 (46%), Gaps = 27/324 (8%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LK G+ V + GA I QI L+ E +V TP
Sbjct: 650 GPIGLIMTPTRELAVQIHKDCKPFLKMMGLRAVCAYGGAPIREQIAELKRGA-EIIVCTP 708
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ + ++ V+ +V+D D + G +++ + +P T++F+
Sbjct: 709 GRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFS--- 765
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYG 426
++P + + L + + + +V +S A I+ + + K + +++L Y
Sbjct: 766 --ATMPRIIDSLTKKVLKNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFHRVLELLGELYD 823
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCIVSHIKNSVEADGRKRP 483
E + L V + K +L+ L KGY SI G + I ++S +D +K
Sbjct: 824 ---RDEDARTLIFVERQEKADDLLKELMMKGYPCMSIHGGKDQI---DRDSTISDFKKG- 876
Query: 484 AVSMIDKDHISTAELE--EYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541
V ++ ++ L+ + ++VI D +++YV R +G+ +F T +
Sbjct: 877 VVPILIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTFVTPEQE 936
Query: 542 AHAGQMIEILEQCGQVVPDALRDL 565
A + + LEQ GQ +PD L ++
Sbjct: 937 NCAPGIAKALEQSGQPIPDRLNEM 960
>sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=prp5
PE=3 SV=1
Length = 1114
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 145/322 (45%), Gaps = 23/322 (7%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA G+ V + GA I QI L+ E +V TP
Sbjct: 556 GPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGA-EIIVCTP 614
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLDSL-SKGDTLSLIR--QSISGKPHTVVFNDCL 368
R+++L+ S + ++ V+ +V+D D + G +++ +I T++F+ +
Sbjct: 615 GRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQTILFSATM 674
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV + I Q V V ++EK + +++L Y
Sbjct: 675 PRIMDALAKKTLQSPVEIVVGGRSVVAPE--ITQIVEV-REEKEKFHRLLELLGELYN-- 729
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCIVSHIKNSVEADGRKRPAV 485
E + L V + K +L+ L KGY SI G + + D K V
Sbjct: 730 -ADEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKD----QVDRDSTIDDFKAGVV 784
Query: 486 SMIDKDHISTAELEEYEVVIVPDFIIS--MKNYVEILTSMARHTVSGILHSFFTKDDAAH 543
++ ++ L+ ++ +V +F +++YV R +G +F T++ +
Sbjct: 785 PIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEQY 844
Query: 544 AGQMIEILEQCGQVVPDALRDL 565
+ + + LEQ GQ VP+ L ++
Sbjct: 845 SVGIAKALEQSGQEVPERLNEM 866
>sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Coccidioides
immitis (strain RS) GN=PRP5 PE=3 SV=1
Length = 1197
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 149/327 (45%), Gaps = 25/327 (7%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 632 GPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIIVCTP 690
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP--HTVVFNDCL 368
R++ L+ S + ++ V+ +V+D D + + + IS +P TV+F+
Sbjct: 691 GRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRPSRQTVLFSATF 750
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV +Q I Q V V + K ++ +++L + Y D
Sbjct: 751 PRNMEALARKTLTKPVEIIVGGRSVVAQE--ITQIVEV-RPENTKFVRLLELLGNLYSDD 807
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHI-KNSVEADGRKRPAVSM 487
++E + L V + L+ L KGY C+ H K+ V+ D +
Sbjct: 808 -NNEDARALIFVDRQEAADGLLRDLMRKGYP------CMSIHGGKDQVDRDSTIDDFKAG 860
Query: 488 IDKDHISTA------ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541
I I+T+ ++++ ++VI D +++YV R +G +F T++
Sbjct: 861 IFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQE 920
Query: 542 AHAGQMIEILEQCGQVVPDALRDLCHT 568
++ + + L+Q GQ VP+A++ + +
Sbjct: 921 RYSVDIAKALKQSGQSVPEAVQKMVDS 947
>sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=DBP3 PE=3 SV=1
Length = 585
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 150/327 (45%), Gaps = 29/327 (8%)
Query: 259 LLFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEP-EFLVSTPER 316
+L + ++E A + ++ K K+ GI + L+ G + Q+ L P +V TP R
Sbjct: 242 VLVIAPTRELAIQTEENMAKLGKSMGIGMICLYGGVSKQEQVRLLNQSPPVRIVVGTPGR 301
Query: 317 LLKLVSLKAIDVSGVSLLVVDRLDS-LSKG---DTLSLI---RQSISGKPHTVVFNDCLT 369
+L + ++D+SGV+ LV+D D L KG D ++I + G+ HT +F +
Sbjct: 302 VLDMARDGSLDLSGVTYLVLDEADRMLDKGFEPDIRAIIGMCKSREEGR-HTSMF----S 356
Query: 370 YTSVPAVQNLLLGSIN---RLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYG 426
T PAV+ L +N R+++ S + + Q+V V A + K ++ D
Sbjct: 357 ATWPPAVRGLAESFMNGPVRVTVGSDELSANRRVEQTVEVLA---DGYAKERRLNDFLRS 413
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS-----TGSNCIVSHIKNSVEADGRK 481
+ K+L + Q + TL+ G+ +S G N ++ ++ A+
Sbjct: 414 VNAQRSKDKILIFALYKKEAQRIEQTLRRGGFKVSGIHGDLGQNERIASLERFKSAETPL 473
Query: 482 RPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541
A + + ++ E V+ F +++++YV + R +G +FFT+ D
Sbjct: 474 LVATDVAARG----LDIPNVEHVVNYTFPLTIEDYVHRIGRTGRGGKTGKSLTFFTEMDK 529
Query: 542 AHAGQMIEILEQCGQVVPDALRDLCHT 568
AHAG++I +L+ Q VPDAL T
Sbjct: 530 AHAGELIRVLKDADQKVPDALTKFPTT 556
>sp|Q54CD6|DDX5_DICDI Probable ATP-dependent RNA helicase ddx5 OS=Dictyostelium
discoideum GN=ddx5 PE=3 SV=1
Length = 697
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 211 WKCYSSAKDILETS--GSSSTIVQIAWIVATAADSIARK-------EKEGFSFTGPFLLF 261
W + DI+ TS GS T+ +A ++ + R EK +TG +L
Sbjct: 237 WPAILTGHDIIGTSLPGSGKTLGYLAPMIPHCLARVDRGGKNKITGEKAPKQYTGILVLV 296
Query: 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKL 320
LV ++E +V S + + FGI T ++ G + + QI L +P+ L+STP RL+++
Sbjct: 297 LVPTRELGLQVHSNTLIITQLFGIKTSVIYGGISKNLQIEQLEKEKPQILISTPGRLIEM 356
Query: 321 VSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVF 364
+ +D+S V++LV+D D LSKG L IR I ++F
Sbjct: 357 IENGHVDLSSVTMLVLDEADKMLSKGLIPQLKQIRGQIRPDSQNILF 403
>sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus
niger (strain CBS 513.88 / FGSC A1513) GN=prp5 PE=3 SV=2
Length = 1180
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 148/325 (45%), Gaps = 25/325 (7%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 620 GPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA-EIIVCTP 678
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 679 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATF 738
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V +D++K ++ +++L + Y
Sbjct: 739 PRNMEALARKTLTKPIEIVVGGKSVVAPE--ITQIVEV-RNDDQKFVRLLELLGNLYSSD 795
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHI-KNSVEADGRKRPAVSM 487
+E + L V + L+ L KGY C+ H K+ ++ D +
Sbjct: 796 -ENEDARALIFVDRQEAADALLRELMRKGYP------CMSIHGGKDQIDRDSTIEDFKAG 848
Query: 488 IDKDHISTA------ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541
I I+T+ ++++ ++V+ D +++YV R +G +F T+D
Sbjct: 849 IFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQE 908
Query: 542 AHAGQMIEILEQCGQVVPDALRDLC 566
++ + + L+Q GQ VP+ ++ L
Sbjct: 909 RYSVDIAKALKQSGQKVPEPVQKLV 933
>sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=prp5 PE=3 SV=1
Length = 1211
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 170/387 (43%), Gaps = 35/387 (9%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS TI A+++ R ++ +
Sbjct: 596 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTI---AFLIPMFRH--IRDQRPLENME 647
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 648 GPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIVVCTP 706
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 707 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATF 766
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V D K ++ +++L + Y D
Sbjct: 767 PRNMEALARKSLTKPIEIVVGGKSVVAPE--ITQIVEVRNEDT-KFVRLLEILGNLYSDD 823
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHI-KNSVEADGRKRPAVSM 487
+ E + L V + L+ L KGY C+ H K+ ++ D +
Sbjct: 824 AN-EDARALIFVDRQEAADTLLRELMRKGYP------CMSIHGGKDQIDRDSTIEDFKAG 876
Query: 488 IDKDHISTA------ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541
I I+T+ ++++ ++V+ D +++YV R +G +F T++
Sbjct: 877 IFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQE 936
Query: 542 AHAGQMIEILEQCGQVVPDALRDLCHT 568
++ + + L Q GQ VP+ ++ + +
Sbjct: 937 RYSVDIAKALRQSGQKVPEPVQKMVDS 963
>sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana
sylvestris PE=2 SV=1
Length = 607
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 91/398 (22%), Positives = 168/398 (42%), Gaps = 47/398 (11%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDI--LETSGSSSTIVQIAWIVATAADS 243
I M G P+ SW I +DI + +GS T+ +++
Sbjct: 156 IVREMHQAGFSAPTPIQAQSWPIAL-----QGRDIVAIAKTGSGKTL---GYLMPAFIHL 207
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRS-VCKPLKAFGIHTVSLHPGAAIDHQITGL 302
R++ GP +L L ++E A ++++ K K+ I L+ GA Q+ L
Sbjct: 208 QQRRKNPQL---GPTILVLSPTRELATQIQAEAVKFGKSSRISCTCLYGGAPKGPQLREL 264
Query: 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTV 362
S + +V+TP RL ++ ++ + + VS LV+D D + IR+ + P
Sbjct: 265 -SRGVDIVVATPGRLNDILEMRRVSLGQVSYLVLDEADRMLDMGFEPQIRKIVKEVP--- 320
Query: 363 VFNDCLTYTSVPA------VQNLLLGSI--NRLSLNQSVASQSACIIQSVNVCASDE--- 411
V L YT+ +LL+ S+ N ++++ VA++S I Q + V E
Sbjct: 321 VQRQTLMYTATWPKGVRKIAADLLVNSVQVNIGNVDELVANKS--ITQHIEVVLPMEKQR 378
Query: 412 --EKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVS 469
E+IL+ EP + I K + +S + + +
Sbjct: 379 RVEQILR-------------SKEPGSKIIIFCSTKKMCDQLSRNLTRNFGAAAIHGDKSQ 425
Query: 470 HIKNSVEADGRKRPAVSMIDKDHISTA-ELEEYEVVIVPDFIISMKNYVEILTSMARHTV 528
++ V + R + ++ D + ++++ VVI DF +++YV + R
Sbjct: 426 GERDYVLSQFRAGRSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGA 485
Query: 529 SGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDLC 566
SG+ ++FF+ D+ HA ++++LE Q VP LRD+
Sbjct: 486 SGLAYTFFSDQDSKHALDLVKVLEGANQCVPTELRDMA 523
>sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=prp5 PE=3 SV=1
Length = 1193
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 170/387 (43%), Gaps = 35/387 (9%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS TI A+++ R ++ +
Sbjct: 578 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTI---AFLIPMFRH--IRDQRPLENME 629
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 630 GPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIVVCTP 688
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 689 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATF 748
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V D K ++ +++L + Y D
Sbjct: 749 PRNMEALARKSLTKPIEIVVGGKSVVAPE--ITQIVEVRNEDT-KFVRLLEILGNLYSDD 805
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHI-KNSVEADGRKRPAVSM 487
+ E + L V + L+ L KGY C+ H K+ ++ D +
Sbjct: 806 AN-EDARALIFVDRQEAADTLLRELMRKGYP------CMSIHGGKDQIDRDSTIEDFKAG 858
Query: 488 IDKDHISTA------ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541
I I+T+ ++++ ++V+ D +++YV R +G +F T++
Sbjct: 859 IFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQE 918
Query: 542 AHAGQMIEILEQCGQVVPDALRDLCHT 568
++ + + L Q GQ VP+ ++ + +
Sbjct: 919 RYSVDIAKALRQSGQKVPEPVQKMVDS 945
>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp.
japonica GN=Os01g0172200 PE=2 SV=1
Length = 708
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 142/318 (44%), Gaps = 18/318 (5%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP +L L ++E A +++ K ++ I +V L+ GA Q+ L + +V+TP
Sbjct: 252 GPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGA-DIVVATP 310
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ---SISGKPHTVVFNDCLTYT 371
RL ++ ++ + + VS LV+D D + IR+ + K T++F
Sbjct: 311 GRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKE 370
Query: 372 SVPAVQNLLLGSI--NRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHF 429
+LL + N + +Q VA++S I Q V+V + EK + Q+L
Sbjct: 371 VRKIASDLLSNPVQVNIGNTDQLVANKS--ITQYVDVI-TPPEKSRRLDQILRS------ 421
Query: 430 HSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMID 489
EP + I + + ++ + Y S ++SV ++ R ++
Sbjct: 422 -QEPGSKIIIFCSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVA 480
Query: 490 KDHISTA-ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMI 548
D + ++++ VV+ DF +++YV + R +G+ ++FF D+ +A ++
Sbjct: 481 TDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLV 540
Query: 549 EILEQCGQVVPDALRDLC 566
+ILE Q V LRD+
Sbjct: 541 KILEGANQSVSQQLRDMV 558
>sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=prp5 PE=3 SV=1
Length = 1192
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 147/327 (44%), Gaps = 25/327 (7%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 630 GPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA-EIVVCTP 688
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 689 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATF 748
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V D K ++ +++L + Y D
Sbjct: 749 PRNMEALARKALTKPIEIIVGGRSVVAPE--ITQIVEVRNEDT-KFVRLLEILGNLYSDD 805
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHI-KNSVEADGRKRPAVSM 487
+ E + L V + L+ L KGY C+ H K+ ++ D +
Sbjct: 806 AN-EDARSLIFVERQEAADALLRELMRKGYP------CMSIHGGKDQIDRDSTIEDFKAG 858
Query: 488 IDKDHISTA------ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541
I I+T+ ++++ ++V+ D +++YV R +G +F T++
Sbjct: 859 IFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQE 918
Query: 542 AHAGQMIEILEQCGQVVPDALRDLCHT 568
++ + + L+Q GQ VP+ ++ + +
Sbjct: 919 RYSVDIAKALKQSGQQVPEPVQKMVDS 945
>sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=prp5 PE=3 SV=1
Length = 1186
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 150/333 (45%), Gaps = 37/333 (11%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 627 GPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA-EIIVCTP 685
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 686 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRPDKQTVLFSATF 745
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVA------SQSACIIQSVNVCASDEEKILKGIQVLD 422
+ ++ R +LN+ V S A I + S+++K ++ +++L
Sbjct: 746 PRN---------MEALARKTLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLELLG 796
Query: 423 HAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHI-KNSVEADGRK 481
+ Y +E + L V + L+ L KGY C+ H K+ ++ D
Sbjct: 797 NLYSTD-ENEDARALIFVERQEGADTLLRELMRKGYP------CMSIHGGKDQIDRDSTI 849
Query: 482 RPAVSMIDKDHISTA------ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSF 535
+ I I+T+ ++++ ++V+ D +++YV R +G +F
Sbjct: 850 EDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF 909
Query: 536 FTKDDAAHAGQMIEILEQCGQVVPDALRDLCHT 568
T+D ++ + + L+Q GQ VP+ ++ + +
Sbjct: 910 LTEDQERYSVDIAKALKQSGQSVPEPVQKMVDS 942
>sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana
GN=RH40 PE=2 SV=1
Length = 1088
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 147/349 (42%), Gaps = 74/349 (21%)
Query: 253 SFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG----IHTVSLHPGAAIDHQITGLRSCEPE 308
S GP +L L ++E A +++ L+ FG I L+ GA Q+ L +
Sbjct: 504 SRNGPTVLILAPTRELATQIQDEA--LR-FGRSSRISCTCLYGGAPKGPQLKELERGA-D 559
Query: 309 FLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFN 365
+V+TP RL ++ +K ID VSLLV+D D + IR+ ++ P T+++
Sbjct: 560 IVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYT 619
Query: 366 DCLTYTSVPAVQNLL-------LGSINRLSLNQSVASQSACIIQSVNVCASDE-----EK 413
+LL +G ++ L+ N++ I Q V V E E+
Sbjct: 620 ATWPKEVRKIASDLLVNPVQVNIGRVDELAANKA-------ITQYVEVVPQMEKERRLEQ 672
Query: 414 ILK----GIQVL---------DH---AYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKG 457
IL+ G +V+ DH + G HF + +V K Q + +
Sbjct: 673 ILRSQERGSKVIIFCSTKRLCDHLARSVGRHFGA-------VVIHGDKTQGERDWVLNQ- 724
Query: 458 YSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYV 517
+G +C++ I V A G ++++ VVI DF +++YV
Sbjct: 725 --FRSGKSCVL--IATDVAARG----------------LDIKDIRVVINYDFPTGVEDYV 764
Query: 518 EILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDLC 566
+ R +G+ +FFT+ D +A +I++LE Q VP +RD+
Sbjct: 765 HRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIA 813
>sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum
GN=helB1 PE=2 SV=1
Length = 1151
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 143/332 (43%), Gaps = 40/332 (12%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G L + ++E A ++ CK K G+ T ++ GA+I QI L+ + +V TP
Sbjct: 582 GMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGA-DIVVCTP 640
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVD---RLDSLSKGDTLSLIRQSISGKPHTVVFNDCL 368
R++ ++ + + ++ V+ LV+D R+ + G ++ I SI T++F
Sbjct: 641 GRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMF---- 696
Query: 369 TYTSVPAVQNLLLGSINR----LSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHA 424
+ T P V+N+ +N+ ++ +S+ S + I Q V V + E + + I++L
Sbjct: 697 SATFPPKVENVAKKILNKPLEIIAGGRSIVS--SDIEQFVEVRPT-ETRFRRLIELLSIW 753
Query: 425 YGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI--------STGSNCIVSHIKNSVE 476
Y ++L + NL L Y T + +S KN V+
Sbjct: 754 YHKG------QILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVK 807
Query: 477 ADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFF 536
P S ++++ +V+ D +++YV + R G ++F
Sbjct: 808 TILIATPLAS-------RGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFI 860
Query: 537 TKDDAAHAGQMIEILEQCGQVVPDALRDLCHT 568
T D+ + +I+ LEQ G VPD LR L T
Sbjct: 861 TPDEERFSSSIIKALEQSGSKVPDELRKLNDT 892
>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46
PE=2 SV=1
Length = 1018
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/413 (20%), Positives = 172/413 (41%), Gaps = 37/413 (8%)
Query: 166 GQACEKLDCPSKFLILCLNAIE--NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL-- 221
G+ C K P K + C +++ NA++ E+ P+ + S +D++
Sbjct: 332 GKGCPK---PIKTWVQCGISMKVLNALKKHNYEKPTPIQAQAI-----PAIMSGRDLIGI 383
Query: 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280
+GS TI + + D E EG P + + ++E A ++ CK K
Sbjct: 384 AKTGSGKTIAFLLPMFRHILDQRPVGEAEG-----PLAVIMTPTRELALQITKECKKFSK 438
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL---KAIDVSGVSLLVVD 337
+ + V ++ G I QI L+ E +V TP R++ ++ + ++ V+ +V+D
Sbjct: 439 SLALRVVCVYGGTGISEQIAELKRG-AEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVID 497
Query: 338 RLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA 394
D + G ++R + +P TV+F+ T + +L + +SV
Sbjct: 498 EADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVV 557
Query: 395 SQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLK 454
++ + +E+K LK +++L H + E V+ V K L+ L
Sbjct: 558 CSD---VEQHVIVIEEEKKFLKLLEILGH------YQEKGSVIIFVDKQEHADGLLKDLM 608
Query: 455 CKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIIS-- 512
Y + I + ++S+ D K A ++ ++ L+ ++++V ++
Sbjct: 609 KASYPCMSLHGGIDQYDRDSIIND-FKNGACRLLVATSVAARGLDVKQLILVVNYSCPNH 667
Query: 513 MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV R G ++F T+ A ++G +++ LE G VP L L
Sbjct: 668 YEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGDILKALELSGSSVPAELEQL 720
>sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP3 PE=3 SV=2
Length = 534
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 140/290 (48%), Gaps = 25/290 (8%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS- 341
G+ V+++ G D QI +++ +V+TP RL+ L++ A+D+S + LV+D D
Sbjct: 226 GLTCVAIYGGVPKDQQIKAVKTAS--VVVATPGRLVDLLNDGAVDLSTIDYLVLDEADRM 283
Query: 342 LSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINR---LSL-NQSVAS 395
L KG + + I + + T++F T T V+ L +N+ +S+ N+ +
Sbjct: 284 LEKGFEEDIKNIIGCTNKQRQTLMF----TATWPKEVRELAATFMNKAVKVSIGNRDELA 339
Query: 396 QSACIIQSVNVC-ASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLK 454
+ I Q+V V D+E+ L +Q+L D K+L + + + L+
Sbjct: 340 ANKRITQTVEVMDPRDKERRL--LQLLRQYGSDQ------KILVFALYKKEATRVEAMLR 391
Query: 455 CKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELE--EYEVVIVPDFIIS 512
G++++ + +S + + D KR +++ ++ L+ +VVI F ++
Sbjct: 392 RSGFNVA-AIHGDLSQQQRTSALDSFKRGDSNLLLATDVAARGLDIPNVKVVINLTFPLT 450
Query: 513 MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDAL 562
+++YV + R +GI H+ FT+ + +G ++ +L GQ VPD L
Sbjct: 451 VEDYVHRIGRTGRAGQTGIAHTLFTEHEKHLSGALMNVLRGAGQPVPDEL 500
>sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helicase prp11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp11 PE=3 SV=1
Length = 1014
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 157/364 (43%), Gaps = 26/364 (7%)
Query: 215 SSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272
+S +D++ +GS TI + + D K EG P + + ++E A ++
Sbjct: 453 TSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEG-----PIAIIMTPTRELAVQI 507
Query: 273 RSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331
CKP LK I + GA I QI L+ E +V TP R++ ++S A V+ +
Sbjct: 508 FRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGA-EIVVCTPGRMIDVLSANAGRVTNL 566
Query: 332 ---SLLVVDRLDSL-SKGDTLSLIR--QSISGKPHTVVFNDCLTYTSVPAVQNLLLGSIN 385
+ LV+D D + G ++R +I TV+F+ + P L +
Sbjct: 567 HRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFS-----ATFPRAMEALARKVL 621
Query: 386 RLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKD 443
+ + +V +S A ++ + +E K + +++L Y + ++ L V +
Sbjct: 622 KKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGELYNNQLD---VRTLVFVDRQ 678
Query: 444 SKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTA-ELEEYE 502
L+S L +GY+ ++ H ++S +D + +I ++ +++ +
Sbjct: 679 ESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQ 738
Query: 503 VVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDAL 562
+V+ D M++YV + R +G+ +F T + +A + + L+ Q VP L
Sbjct: 739 LVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKEL 798
Query: 563 RDLC 566
+ L
Sbjct: 799 QTLA 802
>sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=prp5 PE=3 SV=1
Length = 1181
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 149/333 (44%), Gaps = 37/333 (11%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 622 GPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIVVCTP 680
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 681 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANVRPDRQTVLFSATF 740
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVA------SQSACIIQSVNVCASDEEKILKGIQVLD 422
+ ++ R +LN+ V S A I + ++++K ++ +++L
Sbjct: 741 PRN---------MEALARKTLNKPVEIVVGGKSVVAPEITQIVEVRNEDKKFVRLLELLG 791
Query: 423 HAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHI-KNSVEADGRK 481
+ Y +E + L V + L+ L KGY C+ H K+ ++ D
Sbjct: 792 NLYSSD-ENEDARALIFVERQEAADTLLRELMRKGYP------CMSIHGGKDQIDRDSTI 844
Query: 482 RPAVSMIDKDHISTA------ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSF 535
+ I I+T+ ++++ ++V+ D +++YV R +G +F
Sbjct: 845 EDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF 904
Query: 536 FTKDDAAHAGQMIEILEQCGQVVPDALRDLCHT 568
T+D + + + L+Q GQ VP+ ++ + +
Sbjct: 905 LTEDQERFSVDIAKALKQSGQKVPEPVQQMVDS 937
>sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana
GN=RH5 PE=1 SV=1
Length = 537
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 144/319 (45%), Gaps = 27/319 (8%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V + + G+ ++ ++ G++ QI+ +RS + ++ TP
Sbjct: 192 PTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGV-DIVIGTPG 250
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPA 375
RL L+ + +S VS +V+D D + +R +S N A
Sbjct: 251 RLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNT------NKVRQMVMFSA 304
Query: 376 VQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH------- 428
L +++L+ + II SV++ A+ + +++ I+VLD D
Sbjct: 305 TWPL---DVHKLAQEFMDPNPIKVIIGSVDLAANHD--VMQIIEVLDERARDQRLIALLE 359
Query: 429 -FH-SEPLKVLYIVGKDSKFQNLVSTLKCKGY-SISTGSNCIVSHIKNSVEADGRKRPAV 485
+H S+ +VL + + L L+ +G+ ++S N S S+ K +
Sbjct: 360 KYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSL--FKEGSC 417
Query: 486 SMIDKDHISTAELE--EYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAH 543
++ ++ L+ + EVVI F ++ ++YV + R G+ H+FFT +
Sbjct: 418 PLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGL 477
Query: 544 AGQMIEILEQCGQVVPDAL 562
AG+++ +L + GQVVP L
Sbjct: 478 AGELVNVLREAGQVVPADL 496
>sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana
GN=RH30 PE=2 SV=2
Length = 591
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/329 (21%), Positives = 146/329 (44%), Gaps = 38/329 (11%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP +L L ++E A +++ + G+ + ++ GA QI LR E +++TP
Sbjct: 238 GPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGV-EIVIATP 296
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP--HTVVFN------ 365
RL+ ++ + ++ V+ LV+D D + IR+ +S +P T++++
Sbjct: 297 GRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPRE 356
Query: 366 -DCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEE-----KILKGIQ 419
+ L + ++GS + L NQS+ Q + + + E+ +LK Q
Sbjct: 357 VETLARQFLRDPYKAIIGSTD-LKANQSIN-------QVIEIVPTPEKYNRLLTLLK--Q 406
Query: 420 VLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADG 479
++D + K+L V + L+ G+ ++ V A+
Sbjct: 407 LMDGS----------KILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEF 456
Query: 480 RKRPAVSMIDKDHISTA-ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTK 538
+ + M D + ++++ + V+ DF ++++Y+ + R G+ +FFT
Sbjct: 457 KSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTH 516
Query: 539 DDAAHAGQMIEILEQCGQVVPDALRDLCH 567
D+A A ++++IL++ GQVVP L L
Sbjct: 517 DNAKFARELVKILQEAGQVVPPTLSALVR 545
>sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP3 PE=3 SV=1
Length = 504
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 157/379 (41%), Gaps = 55/379 (14%)
Query: 228 STIVQIAWIVATAADSIARKEKEG----FSFTGPFLLFLVSSQEKAAKVRS-VCKPLK-- 280
+ I ++W A + + G F+F P + +V+S +K++ V+ V P +
Sbjct: 116 TPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTREL 175
Query: 281 -------------AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
A G+ + ++ G D Q LR + +V+TP RLL L+ ++D
Sbjct: 176 ASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQ--VVVATPGRLLDLIEEGSVD 233
Query: 328 VSGVSLLVVDRLDS-LSKG---DTLSLIRQSISGKPHTVVFNDCL---------TYTSVP 374
+S V+ LV+D D L KG D +IRQ+ S T++F ++ S P
Sbjct: 234 LSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEP 293
Query: 375 AVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPL 434
+ +G+ + LS N+ I Q V V D + K + L Y HS P
Sbjct: 294 V--KVSIGNRDELSANKR-------ITQIVEVV--DPFRKEKKLLELLKKY----HSGPT 338
Query: 435 K---VLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKD 491
K VL + + LK GY ++ + + + + ++ D
Sbjct: 339 KNDKVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATD 398
Query: 492 HISTA-ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEI 550
+ ++ + VI F +++++YV + R G H+ FT+ + AG ++ +
Sbjct: 399 VAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNV 458
Query: 551 LEQCGQVVPDALRDL-CHT 568
L GQ VP+ L+ HT
Sbjct: 459 LNGAGQPVPEELKKFGTHT 477
>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46
PE=2 SV=1
Length = 1032
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 89/417 (21%), Positives = 173/417 (41%), Gaps = 45/417 (10%)
Query: 166 GQACEKLDCPSKFLILCLNAIE--NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL-- 221
G+ C K P K + C +++ N+++ G E+ P+ + S +D++
Sbjct: 364 GKGCPK---PIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAI-----PAIMSGRDLIGI 415
Query: 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280
+GS TI + + D + +E EG P + + ++E A ++ CK K
Sbjct: 416 AKTGSGKTIAFLLPMFRHIMDQRSLEEGEG-----PIAVIMTPTRELALQITKECKKFSK 470
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLV---SLKAIDVSGVSLLVVD 337
G+ V ++ G I QI L+ E +V TP R++ ++ S + ++ V+ +V+D
Sbjct: 471 TLGLRVVCVYGGTGISEQIAELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLD 529
Query: 338 RLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA 394
D + G ++R + +P TV+F+ + P L+ I + V
Sbjct: 530 EADRMFDMGFEPQVMRIVDNVRPDRQTVMFS-----ATFPRAMEALVRRILSKPIEVQVG 584
Query: 395 SQSACIIQSVNVCASDEEKIL----KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLV 450
+S VC+ E++++ + + H+ E V+ V K L+
Sbjct: 585 GRSV-------VCSDVEQQVIVIEEEKKFLKLLELLGHYQ-ESGSVIIFVDKQEHADGLL 636
Query: 451 STLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFI 510
L Y + I + ++S+ D K ++ ++ L+ +++V ++
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIIND-FKNGTCKLLVATSVAARGLDVKHLILVVNYS 695
Query: 511 IS--MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV R G ++F T+D A +AG +I+ LE G VP L L
Sbjct: 696 CPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKL 752
>sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP3 PE=3 SV=1
Length = 523
Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 79/371 (21%), Positives = 157/371 (42%), Gaps = 53/371 (14%)
Query: 228 STIVQIAWIVATAADSIARKEKEG----FSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF- 282
+ I +AW + + + G F+F P + L++ Q+K V P +
Sbjct: 136 TPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELA 195
Query: 283 --------------GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDV 328
G+ ++ G D Q L+ + +V+TP RLL L+ ++D+
Sbjct: 196 SQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKSQ--VVVATPGRLLDLLQEGSVDL 253
Query: 329 SGVSLLVVDRLDS-LSKG---DTLSLIRQSISGKPHTVVFNDCL---------TYTSVPA 375
S V+ LV+D D L KG D ++IR++ + K T++F T+ + P
Sbjct: 254 SQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPI 313
Query: 376 VQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLK 435
+ +G+ ++L+ N+ + I++ V+ E K+L+ ++ +HS P K
Sbjct: 314 --KVSIGNTDQLTANKRITQ----IVEVVD-PRGKERKLLELLK--------KYHSGPKK 358
Query: 436 ---VLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDH 492
VL + + LK GY+I+ + + + + + ++ D
Sbjct: 359 NEKVLIFALYKKEAARVERNLKYNGYNIAAIHGDLSQQQRTQALNEFKSGKSNLLLATDV 418
Query: 493 ISTA-ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEIL 551
+ ++ + VI F +++++YV + R +G H+ FT+ + AG ++ +L
Sbjct: 419 AARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVL 478
Query: 552 EQCGQVVPDAL 562
Q VP+ L
Sbjct: 479 NGANQPVPEDL 489
>sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophila melanogaster GN=Rm62
PE=1 SV=3
Length = 719
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 140/330 (42%), Gaps = 32/330 (9%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFG----IHTVSLHPGAAIDHQITGL-RSCEPEFL 310
GP L L ++E A +++ V FG + + GA Q+ L R CE +
Sbjct: 354 GPIALVLAPTRELAQQIQQVAT---EFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE--IV 408
Query: 311 VSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KPHTVVFNDCLT 369
++TP RL+ +S + ++ + LV+D D + IR+ +S +P T
Sbjct: 409 IATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSAT 468
Query: 370 YT-SVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC--ASDEEKILKGIQVLDHAYG 426
+ V + LG+ ++++ S + I Q V+VC S EEK+ +L Y
Sbjct: 469 WPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKT---LLSDIYD 525
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSH-IKNSVEADGRKRPAV 485
P K++ V + NLV ++ S G C H K+ E D R
Sbjct: 526 TS--ESPGKIIIFVETKRRVDNLVRFIR------SFGVRCGAIHGDKSQSERDFVLREFR 577
Query: 486 SMIDKDHIST------AELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKD 539
S ++T +++ + VI D+ + ++Y+ + R G +FFTK+
Sbjct: 578 SGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKN 637
Query: 540 DAAHAGQMIEILEQCGQVVPDALRDLCHTS 569
+A A ++++L + Q + AL +L S
Sbjct: 638 NAKQAKALVDVLREANQEINPALENLARNS 667
>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana
GN=RH42 PE=1 SV=2
Length = 1166
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 144/328 (43%), Gaps = 36/328 (10%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E ++ S + K GI V ++ G+ + QI+ L+ E +V TP
Sbjct: 602 GPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGT-EIVVCTP 660
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGKPHTVVFNDCL 368
R++ ++ S K ++ V+ LV+D D + ++ I Q+I + TV+F+
Sbjct: 661 GRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATF 720
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ +L + +SV ++ I Q V V + ++ L+ +++L
Sbjct: 721 PRQVETLARKVLNKPVEIQVGGRSVVNKD--ITQLVEV-RPESDRFLRLLELLGE----- 772
Query: 429 FHSEPLKVLYIVGK----DSKFQNLVST----LKCKGYSISTGSNCIVSHIKNSVEADGR 480
SE K+L V D+ +++++ + L G T +S KN V
Sbjct: 773 -WSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDV----- 826
Query: 481 KRPAVSMIDKDHISTAELE--EYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTK 538
+++ ++ L+ E E+V+ D ++YV + R G +F ++
Sbjct: 827 ----CNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISE 882
Query: 539 DDAAHAGQMIEILEQCGQVVPDALRDLC 566
DDA +A +++ LE Q VPD L+ L
Sbjct: 883 DDAKYAPDLVKALELSEQPVPDDLKALA 910
>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46
PE=1 SV=2
Length = 1031
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/417 (21%), Positives = 172/417 (41%), Gaps = 45/417 (10%)
Query: 166 GQACEKLDCPSKFLILCLNAIE--NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL-- 221
G+ C K P K + C +++ N+++ G E+ P+ + S +D++
Sbjct: 364 GKGCPK---PIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAI-----PAIMSGRDLIGI 415
Query: 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280
+GS TI + + D + +E EG P + + ++E A ++ CK K
Sbjct: 416 AKTGSGKTIAFLLPMFRHIMDQRSLEEGEG-----PIAVIMTPTRELALQITKECKKFSK 470
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLV---SLKAIDVSGVSLLVVD 337
G+ V ++ G I QI L+ E +V TP R++ ++ S + ++ V+ +V+D
Sbjct: 471 TLGLRVVCVYGGTGISEQIAELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLD 529
Query: 338 RLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA 394
D + G ++R + +P TV+F+ + P L I + V
Sbjct: 530 EADRMFDMGFEPQVMRIVDNVRPDRQTVMFS-----ATFPRAMEALARRILSKPIEVQVG 584
Query: 395 SQSACIIQSVNVCASDEEKIL----KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLV 450
+S VC+ E++++ + + H+ E V+ V K L+
Sbjct: 585 GRSV-------VCSDVEQQVIVIEEEKKFLKLLELLGHYQ-ESGSVIIFVDKQEHADGLL 636
Query: 451 STLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFI 510
L Y + I + ++S+ D K ++ ++ L+ +++V ++
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIIND-FKNGTCKLLVATSVAARGLDVKHLILVVNYS 695
Query: 511 IS--MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV R G ++F T+D A +AG +I+ LE G VP L L
Sbjct: 696 CPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKL 752
>sp|A7TJ36|DBP3_VANPO ATP-dependent RNA helicase DBP3 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DBP3 PE=3 SV=1
Length = 530
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 132/299 (44%), Gaps = 25/299 (8%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS- 341
G+ ++ G D Q T L+ + +V+TP RLL L+ A ++S V+ LV+D D
Sbjct: 217 GLECCCVYGGVPKDEQRTQLKRSQ--VVVATPGRLLDLIQEGAANLSNVNYLVLDEADRM 274
Query: 342 LSKG---DTLSLIRQSISGKPHTVVFNDC-------LTYTSVPAVQNLLLGSINRLSLNQ 391
L KG D ++IR++ S T++F L T + + + +G+ + LS N+
Sbjct: 275 LEKGFEEDIKNIIRETKSTGRQTLMFTATWPKEVRELASTFMNSPIKVSIGNTDELSANK 334
Query: 392 SVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVS 451
+ I++ ++ E K+L+ ++ + KVL + +
Sbjct: 335 RITQ----IVEVIDPFKK-ERKLLELLKKYQSG-----SKKDDKVLIFALYKKEAARVER 384
Query: 452 TLKCKGYSISTGSNCIVSHIK-NSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFI 510
L GY +S + + N+++ R ++ + ++ + VI F
Sbjct: 385 NLNYNGYKVSAIHGDLSQQQRTNALDEFKTGRSSILLATDVAARGLDIPNVKTVINLTFP 444
Query: 511 ISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL-CHT 568
+++++YV + R +G H+ FT+ + AG ++ +L GQ VP+ L+ HT
Sbjct: 445 LTVEDYVHRIGRTGRAGKTGTAHTLFTEQEKHLAGSLVNVLNGAGQPVPEELKKFGTHT 503
>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp.
japonica GN=Os01g0549400 PE=2 SV=2
Length = 792
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 137/331 (41%), Gaps = 42/331 (12%)
Query: 255 TGPFLLFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGL-RSCEPEFLVS 312
+GP +L L ++E A ++ K ++ I + L+ GA Q+ L R + +V+
Sbjct: 221 SGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLDRGVD--VVVA 278
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ---SISGKPHTVVFNDCLT 369
TP RL ++ ++ I + VS LV+D D + IR+ I + T+++
Sbjct: 279 TPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWP 338
Query: 370 YTSVPAVQNLL-------LGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLD 422
++LL +GS++ L N ++ I S EK+ + Q+L
Sbjct: 339 KEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPS--------EKLRRLEQIL- 389
Query: 423 HAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK-GYSISTGSNC------IVSHIKNSV 475
KVL L TL + G S G ++SH ++
Sbjct: 390 -----RSQDSGSKVLIFCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLSHFRSG- 443
Query: 476 EADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSF 535
+ P + D ++++ VVI DF +++YV + R +G+ ++F
Sbjct: 444 -----RSPILVATDV-AARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTF 497
Query: 536 FTKDDAAHAGQMIEILEQCGQVVPDALRDLC 566
F D+ +A +I+ILE Q VP L D+
Sbjct: 498 FCDQDSKYAADLIKILEGANQRVPRDLADMA 528
>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46
PE=1 SV=2
Length = 1032
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/417 (21%), Positives = 172/417 (41%), Gaps = 45/417 (10%)
Query: 166 GQACEKLDCPSKFLILCLNAIE--NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL-- 221
G+ C K P K + C +++ N+++ G E+ P+ + S +D++
Sbjct: 364 GKGCPK---PIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAI-----PAIMSGRDLIGI 415
Query: 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280
+GS TI + + D + +E EG P + + ++E A ++ CK K
Sbjct: 416 AKTGSGKTIAFLLPMFRHIMDQRSLEEGEG-----PIAVIMTPTRELALQITKECKKFSK 470
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLV---SLKAIDVSGVSLLVVD 337
G+ V ++ G I QI L+ E +V TP R++ ++ S + ++ V+ +V+D
Sbjct: 471 TLGLRVVCVYGGTGISEQIAELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLD 529
Query: 338 RLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA 394
D + G ++R + +P TV+F+ + P L I + V
Sbjct: 530 EADRMFDMGFEPQVMRIVDNVRPDRQTVMFS-----ATFPRAMEALARRILSKPIEVQVG 584
Query: 395 SQSACIIQSVNVCASDEEKIL----KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLV 450
+S VC+ E++++ + + H+ E V+ V K L+
Sbjct: 585 GRSV-------VCSDVEQQVIVIEEEKKFLKLLELLGHYQ-ESGSVIIFVDKQEHADGLL 636
Query: 451 STLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFI 510
L Y + I + ++S+ D K ++ ++ L+ +++V ++
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIIND-FKNGTCKLLVATSVAARGLDVKHLILVVNYS 695
Query: 511 IS--MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV R G ++F T+D A +AG +I+ LE G VP L L
Sbjct: 696 CPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKL 752
>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus
GN=Ddx46 PE=1 SV=1
Length = 1032
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/417 (21%), Positives = 172/417 (41%), Gaps = 45/417 (10%)
Query: 166 GQACEKLDCPSKFLILCLNAIE--NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL-- 221
G+ C K P K + C +++ N+++ G E+ P+ + S +D++
Sbjct: 364 GKGCPK---PIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAI-----PAIMSGRDLIGI 415
Query: 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280
+GS TI + + D + +E EG P + + ++E A ++ CK K
Sbjct: 416 AKTGSGKTIAFLLPMFRHIMDQRSLEEGEG-----PIAVIMTPTRELALQITKECKKFSK 470
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLV---SLKAIDVSGVSLLVVD 337
G+ V ++ G I QI L+ E +V TP R++ ++ S + ++ V+ +V+D
Sbjct: 471 TLGLRVVCVYGGTGISEQIAELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLD 529
Query: 338 RLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA 394
D + G ++R + +P TV+F+ + P L I + V
Sbjct: 530 EADRMFDMGFEPQVMRIVDNVRPDRQTVMFS-----ATFPRAMEALARRILSKPIEVQVG 584
Query: 395 SQSACIIQSVNVCASDEEKIL----KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLV 450
+S VC+ E++++ + + H+ E V+ V K L+
Sbjct: 585 GRSV-------VCSDVEQQVIVIEEEKKFLKLLELLGHYQ-ESGSVIIFVDKQEHADGLL 636
Query: 451 STLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFI 510
L Y + I + ++S+ D K ++ ++ L+ +++V ++
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIIND-FKNGTCKLLVATSVAARGLDVKHLILVVNYS 695
Query: 511 IS--MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDL 565
++YV R G ++F T+D A +AG +I+ LE G VP L L
Sbjct: 696 CPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKL 752
>sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP3 PE=1 SV=2
Length = 523
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/371 (21%), Positives = 157/371 (42%), Gaps = 53/371 (14%)
Query: 228 STIVQIAWIVATAADSIARKEKEG----FSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF- 282
+ I +AW + + + G F+F P + L++ Q+K V P +
Sbjct: 136 TPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELA 195
Query: 283 --------------GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDV 328
G+ ++ G D Q L+ + +V+TP RLL L+ ++D+
Sbjct: 196 SQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKSQ--VVVATPGRLLDLLQEGSVDL 253
Query: 329 SGVSLLVVDRLDS-LSKG---DTLSLIRQSISGKPHTVVFNDCL---------TYTSVPA 375
S V+ LV+D D L KG D ++IR++ + K T++F T+ + P
Sbjct: 254 SQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPI 313
Query: 376 VQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLK 435
+ +G+ ++L+ N+ + I++ V+ E K+L+ ++ +HS P K
Sbjct: 314 --KVSIGNTDQLTANKRITQ----IVEVVD-PRGKERKLLELLK--------KYHSGPKK 358
Query: 436 ---VLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDH 492
VL + + LK GY+++ + + + + + ++ D
Sbjct: 359 NEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDV 418
Query: 493 ISTA-ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEIL 551
+ ++ + VI F +++++YV + R +G H+ FT+ + AG ++ +L
Sbjct: 419 AARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVL 478
Query: 552 EQCGQVVPDAL 562
Q VP+ L
Sbjct: 479 NGANQPVPEDL 489
>sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=DBP3 PE=3 SV=1
Length = 592
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 130/291 (44%), Gaps = 21/291 (7%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
G+ V ++ G D Q+ R +V+TP RL L+ + D+S +V+D D +
Sbjct: 278 GLSVVCVYGGVPKDPQVAACRKAH--IVVATPGRLNDLIGDGSADLSNADYVVLDEADRM 335
Query: 343 SKGDTLSLIRQSISGKP---HTVVFNDCLTYTSVPAVQNL---LLGSINRLSL--NQSVA 394
IRQ IS P T++F T T P+V++L + S R+++ NQS
Sbjct: 336 LDKGFEEPIRQIISQTPKKRQTLMF----TATWPPSVRDLASTFMVSPVRITIGDNQSGE 391
Query: 395 SQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDS-KFQNLVSTL 453
++ I+ + K + +Q+L + + V + K++ + +N +
Sbjct: 392 LRANVRIKQLVEVLDPHAKEQRLLQLLKQYQSGKNKDDRILVFCLYKKEAMRIENFI--- 448
Query: 454 KCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELE--EYEVVIVPDFII 511
+ KG+ + G + +S K S K V ++ ++ L+ ++VI F +
Sbjct: 449 RMKGFRVG-GIHGDLSQEKRSASLAAFKEGQVPLLVATDVAARGLDIPAVKLVINVTFPL 507
Query: 512 SMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDAL 562
+ ++YV + R G+ +FFT+ D +G +I +L+ Q VP+ L
Sbjct: 508 TAEDYVHRIGRTGRAGKEGLAITFFTEHDKGLSGSLINVLKAANQEVPEEL 558
>sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helicase prp-5 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=prp-5 PE=3 SV=1
Length = 1194
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 149/324 (45%), Gaps = 27/324 (8%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G L + ++E ++ S +P KA + V+ + G AI QI L+ E +V+TP
Sbjct: 634 GAIALIMTPTRELCTQIYSDLQPFAKALKLRVVAAYGGNAIKDQIAELKRGA-EIIVATP 692
Query: 315 ERLLKLVSLKAIDVSGV---SLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
RL+ L++ V+ + + LV+D D + G +++ + +P T++F+
Sbjct: 693 GRLIDLLAANGGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRPDRQTILFS--- 749
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSAC---IIQSVNVCASDEEKILKGIQVLDHAY 425
++P + + L + R + +V +S I Q V V + +K + +++L Y
Sbjct: 750 --ATMPRIIDALTKKVLRDPVEITVGGRSVVAPEITQIVEVM-DEGKKFNRLLELLGELY 806
Query: 426 GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCIVSHIKNSVEADGRKR 482
D + ++ L V + K +L+ L +GY SI G + +NS +D +K
Sbjct: 807 AD---DDDVRSLIFVERQEKADDLLRELLRRGYGCMSIHGGKD---QEDRNSTISDFKKG 860
Query: 483 PAVSMIDKDHISTA-ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541
+I + ++++ ++VI D +++YV R +G +F T++
Sbjct: 861 VCPILIATSIAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQE 920
Query: 542 AHAGQMIEILEQCGQVVPDALRDL 565
A + + LEQ GQ VPD L ++
Sbjct: 921 NCASGIAKALEQSGQPVPDRLNEM 944
>sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP3 PE=3 SV=1
Length = 564
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 135/293 (46%), Gaps = 26/293 (8%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS- 341
G++ V+++ G + D QI +++ +V+TP RL+ L++ AI++ V+ LV+D D
Sbjct: 251 GVNCVAVYGGVSKDDQIRKIKTAN--VVVATPGRLVDLINDGAINLGKVNYLVLDEADRM 308
Query: 342 LSKG---DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL-------LGSINRLSLNQ 391
L KG D ++I + + + T++F N + +G + LS N+
Sbjct: 309 LEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNFMNSPVKVTVGDRDELSANK 368
Query: 392 SVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKD-SKFQNLV 450
+ +++ +N D+EK L IQ+L + + + + K+ S+ +N
Sbjct: 369 RITQ----VVEVINKF--DKEKKL--IQLLRKYNANESSDNKILIFALYKKEASRIENF- 419
Query: 451 STLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTA-ELEEYEVVIVPDF 509
LK +S++ + + + + + + ++ D + ++ +VVI F
Sbjct: 420 --LKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTF 477
Query: 510 IISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDAL 562
+++++YV + R G H+ FT+D+ +G + IL Q VP+ L
Sbjct: 478 PLTIEDYVHRIGRTGRAGAKGTAHTLFTEDEKHLSGALCNILRGANQPVPEEL 530
>sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana
GN=RH46 PE=2 SV=2
Length = 645
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 142/338 (42%), Gaps = 52/338 (15%)
Query: 253 SFTGPFLLFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLV 311
S GP +L L ++E A +++ K K+ I L+ GA Q+ + + +V
Sbjct: 230 SRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGV-DIVV 288
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RL ++ +K I + VS LV+D D + IR+ ++ P T+++
Sbjct: 289 ATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATW 348
Query: 369 TYTSVPAVQNLLL--GSINRLSLNQSVASQSACIIQSVNVCASDE-----EKILKGIQVL 421
+LL+ +N ++++ VA++S I Q++ V A E E+IL+
Sbjct: 349 PKEVRKIAADLLVNPAQVNIGNVDELVANKS--ITQTIEVLAPMEKHSRLEQILR----- 401
Query: 422 DHAYGDHFHSEPLKVLYIVGK-----DSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVE 476
EP + I D +NL T + K+ E
Sbjct: 402 --------SQEPGSKIIIFCSTKRMCDQLARNLTRTFGA----------AAIHGDKSQAE 443
Query: 477 AD--------GRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTV 528
D GR P + D ++++ VV+ DF +++YV + R
Sbjct: 444 RDDVLNQFRSGRT-PVLVATDV-AARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGA 501
Query: 529 SGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDLC 566
+G+ ++FF DA HA +I+ILE Q VP +R++
Sbjct: 502 TGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMA 539
>sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus musculus GN=Ddx42 PE=1 SV=3
Length = 929
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 130/333 (39%), Gaps = 48/333 (14%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E ++ + CK KA+ + +V+++ G ++ Q L+ E +V TP
Sbjct: 326 GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTP 384
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVP 374
RL+ V KA ++ VS LV D D + +R + P
Sbjct: 385 GRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR--------------SIASHVRP 430
Query: 375 AVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASD----EEKILKGIQVLDHAYGDHFH 430
Q LL + R + + +I + V D E + + +++L H
Sbjct: 431 DRQTLLFSATFRKKIEKLARD---ILIDPIRVVQGDIGEANEDVTQIVEIL--------H 479
Query: 431 SEPLK----------------VLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNS 474
S P K VL V K + + L S LK +G+++ + +N
Sbjct: 480 SGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNK 539
Query: 475 VEADGRKRPAVSMIDKDHISTA-ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILH 533
V +D +K+ ++ D + ++ + VI D + + + R G+ +
Sbjct: 540 VISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAY 599
Query: 534 SFFTKDDAAHAGQMIEILEQCGQVVPDALRDLC 566
+ T D+ AG ++ LE Q V L DL
Sbjct: 600 TLLTPKDSNFAGDLVRNLEGANQHVSKELLDLA 632
>sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dbp3
PE=3 SV=2
Length = 488
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 128/290 (44%), Gaps = 22/290 (7%)
Query: 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-L 342
I + G D Q L+S +V+TP RL L + ++D+ V LV+D D L
Sbjct: 175 IQVACIFGGVKKDEQREALKSAA--VVVATPGRLKDLQNDGSLDLGRVKYLVLDEADRML 232
Query: 343 SKG---DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNL---LLGSINRLSL--NQSVA 394
KG D +I K TV+F T T P V+NL + S +++ + S
Sbjct: 233 DKGFEQDIKDIISPMPVSKRQTVMF----TATWPPIVRNLASTFMTSPVTVTIGGDPSAD 288
Query: 395 SQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLK 454
++ I+ V EK + +Q+L+ H P KVL + + L+
Sbjct: 289 PRANSRIKQVVEVVKPHEKEQRLVQILNR----HQRGTPDKVLAFCLYKKEAMRVERLLR 344
Query: 455 CKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELE--EYEVVIVPDFIIS 512
KG+ ++ G + +S + + K A +++ ++ L+ ++V+ F ++
Sbjct: 345 TKGFKVA-GIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLT 403
Query: 513 MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDAL 562
+++YV + R G + FT+ D A +G +I +L+ Q VP+AL
Sbjct: 404 VEDYVHRIGRTGRAGADGHAITLFTETDKAQSGALINVLKAANQEVPEAL 453
>sp|Q755A5|DBP3_ASHGO ATP-dependent RNA helicase DBP3 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP3
PE=3 SV=1
Length = 535
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 133/292 (45%), Gaps = 24/292 (8%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS- 341
G++ ++ G D Q L+ + +V+TP RLL L+ + ++GV LV+D D
Sbjct: 222 GLNCCCVYGGVQKDSQREQLKKAQ--VVVATPGRLLDLIEEGSAKLAGVQYLVLDEADRM 279
Query: 342 LSKG---DTLSLIRQSISGKPHTVVFNDC-------LTYTSVPAVQNLLLGSINRLSLNQ 391
L KG D +I+++ S T++F L T + A + +G+ + LS N+
Sbjct: 280 LEKGFEEDIKRIIKETKSDVRQTLMFTATWPKEVRELASTFMRAPVKVSIGNRDELSANK 339
Query: 392 SVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVS 451
+ +Q +I +EK L +++L ++ + + + K++ +
Sbjct: 340 RI-TQVVEVIDPFK-----KEKRL--LELLKQYQSGAKKNDKVLIFALYKKEA--SRVER 389
Query: 452 TLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTA-ELEEYEVVIVPDFI 510
LK GY+++ + + ++ + A ++ D + ++ + VI F
Sbjct: 390 NLKYNGYNVAAIHGDLSQQQRTQALSEFKAGTANLLLATDVAARGLDIPNVKTVINLTFP 449
Query: 511 ISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDAL 562
+++++YV + R +G+ H+ FT+ + AG ++ +L GQ VP+ L
Sbjct: 450 LTVEDYVHRIGRTGRAGATGVAHTLFTEQEKHLAGALVNVLNGAGQPVPEEL 501
>sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=dbp3 PE=3 SV=2
Length = 596
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 144/318 (45%), Gaps = 18/318 (5%)
Query: 256 GPFLLFLVSSQEKAAK-VRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E A + + K KA G+ V ++ G D QI L++ + +V+TP
Sbjct: 252 GPRAVVVSPTRELAMQSYEQIVKLAKASGLECVCVYGGVPKDEQIRALKTAD--IVVATP 309
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS-----GKPHTVVFNDCLT 369
RL L++ D+S +V+D D + IR+ I+ GK T++F
Sbjct: 310 GRLNDLINQGCADLSKARYVVLDEADRMLDKGFEEEIRKIINTTPSLGKRQTLMFTATWP 369
Query: 370 YTSVPAVQNLLLGSINRLSLNQSVASQ---SACIIQSVNVCASDEEKILKGIQVLDHAYG 426
SV + + + S ++++ + ++ I+Q V V +K + +Q+L
Sbjct: 370 -ESVRELASTFMTSPVKIAIGDNPTGDLRANSRIVQKVEVVEP-RDKEYRLMQLLKQYQS 427
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVS 486
+ + V + K++ + ++ KG+ ++ G + +S + + + K
Sbjct: 428 GSQKDDRILVFCLYKKEA--TRVEGFIRQKGFRVA-GIHGDLSQEQRTRSLEAFKSGNTP 484
Query: 487 MIDKDHISTAELE--EYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHA 544
++ ++ L+ ++VI F +++++YV + R G+ + FT+ D A +
Sbjct: 485 VLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLFTEHDKAQS 544
Query: 545 GQMIEILEQCGQVVPDAL 562
G +I +L+ Q VPD L
Sbjct: 545 GALINVLKAANQPVPDEL 562
>sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotinia fuckeliana (strain
B05.10) GN=dbp3 PE=3 SV=1
Length = 592
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 144/318 (45%), Gaps = 18/318 (5%)
Query: 256 GPFLLFLVSSQEKAAK-VRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E A + + K KA G+ V ++ G D QI L++ + +V+TP
Sbjct: 248 GPRAVVVSPTRELAMQSYEQIVKLAKASGLECVCVYGGVPKDEQIRALKTAD--IVVATP 305
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS-----GKPHTVVFNDCLT 369
RL L++ D+S +V+D D + IR+ I+ GK T++F
Sbjct: 306 GRLNDLINQGCADLSKARYVVLDEADRMLDKGFEEEIRKIINTTPSLGKRQTLMFTATWP 365
Query: 370 YTSVPAVQNLLLGSINRLSLNQSVASQ---SACIIQSVNVCASDEEKILKGIQVLDHAYG 426
SV + + S ++++ + ++ I+Q V V +K + +Q+L
Sbjct: 366 -ESVRELAATFMTSPVKIAIGDNPTGDLRANSRIVQKVEVV-EPRDKEYRLMQLLKQYQS 423
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVS 486
+ + V + K++ + S ++ KG+ ++ G + +S + + + K
Sbjct: 424 GSQKDDRILVFCLYKKEA--TRVESFIRQKGFRVA-GIHGDLSQEQRTRSLEAFKSGNTP 480
Query: 487 MIDKDHISTAELE--EYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHA 544
++ ++ L+ ++VI F +++++YV + R G+ + FT+ D A +
Sbjct: 481 VLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLFTEHDKAQS 540
Query: 545 GQMIEILEQCGQVVPDAL 562
G +I +L+ Q VPD L
Sbjct: 541 GALINVLKAANQPVPDEL 558
>sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1
Length = 938
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 130/333 (39%), Gaps = 48/333 (14%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E ++ + CK KA+ + +V+++ G ++ Q L+ E +V TP
Sbjct: 326 GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTP 384
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVP 374
RL+ V KA ++ VS LV D D + +R + P
Sbjct: 385 GRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR--------------SIASHVRP 430
Query: 375 AVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASD----EEKILKGIQVLDHAYGDHFH 430
Q LL + R + + +I + V D E + + +++L H
Sbjct: 431 DRQTLLFSATFRKKIEKLARD---ILIDPIRVVQGDIGEANEDVTQIVEIL--------H 479
Query: 431 SEPLK----------------VLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNS 474
S P K VL V K + + L + LK +G+++ + +N
Sbjct: 480 SGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNK 539
Query: 475 VEADGRKRPAVSMIDKDHISTA-ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILH 533
V +D +K+ ++ D + ++ + VI D + + + R G+ +
Sbjct: 540 VISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAY 599
Query: 534 SFFTKDDAAHAGQMIEILEQCGQVVPDALRDLC 566
+ T D+ AG ++ LE Q V L DL
Sbjct: 600 TLLTPKDSNFAGDLVRNLEGANQHVSKELLDLA 632
>sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=dbp3 PE=3 SV=1
Length = 498
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 158/366 (43%), Gaps = 27/366 (7%)
Query: 211 WKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
W + +D++ +GS T+ + DS K+K P + + ++E
Sbjct: 111 WPLLFAGRDVIGIAETGSGKTLAFGLPCLKKIQDSAMTKQKP----YRPLAVIISPTREL 166
Query: 269 AAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
A ++ + K + G+ + G + Q L++ +V+TP RL L + ++D
Sbjct: 167 AMQIYDQLLKFSGSVGVRVACVFGGVRKEEQREALKTAG--VVVATPGRLKDLQNDGSVD 224
Query: 328 VSGVSLLVVDRLDS-LSKG---DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNL---L 380
+ V LV+D D L KG D +IR K T++F T T P+V++L
Sbjct: 225 LGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPVSKRQTIMF----TATWPPSVRDLASTF 280
Query: 381 LGSINRLSL--NQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLY 438
+ S +++ + S ++ I+ V EK + +Q+L+ + EP KVL
Sbjct: 281 MSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKESRLVQLLNRS--QRGVPEPEKVLA 338
Query: 439 IVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAEL 498
+ + L+ KG+ ++ G + +S + D K A +++ ++ L
Sbjct: 339 FCLYKKEAMRIERLLRTKGFKVA-GIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGL 397
Query: 499 EEYEV--VIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQ 556
+ V VI F +++++YV + R G + FT+ D A +G +I +L Q
Sbjct: 398 DIPSVKQVINVTFPLTVEDYVHRIGRTGRAGAEGHAVTLFTETDKAQSGALINVLRAAKQ 457
Query: 557 VVPDAL 562
+P+ L
Sbjct: 458 DIPEDL 463
>sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp.
japonica GN=Os06g0602400 PE=2 SV=2
Length = 602
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 145/342 (42%), Gaps = 15/342 (4%)
Query: 233 IAWIVATAADSIARKEKEGFSFTG--PFLLFLVSSQEKAAKVRSVCKPLK-AFGIHTVSL 289
++ +VA I +E+ F+ P L L ++E AA++ K G+ V
Sbjct: 143 VSGLVAAGGSGIGHRERSSFNRAAAKPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVA 202
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLS 349
+ G + +Q+ L + LV+TP RL+ +V + + + LV+D D +
Sbjct: 203 YGGTPMYNQLRDLERGA-DILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEP 261
Query: 350 LIRQSIS--GKPHTVVFNDCL-TYTSVPAVQNL---LLGSINRLSLNQSVASQSACIIQS 403
IR+ + P V L + T P +Q L L + +++ + V S + I+Q
Sbjct: 262 QIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGR-VGSSTDLIMQK 320
Query: 404 VNVCASDEEK--ILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461
V + + E++ +L +Q + +PL ++++ K + +L L KG+ +
Sbjct: 321 VELLSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETK-READSLRYWLYSKGFPAT 379
Query: 462 TGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTA-ELEEYEVVIVPDFIISMKNYVEIL 520
+ S + M+ D S ++ VI D S+++YV +
Sbjct: 380 AIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRI 439
Query: 521 TSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDAL 562
R +G +FFT+ D + A ++E++ + Q VPD L
Sbjct: 440 GRTGRAGKAGSATAFFTESDHSLAKGLLELMTEAKQDVPDWL 481
>sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp.
japonica GN=Os03g0308500 PE=2 SV=1
Length = 770
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 156/384 (40%), Gaps = 72/384 (18%)
Query: 216 SAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +DI+ +GS T + ++ D +++EG P + ++E A ++
Sbjct: 255 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEG-----PIGVVCAPTRELAHQIY 309
Query: 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPERLLKLVSLKAIDVSGV 331
K K + + +++ G + Q L++ CE +++TP RL+ L+ +KA+ +
Sbjct: 310 LEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCE--IVIATPGRLIDLLKMKALKMFRA 367
Query: 332 SLLVVDRLDSLSKGDTLSLIRQSISG--KP--HTVVFNDCLTYTSVPAVQNLLLGSINRL 387
+ LV+D D + IR SI G +P T++F+ + Y + +L I R+
Sbjct: 368 TYLVLDEADRMFDLGFEPQIR-SIVGQIRPDRQTLLFSATMPYKVERLAREILTDPI-RV 425
Query: 388 SLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQ 447
++ Q V S + I Q VNV SD EK+ ++ L D VL K ++
Sbjct: 426 TVGQ-VGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMIDDG------DVLVFAAKKARVD 478
Query: 448 NLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEE------Y 501
+ S L +G+ I+ DKD S E + Y
Sbjct: 479 EIESQLNQRGFRIAALHG-----------------------DKDQASRMETLQKFKSGVY 515
Query: 502 EVVIVPDF------IISMKNYV--EILTSMARHT-----------VSGILHSFFTKDDAA 542
V++ D I S+K V +I M H G ++ T+ +
Sbjct: 516 HVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVR 575
Query: 543 HAGQMIEILEQCGQVVPDALRDLC 566
AG+++ L GQ VP+ L DL
Sbjct: 576 FAGELVHCLIAAGQDVPNELMDLA 599
>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17
PE=2 SV=1
Length = 650
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 136/319 (42%), Gaps = 20/319 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L L ++E A +V+ V K + + ++ GA QI L E ++TP
Sbjct: 165 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV-EICIATP 223
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KPHTVVFNDCLTYT-S 372
RL+ + ++ + LV+D D + IR+ + +P T+
Sbjct: 224 GRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 283
Query: 373 VPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSE 432
V + L ++++ S + I+Q V+VC + EK K IQ+++ + +
Sbjct: 284 VRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCM-ESEKDHKLIQLMEEIMAEKEN-- 340
Query: 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADG-----RKRPAVSM 487
K + V + +L ++ G+ + CI K+ E D R A +
Sbjct: 341 --KTIIFVETKRRCDDLTRRMRRDGWP----AMCIHGD-KSQPERDWVLNEFRSGKAPIL 393
Query: 488 IDKDHISTA-ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQ 546
I D S ++E+ + VI D+ S ++YV + AR T G ++FFT + A +
Sbjct: 394 IATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 453
Query: 547 MIEILEQCGQVVPDALRDL 565
+I++LE+ Q + L L
Sbjct: 454 LIKVLEEANQAINPKLMQL 472
>sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 OS=Homo sapiens GN=DDX53
PE=1 SV=3
Length = 631
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 140/321 (43%), Gaps = 33/321 (10%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
GP +L L ++E A V + C G+ ++ ++ G + QI + S + +++TP
Sbjct: 296 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI-SKGVDIIIATPG 354
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI------------SGKPHTVV 363
RL L ++++ ++ LV+D D + + IR+ + S V
Sbjct: 355 RLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTV 414
Query: 364 FNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDH 423
L+Y P + + +G++N +++N + Q++ V E++ L V +
Sbjct: 415 RQLALSYLKDPMI--VYVGNLNLVAVN--------TVKQNIIVTTEKEKRALTQEFVENM 464
Query: 424 AYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI-STGSNCIVSHIKNSVEADGRKR 482
+ D KV+ V + +L S +G S S N S + +VE D +
Sbjct: 465 SPND-------KVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVE-DFKSG 516
Query: 483 PAVSMIDKDHISTA-ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541
+I D +S +L + V DF ++ YV + + R +G + T+ D+
Sbjct: 517 NIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDS 576
Query: 542 AHAGQMIEILEQCGQVVPDAL 562
AG++I+IL++ Q VP+ L
Sbjct: 577 KMAGELIKILDRANQSVPEDL 597
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,218,467
Number of Sequences: 539616
Number of extensions: 8096665
Number of successful extensions: 25860
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 280
Number of HSP's that attempted gapping in prelim test: 25309
Number of HSP's gapped (non-prelim): 661
length of query: 573
length of database: 191,569,459
effective HSP length: 123
effective length of query: 450
effective length of database: 125,196,691
effective search space: 56338510950
effective search space used: 56338510950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)