Query 008235
Match_columns 573
No_of_seqs 449 out of 2711
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 21:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0339 ATP-dependent RNA heli 100.0 1.7E-81 3.8E-86 629.6 35.1 497 1-572 84-608 (731)
2 KOG0331 ATP-dependent RNA heli 100.0 4.7E-80 1E-84 642.2 35.9 369 182-569 98-478 (519)
3 KOG0336 ATP-dependent RNA heli 100.0 3E-75 6.4E-80 571.4 27.4 423 119-568 161-601 (629)
4 KOG0330 ATP-dependent RNA heli 100.0 1.3E-74 2.8E-79 565.4 30.3 360 168-563 62-433 (476)
5 KOG0338 ATP-dependent RNA heli 100.0 6.9E-71 1.5E-75 554.1 26.9 349 179-551 185-545 (691)
6 PTZ00110 helicase; Provisional 100.0 2.3E-68 4.9E-73 582.2 44.8 416 125-570 84-515 (545)
7 KOG0333 U5 snRNP-like RNA heli 100.0 2.2E-69 4.7E-74 545.4 32.9 388 148-566 228-652 (673)
8 COG0513 SrmB Superfamily II DN 100.0 4E-68 8.7E-73 575.0 37.6 357 183-563 37-408 (513)
9 KOG0342 ATP-dependent RNA heli 100.0 8.4E-69 1.8E-73 539.4 27.9 345 183-549 90-447 (543)
10 KOG0341 DEAD-box protein abstr 100.0 4.8E-70 1E-74 531.4 17.1 388 148-567 153-557 (610)
11 KOG0335 ATP-dependent RNA heli 100.0 3E-68 6.6E-73 544.7 30.6 397 151-570 60-475 (482)
12 KOG0347 RNA helicase [RNA proc 100.0 4E-70 8.7E-75 553.0 14.2 353 181-555 187-586 (731)
13 PLN00206 DEAD-box ATP-dependen 100.0 4.6E-65 1E-69 554.5 43.0 415 122-566 72-502 (518)
14 KOG0328 Predicted ATP-dependen 100.0 1E-66 2.2E-71 489.8 24.4 363 167-564 27-398 (400)
15 KOG0343 RNA Helicase [RNA proc 100.0 1.7E-66 3.8E-71 526.5 27.7 340 184-547 78-431 (758)
16 KOG0345 ATP-dependent RNA heli 100.0 1.6E-65 3.5E-70 512.1 31.4 342 183-545 14-370 (567)
17 KOG0340 ATP-dependent RNA heli 100.0 1E-65 2.2E-70 497.5 26.3 360 168-559 8-381 (442)
18 KOG0348 ATP-dependent RNA heli 100.0 3.8E-64 8.3E-69 508.1 30.8 360 166-549 135-564 (708)
19 KOG0334 RNA helicase [RNA proc 100.0 4.5E-64 9.7E-69 546.3 31.0 412 125-567 319-748 (997)
20 KOG0326 ATP-dependent RNA heli 100.0 3.9E-64 8.4E-69 479.6 19.1 351 183-562 93-452 (459)
21 PRK04837 ATP-dependent RNA hel 100.0 4.2E-61 9.1E-66 513.5 38.8 360 167-555 8-378 (423)
22 PRK11776 ATP-dependent RNA hel 100.0 2.4E-59 5.2E-64 505.2 38.8 349 168-553 5-363 (460)
23 PRK10590 ATP-dependent RNA hel 100.0 3.2E-59 7E-64 502.5 39.5 357 169-555 3-368 (456)
24 PRK11634 ATP-dependent RNA hel 100.0 2.9E-59 6.3E-64 515.0 39.8 350 169-554 8-367 (629)
25 PRK04537 ATP-dependent RNA hel 100.0 8.1E-59 1.8E-63 508.7 41.0 359 168-555 10-380 (572)
26 KOG0346 RNA helicase [RNA proc 100.0 4.6E-60 9.9E-65 468.9 27.6 361 167-554 19-425 (569)
27 PRK11192 ATP-dependent RNA hel 100.0 2.6E-58 5.7E-63 494.0 40.6 355 169-554 3-367 (434)
28 PRK01297 ATP-dependent RNA hel 100.0 2.3E-57 5E-62 491.2 41.7 362 183-564 95-469 (475)
29 KOG0344 ATP-dependent RNA heli 100.0 2.5E-57 5.3E-62 466.8 26.9 394 148-569 115-525 (593)
30 KOG0327 Translation initiation 100.0 6.8E-56 1.5E-60 435.6 21.8 362 167-565 26-396 (397)
31 KOG0332 ATP-dependent RNA heli 100.0 3.1E-55 6.8E-60 426.9 25.8 363 166-566 89-472 (477)
32 PTZ00424 helicase 45; Provisio 100.0 5E-54 1.1E-58 456.9 37.2 361 168-563 29-398 (401)
33 KOG0350 DEAD-box ATP-dependent 100.0 4.8E-55 1E-59 439.5 26.5 348 182-553 144-554 (620)
34 KOG4284 DEAD box protein [Tran 100.0 1.4E-55 3E-60 453.4 22.0 342 182-547 32-388 (980)
35 KOG0337 ATP-dependent RNA heli 100.0 2.4E-55 5.1E-60 433.6 16.6 351 169-553 23-382 (529)
36 TIGR03817 DECH_helic helicase/ 100.0 4.6E-51 1E-55 458.3 36.0 344 173-554 16-403 (742)
37 KOG0329 ATP-dependent RNA heli 100.0 5.4E-50 1.2E-54 371.9 12.3 323 183-562 50-379 (387)
38 PLN03137 ATP-dependent DNA hel 100.0 1.2E-46 2.5E-51 420.3 36.1 320 193-549 456-797 (1195)
39 TIGR00614 recQ_fam ATP-depende 100.0 3.6E-46 7.7E-51 402.6 35.2 317 193-549 7-343 (470)
40 PRK11057 ATP-dependent DNA hel 100.0 5E-44 1.1E-48 395.8 36.0 314 193-548 21-352 (607)
41 PRK13767 ATP-dependent helicas 100.0 4.9E-43 1.1E-47 400.9 38.7 345 183-550 19-410 (876)
42 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.2E-43 9.2E-48 387.0 32.1 309 193-538 12-390 (844)
43 TIGR01389 recQ ATP-dependent D 100.0 1.2E-42 2.6E-47 385.6 35.1 315 193-549 9-341 (591)
44 PRK02362 ski2-like helicase; P 100.0 5.7E-42 1.2E-46 388.5 33.7 328 169-540 3-398 (737)
45 PRK09401 reverse gyrase; Revie 100.0 8.4E-42 1.8E-46 395.5 35.1 304 184-525 67-430 (1176)
46 TIGR00580 mfd transcription-re 100.0 1E-40 2.2E-45 378.2 37.1 303 201-539 450-770 (926)
47 PRK00254 ski2-like helicase; P 100.0 1.8E-40 3.9E-45 375.3 34.2 325 184-540 10-389 (720)
48 PRK10689 transcription-repair 100.0 5.3E-40 1.1E-44 379.8 34.4 303 200-538 598-918 (1147)
49 PRK14701 reverse gyrase; Provi 100.0 3.3E-40 7.2E-45 389.5 32.8 331 183-549 65-466 (1638)
50 PHA02653 RNA helicase NPH-II; 100.0 7.2E-40 1.6E-44 359.7 32.0 311 205-543 167-518 (675)
51 COG1201 Lhr Lhr-like helicases 100.0 1.4E-39 3.1E-44 357.2 32.7 343 183-551 9-375 (814)
52 PRK10917 ATP-dependent DNA hel 100.0 5.6E-39 1.2E-43 359.3 37.5 304 199-537 258-587 (681)
53 TIGR00643 recG ATP-dependent D 100.0 3.6E-38 7.7E-43 350.6 37.7 303 200-536 233-563 (630)
54 PRK12898 secA preprotein trans 100.0 2.6E-38 5.6E-43 342.2 34.2 308 204-541 105-588 (656)
55 PRK09751 putative ATP-dependen 100.0 1.5E-38 3.2E-43 369.4 33.2 301 222-539 1-383 (1490)
56 PRK01172 ski2-like helicase; P 100.0 2.2E-38 4.7E-43 356.8 33.1 324 169-539 3-378 (674)
57 TIGR01054 rgy reverse gyrase. 100.0 2.7E-38 5.8E-43 367.0 33.9 292 183-512 64-410 (1171)
58 KOG0349 Putative DEAD-box RNA 100.0 3.7E-39 8E-44 319.0 15.4 271 258-538 288-614 (725)
59 COG0514 RecQ Superfamily II DN 100.0 2.1E-37 4.6E-42 328.9 27.0 318 193-550 13-348 (590)
60 TIGR01970 DEAH_box_HrpB ATP-de 100.0 8.7E-37 1.9E-41 342.9 31.3 300 208-543 8-340 (819)
61 PRK11664 ATP-dependent RNA hel 100.0 1E-36 2.2E-41 343.2 27.8 296 209-541 12-341 (812)
62 PRK09200 preprotein translocas 100.0 1.9E-35 4.1E-40 326.4 34.4 308 204-541 80-543 (790)
63 TIGR00963 secA preprotein tran 100.0 1.8E-34 3.8E-39 313.9 34.0 308 204-541 58-519 (745)
64 PHA02558 uvsW UvsW helicase; P 100.0 5.5E-35 1.2E-39 317.3 28.5 299 203-531 115-444 (501)
65 TIGR01587 cas3_core CRISPR-ass 100.0 7.7E-35 1.7E-39 304.9 27.7 293 219-538 1-335 (358)
66 TIGR03714 secA2 accessory Sec 100.0 7.6E-34 1.6E-38 310.9 36.3 309 204-542 72-540 (762)
67 COG1111 MPH1 ERCC4-like helica 100.0 1.6E-33 3.5E-38 286.8 30.4 322 198-539 11-481 (542)
68 PRK13766 Hef nuclease; Provisi 100.0 7.9E-33 1.7E-37 317.1 36.8 325 194-539 7-479 (773)
69 TIGR03158 cas3_cyano CRISPR-as 100.0 1.6E-32 3.4E-37 285.6 30.6 292 206-524 1-357 (357)
70 COG1205 Distinct helicase fami 100.0 2.5E-32 5.4E-37 308.1 32.5 341 183-552 56-437 (851)
71 COG1202 Superfamily II helicas 100.0 3.2E-32 6.9E-37 278.6 24.1 336 169-539 196-553 (830)
72 COG1204 Superfamily II helicas 100.0 1E-31 2.2E-36 299.3 27.5 311 204-538 33-407 (766)
73 KOG0351 ATP-dependent DNA heli 100.0 9.9E-32 2.2E-36 301.1 25.7 314 204-549 266-602 (941)
74 KOG0352 ATP-dependent DNA heli 100.0 8.9E-32 1.9E-36 266.6 21.2 320 203-549 21-372 (641)
75 KOG0354 DEAD-box like helicase 100.0 1.4E-30 3E-35 280.0 28.4 328 194-541 54-531 (746)
76 PRK11131 ATP-dependent RNA hel 100.0 1.6E-30 3.4E-35 297.8 29.7 297 206-542 78-414 (1294)
77 PRK05580 primosome assembly pr 100.0 6.5E-29 1.4E-33 277.3 34.1 305 200-538 142-548 (679)
78 KOG0952 DNA/RNA helicase MER3/ 100.0 8.3E-29 1.8E-33 268.7 28.0 326 204-547 112-499 (1230)
79 cd00268 DEADc DEAD-box helicas 100.0 5.2E-29 1.1E-33 239.6 21.8 187 186-384 10-200 (203)
80 PRK12899 secA preprotein trans 100.0 1E-27 2.2E-32 263.9 32.5 137 192-344 84-229 (970)
81 TIGR00603 rad25 DNA repair hel 100.0 1E-27 2.2E-32 262.9 29.0 317 201-555 254-625 (732)
82 KOG0353 ATP-dependent DNA heli 100.0 1.4E-27 3E-32 233.6 26.5 315 204-549 96-477 (695)
83 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.3E-27 2.8E-32 275.0 29.0 298 210-542 75-407 (1283)
84 PRK13104 secA preprotein trans 100.0 2.8E-26 6E-31 253.3 32.2 307 204-540 84-588 (896)
85 PRK09694 helicase Cas3; Provis 100.0 1.4E-25 3.1E-30 252.5 35.3 344 202-567 286-725 (878)
86 PRK12904 preprotein translocas 100.0 7.7E-26 1.7E-30 249.6 31.8 306 204-540 83-574 (830)
87 TIGR00595 priA primosomal prot 99.9 1.5E-25 3.3E-30 241.9 29.7 287 221-540 1-383 (505)
88 PF00270 DEAD: DEAD/DEAH box h 99.9 4.1E-26 8.8E-31 212.5 18.4 161 204-374 1-168 (169)
89 PRK12906 secA preprotein trans 99.9 2E-24 4.4E-29 237.5 30.6 320 186-541 69-555 (796)
90 COG1061 SSL2 DNA or RNA helica 99.9 2.1E-24 4.5E-29 230.3 27.3 290 200-525 34-375 (442)
91 KOG0951 RNA helicase BRR2, DEA 99.9 1.9E-24 4.1E-29 237.6 26.7 358 176-566 294-723 (1674)
92 COG1200 RecG RecG-like helicas 99.9 9.6E-24 2.1E-28 224.3 30.5 320 199-554 259-606 (677)
93 PRK11448 hsdR type I restricti 99.9 1.2E-23 2.7E-28 243.3 31.0 302 202-527 413-801 (1123)
94 PRK13107 preprotein translocas 99.9 3.8E-23 8.3E-28 227.8 29.4 309 204-541 84-593 (908)
95 PRK04914 ATP-dependent helicas 99.9 4.1E-23 8.9E-28 234.1 29.6 329 201-553 151-617 (956)
96 KOG0948 Nuclear exosomal RNA h 99.9 2.8E-24 6E-29 226.1 18.4 309 200-539 127-539 (1041)
97 KOG0947 Cytoplasmic exosomal R 99.9 2.8E-22 6E-27 216.0 26.5 304 201-539 296-723 (1248)
98 COG4098 comFA Superfamily II D 99.9 3.1E-21 6.7E-26 187.8 28.1 303 202-543 97-420 (441)
99 COG1197 Mfd Transcription-repa 99.9 2.7E-21 5.9E-26 216.3 31.3 304 199-539 591-913 (1139)
100 COG4581 Superfamily II RNA hel 99.9 2.1E-21 4.4E-26 217.2 26.7 307 201-538 118-536 (1041)
101 COG1110 Reverse gyrase [DNA re 99.9 4.3E-20 9.3E-25 201.6 29.1 290 183-511 68-417 (1187)
102 KOG0950 DNA polymerase theta/e 99.9 5.1E-20 1.1E-24 200.2 22.0 329 191-549 217-621 (1008)
103 PRK12900 secA preprotein trans 99.8 2.7E-19 5.8E-24 198.3 25.6 140 410-558 580-734 (1025)
104 TIGR01407 dinG_rel DnaQ family 99.8 2.5E-18 5.4E-23 198.0 33.0 341 186-551 235-828 (850)
105 TIGR00631 uvrb excinuclease AB 99.8 7E-19 1.5E-23 194.7 27.0 131 410-550 424-564 (655)
106 PRK05298 excinuclease ABC subu 99.8 1.6E-17 3.6E-22 185.1 31.1 145 410-564 428-591 (652)
107 smart00487 DEXDc DEAD-like hel 99.8 3E-18 6.5E-23 162.6 20.6 177 204-390 10-191 (201)
108 PRK12326 preprotein translocas 99.8 8.3E-17 1.8E-21 174.1 32.8 310 204-540 80-548 (764)
109 COG1203 CRISPR-associated heli 99.8 5.6E-18 1.2E-22 191.4 24.3 316 203-539 196-550 (733)
110 COG4096 HsdR Type I site-speci 99.8 7.6E-18 1.6E-22 181.7 19.2 302 201-526 164-525 (875)
111 TIGR00348 hsdR type I site-spe 99.8 8.2E-17 1.8E-21 180.2 27.1 318 202-538 238-650 (667)
112 KOG4150 Predicted ATP-dependen 99.8 1.9E-17 4.1E-22 170.1 19.2 350 180-557 269-660 (1034)
113 PLN03142 Probable chromatin-re 99.8 2.9E-16 6.3E-21 179.3 29.9 314 203-539 170-599 (1033)
114 COG1643 HrpA HrpA-like helicas 99.8 7.8E-17 1.7E-21 179.6 24.7 302 206-541 54-389 (845)
115 COG0556 UvrB Helicase subunit 99.7 1.8E-16 3.9E-21 162.9 22.0 126 433-564 446-591 (663)
116 COG1198 PriA Primosomal protei 99.7 5.3E-16 1.1E-20 170.6 25.1 305 201-537 197-601 (730)
117 PRK13103 secA preprotein trans 99.7 5.6E-15 1.2E-19 163.8 32.5 322 204-555 84-611 (913)
118 PRK07246 bifunctional ATP-depe 99.7 2.2E-15 4.8E-20 171.6 30.3 307 204-539 247-783 (820)
119 PRK12903 secA preprotein trans 99.7 1.7E-14 3.8E-19 158.3 32.5 323 204-555 80-560 (925)
120 TIGR03117 cas_csf4 CRISPR-asso 99.7 1.1E-13 2.4E-18 151.4 33.2 73 211-292 10-86 (636)
121 CHL00122 secA preprotein trans 99.6 9E-14 1.9E-18 153.7 29.6 124 204-343 78-209 (870)
122 KOG0922 DEAH-box RNA helicase 99.6 4.1E-14 8.9E-19 149.9 22.9 298 210-541 59-392 (674)
123 cd00046 DEXDc DEAD-like helica 99.6 9.5E-15 2.1E-19 130.3 15.7 141 218-368 1-144 (144)
124 PRK08074 bifunctional ATP-depe 99.6 7.4E-13 1.6E-17 153.6 32.0 130 414-551 737-907 (928)
125 PF06862 DUF1253: Protein of u 99.6 3.9E-13 8.5E-18 140.2 26.5 287 254-549 35-425 (442)
126 PRK12902 secA preprotein trans 99.6 3E-12 6.6E-17 141.4 32.4 124 204-343 87-218 (939)
127 KOG0920 ATP-dependent RNA heli 99.6 2.9E-13 6.2E-18 150.8 22.9 309 203-540 174-545 (924)
128 PF04851 ResIII: Type III rest 99.5 8.9E-14 1.9E-18 130.8 13.5 150 203-369 4-183 (184)
129 KOG0924 mRNA splicing factor A 99.5 4.7E-13 1E-17 140.8 18.0 297 209-539 363-697 (1042)
130 KOG0949 Predicted helicase, DE 99.5 3.3E-12 7E-17 139.3 22.6 157 201-371 510-674 (1330)
131 cd00079 HELICc Helicase superf 99.5 4.4E-13 9.5E-18 118.7 12.7 125 400-535 2-131 (131)
132 KOG0951 RNA helicase BRR2, DEA 99.5 1.9E-12 4.2E-17 144.1 19.7 305 204-547 1145-1502(1674)
133 KOG0923 mRNA splicing factor A 99.5 1.7E-12 3.7E-17 136.5 17.7 303 203-539 266-606 (902)
134 KOG0385 Chromatin remodeling c 99.5 1E-11 2.2E-16 132.8 22.9 318 202-539 167-599 (971)
135 KOG2340 Uncharacterized conser 99.4 1.1E-11 2.4E-16 127.6 19.2 344 200-549 214-678 (698)
136 KOG0926 DEAH-box RNA helicase 99.4 4E-12 8.6E-17 136.1 15.2 220 212-456 266-504 (1172)
137 PRK11747 dinG ATP-dependent DN 99.4 5.8E-10 1.3E-14 125.8 32.8 92 412-510 518-615 (697)
138 COG1199 DinG Rad3-related DNA 99.4 2.4E-10 5.3E-15 129.2 28.4 65 204-278 17-85 (654)
139 KOG1123 RNA polymerase II tran 99.3 3.3E-11 7.1E-16 123.3 15.4 315 201-553 301-669 (776)
140 PF00271 Helicase_C: Helicase 99.3 5.2E-12 1.1E-16 101.6 7.8 73 451-527 1-78 (78)
141 COG4889 Predicted helicase [Ge 99.3 1.1E-11 2.3E-16 133.7 11.6 333 203-555 162-617 (1518)
142 KOG0925 mRNA splicing factor A 99.3 5E-10 1.1E-14 114.5 22.7 300 206-539 51-387 (699)
143 TIGR00604 rad3 DNA repair heli 99.3 6E-09 1.3E-13 118.4 31.8 68 204-279 12-83 (705)
144 PRK12901 secA preprotein trans 99.2 8.4E-10 1.8E-14 123.6 23.0 124 410-540 610-742 (1112)
145 PRK14873 primosome assembly pr 99.2 2.4E-09 5.3E-14 119.0 24.3 128 225-372 168-307 (665)
146 smart00489 DEXDc3 DEAD-like he 99.2 5E-10 1.1E-14 113.2 14.8 75 200-279 6-84 (289)
147 smart00488 DEXDc2 DEAD-like he 99.2 5E-10 1.1E-14 113.2 14.8 75 200-279 6-84 (289)
148 KOG0387 Transcription-coupled 99.1 5.1E-08 1.1E-12 105.5 28.5 326 203-550 206-672 (923)
149 KOG1000 Chromatin remodeling p 99.1 2.8E-08 6.1E-13 102.1 24.3 323 204-551 200-617 (689)
150 KOG0390 DNA repair protein, SN 99.0 3E-07 6.6E-12 101.7 30.5 157 203-368 239-414 (776)
151 PF02399 Herpes_ori_bp: Origin 99.0 1.6E-08 3.5E-13 111.4 19.8 287 216-538 47-387 (824)
152 TIGR02562 cas3_yersinia CRISPR 99.0 1.4E-08 3E-13 114.6 19.6 172 194-374 400-640 (1110)
153 KOG0384 Chromodomain-helicase 99.0 3.6E-08 7.8E-13 111.0 21.1 313 202-539 370-811 (1373)
154 PF07652 Flavi_DEAD: Flaviviru 99.0 2.5E-09 5.5E-14 94.2 9.6 133 217-372 4-140 (148)
155 smart00490 HELICc helicase sup 99.0 1.5E-09 3.2E-14 87.5 6.8 76 448-527 2-82 (82)
156 KOG0389 SNF2 family DNA-depend 98.9 5.4E-08 1.2E-12 105.2 18.9 118 413-539 762-888 (941)
157 PF07517 SecA_DEAD: SecA DEAD- 98.8 1.3E-07 2.8E-12 93.5 17.0 139 184-343 64-210 (266)
158 PF00176 SNF2_N: SNF2 family N 98.8 4.7E-08 1E-12 99.4 13.0 140 217-370 25-174 (299)
159 KOG0953 Mitochondrial RNA heli 98.8 1.4E-07 3E-12 98.5 16.3 271 218-549 191-486 (700)
160 COG0653 SecA Preprotein transl 98.7 7E-07 1.5E-11 99.2 20.1 124 204-343 82-213 (822)
161 COG0610 Type I site-specific r 98.6 1.4E-05 3E-10 93.2 26.9 140 218-370 274-415 (962)
162 KOG0392 SNF2 family DNA-depend 98.6 9.1E-06 2E-10 91.9 23.2 324 204-539 977-1454(1549)
163 KOG1002 Nucleotide excision re 98.5 1.8E-05 3.9E-10 81.8 22.2 121 412-539 620-749 (791)
164 KOG0386 Chromatin remodeling c 98.4 2.7E-06 5.9E-11 94.5 14.6 118 411-535 709-832 (1157)
165 KOG4439 RNA polymerase II tran 98.4 9.2E-06 2E-10 87.2 17.4 122 410-538 727-857 (901)
166 TIGR00596 rad1 DNA repair prot 98.4 1.6E-05 3.4E-10 90.4 18.3 63 307-369 8-73 (814)
167 KOG0952 DNA/RNA helicase MER3/ 98.3 3.5E-07 7.5E-12 101.9 4.0 162 204-379 929-1103(1230)
168 PRK15483 type III restriction- 98.2 1E-05 2.2E-10 92.2 12.2 142 218-370 60-240 (986)
169 PF14617 CMS1: U3-containing 9 98.0 1.1E-05 2.4E-10 78.9 7.5 86 255-340 125-211 (252)
170 PF13604 AAA_30: AAA domain; P 97.9 3.8E-05 8.2E-10 73.2 9.2 126 203-367 2-130 (196)
171 PF13086 AAA_11: AAA domain; P 97.9 0.00012 2.6E-09 71.2 12.8 73 203-278 2-75 (236)
172 PF12340 DUF3638: Protein of u 97.9 0.00013 2.8E-09 70.1 11.6 129 203-343 24-185 (229)
173 PF02562 PhoH: PhoH-like prote 97.7 5.7E-05 1.2E-09 71.8 6.3 139 203-367 5-155 (205)
174 PRK10875 recD exonuclease V su 97.6 0.00056 1.2E-08 76.0 12.8 140 204-366 154-300 (615)
175 PF09848 DUF2075: Uncharacteri 97.6 0.00031 6.8E-09 73.4 9.6 94 220-344 4-97 (352)
176 KOG0921 Dosage compensation co 97.5 0.00045 9.8E-09 76.4 10.6 137 214-369 390-536 (1282)
177 TIGR01448 recD_rel helicase, p 97.5 0.00079 1.7E-08 76.7 13.0 129 203-367 324-452 (720)
178 TIGR01447 recD exodeoxyribonuc 97.5 0.0011 2.3E-08 73.6 13.6 141 204-366 147-294 (586)
179 KOG0391 SNF2 family DNA-depend 97.4 0.0011 2.5E-08 75.1 12.3 115 412-539 1260-1387(1958)
180 PRK10536 hypothetical protein; 97.3 0.0028 6.1E-08 62.2 11.6 139 203-365 60-210 (262)
181 PRK13889 conjugal transfer rel 97.3 0.0031 6.6E-08 73.5 13.9 123 202-367 346-470 (988)
182 PF13872 AAA_34: P-loop contai 97.3 0.0019 4.2E-08 64.4 10.6 156 204-375 39-227 (303)
183 TIGR00376 DNA helicase, putati 97.2 0.0034 7.3E-08 70.6 13.2 65 203-278 158-223 (637)
184 PF13307 Helicase_C_2: Helicas 97.2 0.0014 2.9E-08 60.8 8.5 103 433-538 9-149 (167)
185 TIGR02768 TraA_Ti Ti-type conj 97.1 0.0053 1.2E-07 70.3 13.9 122 201-365 351-474 (744)
186 PF13245 AAA_19: Part of AAA d 97.1 0.002 4.3E-08 51.2 7.0 60 210-276 2-62 (76)
187 KOG1132 Helicase of the DEAD s 97.0 0.0043 9.4E-08 69.1 10.9 82 199-281 18-135 (945)
188 KOG1802 RNA helicase nonsense 96.9 0.0062 1.4E-07 65.8 10.9 76 202-290 410-485 (935)
189 COG3587 Restriction endonuclea 96.8 0.0039 8.4E-08 69.2 8.5 61 493-553 493-567 (985)
190 PRK14974 cell division protein 96.7 0.022 4.7E-07 58.8 13.0 130 218-381 141-277 (336)
191 KOG1803 DNA helicase [Replicat 96.7 0.0041 8.8E-08 66.8 7.7 63 203-276 186-249 (649)
192 KOG0391 SNF2 family DNA-depend 96.7 0.017 3.7E-07 66.0 12.4 151 204-368 617-775 (1958)
193 PRK12723 flagellar biosynthesi 96.6 0.11 2.4E-06 54.6 17.7 52 328-379 252-309 (388)
194 PRK13826 Dtr system oriT relax 96.6 0.024 5.2E-07 66.7 13.6 124 201-367 380-505 (1102)
195 PF00580 UvrD-helicase: UvrD/R 96.6 0.0049 1.1E-07 62.9 7.2 68 203-279 1-68 (315)
196 PHA02533 17 large terminase pr 96.5 0.016 3.4E-07 63.6 10.8 148 200-368 57-210 (534)
197 TIGR02760 TraI_TIGR conjugativ 96.5 0.28 6.1E-06 62.0 22.6 212 201-455 428-648 (1960)
198 PRK04296 thymidine kinase; Pro 96.5 0.0084 1.8E-07 56.8 7.4 109 219-368 4-115 (190)
199 PRK11889 flhF flagellar biosyn 96.4 0.29 6.3E-06 51.2 18.6 70 311-381 302-376 (436)
200 PF03354 Terminase_1: Phage Te 96.2 0.018 3.9E-07 62.8 9.1 146 205-366 1-161 (477)
201 TIGR01073 pcrA ATP-dependent D 96.2 0.45 9.7E-06 54.9 20.9 68 203-279 5-72 (726)
202 PF13401 AAA_22: AAA domain; P 96.2 0.017 3.8E-07 50.6 7.2 18 217-235 4-21 (131)
203 COG1875 NYN ribonuclease and A 96.1 0.022 4.7E-07 58.0 8.4 137 204-365 230-385 (436)
204 KOG1805 DNA replication helica 96.1 0.018 4E-07 64.9 8.3 122 204-344 671-810 (1100)
205 PF05970 PIF1: PIF1-like helic 96.0 0.026 5.6E-07 59.3 8.5 59 203-272 2-66 (364)
206 cd00009 AAA The AAA+ (ATPases 95.8 0.1 2.2E-06 45.8 10.9 28 328-355 82-111 (151)
207 PRK14722 flhF flagellar biosyn 95.8 0.09 2E-06 54.9 11.5 53 328-380 213-270 (374)
208 PRK06526 transposase; Provisio 95.7 0.03 6.5E-07 55.5 7.3 43 328-370 157-203 (254)
209 PRK08181 transposase; Validate 95.7 0.15 3.3E-06 51.0 12.1 101 215-367 104-208 (269)
210 KOG0388 SNF2 family DNA-depend 95.6 0.029 6.2E-07 61.2 6.9 152 204-369 569-734 (1185)
211 PRK06731 flhF flagellar biosyn 95.3 0.5 1.1E-05 47.3 14.2 128 216-381 74-210 (270)
212 PRK12726 flagellar biosynthesi 95.2 0.83 1.8E-05 47.7 16.0 19 217-236 206-224 (407)
213 PRK05642 DNA replication initi 95.1 0.067 1.5E-06 52.4 7.4 42 329-370 96-141 (234)
214 KOG1001 Helicase-like transcri 95.1 0.1 2.3E-06 58.6 9.7 113 220-344 155-268 (674)
215 COG0553 HepA Superfamily II DN 95.1 0.21 4.6E-06 58.6 12.9 121 412-539 692-822 (866)
216 PRK14712 conjugal transfer nic 95.0 0.21 4.6E-06 61.0 12.5 127 203-367 836-967 (1623)
217 PF00448 SRP54: SRP54-type pro 95.0 0.35 7.6E-06 46.0 11.7 52 329-380 82-137 (196)
218 COG3421 Uncharacterized protei 94.9 0.051 1.1E-06 58.4 6.4 75 306-381 81-177 (812)
219 PF05621 TniB: Bacterial TniB 94.9 0.11 2.3E-06 52.3 8.2 112 218-361 62-181 (302)
220 KOG1015 Transcription regulato 94.9 1.7 3.7E-05 49.6 18.0 141 218-368 697-859 (1567)
221 KOG0388 SNF2 family DNA-depend 94.8 0.083 1.8E-06 57.8 7.7 120 411-539 1027-1154(1185)
222 COG0553 HepA Superfamily II DN 94.8 0.14 3.1E-06 60.0 10.6 155 204-368 340-510 (866)
223 PRK13894 conjugal transfer ATP 94.8 0.19 4.2E-06 51.5 10.1 57 204-269 134-191 (319)
224 PRK05703 flhF flagellar biosyn 94.8 0.88 1.9E-05 48.7 15.3 64 312-379 285-354 (424)
225 PRK08084 DNA replication initi 94.8 0.094 2E-06 51.4 7.5 40 331-370 98-142 (235)
226 PF05127 Helicase_RecD: Helica 94.7 0.019 4.1E-07 53.4 2.4 124 221-370 1-125 (177)
227 PRK06893 DNA replication initi 94.7 0.09 2E-06 51.4 7.2 44 328-371 89-137 (229)
228 PRK07952 DNA replication prote 94.7 0.52 1.1E-05 46.4 12.5 102 218-369 100-206 (244)
229 PRK05707 DNA polymerase III su 94.7 0.17 3.7E-06 52.2 9.3 41 203-245 4-48 (328)
230 PRK08727 hypothetical protein; 94.6 0.092 2E-06 51.4 7.0 42 329-370 92-138 (233)
231 PRK14087 dnaA chromosomal repl 94.6 0.28 6.1E-06 52.9 11.2 45 328-372 204-253 (450)
232 PRK13833 conjugal transfer pro 94.5 0.25 5.4E-06 50.7 10.2 57 204-269 130-187 (323)
233 smart00382 AAA ATPases associa 94.5 0.13 2.7E-06 44.8 7.0 17 217-234 2-18 (148)
234 PRK13709 conjugal transfer nic 94.4 0.4 8.7E-06 59.4 13.1 129 203-367 968-1099(1747)
235 PRK08769 DNA polymerase III su 94.4 0.35 7.6E-06 49.6 10.8 135 203-367 5-152 (319)
236 PRK00771 signal recognition pa 94.3 0.83 1.8E-05 49.0 13.9 48 332-379 177-228 (437)
237 KOG0989 Replication factor C, 94.3 0.1 2.2E-06 52.0 6.5 44 327-370 126-171 (346)
238 PRK06835 DNA replication prote 94.3 0.17 3.8E-06 52.1 8.4 45 217-273 183-227 (329)
239 PF00308 Bac_DnaA: Bacterial d 94.3 0.39 8.5E-06 46.5 10.4 45 328-372 95-144 (219)
240 TIGR03420 DnaA_homol_Hda DnaA 94.2 0.22 4.8E-06 48.2 8.8 18 217-235 38-55 (226)
241 PRK11331 5-methylcytosine-spec 94.2 0.46 1E-05 50.6 11.6 30 205-235 182-211 (459)
242 PTZ00112 origin recognition co 94.2 0.61 1.3E-05 53.4 12.7 39 329-367 868-909 (1164)
243 PRK08903 DnaA regulatory inact 94.1 0.25 5.4E-06 48.0 8.8 41 330-370 90-133 (227)
244 PF01695 IstB_IS21: IstB-like 94.0 0.18 3.8E-06 47.2 7.2 46 216-273 46-91 (178)
245 PRK11054 helD DNA helicase IV; 94.0 0.32 6.9E-06 55.2 10.6 77 203-288 197-274 (684)
246 TIGR02782 TrbB_P P-type conjug 93.9 0.58 1.3E-05 47.7 11.2 57 204-269 118-175 (299)
247 PRK00149 dnaA chromosomal repl 93.8 0.56 1.2E-05 50.7 11.8 42 330-371 211-257 (450)
248 cd01120 RecA-like_NTPases RecA 93.8 0.28 6E-06 44.2 8.1 42 329-370 84-138 (165)
249 PRK06921 hypothetical protein; 93.8 0.35 7.7E-06 48.3 9.3 46 216-272 116-161 (266)
250 TIGR01547 phage_term_2 phage t 93.7 0.24 5.3E-06 52.6 8.6 144 220-380 4-152 (396)
251 PRK12422 chromosomal replicati 93.7 0.3 6.4E-06 52.6 9.2 47 329-375 201-252 (445)
252 KOG0991 Replication factor C, 93.5 0.099 2.1E-06 50.1 4.4 41 329-369 112-154 (333)
253 PRK04537 ATP-dependent RNA hel 93.4 0.46 1E-05 53.0 10.4 76 255-339 256-334 (572)
254 COG1444 Predicted P-loop ATPas 93.4 0.48 1E-05 53.4 10.3 140 204-370 213-358 (758)
255 TIGR00580 mfd transcription-re 93.4 1.2 2.6E-05 52.3 14.1 81 255-342 659-742 (926)
256 PRK08116 hypothetical protein; 93.3 0.96 2.1E-05 45.3 11.6 44 328-371 176-224 (268)
257 COG1419 FlhF Flagellar GTP-bin 93.2 1.7 3.7E-05 45.5 13.3 129 217-381 203-337 (407)
258 KOG0742 AAA+-type ATPase [Post 93.2 0.69 1.5E-05 48.0 10.2 139 218-429 385-536 (630)
259 TIGR02760 TraI_TIGR conjugativ 93.2 0.67 1.4E-05 58.8 12.3 124 202-365 1019-1147(1960)
260 PRK11773 uvrD DNA-dependent he 93.2 0.24 5.3E-06 56.9 8.0 67 204-279 11-77 (721)
261 PRK12402 replication factor C 93.1 0.73 1.6E-05 47.5 10.7 36 329-364 124-161 (337)
262 cd00561 CobA_CobO_BtuR ATP:cor 93.1 1.4 3E-05 40.3 11.2 50 328-377 93-147 (159)
263 PRK10919 ATP-dependent DNA hel 93.0 0.23 4.9E-06 56.6 7.4 68 203-279 3-70 (672)
264 TIGR01075 uvrD DNA helicase II 93.0 0.21 4.5E-06 57.4 7.0 68 203-279 5-72 (715)
265 COG0513 SrmB Superfamily II DN 92.9 0.61 1.3E-05 51.3 10.4 70 257-335 274-346 (513)
266 PRK00411 cdc6 cell division co 92.9 1.1 2.3E-05 47.5 12.0 24 218-243 56-79 (394)
267 PRK07764 DNA polymerase III su 92.8 0.86 1.9E-05 52.8 11.6 40 329-369 119-160 (824)
268 TIGR00631 uvrb excinuclease AB 92.8 1.5 3.4E-05 49.5 13.4 115 255-378 441-563 (655)
269 KOG1133 Helicase of the DEAD s 92.7 0.16 3.4E-06 55.7 5.2 123 433-566 629-797 (821)
270 TIGR03015 pepcterm_ATPase puta 92.7 1 2.2E-05 44.8 10.8 32 203-235 24-60 (269)
271 TIGR01074 rep ATP-dependent DN 92.7 0.29 6.3E-06 55.8 7.6 68 203-279 2-69 (664)
272 PRK10689 transcription-repair 92.6 0.42 9.1E-06 57.4 9.1 92 256-355 809-903 (1147)
273 cd01122 GP4d_helicase GP4d_hel 92.6 0.45 9.7E-06 47.6 8.1 41 214-264 27-67 (271)
274 PRK14088 dnaA chromosomal repl 92.6 1.2 2.6E-05 48.0 11.8 46 330-375 194-244 (440)
275 PF13871 Helicase_C_4: Helicas 92.6 0.47 1E-05 47.3 8.0 82 471-555 53-146 (278)
276 PRK12377 putative replication 92.6 1.5 3.2E-05 43.3 11.5 98 218-366 102-204 (248)
277 PRK04837 ATP-dependent RNA hel 92.5 0.68 1.5E-05 49.6 9.8 73 256-337 255-330 (423)
278 cd00984 DnaB_C DnaB helicase C 92.5 0.51 1.1E-05 46.2 8.2 47 216-272 12-61 (242)
279 KOG0344 ATP-dependent RNA heli 92.4 0.73 1.6E-05 49.8 9.6 106 229-351 368-476 (593)
280 TIGR00362 DnaA chromosomal rep 92.4 0.75 1.6E-05 49.0 10.0 40 330-370 199-243 (405)
281 TIGR02785 addA_Gpos recombinat 92.4 0.34 7.3E-06 59.0 8.0 66 203-278 2-67 (1232)
282 PRK14086 dnaA chromosomal repl 92.3 0.65 1.4E-05 51.5 9.4 45 328-372 375-424 (617)
283 PRK06871 DNA polymerase III su 92.2 0.74 1.6E-05 47.3 9.1 38 329-366 106-145 (325)
284 TIGR01425 SRP54_euk signal rec 92.2 3.2 6.8E-05 44.3 14.0 16 219-235 102-117 (429)
285 COG1484 DnaC DNA replication p 92.1 1.3 2.8E-05 43.9 10.5 50 216-277 104-153 (254)
286 PHA03333 putative ATPase subun 92.1 5 0.00011 45.0 15.6 152 199-368 166-332 (752)
287 PRK07003 DNA polymerase III su 92.0 1.4 2.9E-05 50.1 11.4 40 329-369 118-159 (830)
288 PRK11192 ATP-dependent RNA hel 91.9 0.88 1.9E-05 48.9 9.9 72 256-336 245-319 (434)
289 KOG0331 ATP-dependent RNA heli 91.8 0.73 1.6E-05 49.8 8.8 72 255-335 340-414 (519)
290 PRK14721 flhF flagellar biosyn 91.7 7.1 0.00015 41.6 16.0 129 216-380 190-324 (420)
291 PRK06964 DNA polymerase III su 91.6 1.1 2.4E-05 46.4 9.7 40 204-245 3-47 (342)
292 PF13177 DNA_pol3_delta2: DNA 91.5 1.8 3.9E-05 39.7 10.0 40 329-368 101-142 (162)
293 cd01124 KaiC KaiC is a circadi 91.4 0.67 1.5E-05 43.2 7.4 48 220-279 2-49 (187)
294 COG1197 Mfd Transcription-repa 91.4 3.2 7E-05 48.9 14.0 142 207-357 732-899 (1139)
295 PRK10590 ATP-dependent RNA hel 91.4 1.1 2.4E-05 48.6 9.9 72 256-336 245-319 (456)
296 KOG0333 U5 snRNP-like RNA heli 91.4 0.75 1.6E-05 49.1 8.1 71 256-335 517-590 (673)
297 TIGR03600 phage_DnaB phage rep 91.4 3.4 7.4E-05 44.3 13.6 37 217-263 194-230 (421)
298 cd03115 SRP The signal recogni 91.3 4 8.7E-05 37.6 12.4 51 330-380 82-136 (173)
299 PRK10416 signal recognition pa 91.2 11 0.00024 38.7 16.4 52 329-380 195-256 (318)
300 COG1474 CDC6 Cdc6-related prot 91.1 1.6 3.4E-05 45.8 10.3 40 328-367 121-163 (366)
301 COG1435 Tdk Thymidine kinase [ 91.1 3.2 7E-05 39.0 11.1 101 218-354 5-108 (201)
302 PF03796 DnaB_C: DnaB-like hel 90.8 0.85 1.8E-05 45.3 7.8 110 219-344 21-144 (259)
303 PRK14723 flhF flagellar biosyn 90.8 2.6 5.7E-05 48.1 12.3 20 217-237 185-204 (767)
304 TIGR00064 ftsY signal recognit 90.7 4.8 0.0001 40.4 13.0 51 330-380 154-214 (272)
305 TIGR02928 orc1/cdc6 family rep 90.7 2.9 6.3E-05 43.7 12.1 25 218-244 41-65 (365)
306 PRK12724 flagellar biosynthesi 90.7 24 0.00052 37.6 18.6 51 329-379 298-356 (432)
307 TIGR02881 spore_V_K stage V sp 90.6 1.6 3.4E-05 43.5 9.5 17 218-235 43-59 (261)
308 PRK01297 ATP-dependent RNA hel 90.6 1.3 2.8E-05 48.3 9.6 73 256-337 335-410 (475)
309 COG4626 Phage terminase-like p 90.5 2.8 6.1E-05 45.5 11.6 147 200-366 59-223 (546)
310 PRK09183 transposase/IS protei 90.5 3 6.5E-05 41.5 11.3 21 214-235 99-119 (259)
311 PHA03368 DNA packaging termina 90.4 2.1 4.5E-05 47.7 10.7 137 214-370 251-392 (738)
312 PF05876 Terminase_GpA: Phage 90.4 0.72 1.6E-05 51.2 7.4 68 202-279 16-86 (557)
313 PRK05973 replicative DNA helic 90.3 2.9 6.3E-05 41.0 10.7 56 212-279 59-114 (237)
314 PRK08699 DNA polymerase III su 90.2 1.9 4.1E-05 44.5 9.9 39 204-244 3-46 (325)
315 PTZ00110 helicase; Provisional 90.2 1.8 3.9E-05 48.0 10.4 72 256-336 377-451 (545)
316 PF06745 KaiC: KaiC; InterPro 90.1 0.56 1.2E-05 45.5 5.7 128 216-368 18-160 (226)
317 KOG0298 DEAD box-containing he 90.1 0.88 1.9E-05 53.4 7.8 160 216-379 373-561 (1394)
318 PLN03025 replication factor C 90.1 3 6.4E-05 42.9 11.3 38 330-368 99-138 (319)
319 PRK06995 flhF flagellar biosyn 90.0 4.3 9.3E-05 44.1 12.6 20 217-237 256-275 (484)
320 PF02534 T4SS-DNA_transf: Type 90.0 0.28 6.1E-06 53.4 3.8 49 218-279 45-93 (469)
321 PRK06904 replicative DNA helic 89.9 2.6 5.7E-05 45.8 11.1 37 218-264 221-258 (472)
322 PRK00440 rfc replication facto 89.9 4.1 8.9E-05 41.5 12.2 37 329-365 101-139 (319)
323 PRK07471 DNA polymerase III su 89.9 3.7 7.9E-05 43.1 11.8 134 219-367 43-180 (365)
324 PRK09112 DNA polymerase III su 89.8 1.7 3.8E-05 45.2 9.3 38 328-365 139-178 (351)
325 PRK11776 ATP-dependent RNA hel 89.7 1.6 3.5E-05 47.4 9.4 74 256-338 242-318 (460)
326 KOG1133 Helicase of the DEAD s 89.7 23 0.0005 39.6 17.6 41 331-381 527-567 (821)
327 cd01126 TraG_VirD4 The TraG/Tr 89.7 0.19 4.2E-06 53.1 2.2 48 219-279 1-48 (384)
328 PRK13897 type IV secretion sys 89.6 0.31 6.6E-06 54.4 3.7 56 218-289 159-214 (606)
329 PRK14952 DNA polymerase III su 89.6 1.2 2.5E-05 49.7 8.2 40 329-369 117-158 (584)
330 PRK14961 DNA polymerase III su 89.6 3.6 7.9E-05 43.1 11.6 36 329-364 118-155 (363)
331 TIGR00643 recG ATP-dependent D 89.6 15 0.00032 41.7 17.2 93 255-355 447-550 (630)
332 PRK07993 DNA polymerase III su 89.5 1.7 3.7E-05 44.9 8.9 39 328-366 106-146 (334)
333 CHL00181 cbbX CbbX; Provisiona 89.5 4.7 0.0001 40.7 12.0 18 217-235 59-76 (287)
334 TIGR00708 cobA cob(I)alamin ad 89.5 2.2 4.7E-05 39.6 8.6 51 328-378 95-150 (173)
335 PRK06090 DNA polymerase III su 89.5 5 0.00011 41.2 12.1 39 328-366 106-146 (319)
336 TIGR00614 recQ_fam ATP-depende 89.3 1.3 2.9E-05 48.1 8.4 76 255-339 225-303 (470)
337 PRK13851 type IV secretion sys 89.2 0.53 1.2E-05 48.8 4.9 48 210-269 155-202 (344)
338 PRK12323 DNA polymerase III su 89.1 2.7 5.9E-05 47.0 10.5 37 329-365 123-161 (700)
339 PRK08533 flagellar accessory p 89.1 2.2 4.7E-05 41.7 8.9 52 216-279 23-74 (230)
340 PRK14958 DNA polymerase III su 89.1 4.8 0.0001 44.2 12.4 37 329-365 118-156 (509)
341 TIGR00678 holB DNA polymerase 89.0 1.9 4E-05 40.5 8.2 39 328-367 94-134 (188)
342 COG0470 HolB ATPase involved i 89.0 2.3 5E-05 43.4 9.5 39 328-366 107-147 (325)
343 PRK07994 DNA polymerase III su 88.9 3.5 7.5E-05 46.4 11.4 40 329-369 118-159 (647)
344 TIGR03877 thermo_KaiC_1 KaiC d 88.9 1.6 3.4E-05 42.8 7.9 52 216-279 20-71 (237)
345 KOG3089 Predicted DEAD-box-con 88.9 0.63 1.4E-05 44.0 4.6 44 296-339 186-229 (271)
346 TIGR00959 ffh signal recogniti 88.9 6.3 0.00014 42.2 12.8 86 219-317 101-194 (428)
347 PRK12727 flagellar biosynthesi 88.9 6.6 0.00014 43.0 13.0 62 313-379 415-481 (559)
348 PHA02544 44 clamp loader, smal 88.8 4.1 8.8E-05 41.7 11.2 36 330-365 100-138 (316)
349 PRK11634 ATP-dependent RNA hel 88.8 2.2 4.9E-05 48.1 9.9 72 256-336 245-319 (629)
350 TIGR03881 KaiC_arch_4 KaiC dom 88.6 3.7 8E-05 39.8 10.2 52 216-279 19-70 (229)
351 COG4098 comFA Superfamily II D 88.6 10 0.00022 38.8 13.1 110 255-372 304-420 (441)
352 PF00437 T2SE: Type II/IV secr 88.4 1.8 3.8E-05 43.3 8.0 44 215-269 125-168 (270)
353 PRK07004 replicative DNA helic 88.2 1.6 3.5E-05 47.3 8.0 46 217-272 213-261 (460)
354 PRK14956 DNA polymerase III su 88.2 1.3 2.7E-05 47.9 7.0 26 329-355 120-145 (484)
355 PF05729 NACHT: NACHT domain 88.1 2.6 5.7E-05 38.0 8.3 25 220-246 3-27 (166)
356 PRK05563 DNA polymerase III su 88.1 5.6 0.00012 44.3 12.3 41 328-369 117-159 (559)
357 PRK11057 ATP-dependent DNA hel 87.9 2.5 5.4E-05 47.6 9.5 73 255-336 235-310 (607)
358 TIGR02880 cbbX_cfxQ probable R 87.8 4.7 0.0001 40.7 10.6 18 217-235 58-75 (284)
359 PRK10867 signal recognition pa 87.7 7.9 0.00017 41.5 12.7 86 219-317 102-195 (433)
360 PRK09435 membrane ATPase/prote 87.6 9.1 0.0002 39.5 12.7 111 268-381 133-257 (332)
361 PRK14960 DNA polymerase III su 87.6 3 6.4E-05 46.8 9.5 39 329-368 117-157 (702)
362 PRK14950 DNA polymerase III su 87.5 3.1 6.7E-05 46.6 9.9 39 328-367 118-158 (585)
363 KOG0354 DEAD-box like helicase 87.5 2 4.3E-05 48.4 8.1 79 255-339 412-501 (746)
364 PRK10917 ATP-dependent DNA hel 87.4 28 0.00061 39.9 17.7 93 255-355 470-573 (681)
365 PRK14964 DNA polymerase III su 87.4 4.6 9.9E-05 44.0 10.8 40 328-368 114-155 (491)
366 PTZ00424 helicase 45; Provisio 87.3 3.5 7.7E-05 43.6 10.0 72 256-336 267-341 (401)
367 TIGR01970 DEAH_box_HrpB ATP-de 87.3 4 8.7E-05 47.5 10.9 74 257-336 210-286 (819)
368 PLN00206 DEAD-box ATP-dependen 87.3 2.1 4.5E-05 47.3 8.3 73 256-336 367-442 (518)
369 PRK09111 DNA polymerase III su 87.2 3 6.4E-05 46.7 9.5 38 328-365 130-169 (598)
370 PF13173 AAA_14: AAA domain 87.2 4.9 0.00011 35.0 9.2 36 330-366 61-97 (128)
371 TIGR00665 DnaB replicative DNA 87.1 6.7 0.00015 42.2 12.0 36 218-263 196-231 (434)
372 PRK05896 DNA polymerase III su 87.1 4.7 0.0001 44.9 10.8 40 329-369 118-159 (605)
373 PRK13850 type IV secretion sys 87.1 0.58 1.3E-05 52.9 3.9 49 218-279 140-188 (670)
374 PRK08006 replicative DNA helic 87.1 7.1 0.00015 42.5 12.1 36 218-263 224-260 (471)
375 PF00004 AAA: ATPase family as 87.0 4.6 0.0001 34.8 9.0 14 331-344 59-72 (132)
376 PRK14949 DNA polymerase III su 86.8 1.8 4E-05 49.9 7.6 42 329-371 118-161 (944)
377 PRK05748 replicative DNA helic 86.6 11 0.00024 40.7 13.4 36 218-263 204-239 (448)
378 PRK11664 ATP-dependent RNA hel 86.5 4.6 9.9E-05 47.0 10.8 75 256-336 212-289 (812)
379 PRK05986 cob(I)alamin adenolsy 86.4 4.7 0.0001 38.0 8.9 51 328-378 113-168 (191)
380 PRK05298 excinuclease ABC subu 86.3 14 0.00029 42.1 14.3 79 255-342 445-526 (652)
381 PRK08840 replicative DNA helic 86.2 7.7 0.00017 42.1 11.8 25 218-244 218-242 (464)
382 COG2805 PilT Tfp pilus assembl 86.1 0.53 1.1E-05 47.1 2.6 121 219-358 127-249 (353)
383 PRK14969 DNA polymerase III su 85.9 4.5 9.8E-05 44.7 10.0 37 329-365 118-156 (527)
384 PF03237 Terminase_6: Terminas 85.8 11 0.00024 38.8 12.7 104 221-344 1-111 (384)
385 PRK08691 DNA polymerase III su 85.8 5.8 0.00013 44.8 10.7 37 329-365 118-156 (709)
386 PRK13342 recombination factor 85.6 4.4 9.6E-05 43.3 9.6 38 330-369 92-129 (413)
387 PRK08760 replicative DNA helic 85.6 8.9 0.00019 41.8 12.0 37 218-264 229-266 (476)
388 PHA00729 NTP-binding motif con 85.6 6.2 0.00013 38.3 9.5 71 307-377 59-137 (226)
389 PRK05636 replicative DNA helic 85.5 14 0.0003 40.6 13.4 24 218-243 265-289 (505)
390 PRK07940 DNA polymerase III su 85.5 6.5 0.00014 41.7 10.5 43 329-372 116-160 (394)
391 PRK13900 type IV secretion sys 85.4 1.3 2.9E-05 45.7 5.3 46 213-270 156-201 (332)
392 cd01129 PulE-GspE PulE/GspE Th 85.4 6.5 0.00014 39.2 10.1 38 204-243 65-104 (264)
393 TIGR01389 recQ ATP-dependent D 85.3 4 8.6E-05 45.9 9.5 72 256-336 224-298 (591)
394 KOG0739 AAA+-type ATPase [Post 85.2 10 0.00023 38.0 10.9 125 211-390 155-299 (439)
395 PRK06645 DNA polymerase III su 84.9 5.2 0.00011 43.8 9.7 39 328-367 126-166 (507)
396 KOG1015 Transcription regulato 84.9 2.8 6.1E-05 48.0 7.6 122 411-539 1125-1277(1567)
397 PRK08506 replicative DNA helic 84.8 3.6 7.8E-05 44.8 8.5 35 218-263 193-227 (472)
398 PRK04195 replication factor C 84.8 5.8 0.00013 43.3 10.2 35 330-364 98-136 (482)
399 PRK14963 DNA polymerase III su 84.7 4.7 0.0001 44.2 9.3 27 328-355 114-140 (504)
400 PRK13822 conjugal transfer cou 84.6 0.86 1.9E-05 51.3 3.7 49 218-279 225-273 (641)
401 COG4962 CpaF Flp pilus assembl 84.5 1.8 3.8E-05 44.4 5.4 59 204-274 159-218 (355)
402 COG0552 FtsY Signal recognitio 84.5 24 0.00052 36.1 13.4 126 220-380 142-281 (340)
403 TIGR01650 PD_CobS cobaltochela 84.4 8.7 0.00019 39.4 10.5 22 212-234 59-80 (327)
404 PRK14951 DNA polymerase III su 84.2 2.6 5.6E-05 47.2 7.2 41 329-370 123-165 (618)
405 smart00492 HELICc3 helicase su 84.2 8.9 0.00019 34.3 9.4 42 468-511 36-79 (141)
406 KOG0652 26S proteasome regulat 84.1 4.6 9.9E-05 39.6 7.8 17 218-235 206-222 (424)
407 PRK14955 DNA polymerase III su 83.9 4.5 9.8E-05 43.0 8.7 39 328-367 125-165 (397)
408 PRK13876 conjugal transfer cou 83.5 1.1 2.3E-05 50.7 3.8 49 218-279 145-193 (663)
409 PRK07399 DNA polymerase III su 83.5 9.6 0.00021 39.1 10.5 55 309-365 104-160 (314)
410 PF03969 AFG1_ATPase: AFG1-lik 83.4 20 0.00043 37.6 12.9 105 217-371 62-171 (362)
411 TIGR02767 TraG-Ti Ti-type conj 83.3 1.1 2.4E-05 50.1 3.9 49 218-279 212-260 (623)
412 PRK13709 conjugal transfer nic 83.1 1.1E+02 0.0023 38.9 20.7 194 204-453 415-613 (1747)
413 COG1111 MPH1 ERCC4-like helica 82.9 17 0.00037 39.1 12.0 88 256-356 366-465 (542)
414 TIGR03689 pup_AAA proteasome A 82.9 3.6 7.7E-05 45.0 7.4 16 218-234 217-232 (512)
415 KOG0330 ATP-dependent RNA heli 82.8 4.4 9.5E-05 41.9 7.4 71 256-335 300-373 (476)
416 cd00079 HELICc Helicase superf 82.7 6.5 0.00014 33.7 7.9 76 256-340 28-106 (131)
417 PRK14965 DNA polymerase III su 82.6 5.9 0.00013 44.3 9.2 40 329-369 118-159 (576)
418 PRK14948 DNA polymerase III su 82.6 4.7 0.0001 45.4 8.4 30 329-358 120-151 (620)
419 PRK08939 primosomal protein Dn 82.6 10 0.00022 38.7 10.3 17 217-234 156-172 (306)
420 PRK14959 DNA polymerase III su 82.6 4.8 0.0001 45.0 8.4 41 329-370 118-160 (624)
421 PRK11034 clpA ATP-dependent Cl 82.4 9.3 0.0002 44.1 10.9 31 204-235 192-224 (758)
422 TIGR01054 rgy reverse gyrase. 82.4 3.4 7.3E-05 50.0 7.6 75 256-336 326-404 (1171)
423 PRK04328 hypothetical protein; 82.4 6.1 0.00013 39.0 8.4 52 216-279 22-73 (249)
424 PRK13767 ATP-dependent helicas 82.4 8.2 0.00018 45.5 10.7 89 256-355 284-378 (876)
425 PRK08451 DNA polymerase III su 82.3 4.3 9.4E-05 44.6 7.8 38 328-365 115-154 (535)
426 COG0556 UvrB Helicase subunit 82.3 16 0.00035 39.6 11.5 115 255-378 445-567 (663)
427 TIGR00635 ruvB Holliday juncti 82.2 2.2 4.9E-05 43.3 5.4 16 218-234 31-46 (305)
428 PRK14962 DNA polymerase III su 82.2 5.7 0.00012 43.2 8.7 27 328-355 115-141 (472)
429 TIGR03878 thermo_KaiC_2 KaiC d 82.2 9.6 0.00021 37.9 9.7 52 216-278 35-89 (259)
430 TIGR00595 priA primosomal prot 82.1 18 0.00039 39.8 12.6 68 270-344 272-344 (505)
431 COG3973 Superfamily I DNA and 82.1 4.4 9.6E-05 44.4 7.5 76 206-286 213-290 (747)
432 PRK14957 DNA polymerase III su 82.0 5.3 0.00011 44.1 8.4 37 329-365 118-156 (546)
433 KOG0701 dsRNA-specific nucleas 82.0 1.1 2.4E-05 54.5 3.4 90 435-527 294-399 (1606)
434 PF12846 AAA_10: AAA-like doma 81.6 2.7 5.9E-05 42.2 5.7 42 218-270 2-43 (304)
435 PRK06321 replicative DNA helic 81.3 4.8 0.0001 43.7 7.7 33 210-244 215-251 (472)
436 COG2909 MalT ATP-dependent tra 81.3 16 0.00035 41.8 11.8 41 330-370 129-172 (894)
437 PRK06067 flagellar accessory p 81.3 4.7 0.0001 39.3 7.1 52 216-279 24-75 (234)
438 PRK07133 DNA polymerase III su 81.1 3.4 7.3E-05 47.0 6.6 40 329-369 117-158 (725)
439 TIGR03817 DECH_helic helicase/ 81.0 6.8 0.00015 45.2 9.2 89 256-355 271-367 (742)
440 TIGR03499 FlhF flagellar biosy 80.8 3.5 7.6E-05 41.6 6.1 19 216-235 193-211 (282)
441 COG1200 RecG RecG-like helicas 80.7 27 0.00058 39.2 13.0 101 255-363 472-584 (677)
442 PRK05595 replicative DNA helic 80.6 13 0.00028 40.2 10.8 49 204-264 186-238 (444)
443 PRK09376 rho transcription ter 80.5 6.9 0.00015 41.2 8.1 20 213-233 165-184 (416)
444 PF06733 DEAD_2: DEAD_2; Inte 80.5 1 2.2E-05 41.8 2.0 43 300-344 114-159 (174)
445 COG0630 VirB11 Type IV secreto 80.4 1.7 3.6E-05 44.6 3.7 54 204-269 129-183 (312)
446 PRK09401 reverse gyrase; Revie 80.4 3.8 8.2E-05 49.6 7.1 74 256-336 328-405 (1176)
447 PRK10436 hypothetical protein; 80.4 8.3 0.00018 41.8 9.1 39 204-244 203-243 (462)
448 TIGR02688 conserved hypothetic 80.4 6.7 0.00015 41.6 8.1 24 212-236 204-227 (449)
449 PRK13341 recombination factor 80.2 13 0.00029 42.6 11.0 41 330-372 109-149 (725)
450 KOG2036 Predicted P-loop ATPas 80.2 5.6 0.00012 44.1 7.5 134 204-370 255-413 (1011)
451 PHA02653 RNA helicase NPH-II; 80.1 5.6 0.00012 45.2 7.9 73 256-335 395-469 (675)
452 KOG0738 AAA+-type ATPase [Post 79.9 8.3 0.00018 40.1 8.3 23 211-234 234-261 (491)
453 TIGR02533 type_II_gspE general 79.7 8 0.00017 42.2 8.8 38 204-243 227-266 (486)
454 PF03668 ATP_bind_2: P-loop AT 79.6 10 0.00022 38.0 8.7 27 441-468 255-281 (284)
455 cd01127 TrwB Bacterial conjuga 79.5 1.5 3.3E-05 46.7 3.2 52 211-273 36-87 (410)
456 PRK06620 hypothetical protein; 79.3 11 0.00023 36.4 8.7 108 256-371 14-126 (214)
457 COG2842 Uncharacterized ATPase 79.0 6.8 0.00015 39.3 7.2 107 212-367 89-201 (297)
458 COG1221 PspF Transcriptional r 78.9 8.8 0.00019 40.5 8.4 158 216-428 100-271 (403)
459 TIGR00763 lon ATP-dependent pr 78.9 11 0.00024 43.9 10.1 29 313-344 400-428 (775)
460 COG2109 BtuR ATP:corrinoid ade 78.9 9.8 0.00021 35.6 7.7 50 330-379 122-176 (198)
461 smart00491 HELICc2 helicase su 78.9 15 0.00032 32.9 8.9 40 469-511 34-80 (142)
462 TIGR02012 tigrfam_recA protein 78.7 7.9 0.00017 39.7 7.9 43 216-269 54-96 (321)
463 PRK14954 DNA polymerase III su 78.6 5 0.00011 45.1 6.9 37 328-364 125-163 (620)
464 TIGR03346 chaperone_ClpB ATP-d 78.4 12 0.00027 43.9 10.4 17 218-235 195-211 (852)
465 TIGR00767 rho transcription te 78.4 8.9 0.00019 40.5 8.2 20 214-234 165-184 (415)
466 PRK10865 protein disaggregatio 78.4 17 0.00037 42.8 11.5 17 218-235 200-216 (857)
467 PRK11823 DNA repair protein Ra 77.9 9.3 0.0002 41.3 8.6 52 216-279 79-130 (446)
468 PF10412 TrwB_AAD_bind: Type I 77.7 2.6 5.7E-05 44.6 4.2 50 214-274 12-61 (386)
469 COG2804 PulE Type II secretory 77.7 3.6 7.9E-05 44.3 5.2 42 203-246 242-285 (500)
470 KOG1513 Nuclear helicase MOP-3 77.6 1.9 4E-05 48.4 3.0 161 203-376 265-462 (1300)
471 CHL00095 clpC Clp protease ATP 77.4 15 0.00033 43.0 10.7 17 218-235 201-217 (821)
472 PRK09694 helicase Cas3; Provis 77.3 9.7 0.00021 44.6 8.9 78 255-339 559-647 (878)
473 PRK13880 conjugal transfer cou 77.2 1.2 2.5E-05 50.3 1.5 46 218-276 176-221 (636)
474 TIGR03345 VI_ClpV1 type VI sec 77.2 8.5 0.00018 45.1 8.5 16 218-234 209-224 (852)
475 COG0466 Lon ATP-dependent Lon 77.1 10 0.00022 42.5 8.5 61 288-355 381-445 (782)
476 PRK11131 ATP-dependent RNA hel 77.0 14 0.0003 44.9 10.2 74 256-335 286-360 (1294)
477 KOG0341 DEAD-box protein abstr 77.0 7.2 0.00016 40.3 6.8 71 254-333 419-492 (610)
478 PRK06647 DNA polymerase III su 76.7 16 0.00035 40.7 10.2 40 328-368 117-158 (563)
479 TIGR03819 heli_sec_ATPase heli 76.6 3.8 8.3E-05 42.5 5.0 54 204-269 164-218 (340)
480 COG2256 MGS1 ATPase related to 76.5 17 0.00038 38.0 9.5 17 218-235 49-65 (436)
481 PHA02542 41 41 helicase; Provi 76.4 5 0.00011 43.6 5.9 35 218-263 190-225 (473)
482 TIGR03743 SXT_TraD conjugative 76.3 7.5 0.00016 43.9 7.6 53 217-280 176-230 (634)
483 cd00983 recA RecA is a bacter 76.3 7.2 0.00016 40.1 6.8 43 216-269 54-96 (325)
484 TIGR02237 recomb_radB DNA repa 76.3 12 0.00027 35.5 8.2 39 216-265 11-49 (209)
485 PLN03137 ATP-dependent DNA hel 76.2 7.3 0.00016 46.4 7.5 72 256-336 680-754 (1195)
486 PHA02535 P terminase ATPase su 76.0 26 0.00056 38.8 11.2 135 204-367 140-279 (581)
487 PRK09165 replicative DNA helic 76.0 14 0.0003 40.6 9.4 23 219-243 219-241 (497)
488 PRK08058 DNA polymerase III su 75.8 17 0.00037 37.5 9.5 39 328-367 108-148 (329)
489 PF02572 CobA_CobO_BtuR: ATP:c 75.6 21 0.00046 33.0 9.1 50 328-377 94-148 (172)
490 PRK06646 DNA polymerase III su 75.6 64 0.0014 29.3 12.6 129 404-558 6-139 (154)
491 PRK10263 DNA translocase FtsK; 75.4 14 0.00031 44.5 9.5 26 218-244 1011-1036(1355)
492 TIGR01967 DEAH_box_HrpA ATP-de 75.1 18 0.00038 44.1 10.5 73 257-335 280-353 (1283)
493 TIGR02538 type_IV_pilB type IV 75.1 12 0.00026 41.8 8.7 38 204-243 301-340 (564)
494 COG1219 ClpX ATP-dependent pro 75.0 1.8 3.9E-05 43.7 1.9 27 216-245 96-122 (408)
495 PRK14971 DNA polymerase III su 74.9 9.5 0.00021 42.9 7.9 40 328-368 119-160 (614)
496 TIGR01587 cas3_core CRISPR-ass 74.9 9.6 0.00021 39.6 7.6 74 256-337 222-302 (358)
497 PRK04914 ATP-dependent helicas 74.9 19 0.0004 42.7 10.4 75 256-338 493-572 (956)
498 COG3973 Superfamily I DNA and 74.9 46 0.00099 36.9 12.4 157 329-510 527-717 (747)
499 KOG0058 Peptide exporter, ABC 74.8 7.5 0.00016 43.6 6.8 38 328-366 620-660 (716)
500 cd01131 PilT Pilus retraction 74.7 4.4 9.4E-05 38.5 4.5 39 220-268 4-42 (198)
No 1
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-81 Score=629.58 Aligned_cols=497 Identities=23% Similarity=0.302 Sum_probs=439.6
Q ss_pred CCCCchHHHHhhhHHHHHhhhccCC-----CCchhHHHHHHHHHhhhcc---cCCcc----cccccccCCCCCCCccCcc
Q 008235 1 MTKGDDAVMRRRNKAKIKKLNNKNT-----SSNVSARVAAVIAAKKRRK---SGKRR----QCQGMCFSLPTLDDPFNDR 68 (573)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~ 68 (573)
|||++|..++++++..+|++.++++ .-.++++++.+++.++++| .+++. .|++||+..|+.++||+.+
T Consensus 84 MA~~~d~~~sd~~~~e~kk~eRkn~dd~~p~~~vr~dI~~e~aae~~~kym~e~k~~~~~~e~~~~~leydsd~nPi~~~ 163 (731)
T KOG0339|consen 84 MAKIEDQAQSDKKPLEQKKKERKNDDDDDPTATVRADIDEEDAAEALFKYMSENKRAGAAKECDDMCLEYDSDGNPIAPD 163 (731)
T ss_pred hhhhhhhhhccCCccchHHHhhhccCCCccchhhhcchhhHHhHHHHHHHhhhcccchhhhhcccceeecCCCCCccCcc
Confidence 9999999999999999999877773 3457999999999999999 78877 8999999999999999873
Q ss_pred c--chhhhhhhhhhhhccccccccccccccCCcccccccccccCCCCCCCcccchHHhhhcCcccccccccccccccccc
Q 008235 69 Y--DKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQTKEKAINLKNSQDKSLLFIDGVEKRTG 146 (573)
Q Consensus 69 ~--~~~~~~~~~~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 146 (573)
+ ..+... ++......+++++++|.++.++.....
T Consensus 164 kr~idpl~~--------------------------------------------idhs~i~y~p~~kdfy~e~esI~gl~~ 199 (731)
T KOG0339|consen 164 KRQIDPLPP--------------------------------------------IDHSEIDYEPFNKDFYEEHESIEGLTK 199 (731)
T ss_pred cccCCCCCC--------------------------------------------cchhhccccccccccccChhhhhcccc
Confidence 2 111111 111223456777888888777777655
Q ss_pred c-----ccccceEEccCCCCCCCCCCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEE
Q 008235 147 N-----VERAEVHLNGKSCANGHHGQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL 221 (573)
Q Consensus 147 ~-----~~~~~i~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl 221 (573)
+ +...++.+.|.+.|.| ..+|+.++|...+ +.++++ ..|.+| ||||.+++|..+.|+||+
T Consensus 200 ~d~~~~r~~Lnlrv~g~s~~rp--vtsfeh~gfDkqL----m~airk----~Ey~kp-----tpiq~qalptalsgrdvi 264 (731)
T KOG0339|consen 200 MDVIDLRLTLNLRVSGSSPPRP--VTSFEHFGFDKQL----MTAIRK----SEYEKP-----TPIQCQALPTALSGRDVI 264 (731)
T ss_pred ccchhhHhhhcceeccCCCCCC--cchhhhcCchHHH----HHHHhh----hhcccC-----Ccccccccccccccccch
Confidence 5 5568888899888877 6678888888777 666654 577888 999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcCCcEEEEeCCCCCHHHHHH
Q 008235 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQIT 300 (573)
Q Consensus 222 ~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~~i~~~~~~gg~~~~~~~~ 300 (573)
++|.|| ||||.||+.|++.++..++.... +.||.+||||||||||.||+.+|++| +.+||+++++|||.+.++|..
T Consensus 265 gIAktg-SgktaAfi~pm~~himdq~eL~~--g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k 341 (731)
T KOG0339|consen 265 GIAKTG-SGKTAAFIWPMIVHIMDQPELKP--GEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSK 341 (731)
T ss_pred heeecc-CcchhHHHHHHHHHhcchhhhcC--CCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHH
Confidence 999999 99999999999999998876653 37999999999999999999999999 667999999999999999999
Q ss_pred HhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHH
Q 008235 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377 (573)
Q Consensus 301 ~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~ 377 (573)
.|.. +++|||||||||++++..+..++.++.||||||||+|++ ..+++.|.+.+++++|+++||||++..++.+++
T Consensus 342 ~Lk~-g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lar 420 (731)
T KOG0339|consen 342 ELKE-GAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLAR 420 (731)
T ss_pred hhhc-CCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHH
Confidence 9997 899999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCC
Q 008235 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKG 457 (573)
Q Consensus 378 ~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g 457 (573)
.+|.+|+. +..+. ....+..|.|.+.+|.+++.|+.+|+.-|-.+.. .+++|||+.-...+++++..|+..+
T Consensus 421 d~L~dpVr-vVqg~-vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S------~gkvlifVTKk~~~e~i~a~Lklk~ 492 (731)
T KOG0339|consen 421 DILSDPVR-VVQGE-VGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSS------EGKVLIFVTKKADAEEIAANLKLKG 492 (731)
T ss_pred HHhcCCee-EEEee-hhccccchhheeeeccCcHHHHHHHHHHhhhhcc------CCcEEEEEeccCCHHHHHHHhcccc
Confidence 99999984 44443 3577889999999999999999988888877654 5799999999999999999999999
Q ss_pred CCeeeecCCCHHH-----HHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceE
Q 008235 458 YSISTGSNCIVSH-----IKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGIL 532 (573)
Q Consensus 458 ~~~~~~~~~~~~~-----~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~ 532 (573)
+++.. +||++.| +|..| +.++..++++ +|++ +||+||+++..|||||+-++++.|.||+|||||+|..|.+
T Consensus 493 ~~v~l-lhgdkdqa~rn~~ls~f-Kkk~~~Vlva-tDva-argldI~~ikTVvnyD~ardIdththrigrtgRag~kGva 568 (731)
T KOG0339|consen 493 FNVSL-LHGDKDQAERNEVLSKF-KKKRKPVLVA-TDVA-ARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVA 568 (731)
T ss_pred ceeee-ecCchhhHHHHHHHHHH-hhcCCceEEE-eeHh-hcCCCccccceeecccccchhHHHHHHhhhccccccccee
Confidence 99986 5998765 69999 8888888877 7999 6999999999999999999999999999999999999999
Q ss_pred EEEeccccHHHHHHHHHHHHHcCCCCCHHHHHhhhcCCCC
Q 008235 533 HSFFTKDDAAHAGQMIEILEQCGQVVPDALRDLCHTSPML 572 (573)
Q Consensus 533 i~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~~~~~~ 572 (573)
+++++++|..++..|++.|+.++|.||+.|..|+-.+++.
T Consensus 569 yTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk~s~f 608 (731)
T KOG0339|consen 569 YTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMKSSWF 608 (731)
T ss_pred eEEechhhHHHhhHHHHHHhhccccCChHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999877663
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-80 Score=642.21 Aligned_cols=369 Identities=20% Similarity=0.325 Sum_probs=340.5
Q ss_pred hHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhc-hhccCCCCCCcEEE
Q 008235 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIAR-KEKEGFSFTGPFLL 260 (573)
Q Consensus 182 ~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~-~~~~~~~~~~~~~L 260 (573)
+...+..++...||..| ||||+++||.++.|+|++++|.|| |||||||+||++.++... .... ..++|++|
T Consensus 98 ls~~~~~~lk~~g~~~P-----tpIQaq~wp~~l~GrD~v~iA~TG-SGKTLay~lP~i~~l~~~~~~~~--~~~~P~vL 169 (519)
T KOG0331|consen 98 LSEELMKALKEQGFEKP-----TPIQAQGWPIALSGRDLVGIARTG-SGKTLAYLLPAIVHLNNEQGKLS--RGDGPIVL 169 (519)
T ss_pred ccHHHHHHHHhcCCCCC-----chhhhcccceeccCCceEEEeccC-CcchhhhhhHHHHHHHhcccccc--CCCCCeEE
Confidence 34555677888999999 999999999999999999999999 999999999999999973 2222 23699999
Q ss_pred EEcccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCc
Q 008235 261 FLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (573)
Q Consensus 261 il~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEa 339 (573)
||+||||||.||..++..++. ++++++|+|||.+...|.+.|.+ +++|+|||||||+|+|+.+.++|++|.|||+|||
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~-gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEA 248 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER-GVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEA 248 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc-CCcEEEeCChHHHHHHHcCCccccceeEEEeccH
Confidence 999999999999999999944 58999999999999999999999 8999999999999999999999999999999999
Q ss_pred ccccC---cchHHHHHHhc-CCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCC-ccccccceEEEEEEcCChhHHH
Q 008235 340 DSLSK---GDTLSLIRQSI-SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQS-VASQSACIIQSVNVCASDEEKI 414 (573)
Q Consensus 340 d~ll~---~~~l~~Il~~l-~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~-~~~~~~~i~~~~~~~~~~~~k~ 414 (573)
|+|++ .++++.|+..+ ++.+|+++||||||.+++.++..|+.+|+ .+.++.. +..+..+|.|.+..|+ +..|.
T Consensus 249 DrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~-~i~ig~~~~~~a~~~i~qive~~~-~~~K~ 326 (519)
T KOG0331|consen 249 DRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPI-QINVGNKKELKANHNIRQIVEVCD-ETAKL 326 (519)
T ss_pred HhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCce-EEEecchhhhhhhcchhhhhhhcC-HHHHH
Confidence 99999 99999999999 67779999999999999999999999997 7777754 6678899999999997 89999
Q ss_pred HHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHH-----HHHHHHhcCCCCCeEEEEe
Q 008235 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSH-----IKNSVEADGRKRPAVSMID 489 (573)
Q Consensus 415 ~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~-----~l~~F~~~g~~~~l~~lvd 489 (573)
..|..+|..+.. .. .+++||||+|+..|++|+..|...++++.+ +||+++| +|+.| ++|+..+|++ ||
T Consensus 327 ~~l~~lL~~~~~-~~---~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~-iHGd~sQ~eR~~~L~~F-reG~~~vLVA-Td 399 (519)
T KOG0331|consen 327 RKLGKLLEDISS-DS---EGKVIIFCETKRTCDELARNLRRKGWPAVA-IHGDKSQSERDWVLKGF-REGKSPVLVA-TD 399 (519)
T ss_pred HHHHHHHHHHhc-cC---CCcEEEEecchhhHHHHHHHHHhcCcceee-ecccccHHHHHHHHHhc-ccCCcceEEE-cc
Confidence 999999999883 22 589999999999999999999999999997 5887654 79999 9999999999 89
Q ss_pred ccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHhhhcC
Q 008235 490 KDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDLCHTS 569 (573)
Q Consensus 490 ~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~~~ 569 (573)
++ +||||||+|++|||||+|.++++||||+|||||+|+.|.+++|++..+...+..+.++|++++|.||+.+..++..+
T Consensus 400 VA-aRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~ 478 (519)
T KOG0331|consen 400 VA-ARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVS 478 (519)
T ss_pred cc-cccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhc
Confidence 99 69999999999999999999999999999999999999999999999999999999999999999999999997554
No 3
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-75 Score=571.37 Aligned_cols=423 Identities=20% Similarity=0.240 Sum_probs=367.3
Q ss_pred cchHHhhhcCccccccccccccccccccc------ccccceEEc----cCCCCCCCCCCCccccCCChHHHHHhHHHHHH
Q 008235 119 QTKEKAINLKNSQDKSLLFIDGVEKRTGN------VERAEVHLN----GKSCANGHHGQACEKLDCPSKFLILCLNAIEN 188 (573)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~------~~~~~i~~~----g~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~ 188 (573)
-.+.+|..++|-.+++|...+...+.+.+ .+..+|++. |.-.|-| ...|.+.+ -| -+-..+..
T Consensus 161 ~e~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIP--nP~ctFdd---AF--q~~pevme 233 (629)
T KOG0336|consen 161 DEKFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIP--NPVCTFDD---AF--QCYPEVME 233 (629)
T ss_pred hhhcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCC--CCcCcHHH---HH--hhhHHHHH
Confidence 34567888999999999988877776654 445566653 3333322 11222221 11 12334445
Q ss_pred HHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHH
Q 008235 189 AMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268 (573)
Q Consensus 189 ~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreL 268 (573)
.+.+.||.+| ||||++|||.+|+|.|++++|.|| +||||+|++|.+.++..++.... +..+|.+|+++|||||
T Consensus 234 nIkK~GFqKP-----tPIqSQaWPI~LQG~DliGVAQTg-tgKtL~~L~pg~ihi~aqp~~~~-qr~~p~~lvl~ptreL 306 (629)
T KOG0336|consen 234 NIKKTGFQKP-----TPIQSQAWPILLQGIDLIGVAQTG-TGKTLAFLLPGFIHIDAQPKRRE-QRNGPGVLVLTPTREL 306 (629)
T ss_pred HHHhccCCCC-----CcchhcccceeecCcceEEEEecC-CCcCHHHhccceeeeeccchhhh-ccCCCceEEEeccHHH
Confidence 5667899999 999999999999999999999999 99999999999999987764332 4579999999999999
Q ss_pred HHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---c
Q 008235 269 AAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---G 345 (573)
Q Consensus 269 a~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~ 345 (573)
|.|+.-.+.++.+.|.+.+|+|||.+...|++.|++ +++|+|+|||||.++...+.++|..+.||||||||+|+| +
T Consensus 307 alqie~e~~kysyng~ksvc~ygggnR~eqie~lkr-gveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFE 385 (629)
T KOG0336|consen 307 ALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKR-GVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFE 385 (629)
T ss_pred HHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhc-CceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhccccc
Confidence 999999999998889999999999999999999999 899999999999999999999999999999999999999 8
Q ss_pred chHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHh
Q 008235 346 DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAY 425 (573)
Q Consensus 346 ~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~ 425 (573)
++++.|+-.+++++|+++.|||||+.++.++..|+++|+ .+.++..+......+.|.+++. .+.+|+..+-.++....
T Consensus 386 pqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~-~v~vGsLdL~a~~sVkQ~i~v~-~d~~k~~~~~~f~~~ms 463 (629)
T KOG0336|consen 386 PQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPM-IVYVGSLDLVAVKSVKQNIIVT-TDSEKLEIVQFFVANMS 463 (629)
T ss_pred HHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCce-EEEecccceeeeeeeeeeEEec-ccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999997 7888887778888999999555 57888866666665542
Q ss_pred ccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHH-----HHHHHHhcCCCCCeEEEEeccccCCCccCC
Q 008235 426 GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSH-----IKNSVEADGRKRPAVSMIDKDHISTAELEE 500 (573)
Q Consensus 426 ~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~-----~l~~F~~~g~~~~l~~lvd~~s~rGlDip~ 500 (573)
.+.++||||.++..|+.|+..|...|+.+..+ ||+++| +++.| +.|..++|++ +|++| ||||+++
T Consensus 464 ------~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~l-HG~r~Q~DrE~al~~~-ksG~vrILva-TDlaS-RGlDv~D 533 (629)
T KOG0336|consen 464 ------SNDKVIIFVSRKVMADHLSSDFCLKGISSQSL-HGNREQSDREMALEDF-KSGEVRILVA-TDLAS-RGLDVPD 533 (629)
T ss_pred ------CCceEEEEEechhhhhhccchhhhcccchhhc-cCChhhhhHHHHHHhh-hcCceEEEEE-echhh-cCCCchh
Confidence 36799999999999999999999999999875 876554 89999 9999999888 79997 9999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHhhhc
Q 008235 501 YEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDLCHT 568 (573)
Q Consensus 501 v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~~ 568 (573)
|+||+|||+|.+++.|+||+|||||+|+.|.+++|++.+|..++..|+++|++++|+||++|..||..
T Consensus 534 iTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAer 601 (629)
T KOG0336|consen 534 ITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAER 601 (629)
T ss_pred cceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999853
No 4
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-74 Score=565.41 Aligned_cols=360 Identities=17% Similarity=0.184 Sum_probs=328.5
Q ss_pred CccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhch
Q 008235 168 ACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARK 247 (573)
Q Consensus 168 ~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~ 247 (573)
+|.++++.+.+ .+++...||..| |+||+++||.++.|+|||+.|.|| ||||.||+||++++|+..+
T Consensus 62 sf~dLgv~~~L--------~~ac~~l~~~~P-----T~IQ~~aiP~~L~g~dvIglAeTG-SGKT~afaLPIl~~LL~~p 127 (476)
T KOG0330|consen 62 SFADLGVHPEL--------LEACQELGWKKP-----TKIQSEAIPVALGGRDVIGLAETG-SGKTGAFALPILQRLLQEP 127 (476)
T ss_pred chhhcCcCHHH--------HHHHHHhCcCCC-----chhhhhhcchhhCCCcEEEEeccC-CCchhhhHHHHHHHHHcCC
Confidence 35555555544 566777899999 999999999999999999999999 9999999999999999865
Q ss_pred hccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHc-CC
Q 008235 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL-KA 325 (573)
Q Consensus 248 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~-~~ 325 (573)
..+++|||+||||||.||.+++..| ...|++++++.||.+...|...|.+ .|+|||||||||++|+.+ +.
T Consensus 128 -------~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~k-kPhilVaTPGrL~dhl~~Tkg 199 (476)
T KOG0330|consen 128 -------KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSK-KPHILVATPGRLWDHLENTKG 199 (476)
T ss_pred -------CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhc-CCCEEEeCcHHHHHHHHhccC
Confidence 4689999999999999999999999 4469999999999999999999998 899999999999999995 78
Q ss_pred CCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEE
Q 008235 326 IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQ 402 (573)
Q Consensus 326 ~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~ 402 (573)
+++.++++||+||||++++ .+.+..|+..+|..+|+++||||||..+..+.+..+.+|+ .+.+... ..+.+.+.|
T Consensus 200 f~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~-~v~~s~k-y~tv~~lkQ 277 (476)
T KOG0330|consen 200 FSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPV-KVAVSSK-YQTVDHLKQ 277 (476)
T ss_pred ccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCe-EEeccch-hcchHHhhh
Confidence 9999999999999999999 8899999999999999999999999999999999999997 6666654 578889999
Q ss_pred EEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHH-----HHHHHHh
Q 008235 403 SVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSH-----IKNSVEA 477 (573)
Q Consensus 403 ~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~-----~l~~F~~ 477 (573)
.|.+++ ...|..+|.++|+... +..+||||+++..++.++-.|+..|+.+..+ ||+|.| +++.| +
T Consensus 278 ~ylfv~-~k~K~~yLV~ll~e~~-------g~s~iVF~~t~~tt~~la~~L~~lg~~a~~L-hGqmsq~~Rlg~l~~F-k 347 (476)
T KOG0330|consen 278 TYLFVP-GKDKDTYLVYLLNELA-------GNSVIVFCNTCNTTRFLALLLRNLGFQAIPL-HGQMSQSKRLGALNKF-K 347 (476)
T ss_pred heEecc-ccccchhHHHHHHhhc-------CCcEEEEEeccchHHHHHHHHHhcCcceecc-cchhhHHHHHHHHHHH-h
Confidence 999997 6789999999998753 5799999999999999999999999999985 999887 69999 9
Q ss_pred cCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCCC
Q 008235 478 DGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQV 557 (573)
Q Consensus 478 ~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~ 557 (573)
+|...++++ +|+++ ||||||.|++|||||+|.+..+||||+|||||+|++|.+|+|++..|...+.+|+..+.....+
T Consensus 348 ~~~r~iLv~-TDVaS-RGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 348 AGARSILVC-TDVAS-RGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred ccCCcEEEe-cchhc-ccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 999999988 79996 9999999999999999999999999999999999999999999999999999999999887654
Q ss_pred --CCHHHH
Q 008235 558 --VPDALR 563 (573)
Q Consensus 558 --vp~~l~ 563 (573)
++++..
T Consensus 426 ~~~~~~~~ 433 (476)
T KOG0330|consen 426 YKVDKNEV 433 (476)
T ss_pred cCcchHHH
Confidence 666443
No 5
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-71 Score=554.07 Aligned_cols=349 Identities=16% Similarity=0.189 Sum_probs=317.6
Q ss_pred HHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcE
Q 008235 179 LILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPF 258 (573)
Q Consensus 179 ~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ 258 (573)
.+.++..|.+++..+||..| ||||..+||..+.|+|+++||.|| ||||.||+||+|++++-.|... ...+
T Consensus 185 ~mNLSRPlLka~~~lGy~~P-----TpIQ~a~IPvallgkDIca~A~TG-sGKTAAF~lPiLERLlYrPk~~----~~TR 254 (691)
T KOG0338|consen 185 SMNLSRPLLKACSTLGYKKP-----TPIQVATIPVALLGKDICACAATG-SGKTAAFALPILERLLYRPKKV----AATR 254 (691)
T ss_pred hcccchHHHHHHHhcCCCCC-----CchhhhcccHHhhcchhhheeccc-CCchhhhHHHHHHHHhcCcccC----ccee
Confidence 33467788889999999999 999999999999999999999999 9999999999999998776442 4779
Q ss_pred EEEEcccHHHHHHHHHHHhhhhcC-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC-CCCCCCccEEEE
Q 008235 259 LLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK-AIDVSGVSLLVV 336 (573)
Q Consensus 259 ~Lil~PtreLa~Qi~~~~~~l~~~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~-~~~l~~l~~lVi 336 (573)
+||||||||||.|++.+.+.|+.+ .|.++.++||.+...|...|++ +|||||||||||.|||.+. .++++++..||+
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs-~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvl 333 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS-RPDIVIATPGRLIDHLRNSPSFNLDSIEVLVL 333 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh-CCCEEEecchhHHHHhccCCCccccceeEEEe
Confidence 999999999999999999999776 8999999999999999999999 8999999999999999984 589999999999
Q ss_pred eCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcC--Chh
Q 008235 337 DRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCA--SDE 411 (573)
Q Consensus 337 DEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~--~~~ 411 (573)
||||+||+ .++|..|+..|+.++|+++|||||+..+.+++...|+.|+ .|.+++. ..+...+.|.|+.+. .+.
T Consensus 334 DEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPv-rifvd~~-~~~a~~LtQEFiRIR~~re~ 411 (691)
T KOG0338|consen 334 DEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPV-RIFVDPN-KDTAPKLTQEFIRIRPKREG 411 (691)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCe-EEEeCCc-cccchhhhHHHheecccccc
Confidence 99999999 8999999999999999999999999999999999999998 8888876 356677888887653 244
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHH-----HHHHHHhcCCCCCeEE
Q 008235 412 EKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSH-----IKNSVEADGRKRPAVS 486 (573)
Q Consensus 412 ~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~-----~l~~F~~~g~~~~l~~ 486 (573)
.+...|..++...+. .++|||+.|+..|++|.-+|-..|+.+.- +||+..| .++.| +++...+|++
T Consensus 412 dRea~l~~l~~rtf~-------~~~ivFv~tKk~AHRl~IllGLlgl~agE-lHGsLtQ~QRlesL~kF-k~~eidvLia 482 (691)
T KOG0338|consen 412 DREAMLASLITRTFQ-------DRTIVFVRTKKQAHRLRILLGLLGLKAGE-LHGSLTQEQRLESLEKF-KKEEIDVLIA 482 (691)
T ss_pred ccHHHHHHHHHHhcc-------cceEEEEehHHHHHHHHHHHHHhhchhhh-hcccccHHHHHHHHHHH-HhccCCEEEE
Confidence 577777888877763 58899999999999999999999999986 5887665 69999 9999999888
Q ss_pred EEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHH
Q 008235 487 MIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEIL 551 (573)
Q Consensus 487 lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l 551 (573)
+|+++ |||||++|..||||++|.+++.|+||+|||+|+|+.|.+++|+..+|...++.+.+.-
T Consensus 483 -TDvAs-RGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 483 -TDVAS-RGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred -echhh-ccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 79995 9999999999999999999999999999999999999999999999999999988763
No 6
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.3e-68 Score=582.18 Aligned_cols=416 Identities=19% Similarity=0.264 Sum_probs=361.1
Q ss_pred hhcCccccccccccccccccccc-----ccccceEE-ccCCCCCCCCCCCccccCCChHHHHHhHHHHHHHHHhCCCccC
Q 008235 125 INLKNSQDKSLLFIDGVEKRTGN-----VERAEVHL-NGKSCANGHHGQACEKLDCPSKFLILCLNAIENAMRHDGVEQD 198 (573)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~k~~~-----~~~~~i~~-~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p 198 (573)
.++.++++++|...+.+...+.. +...+|.+ .|.++|.| ..+|++.++|+.+ + +++...||..|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p--~~~f~~~~l~~~l----~----~~l~~~g~~~p 153 (545)
T PTZ00110 84 INLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKP--VVSFEYTSFPDYI----L----KSLKNAGFTEP 153 (545)
T ss_pred ccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcc--cCCHhhcCCCHHH----H----HHHHHCCCCCC
Confidence 35678888888887777665433 44556665 68888766 6678888777766 4 44567899999
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 199 NPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 199 ~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
||||.++||.+++|+|+|++|||| ||||++|+||++.++...+... ...+|.+|||+||||||.|+++.+..
T Consensus 154 -----t~iQ~~aip~~l~G~dvI~~ApTG-SGKTlaylLP~l~~i~~~~~~~--~~~gp~~LIL~PTreLa~Qi~~~~~~ 225 (545)
T PTZ00110 154 -----TPIQVQGWPIALSGRDMIGIAETG-SGKTLAFLLPAIVHINAQPLLR--YGDGPIVLVLAPTRELAEQIREQCNK 225 (545)
T ss_pred -----CHHHHHHHHHHhcCCCEEEEeCCC-ChHHHHHHHHHHHHHHhccccc--CCCCcEEEEECChHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999987653221 12589999999999999999999999
Q ss_pred hhc-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHh
Q 008235 279 LKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQS 354 (573)
Q Consensus 279 l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~ 354 (573)
|.. .++++++++||.+...+...+.. +++|||+||++|++++..+...++++++|||||||+|++ ..++..|+..
T Consensus 226 ~~~~~~i~~~~~~gg~~~~~q~~~l~~-~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~ 304 (545)
T PTZ00110 226 FGASSKIRNTVAYGGVPKRGQIYALRR-GVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQ 304 (545)
T ss_pred HhcccCccEEEEeCCCCHHHHHHHHHc-CCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHh
Confidence 844 58999999999999999888988 899999999999999999989999999999999999998 7789999999
Q ss_pred cCCCCcEEEEeccCCccHHHHHHHHhc-CCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCC
Q 008235 355 ISGKPHTVVFNDCLTYTSVPAVQNLLL-GSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEP 433 (573)
Q Consensus 355 l~~~~q~l~~SAT~~~~~~~~~~~~l~-~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~ 433 (573)
+++++|+++||||+|..+..+++.++. .|+ .+.++........++.|.+..+. ...|...|..+|..+... .
T Consensus 305 ~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v-~i~vg~~~l~~~~~i~q~~~~~~-~~~k~~~L~~ll~~~~~~-----~ 377 (545)
T PTZ00110 305 IRPDRQTLMWSATWPKEVQSLARDLCKEEPV-HVNVGSLDLTACHNIKQEVFVVE-EHEKRGKLKMLLQRIMRD-----G 377 (545)
T ss_pred CCCCCeEEEEEeCCCHHHHHHHHHHhccCCE-EEEECCCccccCCCeeEEEEEEe-chhHHHHHHHHHHHhccc-----C
Confidence 999999999999999999999999886 464 67766544455678899888886 577888888888876542 5
Q ss_pred CcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCC
Q 008235 434 LKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPD 508 (573)
Q Consensus 434 ~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d 508 (573)
.++||||+|+..|+.|+..|...|+.+.. +||+ |.++++.| ++|+..+|++ ||+++ ||||||+|++|||||
T Consensus 378 ~k~LIF~~t~~~a~~l~~~L~~~g~~~~~-ihg~~~~~eR~~il~~F-~~G~~~ILVa-Tdv~~-rGIDi~~v~~VI~~d 453 (545)
T PTZ00110 378 DKILIFVETKKGADFLTKELRLDGWPALC-IHGDKKQEERTWVLNEF-KTGKSPIMIA-TDVAS-RGLDVKDVKYVINFD 453 (545)
T ss_pred CeEEEEecChHHHHHHHHHHHHcCCcEEE-EECCCcHHHHHHHHHHH-hcCCCcEEEE-cchhh-cCCCcccCCEEEEeC
Confidence 69999999999999999999999999886 4775 44589999 9999999888 68884 999999999999999
Q ss_pred CCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHhhhcCC
Q 008235 509 FIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDLCHTSP 570 (573)
Q Consensus 509 ~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~~~~ 570 (573)
+|.++++|+||+|||||+|+.|.|++|+++.+...+..|+++|+.++|+||++|.+|+..+.
T Consensus 454 ~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~ 515 (545)
T PTZ00110 454 FPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERS 515 (545)
T ss_pred CCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999997654
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.2e-69 Score=545.38 Aligned_cols=388 Identities=18% Similarity=0.239 Sum_probs=347.4
Q ss_pred ccccceEEccCCCCCCCCCCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCC
Q 008235 148 VERAEVHLNGKSCANGHHGQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSS 227 (573)
Q Consensus 148 ~~~~~i~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG 227 (573)
++.-.|.+.|..+|.| ..+|++.+||.++ +.. +...||..| ||||.+|||..++.+|+|++|.||
T Consensus 228 redynis~kg~~lpnp--lrnwEE~~~P~e~----l~~----I~~~~y~ep-----tpIqR~aipl~lQ~rD~igvaETg 292 (673)
T KOG0333|consen 228 REDYNISIKGGRLPNP--LRNWEESGFPLEL----LSV----IKKPGYKEP-----TPIQRQAIPLGLQNRDPIGVAETG 292 (673)
T ss_pred ecceeeeecCCCCCcc--ccChhhcCCCHHH----HHH----HHhcCCCCC-----chHHHhhccchhccCCeeeEEecc
Confidence 6678899999999988 7789999999988 443 456799999 999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhchhccC--CCCCCcEEEEEcccHHHHHHHHHHHhhh-hcCCcEEEEeCCCCCHHHHHHHhhc
Q 008235 228 STIVQIAWIVATAADSIARKEKEG--FSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS 304 (573)
Q Consensus 228 ~SGKTlaf~lp~l~~l~~~~~~~~--~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~~i~~~~~~gg~~~~~~~~~l~~ 304 (573)
||||+||++|++..+...++... ..-.||.++||+||||||+||.+...+| ..+|++++.++||.+.++|--.|..
T Consensus 293 -sGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~ 371 (673)
T KOG0333|consen 293 -SGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM 371 (673)
T ss_pred -CCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc
Confidence 99999999999999988774322 2346999999999999999999999998 5569999999999999999888888
Q ss_pred CCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcCC------------------------
Q 008235 305 CEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISG------------------------ 357 (573)
Q Consensus 305 ~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~------------------------ 357 (573)
+|+|+|||||||++.|.+..+.++++.+||+||||+|+| .+++..|+..+|.
T Consensus 372 -gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k 450 (673)
T KOG0333|consen 372 -GCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSK 450 (673)
T ss_pred -cceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhccccc
Confidence 899999999999999999999999999999999999999 8999999999861
Q ss_pred -CCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcE
Q 008235 358 -KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKV 436 (573)
Q Consensus 358 -~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~ 436 (573)
-+|+++||||+|+.+..+++.||.+|+ ++.++.. ..+.+.++|.++.+. ++.|+..|.++|...+ .+++
T Consensus 451 ~yrqT~mftatm~p~verlar~ylr~pv-~vtig~~-gk~~~rveQ~v~m~~-ed~k~kkL~eil~~~~-------~ppi 520 (673)
T KOG0333|consen 451 KYRQTVMFTATMPPAVERLARSYLRRPV-VVTIGSA-GKPTPRVEQKVEMVS-EDEKRKKLIEILESNF-------DPPI 520 (673)
T ss_pred ceeEEEEEecCCChHHHHHHHHHhhCCe-EEEeccC-CCCccchheEEEEec-chHHHHHHHHHHHhCC-------CCCE
Confidence 179999999999999999999999997 8888865 567788999999996 6778988888888762 5799
Q ss_pred EEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCC
Q 008235 437 LYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFII 511 (573)
Q Consensus 437 lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~ 511 (573)
|||+|+++.|+.|+..|...|+.+..+ ||. +..+|..| ++|...++++ +|++ +||||||+|.+|||||++.
T Consensus 521 IIFvN~kk~~d~lAk~LeK~g~~~~tl-Hg~k~qeQRe~aL~~f-r~~t~dIlVa-TDvA-gRGIDIpnVSlVinydmak 596 (673)
T KOG0333|consen 521 IIFVNTKKGADALAKILEKAGYKVTTL-HGGKSQEQRENALADF-REGTGDILVA-TDVA-GRGIDIPNVSLVINYDMAK 596 (673)
T ss_pred EEEEechhhHHHHHHHHhhccceEEEe-eCCccHHHHHHHHHHH-HhcCCCEEEE-eccc-ccCCCCCccceeeecchhh
Confidence 999999999999999999999999986 553 33489999 9999999998 7999 5999999999999999999
Q ss_pred CHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHH-HcCCCCCHHHHHhh
Q 008235 512 SMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILE-QCGQVVPDALRDLC 566 (573)
Q Consensus 512 s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~-~~~~~vp~~l~~~~ 566 (573)
++++|+||+|||||+|+.|.+++|+++.|...+..|.+.|. .....+|+++....
T Consensus 597 sieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~ 652 (673)
T KOG0333|consen 597 SIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHP 652 (673)
T ss_pred hHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccCh
Confidence 99999999999999999999999999999998888888776 55667888776544
No 8
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-68 Score=575.03 Aligned_cols=357 Identities=19% Similarity=0.271 Sum_probs=315.8
Q ss_pred HHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE
Q 008235 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (573)
Q Consensus 183 ~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil 262 (573)
...+.+++.+.||..| ||||.++||.++.|+|++++|+|| ||||+||+||+|+++...... ..+.+|||
T Consensus 37 ~~~ll~~l~~~gf~~p-----t~IQ~~~IP~~l~g~Dvi~~A~TG-sGKT~Af~lP~l~~l~~~~~~-----~~~~aLil 105 (513)
T COG0513 37 SPELLQALKDLGFEEP-----TPIQLAAIPLILAGRDVLGQAQTG-TGKTAAFLLPLLQKILKSVER-----KYVSALIL 105 (513)
T ss_pred CHHHHHHHHHcCCCCC-----CHHHHHHHHHHhCCCCEEEECCCC-ChHHHHHHHHHHHHHhccccc-----CCCceEEE
Confidence 3444566677999999 999999999999999999999999 999999999999997643111 11129999
Q ss_pred cccHHHHHHHHHHHhhhhc-C-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcc
Q 008235 263 VSSQEKAAKVRSVCKPLKA-F-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (573)
Q Consensus 263 ~PtreLa~Qi~~~~~~l~~-~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad 340 (573)
+||||||.||++.+..++. . ++++++++||.+...|...|+. ++||||||||||+||+.++.++++++.+||+||||
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD 184 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD 184 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh
Confidence 9999999999999999944 4 7999999999999999999998 79999999999999999999999999999999999
Q ss_pred cccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCC-ccccccceEEEEEEcCChhHHHHH
Q 008235 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQS-VASQSACIIQSVNVCASDEEKILK 416 (573)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~-~~~~~~~i~~~~~~~~~~~~k~~~ 416 (573)
+|++ .+++..|+..++.++|+++||||+|..+..+++.++.+|. .+.+... ...+...|.|.++.+.+...|+..
T Consensus 185 rmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~-~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~ 263 (513)
T COG0513 185 RMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPV-EIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263 (513)
T ss_pred hhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCc-EEEEccccccccccCceEEEEEeCCHHHHHHH
Confidence 9999 9999999999999999999999999999999999999997 7777732 223788999999999865569977
Q ss_pred HHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHH-----HHHHHHHhcCCCCCeEEEEecc
Q 008235 417 GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVS-----HIKNSVEADGRKRPAVSMIDKD 491 (573)
Q Consensus 417 l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~-----~~l~~F~~~g~~~~l~~lvd~~ 491 (573)
|..++... . ..++||||+|+..|+.|+..|...|+.+.. +||++. ++++.| ++|+.++|++ +|++
T Consensus 264 L~~ll~~~----~---~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~-lhG~l~q~~R~~~l~~F-~~g~~~vLVa-TDva 333 (513)
T COG0513 264 LLKLLKDE----D---EGRVIVFVRTKRLVEELAESLRKRGFKVAA-LHGDLPQEERDRALEKF-KDGELRVLVA-TDVA 333 (513)
T ss_pred HHHHHhcC----C---CCeEEEEeCcHHHHHHHHHHHHHCCCeEEE-ecCCCCHHHHHHHHHHH-HcCCCCEEEE-echh
Confidence 77777653 2 457999999999999999999999999987 488754 489999 8999999988 7999
Q ss_pred ccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccc-cHHHHHHHHHHHHHc---CCCCCHHHH
Q 008235 492 HISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKD-DAAHAGQMIEILEQC---GQVVPDALR 563 (573)
Q Consensus 492 s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~-d~~~~~~l~~~l~~~---~~~vp~~l~ 563 (573)
+||||||+|++|||||+|.+.++|+||+|||||+|+.|.+++|+++. |...+..+++.+... ...+|....
T Consensus 334 -aRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~ 408 (513)
T COG0513 334 -ARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEP 408 (513)
T ss_pred -hccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchh
Confidence 69999999999999999999999999999999999999999999986 999999999998665 345665433
No 9
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=8.4e-69 Score=539.38 Aligned_cols=345 Identities=14% Similarity=0.115 Sum_probs=313.3
Q ss_pred HHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE
Q 008235 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (573)
Q Consensus 183 ~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil 262 (573)
...+.++++++||... |++|+.++|+++.|+|+++.|.|| ||||+||+||+++.+...++..+ .+..+|||
T Consensus 90 S~~t~kAi~~~GF~~M-----T~VQ~~ti~pll~gkDvl~~AKTG-tGKTlAFLiPaie~l~k~~~~~r---~~~~vlIi 160 (543)
T KOG0342|consen 90 SPLTLKAIKEMGFETM-----TPVQQKTIPPLLEGKDVLAAAKTG-TGKTLAFLLPAIELLRKLKFKPR---NGTGVLII 160 (543)
T ss_pred CHHHHHHHHhcCccch-----hHHHHhhcCccCCCccceeeeccC-CCceeeehhHHHHHHHhcccCCC---CCeeEEEe
Confidence 4455677888999999 999999999999999999999999 99999999999999999877765 68999999
Q ss_pred cccHHHHHHHHHHHhhh-hcC-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHc-CCCCCCCccEEEEeCc
Q 008235 263 VSSQEKAAKVRSVCKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL-KAIDVSGVSLLVVDRL 339 (573)
Q Consensus 263 ~PtreLa~Qi~~~~~~l-~~~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~-~~~~l~~l~~lViDEa 339 (573)
|||||||.|++.++++| ..+ ++.+..++||.........+.+ +++|+|||||||+|||++ +.+.++++++||+|||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k-~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVK-GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhc-cccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 99999999999999998 555 8999999999999999999999 999999999999999999 4466788999999999
Q ss_pred ccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcC-CceEEEcC-CCccccccceEEEEEEcCChhHHH
Q 008235 340 DSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLG-SINRLSLN-QSVASQSACIIQSVNVCASDEEKI 414 (573)
Q Consensus 340 d~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~-~~~~i~~~-~~~~~~~~~i~~~~~~~~~~~~k~ 414 (573)
|++++ +++++.|+..+|..+|+++||||+|..|+++++..|.. |+ ++.+. .....+...+.|.|+++++ +.++
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~-~v~~~d~~~~~The~l~Qgyvv~~~-~~~f 317 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPV-FVNVDDGGERETHERLEQGYVVAPS-DSRF 317 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCce-EeecCCCCCcchhhcccceEEeccc-cchH
Confidence 99999 89999999999999999999999999999999998876 65 67665 3456788899999999984 5668
Q ss_pred HHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHH-----HHHHHHhcCCCCCeEEEEe
Q 008235 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSH-----IKNSVEADGRKRPAVSMID 489 (573)
Q Consensus 415 ~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~-----~l~~F~~~g~~~~l~~lvd 489 (573)
..++.+|++... ..++||||+|+..+..++++|+...++|.. +||.+.| +..+| +..+..+|++ +|
T Consensus 318 ~ll~~~LKk~~~------~~KiiVF~sT~~~vk~~~~lL~~~dlpv~e-iHgk~~Q~kRT~~~~~F-~kaesgIL~c-TD 388 (543)
T KOG0342|consen 318 SLLYTFLKKNIK------RYKIIVFFSTCMSVKFHAELLNYIDLPVLE-IHGKQKQNKRTSTFFEF-CKAESGILVC-TD 388 (543)
T ss_pred HHHHHHHHHhcC------CceEEEEechhhHHHHHHHHHhhcCCchhh-hhcCCcccccchHHHHH-hhcccceEEe-cc
Confidence 888899888654 379999999999999999999999999986 5775544 79999 8888888877 79
Q ss_pred ccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHH
Q 008235 490 KDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIE 549 (573)
Q Consensus 490 ~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~ 549 (573)
|+ |||+|||+|+|||+||+|.+.++||||+|||||.|..|.+++|+.|+|..+++.|.+
T Consensus 389 Va-ARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 389 VA-ARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred hh-hccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 99 799999999999999999999999999999999999999999999999999998873
No 10
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.8e-70 Score=531.39 Aligned_cols=388 Identities=17% Similarity=0.266 Sum_probs=347.6
Q ss_pred ccccceEEccCCCCCCCCCCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCC
Q 008235 148 VERAEVHLNGKSCANGHHGQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSS 227 (573)
Q Consensus 148 ~~~~~i~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG 227 (573)
+....|.++|.+.|.| ..+|.++.||..+ + +.+++.|+.+| ||||.+.+|.+++|||+|++|-||
T Consensus 153 Rk~~~I~veGd~ipPP--IksF~eMKFP~~~----L----~~lk~KGI~~P-----TpIQvQGlPvvLsGRDmIGIAfTG 217 (610)
T KOG0341|consen 153 RKQLHILVEGDDIPPP--IKSFKEMKFPKPL----L----RGLKKKGIVHP-----TPIQVQGLPVVLSGRDMIGIAFTG 217 (610)
T ss_pred HHhheEEeeCCCCCCc--hhhhhhccCCHHH----H----HHHHhcCCCCC-----CceeecCcceEeecCceeeEEeec
Confidence 5578899999999988 7778888888776 4 44556899999 999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhchhc-cCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hc------CCcEEEEeCCCCCHHHHH
Q 008235 228 STIVQIAWIVATAADSIARKEK-EGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA------FGIHTVSLHPGAAIDHQI 299 (573)
Q Consensus 228 ~SGKTlaf~lp~l~~l~~~~~~-~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~------~~i~~~~~~gg~~~~~~~ 299 (573)
||||++|.||++...+.+... +-....||.+|||||+||||.|+++.+..+ .. ..++++.++||.+..+|.
T Consensus 218 -SGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql 296 (610)
T KOG0341|consen 218 -SGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQL 296 (610)
T ss_pred -CCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHH
Confidence 999999999999877665422 222347999999999999999999998876 21 258899999999999999
Q ss_pred HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHH
Q 008235 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAV 376 (573)
Q Consensus 300 ~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~ 376 (573)
..+++ |++|+|+|||||.|+|..+.+.|.-++||++||||+|+| .++++.|+..+...+|+++||||+|..++.++
T Consensus 297 ~~v~~-GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FA 375 (610)
T KOG0341|consen 297 DVVRR-GVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFA 375 (610)
T ss_pred HHHhc-CeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHH
Confidence 99999 899999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC
Q 008235 377 QNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK 456 (573)
Q Consensus 377 ~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~ 456 (573)
+..+..|+ .+.+++. .+++-++.|.+.++. .+.|+.+|++.|... .+++||||..+..++.+.++|...
T Consensus 376 kSALVKPv-tvNVGRA-GAAsldViQevEyVk-qEaKiVylLeCLQKT--------~PpVLIFaEkK~DVD~IhEYLLlK 444 (610)
T KOG0341|consen 376 KSALVKPV-TVNVGRA-GAASLDVIQEVEYVK-QEAKIVYLLECLQKT--------SPPVLIFAEKKADVDDIHEYLLLK 444 (610)
T ss_pred Hhhcccce-EEecccc-cccchhHHHHHHHHH-hhhhhhhHHHHhccC--------CCceEEEeccccChHHHHHHHHHc
Confidence 99999997 8999986 466667888888886 677888888877664 679999999999999999999999
Q ss_pred CCCeeeecCC-----CHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcce
Q 008235 457 GYSISTGSNC-----IVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGI 531 (573)
Q Consensus 457 g~~~~~~~~~-----~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~ 531 (573)
|+.++++ || +|...++.| +.|+..++++ +|++| .|||+|++.||||||+|..++.|+||+|||||.|+.|.
T Consensus 445 GVEavaI-HGGKDQedR~~ai~af-r~gkKDVLVA-TDVAS-KGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi 520 (610)
T KOG0341|consen 445 GVEAVAI-HGGKDQEDRHYAIEAF-RAGKKDVLVA-TDVAS-KGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI 520 (610)
T ss_pred cceeEEe-ecCcchhHHHHHHHHH-hcCCCceEEE-ecchh-ccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce
Confidence 9999985 55 355589999 9999999988 79997 99999999999999999999999999999999999999
Q ss_pred EEEEeccc-cHHHHHHHHHHHHHcCCCCCHHHHHhhh
Q 008235 532 LHSFFTKD-DAAHAGQMIEILEQCGQVVPDALRDLCH 567 (573)
Q Consensus 532 ~i~~~~~~-d~~~~~~l~~~l~~~~~~vp~~l~~~~~ 567 (573)
+.+|+... +...+-.|..+|.+++|+||+.|..|+-
T Consensus 521 ATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~ 557 (610)
T KOG0341|consen 521 ATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAG 557 (610)
T ss_pred eeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCC
Confidence 99999865 7788899999999999999999999874
No 11
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-68 Score=544.67 Aligned_cols=397 Identities=17% Similarity=0.240 Sum_probs=342.9
Q ss_pred cceEEccCCCCCCCCCCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchh
Q 008235 151 AEVHLNGKSCANGHHGQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTI 230 (573)
Q Consensus 151 ~~i~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SG 230 (573)
..+.+.|.++|.+.. .|.+.++++.+ ...+...++..| ||||+.+||.+..|+|+++||+|| ||
T Consensus 60 i~v~~~G~~~p~~i~--~f~~~~l~~~l--------~~ni~~~~~~~p-----tpvQk~sip~i~~Grdl~acAqTG-sG 123 (482)
T KOG0335|consen 60 IPVKVSGRDVPPHIP--TFDEAILGEAL--------AGNIKRSGYTKP-----TPVQKYSIPIISGGRDLMACAQTG-SG 123 (482)
T ss_pred eeeeccCCccCCCcc--cccccchhHHH--------hhccccccccCC-----CcceeeccceeecCCceEEEccCC-Cc
Confidence 345566777775422 44444444333 444566899999 999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHhchhccCCCC---CCcEEEEEcccHHHHHHHHHHHhhhhcC-CcEEEEeCCCCCHHHHHHHhhcCC
Q 008235 231 VQIAWIVATAADSIARKEKEGFSF---TGPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCE 306 (573)
Q Consensus 231 KTlaf~lp~l~~l~~~~~~~~~~~---~~~~~Lil~PtreLa~Qi~~~~~~l~~~-~i~~~~~~gg~~~~~~~~~l~~~~ 306 (573)
||.||++|++.+++.......... .+|++|||+||||||.|+++.++++.+. +++++.+|||.+...|.+.+.+ +
T Consensus 124 KT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~-g 202 (482)
T KOG0335|consen 124 KTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKR-G 202 (482)
T ss_pred chHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhcc-C
Confidence 999999999999988754322211 3599999999999999999999999664 9999999999999999999998 8
Q ss_pred CcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC----cchHHHHHHhcC----CCCcEEEEeccCCccHHHHHHH
Q 008235 307 PEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSIS----GKPHTVVFNDCLTYTSVPAVQN 378 (573)
Q Consensus 307 ~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~----~~~q~l~~SAT~~~~~~~~~~~ 378 (573)
|||+|||||||.+++..+.+.|.++++|||||||+|+| .++|+.|+..+. ..+|+++||||+|..+..++..
T Consensus 203 cdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~ 282 (482)
T KOG0335|consen 203 CDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAAD 282 (482)
T ss_pred ccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHH
Confidence 99999999999999999999999999999999999999 999999999885 4799999999999999999999
Q ss_pred HhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCC--CCCCCcEEEEecChhhHHHHHHHHHHC
Q 008235 379 LLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHF--HSEPLKVLYIVGKDSKFQNLVSTLKCK 456 (573)
Q Consensus 379 ~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~--~~~~~k~lIF~~s~~~~~~l~~~L~~~ 456 (573)
++.+.+..+.++.. ..+..++.|.+..|. +.+|...|+++|........ .....+++|||+|++.|..|+.+|...
T Consensus 283 fl~~~yi~laV~rv-g~~~~ni~q~i~~V~-~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~ 360 (482)
T KOG0335|consen 283 FLKDNYIFLAVGRV-GSTSENITQKILFVN-EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN 360 (482)
T ss_pred HhhccceEEEEeee-ccccccceeEeeeec-chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC
Confidence 99875447777764 577889999999997 67788888888876542211 022348999999999999999999999
Q ss_pred CCCeeeecCCCHH-----HHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcce
Q 008235 457 GYSISTGSNCIVS-----HIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGI 531 (573)
Q Consensus 457 g~~~~~~~~~~~~-----~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~ 531 (573)
++++.. +||++. +.++.| ++|+..++++ ++++ +||||||+|+||||||+|.++++|+||+|||||+|..|.
T Consensus 361 ~~~~~s-Ihg~~tq~er~~al~~F-r~g~~pvlVa-T~Va-aRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~ 436 (482)
T KOG0335|consen 361 GYPAKS-IHGDRTQIEREQALNDF-RNGKAPVLVA-TNVA-ARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGR 436 (482)
T ss_pred CCCcee-ecchhhhhHHHHHHHHh-hcCCcceEEE-ehhh-hcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCce
Confidence 999987 588654 479999 9999999888 6899 699999999999999999999999999999999999999
Q ss_pred EEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHhhhcCC
Q 008235 532 LHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDLCHTSP 570 (573)
Q Consensus 532 ~i~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~~~~ 570 (573)
++.|+...+....+.|.++|.+++|+||+||..++..+.
T Consensus 437 atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~~~~~~~ 475 (482)
T KOG0335|consen 437 ATSFFNEKNQNIAKALVEILTEANQEVPQWLSELSRERE 475 (482)
T ss_pred eEEEeccccchhHHHHHHHHHHhcccCcHHHHhhhhhcc
Confidence 999999999999999999999999999999999775543
No 12
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-70 Score=552.99 Aligned_cols=353 Identities=17% Similarity=0.173 Sum_probs=304.5
Q ss_pred HhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcC-CcEEEEeCCCchhHHHHHHHHHHHHHHhchh----ccCCCCC
Q 008235 181 LCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKE----KEGFSFT 255 (573)
Q Consensus 181 ~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~----~~~~~~~ 255 (573)
.++..|..+|..+||..| ||||+.++|++..| .||++.|.|| |||||||.|||++.+..... .......
T Consensus 187 ~lp~~iL~aL~~~gFs~P-----t~IQsl~lp~ai~gk~DIlGaAeTG-SGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k 260 (731)
T KOG0347|consen 187 FLPMEILRALSNLGFSRP-----TEIQSLVLPAAIRGKVDILGAAETG-SGKTLAFGIPIVERLLESSDDSQELSNTSAK 260 (731)
T ss_pred CCCHHHHHHHHhcCCCCC-----ccchhhcccHhhccchhcccccccC-CCceeeecchhhhhhhhccchHhhhhhHHhc
Confidence 356777888889999999 99999999999999 8999999999 99999999999996643321 0011112
Q ss_pred C--cEEEEEcccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCC---CCC
Q 008235 256 G--PFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI---DVS 329 (573)
Q Consensus 256 ~--~~~Lil~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~---~l~ 329 (573)
+ |.+||++||||||.||..++..+.. .+|++.+++||.+...|.+.|+. .|+|+||||||||.++..+.. +++
T Consensus 261 ~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~-~p~IVVATPGRlweli~e~n~~l~~~k 339 (731)
T KOG0347|consen 261 YVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ-RPDIVVATPGRLWELIEEDNTHLGNFK 339 (731)
T ss_pred cCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc-CCCEEEecchHHHHHHHhhhhhhhhhh
Confidence 3 4599999999999999999999855 49999999999999999999998 899999999999999988654 578
Q ss_pred CccEEEEeCcccccC---cchHHHHHHhcC-----CCCcEEEEeccCCcc---------------------HHHHHHH--
Q 008235 330 GVSLLVVDRLDSLSK---GDTLSLIRQSIS-----GKPHTVVFNDCLTYT---------------------SVPAVQN-- 378 (573)
Q Consensus 330 ~l~~lViDEad~ll~---~~~l~~Il~~l~-----~~~q~l~~SAT~~~~---------------------~~~~~~~-- 378 (573)
.++||||||||+|++ ++++..|+..+. ..+|+++||||++-. ++.+.+.
T Consensus 340 ~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig 419 (731)
T KOG0347|consen 340 KVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIG 419 (731)
T ss_pred hceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhC
Confidence 899999999999999 889999998885 568999999998732 1122222
Q ss_pred HhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCC
Q 008235 379 LLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458 (573)
Q Consensus 379 ~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~ 458 (573)
|...| .+|++.+. ..+...+....+.|+ ..+|..+|+++|..| ++++|||||+++++.+|+.+|+..++
T Consensus 420 ~~~kp-kiiD~t~q-~~ta~~l~Es~I~C~-~~eKD~ylyYfl~ry--------PGrTlVF~NsId~vKRLt~~L~~L~i 488 (731)
T KOG0347|consen 420 FRGKP-KIIDLTPQ-SATASTLTESLIECP-PLEKDLYLYYFLTRY--------PGRTLVFCNSIDCVKRLTVLLNNLDI 488 (731)
T ss_pred ccCCC-eeEecCcc-hhHHHHHHHHhhcCC-ccccceeEEEEEeec--------CCceEEEechHHHHHHHHHHHhhcCC
Confidence 12345 48888875 467778889999996 678988999999887 89999999999999999999999999
Q ss_pred CeeeecCCCHHH-----HHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEE
Q 008235 459 SISTGSNCIVSH-----IKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILH 533 (573)
Q Consensus 459 ~~~~~~~~~~~~-----~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i 533 (573)
+...+ |+.|.| .|++| ++....+|++ +||+ |||||||+|+|||||.+|++.+-||||+|||+|++..|.++
T Consensus 489 ~p~~L-HA~M~QKqRLknLEkF-~~~~~~VLia-TDVA-ARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsv 564 (731)
T KOG0347|consen 489 PPLPL-HASMIQKQRLKNLEKF-KQSPSGVLIA-TDVA-ARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSV 564 (731)
T ss_pred CCchh-hHHHHHHHHHHhHHHH-hcCCCeEEEe-ehhh-hccCCCCCcceEEEeecCCccceeEecccccccccCCCeEE
Confidence 99874 887665 69999 8888888877 7999 79999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHHHHHHcC
Q 008235 534 SFFTKDDAAHAGQMIEILEQCG 555 (573)
Q Consensus 534 ~~~~~~d~~~~~~l~~~l~~~~ 555 (573)
+|+.|.|+..+..|++.|+...
T Consensus 565 ml~~P~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 565 MLCGPQEVGPLKKLCKTLKKKE 586 (731)
T ss_pred EEeChHHhHHHHHHHHHHhhcc
Confidence 9999999999999999998653
No 13
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.6e-65 Score=554.51 Aligned_cols=415 Identities=17% Similarity=0.225 Sum_probs=350.3
Q ss_pred HHhhhcCccccccccccccccc-ccc-----cccccceEEccCCCCCCCCCCCccccCCChHHHHHhHHHHHHHHHhCCC
Q 008235 122 EKAINLKNSQDKSLLFIDGVEK-RTG-----NVERAEVHLNGKSCANGHHGQACEKLDCPSKFLILCLNAIENAMRHDGV 195 (573)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~-k~~-----~~~~~~i~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~ 195 (573)
.+++++++.++++|...++... .+. -++..+|.+.|..+|.| ..+|+.+++|+.+ ++ .+...||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~p--i~~f~~~~l~~~l----~~----~L~~~g~ 141 (518)
T PLN00206 72 PKPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPP--ILSFSSCGLPPKL----LL----NLETAGY 141 (518)
T ss_pred CchhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCch--hcCHHhCCCCHHH----HH----HHHHcCC
Confidence 3456667777777776555433 111 15567889999888866 6678888877766 44 4566899
Q ss_pred ccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHH
Q 008235 196 EQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (573)
Q Consensus 196 ~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~ 275 (573)
..| ||||.++||.++.|+|++++|||| ||||++|++|++.++............++++|||+||||||.|+++.
T Consensus 142 ~~p-----tpiQ~~aip~il~g~dviv~ApTG-SGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~ 215 (518)
T PLN00206 142 EFP-----TPIQMQAIPAALSGRSLLVSADTG-SGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQ 215 (518)
T ss_pred CCC-----CHHHHHHHHHHhcCCCEEEEecCC-CCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHH
Confidence 999 999999999999999999999999 99999999999999875432211122589999999999999999999
Q ss_pred Hhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHH
Q 008235 276 CKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLI 351 (573)
Q Consensus 276 ~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~I 351 (573)
++.+. ..++++++++||.....+...+.. +++|+|+|||+|.+++..+.+.++++.+|||||||+|++ ..++..|
T Consensus 216 ~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~-~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i 294 (518)
T PLN00206 216 AKVLGKGLPFKTALVVGGDAMPQQLYRIQQ-GVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQI 294 (518)
T ss_pred HHHHhCCCCceEEEEECCcchHHHHHHhcC-CCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHH
Confidence 99984 458999999999999999888887 899999999999999999989999999999999999998 6778888
Q ss_pred HHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCC
Q 008235 352 RQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHS 431 (573)
Q Consensus 352 l~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~ 431 (573)
+..++ ++|+++||||++..+..++..++.++. .+.++.. ......+.|.+..+. ...|...|.++|......
T Consensus 295 ~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~-~i~~~~~-~~~~~~v~q~~~~~~-~~~k~~~l~~~l~~~~~~---- 366 (518)
T PLN00206 295 FQALS-QPQVLLFSATVSPEVEKFASSLAKDII-LISIGNP-NRPNKAVKQLAIWVE-TKQKKQKLFDILKSKQHF---- 366 (518)
T ss_pred HHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCE-EEEeCCC-CCCCcceeEEEEecc-chhHHHHHHHHHHhhccc----
Confidence 88874 689999999999999999999998886 6777654 345567888888886 566777777777654221
Q ss_pred CCCcEEEEecChhhHHHHHHHHHH-CCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEE
Q 008235 432 EPLKVLYIVGKDSKFQNLVSTLKC-KGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVI 505 (573)
Q Consensus 432 ~~~k~lIF~~s~~~~~~l~~~L~~-~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI 505 (573)
.+++||||+++..|+.|+..|.. .|+.+.. +||+ |..+++.| ++|+.++|++ ||++ +||||+|+|++||
T Consensus 367 -~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~-~Hg~~~~~eR~~il~~F-r~G~~~ILVa-Tdvl-~rGiDip~v~~VI 441 (518)
T PLN00206 367 -KPPAVVFVSSRLGADLLANAITVVTGLKALS-IHGEKSMKERREVMKSF-LVGEVPVIVA-TGVL-GRGVDLLRVRQVI 441 (518)
T ss_pred -CCCEEEEcCCchhHHHHHHHHhhccCcceEE-eeCCCCHHHHHHHHHHH-HCCCCCEEEE-ecHh-hccCCcccCCEEE
Confidence 35899999999999999999975 5888876 4765 44589999 9999999888 6888 4999999999999
Q ss_pred eCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHhh
Q 008235 506 VPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDLC 566 (573)
Q Consensus 506 ~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~ 566 (573)
|||+|.++++|+||+|||||+|..|.+++|++++|...+..|.++|+.+++.||++|..+.
T Consensus 442 ~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 442 IFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred EeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 9999999999999999999999999999999999999999999999999999999999876
No 14
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-66 Score=489.79 Aligned_cols=363 Identities=15% Similarity=0.194 Sum_probs=329.4
Q ss_pred CCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhc
Q 008235 167 QACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIAR 246 (573)
Q Consensus 167 ~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~ 246 (573)
..|+.+++..++ +..| +..||.+| +.||+.|||+++.|+||+++|..| +|||.+|.+.+++.+...
T Consensus 27 ~~F~~Mgl~edl----Lrgi----Y~yGfekP-----S~IQqrAi~~IlkGrdViaQaqSG-TGKTa~~si~vlq~~d~~ 92 (400)
T KOG0328|consen 27 PTFDDMGLKEDL----LRGI----YAYGFEKP-----SAIQQRAIPQILKGRDVIAQAQSG-TGKTATFSISVLQSLDIS 92 (400)
T ss_pred cchhhcCchHHH----HHHH----HHhccCCc-----hHHHhhhhhhhhcccceEEEecCC-CCceEEEEeeeeeecccc
Confidence 347777777776 5555 55799999 999999999999999999999999 999999999988766543
Q ss_pred hhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC
Q 008235 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA 325 (573)
Q Consensus 247 ~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~ 325 (573)
. +..++|||+||||||.|+.+++..|+. .++.+..+.||.+..+.++.+.. |.+++.+||||+++++.++.
T Consensus 93 ~-------r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~-G~hvVsGtPGrv~dmikr~~ 164 (400)
T KOG0328|consen 93 V-------RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDY-GQHVVSGTPGRVLDMIKRRS 164 (400)
T ss_pred c-------ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcc-cceEeeCCCchHHHHHHhcc
Confidence 2 467999999999999999999999955 59999999999999999999986 89999999999999999999
Q ss_pred CCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEE
Q 008235 326 IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQ 402 (573)
Q Consensus 326 ~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~ 402 (573)
+..+.+++||+||||.|++ .+++..|+..+|++.|++++|||+|.++.+....|+.+|+ .+.+.+. ..+...|+|
T Consensus 165 L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpv-rilvkrd-eltlEgIKq 242 (400)
T KOG0328|consen 165 LRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPV-RILVKRD-ELTLEGIKQ 242 (400)
T ss_pred ccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCce-eEEEecC-CCchhhhhh
Confidence 9999999999999999999 8899999999999999999999999999999999999997 6777664 367788999
Q ss_pred EEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHH-----HHHHHHh
Q 008235 403 SVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSH-----IKNSVEA 477 (573)
Q Consensus 403 ~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~-----~l~~F~~ 477 (573)
+|+.++.+++|+..|+++-..+. ..+++|||||+..++.|.+.++..++.+..+ ||++.| ++.+| +
T Consensus 243 f~v~ve~EewKfdtLcdLYd~Lt-------ItQavIFcnTk~kVdwLtekm~~~nftVssm-HGDm~qkERd~im~dF-R 313 (400)
T KOG0328|consen 243 FFVAVEKEEWKFDTLCDLYDTLT-------ITQAVIFCNTKRKVDWLTEKMREANFTVSSM-HGDMEQKERDKIMNDF-R 313 (400)
T ss_pred heeeechhhhhHhHHHHHhhhhe-------hheEEEEecccchhhHHHHHHHhhCceeeec-cCCcchhHHHHHHHHh-h
Confidence 99999988899988888776542 5789999999999999999999999999875 887654 89999 9
Q ss_pred cCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCCC
Q 008235 478 DGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQV 557 (573)
Q Consensus 478 ~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~ 557 (573)
.|..+++++ +|+- +||||+|.|++|||||+|.+.+.||||+||.||.|++|.++.|+..+|...++.+++.+.....+
T Consensus 314 sg~SrvLit-TDVw-aRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~e 391 (400)
T KOG0328|consen 314 SGKSRVLIT-TDVW-ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDE 391 (400)
T ss_pred cCCceEEEE-echh-hccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhccc
Confidence 999999877 6999 69999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCHHHHH
Q 008235 558 VPDALRD 564 (573)
Q Consensus 558 vp~~l~~ 564 (573)
.|-.+.+
T Consensus 392 mp~nvad 398 (400)
T KOG0328|consen 392 MPMNVAD 398 (400)
T ss_pred ccchhhh
Confidence 8876544
No 15
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-66 Score=526.50 Aligned_cols=340 Identities=16% Similarity=0.164 Sum_probs=305.2
Q ss_pred HHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc
Q 008235 184 NAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (573)
Q Consensus 184 ~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~ 263 (573)
....+.|++.+|..| |.||+.+||..+.|+|||+.|.|| |||||||++|+|++|....+... +|..+|||+
T Consensus 78 ~~t~kgLke~~fv~~-----teiQ~~~Ip~aL~G~DvlGAAkTG-SGKTLAFlvPvlE~L~r~kWs~~---DGlGalIIS 148 (758)
T KOG0343|consen 78 QKTLKGLKEAKFVKM-----TEIQRDTIPMALQGHDVLGAAKTG-SGKTLAFLVPVLEALYRLKWSPT---DGLGALIIS 148 (758)
T ss_pred hHHHHhHhhcCCccH-----HHHHHhhcchhccCcccccccccC-CCceeeehHHHHHHHHHcCCCCC---CCceeEEec
Confidence 345677788899999 999999999999999999999999 99999999999999998877655 799999999
Q ss_pred ccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC-CCCCCCccEEEEeCccc
Q 008235 264 SSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK-AIDVSGVSLLVVDRLDS 341 (573)
Q Consensus 264 PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~-~~~l~~l~~lViDEad~ 341 (573)
||||||.|+++++.+.+. +++.++.++||.+...+..++.. .+|||||||||++||... .++..++.+||+||||+
T Consensus 149 PTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~--mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR 226 (758)
T KOG0343|consen 149 PTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQ--MNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR 226 (758)
T ss_pred chHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhc--CCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH
Confidence 999999999999999955 59999999999999888888874 899999999999999874 47889999999999999
Q ss_pred ccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCC-CccccccceEEEEEEcCChhHHHHHH
Q 008235 342 LSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQ-SVASQSACIIQSVNVCASDEEKILKG 417 (573)
Q Consensus 342 ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~-~~~~~~~~i~~~~~~~~~~~~k~~~l 417 (573)
|++ ...+..|++.+|+.+|+++||||.+..+.++++..+.+|. +|.+.. ....++.++.|+|+.|+ ..+|+.+|
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~-~vsvhe~a~~atP~~L~Q~y~~v~-l~~Ki~~L 304 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPV-YVSVHENAVAATPSNLQQSYVIVP-LEDKIDML 304 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCc-EEEEeccccccChhhhhheEEEEe-hhhHHHHH
Confidence 999 8899999999999999999999999999999999999997 888884 33678899999999997 78999888
Q ss_pred HHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC--CCCeeeecCCCHHH-----HHHHHHhcCCCCCeEEEEec
Q 008235 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK--GYSISTGSNCIVSH-----IKNSVEADGRKRPAVSMIDK 490 (573)
Q Consensus 418 ~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~--g~~~~~~~~~~~~~-----~l~~F~~~g~~~~l~~lvd~ 490 (573)
+.+|...+ ..++|||++|++.|..+++.|+.. |++...+ ||.++| ++.+| -..+..++.+ +|+
T Consensus 305 ~sFI~shl-------k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L-~G~~~Q~~R~ev~~~F-~~~~~~vLF~-TDv 374 (758)
T KOG0343|consen 305 WSFIKSHL-------KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLAL-HGTMSQKKRIEVYKKF-VRKRAVVLFC-TDV 374 (758)
T ss_pred HHHHHhcc-------ccceEEEEehhhHHHHHHHHHHhcCCCCceeee-ccchhHHHHHHHHHHH-HHhcceEEEe-ehh
Confidence 88887765 479999999999999999999876 7888764 887766 68888 5566667666 699
Q ss_pred cccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEecccc-HHHHHHH
Q 008235 491 DHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDD-AAHAGQM 547 (573)
Q Consensus 491 ~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d-~~~~~~l 547 (573)
+ +||||+|.|+|||+||+|.++++||||+|||+|.+..|.|+++++|.+ ..++..|
T Consensus 375 ~-aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~L 431 (758)
T KOG0343|consen 375 A-ARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKL 431 (758)
T ss_pred h-hccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHH
Confidence 9 599999999999999999999999999999999999999999999998 4444444
No 16
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-65 Score=512.09 Aligned_cols=342 Identities=16% Similarity=0.194 Sum_probs=300.3
Q ss_pred HHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE
Q 008235 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (573)
Q Consensus 183 ~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil 262 (573)
+.+|..++...||... ||+|..+||.++.++||++.|+|| ||||+||++|+++.+......... ....+|||
T Consensus 14 ~~~l~~~l~~~GF~~m-----TpVQa~tIPlll~~KDVvveavTG-SGKTlAFllP~le~i~rr~~~~~~--~~vgalII 85 (567)
T KOG0345|consen 14 SPWLLEALDESGFEKM-----TPVQAATIPLLLKNKDVVVEAVTG-SGKTLAFLLPMLEIIYRREAKTPP--GQVGALII 85 (567)
T ss_pred cHHHHHHHHhcCCccc-----CHHHHhhhHHHhcCCceEEEcCCC-CCchhhHHHHHHHHHHhhccCCCc--cceeEEEe
Confidence 5556666777899998 999999999999999999999999 999999999999999665433221 24689999
Q ss_pred cccHHHHHHHHHHHhhh-hc-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC--CCCCCccEEEEeC
Q 008235 263 VSSQEKAAKVRSVCKPL-KA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA--IDVSGVSLLVVDR 338 (573)
Q Consensus 263 ~PtreLa~Qi~~~~~~l-~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~--~~l~~l~~lViDE 338 (573)
+||||||.||.+++..| .+ ..+.+.+++||.+..+.+..+++.+++|+|||||||.+++++.. ++++++.+||+||
T Consensus 86 sPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDE 165 (567)
T KOG0345|consen 86 SPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDE 165 (567)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecc
Confidence 99999999999999998 44 38999999999999999999988899999999999999999854 5566999999999
Q ss_pred cccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCc-cccccceEEEEEEcCChhHHH
Q 008235 339 LDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSV-ASQSACIIQSVNVCASDEEKI 414 (573)
Q Consensus 339 ad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~-~~~~~~i~~~~~~~~~~~~k~ 414 (573)
||++++ ...++.|++.+|..+++-+||||.+..+.++++..+++|+ .|.+.... ..++..+...|..|. ...|+
T Consensus 166 ADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv-~V~V~~k~~~~tPS~L~~~Y~v~~-a~eK~ 243 (567)
T KOG0345|consen 166 ADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPV-RVSVKEKSKSATPSSLALEYLVCE-ADEKL 243 (567)
T ss_pred hHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCce-eeeecccccccCchhhcceeeEec-HHHHH
Confidence 999999 8899999999999999999999999999999999999997 88887642 237778999999997 78999
Q ss_pred HHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC--CCCeeeecCCCHH-----HHHHHHHhcCCCCCeEEE
Q 008235 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK--GYSISTGSNCIVS-----HIKNSVEADGRKRPAVSM 487 (573)
Q Consensus 415 ~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~--g~~~~~~~~~~~~-----~~l~~F~~~g~~~~l~~l 487 (573)
..|+++|... ...++|||++|+.+++..+..|... ..+... +||.+. .+++.| ++...+++.+
T Consensus 244 ~~lv~~L~~~-------~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~-iHGK~~q~~R~k~~~~F-~~~~~~vl~~- 313 (567)
T KOG0345|consen 244 SQLVHLLNNN-------KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFS-IHGKMSQKARAKVLEAF-RKLSNGVLFC- 313 (567)
T ss_pred HHHHHHHhcc-------ccccEEEEecCcchHHHHHHHHHHHhCCCcEEE-ecchhcchhHHHHHHHH-HhccCceEEe-
Confidence 9998888773 2689999999999999999998775 445554 688654 479999 7777778766
Q ss_pred EeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHH
Q 008235 488 IDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAG 545 (573)
Q Consensus 488 vd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~ 545 (573)
+|++ |||||||+|+|||+||+|.++..|+||+|||||+|+.|.+|+|+.|+|..++.
T Consensus 314 TDVa-ARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 314 TDVA-ARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVE 370 (567)
T ss_pred ehhh-hccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHH
Confidence 6999 69999999999999999999999999999999999999999999998876655
No 17
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-65 Score=497.49 Aligned_cols=360 Identities=16% Similarity=0.149 Sum_probs=315.2
Q ss_pred CccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhch
Q 008235 168 ACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARK 247 (573)
Q Consensus 168 ~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~ 247 (573)
.|+..++.+|+ . +.++.+|...| ||||..|||.|+.|+|+|++|.|| ||||.||.+|+|+++...+
T Consensus 8 ~F~~LGl~~Wl----v----e~l~~l~i~~p-----TpiQ~~cIpkILeGrdcig~AkTG-sGKT~AFaLPil~rLsedP 73 (442)
T KOG0340|consen 8 PFSILGLSPWL----V----EQLKALGIKKP-----TPIQQACIPKILEGRDCIGCAKTG-SGKTAAFALPILNRLSEDP 73 (442)
T ss_pred chhhcCccHHH----H----HHHHHhcCCCC-----CchHhhhhHHHhcccccccccccC-CCcchhhhHHHHHhhccCC
Confidence 37777776666 3 44566899999 999999999999999999999999 9999999999999998876
Q ss_pred hccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC-
Q 008235 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA- 325 (573)
Q Consensus 248 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~- 325 (573)
.|..+||++||||||.|+.++|..++. .++++..++||++.-.|...|.. +|||||+|||||.+++..+.
T Consensus 74 -------~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~-rPHvVvatPGRlad~l~sn~~ 145 (442)
T KOG0340|consen 74 -------YGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSD-RPHVVVATPGRLADHLSSNLG 145 (442)
T ss_pred -------CcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhccc-CCCeEecCccccccccccCCc
Confidence 789999999999999999999999955 59999999999999999889988 89999999999999998762
Q ss_pred ---CCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCc-eEEEcCCCcccccc
Q 008235 326 ---IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSI-NRLSLNQSVASQSA 398 (573)
Q Consensus 326 ---~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~-~~i~~~~~~~~~~~ 398 (573)
..+.++++||+||||+|++ .+.++-|++.+|..+|+++||||++..+..+..--...+. ..+...+. ..+..
T Consensus 146 ~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~-vstve 224 (442)
T KOG0340|consen 146 VCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDG-VSTVE 224 (442)
T ss_pred cchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCC-CCchh
Confidence 4578999999999999999 7888999999999999999999999877665544444321 13344333 47788
Q ss_pred ceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHH-----HHH
Q 008235 399 CIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSH-----IKN 473 (573)
Q Consensus 399 ~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~-----~l~ 473 (573)
.+.|.|+.|+ ...|..+|+.+|..+-.. . ...++||+|+..+|+.|+..|...++.+..+ |+.+.| .+.
T Consensus 225 tL~q~yI~~~-~~vkdaYLv~~Lr~~~~~-~---~~simIFvnttr~cQ~l~~~l~~le~r~~~l-Hs~m~Q~eR~~aLs 298 (442)
T KOG0340|consen 225 TLYQGYILVS-IDVKDAYLVHLLRDFENK-E---NGSIMIFVNTTRECQLLSMTLKNLEVRVVSL-HSQMPQKERLAALS 298 (442)
T ss_pred hhhhheeecc-hhhhHHHHHHHHhhhhhc-c---CceEEEEeehhHHHHHHHHHHhhhceeeeeh-hhcchHHHHHHHHH
Confidence 9999999996 788999999999988664 3 5799999999999999999999999999985 776655 699
Q ss_pred HHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHH
Q 008235 474 SVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQ 553 (573)
Q Consensus 474 ~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~ 553 (573)
+| +++..+++++ +||++ ||||||.|++|||||+|+++.+||||+|||+|+|+.|.+++|+++.|...+..|++....
T Consensus 299 rF-rs~~~~ilia-TDVAs-RGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igk 375 (442)
T KOG0340|consen 299 RF-RSNAARILIA-TDVAS-RGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGK 375 (442)
T ss_pred HH-hhcCccEEEE-echhh-cCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhc
Confidence 99 9999999888 79996 999999999999999999999999999999999999999999999999999999998776
Q ss_pred cCCCCC
Q 008235 554 CGQVVP 559 (573)
Q Consensus 554 ~~~~vp 559 (573)
.-.+.+
T Consensus 376 Kl~e~~ 381 (442)
T KOG0340|consen 376 KLTEYN 381 (442)
T ss_pred cccccc
Confidence 544433
No 18
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-64 Score=508.10 Aligned_cols=360 Identities=16% Similarity=0.175 Sum_probs=307.8
Q ss_pred CCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHh
Q 008235 166 GQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIA 245 (573)
Q Consensus 166 ~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~ 245 (573)
...|...++.+.+ ...|... +++..| |.+|.++||.+++|+|++|.|+|| |||||||++|+++.|..
T Consensus 135 s~~f~~LGL~~~l----v~~L~~~---m~i~~p-----TsVQkq~IP~lL~grD~lV~aQTG-SGKTLAYllPiVq~Lq~ 201 (708)
T KOG0348|consen 135 SAAFASLGLHPHL----VSHLNTK---MKISAP-----TSVQKQAIPVLLEGRDALVRAQTG-SGKTLAYLLPIVQSLQA 201 (708)
T ss_pred cccchhcCCCHHH----HHHHHHH---hccCcc-----chHhhcchhhhhcCcceEEEcCCC-CcccHHHHHHHHHHHHh
Confidence 4457778888887 5555543 688899 999999999999999999999999 99999999999999988
Q ss_pred chhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHc
Q 008235 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL 323 (573)
Q Consensus 246 ~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~ 323 (573)
...+.. ...|+.+||||||||||.|+|+.+.+| ..+ .|-.+.+.||.....+..+|++ |++|||+|||||+|||.+
T Consensus 202 m~~ki~-Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRK-GiNILIgTPGRLvDHLkn 279 (708)
T KOG0348|consen 202 MEPKIQ-RSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRK-GINILIGTPGRLVDHLKN 279 (708)
T ss_pred cCcccc-ccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhc-CceEEEcCchHHHHHHhc
Confidence 765443 347999999999999999999999998 443 6777789999999999999999 899999999999999998
Q ss_pred -CCCCCCCccEEEEeCcccccC---cchHHHHHHhcC-------------CCCcEEEEeccCCccHHHHHHHHhcCCceE
Q 008235 324 -KAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSIS-------------GKPHTVVFNDCLTYTSVPAVQNLLLGSINR 386 (573)
Q Consensus 324 -~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~-------------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~ 386 (573)
..+.+++++|||+||||++++ ..++..|++.+. +..|.+++|||++..|..++..-|.+|+ +
T Consensus 280 T~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv-~ 358 (708)
T KOG0348|consen 280 TKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPV-Y 358 (708)
T ss_pred cchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCce-e
Confidence 568899999999999999999 788899888772 2478999999999999999999999997 7
Q ss_pred EEcCCC------------------------ccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecC
Q 008235 387 LSLNQS------------------------VASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGK 442 (573)
Q Consensus 387 i~~~~~------------------------~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s 442 (573)
|.++.. ....+..+.|.|.+++ ..-++..|..+|....+... ..++|||+++
T Consensus 359 I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVP-pKLRLV~Laa~L~~~~k~~~---~qk~iVF~S~ 434 (708)
T KOG0348|consen 359 ISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVP-PKLRLVALAALLLNKVKFEE---KQKMIVFFSC 434 (708)
T ss_pred eeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecC-CchhHHHHHHHHHHHhhhhh---hceeEEEEec
Confidence 773321 0234566788898887 56788899999998888766 6799999999
Q ss_pred hhhHHHHHHHHHHCC----------------------CCeeeecCCCHHH-----HHHHHHhcCCCCCeEEEEeccccCC
Q 008235 443 DSKFQNLVSTLKCKG----------------------YSISTGSNCIVSH-----IKNSVEADGRKRPAVSMIDKDHIST 495 (573)
Q Consensus 443 ~~~~~~l~~~L~~~g----------------------~~~~~~~~~~~~~-----~l~~F~~~g~~~~l~~lvd~~s~rG 495 (573)
.+.++..+.+|...- ..+.- +||.|+| +++.| ...+..++.+ +||+ +||
T Consensus 435 ~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~r-LHGsm~QeeRts~f~~F-s~~~~~VLLc-TDVA-aRG 510 (708)
T KOG0348|consen 435 SDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYR-LHGSMEQEERTSVFQEF-SHSRRAVLLC-TDVA-ARG 510 (708)
T ss_pred hhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEE-ecCchhHHHHHHHHHhh-ccccceEEEe-hhhh-hcc
Confidence 999999999987532 12223 5887766 68999 7777777766 6999 699
Q ss_pred CccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHH
Q 008235 496 AELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIE 549 (573)
Q Consensus 496 lDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~ 549 (573)
||+|+|++||+||+|.+..+|+||+|||+|+|..|.+++|+.|.|..+++.|..
T Consensus 511 LDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 511 LDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred CCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999987776654
No 19
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-64 Score=546.32 Aligned_cols=412 Identities=21% Similarity=0.322 Sum_probs=366.3
Q ss_pred hhcCccccccccccccccccccc-----ccccc-eEEccCCCCCCCCCCCccccCCChHHHHHhHHHHHHHHHhCCCccC
Q 008235 125 INLKNSQDKSLLFIDGVEKRTGN-----VERAE-VHLNGKSCANGHHGQACEKLDCPSKFLILCLNAIENAMRHDGVEQD 198 (573)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~k~~~-----~~~~~-i~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p 198 (573)
...+++.+++|.+...+...+.. +.... |.+.|.+||.| ..+|...++.+++ ++.+ +++||..|
T Consensus 319 ~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkp--v~sW~q~gl~~~i----l~tl----kkl~y~k~ 388 (997)
T KOG0334|consen 319 ISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKP--VTSWTQCGLSSKI----LETL----KKLGYEKP 388 (997)
T ss_pred ccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcc--cchHhhCCchHHH----HHHH----HHhcCCCC
Confidence 45678888999988887777543 23333 88999999977 6678888877777 4444 56799998
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 199 NPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 199 ~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
||||.+|||+|++|+|||++|.|| ||||++|+||++.++..++.... ++||.+||++||||||.||++.++.
T Consensus 389 -----~~IQ~qAiP~ImsGrdvIgvakTg-SGKT~af~LPmirhi~dQr~~~~--gdGPi~li~aPtrela~QI~r~~~k 460 (997)
T KOG0334|consen 389 -----TPIQAQAIPAIMSGRDVIGVAKTG-SGKTLAFLLPMIRHIKDQRPLEE--GDGPIALILAPTRELAMQIHREVRK 460 (997)
T ss_pred -----cchhhhhcchhccCcceEEeeccC-CccchhhhcchhhhhhcCCChhh--CCCceEEEEcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999 99999999999999888765543 3699999999999999999999999
Q ss_pred h-hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC---CCCCCccEEEEeCcccccC---cchHHHH
Q 008235 279 L-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA---IDVSGVSLLVVDRLDSLSK---GDTLSLI 351 (573)
Q Consensus 279 l-~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~---~~l~~l~~lViDEad~ll~---~~~l~~I 351 (573)
| ..++++++++|||.....|+..+++ +++|+||||||++|++..+. .+|.++.+||+||||+|++ .+++..|
T Consensus 461 f~k~l~ir~v~vygg~~~~~qiaelkR-g~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~I 539 (997)
T KOG0334|consen 461 FLKLLGIRVVCVYGGSGISQQIAELKR-GAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRI 539 (997)
T ss_pred HHhhcCceEEEecCCccHHHHHHHHhc-CCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchH
Confidence 8 4479999999999999999999999 69999999999999987654 4566777999999999999 8888889
Q ss_pred HHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCC
Q 008235 352 RQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHS 431 (573)
Q Consensus 352 l~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~ 431 (573)
++.+++++|+++||||+|..+..+++..+..|+. +.++.. ......+.|.+.+|..+.+|+..|.++|..+..
T Consensus 540 i~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pve-iiv~~~-svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e----- 612 (997)
T KOG0334|consen 540 LQNLRPDRQTVLFSATFPRSMEALARKVLKKPVE-IIVGGR-SVVCKEVTQVVRVCAIENEKFLKLLELLGERYE----- 612 (997)
T ss_pred HhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCee-EEEccc-eeEeccceEEEEEecCchHHHHHHHHHHHHHhh-----
Confidence 9999999999999999999999999999999984 555533 467789999999998899999999999999866
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEe
Q 008235 432 EPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIV 506 (573)
Q Consensus 432 ~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~ 506 (573)
..++||||.++..|..+...|...|+++.. +||. ++.+++.| +++..+++++ ++++ +||||++++.+|||
T Consensus 613 -~~~tiiFv~~qe~~d~l~~~L~~ag~~~~s-lHGgv~q~dR~sti~df-K~~~~~LLva-Tsvv-arGLdv~~l~Lvvn 687 (997)
T KOG0334|consen 613 -DGKTIIFVDKQEKADALLRDLQKAGYNCDS-LHGGVDQHDRSSTIEDF-KNGVVNLLVA-TSVV-ARGLDVKELILVVN 687 (997)
T ss_pred -cCCEEEEEcCchHHHHHHHHHHhcCcchhh-hcCCCchHHHHhHHHHH-hccCceEEEe-hhhh-hcccccccceEEEE
Confidence 579999999999999999999999999987 5764 55589999 9998888877 6777 69999999999999
Q ss_pred CCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHhhh
Q 008235 507 PDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDLCH 567 (573)
Q Consensus 507 ~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~ 567 (573)
||+|...++|+||+|||||+|++|.|++|++|.+..+...|++.|..+++++|..|..|..
T Consensus 688 yd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~ 748 (997)
T KOG0334|consen 688 YDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSE 748 (997)
T ss_pred cccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998873
No 20
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-64 Score=479.61 Aligned_cols=351 Identities=17% Similarity=0.215 Sum_probs=320.1
Q ss_pred HHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE
Q 008235 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (573)
Q Consensus 183 ~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil 262 (573)
-..+...+++.||..| +|||.++||.++.|+|+++.|..| +|||.||++|+|+.+.... ...+++|+
T Consensus 93 kr~LLmgIfe~G~ekP-----SPiQeesIPiaLtGrdiLaRaKNG-TGKT~a~~IP~Lekid~~~-------~~IQ~~il 159 (459)
T KOG0326|consen 93 KRELLMGIFEKGFEKP-----SPIQEESIPIALTGRDILARAKNG-TGKTAAYCIPVLEKIDPKK-------NVIQAIIL 159 (459)
T ss_pred hHHHHHHHHHhccCCC-----CCccccccceeecchhhhhhccCC-CCCccceechhhhhcCccc-------cceeEEEE
Confidence 3444556678999999 999999999999999999999999 9999999999999887553 57799999
Q ss_pred cccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCccc
Q 008235 263 VSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS 341 (573)
Q Consensus 263 ~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ 341 (573)
|||||||.|+...|..++. .++.+....||++..+.+-++.. .++++||||||++|++..+-..++++.+||+||||.
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~-~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQ-TVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK 238 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecC-ceEEEEcCChhHHHHHhcccccchhceEEEechhhh
Confidence 9999999999999999944 59999999999999999888888 899999999999999999999999999999999999
Q ss_pred ccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHH
Q 008235 342 LSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGI 418 (573)
Q Consensus 342 ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 418 (573)
|++ .+.++.++..+|+.+|+++||||+|-.+..+..++|.+|+ .|.+-.. .+...+.|+|.++. +.+|...|-
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy-~INLM~e--Ltl~GvtQyYafV~-e~qKvhCLn 314 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPY-EINLMEE--LTLKGVTQYYAFVE-ERQKVHCLN 314 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcc-eeehhhh--hhhcchhhheeeec-hhhhhhhHH
Confidence 999 8889999999999999999999999999999999999997 6766543 67788999999997 788987776
Q ss_pred HHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHH-----HHHHHHhcCCCCCeEEEEecccc
Q 008235 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSH-----IKNSVEADGRKRPAVSMIDKDHI 493 (573)
Q Consensus 419 ~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~-----~l~~F~~~g~~~~l~~lvd~~s~ 493 (573)
.++..+. ..+.||||||...++.|+..+...|+++.+ +|+.|.| ++..| ++|..+.+++ +|...
T Consensus 315 tLfskLq-------INQsIIFCNS~~rVELLAkKITelGyscyy-iHakM~Q~hRNrVFHdF-r~G~crnLVc-tDL~T- 383 (459)
T KOG0326|consen 315 TLFSKLQ-------INQSIIFCNSTNRVELLAKKITELGYSCYY-IHAKMAQEHRNRVFHDF-RNGKCRNLVC-TDLFT- 383 (459)
T ss_pred HHHHHhc-------ccceEEEeccchHhHHHHHHHHhccchhhH-HHHHHHHhhhhhhhhhh-hccccceeee-hhhhh-
Confidence 6666542 578999999999999999999999999986 5876554 89999 9999999887 68885
Q ss_pred CCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCCCCCHHH
Q 008235 494 STAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDAL 562 (573)
Q Consensus 494 rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~vp~~l 562 (573)
|||||+.|++|||||+|++.++|+||+||.||.|.-|.||.|++-+|...+..|++-|.....++|..+
T Consensus 384 RGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 384 RGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred cccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999765
No 21
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.2e-61 Score=513.49 Aligned_cols=360 Identities=15% Similarity=0.177 Sum_probs=309.7
Q ss_pred CCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhc
Q 008235 167 QACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIAR 246 (573)
Q Consensus 167 ~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~ 246 (573)
..|+++++++.+ .+++...||..| ||||.+|||.+++|+|++++|||| ||||++|++|+++.+...
T Consensus 8 ~~f~~~~l~~~l--------~~~l~~~g~~~p-----t~iQ~~aip~il~g~dvi~~ApTG-sGKTla~llp~l~~l~~~ 73 (423)
T PRK04837 8 QKFSDFALHPQV--------VEALEKKGFHNC-----TPIQALALPLTLAGRDVAGQAQTG-TGKTMAFLTATFHYLLSH 73 (423)
T ss_pred CCHhhCCCCHHH--------HHHHHHCCCCCC-----CHHHHHHHHHHhCCCcEEEECCCC-chHHHHHHHHHHHHHHhc
Confidence 346677776665 345567899999 999999999999999999999999 999999999999999865
Q ss_pred hhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC
Q 008235 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA 325 (573)
Q Consensus 247 ~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~ 325 (573)
+........++++|||+||||||.|+++++..+. ..++++..++||.+...+...+.. +++|||+||++|++++..+.
T Consensus 74 ~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~-~~~IlV~TP~~l~~~l~~~~ 152 (423)
T PRK04837 74 PAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLES-GVDILIGTTGRLIDYAKQNH 152 (423)
T ss_pred ccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcC-CCCEEEECHHHHHHHHHcCC
Confidence 4332222357899999999999999999999984 459999999999999888888887 89999999999999999999
Q ss_pred CCCCCccEEEEeCcccccC---cchHHHHHHhcCC--CCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccce
Q 008235 326 IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISG--KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACI 400 (573)
Q Consensus 326 ~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i 400 (573)
+.++++++|||||||+|++ ...+..|+..++. .+|+++||||++..+..++..++.+|. .+.+... ......+
T Consensus 153 ~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~-~i~v~~~-~~~~~~i 230 (423)
T PRK04837 153 INLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPE-YVEVEPE-QKTGHRI 230 (423)
T ss_pred cccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCE-EEEEcCC-CcCCCce
Confidence 9999999999999999998 6788888888874 577899999999999999999999996 6666543 2445667
Q ss_pred EEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHH
Q 008235 401 IQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSV 475 (573)
Q Consensus 401 ~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F 475 (573)
.+.+..+. ...|...|..++... . ..++||||+++..|+.++..|...|+.+..+ ||+ +..+++.|
T Consensus 231 ~~~~~~~~-~~~k~~~l~~ll~~~----~---~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~l-hg~~~~~~R~~~l~~F 301 (423)
T PRK04837 231 KEELFYPS-NEEKMRLLQTLIEEE----W---PDRAIIFANTKHRCEEIWGHLAADGHRVGLL-TGDVAQKKRLRILEEF 301 (423)
T ss_pred eEEEEeCC-HHHHHHHHHHHHHhc----C---CCeEEEEECCHHHHHHHHHHHHhCCCcEEEe-cCCCChhHHHHHHHHH
Confidence 77777764 677887777766542 2 5799999999999999999999999999864 765 45689999
Q ss_pred HhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcC
Q 008235 476 EADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCG 555 (573)
Q Consensus 476 ~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~ 555 (573)
++|+.++|++ ||++ +||||||+|++|||||+|.+.++|+||+|||||+|+.|.|++|+++.|...+..+.+.+....
T Consensus 302 -~~g~~~vLVa-Tdv~-~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~ 378 (423)
T PRK04837 302 -TRGDLDILVA-TDVA-ARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSI 378 (423)
T ss_pred -HcCCCcEEEE-echh-hcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCC
Confidence 9999999988 6898 499999999999999999999999999999999999999999999999999999888776553
No 22
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.4e-59 Score=505.21 Aligned_cols=349 Identities=16% Similarity=0.211 Sum_probs=307.0
Q ss_pred CccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhch
Q 008235 168 ACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARK 247 (573)
Q Consensus 168 ~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~ 247 (573)
+|+.+++++.+ .+++...||..| ||+|.+|||.++.|+|++++|||| ||||++|++|+++++....
T Consensus 5 ~f~~l~l~~~l--------~~~l~~~g~~~~-----t~iQ~~ai~~~l~g~dvi~~a~TG-sGKT~a~~lpil~~l~~~~ 70 (460)
T PRK11776 5 AFSTLPLPPAL--------LANLNELGYTEM-----TPIQAQSLPAILAGKDVIAQAKTG-SGKTAAFGLGLLQKLDVKR 70 (460)
T ss_pred ChhhcCCCHHH--------HHHHHHCCCCCC-----CHHHHHHHHHHhcCCCEEEECCCC-CcHHHHHHHHHHHHhhhcc
Confidence 36666666555 455667899999 999999999999999999999999 9999999999999885432
Q ss_pred hccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-C-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC
Q 008235 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-F-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA 325 (573)
Q Consensus 248 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~ 325 (573)
..+++|||+||||||.|+.+.++.+.. . ++++..++||.+...+...+.. +++|+|+|||+|.+++.++.
T Consensus 71 -------~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~-~~~IvV~Tp~rl~~~l~~~~ 142 (460)
T PRK11776 71 -------FRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEH-GAHIIVGTPGRILDHLRKGT 142 (460)
T ss_pred -------CCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcC-CCCEEEEChHHHHHHHHcCC
Confidence 367899999999999999999999843 2 7999999999999999988887 89999999999999999998
Q ss_pred CCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEE
Q 008235 326 IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQ 402 (573)
Q Consensus 326 ~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~ 402 (573)
+.++++++|||||||+|++ ...+..++..++..+|+++||||+|+.+..++..++.+|. .+.+... .....+.+
T Consensus 143 ~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~-~i~~~~~--~~~~~i~~ 219 (460)
T PRK11776 143 LDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPV-EVKVEST--HDLPAIEQ 219 (460)
T ss_pred ccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCE-EEEECcC--CCCCCeeE
Confidence 9999999999999999998 7789999999999999999999999999999999999996 6666543 23456889
Q ss_pred EEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHh
Q 008235 403 SVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEA 477 (573)
Q Consensus 403 ~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~ 477 (573)
.++.+. ...|...|..+|... . ..++||||+|+..|+.++..|...++.+..+ ||+ +.++++.| +
T Consensus 220 ~~~~~~-~~~k~~~l~~ll~~~----~---~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~-hg~~~~~eR~~~l~~F-~ 289 (460)
T PRK11776 220 RFYEVS-PDERLPALQRLLLHH----Q---PESCVVFCNTKKECQEVADALNAQGFSALAL-HGDLEQRDRDQVLVRF-A 289 (460)
T ss_pred EEEEeC-cHHHHHHHHHHHHhc----C---CCceEEEECCHHHHHHHHHHHHhCCCcEEEE-eCCCCHHHHHHHHHHH-H
Confidence 998887 456887777777543 2 5689999999999999999999999999864 774 45589999 9
Q ss_pred cCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHH
Q 008235 478 DGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQ 553 (573)
Q Consensus 478 ~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~ 553 (573)
+|..+++++ ||++ +||||+|+|++|||||+|.+.++|+||+|||||+|..|.|++|+++.|...+..+.+.+..
T Consensus 290 ~g~~~vLVa-Tdv~-~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 290 NRSCSVLVA-TDVA-ARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred cCCCcEEEE-eccc-ccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 999999888 6888 5999999999999999999999999999999999999999999999999999988887754
No 23
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.2e-59 Score=502.52 Aligned_cols=357 Identities=17% Similarity=0.216 Sum_probs=305.8
Q ss_pred ccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchh
Q 008235 169 CEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKE 248 (573)
Q Consensus 169 ~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~ 248 (573)
|+.+++++.+ .+++.+.||..| ||+|.++||.+++|+|+|++|||| ||||++|++|+++.+.....
T Consensus 3 f~~l~l~~~l--------~~~l~~~g~~~p-----t~iQ~~ai~~il~g~dvlv~apTG-sGKTla~~lpil~~l~~~~~ 68 (456)
T PRK10590 3 FDSLGLSPDI--------LRAVAEQGYREP-----TPIQQQAIPAVLEGRDLMASAQTG-TGKTAGFTLPLLQHLITRQP 68 (456)
T ss_pred HHHcCCCHHH--------HHHHHHCCCCCC-----CHHHHHHHHHHhCCCCEEEECCCC-CcHHHHHHHHHHHHhhhccc
Confidence 5555555554 555677899999 999999999999999999999999 99999999999999876432
Q ss_pred ccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCC
Q 008235 249 KEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327 (573)
Q Consensus 249 ~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~ 327 (573)
.. .....+++|||+||||||.|+.+.+..+ ...++++..++||.+...+...+.. +++|||+||++|++++....+.
T Consensus 69 ~~-~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~IiV~TP~rL~~~~~~~~~~ 146 (456)
T PRK10590 69 HA-KGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRG-GVDVLVATPGRLLDLEHQNAVK 146 (456)
T ss_pred cc-ccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcC-CCcEEEEChHHHHHHHHcCCcc
Confidence 11 1123568999999999999999999998 4458999999999999988888876 8999999999999999998889
Q ss_pred CCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEE
Q 008235 328 VSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSV 404 (573)
Q Consensus 328 l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~ 404 (573)
++++++|||||||+|++ ...+..++..++..+|+++||||++..+..++..++.+|. .+.+... ......+.+.+
T Consensus 147 l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~-~i~~~~~-~~~~~~i~~~~ 224 (456)
T PRK10590 147 LDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPL-EIEVARR-NTASEQVTQHV 224 (456)
T ss_pred cccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCe-EEEEecc-cccccceeEEE
Confidence 99999999999999998 6788899999999999999999999999999999999996 5555543 34456788888
Q ss_pred EEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcC
Q 008235 405 NVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADG 479 (573)
Q Consensus 405 ~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g 479 (573)
..++ ...+...|..++ .... ..++||||+++..|+.|+..|...++.+..+ ||+ +.++++.| ++|
T Consensus 225 ~~~~-~~~k~~~l~~l~----~~~~---~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~l-hg~~~~~~R~~~l~~F-~~g 294 (456)
T PRK10590 225 HFVD-KKRKRELLSQMI----GKGN---WQQVLVFTRTKHGANHLAEQLNKDGIRSAAI-HGNKSQGARTRALADF-KSG 294 (456)
T ss_pred EEcC-HHHHHHHHHHHH----HcCC---CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHHHHHHHHH-HcC
Confidence 8886 455665444444 3333 5799999999999999999999999999864 765 45589999 999
Q ss_pred CCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcC
Q 008235 480 RKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCG 555 (573)
Q Consensus 480 ~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~ 555 (573)
+..+|++ ||++ ++|||||+|++|||||+|.+.++|+||+|||||+|..|.|++|+++.|...++.+++.+....
T Consensus 295 ~~~iLVa-Tdv~-~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 295 DIRVLVA-TDIA-ARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred CCcEEEE-ccHH-hcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 9999888 6888 499999999999999999999999999999999999999999999999999999998876543
No 24
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.9e-59 Score=515.01 Aligned_cols=350 Identities=18% Similarity=0.222 Sum_probs=306.7
Q ss_pred ccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchh
Q 008235 169 CEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKE 248 (573)
Q Consensus 169 ~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~ 248 (573)
|.++++++.+ .+++.+.||..| ||||.++||.++.|+|+|++|||| ||||+||++|+++.+....
T Consensus 8 f~~l~L~~~l--------l~al~~~G~~~p-----tpiQ~~ai~~ll~g~dvl~~ApTG-sGKT~af~lpll~~l~~~~- 72 (629)
T PRK11634 8 FADLGLKAPI--------LEALNDLGYEKP-----SPIQAECIPHLLNGRDVLGMAQTG-SGKTAAFSLPLLHNLDPEL- 72 (629)
T ss_pred HhhcCCCHHH--------HHHHHHCCCCCC-----CHHHHHHHHHHHcCCCEEEEcCCC-CcHHHHHHHHHHHHhhhcc-
Confidence 5555555444 556677899999 999999999999999999999999 9999999999999886431
Q ss_pred ccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-C-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCC
Q 008235 249 KEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-F-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI 326 (573)
Q Consensus 249 ~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~ 326 (573)
.++++|||+||||||.|+++.+..|.. . ++.++.++||.++..+...+.. +++|||+||++|++++..+.+
T Consensus 73 ------~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~-~~~IVVgTPgrl~d~l~r~~l 145 (629)
T PRK11634 73 ------KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ-GPQIVVGTPGRLLDHLKRGTL 145 (629)
T ss_pred ------CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcC-CCCEEEECHHHHHHHHHcCCc
Confidence 468999999999999999999999843 3 8999999999999999888887 899999999999999999999
Q ss_pred CCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEE
Q 008235 327 DVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQS 403 (573)
Q Consensus 327 ~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~ 403 (573)
.++++.+|||||||+|++ ...+..|+..++..+|+++||||+|..+..++..|+.+|. .+.+... ......+.|.
T Consensus 146 ~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~-~i~i~~~-~~~~~~i~q~ 223 (629)
T PRK11634 146 DLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQ-EVRIQSS-VTTRPDISQS 223 (629)
T ss_pred chhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCe-EEEccCc-cccCCceEEE
Confidence 999999999999999998 6789999999999999999999999999999999999996 6666544 3455678888
Q ss_pred EEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCH-----HHHHHHHHhc
Q 008235 404 VNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIV-----SHIKNSVEAD 478 (573)
Q Consensus 404 ~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~-----~~~l~~F~~~ 478 (573)
++.+. ...|...|..+|... . ..++||||+|+..|+.|+..|...|+.+.. +||++ .++++.| ++
T Consensus 224 ~~~v~-~~~k~~~L~~~L~~~----~---~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~-lhgd~~q~~R~~il~~F-r~ 293 (629)
T PRK11634 224 YWTVW-GMRKNEALVRFLEAE----D---FDAAIIFVRTKNATLEVAEALERNGYNSAA-LNGDMNQALREQTLERL-KD 293 (629)
T ss_pred EEEec-hhhHHHHHHHHHHhc----C---CCCEEEEeccHHHHHHHHHHHHhCCCCEEE-eeCCCCHHHHHHHHHHH-hC
Confidence 88875 567777777666542 2 468999999999999999999999999886 47764 4589999 99
Q ss_pred CCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHc
Q 008235 479 GRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQC 554 (573)
Q Consensus 479 g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~ 554 (573)
|+..+|++ ||++ ++|||+|+|++|||||+|.++++|+||+|||||+|+.|.|++|+++.|...++.|.+.++..
T Consensus 294 G~~~ILVA-Tdv~-arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~ 367 (629)
T PRK11634 294 GRLDILIA-TDVA-ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 (629)
T ss_pred CCCCEEEE-cchH-hcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCC
Confidence 99999888 7898 59999999999999999999999999999999999999999999999998888887776544
No 25
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.1e-59 Score=508.73 Aligned_cols=359 Identities=16% Similarity=0.191 Sum_probs=305.2
Q ss_pred CccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhch
Q 008235 168 ACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARK 247 (573)
Q Consensus 168 ~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~ 247 (573)
+|+.+++++.+ .++|.+.||..| ||||.++||.++.|+|++++|||| ||||++|++|+++++...+
T Consensus 10 ~f~~l~l~~~l--------~~~L~~~g~~~p-----tpiQ~~~ip~~l~G~Dvi~~ApTG-SGKTlafllpil~~l~~~~ 75 (572)
T PRK04537 10 TFSSFDLHPAL--------LAGLESAGFTRC-----TPIQALTLPVALPGGDVAGQAQTG-TGKTLAFLVAVMNRLLSRP 75 (572)
T ss_pred ChhhcCCCHHH--------HHHHHHCCCCCC-----CHHHHHHHHHHhCCCCEEEEcCCC-CcHHHHHHHHHHHHHHhcc
Confidence 36556655544 455677899999 999999999999999999999999 9999999999999987643
Q ss_pred hccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC-C
Q 008235 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK-A 325 (573)
Q Consensus 248 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~-~ 325 (573)
........++++|||+||||||.|+++.+..|. ..++++..++||.+...+...+.. +++|||+||++|++++.+. .
T Consensus 76 ~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~-~~dIiV~TP~rL~~~l~~~~~ 154 (572)
T PRK04537 76 ALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ-GVDVIIATPGRLIDYVKQHKV 154 (572)
T ss_pred cccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC-CCCEEEECHHHHHHHHHhccc
Confidence 221111236899999999999999999999984 469999999999999988888877 7999999999999999875 5
Q ss_pred CCCCCccEEEEeCcccccC---cchHHHHHHhcCC--CCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccce
Q 008235 326 IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISG--KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACI 400 (573)
Q Consensus 326 ~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i 400 (573)
+.+..+++|||||||+|++ ...+..|+..++. .+|+++||||++..+..++..++..|. .+.+... ......+
T Consensus 155 ~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~-~i~v~~~-~~~~~~i 232 (572)
T PRK04537 155 VSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPE-KLVVETE-TITAARV 232 (572)
T ss_pred cchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCc-EEEeccc-cccccce
Confidence 7789999999999999998 6788889988876 789999999999999999999999885 4444432 2445678
Q ss_pred EEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHH
Q 008235 401 IQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSV 475 (573)
Q Consensus 401 ~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F 475 (573)
.|.++.+. ...|...|..++.. .. ..++||||+|+..|+.|+..|...++.+.. +||+ +..+++.|
T Consensus 233 ~q~~~~~~-~~~k~~~L~~ll~~----~~---~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~-lhg~l~~~eR~~il~~F 303 (572)
T PRK04537 233 RQRIYFPA-DEEKQTLLLGLLSR----SE---GARTMVFVNTKAFVERVARTLERHGYRVGV-LSGDVPQKKRESLLNRF 303 (572)
T ss_pred eEEEEecC-HHHHHHHHHHHHhc----cc---CCcEEEEeCCHHHHHHHHHHHHHcCCCEEE-EeCCCCHHHHHHHHHHH
Confidence 88888875 56677666666543 22 579999999999999999999999999986 4765 55689999
Q ss_pred HhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcC
Q 008235 476 EADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCG 555 (573)
Q Consensus 476 ~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~ 555 (573)
++|+.++|++ ||++ .+|||||+|++|||||+|.+.++|+||+|||||.|..|.|++|+++.+...+..|.+.+....
T Consensus 304 -r~G~~~VLVa-Tdv~-arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~ 380 (572)
T PRK04537 304 -QKGQLEILVA-TDVA-ARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKI 380 (572)
T ss_pred -HcCCCeEEEE-ehhh-hcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCC
Confidence 9999999888 7888 499999999999999999999999999999999999999999999999999999988776543
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-60 Score=468.95 Aligned_cols=361 Identities=19% Similarity=0.225 Sum_probs=312.9
Q ss_pred CCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhc
Q 008235 167 QACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIAR 246 (573)
Q Consensus 167 ~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~ 246 (573)
..|+++++.+.+ + +++.+.||.+| |-||+.|||.++.|+|+++.|.|| ||||+||+||+++.|+..
T Consensus 19 ktFe~~gLD~Rl----l----kAi~~lG~ekp-----TlIQs~aIplaLEgKDvvarArTG-SGKT~AYliPllqkll~~ 84 (569)
T KOG0346|consen 19 KTFEEFGLDSRL----L----KAITKLGWEKP-----TLIQSSAIPLALEGKDVVARARTG-SGKTAAYLIPLLQKLLAE 84 (569)
T ss_pred ccHHHhCCCHHH----H----HHHHHhCcCCc-----chhhhcccchhhcCcceeeeeccC-CCchHHHHHHHHHHHHHh
Confidence 458888888877 4 44566899999 999999999999999999999999 999999999999999987
Q ss_pred hhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcC---CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHc
Q 008235 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL 323 (573)
Q Consensus 247 ~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~---~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~ 323 (573)
.... ....+|.++||+||||||+|++.++.+|..+ .++++-+...++.......|.. .|+|+|+||++|+.++..
T Consensus 85 k~t~-~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d-~pdIvV~TP~~ll~~~~~ 162 (569)
T KOG0346|consen 85 KKTN-DGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMD-LPDIVVATPAKLLRHLAA 162 (569)
T ss_pred hhcc-cccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHcc-CCCeEEeChHHHHHHHhh
Confidence 6543 3347999999999999999999999998332 5676667666665555566766 799999999999999999
Q ss_pred CC-CCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccc
Q 008235 324 KA-IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSAC 399 (573)
Q Consensus 324 ~~-~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~ 399 (573)
+. ..+..+.+||+||||.|+. .+++..|...+|+..|.+++|||++.++..+-+.++++|+ .+.+...+......
T Consensus 163 ~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPv-iLkl~e~el~~~dq 241 (569)
T KOG0346|consen 163 GVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPV-ILKLTEGELPNPDQ 241 (569)
T ss_pred ccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCe-EEEeccccCCCccc
Confidence 87 7789999999999999998 8899999999999999999999999999999999999997 68887776667788
Q ss_pred eEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCH-----HHHHHH
Q 008235 400 IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIV-----SHIKNS 474 (573)
Q Consensus 400 i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~-----~~~l~~ 474 (573)
+.|+++.|. +++|+..++.+|+--+- .+++|||+||++.|-+|.-.|...|+....+ .+++ -.+++.
T Consensus 242 L~Qy~v~cs-e~DKflllyallKL~LI------~gKsliFVNtIdr~YrLkLfLeqFGiksciL-NseLP~NSR~Hii~Q 313 (569)
T KOG0346|consen 242 LTQYQVKCS-EEDKFLLLYALLKLRLI------RGKSLIFVNTIDRCYRLKLFLEQFGIKSCIL-NSELPANSRCHIIEQ 313 (569)
T ss_pred ceEEEEEec-cchhHHHHHHHHHHHHh------cCceEEEEechhhhHHHHHHHHHhCcHhhhh-cccccccchhhHHHH
Confidence 999999997 89999999888875433 4799999999999999999999999998754 6654 458999
Q ss_pred HHhcCCCCCeEEEEecc----------------------------------ccCCCccCCCCEEEeCCCCCCHHHHHHHH
Q 008235 475 VEADGRKRPAVSMIDKD----------------------------------HISTAELEEYEVVIVPDFIISMKNYVEIL 520 (573)
Q Consensus 475 F~~~g~~~~l~~lvd~~----------------------------------s~rGlDip~v~~VI~~d~P~s~~~YiqR~ 520 (573)
| ..|-..++++ +|.+ -+||||+.+|..|||||+|.++..||||+
T Consensus 314 F-NkG~YdivIA-tD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRv 391 (569)
T KOG0346|consen 314 F-NKGLYDIVIA-TDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRV 391 (569)
T ss_pred h-hCcceeEEEE-ccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhc
Confidence 9 7788888776 3310 13799999999999999999999999999
Q ss_pred hccccCCCcceEEEEeccccHHHHHHHHHHHHHc
Q 008235 521 TSMARHTVSGILHSFFTKDDAAHAGQMIEILEQC 554 (573)
Q Consensus 521 GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~ 554 (573)
|||||++++|.+++|+.|.+..-...|..++...
T Consensus 392 GRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~ 425 (569)
T KOG0346|consen 392 GRTARGNNKGTALSFVSPKEEFGKESLESILKDE 425 (569)
T ss_pred cccccCCCCCceEEEecchHHhhhhHHHHHHhhH
Confidence 9999999999999999999988778888877664
No 27
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.6e-58 Score=493.95 Aligned_cols=355 Identities=17% Similarity=0.209 Sum_probs=307.2
Q ss_pred ccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchh
Q 008235 169 CEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKE 248 (573)
Q Consensus 169 ~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~ 248 (573)
|+++++++.+ .+++...||..| |++|.++||.+++|+|++++|||| ||||++|++|+++++...+.
T Consensus 3 f~~l~l~~~l--------~~~l~~~g~~~p-----~~iQ~~ai~~~~~g~d~l~~apTG-sGKT~~~~lp~l~~l~~~~~ 68 (434)
T PRK11192 3 FSELELDESL--------LEALQDKGYTRP-----TAIQAEAIPPALDGRDVLGSAPTG-TGKTAAFLLPALQHLLDFPR 68 (434)
T ss_pred HhhcCCCHHH--------HHHHHHCCCCCC-----CHHHHHHHHHHhCCCCEEEECCCC-ChHHHHHHHHHHHHHhhccc
Confidence 5666666555 456677899999 999999999999999999999999 99999999999999976532
Q ss_pred ccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCC
Q 008235 249 KEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327 (573)
Q Consensus 249 ~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~ 327 (573)
.. ..++++|||+||+|||.|+++.+..+. ..++++..++||.....+...+.. +++|||+|||+|++++..+.+.
T Consensus 69 ~~---~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~-~~~IlV~Tp~rl~~~~~~~~~~ 144 (434)
T PRK11192 69 RK---SGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE-NQDIVVATPGRLLQYIKEENFD 144 (434)
T ss_pred cC---CCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcC-CCCEEEEChHHHHHHHHcCCcC
Confidence 22 136799999999999999999999984 458999999999999988888877 8999999999999999999899
Q ss_pred CCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCc-cHHHHHHHHhcCCceEEEcCCCccccccceEEE
Q 008235 328 VSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTY-TSVPAVQNLLLGSINRLSLNQSVASQSACIIQS 403 (573)
Q Consensus 328 l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~-~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~ 403 (573)
++++++|||||||+|++ ...+..|...++...|+++||||++. .+..++..++.+|+ .+.+... ......+.|.
T Consensus 145 ~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~-~i~~~~~-~~~~~~i~~~ 222 (434)
T PRK11192 145 CRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPV-EVEAEPS-RRERKKIHQW 222 (434)
T ss_pred cccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCE-EEEecCC-cccccCceEE
Confidence 99999999999999998 67888888888888999999999985 47888888888886 6666543 3455678898
Q ss_pred EEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCH-----HHHHHHHHhc
Q 008235 404 VNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIV-----SHIKNSVEAD 478 (573)
Q Consensus 404 ~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~-----~~~l~~F~~~ 478 (573)
++.++....|...|..++.. .. ..++||||+++..|+.++..|...++.+.. +||++ ..+++.| ++
T Consensus 223 ~~~~~~~~~k~~~l~~l~~~----~~---~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~-l~g~~~~~~R~~~l~~f-~~ 293 (434)
T PRK11192 223 YYRADDLEHKTALLCHLLKQ----PE---VTRSIVFVRTRERVHELAGWLRKAGINCCY-LEGEMVQAKRNEAIKRL-TD 293 (434)
T ss_pred EEEeCCHHHHHHHHHHHHhc----CC---CCeEEEEeCChHHHHHHHHHHHhCCCCEEE-ecCCCCHHHHHHHHHHH-hC
Confidence 88887667787666665543 22 579999999999999999999999999886 47754 4589999 99
Q ss_pred CCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHc
Q 008235 479 GRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQC 554 (573)
Q Consensus 479 g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~ 554 (573)
|...+|++ +|++ .+|||+|+|++|||||+|.+.+.|+||+|||||+|..|.+++|++..|...+..+.+++...
T Consensus 294 G~~~vLVa-Td~~-~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 294 GRVNVLVA-TDVA-ARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred CCCcEEEE-cccc-ccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 99999888 6888 49999999999999999999999999999999999999999999999999999998877643
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-57 Score=491.17 Aligned_cols=362 Identities=16% Similarity=0.179 Sum_probs=307.5
Q ss_pred HHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE
Q 008235 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (573)
Q Consensus 183 ~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil 262 (573)
.+.|.++|.+.||..| ||||.++|+.+++|+|+|++|||| ||||++|++|+++.+...+.........+++|||
T Consensus 95 ~~~l~~~l~~~g~~~~-----~~iQ~~ai~~~~~G~dvi~~apTG-SGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil 168 (475)
T PRK01297 95 APELMHAIHDLGFPYC-----TPIQAQVLGYTLAGHDAIGRAQTG-TGKTAAFLISIINQLLQTPPPKERYMGEPRALII 168 (475)
T ss_pred CHHHHHHHHHCCCCCC-----CHHHHHHHHHHhCCCCEEEECCCC-ChHHHHHHHHHHHHHHhcCcccccccCCceEEEE
Confidence 4445566677899999 999999999999999999999999 9999999999999998654222111236899999
Q ss_pred cccHHHHHHHHHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCccc
Q 008235 263 VSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS 341 (573)
Q Consensus 263 ~PtreLa~Qi~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ 341 (573)
+||+|||.|+++.++.|. ..++.+..++||.+...+...+....++|||+||++|++++..+...++++++|||||||+
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~ 248 (475)
T PRK01297 169 APTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADR 248 (475)
T ss_pred eCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHH
Confidence 999999999999999984 4589999999999998888888765799999999999999998888999999999999999
Q ss_pred ccC---cchHHHHHHhcCC--CCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHH
Q 008235 342 LSK---GDTLSLIRQSISG--KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILK 416 (573)
Q Consensus 342 ll~---~~~l~~Il~~l~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 416 (573)
+++ ...+..|+..++. ++|+++||||++..+..++..++.+|. .+.+... .....++.+.++.+. ..++...
T Consensus 249 l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~-~v~~~~~-~~~~~~~~~~~~~~~-~~~k~~~ 325 (475)
T PRK01297 249 MLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPA-IVEIEPE-NVASDTVEQHVYAVA-GSDKYKL 325 (475)
T ss_pred HHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCE-EEEeccC-cCCCCcccEEEEEec-chhHHHH
Confidence 998 5678888888864 679999999999999999999999996 5665543 344566778887776 4567766
Q ss_pred HHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEecc
Q 008235 417 GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKD 491 (573)
Q Consensus 417 l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~ 491 (573)
|..++.. .. ..++||||+++..|+.++..|...|+.+..+ ||+ |.++++.| ++|+..+|++ ||+.
T Consensus 326 l~~ll~~----~~---~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~-~g~~~~~~R~~~~~~F-r~G~~~vLva-T~~l 395 (475)
T PRK01297 326 LYNLVTQ----NP---WERVMVFANRKDEVRRIEERLVKDGINAAQL-SGDVPQHKRIKTLEGF-REGKIRVLVA-TDVA 395 (475)
T ss_pred HHHHHHh----cC---CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEE-ECCCCHHHHHHHHHHH-hCCCCcEEEE-cccc
Confidence 6666543 22 5699999999999999999999999998764 664 55689999 9999999888 6888
Q ss_pred ccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcC-CCC-CHHHHH
Q 008235 492 HISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCG-QVV-PDALRD 564 (573)
Q Consensus 492 s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~-~~v-p~~l~~ 564 (573)
+ +|||||+|++||+||+|.++.+|+||+||+||.|..|.+++|++++|...+..+.+++.... .++ |.+|++
T Consensus 396 ~-~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 396 G-RGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred c-cCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 4 99999999999999999999999999999999999999999999999999999999987764 454 445554
No 29
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-57 Score=466.75 Aligned_cols=394 Identities=17% Similarity=0.196 Sum_probs=330.9
Q ss_pred ccccceEEccCCCCCCCCCCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCC
Q 008235 148 VERAEVHLNGKSCANGHHGQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSS 227 (573)
Q Consensus 148 ~~~~~i~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG 227 (573)
|....+.+.|...|.+ ..+|........+ ...+.+.+...+|..| ||+|.+|+|.++.++|+++|||||
T Consensus 115 Rk~~k~~v~G~~~~~~--l~~f~~lt~~~~~----~~~ll~nl~~~~F~~P-----t~iq~~aipvfl~~r~~lAcapTG 183 (593)
T KOG0344|consen 115 RKSNKINVDGFHLPPP--LLSFSDLTYDYSM----NKRLLENLQELGFDEP-----TPIQKQAIPVFLEKRDVLACAPTG 183 (593)
T ss_pred hhcceeeccCCCCCCc--cccccccchhhhh----cHHHHHhHhhCCCCCC-----CcccchhhhhhhcccceEEeccCC
Confidence 5577888999887755 3334333322233 4445666778999999 999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh--c-CCcEEEEeCCCCCH-HHHHHHhh
Q 008235 228 STIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK--A-FGIHTVSLHPGAAI-DHQITGLR 303 (573)
Q Consensus 228 ~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~--~-~~i~~~~~~gg~~~-~~~~~~l~ 303 (573)
||||++|.+|++.+|...... ....|.+++|+.||||||.|++.++.++. . .+++++.+...... +.+.....
T Consensus 184 -sgKtlaf~~Pil~~L~~~~~~--~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~ 260 (593)
T KOG0344|consen 184 -SGKTLAFNLPILQHLKDLSQE--KHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSD 260 (593)
T ss_pred -CcchhhhhhHHHHHHHHhhcc--cCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHH
Confidence 999999999999999876532 22368999999999999999999999985 2 25555544433222 22222222
Q ss_pred cCCCcEEEeCHHHHHHHHHcCC--CCCCCccEEEEeCcccccC----cchHHHHHHhcC-CCCcEEEEeccCCccHHHHH
Q 008235 304 SCEPEFLVSTPERLLKLVSLKA--IDVSGVSLLVVDRLDSLSK----GDTLSLIRQSIS-GKPHTVVFNDCLTYTSVPAV 376 (573)
Q Consensus 304 ~~~~~IlV~TP~rL~~~l~~~~--~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~-~~~q~l~~SAT~~~~~~~~~ 376 (573)
. .++|+|+||.|+..++..+. ++++.|.++|+||||++++ ..++..|++.|. ++..+-+||||++..+++++
T Consensus 261 ~-k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~ 339 (593)
T KOG0344|consen 261 E-KYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWA 339 (593)
T ss_pred H-HHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHH
Confidence 2 58999999999999998876 7899999999999999998 678888998884 67788899999999999999
Q ss_pred HHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHH-HH
Q 008235 377 QNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTL-KC 455 (573)
Q Consensus 377 ~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L-~~ 455 (573)
...+.+++ .+.++.. +.....|.|..++|.++..|+..+.+++...+ .+++|||+.+.+.|..|+..| ..
T Consensus 340 ~~i~~~~~-~vivg~~-~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~-------~PP~lIfVQs~eRak~L~~~L~~~ 410 (593)
T KOG0344|consen 340 ELIKSDLK-RVIVGLR-NSANETVDQELVFCGSEKGKLLALRQLVASGF-------KPPVLIFVQSKERAKQLFEELEIY 410 (593)
T ss_pred HHhhccce-eEEEecc-hhHhhhhhhhheeeecchhHHHHHHHHHhccC-------CCCeEEEEecHHHHHHHHHHhhhc
Confidence 99999997 6777764 46678899999999999999988888877653 589999999999999999999 77
Q ss_pred CCCCeeeecCCCH-----HHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcc
Q 008235 456 KGYSISTGSNCIV-----SHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSG 530 (573)
Q Consensus 456 ~g~~~~~~~~~~~-----~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G 530 (573)
.++++.. +||++ +.++++| +.|..+++++ +|+. +||||+.+|++|||||+|.+..+|+||+||+||+|+.|
T Consensus 411 ~~i~v~v-Ih~e~~~~qrde~~~~F-R~g~IwvLic-Tdll-~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g 486 (593)
T KOG0344|consen 411 DNINVDV-IHGERSQKQRDETMERF-RIGKIWVLIC-TDLL-ARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSG 486 (593)
T ss_pred cCcceee-EecccchhHHHHHHHHH-hccCeeEEEe-hhhh-hccccccCcceEEecCCCchhHHHHHHhhccCCCCCCc
Confidence 8888886 57764 4589999 9999999888 6888 59999999999999999999999999999999999999
Q ss_pred eEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHhhhcC
Q 008235 531 ILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDLCHTS 569 (573)
Q Consensus 531 ~~i~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~~~ 569 (573)
.||+||+..|..+++.++++++++|++||+|+..+...+
T Consensus 487 ~Aitfytd~d~~~ir~iae~~~~sG~evpe~~m~~~k~~ 525 (593)
T KOG0344|consen 487 KAITFYTDQDMPRIRSIAEVMEQSGCEVPEKIMGIKKLS 525 (593)
T ss_pred ceEEEeccccchhhhhHHHHHHHcCCcchHHHHhhhhhh
Confidence 999999999999999999999999999999999988543
No 30
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-56 Score=435.61 Aligned_cols=362 Identities=15% Similarity=0.249 Sum_probs=324.5
Q ss_pred CCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhc
Q 008235 167 QACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIAR 246 (573)
Q Consensus 167 ~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~ 246 (573)
.+|+++++++.+ +..|+ ..||.+| +.||+.||+++..|.|+++.|++| ||||.+|++++++++.-.
T Consensus 26 dsfddm~L~e~L----Lrgiy----~yGFekP-----SaIQqraI~p~i~G~dv~~qaqsg-TgKt~af~i~iLq~iD~~ 91 (397)
T KOG0327|consen 26 DSFDDMNLKESL----LRGIY----AYGFEKP-----SAIQQRAILPCIKGHDVIAQAQSG-TGKTAAFLISILQQIDMS 91 (397)
T ss_pred hhhhhcCCCHHH----HhHHH----hhccCCc-----hHHHhccccccccCCceeEeeecc-ccchhhhHHHHHhhcCcc
Confidence 468888888887 66654 5799999 999999999999999999999999 999999999999988433
Q ss_pred hhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC
Q 008235 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA 325 (573)
Q Consensus 247 ~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~ 325 (573)
. ....||+++||||||.|+..+...+.. .+.++..+.||.+...+...+....++|+|+||||+.+++..+.
T Consensus 92 ~-------ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~ 164 (397)
T KOG0327|consen 92 V-------KETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGS 164 (397)
T ss_pred h-------HHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcccc
Confidence 2 466899999999999999999999855 48999999999998866666665479999999999999999998
Q ss_pred CCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEE
Q 008235 326 IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQ 402 (573)
Q Consensus 326 ~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~ 402 (573)
+..+.++++|+||||.|+. .+++..|++.+|++.|+++||||+|.++..+.+.|+.+|+ .+.+...+ .+...|+|
T Consensus 165 l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv-~i~vkk~~-ltl~gikq 242 (397)
T KOG0327|consen 165 LSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPV-RILVKKDE-LTLEGIKQ 242 (397)
T ss_pred ccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCce-EEEecchh-hhhhheee
Confidence 8899999999999999998 8999999999999999999999999999999999999997 78877653 66889999
Q ss_pred EEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHH-----HHHHHHh
Q 008235 403 SVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSH-----IKNSVEA 477 (573)
Q Consensus 403 ~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~-----~l~~F~~ 477 (573)
+|+.+.. +.|+..|+++... -...+|||||+..+..+...|...++.+.+ .||++.| +++.| +
T Consensus 243 ~~i~v~k-~~k~~~l~dl~~~---------~~q~~if~nt~r~v~~l~~~L~~~~~~~s~-~~~d~~q~~R~~~~~ef-~ 310 (397)
T KOG0327|consen 243 FYINVEK-EEKLDTLCDLYRR---------VTQAVIFCNTRRKVDNLTDKLRAHGFTVSA-IHGDMEQNERDTLMREF-R 310 (397)
T ss_pred eeeeccc-cccccHHHHHHHh---------hhcceEEecchhhHHHHHHHHhhCCceEEE-eecccchhhhhHHHHHh-h
Confidence 9999974 5599888888873 368899999999999999999999999986 5887665 79999 9
Q ss_pred cCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCCC
Q 008235 478 DGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQV 557 (573)
Q Consensus 478 ~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~ 557 (573)
.|..++|+. +|.. +||||+.++..||||++|...++|+||+||+||.|++|.+++|++..|...++.+.+++.....+
T Consensus 311 ~gssrvlIt-tdl~-argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e 388 (397)
T KOG0327|consen 311 SGSSRVLIT-TDLL-ARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEE 388 (397)
T ss_pred cCCceEEee-cccc-ccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCccee
Confidence 999999866 5788 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHh
Q 008235 558 VPDALRDL 565 (573)
Q Consensus 558 vp~~l~~~ 565 (573)
+|.....+
T Consensus 389 ~p~~~~~l 396 (397)
T KOG0327|consen 389 LPSNFADL 396 (397)
T ss_pred cccchhhc
Confidence 99876554
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-55 Score=426.86 Aligned_cols=363 Identities=14% Similarity=0.193 Sum_probs=309.2
Q ss_pred CCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcC--CcEEEEeCCCchhHHHHHHHHHHHHH
Q 008235 166 GQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADS 243 (573)
Q Consensus 166 ~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g--~dvl~~A~TG~SGKTlaf~lp~l~~l 243 (573)
..+|+++.+.+.+ ++. ++.++|.+| +-||..|+|.++.. +++|++|..| ||||.||.|.||.++
T Consensus 89 ~ksFeeL~LkPel----lkg----ly~M~F~kP-----skIQe~aLPlll~~Pp~nlIaQsqsG-tGKTaaFvL~MLsrv 154 (477)
T KOG0332|consen 89 AKSFEELRLKPEL----LKG----LYAMKFQKP-----SKIQETALPLLLAEPPQNLIAQSQSG-TGKTAAFVLTMLSRV 154 (477)
T ss_pred cccHHhhCCCHHH----HhH----HHHhccCCc-----chHHHhhcchhhcCCchhhhhhhcCC-CchhHHHHHHHHHhc
Confidence 5667777777766 444 456899999 99999999999997 9999999999 999999999999988
Q ss_pred HhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcC-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHH
Q 008235 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVS 322 (573)
Q Consensus 244 ~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~ 322 (573)
...- ..|.++.|+||||||.|+.+++.+++.+ ++++...+.|....+ -..+ ..+|+|+|||.+.|++.
T Consensus 155 d~~~-------~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r-G~~i---~eqIviGTPGtv~Dlm~ 223 (477)
T KOG0332|consen 155 DPDV-------VVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR-GNKL---TEQIVIGTPGTVLDLML 223 (477)
T ss_pred Cccc-------cCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc-CCcc---hhheeeCCCccHHHHHH
Confidence 6542 5789999999999999999999999665 788777766652111 1122 24799999999999998
Q ss_pred c-CCCCCCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccc
Q 008235 323 L-KAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQS 397 (573)
Q Consensus 323 ~-~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ 397 (573)
. +.+++..++++|+||||.|++ .++-..|...+|++.|+++||||+...+..++..++.++. .+.+... ....
T Consensus 224 klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n-~i~Lk~e-el~L 301 (477)
T KOG0332|consen 224 KLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNAN-VIILKRE-ELAL 301 (477)
T ss_pred HHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCc-eeeeehh-hccc
Confidence 8 889999999999999999999 7788899999999999999999999999999999999995 6777665 3667
Q ss_pred cceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHH
Q 008235 398 ACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIK 472 (573)
Q Consensus 398 ~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l 472 (573)
.+|.|.|+.|..+.+|++.|.++..- +. .++.||||.|+..|..|+..|...|+.+.. .||+ |..++
T Consensus 302 ~~IkQlyv~C~~~~~K~~~l~~lyg~-~t------igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~-l~G~l~~~~R~~ii 373 (477)
T KOG0332|consen 302 DNIKQLYVLCACRDDKYQALVNLYGL-LT------IGQSIIFCHTKATAMWLYEEMRAEGHQVSL-LHGDLTVEQRAAII 373 (477)
T ss_pred cchhhheeeccchhhHHHHHHHHHhh-hh------hhheEEEEeehhhHHHHHHHHHhcCceeEE-eeccchhHHHHHHH
Confidence 88999999999999999888774332 22 679999999999999999999999999986 4886 45589
Q ss_pred HHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCC------CHHHHHHHHhccccCCCcceEEEEeccc-cHHHHH
Q 008235 473 NSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFII------SMKNYVEILTSMARHTVSGILHSFFTKD-DAAHAG 545 (573)
Q Consensus 473 ~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~------s~~~YiqR~GR~gR~g~~G~~i~~~~~~-d~~~~~ 545 (573)
++| ++|+..+|++ ++|. |||||++.|++|||||+|. +.++|+||+|||||.|+.|.++.|+..+ +...+.
T Consensus 374 ~~F-r~g~~kVLit-TnV~-ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn 450 (477)
T KOG0332|consen 374 DRF-REGKEKVLIT-TNVC-ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMN 450 (477)
T ss_pred HHH-hcCcceEEEE-echh-hcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHH
Confidence 999 9999999887 6899 7999999999999999994 7899999999999999999999999754 677888
Q ss_pred HHHHHHHHc-CCCCCHHHHHhh
Q 008235 546 QMIEILEQC-GQVVPDALRDLC 566 (573)
Q Consensus 546 ~l~~~l~~~-~~~vp~~l~~~~ 566 (573)
.|.++++.. ..-.|+++.++-
T Consensus 451 ~iq~~F~~~i~~~~~~d~~E~e 472 (477)
T KOG0332|consen 451 KIQKHFNMKIKRLDPDDLDELE 472 (477)
T ss_pred HHHHHHhhcceecCCccHHHHH
Confidence 999988654 445566665553
No 32
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5e-54 Score=456.88 Aligned_cols=361 Identities=14% Similarity=0.173 Sum_probs=305.8
Q ss_pred CccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhch
Q 008235 168 ACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARK 247 (573)
Q Consensus 168 ~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~ 247 (573)
+|+.+++++.+ .++++..||..| ||+|.++|+.+++|+|++++|||| ||||++|++|++..+....
T Consensus 29 ~~~~l~l~~~~--------~~~l~~~~~~~~-----~~~Q~~ai~~i~~~~d~ii~apTG-sGKT~~~~l~~l~~~~~~~ 94 (401)
T PTZ00424 29 SFDALKLNEDL--------LRGIYSYGFEKP-----SAIQQRGIKPILDGYDTIGQAQSG-TGKTATFVIAALQLIDYDL 94 (401)
T ss_pred CHhhCCCCHHH--------HHHHHHcCCCCC-----CHHHHHHHHHHhCCCCEEEECCCC-ChHHHHHHHHHHHHhcCCC
Confidence 35555555444 455677899999 999999999999999999999999 9999999999998775321
Q ss_pred hccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCC
Q 008235 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI 326 (573)
Q Consensus 248 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~ 326 (573)
.++++|||+||+|||.|+.+.+..+.. .++.+..++||.....+...+.. +++|+|+||++|++++..+..
T Consensus 95 -------~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~~~ 166 (401)
T PTZ00424 95 -------NACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKA-GVHMVVGTPGRVYDMIDKRHL 166 (401)
T ss_pred -------CCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcC-CCCEEEECcHHHHHHHHhCCc
Confidence 467899999999999999999998844 47888889999988888888877 799999999999999998888
Q ss_pred CCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEE
Q 008235 327 DVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQS 403 (573)
Q Consensus 327 ~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~ 403 (573)
.++++++|||||||++++ ...+..++..++++.|++++|||+|..+..+...++.+|. .+.+... ......+.+.
T Consensus 167 ~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ 244 (401)
T PTZ00424 167 RVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPK-RILVKKD-ELTLEGIRQF 244 (401)
T ss_pred ccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCE-EEEeCCC-CcccCCceEE
Confidence 899999999999999987 5677888888999999999999999999999999998885 4444432 2345678888
Q ss_pred EEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhc
Q 008235 404 VNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEAD 478 (573)
Q Consensus 404 ~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~ 478 (573)
+..+.....+...+..++.. .. ..++||||+|+..|+.++..|...++.+..+ ||+ +..+++.| ++
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~----~~---~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~-h~~~~~~~R~~i~~~f-~~ 315 (401)
T PTZ00424 245 YVAVEKEEWKFDTLCDLYET----LT---ITQAIIYCNTRRKVDYLTKKMHERDFTVSCM-HGDMDQKDRDLIMREF-RS 315 (401)
T ss_pred EEecChHHHHHHHHHHHHHh----cC---CCeEEEEecCcHHHHHHHHHHHHCCCcEEEE-eCCCCHHHHHHHHHHH-Hc
Confidence 88886555566555554443 22 4689999999999999999999999988864 664 44589999 99
Q ss_pred CCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCCCC
Q 008235 479 GRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVV 558 (573)
Q Consensus 479 g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~v 558 (573)
|+.++|++ ||+. .+|||+|+|++||+||+|.+..+|+||+||+||.|+.|.|++|++++|...+..+.+.+.....++
T Consensus 316 g~~~vLva-T~~l-~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~ 393 (401)
T PTZ00424 316 GSTRVLIT-TDLL-ARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEM 393 (401)
T ss_pred CCCCEEEE-cccc-cCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCccccc
Confidence 99999888 6788 489999999999999999999999999999999999999999999999999999999888777777
Q ss_pred CHHHH
Q 008235 559 PDALR 563 (573)
Q Consensus 559 p~~l~ 563 (573)
|+...
T Consensus 394 ~~~~~ 398 (401)
T PTZ00424 394 PMEVA 398 (401)
T ss_pred Ccchh
Confidence 76543
No 33
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-55 Score=439.46 Aligned_cols=348 Identities=17% Similarity=0.173 Sum_probs=283.8
Q ss_pred hHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhc---------CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCC
Q 008235 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSS---------AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGF 252 (573)
Q Consensus 182 ~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~---------g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~ 252 (573)
+...+.+++..+++.+. +|+|..++|.++. ++||++.|||| |||||||.||+++.+...+
T Consensus 144 lea~~~q~l~k~~is~~-----FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTG-SGKTLaY~iPIVQ~L~~R~----- 212 (620)
T KOG0350|consen 144 LEATIDQLLVKMAISRL-----FPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTG-SGKTLAYVIPIVQLLSSRP----- 212 (620)
T ss_pred HHHHHHHHHHHhhcccc-----cchHHHHHHHHHHhhcCCCCCCCCceEEecCCC-CCceeeehhHHHHHHccCC-----
Confidence 45566777888999888 9999999998842 58999999999 9999999999999887664
Q ss_pred CCCCcEEEEEcccHHHHHHHHHHHhhh-hcCCcEEEEeCCCCCHHHHHHHhhcCCC----cEEEeCHHHHHHHHHc-CCC
Q 008235 253 SFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEP----EFLVSTPERLLKLVSL-KAI 326 (573)
Q Consensus 253 ~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~~i~~~~~~gg~~~~~~~~~l~~~~~----~IlV~TP~rL~~~l~~-~~~ 326 (573)
.+..++|||+|||+|+.||+++|..+ ...|+.|+.+.|..+..++.+.|.+..+ ||||+|||||.|||.+ ..+
T Consensus 213 -v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f 291 (620)
T KOG0350|consen 213 -VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSF 291 (620)
T ss_pred -ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCc
Confidence 24689999999999999999999999 4459999999999999999888876445 9999999999999996 779
Q ss_pred CCCCccEEEEeCcccccC---cchHHHHHHhcC----------------------------------CCCcEEEEeccCC
Q 008235 327 DVSGVSLLVVDRLDSLSK---GDTLSLIRQSIS----------------------------------GKPHTVVFNDCLT 369 (573)
Q Consensus 327 ~l~~l~~lViDEad~ll~---~~~l~~Il~~l~----------------------------------~~~q~l~~SAT~~ 369 (573)
+|++++||||||||||++ ...+..++..+. +..+.++||||++
T Consensus 292 ~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLs 371 (620)
T KOG0350|consen 292 DLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLS 371 (620)
T ss_pred chhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhh
Confidence 999999999999999998 333333333331 1235789999999
Q ss_pred ccHHHHHHHHhcCCceEEEcCC---CccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhH
Q 008235 370 YTSVPAVQNLLLGSINRLSLNQ---SVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKF 446 (573)
Q Consensus 370 ~~~~~~~~~~l~~~~~~i~~~~---~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~ 446 (573)
..-..+...-++.|- .+.+.. .....+..+.+.++.++ ..-|...++.++..+ +..++|+|+++...+
T Consensus 372 qdP~Kl~~l~l~~Pr-l~~v~~~~~~ryslp~~l~~~~vv~~-~~~kpl~~~~lI~~~-------k~~r~lcf~~S~~sa 442 (620)
T KOG0350|consen 372 QDPSKLKDLTLHIPR-LFHVSKPLIGRYSLPSSLSHRLVVTE-PKFKPLAVYALITSN-------KLNRTLCFVNSVSSA 442 (620)
T ss_pred cChHHHhhhhcCCCc-eEEeecccceeeecChhhhhceeecc-cccchHhHHHHHHHh-------hcceEEEEecchHHH
Confidence 998888888888883 222221 23466778888888886 455777777777663 367999999999999
Q ss_pred HHHHHHHHH----CCCCeeeecC----CCHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHH
Q 008235 447 QNLVSTLKC----KGYSISTGSN----CIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVE 518 (573)
Q Consensus 447 ~~l~~~L~~----~g~~~~~~~~----~~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~Yiq 518 (573)
.+|+..|.- ..+.+..+.. ..+...++.| ..|..++|++ .|+. +||||+.+|+.|||||+|.+..+|||
T Consensus 443 ~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f-~~g~i~vLIc-SD~l-aRGiDv~~v~~VINYd~P~~~ktyVH 519 (620)
T KOG0350|consen 443 NRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKF-AKGDINVLIC-SDAL-ARGIDVNDVDNVINYDPPASDKTYVH 519 (620)
T ss_pred HHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHH-hcCCceEEEe-hhhh-hcCCcccccceEeecCCCchhhHHHH
Confidence 999998872 2333333211 1345689999 8888888766 5899 69999999999999999999999999
Q ss_pred HHhccccCCCcceEEEEeccccHHHHHHHHHHHHH
Q 008235 519 ILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQ 553 (573)
Q Consensus 519 R~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~ 553 (573)
|+|||||+|+.|.|+++++..+.+.+..+.+....
T Consensus 520 R~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 520 RAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred hhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 99999999999999999999999888877776554
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.4e-55 Score=453.44 Aligned_cols=342 Identities=17% Similarity=0.204 Sum_probs=297.9
Q ss_pred hHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEE
Q 008235 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (573)
Q Consensus 182 ~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Li 261 (573)
|...+...|+..+|..| |+||..|||.++.+.|+|++|..| +|||++|.+.+++.+.... ..+.++|
T Consensus 32 l~r~vl~glrrn~f~~p-----tkiQaaAIP~~~~kmDliVQaKSG-TGKTlVfsv~av~sl~~~~-------~~~q~~I 98 (980)
T KOG4284|consen 32 LWREVLLGLRRNAFALP-----TKIQAAAIPAIFSKMDLIVQAKSG-TGKTLVFSVLAVESLDSRS-------SHIQKVI 98 (980)
T ss_pred HHHHHHHHHHhhcccCC-----CchhhhhhhhhhcccceEEEecCC-CCceEEEEeeeehhcCccc-------CcceeEE
Confidence 45666677777899999 999999999999999999999999 9999999999998876543 5789999
Q ss_pred EcccHHHHHHHHHHHhhhhc--CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCc
Q 008235 262 LVSSQEKAAKVRSVCKPLKA--FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (573)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~~--~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEa 339 (573)
|+||||+|.||.+.+..++. .|+++.+++||++......+|+. ++|+|||||||..++..+.++.++++++|||||
T Consensus 99 v~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~--~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEA 176 (980)
T KOG4284|consen 99 VTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ--TRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEA 176 (980)
T ss_pred EecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh--ceEEecCchHHHHHHHhcCCCccceeEEEeccH
Confidence 99999999999999999955 49999999999999888888886 789999999999999999999999999999999
Q ss_pred ccccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChh---H
Q 008235 340 DSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDE---E 412 (573)
Q Consensus 340 d~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~---~ 412 (573)
|.|++ .+++..|+..+|..+|++.||||.|..+.+++..||++|. .|...... ...-.|+|+++...+.. +
T Consensus 177 DkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~-lVr~n~~d-~~L~GikQyv~~~~s~nnsve 254 (980)
T KOG4284|consen 177 DKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPA-LVRFNADD-VQLFGIKQYVVAKCSPNNSVE 254 (980)
T ss_pred HhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccc-eeecccCC-ceeechhheeeeccCCcchHH
Confidence 99999 8899999999999999999999999999999999999996 88887653 55668999998876542 1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHH-----HHHHHHhcCCCCCeEEE
Q 008235 413 KILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSH-----IKNSVEADGRKRPAVSM 487 (573)
Q Consensus 413 k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~-----~l~~F~~~g~~~~l~~l 487 (573)
-+..-++.|.+++..-. ..++||||+....|+-++..|...|+++.. +.|.|.| +++.+ ++++.++|++
T Consensus 255 emrlklq~L~~vf~~ip---y~QAlVF~~~~sra~~~a~~L~ssG~d~~~-ISgaM~Q~~Rl~a~~~l-r~f~~rILVs- 328 (980)
T KOG4284|consen 255 EMRLKLQKLTHVFKSIP---YVQALVFCDQISRAEPIATHLKSSGLDVTF-ISGAMSQKDRLLAVDQL-RAFRVRILVS- 328 (980)
T ss_pred HHHHHHHHHHHHHhhCc---hHHHHhhhhhhhhhhHHHHHhhccCCCeEE-eccccchhHHHHHHHHh-hhceEEEEEe-
Confidence 12222234444444433 789999999999999999999999999986 5777665 67777 7888999887
Q ss_pred EeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccc-cHHHHHHH
Q 008235 488 IDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKD-DAAHAGQM 547 (573)
Q Consensus 488 vd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~-d~~~~~~l 547 (573)
+|++ +||||-++|++|||.|+|.+.++|+||+||+||.|..|.+++|+... +...+..|
T Consensus 329 TDLt-aRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 329 TDLT-ARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred cchh-hccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 7999 69999999999999999999999999999999999999999999865 44555555
No 35
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-55 Score=433.60 Aligned_cols=351 Identities=18% Similarity=0.179 Sum_probs=308.7
Q ss_pred ccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchh
Q 008235 169 CEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKE 248 (573)
Q Consensus 169 ~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~ 248 (573)
|..+++...+ . +++.+.||..| ||||+++||.++.|+|+++.|.|| ||||.||++||++++....
T Consensus 23 fqsmgL~~~v----~----raI~kkg~~~p-----tpiqRKTipliLe~~dvv~martg-sgktaaf~ipm~e~Lk~~s- 87 (529)
T KOG0337|consen 23 FQSMGLDYKV----L----RAIHKKGFNTP-----TPIQRKTIPLILEGRDVVGMARTG-SGKTAAFLIPMIEKLKSHS- 87 (529)
T ss_pred ccccCCCHHH----H----HHHHHhhcCCC-----CchhcccccceeeccccceeeecC-CcchhhHHHHHHHHHhhcc-
Confidence 6667776665 4 44556899999 999999999999999999999999 9999999999999998764
Q ss_pred ccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCC
Q 008235 249 KEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327 (573)
Q Consensus 249 ~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~ 327 (573)
. .|.++||++||||||.|+.++++.++. .++++++++||....+|+..|.. ++|||+||||+++.+...-.+.
T Consensus 88 ~-----~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~-npDii~ATpgr~~h~~vem~l~ 161 (529)
T KOG0337|consen 88 Q-----TGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNE-NPDIIIATPGRLLHLGVEMTLT 161 (529)
T ss_pred c-----cccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhcc-CCCEEEecCceeeeeehheecc
Confidence 1 588999999999999999999999966 49999999999999999999987 8999999999998887776688
Q ss_pred CCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEE
Q 008235 328 VSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSV 404 (573)
Q Consensus 328 l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~ 404 (573)
|+.+.|||+||||++++ .+++..|+..++.++|+++||||+|..+.++++.-+.+|+ .|.++-. ......+...+
T Consensus 162 l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~-lVRldve-tkise~lk~~f 239 (529)
T KOG0337|consen 162 LSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPV-LVRLDVE-TKISELLKVRF 239 (529)
T ss_pred ccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCc-eEEeehh-hhcchhhhhhe
Confidence 99999999999999999 7999999999999999999999999999999999999996 5665532 35667788888
Q ss_pred EEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHH-----HHHHHHhcC
Q 008235 405 NVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSH-----IKNSVEADG 479 (573)
Q Consensus 405 ~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~-----~l~~F~~~g 479 (573)
..+. ..+|..+|+.++..... +.+++|||.|...|+.+...|+..|+.+..+ .+.+++ .+++| +.+
T Consensus 240 ~~~~-~a~K~aaLl~il~~~~~------~~~t~vf~~tk~hve~~~~ll~~~g~~~s~i-ysslD~~aRk~~~~~F-~~~ 310 (529)
T KOG0337|consen 240 FRVR-KAEKEAALLSILGGRIK------DKQTIVFVATKHHVEYVRGLLRDFGGEGSDI-YSSLDQEARKINGRDF-RGR 310 (529)
T ss_pred eeec-cHHHHHHHHHHHhcccc------ccceeEEecccchHHHHHHHHHhcCCCcccc-ccccChHhhhhccccc-cCC
Confidence 8886 67899888888877644 4589999999999999999999999988753 554443 47788 777
Q ss_pred CCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHH
Q 008235 480 RKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQ 553 (573)
Q Consensus 480 ~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~ 553 (573)
+..+++. +|++ +||+|||-.+.|||||+|.+...|+||+||++|+|+.|.+|+|+.+.|..++-.|--+|..
T Consensus 311 k~~~lvv-Tdva-aRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 311 KTSILVV-TDVA-ARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred ccceEEE-ehhh-hccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 7777655 6999 6999999999999999999999999999999999999999999999999998888777654
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=4.6e-51 Score=458.31 Aligned_cols=344 Identities=10% Similarity=0.109 Sum_probs=264.4
Q ss_pred CCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCC
Q 008235 173 DCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGF 252 (573)
Q Consensus 173 ~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~ 252 (573)
++|.++ .+.|.++|.+.||..| |++|.++||.+++|+|++++|||| ||||+||++|+++.+...
T Consensus 16 ~~~~~l----~~~l~~~L~~~g~~~p-----~~~Q~~ai~~il~G~nvvv~apTG-SGKTla~~LPiL~~l~~~------ 79 (742)
T TIGR03817 16 PWPAWA----HPDVVAALEAAGIHRP-----WQHQARAAELAHAGRHVVVATGTA-SGKSLAYQLPVLSALADD------ 79 (742)
T ss_pred CCCCcC----CHHHHHHHHHcCCCcC-----CHHHHHHHHHHHCCCCEEEECCCC-CcHHHHHHHHHHHHHhhC------
Confidence 345555 6677778888999999 999999999999999999999999 999999999999998754
Q ss_pred CCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC----CCCC
Q 008235 253 SFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK----AIDV 328 (573)
Q Consensus 253 ~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~----~~~l 328 (573)
.++++|||+||||||.|+...++.+...++++..+.|+.+. .+...+.. +++|||+||++|...+... ...+
T Consensus 80 --~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~-~~r~~i~~-~~~IivtTPd~L~~~~L~~~~~~~~~l 155 (742)
T TIGR03817 80 --PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPT-EERRWARE-HARYVLTNPDMLHRGILPSHARWARFL 155 (742)
T ss_pred --CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCH-HHHHHHhc-CCCEEEEChHHHHHhhccchhHHHHHH
Confidence 36799999999999999999999987557888887777764 45566666 7999999999987533221 1237
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHh-------cCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccc
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQS-------ISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSAC 399 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~-------l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~ 399 (573)
+++++|||||||.|.+ ...+..++.. .+.++|+++||||+++.. +++..++..|+..+.... .....
T Consensus 156 ~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~i~~~~---~~~~~ 231 (742)
T TIGR03817 156 RRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVAVTEDG---SPRGA 231 (742)
T ss_pred hcCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEEECCCC---CCcCc
Confidence 8999999999999977 3444444433 356789999999999864 467888888853332211 11122
Q ss_pred eEEEEEEcCC----------------hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC-------
Q 008235 400 IIQSVNVCAS----------------DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK------- 456 (573)
Q Consensus 400 i~~~~~~~~~----------------~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~------- 456 (573)
.+.+..... ...+... |..++.. ..++||||+|+..|+.++..|...
T Consensus 232 -~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~----l~~l~~~-----~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~ 301 (742)
T TIGR03817 232 -RTVALWEPPLTELTGENGAPVRRSASAEAADL----LADLVAE-----GARTLTFVRSRRGAELVAAIARRLLGEVDPD 301 (742)
T ss_pred -eEEEEecCCccccccccccccccchHHHHHHH----HHHHHHC-----CCCEEEEcCCHHHHHHHHHHHHHHHHhhccc
Confidence 222222111 1233333 3333332 469999999999999999988763
Q ss_pred -CCCeeeecCC-----CHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcc
Q 008235 457 -GYSISTGSNC-----IVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSG 530 (573)
Q Consensus 457 -g~~~~~~~~~-----~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G 530 (573)
+..+.. +|| +|..++++| ++|+.++|++ ||++ .+|||||+|++|||||+|.++.+|+||+|||||+|+.|
T Consensus 302 l~~~v~~-~hgg~~~~eR~~ie~~f-~~G~i~vLVa-Td~l-erGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g 377 (742)
T TIGR03817 302 LAERVAA-YRAGYLPEDRRELERAL-RDGELLGVAT-TNAL-ELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGA 377 (742)
T ss_pred cccchhh-eecCCCHHHHHHHHHHH-HcCCceEEEE-CchH-hccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCc
Confidence 445554 455 456689999 9999999888 6788 49999999999999999999999999999999999999
Q ss_pred eEEEEec--cccHHHHHHHHHHHHHc
Q 008235 531 ILHSFFT--KDDAAHAGQMIEILEQC 554 (573)
Q Consensus 531 ~~i~~~~--~~d~~~~~~l~~~l~~~ 554 (573)
.+++|+. +.|...+..+.++++..
T Consensus 378 ~ai~v~~~~~~d~~~~~~~~~~~~~~ 403 (742)
T TIGR03817 378 LVVLVARDDPLDTYLVHHPEALFDRP 403 (742)
T ss_pred EEEEEeCCChHHHHHHhCHHHHhcCC
Confidence 9999986 55777777777676644
No 37
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-50 Score=371.94 Aligned_cols=323 Identities=17% Similarity=0.207 Sum_probs=282.2
Q ss_pred HHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE
Q 008235 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (573)
Q Consensus 183 ~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil 262 (573)
-+.|.+++-..||.+| +.+|.++||...-|.|++.+|.+| .|||..|.+..|+.+...+ ....+|++
T Consensus 50 kpellraivdcgfehp-----sevqhecipqailgmdvlcqaksg-mgktavfvl~tlqqiepv~-------g~vsvlvm 116 (387)
T KOG0329|consen 50 KPELLRAIVDCGFEHP-----SEVQHECIPQAILGMDVLCQAKSG-MGKTAVFVLATLQQIEPVD-------GQVSVLVM 116 (387)
T ss_pred CHHHHHHHHhccCCCc-----hHhhhhhhhHHhhcchhheecccC-CCceeeeehhhhhhcCCCC-------CeEEEEEE
Confidence 4456667777899999 999999999999999999999999 9999999999998876542 35678999
Q ss_pred cccHHHHHHHHHHHhhhhcC--CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcc
Q 008235 263 VSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (573)
Q Consensus 263 ~PtreLa~Qi~~~~~~l~~~--~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad 340 (573)
|.|||||-||.....+|+.+ ++++..++||.++....+.|++ -|+|+||||||++.+.+++.+++++++.+|+||||
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~-~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcd 195 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN-CPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECD 195 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC-CCeEEEcCcHHHHHHHHhccCchhhcceeehhhHH
Confidence 99999999999999999553 9999999999999999999998 69999999999999999999999999999999999
Q ss_pred cccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHH
Q 008235 341 SLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILK 416 (573)
Q Consensus 341 ~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 416 (573)
.|++ +.+++.|++..|...|+++||||++.+++..+++|+.+|. .|.+++....+...+.|+|+... +.+|...
T Consensus 196 kmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPm-Ei~vDdE~KLtLHGLqQ~YvkLk-e~eKNrk 273 (387)
T KOG0329|consen 196 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPM-EIFVDDEAKLTLHGLQQYYVKLK-ENEKNRK 273 (387)
T ss_pred HHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCch-hhhccchhhhhhhhHHHHHHhhh-hhhhhhh
Confidence 9998 8899999999999999999999999999999999999997 67777655567788999999886 6778878
Q ss_pred HHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHHHHHHHHhcCCCCCeEEEEeccccCCC
Q 008235 417 GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTA 496 (573)
Q Consensus 417 l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~l~~F~~~g~~~~l~~lvd~~s~rGl 496 (573)
+.++|..+- ..+++||+.|... ++ | ..+ +++ +|+.. ||+
T Consensus 274 l~dLLd~Le-------FNQVvIFvKsv~R---l~------------------------f----~kr-~va-t~lfg-rgm 312 (387)
T KOG0329|consen 274 LNDLLDVLE-------FNQVVIFVKSVQR---LS------------------------F----QKR-LVA-TDLFG-RGM 312 (387)
T ss_pred hhhhhhhhh-------hcceeEeeehhhh---hh------------------------h----hhh-hHH-hhhhc-ccc
Confidence 888777652 5799999988765 11 2 112 233 46775 899
Q ss_pred ccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEecc-ccHHHHHHHHHHHHHcCCCCCHHH
Q 008235 497 ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTK-DDAAHAGQMIEILEQCGQVVPDAL 562 (573)
Q Consensus 497 Dip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~-~d~~~~~~l~~~l~~~~~~vp~~l 562 (573)
||..|+.|||||+|.+.++|+||+||+||.|..|.+|+|++. +|...+..+.+-+.....++|+.+
T Consensus 313 diervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpdei 379 (387)
T KOG0329|consen 313 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDEI 379 (387)
T ss_pred CcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCccc
Confidence 999999999999999999999999999999999999999975 577888888888888888888873
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.2e-46 Score=420.29 Aligned_cols=320 Identities=11% Similarity=0.015 Sum_probs=241.1
Q ss_pred CCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHH
Q 008235 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (573)
Q Consensus 193 ~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi 272 (573)
.|+..+ +|+|.++|++++.|+|+++++||| +|||+||+||++. .+..+|||+|+++|+.++
T Consensus 456 FG~~sF-----Rp~Q~eaI~aiL~GrDVLVimPTG-SGKSLcYQLPAL~-------------~~GiTLVISPLiSLmqDQ 516 (1195)
T PLN03137 456 FGNHSF-----RPNQREIINATMSGYDVFVLMPTG-GGKSLTYQLPALI-------------CPGITLVISPLVSLIQDQ 516 (1195)
T ss_pred cCCCCC-----CHHHHHHHHHHHcCCCEEEEcCCC-ccHHHHHHHHHHH-------------cCCcEEEEeCHHHHHHHH
Confidence 488888 999999999999999999999999 9999999999984 245799999999999743
Q ss_pred HHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhc-----CCCcEEEeCHHHHHH--HHHcCC---CCCCCccEEEEeCcccc
Q 008235 273 RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRS-----CEPEFLVSTPERLLK--LVSLKA---IDVSGVSLLVVDRLDSL 342 (573)
Q Consensus 273 ~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~-----~~~~IlV~TP~rL~~--~l~~~~---~~l~~l~~lViDEad~l 342 (573)
...+. ..++.++.+.|+....++...+.. +.++|||+||++|.. .+.... .....+.+|||||||++
T Consensus 517 V~~L~---~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcV 593 (1195)
T PLN03137 517 IMNLL---QANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCV 593 (1195)
T ss_pred HHHHH---hCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhh
Confidence 33333 348999999999998777655542 478999999999852 222211 12345899999999999
Q ss_pred cC-----cchHHHH--HHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHH
Q 008235 343 SK-----GDTLSLI--RQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL 415 (573)
Q Consensus 343 l~-----~~~l~~I--l~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 415 (573)
++ .+.+..+ +....+..|+++||||++..+...+...+.-.-..+.... ...+++. |.++........
T Consensus 594 SqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S---f~RpNL~--y~Vv~k~kk~le 668 (1195)
T PLN03137 594 SQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS---FNRPNLW--YSVVPKTKKCLE 668 (1195)
T ss_pred hhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc---cCccceE--EEEeccchhHHH
Confidence 87 2333332 3333457899999999999888766665543211222221 1223443 333332222233
Q ss_pred HHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEec
Q 008235 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDK 490 (573)
Q Consensus 416 ~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~ 490 (573)
.+..++.. ... ...+||||+|+..|+.++..|...|+.+..+ ||. |..+++.| ..|+..+|++ |++
T Consensus 669 ~L~~~I~~---~~~---~esgIIYC~SRke~E~LAe~L~~~Gika~~Y-HAGLs~eeR~~vqe~F-~~Gei~VLVA-TdA 739 (1195)
T PLN03137 669 DIDKFIKE---NHF---DECGIIYCLSRMDCEKVAERLQEFGHKAAFY-HGSMDPAQRAFVQKQW-SKDEINIICA-TVA 739 (1195)
T ss_pred HHHHHHHh---ccc---CCCceeEeCchhHHHHHHHHHHHCCCCeeee-eCCCCHHHHHHHHHHH-hcCCCcEEEE-ech
Confidence 34344432 112 4578999999999999999999999999874 664 45589999 9999999888 557
Q ss_pred cccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHH
Q 008235 491 DHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIE 549 (573)
Q Consensus 491 ~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~ 549 (573)
. .+|||+|+|++||||++|.+++.|+||+|||||+|..|.|++|+++.|...+..++.
T Consensus 740 F-GMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 740 F-GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred h-hcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 7 489999999999999999999999999999999999999999999988877776653
No 39
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.6e-46 Score=402.59 Aligned_cols=317 Identities=12% Similarity=0.113 Sum_probs=242.4
Q ss_pred CCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHH
Q 008235 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (573)
Q Consensus 193 ~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi 272 (573)
.||.++ +|+|.++|+.+++|+|++++|||| ||||++|++|++. .+..+|||+||+||+.|+
T Consensus 7 ~g~~~~-----r~~Q~~ai~~~l~g~dvlv~apTG-sGKTl~y~lp~l~-------------~~~~~lVi~P~~~L~~dq 67 (470)
T TIGR00614 7 FGLSSF-----RPVQLEVINAVLLGRDCFVVMPTG-GGKSLCYQLPALC-------------SDGITLVISPLISLMEDQ 67 (470)
T ss_pred cCCCCC-----CHHHHHHHHHHHcCCCEEEEcCCC-CcHhHHHHHHHHH-------------cCCcEEEEecHHHHHHHH
Confidence 589998 999999999999999999999999 9999999999984 245799999999999988
Q ss_pred HHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHH-HcCCC-CCCCccEEEEeCcccccC-c-
Q 008235 273 RSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLV-SLKAI-DVSGVSLLVVDRLDSLSK-G- 345 (573)
Q Consensus 273 ~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l-~~~~~-~l~~l~~lViDEad~ll~-~- 345 (573)
...+..+ |+.+..+.|+.....+. ..+..+.++|+++||+++.... ....+ .+.++.+|||||||++++ .
T Consensus 68 ~~~l~~~---gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~ 144 (470)
T TIGR00614 68 VLQLKAS---GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGH 144 (470)
T ss_pred HHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCcccc
Confidence 8777654 88888888877655432 3344556899999999975322 01111 567899999999999987 2
Q ss_pred ---chH---HHHHHhcCCCCcEEEEeccCCccHHHHHHHHhc--CCceEEEcCCCccccccceEEEEEEcCChhHHHHHH
Q 008235 346 ---DTL---SLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLL--GSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417 (573)
Q Consensus 346 ---~~l---~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~--~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l 417 (573)
+.+ ..+...+ ++.|+++||||+++.+...+...+. .|. .+.... ..+++...+... .......+
T Consensus 145 ~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~-~~~~s~----~r~nl~~~v~~~--~~~~~~~l 216 (470)
T TIGR00614 145 DFRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQ-IFCTSF----DRPNLYYEVRRK--TPKILEDL 216 (470)
T ss_pred ccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCc-EEeCCC----CCCCcEEEEEeC--CccHHHHH
Confidence 222 2333333 5789999999999987766555543 443 232221 123343332222 22334344
Q ss_pred HHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccc
Q 008235 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDH 492 (573)
Q Consensus 418 ~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s 492 (573)
..++.. ... ...+||||+|++.|+.++..|...|+.+..+ ||+ |..+++.| ++|+..+|++ ||+.
T Consensus 217 ~~~l~~---~~~---~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~-H~~l~~~eR~~i~~~F-~~g~~~vLVa-T~~~- 286 (470)
T TIGR00614 217 LRFIRK---EFK---GKSGIIYCPSRKKSEQVTASLQNLGIAAGAY-HAGLEISARDDVHHKF-QRDEIQVVVA-TVAF- 286 (470)
T ss_pred HHHHHH---hcC---CCceEEEECcHHHHHHHHHHHHhcCCCeeEe-eCCCCHHHHHHHHHHH-HcCCCcEEEE-echh-
Confidence 444432 222 4577999999999999999999999999865 664 55689999 8999999888 5677
Q ss_pred cCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHH
Q 008235 493 ISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIE 549 (573)
Q Consensus 493 ~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~ 549 (573)
.+|||+|+|++||||++|.+++.|+||+||+||.|..|.|++|+++.|...++.+..
T Consensus 287 ~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 287 GMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred hccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 489999999999999999999999999999999999999999999999888877754
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=5e-44 Score=395.84 Aligned_cols=314 Identities=13% Similarity=0.118 Sum_probs=241.9
Q ss_pred CCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHH
Q 008235 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (573)
Q Consensus 193 ~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi 272 (573)
.||..+ +|+|.++|+.+++|+|+++++||| +|||++|++|++.. ...+|||+|+++|+.|+
T Consensus 21 fG~~~~-----r~~Q~~ai~~il~g~dvlv~apTG-sGKTl~y~lpal~~-------------~g~tlVisPl~sL~~dq 81 (607)
T PRK11057 21 FGYQQF-----RPGQQEIIDAVLSGRDCLVVMPTG-GGKSLCYQIPALVL-------------DGLTLVVSPLISLMKDQ 81 (607)
T ss_pred cCCCCC-----CHHHHHHHHHHHcCCCEEEEcCCC-chHHHHHHHHHHHc-------------CCCEEEEecHHHHHHHH
Confidence 599888 999999999999999999999999 99999999999842 34689999999999998
Q ss_pred HHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-----
Q 008235 273 RSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----- 344 (573)
Q Consensus 273 ~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----- 344 (573)
.+.+..+ |+.+.++.++.....+. ..+..+.++++++||++|........+...++.+|||||||++.+
T Consensus 82 v~~l~~~---gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~f 158 (607)
T PRK11057 82 VDQLLAN---GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDF 158 (607)
T ss_pred HHHHHHc---CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcc
Confidence 8877765 88888888887766543 334555689999999998732222223456799999999999987
Q ss_pred cch---HHHHHHhcCCCCcEEEEeccCCccHHHHHHHHh--cCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHH
Q 008235 345 GDT---LSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL--LGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419 (573)
Q Consensus 345 ~~~---l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 419 (573)
.+. +..+...+ ++.|++++|||++..+...+...+ .+|. +.+.. ...+++.. ..+. ...+...+..
T Consensus 159 r~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~--~~~~~---~~r~nl~~--~v~~-~~~~~~~l~~ 229 (607)
T PRK11057 159 RPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPL--IQISS---FDRPNIRY--TLVE-KFKPLDQLMR 229 (607)
T ss_pred cHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeE--EEECC---CCCCccee--eeee-ccchHHHHHH
Confidence 222 33333343 578999999999988765444443 3453 22222 11233432 2232 2233444444
Q ss_pred HHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccC
Q 008235 420 VLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHIS 494 (573)
Q Consensus 420 ~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~r 494 (573)
++.. .. +.++||||+|++.|+.++..|...|+.+..+ |+. |.++++.| +.|+..++++ |++. .+
T Consensus 230 ~l~~----~~---~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~-Ha~l~~~~R~~i~~~F-~~g~~~VLVa-T~a~-~~ 298 (607)
T PRK11057 230 YVQE----QR---GKSGIIYCNSRAKVEDTAARLQSRGISAAAY-HAGLDNDVRADVQEAF-QRDDLQIVVA-TVAF-GM 298 (607)
T ss_pred HHHh----cC---CCCEEEEECcHHHHHHHHHHHHhCCCCEEEe-cCCCCHHHHHHHHHHH-HCCCCCEEEE-echh-hc
Confidence 4432 22 5799999999999999999999999999874 664 55689999 8999999888 5677 48
Q ss_pred CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHH
Q 008235 495 TAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMI 548 (573)
Q Consensus 495 GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~ 548 (573)
|||+|+|++|||||+|.+.++|+||+|||||.|..|.|++|+++.|...++.+.
T Consensus 299 GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred cCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987776654
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.9e-43 Score=400.91 Aligned_cols=345 Identities=11% Similarity=0.082 Sum_probs=243.3
Q ss_pred HHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE
Q 008235 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (573)
Q Consensus 183 ~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil 262 (573)
.+.+.+.+ ..+|..| ||+|.+|||.+++|+|++++|||| ||||+||++|+++++....... ....++++|||
T Consensus 19 ~~~v~~~~-~~~~~~~-----tpiQ~~Ai~~il~g~nvli~APTG-SGKTlaa~Lpil~~l~~~~~~~-~~~~~~~~LyI 90 (876)
T PRK13767 19 RPYVREWF-KEKFGTF-----TPPQRYAIPLIHEGKNVLISSPTG-SGKTLAAFLAIIDELFRLGREG-ELEDKVYCLYV 90 (876)
T ss_pred CHHHHHHH-HHccCCC-----CHHHHHHHHHHHcCCCEEEECCCC-CcHHHHHHHHHHHHHHhhcccc-CCCCCeEEEEE
Confidence 33444433 3478888 999999999999999999999999 9999999999999987543211 11247899999
Q ss_pred cccHHHHHHHHHHHhh-------hh-----cC-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCC--C
Q 008235 263 VSSQEKAAKVRSVCKP-------LK-----AF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI--D 327 (573)
Q Consensus 263 ~PtreLa~Qi~~~~~~-------l~-----~~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~--~ 327 (573)
+|||+||.|+++.+.. +. .. ++++...+|+.+...+...+.+ .++|+|+||++|..++....+ .
T Consensus 91 sPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~-~p~IlVtTPE~L~~ll~~~~~~~~ 169 (876)
T PRK13767 91 SPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKK-PPHILITTPESLAILLNSPKFREK 169 (876)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhC-CCCEEEecHHHHHHHhcChhHHHH
Confidence 9999999999876542 11 22 7788999999998877777777 799999999999888866443 4
Q ss_pred CCCccEEEEeCcccccC---cch----HHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhc-------CCceEEEcCCCc
Q 008235 328 VSGVSLLVVDRLDSLSK---GDT----LSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLL-------GSINRLSLNQSV 393 (573)
Q Consensus 328 l~~l~~lViDEad~ll~---~~~----l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~-------~~~~~i~~~~~~ 393 (573)
+.++++|||||||.|++ ... +.++....+...|++++|||+++ ...++..+.. .++..+.....
T Consensus 170 l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~- 247 (876)
T PRK13767 170 LRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFV- 247 (876)
T ss_pred HhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCC-
Confidence 78999999999999996 333 34444444578899999999987 4444443322 12212211110
Q ss_pred cccccceEEE-----EEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC------CCCeee
Q 008235 394 ASQSACIIQS-----VNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK------GYSIST 462 (573)
Q Consensus 394 ~~~~~~i~~~-----~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~------g~~~~~ 462 (573)
....+... +.... .......+...|...+.. ..++||||||+..|+.++..|... +..+.
T Consensus 248 --k~~~i~v~~p~~~l~~~~-~~~~~~~l~~~L~~~i~~-----~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~- 318 (876)
T PRK13767 248 --KPFDIKVISPVDDLIHTP-AEEISEALYETLHELIKE-----HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIG- 318 (876)
T ss_pred --ccceEEEeccCccccccc-cchhHHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHhchhhcccccee-
Confidence 00011100 00111 122233445555555543 358999999999999999999873 24454
Q ss_pred ecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCC-CcceEEEEe
Q 008235 463 GSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHT-VSGILHSFF 536 (573)
Q Consensus 463 ~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g-~~G~~i~~~ 536 (573)
.|||. |..+++.| ++|..+++++ |++. .+|||||+|++||+|+.|.++.+|+||+||+||.+ ..+.++++.
T Consensus 319 ~hHg~ls~~~R~~ve~~f-k~G~i~vLVa-Ts~L-e~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 319 AHHSSLSREVRLEVEEKL-KRGELKVVVS-STSL-ELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred eeeCCCCHHHHHHHHHHH-HcCCCeEEEE-CChH-HhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 46775 44589999 9999999887 5677 48999999999999999999999999999999874 334444443
Q ss_pred -ccccHHHHHHHHHH
Q 008235 537 -TKDDAAHAGQMIEI 550 (573)
Q Consensus 537 -~~~d~~~~~~l~~~ 550 (573)
...|......+.+.
T Consensus 396 ~~~~~l~e~~~~~~~ 410 (876)
T PRK13767 396 VDRDDLVECAVLLKK 410 (876)
T ss_pred cCchhHHHHHHHHHH
Confidence 34443333334433
No 42
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=4.2e-43 Score=386.98 Aligned_cols=309 Identities=10% Similarity=0.037 Sum_probs=234.8
Q ss_pred CCCccCCCCCCCHHHHHHHHHHhcCC-cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEE-EcccHHHHH
Q 008235 193 DGVEQDNPLFVNSWGIEFWKCYSSAK-DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF-LVSSQEKAA 270 (573)
Q Consensus 193 ~g~~~p~~~~~t~iQ~~aip~il~g~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Li-l~PtreLa~ 270 (573)
.||. | ||||.++||.++.|+ +++++|||| ||||.+|.++++.. ... ...++.|| ++||||||.
T Consensus 12 ~G~~-P-----tpiQ~~~i~~il~G~~~v~~~apTG-SGKTaa~aafll~~-~~~-------~~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 12 HGYS-P-----FPWQLSLAERFVAGQPPESCSTPTG-LGKTSIIAAWLLAV-EIG-------AKVPRRLVYVVNRRTVVD 76 (844)
T ss_pred hCCC-C-----CHHHHHHHHHHHcCCCcceEecCCC-CcccHHHHHhhccc-ccc-------ccccceEEEeCchHHHHH
Confidence 4777 8 999999999999998 577789999 99999876666532 111 13566666 669999999
Q ss_pred HHHHHHhhhhc-C-----------------------CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCC
Q 008235 271 KVRSVCKPLKA-F-----------------------GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI 326 (573)
Q Consensus 271 Qi~~~~~~l~~-~-----------------------~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~ 326 (573)
|+++.+..++. + ++++.+++||.+...|+..+.. +++|||||+ |++.++.+
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~-~p~IIVgT~----D~i~sr~L 151 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPH-RPAVIVGTV----DMIGSRLL 151 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCC-CCcEEEECH----HHHcCCcc
Confidence 99999999843 2 4889999999999999999988 899999994 67766665
Q ss_pred C----------------CCCccEEEEeCcccccC-cchHHHHHHhc--CCC---CcEEEEeccCCccHHHHHHHHhcCCc
Q 008235 327 D----------------VSGVSLLVVDRLDSLSK-GDTLSLIRQSI--SGK---PHTVVFNDCLTYTSVPAVQNLLLGSI 384 (573)
Q Consensus 327 ~----------------l~~l~~lViDEad~ll~-~~~l~~Il~~l--~~~---~q~l~~SAT~~~~~~~~~~~~l~~~~ 384 (573)
+ ++++.+|||||||.... .+.+..|+..+ ++. +|+++||||++..+..++..++.++.
T Consensus 152 ~~gYg~~~~~~pi~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~ 231 (844)
T TIGR02621 152 FSGYGCGFKSRPLHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDY 231 (844)
T ss_pred ccccccccccccchhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCc
Confidence 2 78999999999993222 78899999965 332 69999999999999988888888885
Q ss_pred eEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeec
Q 008235 385 NRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGS 464 (573)
Q Consensus 385 ~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~ 464 (573)
.+.+... .....++.+. +.+. .+.|...+...+...+... ..++||||||+..|+.++..|...++ . ++
T Consensus 232 -~i~V~~~-~l~a~ki~q~-v~v~-~e~Kl~~lv~~L~~ll~e~----g~~vLVF~NTv~~Aq~L~~~L~~~g~--~-lL 300 (844)
T TIGR02621 232 -KHPVLKK-RLAAKKIVKL-VPPS-DEKFLSTMVKELNLLMKDS----GGAILVFCRTVKHVRKVFAKLPKEKF--E-LL 300 (844)
T ss_pred -eeecccc-cccccceEEE-EecC-hHHHHHHHHHHHHHHHhhC----CCcEEEEECCHHHHHHHHHHHHhcCC--e-Ee
Confidence 5555433 2444566664 3443 3445555555554444322 47899999999999999999999887 3 35
Q ss_pred CCCH-----H-----HHHHHHHhc----CC-------CCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhcc
Q 008235 465 NCIV-----S-----HIKNSVEAD----GR-------KRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSM 523 (573)
Q Consensus 465 ~~~~-----~-----~~l~~F~~~----g~-------~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~ 523 (573)
||++ . +++++| +. +. ..++++ ||++ .|||||+. ++||++..| .++|+||+||+
T Consensus 301 HG~m~q~dR~~~~~~~il~~F-k~~~~~g~~~~~~~g~~ILVA-TdVa-erGLDId~-d~VI~d~aP--~esyIQRiGRt 374 (844)
T TIGR02621 301 TGTLRGAERDDLVKKEIFNRF-LPQMLSGSRARPQQGTVYLVC-TSAG-EVGVNISA-DHLVCDLAP--FESMQQRFGRV 374 (844)
T ss_pred eCCCCHHHHhhHHHHHHHHHH-hccccccccccccccceEEec-cchh-hhcccCCc-ceEEECCCC--HHHHHHHhccc
Confidence 8754 3 457778 54 33 345544 5888 48999986 899998877 69999999999
Q ss_pred ccCCCc-ceEEEEecc
Q 008235 524 ARHTVS-GILHSFFTK 538 (573)
Q Consensus 524 gR~g~~-G~~i~~~~~ 538 (573)
||+|+. |..++++.+
T Consensus 375 gR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 375 NRFGELQACQIAVVHL 390 (844)
T ss_pred CCCCCCCCceEEEEee
Confidence 999985 445666644
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.2e-42 Score=385.62 Aligned_cols=315 Identities=13% Similarity=0.098 Sum_probs=244.8
Q ss_pred CCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHH
Q 008235 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (573)
Q Consensus 193 ~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi 272 (573)
.||.++ +|+|.++|+.+++|+|+++++||| +|||++|++|++. .+..+|||+|+++|+.|.
T Consensus 9 fg~~~f-----r~~Q~~~i~~il~g~dvlv~~PTG-~GKTl~y~lpal~-------------~~g~~lVisPl~sL~~dq 69 (591)
T TIGR01389 9 FGYDDF-----RPGQEEIISHVLDGRDVLVVMPTG-GGKSLCYQVPALL-------------LKGLTVVISPLISLMKDQ 69 (591)
T ss_pred cCCCCC-----CHHHHHHHHHHHcCCCEEEEcCCC-ccHhHHHHHHHHH-------------cCCcEEEEcCCHHHHHHH
Confidence 588888 999999999999999999999999 9999999999983 133689999999999988
Q ss_pred HHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-----
Q 008235 273 RSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----- 344 (573)
Q Consensus 273 ~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----- 344 (573)
...++.+ |+.+..+.++.+..... ..+..+.++|+++||++|........+...++.+|||||||++.+
T Consensus 70 ~~~l~~~---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~f 146 (591)
T TIGR01389 70 VDQLRAA---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDF 146 (591)
T ss_pred HHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCcc
Confidence 8877765 88888888888766543 334455799999999999654333345567899999999999986
Q ss_pred cc---hHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhc--CCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHH
Q 008235 345 GD---TLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLL--GSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419 (573)
Q Consensus 345 ~~---~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~--~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 419 (573)
.+ .+..+...++ ..++++||||.+..+...+..++. ++. .+ +.. ....++...+.. ...+...+.+
T Consensus 147 rp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~-~~-~~~---~~r~nl~~~v~~---~~~~~~~l~~ 217 (591)
T TIGR01389 147 RPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADAN-EF-ITS---FDRPNLRFSVVK---KNNKQKFLLD 217 (591)
T ss_pred HHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCC-eE-ecC---CCCCCcEEEEEe---CCCHHHHHHH
Confidence 22 3334444444 445999999999988776666664 333 22 221 122334333322 2345555555
Q ss_pred HHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccC
Q 008235 420 VLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHIS 494 (573)
Q Consensus 420 ~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~r 494 (573)
+|... . ..++||||+|+..|+.++..|...|+++..+ |+. +..+++.| ..|...++++ |++. .+
T Consensus 218 ~l~~~----~---~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~-H~~l~~~~R~~i~~~F-~~g~~~vlVa-T~a~-~~ 286 (591)
T TIGR01389 218 YLKKH----R---GQSGIIYASSRKKVEELAERLESQGISALAY-HAGLSNKVRAENQEDF-LYDDVKVMVA-TNAF-GM 286 (591)
T ss_pred HHHhc----C---CCCEEEEECcHHHHHHHHHHHHhCCCCEEEE-ECCCCHHHHHHHHHHH-HcCCCcEEEE-echh-hc
Confidence 55442 2 4689999999999999999999999998865 653 45589999 8999999888 5566 37
Q ss_pred CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHH
Q 008235 495 TAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIE 549 (573)
Q Consensus 495 GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~ 549 (573)
|||+|+|++||||++|.+.+.|+||+||+||.|..|.|++|+++.|...++.+++
T Consensus 287 GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 287 GIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred cCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998877665543
No 44
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.7e-42 Score=388.46 Aligned_cols=328 Identities=14% Similarity=0.096 Sum_probs=241.9
Q ss_pred ccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHH-HhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhch
Q 008235 169 CEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKC-YSSAKDILETSGSSSTIVQIAWIVATAADSIARK 247 (573)
Q Consensus 169 ~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~-il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~ 247 (573)
++++++|+.+ .+++...||..+ +|+|.+|++. ++.|+|++++|||| ||||++|.+|++..+.
T Consensus 3 ~~~l~lp~~~--------~~~l~~~g~~~l-----~p~Q~~ai~~~~~~g~nvlv~APTG-SGKTlia~lail~~l~--- 65 (737)
T PRK02362 3 IAELPLPEGV--------IEFYEAEGIEEL-----YPPQAEAVEAGLLDGKNLLAAIPTA-SGKTLIAELAMLKAIA--- 65 (737)
T ss_pred hhhcCCCHHH--------HHHHHhCCCCcC-----CHHHHHHHHHHHhCCCcEEEECCCc-chHHHHHHHHHHHHHh---
Confidence 4556666655 345666899998 9999999998 77899999999999 9999999999999885
Q ss_pred hccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCC
Q 008235 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327 (573)
Q Consensus 248 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~ 327 (573)
.+.++|||+||++||.|+++.++.+..+|++++.++|+...... .+. .++|+|+||+++..+++++...
T Consensus 66 -------~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~--~l~--~~~IiV~Tpek~~~llr~~~~~ 134 (737)
T PRK02362 66 -------RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE--WLG--DNDIIVATSEKVDSLLRNGAPW 134 (737)
T ss_pred -------cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc--ccC--CCCEEEECHHHHHHHHhcChhh
Confidence 25689999999999999999999887679999999998765432 232 5899999999999999877667
Q ss_pred CCCccEEEEeCcccccC---cchHHHHHHhc---CCCCcEEEEeccCCccHHHHHHHHhcC--------Cce-EEEcCCC
Q 008235 328 VSGVSLLVVDRLDSLSK---GDTLSLIRQSI---SGKPHTVVFNDCLTYTSVPAVQNLLLG--------SIN-RLSLNQS 392 (573)
Q Consensus 328 l~~l~~lViDEad~ll~---~~~l~~Il~~l---~~~~q~l~~SAT~~~~~~~~~~~~l~~--------~~~-~i~~~~~ 392 (573)
++++++|||||+|.+.+ ...++.++..+ .++.|++++|||+++ ..+++.. +.. |+. ...+...
T Consensus 135 l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~w-l~~~~~~~~~rpv~l~~~v~~~ 212 (737)
T PRK02362 135 LDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADW-LDAELVDSEWRPIDLREGVFYG 212 (737)
T ss_pred hhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHH-hCCCcccCCCCCCCCeeeEecC
Confidence 89999999999999987 55666665554 578999999999986 4455443 332 110 0000000
Q ss_pred ccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCC---------------
Q 008235 393 VASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKG--------------- 457 (573)
Q Consensus 393 ~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g--------------- 457 (573)
....... .+..+.+........ .+...+.. ++++||||+|+..|+.++..|....
T Consensus 213 ~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 282 (737)
T PRK02362 213 GAIHFDD-SQREVEVPSKDDTLN----LVLDTLEE-----GGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAEL 282 (737)
T ss_pred Ceecccc-ccccCCCccchHHHH----HHHHHHHc-----CCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 0000000 111111111122222 23222222 5699999999999999988876431
Q ss_pred ---------------------CCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEe----C
Q 008235 458 ---------------------YSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIV----P 507 (573)
Q Consensus 458 ---------------------~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~----~ 507 (573)
..+ ..||+. |..+++.| ++|..+++++ |++. ++|+|+|.+++||+ |
T Consensus 283 ~~~l~~~~~~~~~~~L~~~l~~gv-a~hHagl~~~eR~~ve~~F-r~G~i~VLva-T~tl-a~GvnlPa~~VVI~~~~~y 358 (737)
T PRK02362 283 AEEIREVSDTETSKDLADCVAKGA-AFHHAGLSREHRELVEDAF-RDRLIKVISS-TPTL-AAGLNLPARRVIIRDYRRY 358 (737)
T ss_pred HHHHHhccCccccHHHHHHHHhCE-EeecCCCCHHHHHHHHHHH-HcCCCeEEEe-chhh-hhhcCCCceEEEEecceee
Confidence 122 346764 55589999 9999999888 5677 58999999999998 7
Q ss_pred C-----CCCCHHHHHHHHhccccCCCc--ceEEEEecccc
Q 008235 508 D-----FIISMKNYVEILTSMARHTVS--GILHSFFTKDD 540 (573)
Q Consensus 508 d-----~P~s~~~YiqR~GR~gR~g~~--G~~i~~~~~~d 540 (573)
| .|.+..+|+||+|||||.|.. |.|++++.+.+
T Consensus 359 d~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 359 DGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred cCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 7 689999999999999999965 99999987643
No 45
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=8.4e-42 Score=395.53 Aligned_cols=304 Identities=13% Similarity=0.058 Sum_probs=242.5
Q ss_pred HHHHHHHHhC-CCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE
Q 008235 184 NAIENAMRHD-GVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (573)
Q Consensus 184 ~~i~~~l~~~-g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil 262 (573)
+.+.+.+.+. |+ .| |++|..++|.++.|+|++++|||| ||||+ |++|++..+.. .++++|||
T Consensus 67 ~~~~~~f~~~~G~-~p-----t~iQ~~~i~~il~g~dv~i~ApTG-sGKT~-f~l~~~~~l~~---------~g~~alIL 129 (1176)
T PRK09401 67 KEFEKFFKKKTGS-KP-----WSLQRTWAKRLLLGESFAIIAPTG-VGKTT-FGLVMSLYLAK---------KGKKSYII 129 (1176)
T ss_pred HHHHHHHHHhcCC-CC-----cHHHHHHHHHHHCCCcEEEEcCCC-CCHHH-HHHHHHHHHHh---------cCCeEEEE
Confidence 3444445444 44 77 999999999999999999999999 99995 77776655532 37899999
Q ss_pred cccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCC-----HHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEE
Q 008235 263 VSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAA-----IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVV 336 (573)
Q Consensus 263 ~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~-----~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lVi 336 (573)
+|||+||.|+++.++.+.. .++.+..++||.+ ...+...+.++.++|+|+||++|.+++. .+....+++|||
T Consensus 130 ~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVv 207 (1176)
T PRK09401 130 FPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFV 207 (1176)
T ss_pred eccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEE
Confidence 9999999999999999844 5788777777654 2334455666569999999999999886 455677999999
Q ss_pred eCcccccC---------------cchHHHHHHhcCC------------------------CCcEEEEeccCCcc-HHHHH
Q 008235 337 DRLDSLSK---------------GDTLSLIRQSISG------------------------KPHTVVFNDCLTYT-SVPAV 376 (573)
Q Consensus 337 DEad~ll~---------------~~~l~~Il~~l~~------------------------~~q~l~~SAT~~~~-~~~~~ 376 (573)
||||+|++ .+++..++..++. .+|+++||||+++. +..
T Consensus 208 DEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~-- 285 (1176)
T PRK09401 208 DDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV-- 285 (1176)
T ss_pred EChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH--
Confidence 99999984 2467777777654 68999999999874 332
Q ss_pred HHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhh---HHHHHHHH
Q 008235 377 QNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSK---FQNLVSTL 453 (573)
Q Consensus 377 ~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~---~~~l~~~L 453 (573)
.++.++. .+.++.. .....+|.|.++.++ ++...|.+++..+ +.++||||+++.. |+.++..|
T Consensus 286 -~l~~~ll-~~~v~~~-~~~~rnI~~~yi~~~---~k~~~L~~ll~~l--------~~~~LIFv~t~~~~~~ae~l~~~L 351 (1176)
T PRK09401 286 -KLFRELL-GFEVGSP-VFYLRNIVDSYIVDE---DSVEKLVELVKRL--------GDGGLIFVPSDKGKEYAEELAEYL 351 (1176)
T ss_pred -HHhhccc-eEEecCc-ccccCCceEEEEEcc---cHHHHHHHHHHhc--------CCCEEEEEecccChHHHHHHHHHH
Confidence 2345554 4556554 345678999988775 4666666776554 3589999999888 99999999
Q ss_pred HHCCCCeeeecCCCHHHHHHHHHhcCCCCCeEEE---EeccccCCCccCC-CCEEEeCCCCC------CHHHHHHHHhcc
Q 008235 454 KCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSM---IDKDHISTAELEE-YEVVIVPDFII------SMKNYVEILTSM 523 (573)
Q Consensus 454 ~~~g~~~~~~~~~~~~~~l~~F~~~g~~~~l~~l---vd~~s~rGlDip~-v~~VI~~d~P~------s~~~YiqR~GR~ 523 (573)
...|+++.. .||++...+++| ++|+.++|+++ +|++ +||||+|+ |++|||||+|. ..+.|.||+||+
T Consensus 352 ~~~gi~v~~-~hg~l~~~l~~F-~~G~~~VLVatas~tdv~-aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~ 428 (1176)
T PRK09401 352 EDLGINAEL-AISGFERKFEKF-EEGEVDVLVGVASYYGVL-VRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRL 428 (1176)
T ss_pred HHCCCcEEE-EeCcHHHHHHHH-HCCCCCEEEEecCCCCce-eecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHH
Confidence 999999986 589888888999 99999999885 4788 59999999 89999999998 678999999999
Q ss_pred cc
Q 008235 524 AR 525 (573)
Q Consensus 524 gR 525 (573)
..
T Consensus 429 ~~ 430 (1176)
T PRK09401 429 LS 430 (1176)
T ss_pred Hh
Confidence 74
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1e-40 Score=378.18 Aligned_cols=303 Identities=9% Similarity=0.033 Sum_probs=234.6
Q ss_pred CCCCHHHHHHHHHHhcC------CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHH
Q 008235 201 LFVNSWGIEFWKCYSSA------KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g------~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~ 274 (573)
+.+||+|.+||+.++++ +|++++|||| ||||++|++|++..+. .+.+++||+||++||.|+++
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTG-sGKT~val~a~l~al~----------~g~qvlvLvPT~~LA~Q~~~ 518 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVG-FGKTEVAMRAAFKAVL----------DGKQVAVLVPTTLLAQQHFE 518 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCC-ccHHHHHHHHHHHHHH----------hCCeEEEEeCcHHHHHHHHH
Confidence 33499999999999985 7999999999 9999999999998775 36789999999999999999
Q ss_pred HHhhh-hcCCcEEEEeCCCCCHHH---HHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHH
Q 008235 275 VCKPL-KAFGIHTVSLHPGAAIDH---QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSL 350 (573)
Q Consensus 275 ~~~~l-~~~~i~~~~~~gg~~~~~---~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~ 350 (573)
.++.+ ..+++++..++|+.+..+ ....+..+.++||||||.. + .+.+.++++.+|||||+|++. .....
T Consensus 519 ~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVIDEahrfg--v~~~~ 591 (926)
T TIGR00580 519 TFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLIIDEEQRFG--VKQKE 591 (926)
T ss_pred HHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEeecccccc--hhHHH
Confidence 99985 667899999998877543 3445666579999999942 2 345778999999999999974 33445
Q ss_pred HHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCC
Q 008235 351 IRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFH 430 (573)
Q Consensus 351 Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~ 430 (573)
.+..++.++|+++||||+.+....++...+.++. .+...+. ....+.+.+.... . ..+...+...+..
T Consensus 592 ~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s-~I~~~p~---~R~~V~t~v~~~~-~----~~i~~~i~~el~~--- 659 (926)
T TIGR00580 592 KLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLS-IIATPPE---DRLPVRTFVMEYD-P----ELVREAIRRELLR--- 659 (926)
T ss_pred HHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcE-EEecCCC---CccceEEEEEecC-H----HHHHHHHHHHHHc---
Confidence 5666778899999999987765555544555553 4554432 1223555544332 1 1122222222222
Q ss_pred CCCCcEEEEecChhhHHHHHHHHHHC--CCCeeeecCCCH-----HHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCE
Q 008235 431 SEPLKVLYIVGKDSKFQNLVSTLKCK--GYSISTGSNCIV-----SHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEV 503 (573)
Q Consensus 431 ~~~~k~lIF~~s~~~~~~l~~~L~~~--g~~~~~~~~~~~-----~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~ 503 (573)
+++++||||++..++.++..|... ++.+.. +||++ .+++++| ++|+..+|++ ||+.+ +|||||+|++
T Consensus 660 --g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~-lHG~m~~~eRe~im~~F-~~Gk~~ILVa-T~iie-~GIDIp~v~~ 733 (926)
T TIGR00580 660 --GGQVFYVHNRIESIEKLATQLRELVPEARIAI-AHGQMTENELEEVMLEF-YKGEFQVLVC-TTIIE-TGIDIPNANT 733 (926)
T ss_pred --CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEE-ecCCCCHHHHHHHHHHH-HcCCCCEEEE-CChhh-cccccccCCE
Confidence 569999999999999999999885 667765 58864 4589999 9999999888 56774 8999999999
Q ss_pred EEeCCCCC-CHHHHHHHHhccccCCCcceEEEEeccc
Q 008235 504 VIVPDFII-SMKNYVEILTSMARHTVSGILHSFFTKD 539 (573)
Q Consensus 504 VI~~d~P~-s~~~YiqR~GR~gR~g~~G~~i~~~~~~ 539 (573)
||++++|. ...+|+||+||+||.|+.|.|++|+.+.
T Consensus 734 VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 734 IIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred EEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99999986 6789999999999999999999998653
No 47
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-40 Score=375.33 Aligned_cols=325 Identities=13% Similarity=0.113 Sum_probs=242.6
Q ss_pred HHHHHHHHhCCCccCCCCCCCHHHHHHHHH-HhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE
Q 008235 184 NAIENAMRHDGVEQDNPLFVNSWGIEFWKC-YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (573)
Q Consensus 184 ~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~-il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil 262 (573)
+.+.+.+.+.||..+ +|+|.++++. ++.|+|++++|||| ||||++|.+|++.++... +.++|||
T Consensus 10 ~~~~~~l~~~g~~~l-----~~~Q~~ai~~~~~~g~nvlv~apTG-sGKT~~~~l~il~~l~~~---------~~~~l~l 74 (720)
T PRK00254 10 ERIKRVLKERGIEEL-----YPPQAEALKSGVLEGKNLVLAIPTA-SGKTLVAEIVMVNKLLRE---------GGKAVYL 74 (720)
T ss_pred HHHHHHHHhCCCCCC-----CHHHHHHHHHHHhCCCcEEEECCCC-cHHHHHHHHHHHHHHHhc---------CCeEEEE
Confidence 344566777899999 9999999986 78999999999999 999999999999887642 5689999
Q ss_pred cccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccc
Q 008235 263 VSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342 (573)
Q Consensus 263 ~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~l 342 (573)
+||++||.|+++.+..+..+|+++..++|+.+.... .+ . .++|+|+||+++..++.++...++++++|||||+|.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~~-~-~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE--WL-G-KYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh--hh-c-cCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 999999999999999887679999999998775432 23 2 5899999999999998877777899999999999999
Q ss_pred cC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccc-eEEEEEEcCCh-hHH-HHH
Q 008235 343 SK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSAC-IIQSVNVCASD-EEK-ILK 416 (573)
Q Consensus 343 l~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~-~~k-~~~ 416 (573)
.+ ...++.++..+..+.|++++|||+++ ..+++. |+..+. ....... ...... +.+.+...... ..+ ...
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~-~~~~~rp-v~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAEL-VVSDWRP-VKLRKGVFYQGFLFWEDGKIERFPNS 226 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCcc-ccCCCCC-CcceeeEecCCeeeccCcchhcchHH
Confidence 86 77889999999889999999999987 566665 555432 1111110 000001 11112222111 111 122
Q ss_pred HHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC---------------------------------CCCeeee
Q 008235 417 GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK---------------------------------GYSISTG 463 (573)
Q Consensus 417 l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~---------------------------------g~~~~~~ 463 (573)
+...+...+.. +.++||||+|+..|+.++..|... ...+. .
T Consensus 227 ~~~~~~~~i~~-----~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~-~ 300 (720)
T PRK00254 227 WESLVYDAVKK-----GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVA-F 300 (720)
T ss_pred HHHHHHHHHHh-----CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEE-E
Confidence 22333333332 469999999999998887666321 11233 4
Q ss_pred cCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEe-------CCCCC-CHHHHHHHHhccccCC--C
Q 008235 464 SNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIV-------PDFII-SMKNYVEILTSMARHT--V 528 (573)
Q Consensus 464 ~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~-------~d~P~-s~~~YiqR~GR~gR~g--~ 528 (573)
||+. |..+.+.| ++|..+++++ |++. ++|+|+|.+++||+ |+.|. ++.+|+||+|||||.| .
T Consensus 301 hHagl~~~eR~~ve~~F-~~G~i~VLva-T~tL-a~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~ 377 (720)
T PRK00254 301 HHAGLGRTERVLIEDAF-REGLIKVITA-TPTL-SAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDE 377 (720)
T ss_pred eCCCCCHHHHHHHHHHH-HCCCCeEEEe-CcHH-hhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCC
Confidence 6774 45589999 9999999888 5566 48999999999994 66654 5789999999999976 5
Q ss_pred cceEEEEecccc
Q 008235 529 SGILHSFFTKDD 540 (573)
Q Consensus 529 ~G~~i~~~~~~d 540 (573)
.|.+++|+.+.+
T Consensus 378 ~G~~ii~~~~~~ 389 (720)
T PRK00254 378 VGEAIIVATTEE 389 (720)
T ss_pred CceEEEEecCcc
Confidence 799999988755
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=5.3e-40 Score=379.84 Aligned_cols=303 Identities=10% Similarity=0.015 Sum_probs=236.3
Q ss_pred CCCCCHHHHHHHHHHhcC------CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHH
Q 008235 200 PLFVNSWGIEFWKCYSSA------KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (573)
Q Consensus 200 ~~~~t~iQ~~aip~il~g------~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~ 273 (573)
++.+|++|.+||+.++.+ +|++++++|| ||||++|+.+++..+. .+.+++||+||++||.|++
T Consensus 598 ~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TG-sGKT~val~aa~~~~~----------~g~qvlvLvPT~eLA~Q~~ 666 (1147)
T PRK10689 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVG-FGKTEVAMRAAFLAVE----------NHKQVAVLVPTTLLAQQHY 666 (1147)
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCC-cCHHHHHHHHHHHHHH----------cCCeEEEEeCcHHHHHHHH
Confidence 455699999999999997 8999999999 9999999988876543 4789999999999999999
Q ss_pred HHHhh-hhcCCcEEEEeCCCCCHHHHHHH---hhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHH
Q 008235 274 SVCKP-LKAFGIHTVSLHPGAAIDHQITG---LRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLS 349 (573)
Q Consensus 274 ~~~~~-l~~~~i~~~~~~gg~~~~~~~~~---l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~ 349 (573)
+.+.. +..+++++.+++|+.+...+... +..+.++||||||+.| ...+.++++++|||||+|++. ... .
T Consensus 667 ~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrfG-~~~-~ 739 (1147)
T PRK10689 667 DNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRFG-VRH-K 739 (1147)
T ss_pred HHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhcc-hhH-H
Confidence 99987 46668899899998887766543 4445799999999743 245678899999999999984 222 4
Q ss_pred HHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCC
Q 008235 350 LIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHF 429 (573)
Q Consensus 350 ~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~ 429 (573)
..+..++.++|+++||||+.+....++...+.++. .+...+.. ...+.+.+........+. .++..+..
T Consensus 740 e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~-~I~~~p~~---r~~v~~~~~~~~~~~~k~----~il~el~r--- 808 (1147)
T PRK10689 740 ERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLS-IIATPPAR---RLAVKTFVREYDSLVVRE----AILREILR--- 808 (1147)
T ss_pred HHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcE-EEecCCCC---CCCceEEEEecCcHHHHH----HHHHHHhc---
Confidence 45677788999999999988877788877788885 56554321 234555555443222222 23333322
Q ss_pred CCCCCcEEEEecChhhHHHHHHHHHHC--CCCeeeecCCCH-----HHHHHHHHhcCCCCCeEEEEeccccCCCccCCCC
Q 008235 430 HSEPLKVLYIVGKDSKFQNLVSTLKCK--GYSISTGSNCIV-----SHIKNSVEADGRKRPAVSMIDKDHISTAELEEYE 502 (573)
Q Consensus 430 ~~~~~k~lIF~~s~~~~~~l~~~L~~~--g~~~~~~~~~~~-----~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~ 502 (573)
.++++||||++..++.++..|... ++.+.. .||++ .+++.+| ++|+..+|++ ||+. .+|||||+|+
T Consensus 809 ---~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~-lHG~m~q~eRe~im~~F-r~Gk~~VLVa-TdIi-erGIDIP~v~ 881 (1147)
T PRK10689 809 ---GGQVYYLYNDVENIQKAAERLAELVPEARIAI-GHGQMRERELERVMNDF-HHQRFNVLVC-TTII-ETGIDIPTAN 881 (1147)
T ss_pred ---CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEE-EeCCCCHHHHHHHHHHH-HhcCCCEEEE-Cchh-hcccccccCC
Confidence 468999999999999999999887 677775 47764 4589999 9999999988 5788 4899999999
Q ss_pred EEEeCCCC-CCHHHHHHHHhccccCCCcceEEEEecc
Q 008235 503 VVIVPDFI-ISMKNYVEILTSMARHTVSGILHSFFTK 538 (573)
Q Consensus 503 ~VI~~d~P-~s~~~YiqR~GR~gR~g~~G~~i~~~~~ 538 (573)
+||.++.. .+...|+||+||+||.|+.|.|++++.+
T Consensus 882 ~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred EEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99944332 2445799999999999999999988754
No 49
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=3.3e-40 Score=389.52 Aligned_cols=331 Identities=11% Similarity=0.019 Sum_probs=254.8
Q ss_pred HHHHHHHHHh-CCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEE
Q 008235 183 LNAIENAMRH-DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (573)
Q Consensus 183 ~~~i~~~l~~-~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Li 261 (573)
.+.+.+.|.+ .|| .| |++|.++||.+++|+|++++|||| ||||++++++++.... .+.++||
T Consensus 65 ~~~~~~~f~~~~G~-~p-----t~iQ~~~i~~il~G~d~li~APTG-sGKTl~~~~~al~~~~----------~g~~aLV 127 (1638)
T PRK14701 65 VEEFEEFFEKITGF-EF-----WSIQKTWAKRILRGKSFSIVAPTG-MGKSTFGAFIALFLAL----------KGKKCYI 127 (1638)
T ss_pred HHHHHHHHHHhhCC-CC-----CHHHHHHHHHHHcCCCEEEEEcCC-CCHHHHHHHHHHHHHh----------cCCeEEE
Confidence 3445555655 688 68 999999999999999999999999 9999966655553321 3679999
Q ss_pred EcccHHHHHHHHHHHhhhhc---CCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEE
Q 008235 262 LVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (573)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~~---~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lV 335 (573)
|+|||+|+.|+.+.++.+.. .++.++.++||.+...+. ..+.++.++|||+||++|.+++... . ..++++||
T Consensus 128 l~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iV 205 (1638)
T PRK14701 128 ILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIF 205 (1638)
T ss_pred EECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEE
Confidence 99999999999999999843 367888899999877663 4556656999999999999877642 2 27799999
Q ss_pred EeCcccccC--------------cchHHH----HHH----------------------hcCCCCc-EEEEeccCCccHHH
Q 008235 336 VDRLDSLSK--------------GDTLSL----IRQ----------------------SISGKPH-TVVFNDCLTYTSVP 374 (573)
Q Consensus 336 iDEad~ll~--------------~~~l~~----Il~----------------------~l~~~~q-~l~~SAT~~~~~~~ 374 (573)
|||||+|++ .+++.. |+. .++..+| +++||||++.. .
T Consensus 206 VDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~ 283 (1638)
T PRK14701 206 VDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--G 283 (1638)
T ss_pred EECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--h
Confidence 999999973 223322 321 2345566 57799999963 1
Q ss_pred HHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhh---HHHHHH
Q 008235 375 AVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSK---FQNLVS 451 (573)
Q Consensus 375 ~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~---~~~l~~ 451 (573)
....++.++. .+.++.. .....++.|.++.++ ...+ ..|..++... +..+||||+|+.. |+.++.
T Consensus 284 ~~~~l~~~~l-~f~v~~~-~~~lr~i~~~yi~~~-~~~k-~~L~~ll~~~--------g~~gIVF~~t~~~~e~ae~la~ 351 (1638)
T PRK14701 284 DRVKLYRELL-GFEVGSG-RSALRNIVDVYLNPE-KIIK-EHVRELLKKL--------GKGGLIFVPIDEGAEKAEEIEK 351 (1638)
T ss_pred HHHHHhhcCe-EEEecCC-CCCCCCcEEEEEECC-HHHH-HHHHHHHHhC--------CCCeEEEEeccccchHHHHHHH
Confidence 1224456675 5666654 356678999988775 3444 4566666543 3578999999886 589999
Q ss_pred HHHHCCCCeeeecCCCHHHHHHHHHhcCCCCCeEEEE---eccccCCCccCC-CCEEEeCCCCC---CHHHHHHHH----
Q 008235 452 TLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMI---DKDHISTAELEE-YEVVIVPDFII---SMKNYVEIL---- 520 (573)
Q Consensus 452 ~L~~~g~~~~~~~~~~~~~~l~~F~~~g~~~~l~~lv---d~~s~rGlDip~-v~~VI~~d~P~---s~~~YiqR~---- 520 (573)
.|...|+++.. +|++|.+++++| ++|+..+|+++. |++ +||||+|+ |++|||||+|. +++.|.|..
T Consensus 352 ~L~~~Gi~a~~-~h~~R~~~l~~F-~~G~~~VLVaT~s~~gva-aRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~ 428 (1638)
T PRK14701 352 YLLEDGFKIEL-VSAKNKKGFDLF-EEGEIDYLIGVATYYGTL-VRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRIL 428 (1638)
T ss_pred HHHHCCCeEEE-ecchHHHHHHHH-HcCCCCEEEEecCCCCee-EecCccCCccCEEEEeCCCCCCcchhhcccchhhhh
Confidence 99999999986 588899999999 999999999842 577 59999999 99999999999 999888876
Q ss_pred ---------hccccCCCcceEEEEeccccHHHHHHHHH
Q 008235 521 ---------TSMARHTVSGILHSFFTKDDAAHAGQMIE 549 (573)
Q Consensus 521 ---------GR~gR~g~~G~~i~~~~~~d~~~~~~l~~ 549 (573)
||+||.|..+.+++.+.+.+..+++.+.+
T Consensus 429 ~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~ 466 (1638)
T PRK14701 429 GLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILK 466 (1638)
T ss_pred cchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhc
Confidence 99999998888886666777666665543
No 50
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=7.2e-40 Score=359.73 Aligned_cols=311 Identities=11% Similarity=0.009 Sum_probs=232.1
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCchhHHHH---------HHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHH
Q 008235 205 SWGIEFWKCYSSAKDILETSGSSSTIVQIA---------WIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (573)
Q Consensus 205 ~iQ~~aip~il~g~dvl~~A~TG~SGKTla---------f~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~ 275 (573)
.+|.++++.++.|+|+|++|+|| ||||.+ |++|.+..+..... ...+.+++|++||||||.|+...
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TG-SGKTtqvPq~l~~~~flf~~l~~l~~~~~----~~~~~~ilvt~PrreLa~qi~~~ 241 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTG-VGKTSQVPKLLLWFNYLFGGFDNLDKIDP----NFIERPIVLSLPRVALVRLHSIT 241 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCC-CCchhHHHHHHHHhhhccchhhhhhhccc----ccCCcEEEEECcHHHHHHHHHHH
Confidence 37999999999999999999999 999997 55566655532110 11356899999999999999998
Q ss_pred Hhhh-hc---CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-cchHHH
Q 008235 276 CKPL-KA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSL 350 (573)
Q Consensus 276 ~~~l-~~---~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-~~~l~~ 350 (573)
+... +. .++.+.+.+||... .+.....+ +.+|+|+|++.. ...++++++|||||||.+.. .+.+..
T Consensus 242 i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k-~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~DllL~ 312 (675)
T PHA02653 242 LLKSLGFDEIDGSPISLKYGSIPD-ELINTNPK-PYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIGDIIIA 312 (675)
T ss_pred HHHHhCccccCCceEEEEECCcch-HHhhcccC-CCCEEEEeCccc-------ccccccCCEEEccccccCccchhHHHH
Confidence 8764 22 26778889999873 32233333 679999997631 13578999999999999987 666666
Q ss_pred HHHhcC-CCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCC---------hhHHHHHHHHH
Q 008235 351 IRQSIS-GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCAS---------DEEKILKGIQV 420 (573)
Q Consensus 351 Il~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~---------~~~k~~~l~~~ 420 (573)
++..+. ..+|+++||||++.++..+ ..|+.+|. .+.+.. .+...|++.+..... ...+. .+...
T Consensus 313 llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~-~I~I~g---rt~~pV~~~yi~~~~~~~~~~~y~~~~k~-~~l~~ 386 (675)
T PHA02653 313 VARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPA-FVHIPG---GTLFPISEVYVKNKYNPKNKRAYIEEEKK-NIVTA 386 (675)
T ss_pred HHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCc-EEEeCC---CcCCCeEEEEeecCcccccchhhhHHHHH-HHHHH
Confidence 665543 4469999999999888776 57888885 666653 233567777764321 11222 22233
Q ss_pred HHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC--CCCeeeecCCCHHH---HHHHHHhcCCCCCeEEEEeccccCC
Q 008235 421 LDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK--GYSISTGSNCIVSH---IKNSVEADGRKRPAVSMIDKDHIST 495 (573)
Q Consensus 421 L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~--g~~~~~~~~~~~~~---~l~~F~~~g~~~~l~~lvd~~s~rG 495 (573)
+..... .. .+.+||||+++.+|+.+++.|... ++.+.. +||++++ ++++|.++|+.+++++ ||++ .||
T Consensus 387 L~~~~~-~~---~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~-LHG~Lsq~eq~l~~ff~~gk~kILVA-TdIA-ERG 459 (675)
T PHA02653 387 LKKYTP-PK---GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYI-IHGKVPNIDEILEKVYSSKNPSIIIS-TPYL-ESS 459 (675)
T ss_pred HHHhhc-cc---CCcEEEEECcHHHHHHHHHHHHhhcCCceEEe-ccCCcCHHHHHHHHHhccCceeEEec-cChh-hcc
Confidence 333211 11 468999999999999999999887 678876 4887654 5677745788888877 7899 499
Q ss_pred CccCCCCEEEeCC---CCC---------CHHHHHHHHhccccCCCcceEEEEeccccHHH
Q 008235 496 AELEEYEVVIVPD---FII---------SMKNYVEILTSMARHTVSGILHSFFTKDDAAH 543 (573)
Q Consensus 496 lDip~v~~VI~~d---~P~---------s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~ 543 (573)
||||+|++||++| .|. |..+|+||+|||||. ++|.|+.|+++.+...
T Consensus 460 IDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 460 VTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKP 518 (675)
T ss_pred ccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHH
Confidence 9999999999999 666 889999999999999 7999999999876543
No 51
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=357.17 Aligned_cols=343 Identities=13% Similarity=0.119 Sum_probs=257.3
Q ss_pred HHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE
Q 008235 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (573)
Q Consensus 183 ~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil 262 (573)
...+++.+.+. |..| ||.|.+|||.+.+|+|+|++|||| ||||+|..||++..+.... .+....+..+|||
T Consensus 9 ~~~v~~~~~~~-~~~~-----t~~Q~~a~~~i~~G~nvLiiAPTG-sGKTeAAfLpil~~l~~~~--~~~~~~~i~~lYI 79 (814)
T COG1201 9 DPRVREWFKRK-FTSL-----TPPQRYAIPEIHSGENVLIIAPTG-SGKTEAAFLPVINELLSLG--KGKLEDGIYALYI 79 (814)
T ss_pred CHHHHHHHHHh-cCCC-----CHHHHHHHHHHhCCCceEEEcCCC-CChHHHHHHHHHHHHHhcc--CCCCCCceEEEEe
Confidence 33444555555 8888 999999999999999999999999 9999999999999998873 1122257899999
Q ss_pred cccHHHHHHHHHHHhhh-hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC--CCCCCccEEEEeCc
Q 008235 263 VSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA--IDVSGVSLLVVDRL 339 (573)
Q Consensus 263 ~PtreLa~Qi~~~~~~l-~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~--~~l~~l~~lViDEa 339 (573)
+|.|+|+..+...+..+ ..+|+.+..-+|.++..+..+.+++ .|||||+||+.|.-++.... -.|.+++++||||.
T Consensus 80 sPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~-PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEi 158 (814)
T COG1201 80 SPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKN-PPHILITTPESLAILLNSPKFRELLRDVRYVIVDEI 158 (814)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCC-CCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehh
Confidence 99999999999999887 5569999999999988877777777 89999999999988776643 34899999999999
Q ss_pred ccccC-------cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcC--CceEEEcCCCccccccceEEEEEEcCCh
Q 008235 340 DSLSK-------GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLG--SINRLSLNQSVASQSACIIQSVNVCASD 410 (573)
Q Consensus 340 d~ll~-------~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~--~~~~i~~~~~~~~~~~~i~~~~~~~~~~ 410 (573)
|.+.+ .-.++++....+ +.|.+++|||..+ ...+++.+... +...+.+... ......+......
T Consensus 159 Hel~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~-----k~~~i~v~~p~~~ 231 (814)
T COG1201 159 HALAESKRGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAA-----KKLEIKVISPVED 231 (814)
T ss_pred hhhhccccchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccC-----CcceEEEEecCCc
Confidence 99987 334445545555 8999999999985 56666666554 4445555432 2233333332211
Q ss_pred ----hHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCH-----HHHHHHHHhcCCC
Q 008235 411 ----EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIV-----SHIKNSVEADGRK 481 (573)
Q Consensus 411 ----~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~-----~~~l~~F~~~g~~ 481 (573)
..-...++..+..+.+.+ ..+|||+||+..|+.++..|+..+......|||.. ..+.++| ++|..
T Consensus 232 ~~~~~~~~~~~~~~i~~~v~~~-----~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~l-k~G~l 305 (814)
T COG1201 232 LIYDEELWAALYERIAELVKKH-----RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERL-KEGEL 305 (814)
T ss_pred cccccchhHHHHHHHHHHHhhc-----CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHH-hcCCc
Confidence 112233445555555543 49999999999999999999998733334588753 3478999 88887
Q ss_pred CCeEEEEeccccC-CCccCCCCEEEeCCCCCCHHHHHHHHhcccc-CCCcceEEEEecc-ccHHHHHHHHHHH
Q 008235 482 RPAVSMIDKDHIS-TAELEEYEVVIVPDFIISMKNYVEILTSMAR-HTVSGILHSFFTK-DDAAHAGQMIEIL 551 (573)
Q Consensus 482 ~~l~~lvd~~s~r-GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR-~g~~G~~i~~~~~-~d~~~~~~l~~~l 551 (573)
+.+++ ++|+. ||||.+|++||||+-|+++..++||+||+|+ .|....++.+... .|.-....+.+..
T Consensus 306 ravV~---TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a 375 (814)
T COG1201 306 KAVVA---TSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLA 375 (814)
T ss_pred eEEEE---ccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHH
Confidence 77655 55566 9999999999999999999999999999995 4555666655544 3433333344433
No 52
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.6e-39 Score=359.28 Aligned_cols=304 Identities=9% Similarity=0.051 Sum_probs=227.7
Q ss_pred CCCCCCHHHHHHHHHHhcC------CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHH
Q 008235 199 NPLFVNSWGIEFWKCYSSA------KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (573)
Q Consensus 199 ~~~~~t~iQ~~aip~il~g------~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi 272 (573)
.++.+|++|.+|++.+..+ .|+++++||| ||||++|++|++..+. .|.+++||+||++||.|+
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TG-SGKT~va~~~il~~~~----------~g~q~lilaPT~~LA~Q~ 326 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVG-SGKTVVAALAALAAIE----------AGYQAALMAPTEILAEQH 326 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCC-CcHHHHHHHHHHHHHH----------cCCeEEEEeccHHHHHHH
Confidence 3566799999999999987 4899999999 9999999999998774 477999999999999999
Q ss_pred HHHHhhh-hcCCcEEEEeCCCCCHH---HHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchH
Q 008235 273 RSVCKPL-KAFGIHTVSLHPGAAID---HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTL 348 (573)
Q Consensus 273 ~~~~~~l-~~~~i~~~~~~gg~~~~---~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l 348 (573)
++.++.+ ..++++++.++||.... .+...+..+.++|+||||+++.+ .+.+.++++|||||+|++.. ..
T Consensus 327 ~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~--~q 399 (681)
T PRK10917 327 YENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGV--EQ 399 (681)
T ss_pred HHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhH--HH
Confidence 9999997 55699999999999853 34456666679999999998743 35688999999999999742 22
Q ss_pred HHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccC
Q 008235 349 SLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428 (573)
Q Consensus 349 ~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~ 428 (573)
+..+......+++++||||..+....+ .+..+.. ...+... ......+.+.+.... +...+++.+...+..
T Consensus 400 r~~l~~~~~~~~iL~~SATp~prtl~~--~~~g~~~-~s~i~~~-p~~r~~i~~~~~~~~----~~~~~~~~i~~~~~~- 470 (681)
T PRK10917 400 RLALREKGENPHVLVMTATPIPRTLAM--TAYGDLD-VSVIDEL-PPGRKPITTVVIPDS----RRDEVYERIREEIAK- 470 (681)
T ss_pred HHHHHhcCCCCCEEEEeCCCCHHHHHH--HHcCCCc-eEEEecC-CCCCCCcEEEEeCcc----cHHHHHHHHHHHHHc-
Confidence 333444455789999999976543332 2333221 1122211 122234555444332 223344555554433
Q ss_pred CCCCCCcEEEEecCh--------hhHHHHHHHHHHC--CCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEecccc
Q 008235 429 FHSEPLKVLYIVGKD--------SKFQNLVSTLKCK--GYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHI 493 (573)
Q Consensus 429 ~~~~~~k~lIF~~s~--------~~~~~l~~~L~~~--g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~ 493 (573)
+.+++|||+++ ..++.+++.|... ++.+.. +||+ +.+++++| ++|+..+|++ |++..
T Consensus 471 ----g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~-lHG~m~~~eR~~i~~~F-~~g~~~ILVa-T~vie- 542 (681)
T PRK10917 471 ----GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGL-LHGRMKPAEKDAVMAAF-KAGEIDILVA-TTVIE- 542 (681)
T ss_pred ----CCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEE-EeCCCCHHHHHHHHHHH-HcCCCCEEEE-Cccee-
Confidence 46999999964 4566778888765 456665 5775 45589999 9999999888 56774
Q ss_pred CCCccCCCCEEEeCCCCC-CHHHHHHHHhccccCCCcceEEEEec
Q 008235 494 STAELEEYEVVIVPDFII-SMKNYVEILTSMARHTVSGILHSFFT 537 (573)
Q Consensus 494 rGlDip~v~~VI~~d~P~-s~~~YiqR~GR~gR~g~~G~~i~~~~ 537 (573)
+|+|+|++++||+|+.|+ ....|.||+||+||.|..|.|+++++
T Consensus 543 ~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 543 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred eCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 899999999999999998 46778889999999999999999995
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.6e-38 Score=350.62 Aligned_cols=303 Identities=11% Similarity=0.088 Sum_probs=223.9
Q ss_pred CCCCCHHHHHHHHHHhcC------CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHH
Q 008235 200 PLFVNSWGIEFWKCYSSA------KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (573)
Q Consensus 200 ~~~~t~iQ~~aip~il~g------~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~ 273 (573)
++.+|++|.+||+.++++ .+.++++||| ||||++|++|++..+. .+.+++|++||++||.|++
T Consensus 233 pf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TG-SGKT~va~l~il~~~~----------~g~qvlilaPT~~LA~Q~~ 301 (630)
T TIGR00643 233 PFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVG-SGKTLVAALAMLAAIE----------AGYQVALMAPTEILAEQHY 301 (630)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCccEEEECCCC-CcHHHHHHHHHHHHHH----------cCCcEEEECCHHHHHHHHH
Confidence 355699999999999987 2689999999 9999999999998764 3678999999999999999
Q ss_pred HHHhhh-hcCCcEEEEeCCCCCHHH---HHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHH
Q 008235 274 SVCKPL-KAFGIHTVSLHPGAAIDH---QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLS 349 (573)
Q Consensus 274 ~~~~~l-~~~~i~~~~~~gg~~~~~---~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~ 349 (573)
+.++.+ ..+|++++.++||..... +...+..+.++||||||+++.+ .+.+.++.+|||||+|++.. .+..
T Consensus 302 ~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~-~qr~ 375 (630)
T TIGR00643 302 NSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGV-EQRK 375 (630)
T ss_pred HHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccH-HHHH
Confidence 999987 556999999999988654 4556666679999999998753 35678999999999998753 3333
Q ss_pred HHHHhcC--CCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhcc
Q 008235 350 LIRQSIS--GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427 (573)
Q Consensus 350 ~Il~~l~--~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~ 427 (573)
.+..... ..+|+++||||..+....+ ....+. ....+... ......+...+... ..+ ..++..+...+..
T Consensus 376 ~l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l-~~~~i~~~-p~~r~~i~~~~~~~---~~~-~~~~~~i~~~l~~ 447 (630)
T TIGR00643 376 KLREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDL-DTSIIDEL-PPGRKPITTVLIKH---DEK-DIVYEFIEEEIAK 447 (630)
T ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCc-ceeeeccC-CCCCCceEEEEeCc---chH-HHHHHHHHHHHHh
Confidence 3333332 2689999999976543322 222221 01111111 11122344443332 222 3444555554433
Q ss_pred CCCCCCCcEEEEecCh--------hhHHHHHHHHHHC--CCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccc
Q 008235 428 HFHSEPLKVLYIVGKD--------SKFQNLVSTLKCK--GYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDH 492 (573)
Q Consensus 428 ~~~~~~~k~lIF~~s~--------~~~~~l~~~L~~~--g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s 492 (573)
+.+++|||+.+ ..++.+++.|... ++.+.. +||+ +.++++.| ++|+..+|++ |++..
T Consensus 448 -----g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~-lHG~m~~~eR~~i~~~F-~~g~~~ILVa-T~vie 519 (630)
T TIGR00643 448 -----GRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGL-LHGRMKSDEKEAVMEEF-REGEVDILVA-TTVIE 519 (630)
T ss_pred -----CCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEE-EeCCCCHHHHHHHHHHH-HcCCCCEEEE-Cceee
Confidence 46899999876 4566777777753 566665 5775 45589999 9999999888 56774
Q ss_pred cCCCccCCCCEEEeCCCCC-CHHHHHHHHhccccCCCcceEEEEe
Q 008235 493 ISTAELEEYEVVIVPDFII-SMKNYVEILTSMARHTVSGILHSFF 536 (573)
Q Consensus 493 ~rGlDip~v~~VI~~d~P~-s~~~YiqR~GR~gR~g~~G~~i~~~ 536 (573)
+|+|+|++++||+|+.|+ ....|.||+||+||.|..|.|++++
T Consensus 520 -~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 520 -VGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred -cCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 899999999999999997 5778888999999999999999999
No 54
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.6e-38 Score=342.24 Aligned_cols=308 Identities=12% Similarity=0.059 Sum_probs=236.3
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~ 282 (573)
||+|..++|.++.|+ |+.+.|| +|||++|++|++.... .|+.++||+||++||.|.++++..+ ..+
T Consensus 105 ~~VQ~~~~~~ll~G~--Iae~~TG-eGKTla~~lp~~~~al----------~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 105 FDVQLMGGLALLSGR--LAEMQTG-EGKTLTATLPAGTAAL----------AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred ChHHHHHHHHHhCCC--eeeeeCC-CCcHHHHHHHHHHHhh----------cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 999999999999999 9999999 9999999999997654 4789999999999999999999997 556
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcCC-------------------------CCCCCccEEEE
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLKA-------------------------IDVSGVSLLVV 336 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~~-------------------------~~l~~l~~lVi 336 (573)
|+++++++||.+.. .+.+.. ++||+|||...| .|+|..+. ...+.+.+.||
T Consensus 172 Glsv~~i~gg~~~~--~r~~~y-~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 172 GLTVGCVVEDQSPD--ERRAAY-GADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred CCEEEEEeCCCCHH--HHHHHc-CCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 99999999998643 344444 799999999877 45554321 22466899999
Q ss_pred eCcccccC--------------cc---h----HHHHHHhcC---------------------------------------
Q 008235 337 DRLDSLSK--------------GD---T----LSLIRQSIS--------------------------------------- 356 (573)
Q Consensus 337 DEad~ll~--------------~~---~----l~~Il~~l~--------------------------------------- 356 (573)
||||.++= .. . +..+...+.
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 99997642 00 0 001111000
Q ss_pred -----------------CC-------------------------------------------------------------
Q 008235 357 -----------------GK------------------------------------------------------------- 358 (573)
Q Consensus 357 -----------------~~------------------------------------------------------------- 358 (573)
.+
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 00
Q ss_pred CcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEE
Q 008235 359 PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLY 438 (573)
Q Consensus 359 ~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lI 438 (573)
..+.+||||.+....++...|..+++ .|..... . .....+.++.++ ..+|...|.+.+...... +.++||
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~vv-~IPt~kp--~-~r~~~~~~v~~t-~~~K~~aL~~~i~~~~~~-----~~pvLI 478 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLPVV-RIPTNRP--S-QRRHLPDEVFLT-AAAKWAAVAARVRELHAQ-----GRPVLV 478 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCCeE-EeCCCCC--c-cceecCCEEEeC-HHHHHHHHHHHHHHHHhc-----CCCEEE
Confidence 12447899998877778777777764 5555432 1 222445556665 678999998888775432 358999
Q ss_pred EecChhhHHHHHHHHHHCCCCeeeecCCCHHH---HHHHHHhcCCCCCeEEEEeccccCCCccC---CCC-----EEEeC
Q 008235 439 IVGKDSKFQNLVSTLKCKGYSISTGSNCIVSH---IKNSVEADGRKRPAVSMIDKDHISTAELE---EYE-----VVIVP 507 (573)
Q Consensus 439 F~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~---~l~~F~~~g~~~~l~~lvd~~s~rGlDip---~v~-----~VI~~ 507 (573)
||+|+..++.++..|...|+++..+ ||++.+ .+..| +.+...++++ ||++ .||+||+ +|. |||||
T Consensus 479 ft~t~~~se~L~~~L~~~gi~~~~L-hg~~~~rE~~ii~~-ag~~g~VlVA-TdmA-gRGtDI~l~~~V~~~GGLhVI~~ 554 (656)
T PRK12898 479 GTRSVAASERLSALLREAGLPHQVL-NAKQDAEEAAIVAR-AGQRGRITVA-TNMA-GRGTDIKLEPGVAARGGLHVILT 554 (656)
T ss_pred EeCcHHHHHHHHHHHHHCCCCEEEe-eCCcHHHHHHHHHH-cCCCCcEEEE-ccch-hcccCcCCccchhhcCCCEEEEc
Confidence 9999999999999999999999875 776544 45555 4444555555 6899 4999999 776 99999
Q ss_pred CCCCCHHHHHHHHhccccCCCcceEEEEeccccH
Q 008235 508 DFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541 (573)
Q Consensus 508 d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~ 541 (573)
++|.+...|+||+|||||.|..|.+++|++.+|.
T Consensus 555 d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 555 ERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred CCCCCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 9999999999999999999999999999998764
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.5e-38 Score=369.38 Aligned_cols=301 Identities=12% Similarity=0.139 Sum_probs=214.5
Q ss_pred EEeCCCchhHHHHHHHHHHHHHHhchhcc---CCCCCCcEEEEEcccHHHHHHHHHHHhh----h-------h--cCCcE
Q 008235 222 ETSGSSSTIVQIAWIVATAADSIARKEKE---GFSFTGPFLLFLVSSQEKAAKVRSVCKP----L-------K--AFGIH 285 (573)
Q Consensus 222 ~~A~TG~SGKTlaf~lp~l~~l~~~~~~~---~~~~~~~~~Lil~PtreLa~Qi~~~~~~----l-------~--~~~i~ 285 (573)
++|||| ||||+||.||+|..+....... .....+.++|||+||++|+.|+++.++. + + ..+++
T Consensus 1 V~APTG-SGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~ 79 (1490)
T PRK09751 1 VIAPTG-SGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLR 79 (1490)
T ss_pred CcCCCC-cHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceE
Confidence 579999 9999999999999998653110 0112468999999999999999998864 1 1 14799
Q ss_pred EEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC-CCCCCccEEEEeCcccccC---cc----hHHHHHHhcCC
Q 008235 286 TVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA-IDVSGVSLLVVDRLDSLSK---GD----TLSLIRQSISG 357 (573)
Q Consensus 286 ~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~-~~l~~l~~lViDEad~ll~---~~----~l~~Il~~l~~ 357 (573)
+...+|+++..++.+.+++ .++|||+||++|..+|.++. ..+++|++|||||+|.|++ .. .+.+|...++.
T Consensus 80 V~vrtGDt~~~eR~rll~~-ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 80 VGIRTGDTPAQERSKLTRN-PPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred EEEEECCCCHHHHHHHhcC-CCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC
Confidence 9999999998888777776 79999999999999887643 4689999999999999997 22 45566666677
Q ss_pred CCcEEEEeccCCccHHHHHHHHhc-CCceEEEcCCCccccccceEEEEEEcCChhH---------------HH----HHH
Q 008235 358 KPHTVVFNDCLTYTSVPAVQNLLL-GSINRLSLNQSVASQSACIIQSVNVCASDEE---------------KI----LKG 417 (573)
Q Consensus 358 ~~q~l~~SAT~~~~~~~~~~~~l~-~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~---------------k~----~~l 417 (573)
+.|+++||||+++ ..++++.+.. .|+..+. ... .....+.. ++.+.+..+ .. ..+
T Consensus 159 ~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~--~r~~~l~v-~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v 233 (1490)
T PRK09751 159 SAQRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPA--MRHPQIRI-VVPVANMDDVSSVASGTGEDSHAGREGSIWPYI 233 (1490)
T ss_pred CCeEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCC--CcccceEE-EEecCchhhccccccccccccchhhhhhhhHHH
Confidence 8999999999987 5666654433 3542322 211 11122332 222211100 00 011
Q ss_pred -HHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCC------------------------------C--eeeec
Q 008235 418 -IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY------------------------------S--ISTGS 464 (573)
Q Consensus 418 -~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~------------------------------~--~~~~~ 464 (573)
..++..+. . ..++||||||+..|+.++..|+...- . ....|
T Consensus 234 ~~~il~~i~-~-----~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~H 307 (1490)
T PRK09751 234 ETGILDEVL-R-----HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSH 307 (1490)
T ss_pred HHHHHHHHh-c-----CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeec
Confidence 12332222 1 46899999999999999999976421 0 12347
Q ss_pred CCCH-----HHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccc
Q 008235 465 NCIV-----SHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKD 539 (573)
Q Consensus 465 ~~~~-----~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~ 539 (573)
||.+ ..+.+.| ++|+.+++++ |++. .+||||++|++||||+.|.++.+|+||+||+||. ..|.+..++.+.
T Consensus 308 HGsLSkeeR~~IE~~f-K~G~LrvLVA-TssL-ELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~-~gg~s~gli~p~ 383 (1490)
T PRK09751 308 HGSVSKEQRAITEQAL-KSGELRCVVA-TSSL-ELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ-VGGVSKGLFFPR 383 (1490)
T ss_pred cccCCHHHHHHHHHHH-HhCCceEEEe-CcHH-HccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC-CCCccEEEEEeC
Confidence 8854 4589999 9999998877 5566 3799999999999999999999999999999996 334443334433
No 56
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.2e-38 Score=356.78 Aligned_cols=324 Identities=13% Similarity=0.105 Sum_probs=233.5
Q ss_pred ccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchh
Q 008235 169 CEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKE 248 (573)
Q Consensus 169 ~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~ 248 (573)
++++++|+.+ .+.+...+|. + +|+|.++++.+.+|+|++++|||| ||||++|.++++..+..
T Consensus 3 ~~~~~l~~~~--------~~~~~~~~~~-l-----~~~Q~~ai~~l~~~~nvlv~apTG-SGKTl~a~lail~~l~~--- 64 (674)
T PRK01172 3 ISDLGYDDEF--------LNLFTGNDFE-L-----YDHQRMAIEQLRKGENVIVSVPTA-AGKTLIAYSAIYETFLA--- 64 (674)
T ss_pred HhhcCCCHHH--------HHHHhhCCCC-C-----CHHHHHHHHHHhcCCcEEEECCCC-chHHHHHHHHHHHHHHh---
Confidence 4445566555 3344445654 6 999999999999999999999999 99999999999987753
Q ss_pred ccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCC
Q 008235 249 KEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDV 328 (573)
Q Consensus 249 ~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l 328 (573)
+.++||++||++||.|+++.+..+...|+++...+|+...... .+ . .++|+|+||+++..++.+....+
T Consensus 65 -------~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~--~~-~-~~dIiv~Tpek~~~l~~~~~~~l 133 (674)
T PRK01172 65 -------GLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD--FI-K-RYDVVILTSEKADSLIHHDPYII 133 (674)
T ss_pred -------CCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh--hh-c-cCCEEEECHHHHHHHHhCChhHH
Confidence 4589999999999999999999887678999888888764332 22 2 58999999999999888776778
Q ss_pred CCccEEEEeCcccccC---cchHHHHHHh---cCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEE
Q 008235 329 SGVSLLVVDRLDSLSK---GDTLSLIRQS---ISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQ 402 (573)
Q Consensus 329 ~~l~~lViDEad~ll~---~~~l~~Il~~---l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~ 402 (573)
.++++|||||||++.+ ...++.++.. ++++.|++++|||+++ ..+++. |+..+. +..... . ..+..
T Consensus 134 ~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~--~~~~~r---~-vpl~~ 205 (674)
T PRK01172 134 NDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASL--IKSNFR---P-VPLKL 205 (674)
T ss_pred hhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCc--cCCCCC---C-CCeEE
Confidence 9999999999999986 4556666544 4578999999999986 556655 444332 111100 0 01111
Q ss_pred EE-----EEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCC-------------------
Q 008235 403 SV-----NVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY------------------- 458 (573)
Q Consensus 403 ~~-----~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~------------------- 458 (573)
.+ ..++........+..++...... ++++||||+|+..|+.++..|.....
T Consensus 206 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L 280 (674)
T PRK01172 206 GILYRKRLILDGYERSQVDINSLIKETVND-----GGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSL 280 (674)
T ss_pred EEEecCeeeecccccccccHHHHHHHHHhC-----CCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHH
Confidence 11 11111111111233444444332 46999999999999999988865311
Q ss_pred ------CeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCC---------CCCHHHHHH
Q 008235 459 ------SISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDF---------IISMKNYVE 518 (573)
Q Consensus 459 ------~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~---------P~s~~~Yiq 518 (573)
.+ ..|||. |..+.+.| ++|..+++++ |++. ++|+|+|+.. ||+++. |-+..+|.|
T Consensus 281 ~~~l~~gv-~~~hagl~~~eR~~ve~~f-~~g~i~VLva-T~~l-a~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Q 355 (674)
T PRK01172 281 NEMLPHGV-AFHHAGLSNEQRRFIEEMF-RNRYIKVIVA-TPTL-AAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQ 355 (674)
T ss_pred HHHHhcCE-EEecCCCCHHHHHHHHHHH-HcCCCeEEEe-cchh-hccCCCcceE-EEEcCceEeCCCCceeCCHHHHHH
Confidence 12 346774 44578999 9999999888 5677 5899999864 555443 558899999
Q ss_pred HHhccccCCC--cceEEEEeccc
Q 008235 519 ILTSMARHTV--SGILHSFFTKD 539 (573)
Q Consensus 519 R~GR~gR~g~--~G~~i~~~~~~ 539 (573)
|+|||||.|. .|.+++|+...
T Consensus 356 m~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 356 MIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HhhcCCCCCCCCcceEEEEecCc
Confidence 9999999994 67788887644
No 57
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2.7e-38 Score=366.96 Aligned_cols=292 Identities=12% Similarity=0.087 Sum_probs=225.2
Q ss_pred HHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE
Q 008235 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (573)
Q Consensus 183 ~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil 262 (573)
...+.+.+.......| ||+|+.++|.++.|+|++++|||| ||||+ |++|++..+.. .++++|||
T Consensus 64 ~~~f~~~f~~~~g~~p-----~~iQ~~~i~~il~G~d~vi~ApTG-sGKT~-f~l~~~~~l~~---------~g~~vLIL 127 (1171)
T TIGR01054 64 LKEFEEFFKKAVGSEP-----WSIQKMWAKRVLRGDSFAIIAPTG-VGKTT-FGLAMSLFLAK---------KGKRCYII 127 (1171)
T ss_pred HHHHHHHHHHhcCCCC-----cHHHHHHHHHHhCCCeEEEECCCC-CCHHH-HHHHHHHHHHh---------cCCeEEEE
Confidence 4455555655555578 999999999999999999999999 99996 77888766543 37899999
Q ss_pred cccHHHHHHHHHHHhhhhc-CCcEEE---EeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEE
Q 008235 263 VSSQEKAAKVRSVCKPLKA-FGIHTV---SLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (573)
Q Consensus 263 ~PtreLa~Qi~~~~~~l~~-~~i~~~---~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lV 335 (573)
+|||+||.|+++.++.+.. .++.+. +++||.+...+ ...+.+++++|||+||++|.+++..- .. +++++|
T Consensus 128 ~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iV 204 (1171)
T TIGR01054 128 LPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIF 204 (1171)
T ss_pred eCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEE
Confidence 9999999999999999843 465543 57899887654 34556656999999999999887652 12 899999
Q ss_pred EeCcccccC-c--------------chHHHHH----------------------HhcCCCCc--EEEEecc-CCccHHHH
Q 008235 336 VDRLDSLSK-G--------------DTLSLIR----------------------QSISGKPH--TVVFNDC-LTYTSVPA 375 (573)
Q Consensus 336 iDEad~ll~-~--------------~~l~~Il----------------------~~l~~~~q--~l~~SAT-~~~~~~~~ 375 (573)
|||||+|++ . +.+..|+ +.++..+| +++|||| +|..+..
T Consensus 205 vDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~- 283 (1171)
T TIGR01054 205 VDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA- 283 (1171)
T ss_pred EeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH-
Confidence 999999986 1 1244433 23445555 5679999 5665432
Q ss_pred HHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecCh---hhHHHHHHH
Q 008235 376 VQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKD---SKFQNLVST 452 (573)
Q Consensus 376 ~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~---~~~~~l~~~ 452 (573)
.++.++. .+.++.. .....+|.|.++.+.. +...|.++|..+ +.++||||+++ +.|++|+..
T Consensus 284 --~l~r~ll-~~~v~~~-~~~~r~I~~~~~~~~~---~~~~L~~ll~~l--------~~~~IVFv~t~~~~~~a~~l~~~ 348 (1171)
T TIGR01054 284 --KLFRELL-GFEVGGG-SDTLRNVVDVYVEDED---LKETLLEIVKKL--------GTGGIVYVSIDYGKEKAEEIAEF 348 (1171)
T ss_pred --HHccccc-ceEecCc-cccccceEEEEEeccc---HHHHHHHHHHHc--------CCCEEEEEeccccHHHHHHHHHH
Confidence 3455554 5666654 3556789998886642 234566666554 35899999999 999999999
Q ss_pred HHHCCCCeeeecCCCH-HHHHHHHHhcCCCCCeEEE---EeccccCCCccCC-CCEEEeCCCCCC
Q 008235 453 LKCKGYSISTGSNCIV-SHIKNSVEADGRKRPAVSM---IDKDHISTAELEE-YEVVIVPDFIIS 512 (573)
Q Consensus 453 L~~~g~~~~~~~~~~~-~~~l~~F~~~g~~~~l~~l---vd~~s~rGlDip~-v~~VI~~d~P~s 512 (573)
|...|+++.. +||++ .+++++| ++|+.++|+++ +|++ +||||+|+ |++|||||+|..
T Consensus 349 L~~~g~~a~~-lhg~~~~~~l~~F-r~G~~~vLVata~~tdv~-aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 349 LENHGVKAVA-YHATKPKEDYEKF-AEGEIDVLIGVASYYGTL-VRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred HHhCCceEEE-EeCCCCHHHHHHH-HcCCCCEEEEeccccCcc-cccCCCCccccEEEEECCCCE
Confidence 9999999886 58877 7799999 99999999985 3888 69999999 899999999976
No 58
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=3.7e-39 Score=319.03 Aligned_cols=271 Identities=16% Similarity=0.148 Sum_probs=215.9
Q ss_pred EEEEEcccHHHHHHHHHHHhhhhcC----CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccE
Q 008235 258 FLLFLVSSQEKAAKVRSVCKPLKAF----GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSL 333 (573)
Q Consensus 258 ~~Lil~PtreLa~Qi~~~~~~l~~~----~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~ 333 (573)
.+||+-|+||||.|+++.+++|+.+ .++...++||.-...|...+.. +.+|+|+|||||.+++..+.+.+.++++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~-g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKD-GTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhc-CceeeecCchhhhhhhhccceeeeeeEE
Confidence 8999999999999999999988442 5777789999999999999999 8999999999999999999999999999
Q ss_pred EEEeCcccccC---cchHHHHHHhcC------CCCcEEEEeccCCc-cHHHHHHHHhcCCceEEEcCCCccccccceEEE
Q 008235 334 LVVDRLDSLSK---GDTLSLIRQSIS------GKPHTVVFNDCLTY-TSVPAVQNLLLGSINRLSLNQSVASQSACIIQS 403 (573)
Q Consensus 334 lViDEad~ll~---~~~l~~Il~~l~------~~~q~l~~SAT~~~-~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~ 403 (573)
||+||||.++. .+.+.++...+| ...|.+++|||+.- ++..+..+.|.-|. .+.+...+ ..+..+.|.
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfpt-wVdLkgeD-~vpetvHhv 444 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPT-WVDLKGED-LVPETVHHV 444 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCce-eEeccccc-ccchhhccc
Confidence 99999999997 556666666664 45799999999864 46777888888886 77776542 444555555
Q ss_pred EEEcCC-hhHHHHHHH----------------------------HHHH-----HHhccCCCCCCCcEEEEecChhhHHHH
Q 008235 404 VNVCAS-DEEKILKGI----------------------------QVLD-----HAYGDHFHSEPLKVLYIVGKDSKFQNL 449 (573)
Q Consensus 404 ~~~~~~-~~~k~~~l~----------------------------~~L~-----~~~~~~~~~~~~k~lIF~~s~~~~~~l 449 (573)
+..+.. -..-+..+. .+|+ .+++.+. -.++||||.|+..|+.|
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~---mdkaiifcrtk~dcDnL 521 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHA---MDKAIIFCRTKQDCDNL 521 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhc---cCceEEEEeccccchHH
Confidence 543321 111111111 1111 1122222 57999999999999999
Q ss_pred HHHHHHCC---CCeeeecCCCH-----HHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHh
Q 008235 450 VSTLKCKG---YSISTGSNCIV-----SHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILT 521 (573)
Q Consensus 450 ~~~L~~~g---~~~~~~~~~~~-----~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~G 521 (573)
-++|+..| ++++++ ||++ .+.++.| +.+..+.+++ +|++ +|||||.++.++||..+|.+-..|+||+|
T Consensus 522 er~~~qkgg~~~scvcl-hgDrkP~Erk~nle~F-kk~dvkflic-tdva-argldi~g~p~~invtlpd~k~nyvhrig 597 (725)
T KOG0349|consen 522 ERMMNQKGGKHYSCVCL-HGDRKPDERKANLESF-KKFDVKFLIC-TDVA-ARGLDITGLPFMINVTLPDDKTNYVHRIG 597 (725)
T ss_pred HHHHHHcCCccceeEEE-ecCCChhHHHHHHHhh-hhcCeEEEEE-ehhh-hccccccCCceEEEEecCcccchhhhhhh
Confidence 99999875 566664 8765 4579999 8888888777 6999 79999999999999999999999999999
Q ss_pred ccccCCCcceEEEEecc
Q 008235 522 SMARHTVSGILHSFFTK 538 (573)
Q Consensus 522 R~gR~g~~G~~i~~~~~ 538 (573)
|+||+.+-|.+|+++..
T Consensus 598 rvgraermglaislvat 614 (725)
T KOG0349|consen 598 RVGRAERMGLAISLVAT 614 (725)
T ss_pred ccchhhhcceeEEEeec
Confidence 99999999999998753
No 59
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.1e-37 Score=328.92 Aligned_cols=318 Identities=14% Similarity=0.131 Sum_probs=239.2
Q ss_pred CCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHH
Q 008235 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (573)
Q Consensus 193 ~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi 272 (573)
.||..- .|-|.++|..+++|+|+++..||| +||++||.||++-. ...+|||+|..+|-.
T Consensus 13 fGy~~F-----R~gQ~evI~~~l~g~d~lvvmPTG-gGKSlCyQiPAll~-------------~G~TLVVSPLiSLM~-- 71 (590)
T COG0514 13 FGYASF-----RPGQQEIIDALLSGKDTLVVMPTG-GGKSLCYQIPALLL-------------EGLTLVVSPLISLMK-- 71 (590)
T ss_pred hCcccc-----CCCHHHHHHHHHcCCcEEEEccCC-CCcchHhhhHHHhc-------------CCCEEEECchHHHHH--
Confidence 366655 778999999999999999999999 99999999999842 226899999777754
Q ss_pred HHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-----
Q 008235 273 RSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----- 344 (573)
Q Consensus 273 ~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----- 344 (573)
+++..+...|+.+.++.+..+.++.. ..+..+..++|+-+|++|..--....+.--.+.++||||||++.+
T Consensus 72 -DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdF 150 (590)
T COG0514 72 -DQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDF 150 (590)
T ss_pred -HHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCcc
Confidence 55555545599999999987766543 455555689999999998532211222245688999999999988
Q ss_pred cch---HHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhc--CCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHH
Q 008235 345 GDT---LSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLL--GSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419 (573)
Q Consensus 345 ~~~---l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~--~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 419 (573)
+++ +..+...++ +..++.+|||.++.++..+...|. .+. .+... ...+||...+....+...++.
T Consensus 151 RP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~-~~~~s----fdRpNi~~~v~~~~~~~~q~~---- 220 (590)
T COG0514 151 RPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDAN-IFRGS----FDRPNLALKVVEKGEPSDQLA---- 220 (590)
T ss_pred CHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcc-eEEec----CCCchhhhhhhhcccHHHHHH----
Confidence 344 444445555 889999999999998887777665 332 22221 223455544444432333333
Q ss_pred HHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCC----CHHHHHHHHHhcCCCCCeEEEEeccccC-
Q 008235 420 VLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC----IVSHIKNSVEADGRKRPAVSMIDKDHIS- 494 (573)
Q Consensus 420 ~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~l~~F~~~g~~~~l~~lvd~~s~r- 494 (573)
+|... .... ....||||.|++.|+.+++.|...|+.+...|+| +|..+.+.| ..+...++|+++ + ..
T Consensus 221 fi~~~-~~~~---~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f-~~~~~~iiVAT~--A-FGM 292 (590)
T COG0514 221 FLATV-LPQL---SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAF-LNDEIKVMVATN--A-FGM 292 (590)
T ss_pred HHHhh-cccc---CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHH-hcCCCcEEEEec--c-ccC
Confidence 33221 1222 5679999999999999999999999999875443 355578999 888888887733 2 23
Q ss_pred CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHH
Q 008235 495 TAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEI 550 (573)
Q Consensus 495 GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~ 550 (573)
|||.|||++|||||+|.|+++|+|.+||+||+|....|++|+.+.|..+.+.+.+.
T Consensus 293 GIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 293 GIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred ccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998888877664
No 60
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=8.7e-37 Score=342.93 Aligned_cols=300 Identities=12% Similarity=0.087 Sum_probs=225.6
Q ss_pred HHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh-hh-cCCcE
Q 008235 208 IEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LK-AFGIH 285 (573)
Q Consensus 208 ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~-l~-~~~i~ 285 (573)
.+.+..+.++.++|++|+|| ||||.+|.+|+++... .+.++||+.|||++|.|+...+.. +. ..|..
T Consensus 8 ~~i~~~l~~~~~vIi~a~TG-SGKTT~vpl~lL~~~~----------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~ 76 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPG-AGKSTAVPLALLDAPG----------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQT 76 (819)
T ss_pred HHHHHHHHcCCcEEEECCCC-CCHHHHHHHHHHHhhc----------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE
Confidence 34556666789999999999 9999999999997752 245899999999999999998754 42 34666
Q ss_pred EEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcc-cccC----cchHHHHHHhcCCCCc
Q 008235 286 TVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD-SLSK----GDTLSLIRQSISGKPH 360 (573)
Q Consensus 286 ~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad-~ll~----~~~l~~Il~~l~~~~q 360 (573)
++..+++.+ .... ..+|+|+|||+|++++... ..++++++||||||| ++++ ...+..+...++++.|
T Consensus 77 VGy~vr~~~------~~s~-~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlq 148 (819)
T TIGR01970 77 VGYRVRGEN------KVSR-RTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLK 148 (819)
T ss_pred EEEEEcccc------ccCC-CCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCce
Confidence 666655543 2233 5799999999999998864 579999999999999 5776 2234556667788999
Q ss_pred EEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEe
Q 008235 361 TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIV 440 (573)
Q Consensus 361 ~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~ 440 (573)
+++||||++... ...|+.++. .+.+... ...+++.|..+...+.....+...+..++... .+.+||||
T Consensus 149 lIlmSATl~~~~---l~~~l~~~~-vI~~~gr----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~----~g~iLVFl 216 (819)
T TIGR01970 149 ILAMSATLDGER---LSSLLPDAP-VVESEGR----SFPVEIRYLPLRGDQRLEDAVSRAVEHALASE----TGSILVFL 216 (819)
T ss_pred EEEEeCCCCHHH---HHHHcCCCc-EEEecCc----ceeeeeEEeecchhhhHHHHHHHHHHHHHHhc----CCcEEEEE
Confidence 999999999643 356776553 4554432 12467777666422222222333444444332 46899999
Q ss_pred cChhhHHHHHHHHHH---CCCCeeeecCCCH-----HHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCC
Q 008235 441 GKDSKFQNLVSTLKC---KGYSISTGSNCIV-----SHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIIS 512 (573)
Q Consensus 441 ~s~~~~~~l~~~L~~---~g~~~~~~~~~~~-----~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s 512 (573)
++..+++.++..|.. .++.+..+ ||++ ..+++.| +.|+.+++++ ||++. +|||||+|++||++++|+.
T Consensus 217 pg~~eI~~l~~~L~~~~~~~~~v~pL-Hg~L~~~eq~~~~~~~-~~G~rkVlVA-TnIAE-rgItIp~V~~VID~Gl~r~ 292 (819)
T TIGR01970 217 PGQAEIRRVQEQLAERLDSDVLICPL-YGELSLAAQDRAIKPD-PQGRRKVVLA-TNIAE-TSLTIEGIRVVIDSGLARV 292 (819)
T ss_pred CCHHHHHHHHHHHHhhcCCCcEEEEe-cCCCCHHHHHHHHhhc-ccCCeEEEEe-cchHh-hcccccCceEEEEcCcccc
Confidence 999999999999987 36777764 7754 3478888 8888888877 78995 9999999999999999863
Q ss_pred ------------------HHHHHHHHhccccCCCcceEEEEeccccHHH
Q 008235 513 ------------------MKNYVEILTSMARHTVSGILHSFFTKDDAAH 543 (573)
Q Consensus 513 ------------------~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~ 543 (573)
-.+|+||+||+||. ..|.||.|+++.+...
T Consensus 293 ~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 293 ARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred cccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 34699999999998 7999999999876543
No 61
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1e-36 Score=343.19 Aligned_cols=296 Identities=12% Similarity=0.105 Sum_probs=223.8
Q ss_pred HHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh-hh-cCCcEE
Q 008235 209 EFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LK-AFGIHT 286 (573)
Q Consensus 209 ~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~-l~-~~~i~~ 286 (573)
+.+..+.+++|++++|||| ||||.+|.+|+++... ...++||++|||++|.|+.+.+.. +. ..|..+
T Consensus 12 ~i~~~l~~~~~vvv~A~TG-SGKTt~~pl~lL~~~~----------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTG-AGKSTWLPLQLLQHGG----------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHhCCCEEEEcCCC-CCHHHHHHHHHHHcCC----------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 4455566779999999999 9999999999996532 134899999999999999998854 42 347777
Q ss_pred EEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCccc-ccC----cchHHHHHHhcCCCCcE
Q 008235 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSK----GDTLSLIRQSISGKPHT 361 (573)
Q Consensus 287 ~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~-ll~----~~~l~~Il~~l~~~~q~ 361 (573)
+..+++.+.. .. ..+|+|+|||+|++++... ..++++++|||||+|. .++ ...+..++..++++.|+
T Consensus 81 Gy~vr~~~~~------~~-~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lql 152 (812)
T PRK11664 81 GYRMRAESKV------GP-NTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKL 152 (812)
T ss_pred EEEecCcccc------CC-CCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceE
Confidence 7777765422 12 4689999999999998864 5799999999999996 454 33445666777889999
Q ss_pred EEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHH-HHHHHHHHHHhccCCCCCCCcEEEEe
Q 008235 362 VVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI-LKGIQVLDHAYGDHFHSEPLKVLYIV 440 (573)
Q Consensus 362 l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~-~~l~~~L~~~~~~~~~~~~~k~lIF~ 440 (573)
++||||++.. . ...|+.++. .+.+... ...+++.|..+.. ..++ ..+...|...+... .+.+||||
T Consensus 153 ilmSATl~~~--~-l~~~~~~~~-~I~~~gr----~~pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~~----~g~iLVFl 219 (812)
T PRK11664 153 LIMSATLDND--R-LQQLLPDAP-VIVSEGR----SFPVERRYQPLPA-HQRFDEAVARATAELLRQE----SGSLLLFL 219 (812)
T ss_pred EEEecCCCHH--H-HHHhcCCCC-EEEecCc----cccceEEeccCch-hhhHHHHHHHHHHHHHHhC----CCCEEEEc
Confidence 9999999864 2 356676554 4444322 1247777776653 3333 23334455544432 47899999
Q ss_pred cChhhHHHHHHHHHH---CCCCeeeecCCCHH-----HHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCC
Q 008235 441 GKDSKFQNLVSTLKC---KGYSISTGSNCIVS-----HIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIIS 512 (573)
Q Consensus 441 ~s~~~~~~l~~~L~~---~g~~~~~~~~~~~~-----~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s 512 (573)
++..+++.++..|.. .++.+.. +||+++ .++..| ++|+.+++++ ||++. +|||||+|++||++++|+.
T Consensus 220 pg~~ei~~l~~~L~~~~~~~~~v~~-Lhg~l~~~eq~~~~~~~-~~G~rkVlvA-TnIAE-rsLtIp~V~~VID~Gl~r~ 295 (812)
T PRK11664 220 PGVGEIQRVQEQLASRVASDVLLCP-LYGALSLAEQQKAILPA-PAGRRKVVLA-TNIAE-TSLTIEGIRLVVDSGLERV 295 (812)
T ss_pred CCHHHHHHHHHHHHHhccCCceEEE-eeCCCCHHHHHHHhccc-cCCCeEEEEe-cchHH-hcccccCceEEEECCCccc
Confidence 999999999999987 4677766 477543 367888 7888888877 78995 9999999999999888753
Q ss_pred ------------------HHHHHHHHhccccCCCcceEEEEeccccH
Q 008235 513 ------------------MKNYVEILTSMARHTVSGILHSFFTKDDA 541 (573)
Q Consensus 513 ------------------~~~YiqR~GR~gR~g~~G~~i~~~~~~d~ 541 (573)
-.+|+||+||+||. ..|.||.|+++.+.
T Consensus 296 ~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 296 ARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred ccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 35899999999998 69999999998754
No 62
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.9e-35 Score=326.41 Aligned_cols=308 Identities=9% Similarity=0.022 Sum_probs=219.3
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~ 282 (573)
+++|..+++.+++|+ |+.+.|| +|||++|++|++...+ .|+.++|++||++||.|.++.+..+ ..+
T Consensus 80 ~~vQl~~~~~l~~G~--Iaem~TG-eGKTL~a~lp~~l~al----------~G~~v~VvTpt~~LA~qd~e~~~~l~~~l 146 (790)
T PRK09200 80 YDVQLIGALVLHEGN--IAEMQTG-EGKTLTATMPLYLNAL----------EGKGVHLITVNDYLAKRDAEEMGQVYEFL 146 (790)
T ss_pred chHHHHhHHHHcCCc--eeeecCC-CcchHHHHHHHHHHHH----------cCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999987 9999999 9999999999985555 4779999999999999999999997 556
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcCC------CCCCCccEEEEeCcccccC-----------
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLKA------IDVSGVSLLVVDRLDSLSK----------- 344 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~~------~~l~~l~~lViDEad~ll~----------- 344 (573)
|+++++++||.+...+.+.. . ++||+||||++| .|+|.... ..++.+.++||||||.|+=
T Consensus 147 Gl~v~~i~g~~~~~~~r~~~-y-~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg 224 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKAI-Y-EADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISG 224 (790)
T ss_pred CCeEEEEeCCCCcHHHHHHh-c-CCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeC
Confidence 99999999999854444433 3 699999999999 66665432 3568899999999998753
Q ss_pred --------cchHHHHHHhcCC--------CCcE-----------------------------------------------
Q 008235 345 --------GDTLSLIRQSISG--------KPHT----------------------------------------------- 361 (573)
Q Consensus 345 --------~~~l~~Il~~l~~--------~~q~----------------------------------------------- 361 (573)
...+..+...+.. ....
T Consensus 225 ~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~d 304 (790)
T PRK09200 225 KPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVD 304 (790)
T ss_pred CCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCc
Confidence 1111122222211 0111
Q ss_pred --------------------------------------------------------------EEEeccCCccHHHHHHHH
Q 008235 362 --------------------------------------------------------------VVFNDCLTYTSVPAVQNL 379 (573)
Q Consensus 362 --------------------------------------------------------------l~~SAT~~~~~~~~~~~~ 379 (573)
.++|.|......++...|
T Consensus 305 YiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y 384 (790)
T PRK09200 305 YIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVY 384 (790)
T ss_pred EEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHh
Confidence 122333222111111111
Q ss_pred hcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCC
Q 008235 380 LLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (573)
Q Consensus 380 l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~ 459 (573)
+-+ ++.+............ ..++++ ...|...|...+...... ..++||||+|+..++.|+..|...|++
T Consensus 385 -~l~--v~~IPt~kp~~r~d~~-~~i~~~-~~~K~~al~~~i~~~~~~-----~~pvLIf~~t~~~se~l~~~L~~~gi~ 454 (790)
T PRK09200 385 -NME--VVQIPTNRPIIRIDYP-DKVFVT-LDEKYKAVIEEVKERHET-----GRPVLIGTGSIEQSETFSKLLDEAGIP 454 (790)
T ss_pred -CCc--EEECCCCCCcccccCC-CeEEcC-HHHHHHHHHHHHHHHHhc-----CCCEEEEeCcHHHHHHHHHHHHHCCCC
Confidence 111 2222221111111111 223343 577998888888765332 569999999999999999999999999
Q ss_pred eeeecCCCHHH---HHHHHHhcCCC-CCeEEEEeccccCCCcc---CCCC-----EEEeCCCCCCHHHHHHHHhccccCC
Q 008235 460 ISTGSNCIVSH---IKNSVEADGRK-RPAVSMIDKDHISTAEL---EEYE-----VVIVPDFIISMKNYVEILTSMARHT 527 (573)
Q Consensus 460 ~~~~~~~~~~~---~l~~F~~~g~~-~~l~~lvd~~s~rGlDi---p~v~-----~VI~~d~P~s~~~YiqR~GR~gR~g 527 (573)
+..+ ||++.+ .+.. ..|+. .++++ ||++ .||+|| |+|. |||+|++|.+...|+||+|||||.|
T Consensus 455 ~~~L-~~~~~~~e~~~i~--~ag~~g~VlIA-TdmA-gRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G 529 (790)
T PRK09200 455 HNLL-NAKNAAKEAQIIA--EAGQKGAVTVA-TNMA-GRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG 529 (790)
T ss_pred EEEe-cCCccHHHHHHHH--HcCCCCeEEEE-ccch-hcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC
Confidence 9875 765433 1222 23333 44444 6899 499999 7999 9999999999999999999999999
Q ss_pred CcceEEEEeccccH
Q 008235 528 VSGILHSFFTKDDA 541 (573)
Q Consensus 528 ~~G~~i~~~~~~d~ 541 (573)
.+|.+++|++.+|.
T Consensus 530 ~~G~s~~~is~eD~ 543 (790)
T PRK09200 530 DPGSSQFFISLEDD 543 (790)
T ss_pred CCeeEEEEEcchHH
Confidence 99999999998764
No 63
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.8e-34 Score=313.91 Aligned_cols=308 Identities=11% Similarity=0.012 Sum_probs=222.3
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~ 282 (573)
+++|..+.+.++.|+ |+.++|| +|||++|++|++-..+. |..++|++||++||.|.++++..+ ..+
T Consensus 58 ~~vQlig~~~l~~G~--Iaem~TG-eGKTLva~lpa~l~aL~----------G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 58 FDVQLIGGIALHKGK--IAEMKTG-EGKTLTATLPAYLNALT----------GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred cchHHhhhhhhcCCc--eeeecCC-CccHHHHHHHHHHHHHh----------CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 999999999999887 9999999 99999999999644432 456999999999999999999997 556
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcC------CCCCCCccEEEEeCcccccC----------c
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLK------AIDVSGVSLLVVDRLDSLSK----------G 345 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~------~~~l~~l~~lViDEad~ll~----------~ 345 (573)
|+++++++||.+...+.... .++|+||||++| .|+|..+ .+.++.+.++||||||+|+- .
T Consensus 125 GLsv~~i~g~~~~~~r~~~y---~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg 201 (745)
T TIGR00963 125 GLSVGLILSGMSPEERREAY---ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISG 201 (745)
T ss_pred CCeEEEEeCCCCHHHHHHhc---CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcC
Confidence 99999999999876543332 589999999999 9999876 35679999999999998864 0
Q ss_pred ---------chHHHHHHhcCC--------CCc------------------------------------------------
Q 008235 346 ---------DTLSLIRQSISG--------KPH------------------------------------------------ 360 (573)
Q Consensus 346 ---------~~l~~Il~~l~~--------~~q------------------------------------------------ 360 (573)
.....|...+.. ..+
T Consensus 202 ~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~d 281 (745)
T TIGR00963 202 PAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVD 281 (745)
T ss_pred CCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 000111111110 001
Q ss_pred -------------------------------------------------------------EEEEeccCCccHHHHHHHH
Q 008235 361 -------------------------------------------------------------TVVFNDCLTYTSVPAVQNL 379 (573)
Q Consensus 361 -------------------------------------------------------------~l~~SAT~~~~~~~~~~~~ 379 (573)
+.++|.|......++...|
T Consensus 282 YiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 361 (745)
T TIGR00963 282 YIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIY 361 (745)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHh
Confidence 1122233222111111111
Q ss_pred hcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCC
Q 008235 380 LLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (573)
Q Consensus 380 l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~ 459 (573)
+-+ ++.+... .+.....+.-.+.....+|+..+.+.+...... +.++||||+|+..++.++..|...|++
T Consensus 362 -~l~--vv~IPtn--kp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~-----grpvLV~t~si~~se~ls~~L~~~gi~ 431 (745)
T TIGR00963 362 -NLE--VVVVPTN--RPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAK-----GQPVLVGTTSVEKSELLSNLLKERGIP 431 (745)
T ss_pred -CCC--EEEeCCC--CCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhc-----CCCEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 111 1222211 111111111112223567888877777665443 569999999999999999999999999
Q ss_pred eeeecCCC---HHHHHHHHHhcCCCCCeEEEEeccccCCCccCC-------CCEEEeCCCCCCHHHHHHHHhccccCCCc
Q 008235 460 ISTGSNCI---VSHIKNSVEADGRKRPAVSMIDKDHISTAELEE-------YEVVIVPDFIISMKNYVEILTSMARHTVS 529 (573)
Q Consensus 460 ~~~~~~~~---~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~-------v~~VI~~d~P~s~~~YiqR~GR~gR~g~~ 529 (573)
+..+ |++ ++..+..| +.+...++++ ||+++ ||+||+. .-|||+|++|.|...|.||.|||||.|.+
T Consensus 432 ~~~L-na~q~~rEa~ii~~-ag~~g~VtIA-TnmAg-RGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~ 507 (745)
T TIGR00963 432 HNVL-NAKNHEREAEIIAQ-AGRKGAVTIA-TNMAG-RGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDP 507 (745)
T ss_pred eEEe-eCChHHHHHHHHHh-cCCCceEEEE-ecccc-CCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCC
Confidence 9875 664 34468888 6777777766 68994 9999998 55999999999999999999999999999
Q ss_pred ceEEEEeccccH
Q 008235 530 GILHSFFTKDDA 541 (573)
Q Consensus 530 G~~i~~~~~~d~ 541 (573)
|.+..|++.+|.
T Consensus 508 G~s~~~ls~eD~ 519 (745)
T TIGR00963 508 GSSRFFLSLEDN 519 (745)
T ss_pred cceEEEEeccHH
Confidence 999999998764
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=5.5e-35 Score=317.27 Aligned_cols=299 Identities=11% Similarity=0.010 Sum_probs=211.0
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcC
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF 282 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~ 282 (573)
++|+|.+|++.++.+++.+++|||| +|||+++.. +...+... ...++||||||++|+.|+.+.+..+...
T Consensus 115 ~r~~Q~~av~~~l~~~~~il~apTG-sGKT~i~~~-l~~~~~~~--------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 115 PHWYQYDAVYEGLKNNRRLLNLPTS-AGKSLIQYL-LSRYYLEN--------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred CCHHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHH-HHHHHHhc--------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 4999999999999999999999999 999997643 22222222 2348999999999999999999987433
Q ss_pred -CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCCCCcE
Q 008235 283 -GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHT 361 (573)
Q Consensus 283 -~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~ 361 (573)
...+..++||.... . +.+|+|+||++|.+... ..+.++++|||||||++. ...+..++..++..+|+
T Consensus 185 ~~~~~~~i~~g~~~~-------~-~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~-~~~~~~il~~~~~~~~~ 252 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------T-DAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFT-GKSLTSIITKLDNCKFK 252 (501)
T ss_pred cccceeEEecCcccC-------C-CCCEEEeeHHHHhhchh---hhccccCEEEEEchhccc-chhHHHHHHhhhccceE
Confidence 34555666765432 2 57999999999976442 246789999999999998 56678888888778899
Q ss_pred EEEeccCCccHHHHH--HHHhcCCceEEEcCCCc---cccccce--------------------EEEEEEcCChhHHHHH
Q 008235 362 VVFNDCLTYTSVPAV--QNLLLGSINRLSLNQSV---ASQSACI--------------------IQSVNVCASDEEKILK 416 (573)
Q Consensus 362 l~~SAT~~~~~~~~~--~~~l~~~~~~i~~~~~~---~~~~~~i--------------------~~~~~~~~~~~~k~~~ 416 (573)
++||||++....... ..+++.....+...... ......+ .+.+........+...
T Consensus 253 lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~ 332 (501)
T PHA02558 253 FGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKW 332 (501)
T ss_pred EEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHH
Confidence 999999975422111 11222111111110000 0000000 0000001112334455
Q ss_pred HHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEecc
Q 008235 417 GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKD 491 (573)
Q Consensus 417 l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~ 491 (573)
+..++..+... +.++||||++.++++.|++.|...|+++..+ ||+ |..+++.| ++|...++++.+|+.
T Consensus 333 I~~~~~~~~~~-----~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i-~G~~~~~eR~~i~~~~-~~~~~~vLvaT~~~l 405 (501)
T PHA02558 333 IANLALKLAKK-----GENTFVMFKYVEHGKPLYEMLKKVYDKVYYV-SGEVDTEDRNEMKKIA-EGGKGIIIVASYGVF 405 (501)
T ss_pred HHHHHHHHHhc-----CCCEEEEEEEHHHHHHHHHHHHHcCCCEEEE-eCCCCHHHHHHHHHHH-hCCCCeEEEEEccee
Confidence 55555554422 4689999999999999999999999998864 664 44567888 778877777744788
Q ss_pred ccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcce
Q 008235 492 HISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGI 531 (573)
Q Consensus 492 s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~ 531 (573)
+ +|+|+|++++||++++|.+...|+||+||++|.+..+.
T Consensus 406 ~-eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 406 S-TGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred c-cccccccccEEEEecCCcchhhhhhhhhccccCCCCCc
Confidence 5 89999999999999999999999999999999886543
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=7.7e-35 Score=304.86 Aligned_cols=293 Identities=11% Similarity=0.046 Sum_probs=198.6
Q ss_pred cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHH--
Q 008235 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID-- 296 (573)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~-- 296 (573)
|+++.|||| ||||++|++|++..+... .+.+++|++||++|+.|+++.+..+- +-.++.++|+....
T Consensus 1 ~vvi~apTG-sGKT~~~~~~~l~~~~~~--------~~~~ii~v~P~~~L~~q~~~~l~~~f--~~~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTG-YGKTEAALLWALHSIKSQ--------KADRVIIALPTRATINAMYRRAKELF--GSNLGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCC-CCHHHHHHHHHHHHHhhC--------CCCeEEEEeehHHHHHHHHHHHHHHh--CcccEEeeccHHHHHH
Confidence 689999999 999999999999876533 36689999999999999999998861 21333344433211
Q ss_pred ----------HHHHHhhc-----CCCcEEEeCHHHHHHHHHcCC----CCCC--CccEEEEeCcccccC--cchHHHHHH
Q 008235 297 ----------HQITGLRS-----CEPEFLVSTPERLLKLVSLKA----IDVS--GVSLLVVDRLDSLSK--GDTLSLIRQ 353 (573)
Q Consensus 297 ----------~~~~~l~~-----~~~~IlV~TP~rL~~~l~~~~----~~l~--~l~~lViDEad~ll~--~~~l~~Il~ 353 (573)
........ ...+|+|+||++++..+.... ..+. ...+|||||||.+.+ ...+..++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~ 149 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLE 149 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11111111 136799999999988776521 1111 237999999999988 444666666
Q ss_pred hcC-CCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcC-ChhHHHHHHHHHHHHHhccCCCC
Q 008235 354 SIS-GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHAYGDHFHS 431 (573)
Q Consensus 354 ~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~~k~~~l~~~L~~~~~~~~~~ 431 (573)
.+. .+.|+++||||+|..+.+++..+...+. ....... .......+.+..+. ....+...+..++....
T Consensus 150 ~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~------ 220 (358)
T TIGR01587 150 VLKDNDVPILLMSATLPKFLKEYAEKIGYVEF-NEPLDLK--EERRFERHRFIKIESDKVGEISSLERLLEFIK------ 220 (358)
T ss_pred HHHHcCCCEEEEecCchHHHHHHHhcCCCccc-ccCCCCc--cccccccccceeeccccccCHHHHHHHHHHhh------
Confidence 654 5789999999999766666655433221 1111110 00011233333322 12334555555554332
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHCCCC--eeeecCCCH-----HH----HHHHHHhcCCCCCeEEEEeccccCCCccCC
Q 008235 432 EPLKVLYIVGKDSKFQNLVSTLKCKGYS--ISTGSNCIV-----SH----IKNSVEADGRKRPAVSMIDKDHISTAELEE 500 (573)
Q Consensus 432 ~~~k~lIF~~s~~~~~~l~~~L~~~g~~--~~~~~~~~~-----~~----~l~~F~~~g~~~~l~~lvd~~s~rGlDip~ 500 (573)
.+.++||||+|++.|+.++..|...+.. +.. +||.+ .+ +++.| ++++..++++ ||+++ +|+||+
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~-~h~~~~~~~r~~~~~~~~~~f-~~~~~~ilva-T~~~~-~GiDi~- 295 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIML-LHSRFTEKDRAKKEAELLEEM-KKNEKFVIVA-TQVIE-ASLDIS- 295 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEE-EECCCCHHHHHHHHHHHHHHh-cCCCCeEEEE-Ccchh-ceeccC-
Confidence 1579999999999999999999887764 554 57643 22 47889 8888888877 67884 899995
Q ss_pred CCEEEeCCCCCCHHHHHHHHhccccCCCc----ceEEEEecc
Q 008235 501 YEVVIVPDFIISMKNYVEILTSMARHTVS----GILHSFFTK 538 (573)
Q Consensus 501 v~~VI~~d~P~s~~~YiqR~GR~gR~g~~----G~~i~~~~~ 538 (573)
+++||++..| .++|+||+||+||.|+. |.+++|...
T Consensus 296 ~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 296 ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 8999999877 78999999999999864 366766653
No 66
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=7.6e-34 Score=310.87 Aligned_cols=309 Identities=10% Similarity=0.028 Sum_probs=213.0
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~ 282 (573)
+++|..+...+..| .|+.++|| +|||++|++|++...+ .++.++||+||++||.|..+++..+ ..+
T Consensus 72 ydVQlig~l~l~~G--~Iaem~TG-eGKTLta~Lpa~l~aL----------~g~~V~VVTpn~yLA~Rdae~m~~l~~~L 138 (762)
T TIGR03714 72 YDVQVLGAIVLHQG--NIAEMKTG-EGKTLTATMPLYLNAL----------TGKGAMLVTTNDYLAKRDAEEMGPVYEWL 138 (762)
T ss_pred cHHHHHHHHHhcCC--ceeEecCC-cchHHHHHHHHHHHhh----------cCCceEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 77777776666666 69999999 9999999999876554 3557999999999999999999987 556
Q ss_pred CcEEEEeCCCCC---HHHHHHHhhcCCCcEEEeCHHHH-HHHHHc------CCCCCCCccEEEEeCcccccC--------
Q 008235 283 GIHTVSLHPGAA---IDHQITGLRSCEPEFLVSTPERL-LKLVSL------KAIDVSGVSLLVVDRLDSLSK-------- 344 (573)
Q Consensus 283 ~i~~~~~~gg~~---~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~------~~~~l~~l~~lViDEad~ll~-------- 344 (573)
|+++.++++|.. ...+.+.... +++|++|||++| .++|.. ....++.+.++||||||.|+-
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y-~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpli 217 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIY-NSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLV 217 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhC-CCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCee
Confidence 999998877632 3333344444 799999999999 565543 234578999999999999854
Q ss_pred -----------cchHHHHHHhcCCC--------Cc---------------------------------------------
Q 008235 345 -----------GDTLSLIRQSISGK--------PH--------------------------------------------- 360 (573)
Q Consensus 345 -----------~~~l~~Il~~l~~~--------~q--------------------------------------------- 360 (573)
+..+..+...+.++ ..
T Consensus 218 isg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~ 297 (762)
T TIGR03714 218 ISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKR 297 (762)
T ss_pred eeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhc
Confidence 11222233333211 11
Q ss_pred ----------------------------------------------------------------EEEEeccCCccHHHHH
Q 008235 361 ----------------------------------------------------------------TVVFNDCLTYTSVPAV 376 (573)
Q Consensus 361 ----------------------------------------------------------------~l~~SAT~~~~~~~~~ 376 (573)
+.++|.|......++.
T Consensus 298 d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~ 377 (762)
T TIGR03714 298 NKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI 377 (762)
T ss_pred CCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH
Confidence 1123333222222222
Q ss_pred HHHhcCCceEEEcCCCccccccceEE-EEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHH
Q 008235 377 QNLLLGSINRLSLNQSVASQSACIIQ-SVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC 455 (573)
Q Consensus 377 ~~~l~~~~~~i~~~~~~~~~~~~i~~-~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~ 455 (573)
..| +-+ ++.+.... +.....+ ..+++. ..+|+..+...+...... +.++||||+|+..++.++..|..
T Consensus 378 ~iY-~l~--v~~IPt~k--p~~r~d~~d~i~~~-~~~K~~ai~~~i~~~~~~-----~~pvLIft~s~~~se~ls~~L~~ 446 (762)
T TIGR03714 378 ETY-SLS--VVKIPTNK--PIIRIDYPDKIYAT-LPEKLMATLEDVKEYHET-----GQPVLLITGSVEMSEIYSELLLR 446 (762)
T ss_pred HHh-CCC--EEEcCCCC--CeeeeeCCCeEEEC-HHHHHHHHHHHHHHHhhC-----CCCEEEEECcHHHHHHHHHHHHH
Confidence 111 111 22222211 1111111 123443 678998888888775433 46999999999999999999999
Q ss_pred CCCCeeeecCCCHHHH--HHHHHhcCCC-CCeEEEEeccccCCCccC---------CCCEEEeCCCCCCHHHHHHHHhcc
Q 008235 456 KGYSISTGSNCIVSHI--KNSVEADGRK-RPAVSMIDKDHISTAELE---------EYEVVIVPDFIISMKNYVEILTSM 523 (573)
Q Consensus 456 ~g~~~~~~~~~~~~~~--l~~F~~~g~~-~~l~~lvd~~s~rGlDip---------~v~~VI~~d~P~s~~~YiqR~GR~ 523 (573)
.|+++..+ ||++.+. ..-+ ..|+. .++++ ||++ .||+||+ ++.+|++|++|....+ +||+|||
T Consensus 447 ~gi~~~~L-~a~~~~~E~~ii~-~ag~~g~VlIA-TdmA-gRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRt 521 (762)
T TIGR03714 447 EGIPHNLL-NAQNAAKEAQIIA-EAGQKGAVTVA-TSMA-GRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRS 521 (762)
T ss_pred CCCCEEEe-cCCChHHHHHHHH-HcCCCCeEEEE-cccc-ccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcc
Confidence 99999875 7766542 1112 34444 44444 6899 4999999 9999999999998777 9999999
Q ss_pred ccCCCcceEEEEeccccHH
Q 008235 524 ARHTVSGILHSFFTKDDAA 542 (573)
Q Consensus 524 gR~g~~G~~i~~~~~~d~~ 542 (573)
||.|.+|.+++|++.+|.-
T Consensus 522 GRqG~~G~s~~~is~eD~l 540 (762)
T TIGR03714 522 GRQGDPGSSQFFVSLEDDL 540 (762)
T ss_pred cCCCCceeEEEEEccchhh
Confidence 9999999999999987643
No 67
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-33 Score=286.80 Aligned_cols=322 Identities=13% Similarity=0.090 Sum_probs=234.3
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHh
Q 008235 198 DNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (573)
Q Consensus 198 p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~ 277 (573)
|.-+.+..+|......++.+ |+|++.||| -|||++.++-+..++... .+ .+|+|+||+.|+.|..+.|.
T Consensus 11 p~~ie~R~YQ~~i~a~al~~-NtLvvlPTG-LGKT~IA~~V~~~~l~~~--------~~-kvlfLAPTKPLV~Qh~~~~~ 79 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK-NTLVVLPTG-LGKTFIAAMVIANRLRWF--------GG-KVLFLAPTKPLVLQHAEFCR 79 (542)
T ss_pred cccccHHHHHHHHHHHHhhc-CeEEEecCC-ccHHHHHHHHHHHHHHhc--------CC-eEEEecCCchHHHHHHHHHH
Confidence 33344488898888777766 999999999 999999988888777765 34 89999999999999999999
Q ss_pred hhhcC-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHH
Q 008235 278 PLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQ 353 (573)
Q Consensus 278 ~l~~~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~ 353 (573)
.+... .-.++.+.|....++...... ..+|+|+||..+..-|..+.+++.++.+||+|||||-.. +-.+.+-+-
T Consensus 80 ~v~~ip~~~i~~ltGev~p~~R~~~w~--~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~ 157 (542)
T COG1111 80 KVTGIPEDEIAALTGEVRPEEREELWA--KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYL 157 (542)
T ss_pred HHhCCChhheeeecCCCChHHHHHHHh--hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHH
Confidence 98543 456788999887765433333 368999999999988999999999999999999999888 344444333
Q ss_pred hcCCCCcEEEEeccCCccHH---HHHHHHhcCCc-------------------eEEEcCCC-------------------
Q 008235 354 SISGKPHTVVFNDCLTYTSV---PAVQNLLLGSI-------------------NRLSLNQS------------------- 392 (573)
Q Consensus 354 ~l~~~~q~l~~SAT~~~~~~---~~~~~~l~~~~-------------------~~i~~~~~------------------- 392 (573)
....++.++++|||...+.. +++..+.-..+ ..+.+...
T Consensus 158 ~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk 237 (542)
T COG1111 158 RSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLK 237 (542)
T ss_pred HhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHH
Confidence 44567789999999765432 22222211100 01111100
Q ss_pred ----------ccc--------cc-------cc-----------------------------eE-----------------
Q 008235 393 ----------VAS--------QS-------AC-----------------------------II----------------- 401 (573)
Q Consensus 393 ----------~~~--------~~-------~~-----------------------------i~----------------- 401 (573)
... .. .+ |.
T Consensus 238 ~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~ 317 (542)
T COG1111 238 PLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGG 317 (542)
T ss_pred HHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccc
Confidence 000 00 00 00
Q ss_pred --------------------EEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCee
Q 008235 402 --------------------QSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461 (573)
Q Consensus 402 --------------------~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~ 461 (573)
.....+.-...|+..+.+++...+..+. +.++|||++.+++|+.+...|...|+.+.
T Consensus 318 sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~---~~RvIVFT~yRdTae~i~~~L~~~~~~~~ 394 (542)
T COG1111 318 SKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNG---DSRVIVFTEYRDTAEEIVNFLKKIGIKAR 394 (542)
T ss_pred hHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCC---CceEEEEehhHhHHHHHHHHHHhcCCcce
Confidence 0000111123466667777777776666 78999999999999999999999998874
Q ss_pred -eecC-C------CHH-----HHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCC
Q 008235 462 -TGSN-C------IVS-----HIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTV 528 (573)
Q Consensus 462 -~~~~-~------~~~-----~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~ 528 (573)
.++. + .|+ ++++.| +.|..++|++ |.+.. .|||||+|++||.|++-.|...+|||.|||||. +
T Consensus 395 ~rFiGQa~r~~~~GMsQkeQ~eiI~~F-r~Ge~nVLVa-TSVgE-EGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r 470 (542)
T COG1111 395 VRFIGQASREGDKGMSQKEQKEIIDQF-RKGEYNVLVA-TSVGE-EGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-R 470 (542)
T ss_pred eEEeeccccccccccCHHHHHHHHHHH-hcCCceEEEE-ccccc-ccCCCCcccEEEEecCCcHHHHHHHhhCccccC-C
Confidence 2222 1 122 389999 9999999777 33553 599999999999999999999999999999995 8
Q ss_pred cceEEEEeccc
Q 008235 529 SGILHSFFTKD 539 (573)
Q Consensus 529 ~G~~i~~~~~~ 539 (573)
.|.+++|++..
T Consensus 471 ~Grv~vLvt~g 481 (542)
T COG1111 471 KGRVVVLVTEG 481 (542)
T ss_pred CCeEEEEEecC
Confidence 99999999876
No 68
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=7.9e-33 Score=317.09 Aligned_cols=325 Identities=12% Similarity=0.078 Sum_probs=234.8
Q ss_pred CCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHH
Q 008235 194 GVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (573)
Q Consensus 194 g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~ 273 (573)
.+..|+.+.+.++|...+..++.+ |+|+++||| +|||+++++++...+. . .+.++|||+||++|+.|+.
T Consensus 7 ~~~~~~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG-~GKT~~a~~~i~~~l~-~--------~~~~vLvl~Pt~~L~~Q~~ 75 (773)
T PRK13766 7 PLIKPNTIEARLYQQLLAATALKK-NTLVVLPTG-LGKTAIALLVIAERLH-K--------KGGKVLILAPTKPLVEQHA 75 (773)
T ss_pred CccCcCcCCccHHHHHHHHHHhcC-CeEEEcCCC-ccHHHHHHHHHHHHHH-h--------CCCeEEEEeCcHHHHHHHH
Confidence 445556666799999999988887 999999999 9999999999888773 1 3668999999999999999
Q ss_pred HHHhhhhcC-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHH
Q 008235 274 SVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLS 349 (573)
Q Consensus 274 ~~~~~l~~~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~ 349 (573)
+.++.+... +..+..++|+..... ...+.. +.+|+|+||+.+...+..+.+.+.++++|||||||++.. ...+.
T Consensus 76 ~~~~~~~~~~~~~v~~~~g~~~~~~-r~~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~ 153 (773)
T PRK13766 76 EFFRKFLNIPEEKIVVFTGEVSPEK-RAELWE-KAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIA 153 (773)
T ss_pred HHHHHHhCCCCceEEEEeCCCCHHH-HHHHHh-CCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHH
Confidence 999886332 457778888876654 333444 579999999999888877888899999999999999887 33333
Q ss_pred HHHHhcCCCCcEEEEeccCCccH---HHHHHHHhcCC-------------------ceEEEcCCCc--------------
Q 008235 350 LIRQSISGKPHTVVFNDCLTYTS---VPAVQNLLLGS-------------------INRLSLNQSV-------------- 393 (573)
Q Consensus 350 ~Il~~l~~~~q~l~~SAT~~~~~---~~~~~~~l~~~-------------------~~~i~~~~~~-------------- 393 (573)
..+......+++++||||..... ..++..+.... +..+.+....
T Consensus 154 ~~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~ 233 (773)
T PRK13766 154 ERYHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALK 233 (773)
T ss_pred HHHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHH
Confidence 33333455678999999974332 12222211000 0000000000
Q ss_pred ---------ccc---c------------cceEEE----------------------------------------------
Q 008235 394 ---------ASQ---S------------ACIIQS---------------------------------------------- 403 (573)
Q Consensus 394 ---------~~~---~------------~~i~~~---------------------------------------------- 403 (573)
... . ..+.+.
T Consensus 234 ~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~ 313 (773)
T PRK13766 234 DRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREE 313 (773)
T ss_pred HHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhh
Confidence 000 0 000000
Q ss_pred -------------------------EEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCC
Q 008235 404 -------------------------VNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458 (573)
Q Consensus 404 -------------------------~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~ 458 (573)
+..+.....|+..|.++|...+.... +.++||||+++..|+.|+..|...|+
T Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~---~~kvlIF~~~~~t~~~L~~~L~~~~~ 390 (773)
T PRK13766 314 ARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNP---DSRIIVFTQYRDTAEKIVDLLEKEGI 390 (773)
T ss_pred ccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCC---CCeEEEEeCcHHHHHHHHHHHHhCCC
Confidence 00011224567777777777765444 68999999999999999999999999
Q ss_pred CeeeecCCC-------------HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhcccc
Q 008235 459 SISTGSNCI-------------VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMAR 525 (573)
Q Consensus 459 ~~~~~~~~~-------------~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR 525 (573)
.+..+ ||. +..++++| ++|...++++ +|+.+ +|+|+|++++||+||+|.+...|+||+||+||
T Consensus 391 ~~~~~-~g~~~~~~~~~~~~~~r~~~~~~F-~~g~~~vLva-T~~~~-eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR 466 (773)
T PRK13766 391 KAVRF-VGQASKDGDKGMSQKEQIEILDKF-RAGEFNVLVS-TSVAE-EGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGR 466 (773)
T ss_pred ceEEE-EccccccccCCCCHHHHHHHHHHH-HcCCCCEEEE-CChhh-cCCCcccCCEEEEeCCCCCHHHHHHHhcccCc
Confidence 88764 432 44589999 8898888777 56774 79999999999999999999999999999999
Q ss_pred CCCcceEEEEeccc
Q 008235 526 HTVSGILHSFFTKD 539 (573)
Q Consensus 526 ~g~~G~~i~~~~~~ 539 (573)
.|. |.++.|+...
T Consensus 467 ~~~-~~v~~l~~~~ 479 (773)
T PRK13766 467 QEE-GRVVVLIAKG 479 (773)
T ss_pred CCC-CEEEEEEeCC
Confidence 864 8888888754
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.6e-32 Score=285.63 Aligned_cols=292 Identities=9% Similarity=0.032 Sum_probs=198.8
Q ss_pred HHHHHHHHHhcCCc--EEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh-c-
Q 008235 206 WGIEFWKCYSSAKD--ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-A- 281 (573)
Q Consensus 206 iQ~~aip~il~g~d--vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~-~- 281 (573)
.|.++|+.+.++.+ ++++|||| ||||++|++|++. ....++|++||++|+.|+++.++.+. .
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTG-sGKT~~~~~~~l~-------------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTG-AGKTLAWLTPLLH-------------GENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCC-CCHHHHHHHHHHH-------------cCCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 49999999999974 78899999 9999999999883 13358999999999999999888862 1
Q ss_pred ---CCcEEEEeCCCCCHH--HH-----------------HHHhhcCCCcEEEeCHHHHHHHHHcCC--------CCCCCc
Q 008235 282 ---FGIHTVSLHPGAAID--HQ-----------------ITGLRSCEPEFLVSTPERLLKLVSLKA--------IDVSGV 331 (573)
Q Consensus 282 ---~~i~~~~~~gg~~~~--~~-----------------~~~l~~~~~~IlV~TP~rL~~~l~~~~--------~~l~~l 331 (573)
.++.+..+.|....+ .. ...+....++|+++||+.|..++.... ..+.++
T Consensus 67 ~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 67 KPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 256666666642211 00 011122268999999999977665321 125789
Q ss_pred cEEEEeCcccccC--c------chHHHHHHhcCCCCcEEEEeccCCccHHHHHHHH--hcCCceEEEcCCCc--------
Q 008235 332 SLLVVDRLDSLSK--G------DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNL--LLGSINRLSLNQSV-------- 393 (573)
Q Consensus 332 ~~lViDEad~ll~--~------~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~--l~~~~~~i~~~~~~-------- 393 (573)
++|||||+|.+-. . -.+..++.......+++++|||+++.+...+... ++.|+..+.-....
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~ 226 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELE 226 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhh
Confidence 9999999998764 1 1233333333445799999999998877777665 55554222211000
Q ss_pred --------cccccceEEEEEEcCChhHHHHHHH---HHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCC--Ce
Q 008235 394 --------ASQSACIIQSVNVCASDEEKILKGI---QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY--SI 460 (573)
Q Consensus 394 --------~~~~~~i~~~~~~~~~~~~k~~~l~---~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~--~~ 460 (573)
....+.+.+.+... ...+...+. +.+.+.+.... +.++||||||+..|+.++..|+..++ .+
T Consensus 227 ~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~l~~l~~~i~~~~~~~~---~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~ 301 (357)
T TIGR03158 227 ADNKTQSFRPVLPPVELELIPA--PDFKEEELSELAEEVIERFRQLP---GERGAIILDSLDEVNRLSDLLQQQGLGDDI 301 (357)
T ss_pred ccccccccceeccceEEEEEeC--CchhHHHHHHHHHHHHHHHhccC---CCeEEEEECCHHHHHHHHHHHhhhCCCceE
Confidence 00113566666552 233333333 33333332222 57999999999999999999998654 45
Q ss_pred eeecCCCHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccc
Q 008235 461 STGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMA 524 (573)
Q Consensus 461 ~~~~~~~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~g 524 (573)
.. +||.+.+..+. +.++..++++ +|++ .|||||+.+ +|| ++ |.+.++|+||+||||
T Consensus 302 ~~-l~g~~~~~~R~--~~~~~~iLVa-Tdv~-~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 302 GR-ITGFAPKKDRE--RAMQFDILLG-TSTV-DVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred Ee-eecCCCHHHHH--HhccCCEEEE-ecHH-hcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 43 68877665433 4566777776 6898 499999987 666 55 899999999999997
No 70
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.5e-32 Score=308.09 Aligned_cols=341 Identities=12% Similarity=0.167 Sum_probs=249.4
Q ss_pred HHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE
Q 008235 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (573)
Q Consensus 183 ~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil 262 (573)
-..+..++...|+..+ .+.|.+|+..+.+|+|||+++||| ||||++|++|++++++..+ ..++|+|
T Consensus 56 ~~~l~~~l~~~g~~~l-----Y~HQ~~A~~~~~~G~~vvVtTgTg-SGKTe~FllPIld~~l~~~--------~a~AL~l 121 (851)
T COG1205 56 DESLKSALVKAGIERL-----YSHQVDALRLIREGRNVVVTTGTG-SGKTESFLLPILDHLLRDP--------SARALLL 121 (851)
T ss_pred hhHHHHHHHHhccccc-----cHHHHHHHHHHHCCCCEEEECCCC-CchhHHHHHHHHHHHhhCc--------CccEEEE
Confidence 4445667777788887 999999999999999999999999 9999999999999999874 3489999
Q ss_pred cccHHHHHHHHHHHhhh-hcCC--cEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC----CCCCCccEEE
Q 008235 263 VSSQEKAAKVRSVCKPL-KAFG--IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA----IDVSGVSLLV 335 (573)
Q Consensus 263 ~PtreLa~Qi~~~~~~l-~~~~--i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~----~~l~~l~~lV 335 (573)
.||++||....+.++++ ..++ +.+..+.|.+...+....+.+ .|+||++||..|..++.... ..++++++||
T Consensus 122 YPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~-pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lV 200 (851)
T COG1205 122 YPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRN-PPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLV 200 (851)
T ss_pred echhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhC-CCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEE
Confidence 99999999999989887 4444 777777777776655455555 89999999999988665433 4468899999
Q ss_pred EeCcccccC--cchHHHHH----Hhc---CCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEE
Q 008235 336 VDRLDSLSK--GDTLSLIR----QSI---SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNV 406 (573)
Q Consensus 336 iDEad~ll~--~~~l~~Il----~~l---~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~ 406 (573)
|||+|.+-. ..++..++ ..+ +...|+++.|||+.. ..+++..+++..... .+... .......+.+..
T Consensus 201 vDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~n-p~e~~~~l~~~~f~~-~v~~~--g~~~~~~~~~~~ 276 (851)
T COG1205 201 VDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLAN-PGEFAEELFGRDFEV-PVDED--GSPRGLRYFVRR 276 (851)
T ss_pred EecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccC-hHHHHHHhcCCccee-eccCC--CCCCCceEEEEe
Confidence 999998766 33333333 333 468999999999987 566777887777533 24332 222233333333
Q ss_pred cC-----C---hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHH----HHHHHCC----CCeeeecCC----
Q 008235 407 CA-----S---DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLV----STLKCKG----YSISTGSNC---- 466 (573)
Q Consensus 407 ~~-----~---~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~----~~L~~~g----~~~~~~~~~---- 466 (573)
-+ . .......+..++...... +-++|+|+.++..|+.++ ..+...+ ..+.. +++
T Consensus 277 ~p~~~~~~~~~r~s~~~~~~~~~~~~~~~-----~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~-~~~~~~~ 350 (851)
T COG1205 277 EPPIRELAESIRRSALAELATLAALLVRN-----GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVST-YRAGLHR 350 (851)
T ss_pred CCcchhhhhhcccchHHHHHHHHHHHHHc-----CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheee-ccccCCH
Confidence 22 0 124444555555555554 459999999999999997 4555555 22332 344
Q ss_pred -CHHHHHHHHHhcCCCCCeEEEEeccccC-CCccCCCCEEEeCCCCC-CHHHHHHHHhccccCCCcceEEEEecc--ccH
Q 008235 467 -IVSHIKNSVEADGRKRPAVSMIDKDHIS-TAELEEYEVVIVPDFII-SMKNYVEILTSMARHTVSGILHSFFTK--DDA 541 (573)
Q Consensus 467 -~~~~~l~~F~~~g~~~~l~~lvd~~s~r-GlDip~v~~VI~~d~P~-s~~~YiqR~GR~gR~g~~G~~i~~~~~--~d~ 541 (573)
++..+...| ++|+...+++ +.+ ++ |+||.+++.||+++.|. +..+|+||+||+||.++.+..+.+... -|.
T Consensus 351 ~er~~ie~~~-~~g~~~~~~s-t~A--lelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~ 426 (851)
T COG1205 351 EERRRIEAEF-KEGELLGVIA-TNA--LELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDS 426 (851)
T ss_pred HHHHHHHHHH-hcCCccEEec-chh--hhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccch
Confidence 345578889 8888888655 322 34 99999999999999999 899999999999999977777666653 355
Q ss_pred HHHHHHHHHHH
Q 008235 542 AHAGQMIEILE 552 (573)
Q Consensus 542 ~~~~~l~~~l~ 552 (573)
.++..-..+++
T Consensus 427 yy~~~p~~~~~ 437 (851)
T COG1205 427 YYLRHPEELLE 437 (851)
T ss_pred hhhhCcHhhhh
Confidence 55555555444
No 71
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=3.2e-32 Score=278.64 Aligned_cols=336 Identities=13% Similarity=0.150 Sum_probs=256.4
Q ss_pred ccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHH-HhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhch
Q 008235 169 CEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKC-YSSAKDILETSGSSSTIVQIAWIVATAADSIARK 247 (573)
Q Consensus 169 ~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~-il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~ 247 (573)
-++.++|++| ...|...|+... .|+|..|+.. ++.|.|++++++|+ |||||+--+.-+..++..
T Consensus 196 vdeLdipe~f--------k~~lk~~G~~eL-----lPVQ~laVe~GLLeG~nllVVSaTa-sGKTLIgElAGi~~~l~~- 260 (830)
T COG1202 196 VDELDIPEKF--------KRMLKREGIEEL-----LPVQVLAVEAGLLEGENLLVVSATA-SGKTLIGELAGIPRLLSG- 260 (830)
T ss_pred ccccCCcHHH--------HHHHHhcCccee-----cchhhhhhhhccccCCceEEEeccC-CCcchHHHhhCcHHHHhC-
Confidence 4566777776 555677899998 9999999987 67899999999999 999999988888777753
Q ss_pred hccCCCCCCcEEEEEcccHHHHHHHHHHHhh-hhcCCcEEEEeCCCCCHHHHHH---HhhcCCCcEEEeCHHHHHHHHHc
Q 008235 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQIT---GLRSCEPEFLVSTPERLLKLVSL 323 (573)
Q Consensus 248 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~-l~~~~i~~~~~~gg~~~~~~~~---~l~~~~~~IlV~TP~rL~~~l~~ 323 (573)
|.+.|+|||..+||.|-++.|+. +..+|+++..-+|-.-...... .-.....||||+|-+-+-.+|+.
T Consensus 261 --------g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt 332 (830)
T COG1202 261 --------GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT 332 (830)
T ss_pred --------CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc
Confidence 77899999999999999999977 6888998877776443322211 11112579999999999877777
Q ss_pred CCCCCCCccEEEEeCcccccC---cchHHHHHHhc---CCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccc
Q 008235 324 KAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSI---SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQS 397 (573)
Q Consensus 324 ~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l---~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ 397 (573)
+ ..+.++..+||||+|.+-+ .+.+.-++..+ -+..|++.+|||..+ -.++++.+-..++ ...-. +
T Consensus 333 g-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgN-p~elA~~l~a~lV-~y~~R------P 403 (830)
T COG1202 333 G-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGN-PEELAKKLGAKLV-LYDER------P 403 (830)
T ss_pred C-CcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCC-hHHHHHHhCCeeE-eecCC------C
Confidence 6 7799999999999998777 55666665544 468999999999987 5677877765553 22211 1
Q ss_pred cceEEEEEEcCChhHHHHHHHHHHHHHhccCC-CCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCC----CHHHHH
Q 008235 398 ACIIQSVNVCASDEEKILKGIQVLDHAYGDHF-HSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC----IVSHIK 472 (573)
Q Consensus 398 ~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~-~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~l 472 (573)
-.++.++++|.++.+|...+..+.+.-+.... ..-.++||||++|+..|+.|+..|...|+.+...|.| +|..+.
T Consensus 404 VplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE 483 (830)
T COG1202 404 VPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVE 483 (830)
T ss_pred CChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHH
Confidence 24777888888889999888888775443221 0114799999999999999999999999999875444 455688
Q ss_pred HHHHhcCCCCCeEEEEeccccCCCccCCCCEEEe---CCC-CCCHHHHHHHHhccccCC--CcceEEEEeccc
Q 008235 473 NSVEADGRKRPAVSMIDKDHISTAELEEYEVVIV---PDF-IISMKNYVEILTSMARHT--VSGILHSFFTKD 539 (573)
Q Consensus 473 ~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~---~d~-P~s~~~YiqR~GR~gR~g--~~G~~i~~~~~~ 539 (573)
..| .++...++++ | ++-++|+|+|.-++|+- .+. --++.+|.|++||+||.+ ..|.+++++.|.
T Consensus 484 ~~F-~~q~l~~VVT-T-AAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 484 RAF-AAQELAAVVT-T-AALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHH-hcCCcceEee-h-hhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 899 8888877665 3 23235999997765531 111 247899999999999998 469999999875
No 72
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1e-31 Score=299.26 Aligned_cols=311 Identities=15% Similarity=0.106 Sum_probs=228.3
Q ss_pred CHHHHHH-HHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcC
Q 008235 204 NSWGIEF-WKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF 282 (573)
Q Consensus 204 t~iQ~~a-ip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~ 282 (573)
.|-|+.+ .+.+..|+|+|++|||| ||||+.+++.++..+... +.++|||||+|+||.|+++.++.|..+
T Consensus 33 ~~~qq~av~~~~~~~~N~li~aPTg-sGKTlIA~lai~~~l~~~---------~~k~vYivPlkALa~Ek~~~~~~~~~~ 102 (766)
T COG1204 33 FNPQQEAVEKGLLSDENVLISAPTG-SGKTLIALLAILSTLLEG---------GGKVVYIVPLKALAEEKYEEFSRLEEL 102 (766)
T ss_pred hHHHHHHhhccccCCCcEEEEcCCC-CchHHHHHHHHHHHHHhc---------CCcEEEEeChHHHHHHHHHHhhhHHhc
Confidence 4555555 55566679999999999 999999999999988764 568999999999999999999988888
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcC---
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSIS--- 356 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~--- 356 (573)
|+++...+|+..... ..+. +++|||+||+++..++++....+..+++|||||+|.+.+ .+.++.|+....
T Consensus 103 GirV~~~TgD~~~~~--~~l~--~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~ 178 (766)
T COG1204 103 GIRVGISTGDYDLDD--ERLA--RYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN 178 (766)
T ss_pred CCEEEEecCCcccch--hhhc--cCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhC
Confidence 999999999987655 2333 589999999999998888777889999999999998888 677777777664
Q ss_pred CCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChh-----HHHHHHHHHHHHHhccCCCC
Q 008235 357 GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDE-----EKILKGIQVLDHAYGDHFHS 431 (573)
Q Consensus 357 ~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~-----~k~~~l~~~L~~~~~~~~~~ 431 (573)
...|++.+|||+|+ ..+++..+-.+++ .-...+..........+.+....... .....++..+...+..
T Consensus 179 ~~~rivgLSATlpN-~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~---- 252 (766)
T COG1204 179 ELIRIVGLSATLPN-AEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAE---- 252 (766)
T ss_pred cceEEEEEeeecCC-HHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhc----
Confidence 44799999999998 6677766555443 11111111111222334444443111 1233344444444443
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHC------------------CCC------------------eeeecCCC-----HHH
Q 008235 432 EPLKVLYIVGKDSKFQNLVSTLKCK------------------GYS------------------ISTGSNCI-----VSH 470 (573)
Q Consensus 432 ~~~k~lIF~~s~~~~~~l~~~L~~~------------------g~~------------------~~~~~~~~-----~~~ 470 (573)
++++||||+|+..+...+..|... .+. -+.+||+. |.-
T Consensus 253 -~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~ 331 (766)
T COG1204 253 -GGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQL 331 (766)
T ss_pred -CCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHH
Confidence 569999999999999999888731 001 01345643 444
Q ss_pred HHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEE----eCC-----CCCCHHHHHHHHhccccCCC--cceEEEEecc
Q 008235 471 IKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVI----VPD-----FIISMKNYVEILTSMARHTV--SGILHSFFTK 538 (573)
Q Consensus 471 ~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI----~~d-----~P~s~~~YiqR~GR~gR~g~--~G~~i~~~~~ 538 (573)
+.+.| +.|..+++++ |-+. |.|++.|.-.+|| -|+ .+-++-+|+|++|||||.|- .|.++++.+.
T Consensus 332 vE~~F-r~g~ikVlv~-TpTL-A~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~ 407 (766)
T COG1204 332 VEDAF-RKGKIKVLVS-TPTL-AAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATS 407 (766)
T ss_pred HHHHH-hcCCceEEEe-chHH-hhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecC
Confidence 78889 9999999888 4233 5699999877776 466 56688999999999999994 5777777733
No 73
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=9.9e-32 Score=301.12 Aligned_cols=314 Identities=13% Similarity=0.105 Sum_probs=237.7
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG 283 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~ 283 (573)
.|-|.++|..++.|+|+++..||| .||+|+|.||++- .++.+|||+|...|. .+++..|...+
T Consensus 266 R~~Q~eaI~~~l~Gkd~fvlmpTG-~GKSLCYQlPA~l-------------~~gitvVISPL~SLm---~DQv~~L~~~~ 328 (941)
T KOG0351|consen 266 RPNQLEAINATLSGKDCFVLMPTG-GGKSLCYQLPALL-------------LGGVTVVISPLISLM---QDQVTHLSKKG 328 (941)
T ss_pred ChhHHHHHHHHHcCCceEEEeecC-CceeeEeeccccc-------------cCCceEEeccHHHHH---HHHHHhhhhcC
Confidence 779999999999999999999999 9999999999982 356899999977775 55666666669
Q ss_pred cEEEEeCCCCCHHHH---HHHhhcC--CCcEEEeCHHHHHHH--HHcCCCCCCC---ccEEEEeCcccccC-----cchH
Q 008235 284 IHTVSLHPGAAIDHQ---ITGLRSC--EPEFLVSTPERLLKL--VSLKAIDVSG---VSLLVVDRLDSLSK-----GDTL 348 (573)
Q Consensus 284 i~~~~~~gg~~~~~~---~~~l~~~--~~~IlV~TP~rL~~~--l~~~~~~l~~---l~~lViDEad~ll~-----~~~l 348 (573)
|...++.++.....+ ...|.++ .++|+.-||+.+... +......+.. +.++||||||++.. ++..
T Consensus 329 I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Y 408 (941)
T KOG0351|consen 329 IPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSY 408 (941)
T ss_pred cceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHH
Confidence 999999999887643 4556665 589999999988532 2222233444 89999999999987 3333
Q ss_pred ---HHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHh
Q 008235 349 ---SLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAY 425 (573)
Q Consensus 349 ---~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~ 425 (573)
..+....+ ...++.+|||.+..++.-+-..|+-+-..+ +... ....|+...+..-.. ... +..++....
T Consensus 409 k~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~-~~~s--fnR~NL~yeV~~k~~-~~~---~~~~~~~~~ 480 (941)
T KOG0351|consen 409 KRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPEL-FKSS--FNRPNLKYEVSPKTD-KDA---LLDILEESK 480 (941)
T ss_pred HHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcce-eccc--CCCCCceEEEEeccC-ccc---hHHHHHHhh
Confidence 33344443 488999999999988877666665332112 2221 334456555554331 222 223333333
Q ss_pred ccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCC----CHHHHHHHHHhcCCCCCeEEEEeccccC-CCccCC
Q 008235 426 GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC----IVSHIKNSVEADGRKRPAVSMIDKDHIS-TAELEE 500 (573)
Q Consensus 426 ~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~l~~F~~~g~~~~l~~lvd~~s~r-GlDip~ 500 (573)
..+. ...+||||.++.+|+.++..|+..|+.+..+|.| +|..+...| ..++.+++|++| + .. |||.|+
T Consensus 481 ~~~~---~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w-~~~~~~VivATV--A-FGMGIdK~D 553 (941)
T KOG0351|consen 481 LRHP---DQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAW-MSDKIRVIVATV--A-FGMGIDKPD 553 (941)
T ss_pred hcCC---CCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHH-hcCCCeEEEEEe--e-ccCCCCCCc
Confidence 3333 6899999999999999999999999988865444 466689999 888899988854 4 24 999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHH
Q 008235 501 YEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIE 549 (573)
Q Consensus 501 v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~ 549 (573)
|+.||||++|.+++.|+|.+||+||+|....|++|+...|...++.++.
T Consensus 554 VR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 554 VRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred eeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877776654
No 74
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=8.9e-32 Score=266.64 Aligned_cols=320 Identities=9% Similarity=0.045 Sum_probs=231.6
Q ss_pred CCHHHHHHHHHHhcC-CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc
Q 008235 203 VNSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA 281 (573)
Q Consensus 203 ~t~iQ~~aip~il~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~ 281 (573)
-++.|.+|+.++..+ .||.++.||| +||+|+|.||.|- .+...||++|..+|....-+++..|
T Consensus 21 Ks~LQE~A~~c~VK~k~DVyVsMPTG-aGKSLCyQLPaL~-------------~~gITIV~SPLiALIkDQiDHL~~L-- 84 (641)
T KOG0352|consen 21 KSRLQEQAINCIVKRKCDVYVSMPTG-AGKSLCYQLPALV-------------HGGITIVISPLIALIKDQIDHLKRL-- 84 (641)
T ss_pred cChHHHHHHHHHHhccCcEEEeccCC-CchhhhhhchHHH-------------hCCeEEEehHHHHHHHHHHHHHHhc--
Confidence 377999999999987 8999999999 9999999999984 2448999999888876655666555
Q ss_pred CCcEEEEeCCCCCHHHHH---HHhhcC--CCcEEEeCHHHHH-----HHHHcCCCCCCCccEEEEeCcccccC-----cc
Q 008235 282 FGIHTVSLHPGAAIDHQI---TGLRSC--EPEFLVSTPERLL-----KLVSLKAIDVSGVSLLVVDRLDSLSK-----GD 346 (573)
Q Consensus 282 ~~i~~~~~~gg~~~~~~~---~~l~~~--~~~IlV~TP~rL~-----~~l~~~~~~l~~l~~lViDEad~ll~-----~~ 346 (573)
.+.+-++....+..+.- ..|.+. ...||+-||+... ++| ++...-+-+.|+||||||++.+ .+
T Consensus 85 -KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lL-n~L~~r~~L~Y~vVDEAHCVSQWGHDFRP 162 (641)
T KOG0352|consen 85 -KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLL-NGLANRDVLRYIVVDEAHCVSQWGHDFRP 162 (641)
T ss_pred -CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHH-HHHhhhceeeeEEechhhhHhhhccccCc
Confidence 67777777766654432 333332 4568999998642 222 2223345589999999999987 33
Q ss_pred hHHH---HHHhcCCCCcEEEEeccCCccHHHHHH--HHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHH
Q 008235 347 TLSL---IRQSISGKPHTVVFNDCLTYTSVPAVQ--NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVL 421 (573)
Q Consensus 347 ~l~~---Il~~l~~~~q~l~~SAT~~~~~~~~~~--~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L 421 (573)
+... +.+.+ +....+.++||.++.+++-+- .-|+.|+..+....- ..|+-.-+..-..-.+-+..|.++-
T Consensus 163 DYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F----R~NLFYD~~~K~~I~D~~~~LaDF~ 237 (641)
T KOG0352|consen 163 DYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF----RDNLFYDNHMKSFITDCLTVLADFS 237 (641)
T ss_pred chhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch----hhhhhHHHHHHHHhhhHhHhHHHHH
Confidence 3333 33333 567789999999998877443 346788643333221 1122111111111233445555555
Q ss_pred HHHhccCC------CCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecC----CCHHHHHHHHHhcCCCCCeEEEEecc
Q 008235 422 DHAYGDHF------HSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSN----CIVSHIKNSVEADGRKRPAVSMIDKD 491 (573)
Q Consensus 422 ~~~~~~~~------~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~----~~~~~~l~~F~~~g~~~~l~~lvd~~ 491 (573)
...+..+. ..-.+-.||||.|++.|+.++-.|...|+++.+.|. ++|..+-+.| -+++..+|++++
T Consensus 238 ~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~W-M~~~~PvI~AT~--- 313 (641)
T KOG0352|consen 238 SSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKW-MNNEIPVIAATV--- 313 (641)
T ss_pred HHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHH-hcCCCCEEEEEe---
Confidence 55444221 122357899999999999999999999999987544 4788899999 899999988833
Q ss_pred ccC-CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHH
Q 008235 492 HIS-TAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIE 549 (573)
Q Consensus 492 s~r-GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~ 549 (573)
|.. |+|-|+|++|||+++|.++.-|.|.+||+||+|....|-++|+.+|...++.|++
T Consensus 314 SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 314 SFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred ccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 234 9999999999999999999999999999999999999999999999888776654
No 75
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.98 E-value=1.4e-30 Score=279.96 Aligned_cols=328 Identities=12% Similarity=0.035 Sum_probs=225.8
Q ss_pred CCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHH
Q 008235 194 GVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (573)
Q Consensus 194 g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~ 273 (573)
.+.-|+.+.+.++|.+....+| |+|+|+++||| +|||++.+.-++.++...+ ..++||++||+-|+.|..
T Consensus 54 ~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG-~GKTfIAa~Vm~nh~rw~p--------~~KiVF~aP~~pLv~QQ~ 123 (746)
T KOG0354|consen 54 RWIYPTNLELRNYQEELVQPAL-GKNTIIALPTG-SGKTFIAAVIMKNHFEWRP--------KGKVVFLAPTRPLVNQQI 123 (746)
T ss_pred cccccCcccccHHHHHHhHHhh-cCCeEEEeecC-CCccchHHHHHHHHHhcCC--------cceEEEeeCCchHHHHHH
Confidence 3444556667999999999999 99999999999 9999999999999987764 568999999999999988
Q ss_pred HHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCC-CCCccEEEEeCcccccC---cchHH
Q 008235 274 SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID-VSGVSLLVVDRLDSLSK---GDTLS 349 (573)
Q Consensus 274 ~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~-l~~l~~lViDEad~ll~---~~~l~ 349 (573)
..+..+.. +-.+....||.....-...+-. ..+|+|+||..|...|.++... |+.+.++||||||+-.. +..+.
T Consensus 124 a~~~~~~~-~~~~T~~l~~~~~~~~r~~i~~-s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vm 201 (746)
T KOG0354|consen 124 ACFSIYLI-PYSVTGQLGDTVPRSNRGEIVA-SKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIM 201 (746)
T ss_pred HHHhhccC-cccceeeccCccCCCchhhhhc-ccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHH
Confidence 66665532 2444455566333322233444 5899999999999888876543 69999999999999988 33333
Q ss_pred -HHHHhcCCCCcEEEEeccCCccHHHHHH---HHhcC----------------------Cc-------------------
Q 008235 350 -LIRQSISGKPHTVVFNDCLTYTSVPAVQ---NLLLG----------------------SI------------------- 384 (573)
Q Consensus 350 -~Il~~l~~~~q~l~~SAT~~~~~~~~~~---~~l~~----------------------~~------------------- 384 (573)
..+..-....|++++|||+......... .+... |+
T Consensus 202 r~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p 281 (746)
T KOG0354|consen 202 REYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEP 281 (746)
T ss_pred HHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHH
Confidence 3333334455999999998755332211 11100 00
Q ss_pred --------eEEEcCCC-----------ccccc--------------------------cceE--EEE-------------
Q 008235 385 --------NRLSLNQS-----------VASQS--------------------------ACII--QSV------------- 404 (573)
Q Consensus 385 --------~~i~~~~~-----------~~~~~--------------------------~~i~--~~~------------- 404 (573)
..+.+... ..+.. ..|+ ..+
T Consensus 282 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~ 361 (746)
T KOG0354|consen 282 LLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALK 361 (746)
T ss_pred HHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchh
Confidence 00000000 00000 0000 000
Q ss_pred --------------------------EEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHH---
Q 008235 405 --------------------------NVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC--- 455 (573)
Q Consensus 405 --------------------------~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~--- 455 (573)
..-+.+..|+..|.++|...+.... ..++||||.++..|..|..+|..
T Consensus 362 k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~---dsR~IIFve~R~sa~~l~~~l~~~~~ 438 (746)
T KOG0354|consen 362 KYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNP---DSRTIIFVETRESALALKKWLLQLHE 438 (746)
T ss_pred HHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCC---CccEEEEEehHHHHHHHHHHHHhhhh
Confidence 0000124566677777777666544 89999999999999999999883
Q ss_pred CCCCeeeecCC------------CHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhcc
Q 008235 456 KGYSISTGSNC------------IVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSM 523 (573)
Q Consensus 456 ~g~~~~~~~~~------------~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~ 523 (573)
.|+.+..++.. ...++++.| ++|..++|++ |.++. .||||++|++||.||.-.++...|||.||
T Consensus 439 ~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~F-r~G~~NvLVA-TSV~E-EGLDI~ec~lVIcYd~~snpIrmIQrrGR- 514 (746)
T KOG0354|consen 439 LGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKF-RDGEINVLVA-TSVAE-EGLDIGECNLVICYDYSSNPIRMVQRRGR- 514 (746)
T ss_pred cccccceeeeccccccccccCHHHHHHHHHHH-hCCCccEEEE-ecchh-ccCCcccccEEEEecCCccHHHHHHHhcc-
Confidence 23444333221 123489999 9999999887 44654 59999999999999999999999999999
Q ss_pred ccCCCcceEEEEeccccH
Q 008235 524 ARHTVSGILHSFFTKDDA 541 (573)
Q Consensus 524 gR~g~~G~~i~~~~~~d~ 541 (573)
||+ +.|.++++++..+.
T Consensus 515 gRa-~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 515 GRA-RNSKCVLLTTGSEV 531 (746)
T ss_pred ccc-cCCeEEEEEcchhH
Confidence 996 57888888885443
No 76
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.98 E-value=1.6e-30 Score=297.84 Aligned_cols=297 Identities=9% Similarity=0.105 Sum_probs=200.0
Q ss_pred HHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCc--EEEEEcc----cHHHHHHHHHHHhh-
Q 008235 206 WGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGP--FLLFLVS----SQEKAAKVRSVCKP- 278 (573)
Q Consensus 206 iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~--~~Lil~P----treLa~Qi~~~~~~- 278 (573)
.-.+.+..+..+..++++++|| ||||. .+|.+..... .+. .+++.-| +++||.||.+.+..
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTG-SGKTT--qlPq~lle~g---------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~ 145 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETG-SGKTT--QLPKICLELG---------RGVKGLIGHTQPRRLAARTVANRIAEELETE 145 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCC-CCHHH--HHHHHHHHcC---------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhh
Confidence 3334445555556677889999 99998 5885533221 122 2333345 67899999988875
Q ss_pred hhcC-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcc-cccCcchHHH-HHHhc
Q 008235 279 LKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD-SLSKGDTLSL-IRQSI 355 (573)
Q Consensus 279 l~~~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad-~ll~~~~l~~-Il~~l 355 (573)
++.. |..+ ....+ ... +++|+|+|||+|++++.... .|+++++||||||| ++++.+.+.. +...+
T Consensus 146 lG~~VGY~v-------rf~~~---~s~-~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL 213 (1294)
T PRK11131 146 LGGCVGYKV-------RFNDQ---VSD-NTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELL 213 (1294)
T ss_pred hcceeceee-------cCccc---cCC-CCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhh
Confidence 4221 2221 11122 123 68999999999999998754 49999999999999 6777222222 22223
Q ss_pred C--CCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCCh-----hHHHHHHHHHHHHHhccC
Q 008235 356 S--GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASD-----EEKILKGIQVLDHAYGDH 428 (573)
Q Consensus 356 ~--~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~-----~~k~~~l~~~L~~~~~~~ 428 (573)
+ ++.|+++||||++. ..+++.|...|+ +.+.... ..+++.|..+... .+.+..+...+..+...
T Consensus 214 ~~rpdlKvILmSATid~--e~fs~~F~~apv--I~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~- 284 (1294)
T PRK11131 214 PRRPDLKVIITSATIDP--ERFSRHFNNAPI--IEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRE- 284 (1294)
T ss_pred hcCCCceEEEeeCCCCH--HHHHHHcCCCCE--EEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcC-
Confidence 2 57899999999974 567766666664 5554321 2356666655321 22333444444443322
Q ss_pred CCCCCCcEEEEecChhhHHHHHHHHHHCCCC---eeeecCCCHHH--HHHHHHhcCCCCCeEEEEeccccCCCccCCCCE
Q 008235 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS---ISTGSNCIVSH--IKNSVEADGRKRPAVSMIDKDHISTAELEEYEV 503 (573)
Q Consensus 429 ~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~---~~~~~~~~~~~--~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~ 503 (573)
. .+.+||||++..+++.+++.|...++. +.. +||++++ ..+-|...|..+++++ ||++. +|||||+|++
T Consensus 285 ~---~GdILVFLpg~~EIe~lae~L~~~~~~~~~Vlp-Lhg~Ls~~eQ~~Vf~~~g~rkIIVA-TNIAE-tSITIpgI~y 358 (1294)
T PRK11131 285 G---PGDILIFMSGEREIRDTADALNKLNLRHTEILP-LYARLSNSEQNRVFQSHSGRRIVLA-TNVAE-TSLTVPGIKY 358 (1294)
T ss_pred C---CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEee-cccCCCHHHHHHHhcccCCeeEEEe-ccHHh-hccccCcceE
Confidence 2 578999999999999999999998876 333 5776543 4455644566677666 68984 9999999999
Q ss_pred EEeCC---------------CC---CCHHHHHHHHhccccCCCcceEEEEeccccHH
Q 008235 504 VIVPD---------------FI---ISMKNYVEILTSMARHTVSGILHSFFTKDDAA 542 (573)
Q Consensus 504 VI~~d---------------~P---~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~ 542 (573)
||+++ +| .|..+|+||+|||||. ..|.||.|+++.+..
T Consensus 359 VID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 359 VIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred EEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 99986 34 4568999999999998 799999999987643
No 77
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=6.5e-29 Score=277.29 Aligned_cols=305 Identities=12% Similarity=0.082 Sum_probs=212.8
Q ss_pred CCCCCHHHHHHHHHHhcC---CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHH
Q 008235 200 PLFVNSWGIEFWKCYSSA---KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (573)
Q Consensus 200 ~~~~t~iQ~~aip~il~g---~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~ 276 (573)
+..+|+.|.+++..+..+ +++++.++|| ||||.+|+.++...+. .|.++|||+||++|+.|+.+.+
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TG-SGKT~v~l~~i~~~l~----------~g~~vLvLvPt~~L~~Q~~~~l 210 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTG-SGKTEVYLQAIAEVLA----------QGKQALVLVPEIALTPQMLARF 210 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCC-ChHHHHHHHHHHHHHH----------cCCeEEEEeCcHHHHHHHHHHH
Confidence 345799999999999984 8899999999 9999999887776654 2568999999999999999988
Q ss_pred hhhhcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC------cch
Q 008235 277 KPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK------GDT 347 (573)
Q Consensus 277 ~~l~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~------~~~ 347 (573)
+.. +++.++.++||.+..+. +..+..+.++|+||||+.+. ..++++.+|||||+|.... ...
T Consensus 211 ~~~--fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~ 281 (679)
T PRK05580 211 RAR--FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYH 281 (679)
T ss_pred HHH--hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCc
Confidence 763 37889999999876543 34455557899999998873 4578999999999997654 112
Q ss_pred HHHH--HHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCcc-ccccceEEEEEEcCChhH------HHHHHH
Q 008235 348 LSLI--RQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA-SQSACIIQSVNVCASDEE------KILKGI 418 (573)
Q Consensus 348 l~~I--l~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~~------k~~~l~ 418 (573)
.+.+ +.....+.|++++|||.+......+. ......+.+..... ...+.+ .++....... -...++
T Consensus 282 ~r~va~~ra~~~~~~~il~SATps~~s~~~~~---~g~~~~~~l~~r~~~~~~p~v--~~id~~~~~~~~~~~~ls~~l~ 356 (679)
T PRK05580 282 ARDLAVVRAKLENIPVVLGSATPSLESLANAQ---QGRYRLLRLTKRAGGARLPEV--EIIDMRELLRGENGSFLSPPLL 356 (679)
T ss_pred HHHHHHHHhhccCCCEEEEcCCCCHHHHHHHh---ccceeEEEeccccccCCCCeE--EEEechhhhhhcccCCCCHHHH
Confidence 2332 23335788999999997644332221 22223444433211 111111 1111110000 013355
Q ss_pred HHHHHHhccCCCCCCCcEEEEecCh-------------------------------------------------------
Q 008235 419 QVLDHAYGDHFHSEPLKVLYIVGKD------------------------------------------------------- 443 (573)
Q Consensus 419 ~~L~~~~~~~~~~~~~k~lIF~~s~------------------------------------------------------- 443 (573)
+.+.+.+.. +.++|||+|++
T Consensus 357 ~~i~~~l~~-----g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 357 EAIKQRLER-----GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTD 431 (679)
T ss_pred HHHHHHHHc-----CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCe
Confidence 566665554 45899998852
Q ss_pred -----hhHHHHHHHHHHC--CCCeeeecCCC-------HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEE--eC
Q 008235 444 -----SKFQNLVSTLKCK--GYSISTGSNCI-------VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVI--VP 507 (573)
Q Consensus 444 -----~~~~~l~~~L~~~--g~~~~~~~~~~-------~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI--~~ 507 (573)
..++.+++.|... +.++..+ |++ ++++++.| ++|+..++++ |++. ++|+|+|+|++|+ ++
T Consensus 432 l~~~g~G~e~~~e~l~~~fp~~~v~~~-~~d~~~~~~~~~~~l~~f-~~g~~~ILVg-T~~i-akG~d~p~v~lV~il~a 507 (679)
T PRK05580 432 LVPVGPGTERLEEELAELFPEARILRI-DRDTTRRKGALEQLLAQF-ARGEADILIG-TQML-AKGHDFPNVTLVGVLDA 507 (679)
T ss_pred eEEeeccHHHHHHHHHHhCCCCcEEEE-eccccccchhHHHHHHHH-hcCCCCEEEE-Chhh-ccCCCCCCcCEEEEEcC
Confidence 1456777788775 6666654 554 45689999 9999999888 6677 5899999999995 44
Q ss_pred CCCC----------CHHHHHHHHhccccCCCcceEEEEecc
Q 008235 508 DFII----------SMKNYVEILTSMARHTVSGILHSFFTK 538 (573)
Q Consensus 508 d~P~----------s~~~YiqR~GR~gR~g~~G~~i~~~~~ 538 (573)
|.+- ....|+|++||+||++..|.+++....
T Consensus 508 D~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~ 548 (679)
T PRK05580 508 DLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYH 548 (679)
T ss_pred chhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCC
Confidence 5443 346799999999999999999976543
No 78
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=8.3e-29 Score=268.72 Aligned_cols=326 Identities=15% Similarity=0.144 Sum_probs=234.3
Q ss_pred CHHHHHHHHHHhcC-CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHh-hhhc
Q 008235 204 NSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK-PLKA 281 (573)
Q Consensus 204 t~iQ~~aip~il~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~-~l~~ 281 (573)
+.+|+.++|.+... .|+|+||||| ||||..|+|.+|..+...........++.+++||+|+++||..+.+.+. +|..
T Consensus 112 N~iQS~vFp~aY~SneNMLIcAPTG-sGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~ 190 (1230)
T KOG0952|consen 112 NRIQSEVFPVAYKSNENMLICAPTG-SGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAP 190 (1230)
T ss_pred HHHHHHhhhhhhcCCCCEEEECCCC-CCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccc
Confidence 78999999999875 8999999999 9999999999999888643333334468899999999999999987664 4888
Q ss_pred CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC----CCCCCccEEEEeCcccccC--cchHHHHHHhc
Q 008235 282 FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA----IDVSGVSLLVVDRLDSLSK--GDTLSLIRQSI 355 (573)
Q Consensus 282 ~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~----~~l~~l~~lViDEad~ll~--~~~l~~Il~~l 355 (573)
+|++|.-++|.+...... +. .++|||+||+.+ |.+.++. ..++.+++|||||+|.|.+ ++.++.|+.+.
T Consensus 191 ~gi~v~ELTGD~ql~~te--i~--~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRt 265 (1230)
T KOG0952|consen 191 LGISVRELTGDTQLTKTE--IA--DTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVART 265 (1230)
T ss_pred ccceEEEecCcchhhHHH--HH--hcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHH
Confidence 999999999998766543 43 489999999986 5555433 2357899999999998888 88888887765
Q ss_pred -------CCCCcEEEEeccCCccHHHHHHHHhcCC-ceEEEcCCCccccccceEEEEEEcCChh--H----HHHHHHHHH
Q 008235 356 -------SGKPHTVVFNDCLTYTSVPAVQNLLLGS-INRLSLNQSVASQSACIIQSVNVCASDE--E----KILKGIQVL 421 (573)
Q Consensus 356 -------~~~~q~l~~SAT~~~~~~~~~~~~l~~~-~~~i~~~~~~~~~~~~i~~~~~~~~~~~--~----k~~~l~~~L 421 (573)
....+++++|||+|+ ..+++..+-.+| ...+.++.. ..+-.+++.++-+.... . -....++-+
T Consensus 266 lr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~--yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv 342 (1230)
T KOG0952|consen 266 LRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQR--YRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKV 342 (1230)
T ss_pred HHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeeccc--ccccceeeeEEeeecccchhhhhhHHHHHHHHH
Confidence 256789999999998 777776655554 223444432 23335777777664321 1 111222333
Q ss_pred HHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCC----CCe------------------eeecCC-----CHHHHHHH
Q 008235 422 DHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKG----YSI------------------STGSNC-----IVSHIKNS 474 (573)
Q Consensus 422 ~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g----~~~------------------~~~~~~-----~~~~~l~~ 474 (573)
..++.. +.+++|||.++..+.+.+..|...+ ... ..+||+ +|.-+.+.
T Consensus 343 ~e~~~~-----g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 343 VEFLQE-----GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHc-----CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 334433 5699999999999988888886532 111 123443 44457888
Q ss_pred HHhcCCCCCeEEEEeccccC-CCccCCCCEEE----eCCCCC------CHHHHHHHHhccccCC--CcceEEEEeccccH
Q 008235 475 VEADGRKRPAVSMIDKDHIS-TAELEEYEVVI----VPDFII------SMKNYVEILTSMARHT--VSGILHSFFTKDDA 541 (573)
Q Consensus 475 F~~~g~~~~l~~lvd~~s~r-GlDip~v~~VI----~~d~P~------s~~~YiqR~GR~gR~g--~~G~~i~~~~~~d~ 541 (573)
| ..|-.+++++ + .| ++ |+++|+--++| .||.-. .+-+-+|..||+||.+ ..|.++.+.+.+-+
T Consensus 418 F-~~G~i~vL~c-T-aT-LAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl 493 (1230)
T KOG0952|consen 418 F-KEGHIKVLCC-T-AT-LAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKL 493 (1230)
T ss_pred H-hcCCceEEEe-c-ce-eeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHH
Confidence 9 9999999888 3 33 45 99999765555 244433 4678899999999986 57999877766545
Q ss_pred HHHHHH
Q 008235 542 AHAGQM 547 (573)
Q Consensus 542 ~~~~~l 547 (573)
..+..|
T Consensus 494 ~~Y~sL 499 (1230)
T KOG0952|consen 494 DHYESL 499 (1230)
T ss_pred HHHHHH
Confidence 444433
No 79
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=5.2e-29 Score=239.56 Aligned_cols=187 Identities=21% Similarity=0.321 Sum_probs=166.2
Q ss_pred HHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEccc
Q 008235 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265 (573)
Q Consensus 186 i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 265 (573)
+.+.+.+.|+..| +++|.++|+.+++|+|++++|||| +|||++|++|++.++..... ..++++||++||
T Consensus 10 i~~~l~~~~~~~~-----~~~Q~~~~~~~~~~~~~li~~~TG-~GKT~~~~~~~l~~~~~~~~-----~~~~~viii~p~ 78 (203)
T cd00268 10 LLRGIYALGFEKP-----TPIQARAIPPLLSGRDVIGQAQTG-SGKTAAFLIPILEKLDPSPK-----KDGPQALILAPT 78 (203)
T ss_pred HHHHHHHcCCCCC-----CHHHHHHHHHHhcCCcEEEECCCC-CcHHHHHHHHHHHHHHhhcc-----cCCceEEEEcCC
Confidence 4555666799998 999999999999999999999999 99999999999999887531 147899999999
Q ss_pred HHHHHHHHHHHhhhhc-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC
Q 008235 266 QEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (573)
Q Consensus 266 reLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~ 344 (573)
++|+.|+...+..+.. .++.+..++|+.........+.. +++|+|+||++|.+++.++...+.+++++|+||||.+.+
T Consensus 79 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 79 RELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKR-GPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcC-CCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 9999999999999844 58999999999988777666664 799999999999999998888899999999999999887
Q ss_pred ---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCc
Q 008235 345 ---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSI 384 (573)
Q Consensus 345 ---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~ 384 (573)
...+..++..++..+|++++|||+++.+..++..++.+|+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~ 200 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPV 200 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCE
Confidence 6677888888888999999999999999999999999886
No 80
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1e-27 Score=263.88 Aligned_cols=137 Identities=10% Similarity=0.152 Sum_probs=120.1
Q ss_pred hCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHH
Q 008235 192 HDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAK 271 (573)
Q Consensus 192 ~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Q 271 (573)
..||..| +.+||+|.+++|.++.++|+++.|+|| +|||+||++|++..++.. ..++||+||++||.|
T Consensus 84 ~~G~~~p--~~~tp~qvQ~I~~i~l~~gvIAeaqTG-eGKTLAf~LP~l~~aL~g----------~~v~IVTpTrELA~Q 150 (970)
T PRK12899 84 VSGYHQQ--WDMVPYDVQILGAIAMHKGFITEMQTG-EGKTLTAVMPLYLNALTG----------KPVHLVTVNDYLAQR 150 (970)
T ss_pred cccccCC--CCCChHHHHHhhhhhcCCCeEEEeCCC-CChHHHHHHHHHHHHhhc----------CCeEEEeCCHHHHHH
Confidence 4577776 667999999999999999999999999 999999999999877632 248999999999999
Q ss_pred HHHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcCCCCCC-------CccEEEEeCcccc
Q 008235 272 VRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLKAIDVS-------GVSLLVVDRLDSL 342 (573)
Q Consensus 272 i~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~~~~l~-------~l~~lViDEad~l 342 (573)
+.+++..+. .+|+++.+++||.+...+...+ +|||+|||||+| +|+|+.+.+.++ .+.++||||||.|
T Consensus 151 dae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y---~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsm 227 (970)
T PRK12899 151 DCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY---QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSI 227 (970)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc---CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhh
Confidence 999999984 4699999999999998886554 589999999999 999998866665 5689999999998
Q ss_pred cC
Q 008235 343 SK 344 (573)
Q Consensus 343 l~ 344 (573)
+-
T Consensus 228 Li 229 (970)
T PRK12899 228 LI 229 (970)
T ss_pred hh
Confidence 75
No 81
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=1e-27 Score=262.85 Aligned_cols=317 Identities=11% Similarity=0.031 Sum_probs=209.2
Q ss_pred CCCCHHHHHHHHHHhc-C--CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHh
Q 008235 201 LFVNSWGIEFWKCYSS-A--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~-g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~ 277 (573)
+.+.|+|.+|+..++. | +.-++++||| +|||+..+. ++..+ ...+|||||+.+|+.|+.+.+.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtG-aGKTlvai~-aa~~l------------~k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCG-AGKSLVGVT-AACTV------------KKSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCC-CChHHHHHH-HHHHh------------CCCEEEEeCcHHHHHHHHHHHH
Confidence 4469999999998874 4 4689999999 999998654 33332 2258999999999999999999
Q ss_pred hhhcC-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHc--------CCCCCCCccEEEEeCcccccCcchH
Q 008235 278 PLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL--------KAIDVSGVSLLVVDRLDSLSKGDTL 348 (573)
Q Consensus 278 ~l~~~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~--------~~~~l~~l~~lViDEad~ll~~~~l 348 (573)
.+... ...+..++|+.... ... ...|+|+|...+.....+ ..+.-....+||+||||++. ...+
T Consensus 320 ~~~~l~~~~I~~~tg~~k~~-----~~~-~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp-A~~f 392 (732)
T TIGR00603 320 MWSTIDDSQICRFTSDAKER-----FHG-EAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP-AAMF 392 (732)
T ss_pred HhcCCCCceEEEEecCcccc-----ccc-CCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc-HHHH
Confidence 98543 44555666643211 111 368999998866422111 11223467899999999986 5667
Q ss_pred HHHHHhcCCCCcEEEEeccCCccHH--HHHHHHhcCCceEEEcCCCcc---ccccceEEEEEEcC---------------
Q 008235 349 SLIRQSISGKPHTVVFNDCLTYTSV--PAVQNLLLGSINRLSLNQSVA---SQSACIIQSVNVCA--------------- 408 (573)
Q Consensus 349 ~~Il~~l~~~~q~l~~SAT~~~~~~--~~~~~~l~~~~~~i~~~~~~~---~~~~~i~~~~~~~~--------------- 408 (573)
..++..+. ....+++|||+...-. ..+..+++ |. .+...-.+. .-...+...-+.|+
T Consensus 393 r~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~-vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~ 469 (732)
T TIGR00603 393 RRVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIG-PK-LYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSR 469 (732)
T ss_pred HHHHHhcC-cCcEEEEeecCcccCCchhhhhhhcC-Ce-eeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcch
Confidence 77777764 3457999999864311 11222222 32 222211000 00011111111121
Q ss_pred -------ChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCC-----CHHHHHHHHH
Q 008235 409 -------SDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC-----IVSHIKNSVE 476 (573)
Q Consensus 409 -------~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~-----~~~~~l~~F~ 476 (573)
....|+..+..++...- .. +.++||||++...++.++..| +... +|| +|.++++.|
T Consensus 470 ~k~~l~~~np~K~~~~~~Li~~he--~~---g~kiLVF~~~~~~l~~~a~~L---~~~~---I~G~ts~~ER~~il~~F- 537 (732)
T TIGR00603 470 KRMLLYVMNPNKFRACQFLIRFHE--QR---GDKIIVFSDNVFALKEYAIKL---GKPF---IYGPTSQQERMQILQNF- 537 (732)
T ss_pred hhhHHhhhChHHHHHHHHHHHHHh--hc---CCeEEEEeCCHHHHHHHHHHc---CCce---EECCCCHHHHHHHHHHH-
Confidence 11234444444554332 12 579999999999999998887 3333 344 467799999
Q ss_pred hcC-CCCCeEEEEeccccCCCccCCCCEEEeCCCC-CCHHHHHHHHhccccCCCcceE-------EEEeccc--cHHHHH
Q 008235 477 ADG-RKRPAVSMIDKDHISTAELEEYEVVIVPDFI-ISMKNYVEILTSMARHTVSGIL-------HSFFTKD--DAAHAG 545 (573)
Q Consensus 477 ~~g-~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P-~s~~~YiqR~GR~gR~g~~G~~-------i~~~~~~--d~~~~~ 545 (573)
+++ ...+|++ +++.+ +|||+|++++||+++.| .|...|+||+||++|.+..|.+ ++|++++ |..+..
T Consensus 538 r~~~~i~vLv~-SkVgd-eGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 538 QHNPKVNTIFL-SKVGD-TSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred HhCCCccEEEE-ecccc-cccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHH
Confidence 654 6666655 57885 89999999999999998 5999999999999999877775 8888875 566666
Q ss_pred HHHHHHHHcC
Q 008235 546 QMIEILEQCG 555 (573)
Q Consensus 546 ~l~~~l~~~~ 555 (573)
+-.++|-..|
T Consensus 616 ~Rq~fl~~qG 625 (732)
T TIGR00603 616 KRQRFLVDQG 625 (732)
T ss_pred HHHHHHHHCC
Confidence 6667776543
No 82
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=233.63 Aligned_cols=315 Identities=12% Similarity=0.133 Sum_probs=233.0
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG 283 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~ 283 (573)
.|.|..+|...+.|.|++++.||| .||+|+|.||+|. ....+||+||...|.. +++..|..+|
T Consensus 96 rplq~~ain~~ma~ed~~lil~tg-ggkslcyqlpal~-------------adg~alvi~plislme---dqil~lkqlg 158 (695)
T KOG0353|consen 96 RPLQLAAINATMAGEDAFLILPTG-GGKSLCYQLPALC-------------ADGFALVICPLISLME---DQILQLKQLG 158 (695)
T ss_pred ChhHHHHhhhhhccCceEEEEeCC-CccchhhhhhHHh-------------cCCceEeechhHHHHH---HHHHHHHHhC
Confidence 679999999999999999999999 9999999999984 3457999999777755 4555555559
Q ss_pred cEEEEeCCCCCHHHHHH---Hhh--cCCCcEEEeCHHHHHH---HHHc--CCCCCCCccEEEEeCcccccC-----cc--
Q 008235 284 IHTVSLHPGAAIDHQIT---GLR--SCEPEFLVSTPERLLK---LVSL--KAIDVSGVSLLVVDRLDSLSK-----GD-- 346 (573)
Q Consensus 284 i~~~~~~gg~~~~~~~~---~l~--~~~~~IlV~TP~rL~~---~l~~--~~~~l~~l~~lViDEad~ll~-----~~-- 346 (573)
|....+....+..+..+ .+. .....+|+.||+.+.. ++.. +.+....+.++.|||+|+-.. ++
T Consensus 159 i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy 238 (695)
T KOG0353|consen 159 IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDY 238 (695)
T ss_pred cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcch
Confidence 98888877766543321 111 1257899999998853 2222 445667789999999999876 22
Q ss_pred hHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCCh-hHHHHHHHHHHHHHh
Q 008235 347 TLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASD-EEKILKGIQVLDHAY 425 (573)
Q Consensus 347 ~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~-~~k~~~l~~~L~~~~ 425 (573)
....|+..--++..++.++||.+..+.+-++.++.-.. .+.+... ...+++...+..-+.. ++-.+-+..+++.
T Consensus 239 ~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~-~~tf~a~--fnr~nl~yev~qkp~n~dd~~edi~k~i~~-- 313 (695)
T KOG0353|consen 239 KALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEA-AFTFRAG--FNRPNLKYEVRQKPGNEDDCIEDIAKLIKG-- 313 (695)
T ss_pred HHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHh-hheeecc--cCCCCceeEeeeCCCChHHHHHHHHHHhcc--
Confidence 22334444446788999999999998888888776432 2222222 3334566555555432 2223333333332
Q ss_pred ccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccC-CCccC
Q 008235 426 GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHIS-TAELE 499 (573)
Q Consensus 426 ~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~r-GlDip 499 (573)
.-. +...||||-|++.|+.++..|+..|+.+.. .|.. ++-+-+.| -.|+..+++++| + .. |||-|
T Consensus 314 -~f~---gqsgiiyc~sq~d~ekva~alkn~gi~a~~-yha~lep~dks~~hq~w-~a~eiqvivatv--a-fgmgidkp 384 (695)
T KOG0353|consen 314 -DFA---GQSGIIYCFSQKDCEKVAKALKNHGIHAGA-YHANLEPEDKSGAHQGW-IAGEIQVIVATV--A-FGMGIDKP 384 (695)
T ss_pred -ccC---CCcceEEEeccccHHHHHHHHHhcCccccc-cccccCccccccccccc-cccceEEEEEEe--e-ecccCCCC
Confidence 222 567899999999999999999999999875 4654 44477888 888888888744 3 23 99999
Q ss_pred CCCEEEeCCCCCCHHHHHH-------------------------------------------HHhccccCCCcceEEEEe
Q 008235 500 EYEVVIVPDFIISMKNYVE-------------------------------------------ILTSMARHTVSGILHSFF 536 (573)
Q Consensus 500 ~v~~VI~~d~P~s~~~Yiq-------------------------------------------R~GR~gR~g~~G~~i~~~ 536 (573)
+|++|||..+|.|++.|.| ..||+||.+.+..||++|
T Consensus 385 dvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy 464 (695)
T KOG0353|consen 385 DVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYY 464 (695)
T ss_pred CeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEe
Confidence 9999999999999999999 789999999999999999
Q ss_pred ccccHHHHHHHHH
Q 008235 537 TKDDAAHAGQMIE 549 (573)
Q Consensus 537 ~~~d~~~~~~l~~ 549 (573)
.-.|......|+.
T Consensus 465 ~~~difk~ssmv~ 477 (695)
T KOG0353|consen 465 GFADIFKISSMVQ 477 (695)
T ss_pred chHHHHhHHHHHH
Confidence 9888777776664
No 83
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=1.3e-27 Score=275.01 Aligned_cols=298 Identities=9% Similarity=0.066 Sum_probs=198.5
Q ss_pred HHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEe
Q 008235 210 FWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSL 289 (573)
Q Consensus 210 aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~ 289 (573)
.+..+..+..+|++++|| ||||. .+|.+..-... . ....+++.-|.|--|..+...+... +|..++..
T Consensus 75 Il~~l~~~~vvii~g~TG-SGKTT--qlPq~lle~~~--~-----~~~~I~~tQPRRlAA~svA~RvA~e--lg~~lG~~ 142 (1283)
T TIGR01967 75 IAEAIAENQVVIIAGETG-SGKTT--QLPKICLELGR--G-----SHGLIGHTQPRRLAARTVAQRIAEE--LGTPLGEK 142 (1283)
T ss_pred HHHHHHhCceEEEeCCCC-CCcHH--HHHHHHHHcCC--C-----CCceEecCCccHHHHHHHHHHHHHH--hCCCcceE
Confidence 344444456678889999 99998 46766432211 0 1224555668777666666444332 13333333
Q ss_pred CCC-CCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcc-cccC----cchHHHHHHhcCCCCcEEE
Q 008235 290 HPG-AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD-SLSK----GDTLSLIRQSISGKPHTVV 363 (573)
Q Consensus 290 ~gg-~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad-~ll~----~~~l~~Il~~l~~~~q~l~ 363 (573)
+|. ...+.+. .. ...|+|+|||+|++.+.... .|+++++||||||| ++++ ...+..++.. .++.|+++
T Consensus 143 VGY~vR~~~~~---s~-~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIl 216 (1283)
T TIGR01967 143 VGYKVRFHDQV---SS-NTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIII 216 (1283)
T ss_pred EeeEEcCCccc---CC-CceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEE
Confidence 332 1222221 22 57899999999999987754 48999999999999 6887 2334555443 35789999
Q ss_pred EeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCC-----hhHHHHHHHHHHHHHhccCCCCCCCcEEE
Q 008235 364 FNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCAS-----DEEKILKGIQVLDHAYGDHFHSEPLKVLY 438 (573)
Q Consensus 364 ~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-----~~~k~~~l~~~L~~~~~~~~~~~~~k~lI 438 (573)
||||++ ...+++.|...|+ +.+.... ..+...|..+.. ..++...+...+..++... .+.+||
T Consensus 217 mSATld--~~~fa~~F~~apv--I~V~Gr~----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~----~GdILV 284 (1283)
T TIGR01967 217 TSATID--PERFSRHFNNAPI--IEVSGRT----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEG----PGDILI 284 (1283)
T ss_pred EeCCcC--HHHHHHHhcCCCE--EEECCCc----ccceeEEecccccccchhhhHHHHHHHHHHHHHhhC----CCCEEE
Confidence 999997 4567766666664 4444321 124445544321 1234555666666655432 479999
Q ss_pred EecChhhHHHHHHHHHHCCCC---eeeecCCCHHH--HHHHHHhcC-CCCCeEEEEeccccCCCccCCCCEEEeCCCCC-
Q 008235 439 IVGKDSKFQNLVSTLKCKGYS---ISTGSNCIVSH--IKNSVEADG-RKRPAVSMIDKDHISTAELEEYEVVIVPDFII- 511 (573)
Q Consensus 439 F~~s~~~~~~l~~~L~~~g~~---~~~~~~~~~~~--~l~~F~~~g-~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~- 511 (573)
|+++..+++.++..|...++. +.. +||++++ ..+-| +.+ ..+++++ ||++. +|||||+|++||++++++
T Consensus 285 FLpg~~EI~~l~~~L~~~~~~~~~Vlp-Lhg~Ls~~eQ~~vf-~~~~~rkIVLA-TNIAE-tSLTIpgV~yVIDsGl~r~ 360 (1283)
T TIGR01967 285 FLPGEREIRDAAEILRKRNLRHTEILP-LYARLSNKEQQRVF-QPHSGRRIVLA-TNVAE-TSLTVPGIHYVIDTGTARI 360 (1283)
T ss_pred eCCCHHHHHHHHHHHHhcCCCCcEEEe-ccCCCCHHHHHHHh-CCCCCceEEEe-ccHHH-hccccCCeeEEEeCCCccc
Confidence 999999999999999987543 444 5886543 34446 433 3455555 68884 899999999999999543
Q ss_pred -----------------CHHHHHHHHhccccCCCcceEEEEeccccHH
Q 008235 512 -----------------SMKNYVEILTSMARHTVSGILHSFFTKDDAA 542 (573)
Q Consensus 512 -----------------s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~ 542 (573)
|..+|+||+||+||.| .|.||.|++..+..
T Consensus 361 ~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 361 SRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred cccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 5689999999999998 99999999987653
No 84
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.8e-26 Score=253.26 Aligned_cols=307 Identities=11% Similarity=0.069 Sum_probs=212.7
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~ 282 (573)
+++|...--.+..|+ |+.++|| +|||++|.+|++..++. |..++||+||++||.|.++++..+ ..+
T Consensus 84 ydvQliGg~~Lh~G~--Iaem~TG-eGKTL~a~Lpa~~~al~----------G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 84 FDVQLIGGMVLHEGN--IAEMRTG-EGKTLVATLPAYLNAIS----------GRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred chHHHhhhhhhccCc--cccccCC-CCchHHHHHHHHHHHhc----------CCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 888888777777775 8899999 99999999999977652 456999999999999999999998 446
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcC-CCCC-----CCccEEEEeCcccccC-----------
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLK-AIDV-----SGVSLLVVDRLDSLSK----------- 344 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~-~~~l-----~~l~~lViDEad~ll~----------- 344 (573)
|+++.+++||.+...+.... .+||+||||++| .|+|..+ .+.+ +.+.++||||||.|+=
T Consensus 151 GLtv~~i~gg~~~~~r~~~y---~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg 227 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEAY---KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISG 227 (896)
T ss_pred CceEEEEeCCCCHHHHHHHh---CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeC
Confidence 99999999998877654433 589999999999 9999887 3444 6899999999998763
Q ss_pred --------cchHHHHHHhcCC--------------CCcEEEEecc--------------CC--------c------cHHH
Q 008235 345 --------GDTLSLIRQSISG--------------KPHTVVFNDC--------------LT--------Y------TSVP 374 (573)
Q Consensus 345 --------~~~l~~Il~~l~~--------------~~q~l~~SAT--------------~~--------~------~~~~ 374 (573)
+..+..+...+.. ....+.++.. ++ . .+..
T Consensus 228 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~ 307 (896)
T PRK13104 228 AAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNA 307 (896)
T ss_pred CCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHH
Confidence 2222222232211 1122222221 00 0 0000
Q ss_pred HH--HHHhcCCceE------------------------------------------------------------------
Q 008235 375 AV--QNLLLGSINR------------------------------------------------------------------ 386 (573)
Q Consensus 375 ~~--~~~l~~~~~~------------------------------------------------------------------ 386 (573)
.+ ..++...+.+
T Consensus 308 aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTG 387 (896)
T PRK13104 308 ALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTG 387 (896)
T ss_pred HHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCC
Confidence 00 1111111111
Q ss_pred -----------------EEcCCCccccccceEE-EEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHH
Q 008235 387 -----------------LSLNQSVASQSACIIQ-SVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQN 448 (573)
Q Consensus 387 -----------------i~~~~~~~~~~~~i~~-~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~ 448 (573)
+.+.. +.+.....+ -.++. ....|+..+.+.+...... +.|+||||+|+..++.
T Consensus 388 Ta~te~~Ef~~iY~l~Vv~IPt--nkp~~R~d~~d~v~~-t~~~k~~av~~~i~~~~~~-----g~PVLVgt~Sie~sE~ 459 (896)
T PRK13104 388 TADTEAYEFQQIYNLEVVVIPT--NRSMIRKDEADLVYL-TQADKFQAIIEDVRECGVR-----KQPVLVGTVSIEASEF 459 (896)
T ss_pred CChhHHHHHHHHhCCCEEECCC--CCCcceecCCCeEEc-CHHHHHHHHHHHHHHHHhC-----CCCEEEEeCcHHHHHH
Confidence 11111 011111111 12233 3677888888877766554 5699999999999999
Q ss_pred HHHHHHHCCCCeeeecCCCHHH-----HHHHHHhcCCCCCeEEEEeccccCCCccCC-----------------------
Q 008235 449 LVSTLKCKGYSISTGSNCIVSH-----IKNSVEADGRKRPAVSMIDKDHISTAELEE----------------------- 500 (573)
Q Consensus 449 l~~~L~~~g~~~~~~~~~~~~~-----~l~~F~~~g~~~~l~~lvd~~s~rGlDip~----------------------- 500 (573)
|+..|...|+++..+ |+...+ +.+.| +.|. ++++ ||+++ ||+||.=
T Consensus 460 ls~~L~~~gi~h~vL-nak~~q~Ea~iia~Ag-~~G~--VtIA-TNmAG-RGtDI~Lggn~~~~~~~~~~~~~~~~~~~~ 533 (896)
T PRK13104 460 LSQLLKKENIKHQVL-NAKFHEKEAQIIAEAG-RPGA--VTIA-TNMAG-RGTDIVLGGSLAADLANLPADASEQEKEAV 533 (896)
T ss_pred HHHHHHHcCCCeEee-cCCCChHHHHHHHhCC-CCCc--EEEe-ccCcc-CCcceecCCchhhhhhccccchhhHHHHHH
Confidence 999999999999875 665433 56666 5553 4444 68995 9999961
Q ss_pred ----------C-----CEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEecccc
Q 008235 501 ----------Y-----EVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDD 540 (573)
Q Consensus 501 ----------v-----~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d 540 (573)
| =|||--..+.|..-=-|=.||+||-|.+|.+-.|++-+|
T Consensus 534 ~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 534 KKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred HHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1 278888888888888899999999999999999998655
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=1.4e-25 Score=252.49 Aligned_cols=344 Identities=15% Similarity=0.112 Sum_probs=209.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-h
Q 008235 202 FVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280 (573)
Q Consensus 202 ~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~ 280 (573)
.++|+|..+......+.-+|+.|||| +|||.+.++.+. .+.... ...+++|..||++++.|+++.+..+ .
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTG-sGKTEAAL~~A~-~l~~~~-------~~~gi~~aLPT~Atan~m~~Rl~~~~~ 356 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTG-SGKTEAALAYAW-RLIDQG-------LADSIIFALPTQATANAMLSRLEALAS 356 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCC-CCHHHHHHHHHH-HHHHhC-------CCCeEEEECcHHHHHHHHHHHHHHHHH
Confidence 46999998865544456789999999 999999766555 343321 2468999999999999999998764 1
Q ss_pred c-C-CcEEEEeCCCCCHHHHH---------------------HHhh---c--CCCcEEEeCHHHHHHHHH-cCCCCCCCc
Q 008235 281 A-F-GIHTVSLHPGAAIDHQI---------------------TGLR---S--CEPEFLVSTPERLLKLVS-LKAIDVSGV 331 (573)
Q Consensus 281 ~-~-~i~~~~~~gg~~~~~~~---------------------~~l~---~--~~~~IlV~TP~rL~~~l~-~~~~~l~~l 331 (573)
. + ...+..++|........ ..+. + --.+|+|||+..++..+- .+...++.+
T Consensus 357 ~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~ 436 (878)
T PRK09694 357 KLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGF 436 (878)
T ss_pred HhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHH
Confidence 1 2 34567777765432111 1121 1 015899999988874433 233333333
Q ss_pred ----cEEEEeCcccccC--cchHHHHHHhc-CCCCcEEEEeccCCccHHHH-HHHHhcC-Cc------eEEEcCCC----
Q 008235 332 ----SLLVVDRLDSLSK--GDTLSLIRQSI-SGKPHTVVFNDCLTYTSVPA-VQNLLLG-SI------NRLSLNQS---- 392 (573)
Q Consensus 332 ----~~lViDEad~ll~--~~~l~~Il~~l-~~~~q~l~~SAT~~~~~~~~-~~~~l~~-~~------~~i~~~~~---- 392 (573)
++|||||+|.+-. ...+..+++.+ .....++++|||+|...++. ...|-.. +. -.+.....
T Consensus 437 ~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 437 GLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 4899999997632 44555555554 24567999999999876543 3333111 00 00100000
Q ss_pred c--cccc---cceEEEEEE--c--CChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCC---CCe
Q 008235 393 V--ASQS---ACIIQSVNV--C--ASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKG---YSI 460 (573)
Q Consensus 393 ~--~~~~---~~i~~~~~~--~--~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g---~~~ 460 (573)
. .... ....+.+.. . ....... .+++.+...... +.++||||||++.|+.+++.|+..+ ..+
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~-~~l~~i~~~~~~-----g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v 590 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDL-TLLQRMIAAANA-----GAQVCLICNLVDDAQKLYQRLKELNNTQVDI 590 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHH-HHHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHHHhhCCCCceE
Confidence 0 0000 001111111 1 1111112 222333222222 5699999999999999999999765 455
Q ss_pred eeecCCC-----H----HHHHHHHHhcCCC---CCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCC
Q 008235 461 STGSNCI-----V----SHIKNSVEADGRK---RPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTV 528 (573)
Q Consensus 461 ~~~~~~~-----~----~~~l~~F~~~g~~---~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~ 528 (573)
.. +|+. | .++++.|.++++. .++++ |++.. +|||| +++++|....| ++.|+||+||++|.++
T Consensus 591 ~l-lHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVa-TQViE-~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 591 DL-FHARFTLNDRREKEQRVIENFGKNGKRNQGRILVA-TQVVE-QSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EE-EeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEE-Ccchh-heeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 54 5763 3 2468888666653 35544 46664 79999 68999999888 7899999999999986
Q ss_pred c----c----eEEEEeccc------------cHHHHHHHHHHHHHcC---CCCCHHHHHhhh
Q 008235 529 S----G----ILHSFFTKD------------DAAHAGQMIEILEQCG---QVVPDALRDLCH 567 (573)
Q Consensus 529 ~----G----~~i~~~~~~------------d~~~~~~l~~~l~~~~---~~vp~~l~~~~~ 567 (573)
. | .++++ .++ +...+..-..+|...+ ..+|+.++.+.+
T Consensus 665 ~~rp~~~~~p~~~V~-~p~~~~~~~~~~VY~~~~~L~rT~~~L~~~~~~~~~~P~~~~~lve 725 (878)
T PRK09694 665 KYRPAGFEIPVATVL-LPDGEGYGRSGYIYGNTRVLWRTEQLLEEHNAASLFFPDAYREWIE 725 (878)
T ss_pred CCCCCCCcCceEEEE-eccccccCCceeecCchHHHHHHHHHHHhcCCCCcCChHHHHHHHH
Confidence 2 3 23333 221 1223344446667765 578999888764
No 86
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=7.7e-26 Score=249.61 Aligned_cols=306 Identities=11% Similarity=0.024 Sum_probs=221.3
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~ 282 (573)
+++|.-..-.+..|+ |+.+.|| +|||+++.+|++-..+. |..+-|++||++||.|.++.+..+ ..+
T Consensus 83 ~dvQlig~l~L~~G~--Iaem~TG-eGKTLva~lpa~l~aL~----------G~~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 83 FDVQLIGGMVLHEGK--IAEMKTG-EGKTLVATLPAYLNALT----------GKGVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred CccHHHhhHHhcCCc--hhhhhcC-CCcHHHHHHHHHHHHHc----------CCCEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 999999888888886 8899999 99999999999633332 345779999999999999999997 557
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcCC------CCCCCccEEEEeCcccccC-----------
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLKA------IDVSGVSLLVVDRLDSLSK----------- 344 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~~------~~l~~l~~lViDEad~ll~----------- 344 (573)
|+++++++||.+...+.... .+||++|||++| .|+|..+. ..++.+.++||||||.|+=
T Consensus 150 Glsv~~i~~~~~~~er~~~y---~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg 226 (830)
T PRK12904 150 GLSVGVILSGMSPEERREAY---AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISG 226 (830)
T ss_pred CCeEEEEcCCCCHHHHHHhc---CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeEC
Confidence 99999999999887765553 589999999999 99998764 3478899999999998753
Q ss_pred --------cchHHHHHHhcCCC--------CcEE----------------------------------------------
Q 008235 345 --------GDTLSLIRQSISGK--------PHTV---------------------------------------------- 362 (573)
Q Consensus 345 --------~~~l~~Il~~l~~~--------~q~l---------------------------------------------- 362 (573)
+..+..+...+..+ ...+
T Consensus 227 ~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~d 306 (830)
T PRK12904 227 PAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVD 306 (830)
T ss_pred CCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 22233333333211 1111
Q ss_pred ---------------------------------------------------------------EEeccCCccHHHHHHHH
Q 008235 363 ---------------------------------------------------------------VFNDCLTYTSVPAVQNL 379 (573)
Q Consensus 363 ---------------------------------------------------------------~~SAT~~~~~~~~~~~~ 379 (573)
++|.|......++...|
T Consensus 307 YiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 386 (830)
T PRK12904 307 YIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY 386 (830)
T ss_pred EEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh
Confidence 22333322211111111
Q ss_pred hcCCceEEEcCCCccccccceEEE-EEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCC
Q 008235 380 LLGSINRLSLNQSVASQSACIIQS-VNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458 (573)
Q Consensus 380 l~~~~~~i~~~~~~~~~~~~i~~~-~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~ 458 (573)
+-+ ++.+... .+.....+. .++. ...+|+..+.+.+...... +.++||||+|+..++.|+..|...|+
T Consensus 387 -~l~--vv~IPtn--kp~~r~d~~d~i~~-t~~~K~~aI~~~I~~~~~~-----grpVLIft~Si~~se~Ls~~L~~~gi 455 (830)
T PRK12904 387 -NLD--VVVIPTN--RPMIRIDHPDLIYK-TEKEKFDAVVEDIKERHKK-----GQPVLVGTVSIEKSELLSKLLKKAGI 455 (830)
T ss_pred -CCC--EEEcCCC--CCeeeeeCCCeEEE-CHHHHHHHHHHHHHHHHhc-----CCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 111 2222221 111111111 2223 3678898888888765443 46999999999999999999999999
Q ss_pred CeeeecCCC---HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCC----------------------------------
Q 008235 459 SISTGSNCI---VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEY---------------------------------- 501 (573)
Q Consensus 459 ~~~~~~~~~---~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v---------------------------------- 501 (573)
++..+ |++ ++..+..| +.+...++++ ||+++ ||+||+==
T Consensus 456 ~~~vL-nakq~eREa~Iia~-Ag~~g~VtIA-TNmAG-RGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 531 (830)
T PRK12904 456 PHNVL-NAKNHEREAEIIAQ-AGRPGAVTIA-TNMAG-RGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVL 531 (830)
T ss_pred ceEec-cCchHHHHHHHHHh-cCCCceEEEe-ccccc-CCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHH
Confidence 99875 664 34468888 7777788777 79995 99999732
Q ss_pred ----CEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEecccc
Q 008235 502 ----EVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDD 540 (573)
Q Consensus 502 ----~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d 540 (573)
=|||.-..|.|..-=-|=.||+||-|.+|.+-.|++-+|
T Consensus 532 ~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 532 EAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred HcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 278999999999999999999999999999999998665
No 87
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.5e-25 Score=241.86 Aligned_cols=287 Identities=13% Similarity=0.083 Sum_probs=189.6
Q ss_pred EEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHH---
Q 008235 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH--- 297 (573)
Q Consensus 221 l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~--- 297 (573)
|+.+||| ||||++|+..+. .... .|.++|||+|+++|+.|+++.++.. ++..++.++|+.+..+
T Consensus 1 LL~g~TG-sGKT~v~l~~i~-~~l~---------~g~~vLvlvP~i~L~~Q~~~~l~~~--f~~~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTG-SGKTEVYLQAIE-KVLA---------LGKSVLVLVPEIALTPQMIQRFKYR--FGSQVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCC-CCHHHHHHHHHH-HHHH---------cCCeEEEEeCcHHHHHHHHHHHHHH--hCCcEEEEECCCCHHHHHH
Confidence 4678999 999999965543 3332 3668999999999999999988863 3677888899876543
Q ss_pred HHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC----c--chHHH--HHHhcCCCCcEEEEeccCC
Q 008235 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----G--DTLSL--IRQSISGKPHTVVFNDCLT 369 (573)
Q Consensus 298 ~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----~--~~l~~--Il~~l~~~~q~l~~SAT~~ 369 (573)
.+..+..+.++|||||+..+. ..+.++++|||||+|.... . ...+. ++.....+.+++++|||.+
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred HHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 345556657899999998763 3578999999999998764 1 11222 2222346789999999955
Q ss_pred ccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChh---HHHHHHHHHHHHHhccCCCCCCCcEEEEecChhh-
Q 008235 370 YTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDE---EKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSK- 445 (573)
Q Consensus 370 ~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~---~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~- 445 (573)
.+ .+... .......+.+....... ......++-...+. .-...|++.+.+.+.. +.++|||+|++.-
T Consensus 141 le--s~~~~-~~g~~~~~~l~~r~~~~-~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~-----g~qvLvflnrrGya 211 (505)
T TIGR00595 141 LE--SYHNA-KQKAYRLLVLTRRVSGR-KPPEVKLIDMRKEPRQSFLSPELITAIEQTLAA-----GEQSILFLNRRGYS 211 (505)
T ss_pred HH--HHHHH-hcCCeEEeechhhhcCC-CCCeEEEEecccccccCCccHHHHHHHHHHHHc-----CCcEEEEEeCCcCC
Confidence 33 22221 22222233333211111 11111222221111 0112455666666654 4599999776532
Q ss_pred -----------------------------------------------------------HHHHHHHHHHC--CCCeeeec
Q 008235 446 -----------------------------------------------------------FQNLVSTLKCK--GYSISTGS 464 (573)
Q Consensus 446 -----------------------------------------------------------~~~l~~~L~~~--g~~~~~~~ 464 (573)
++++.+.|... +.++..+
T Consensus 212 ~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~- 290 (505)
T TIGR00595 212 KNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARI- 290 (505)
T ss_pred CeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEE-
Confidence 57788888876 5566543
Q ss_pred CCCH-------HHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEE--eCCC----CC------CHHHHHHHHhcccc
Q 008235 465 NCIV-------SHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVI--VPDF----II------SMKNYVEILTSMAR 525 (573)
Q Consensus 465 ~~~~-------~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI--~~d~----P~------s~~~YiqR~GR~gR 525 (573)
|++. +++++.| ++|+..+++. |++. ++|+|+|+|++|+ ++|. |. ....|+|++||+||
T Consensus 291 d~d~~~~~~~~~~~l~~f-~~g~~~ILVg-T~~i-~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR 367 (505)
T TIGR00595 291 DSDTTSRKGAHEALLNQF-ANGKADILIG-TQMI-AKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGR 367 (505)
T ss_pred ecccccCccHHHHHHHHH-hcCCCCEEEe-Cccc-ccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCC
Confidence 5542 5689999 8999999887 5677 5899999999985 6664 42 35789999999999
Q ss_pred CCCcceEEEE-ecccc
Q 008235 526 HTVSGILHSF-FTKDD 540 (573)
Q Consensus 526 ~g~~G~~i~~-~~~~d 540 (573)
++..|.+++. +.|++
T Consensus 368 ~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 368 AEDPGQVIIQTYNPNH 383 (505)
T ss_pred CCCCCEEEEEeCCCCC
Confidence 9999998854 34544
No 88
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=4.1e-26 Score=212.53 Aligned_cols=161 Identities=22% Similarity=0.297 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-C
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-F 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~ 282 (573)
||+|.++|+.+.+|+|+++.|||| +|||++|++|++..+... ...++||++|+++|+.|+.+.+..+.. .
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptG-sGKT~~~~~~~l~~~~~~--------~~~~~lii~P~~~l~~q~~~~~~~~~~~~ 71 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTG-SGKTLAYILPALNRLQEG--------KDARVLIIVPTRALAEQQFERLRKFFSNT 71 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTT-SSHHHHHHHHHHHHHHTT--------SSSEEEEEESSHHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCC-CccHHHHHHHHHhhhccC--------CCceEEEEeeccccccccccccccccccc
Confidence 799999999999999999999999 999999999999888764 234899999999999999999999744 4
Q ss_pred CcEEEEeCCCCCHH-HHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcC--
Q 008235 283 GIHTVSLHPGAAID-HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSIS-- 356 (573)
Q Consensus 283 ~i~~~~~~gg~~~~-~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~-- 356 (573)
++++..++|+.... .+...+.. +++|+|+||++|.+++..+..++.++++|||||+|.+.. ...+..|+..+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~-~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~ 150 (169)
T PF00270_consen 72 NVRVVLLHGGQSISEDQREVLSN-QADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF 150 (169)
T ss_dssp TSSEEEESTTSCHHHHHHHHHHT-TSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT
T ss_pred ccccccccccccccccccccccc-cccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCC
Confidence 78999999999866 44455544 799999999999999998666788899999999999987 456777887773
Q ss_pred CCCcEEEEeccCCccHHH
Q 008235 357 GKPHTVVFNDCLTYTSVP 374 (573)
Q Consensus 357 ~~~q~l~~SAT~~~~~~~ 374 (573)
.+.|++++|||++..++.
T Consensus 151 ~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 151 KNIQIILLSATLPSNVEK 168 (169)
T ss_dssp TTSEEEEEESSSTHHHHH
T ss_pred CCCcEEEEeeCCChhHhh
Confidence 368999999999965554
No 89
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=2e-24 Score=237.52 Aligned_cols=320 Identities=9% Similarity=-0.018 Sum_probs=216.2
Q ss_pred HHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEccc
Q 008235 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265 (573)
Q Consensus 186 i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 265 (573)
++.+.+..--..| +++|.-+--.+..|+ |+...|| +|||++..+|++-..+ .|..+-|++||
T Consensus 69 vrEa~~R~~g~~~-----~dvQlig~l~l~~G~--iaEm~TG-EGKTLvA~l~a~l~al----------~G~~v~vvT~n 130 (796)
T PRK12906 69 AREGAKRVLGLRP-----FDVQIIGGIVLHEGN--IAEMKTG-EGKTLTATLPVYLNAL----------TGKGVHVVTVN 130 (796)
T ss_pred HHHHHHHHhCCCC-----chhHHHHHHHHhcCC--cccccCC-CCCcHHHHHHHHHHHH----------cCCCeEEEecc
Confidence 4444444333445 999999877888887 8889999 9999999999987665 47789999999
Q ss_pred HHHHHHHHHHHhhh-hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcCC------CCCCCccEEEEe
Q 008235 266 QEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLKA------IDVSGVSLLVVD 337 (573)
Q Consensus 266 reLa~Qi~~~~~~l-~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~~------~~l~~l~~lViD 337 (573)
--||.|=++.+..+ ..+|++++++.|+.+........ .+||+++|...| .|+|+.+. ...+.+.+.|||
T Consensus 131 eyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y---~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvD 207 (796)
T PRK12906 131 EYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY---NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVD 207 (796)
T ss_pred HHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh---cCCCeecCCccccccchhhccccchhhhhccCcceeeec
Confidence 99999999999886 66799999999887665443322 589999998776 34444321 234678899999
Q ss_pred CcccccC-------------------cchHHHHHHhcCCC-------------------CcEE-----------------
Q 008235 338 RLDSLSK-------------------GDTLSLIRQSISGK-------------------PHTV----------------- 362 (573)
Q Consensus 338 Ead~ll~-------------------~~~l~~Il~~l~~~-------------------~q~l----------------- 362 (573)
|+|.++= ...+..+...+... .+.+
T Consensus 208 EvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~ 287 (796)
T PRK12906 208 EVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLD 287 (796)
T ss_pred cchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCc
Confidence 9997652 11222222221110 0111
Q ss_pred --------------------------------------------------------------------------------
Q 008235 363 -------------------------------------------------------------------------------- 362 (573)
Q Consensus 363 -------------------------------------------------------------------------------- 362 (573)
T Consensus 288 ~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It 367 (796)
T PRK12906 288 NLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATIT 367 (796)
T ss_pred cccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeeh
Confidence
Q ss_pred ------------EEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEE-EEEEcCChhHHHHHHHHHHHHHhccCC
Q 008235 363 ------------VFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQ-SVNVCASDEEKILKGIQVLDHAYGDHF 429 (573)
Q Consensus 363 ------------~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~-~~~~~~~~~~k~~~l~~~L~~~~~~~~ 429 (573)
++|.|......++...| +-+ ++.+... .+.....+ ..++. ....|+..+.+.+......
T Consensus 368 ~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY-~l~--vv~IPtn--kp~~r~d~~d~i~~-t~~~K~~al~~~i~~~~~~-- 439 (796)
T PRK12906 368 YQNFFRMYKKLSGMTGTAKTEEEEFREIY-NME--VITIPTN--RPVIRKDSPDLLYP-TLDSKFNAVVKEIKERHAK-- 439 (796)
T ss_pred HHHHHHhcchhhccCCCCHHHHHHHHHHh-CCC--EEEcCCC--CCeeeeeCCCeEEc-CHHHHHHHHHHHHHHHHhC--
Confidence 22222221111111111 111 1222211 11111111 12222 3577888888888765433
Q ss_pred CCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHHH---HHHHHhcCCCCCeEEEEeccccCCCcc---CCCC-
Q 008235 430 HSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHI---KNSVEADGRKRPAVSMIDKDHISTAEL---EEYE- 502 (573)
Q Consensus 430 ~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~---l~~F~~~g~~~~l~~lvd~~s~rGlDi---p~v~- 502 (573)
+.++||||+|+..++.|+..|...|+++..+ |++..+. +-. +.|+.+.+...||++ .||+|| ++|.
T Consensus 440 ---g~pvLI~t~si~~se~ls~~L~~~gi~~~~L-na~~~~~Ea~ii~--~ag~~g~VtIATnmA-GRGtDI~l~~~V~~ 512 (796)
T PRK12906 440 ---GQPVLVGTVAIESSERLSHLLDEAGIPHAVL-NAKNHAKEAEIIM--NAGQRGAVTIATNMA-GRGTDIKLGPGVKE 512 (796)
T ss_pred ---CCCEEEEeCcHHHHHHHHHHHHHCCCCeeEe-cCCcHHHHHHHHH--hcCCCceEEEEeccc-cCCCCCCCCcchhh
Confidence 5699999999999999999999999999875 7665442 222 244444443336899 499999 4899
Q ss_pred ----EEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccH
Q 008235 503 ----VVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541 (573)
Q Consensus 503 ----~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~ 541 (573)
|||+++.|.|...|.|+.|||||.|.+|.+..|++.+|.
T Consensus 513 ~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 513 LGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred hCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 999999999999999999999999999999999987753
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.93 E-value=2.1e-24 Score=230.32 Aligned_cols=290 Identities=13% Similarity=0.053 Sum_probs=187.5
Q ss_pred CCCCCHHHHHHHHHHhc----CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHH
Q 008235 200 PLFVNSWGIEFWKCYSS----AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (573)
Q Consensus 200 ~~~~t~iQ~~aip~il~----g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~ 275 (573)
.+++.|+|.+|+..+.. ++..++++||| +|||+.++.-+- .+ ...+||||||++|+.|+++.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTG-aGKT~va~~~~~-~~------------~~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTG-AGKTVVAAEAIA-EL------------KRSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCC-CCHHHHHHHHHH-Hh------------cCCEEEEECcHHHHHHHHHH
Confidence 34569999999999998 89999999999 999988654333 22 22399999999999999876
Q ss_pred HhhhhcCCcEEEEeCCCCCHHHHHHHhhcCC-CcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHh
Q 008235 276 CKPLKAFGIHTVSLHPGAAIDHQITGLRSCE-PEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQS 354 (573)
Q Consensus 276 ~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~-~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~ 354 (573)
+.........+. .+||..... . ..|+|+|-..+........+..++..+||+||||++. .+....+...
T Consensus 100 ~~~~~~~~~~~g-~~~~~~~~~--------~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~-a~~~~~~~~~ 169 (442)
T COG1061 100 LKKFLLLNDEIG-IYGGGEKEL--------EPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLP-APSYRRILEL 169 (442)
T ss_pred HHHhcCCccccc-eecCceecc--------CCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCC-cHHHHHHHHh
Confidence 666533222233 334332221 2 3699999877755321122334479999999999998 4445555555
Q ss_pred cCCCCcEEEEeccCCccH---HHHHHHHhcCCceEEEcCCCcc---ccccceEEEEEEcC-C------------------
Q 008235 355 ISGKPHTVVFNDCLTYTS---VPAVQNLLLGSINRLSLNQSVA---SQSACIIQSVNVCA-S------------------ 409 (573)
Q Consensus 355 l~~~~q~l~~SAT~~~~~---~~~~~~~l~~~~~~i~~~~~~~---~~~~~i~~~~~~~~-~------------------ 409 (573)
+......+++|||++..- ......+++ |+ .+.....+. ..........+.+. .
T Consensus 170 ~~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~-vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~ 247 (442)
T COG1061 170 LSAAYPRLGLTATPEREDGGRIGDLFDLIG-PI-VYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELL 247 (442)
T ss_pred hhcccceeeeccCceeecCCchhHHHHhcC-Ce-EeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhh
Confidence 543333899999977432 111111221 21 222221100 00011111111110 0
Q ss_pred ------------------hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCC----C
Q 008235 410 ------------------DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC----I 467 (573)
Q Consensus 410 ------------------~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~----~ 467 (573)
...+...+..++.... . ..++||||.+...+..++..|...|+ +..+.+. +
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~e 320 (442)
T COG1061 248 RARGTLRAENEARRIAIASERKIAAVRGLLLKHA---R---GDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEE 320 (442)
T ss_pred hhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc---C---CCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHH
Confidence 1112222222222221 1 56999999999999999999998877 4333332 5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhcccc
Q 008235 468 VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMAR 525 (573)
Q Consensus 468 ~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR 525 (573)
+.++++.| +.|...+|++ +++.+ .|+|+|+++++|......|...|+||+||.-|
T Consensus 321 R~~il~~f-r~g~~~~lv~-~~vl~-EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 321 REAILERF-RTGGIKVLVT-VKVLD-EGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHHHH-HcCCCCEEEE-eeecc-ceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 67799999 8877777666 46775 79999999999999999999999999999999
No 91
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1.9e-24 Score=237.57 Aligned_cols=358 Identities=15% Similarity=0.125 Sum_probs=244.5
Q ss_pred hHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcC-CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccC-CC
Q 008235 176 SKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEG-FS 253 (573)
Q Consensus 176 ~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~-~~ 253 (573)
+.++.|...++ .|..+. .+||.....+++.+ .++++||||| +|||...++-+|+.+........ ..
T Consensus 294 selP~Wnq~aF------~g~~sL-----NrIQS~v~daAl~~~EnmLlCAPTG-aGKTNVAvLtiLqel~~h~r~dgs~n 361 (1674)
T KOG0951|consen 294 SELPKWNQPAF------FGKQSL-----NRIQSKVYDAALRGDENMLLCAPTG-AGKTNVAVLTILQELGNHLREDGSVN 361 (1674)
T ss_pred cCCcchhhhhc------ccchhh-----hHHHHHHHHHHhcCcCcEEEeccCC-CCchHHHHHHHHHHHhccccccccee
Confidence 33444445554 344444 89999999999998 7899999999 99999999999999876643211 11
Q ss_pred CCCcEEEEEcccHHHHHHHHHHH-hhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCC---CC
Q 008235 254 FTGPFLLFLVSSQEKAAKVRSVC-KPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID---VS 329 (573)
Q Consensus 254 ~~~~~~Lil~PtreLa~Qi~~~~-~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~---l~ 329 (573)
-...++++++|+.+|++.+...+ ++++.+||+|.-.+|......+. +. +.+|+|+||+.+ |.+.++.-+ .+
T Consensus 362 l~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q--ie--eTqVIV~TPEK~-DiITRk~gdraY~q 436 (1674)
T KOG0951|consen 362 LAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ--IE--ETQVIVTTPEKW-DIITRKSGDRAYEQ 436 (1674)
T ss_pred cccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhh--hh--cceeEEeccchh-hhhhcccCchhHHH
Confidence 13458999999999999777654 55788999999999987654432 22 578999999986 555554322 34
Q ss_pred CccEEEEeCcccccC--cchHHHHHHhc-------CCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccce
Q 008235 330 GVSLLVVDRLDSLSK--GDTLSLIRQSI-------SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACI 400 (573)
Q Consensus 330 ~l~~lViDEad~ll~--~~~l~~Il~~l-------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i 400 (573)
-++++|+||.|.+.| ++.++.|.... ...++.+++|||+|+ ..+++..+..++...+..+++ ..+-.+
T Consensus 437 lvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPN-y~DV~~Fl~v~~~glf~fd~s--yRpvPL 513 (1674)
T KOG0951|consen 437 LVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPN-YEDVASFLRVDPEGLFYFDSS--YRPVPL 513 (1674)
T ss_pred HHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCc-hhhhHHHhccCcccccccCcc--cCcCCc
Confidence 689999999998877 77887777665 246889999999998 445554444444223333332 233457
Q ss_pred EEEEEEcCC--hhHHHHHHHHHH-HHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC-------------C-------
Q 008235 401 IQSVNVCAS--DEEKILKGIQVL-DHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK-------------G------- 457 (573)
Q Consensus 401 ~~~~~~~~~--~~~k~~~l~~~L-~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~-------------g------- 457 (573)
.|.|+-+.. ...+++.+-+.. .+.+...+ ..++||||.|++++.+.|..++.. +
T Consensus 514 ~qq~Igi~ek~~~~~~qamNe~~yeKVm~~ag---k~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eil 590 (1674)
T KOG0951|consen 514 KQQYIGITEKKPLKRFQAMNEACYEKVLEHAG---KNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREIL 590 (1674)
T ss_pred cceEeccccCCchHHHHHHHHHHHHHHHHhCC---CCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhh
Confidence 788876642 123333333332 23333333 589999999999988888776521 0
Q ss_pred -----------------CCeeeecCC-----CHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEE----eCCC--
Q 008235 458 -----------------YSISTGSNC-----IVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVI----VPDF-- 509 (573)
Q Consensus 458 -----------------~~~~~~~~~-----~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI----~~d~-- 509 (573)
+. ..+||+ +|.-+.+-| ++|...+++. + .|-|+|++.|.-+++| .||+
T Consensus 591 rtea~~~kn~dLkdLLpyg-faIHhAGl~R~dR~~~EdLf-~~g~iqvlvs-t-atlawgvnlpahtViikgtqvy~pek 666 (1674)
T KOG0951|consen 591 RTEAGQAKNPDLKDLLPYG-FAIHHAGLNRKDRELVEDLF-ADGHIQVLVS-T-ATLAWGVNLPAHTVIIKGTQVYDPEK 666 (1674)
T ss_pred hhhhhcccChhHHHHhhcc-ceeeccCCCcchHHHHHHHH-hcCceeEEEe-e-hhhhhhcCCCcceEEecCccccCccc
Confidence 01 134554 444567778 9999999877 3 3325699999888777 3554
Q ss_pred ----CCCHHHHHHHHhccccCCC--cceEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHhh
Q 008235 510 ----IISMKNYVEILTSMARHTV--SGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDLC 566 (573)
Q Consensus 510 ----P~s~~~YiqR~GR~gR~g~--~G~~i~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~ 566 (573)
+.++.+-+||+||+||.+. .|..+++-...+..+...+ ++|.+|-+-+-+.
T Consensus 667 g~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~------mn~qLpiesq~~~ 723 (1674)
T KOG0951|consen 667 GRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSL------MNQQLPIESQFVS 723 (1674)
T ss_pred CccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHh------hhhcCCChHHHHH
Confidence 5688999999999999874 4666766666666555443 3455655444333
No 92
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=9.6e-24 Score=224.27 Aligned_cols=320 Identities=11% Similarity=0.080 Sum_probs=231.2
Q ss_pred CCCCCCHHHHHHHHHHhcC------CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHH
Q 008235 199 NPLFVNSWGIEFWKCYSSA------KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (573)
Q Consensus 199 ~~~~~t~iQ~~aip~il~g------~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi 272 (573)
-||.+|.-|.+++..|..+ .+=+++.--| ||||++.++.++..+. .|.++..++||--||.|-
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVG-SGKTvVA~laml~ai~----------~G~Q~ALMAPTEILA~QH 327 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVG-SGKTVVALLAMLAAIE----------AGYQAALMAPTEILAEQH 327 (677)
T ss_pred CCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcC-CCHHHHHHHHHHHHHH----------cCCeeEEeccHHHHHHHH
Confidence 4678899999999999875 3558899999 9999999999997775 488999999999999999
Q ss_pred HHHHhhh-hcCCcEEEEeCCCCC---HHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchH
Q 008235 273 RSVCKPL-KAFGIHTVSLHPGAA---IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTL 348 (573)
Q Consensus 273 ~~~~~~l-~~~~i~~~~~~gg~~---~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l 348 (573)
+..+..+ ..+||++..++|... .......+.+|..+|+|||-.- -+..+.++++.++|+||-||+. -.+=
T Consensus 328 ~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL-----iQd~V~F~~LgLVIiDEQHRFG-V~QR 401 (677)
T COG1200 328 YESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL-----IQDKVEFHNLGLVIIDEQHRFG-VHQR 401 (677)
T ss_pred HHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh-----hhcceeecceeEEEEecccccc-HHHH
Confidence 9999886 778999999998654 4455677888779999999543 3445779999999999999986 2222
Q ss_pred HHHHHhcCC-CCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhcc
Q 008235 349 SLIRQSISG-KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427 (573)
Q Consensus 349 ~~Il~~l~~-~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~ 427 (573)
..+.+ -.. .+.+++||||.=+ +.++-..+.+- .+++-+.-......|.-..+..+ +...+++.+..-+..
T Consensus 402 ~~L~~-KG~~~Ph~LvMTATPIP--RTLAlt~fgDl--dvS~IdElP~GRkpI~T~~i~~~----~~~~v~e~i~~ei~~ 472 (677)
T COG1200 402 LALRE-KGEQNPHVLVMTATPIP--RTLALTAFGDL--DVSIIDELPPGRKPITTVVIPHE----RRPEVYERIREEIAK 472 (677)
T ss_pred HHHHH-hCCCCCcEEEEeCCCch--HHHHHHHhccc--cchhhccCCCCCCceEEEEeccc----cHHHHHHHHHHHHHc
Confidence 22222 233 6889999999654 44555555543 23332222233345555555433 333444555554443
Q ss_pred CCCCCCCcEEEEecChh--------hHHHHHHHHHHCC--CCeeeecCCCH-----HHHHHHHHhcCCCCCeEEEEeccc
Q 008235 428 HFHSEPLKVLYIVGKDS--------KFQNLVSTLKCKG--YSISTGSNCIV-----SHIKNSVEADGRKRPAVSMIDKDH 492 (573)
Q Consensus 428 ~~~~~~~k~lIF~~s~~--------~~~~l~~~L~~~g--~~~~~~~~~~~-----~~~l~~F~~~g~~~~l~~lvd~~s 492 (573)
+.++.+.|+-++ .|..++..|.... +.+ .+.||.| ++++++| ++|...+|++++ |
T Consensus 473 -----GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~v-gL~HGrm~~~eKd~vM~~F-k~~e~~ILVaTT-V-- 542 (677)
T COG1200 473 -----GRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKV-GLVHGRMKPAEKDAVMEAF-KEGEIDILVATT-V-- 542 (677)
T ss_pred -----CCEEEEEeccccccccchhhhHHHHHHHHHHHccccee-EEEecCCChHHHHHHHHHH-HcCCCcEEEEee-E--
Confidence 569999998765 4567777887542 334 3578854 5699999 999999988743 3
Q ss_pred cC-CCccCCCCEEEeCCCCCC-HHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHc
Q 008235 493 IS-TAELEEYEVVIVPDFIIS-MKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQC 554 (573)
Q Consensus 493 ~r-GlDip~v~~VI~~d~P~s-~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~ 554 (573)
+. |+|+|+.++.|.++.-+= ....-|=-||+||++..+.|++++.+..-...++=.+++.++
T Consensus 543 IEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t 606 (677)
T COG1200 543 IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRET 606 (677)
T ss_pred EEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhc
Confidence 34 999999999999887653 445566679999999999999999887634444444455544
No 93
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=1.2e-23 Score=243.29 Aligned_cols=302 Identities=12% Similarity=0.050 Sum_probs=191.7
Q ss_pred CCCHHHHHHHHHHh----cC-CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHH
Q 008235 202 FVNSWGIEFWKCYS----SA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (573)
Q Consensus 202 ~~t~iQ~~aip~il----~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~ 276 (573)
.+.++|.+||..+. .| +..+++++|| ||||++. +.++.++.... ...++|||+|+++|+.|+.+.|
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTG-SGKT~ta-i~li~~L~~~~-------~~~rVLfLvDR~~L~~Qa~~~F 483 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATG-TGKTRTA-IALMYRLLKAK-------RFRRILFLVDRSALGEQAEDAF 483 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCC-CCHHHHH-HHHHHHHHhcC-------ccCeEEEEecHHHHHHHHHHHH
Confidence 35999999998775 34 6899999999 9999884 45556665432 3468999999999999999999
Q ss_pred hhhhcC-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC-----CCCCCCccEEEEeCcccccC------
Q 008235 277 KPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK-----AIDVSGVSLLVVDRLDSLSK------ 344 (573)
Q Consensus 277 ~~l~~~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~-----~~~l~~l~~lViDEad~ll~------ 344 (573)
..+... +.....+++...... ........|+|+|...|...+... ...+..+++|||||||+-..
T Consensus 484 ~~~~~~~~~~~~~i~~i~~L~~---~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~ 560 (1123)
T PRK11448 484 KDTKIEGDQTFASIYDIKGLED---KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMS 560 (1123)
T ss_pred Hhcccccccchhhhhchhhhhh---hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccc
Confidence 887322 212222232211111 111224689999999987665321 24567899999999999641
Q ss_pred ------------cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCc--cccc-----cceEE---
Q 008235 345 ------------GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSV--ASQS-----ACIIQ--- 402 (573)
Q Consensus 345 ------------~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~--~~~~-----~~i~~--- 402 (573)
...++.|+..+ +.-.++||||..... ..+++.|+..+++.... .... ..+.-
T Consensus 561 ~~~~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t----~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~ 634 (1123)
T PRK11448 561 EGELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHT----TEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLS 634 (1123)
T ss_pred cchhccchhhhHHHHHHHHHhhc--CccEEEEecCCccch----hHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEec
Confidence 24566777765 356899999986432 22333443222221100 0000 00000
Q ss_pred --------------------EE--EEcCCh--------------hHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhH
Q 008235 403 --------------------SV--NVCASD--------------EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKF 446 (573)
Q Consensus 403 --------------------~~--~~~~~~--------------~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~ 446 (573)
.+ ...+.. ......++..|..++.... ++++||||.++.+|
T Consensus 635 ~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~---~~KtiIF~~s~~HA 711 (1123)
T PRK11448 635 QEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTG---EGKTLIFAATDAHA 711 (1123)
T ss_pred cccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccC---CCcEEEEEcCHHHH
Confidence 00 000000 0011122233334443333 57999999999999
Q ss_pred HHHHHHHHHC------CC---CeeeecCC---CHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHH
Q 008235 447 QNLVSTLKCK------GY---SISTGSNC---IVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMK 514 (573)
Q Consensus 447 ~~l~~~L~~~------g~---~~~~~~~~---~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~ 514 (573)
+.++..|... ++ .+.. ++| ++.+.+++| +++....+++.||+.+ .|+|+|.|++||.+++|.|..
T Consensus 712 ~~i~~~L~~~f~~~~~~~~~~~v~~-itg~~~~~~~li~~F-k~~~~p~IlVsvdmL~-TG~DvP~v~~vVf~rpvkS~~ 788 (1123)
T PRK11448 712 DMVVRLLKEAFKKKYGQVEDDAVIK-ITGSIDKPDQLIRRF-KNERLPNIVVTVDLLT-TGIDVPSICNLVFLRRVRSRI 788 (1123)
T ss_pred HHHHHHHHHHHHhhcCCcCccceEE-EeCCccchHHHHHHH-hCCCCCeEEEEecccc-cCCCcccccEEEEecCCCCHH
Confidence 9999887653 22 2222 344 456799999 7777644433368885 899999999999999999999
Q ss_pred HHHHHHhccccCC
Q 008235 515 NYVEILTSMARHT 527 (573)
Q Consensus 515 ~YiqR~GR~gR~g 527 (573)
.|+||+||+.|..
T Consensus 789 lf~QmIGRgtR~~ 801 (1123)
T PRK11448 789 LYEQMLGRATRLC 801 (1123)
T ss_pred HHHHHHhhhccCC
Confidence 9999999999964
No 94
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=3.8e-23 Score=227.78 Aligned_cols=309 Identities=10% Similarity=0.055 Sum_probs=208.9
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~ 282 (573)
+++|.-.--.+..|+ |+.++|| +|||++|.+|++...+ .|..+.||+||++||.|..+++..+ ..+
T Consensus 84 ydVQliGgl~L~~G~--IaEm~TG-EGKTL~a~lp~~l~al----------~g~~VhIvT~ndyLA~RD~e~m~~l~~~l 150 (908)
T PRK13107 84 FDVQLLGGMVLDSNR--IAEMRTG-EGKTLTATLPAYLNAL----------TGKGVHVITVNDYLARRDAENNRPLFEFL 150 (908)
T ss_pred CchHHhcchHhcCCc--cccccCC-CCchHHHHHHHHHHHh----------cCCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 888887766666665 8899999 9999999999987665 3556999999999999999999997 557
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcC-CCCC-----CCccEEEEeCcccccC-----------
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLK-AIDV-----SGVSLLVVDRLDSLSK----------- 344 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~-~~~l-----~~l~~lViDEad~ll~----------- 344 (573)
|+++.++++|.+... ....+++||++|||++| .|+|..+ .+.. +.+.++||||||.|+-
T Consensus 151 Glsv~~i~~~~~~~~---r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg 227 (908)
T PRK13107 151 GLTVGINVAGLGQQE---KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISG 227 (908)
T ss_pred CCeEEEecCCCCHHH---HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecC
Confidence 999999999988633 33334799999999999 8998876 3333 7899999999998765
Q ss_pred --------cchHHHHHHhcC-------------------CCCcEEEEecc--------C--------------------C
Q 008235 345 --------GDTLSLIRQSIS-------------------GKPHTVVFNDC--------L--------------------T 369 (573)
Q Consensus 345 --------~~~l~~Il~~l~-------------------~~~q~l~~SAT--------~--------------------~ 369 (573)
+..+..+...+- ...+.+.++-. + .
T Consensus 228 ~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~ 307 (908)
T PRK13107 228 AAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLL 307 (908)
T ss_pred CCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHH
Confidence 111111121111 01111222110 0 0
Q ss_pred ccHHHHHH--HHhcCCce--------------------------------------------------------------
Q 008235 370 YTSVPAVQ--NLLLGSIN-------------------------------------------------------------- 385 (573)
Q Consensus 370 ~~~~~~~~--~~l~~~~~-------------------------------------------------------------- 385 (573)
..+...++ .++...+.
T Consensus 308 ~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL 387 (908)
T PRK13107 308 HHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKL 387 (908)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHh
Confidence 00000000 01111100
Q ss_pred ---------------------EEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChh
Q 008235 386 ---------------------RLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDS 444 (573)
Q Consensus 386 ---------------------~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~ 444 (573)
++.+... .+.....+.-.+......|+..+.+-+...... +.++||||+|+.
T Consensus 388 ~GMTGTa~te~~Ef~~iY~l~Vv~IPTn--kp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~-----GrpVLV~t~sv~ 460 (908)
T PRK13107 388 AGMTGTADTEAFEFQHIYGLDTVVVPTN--RPMVRKDMADLVYLTADEKYQAIIKDIKDCRER-----GQPVLVGTVSIE 460 (908)
T ss_pred hcccCCChHHHHHHHHHhCCCEEECCCC--CCccceeCCCcEEeCHHHHHHHHHHHHHHHHHc-----CCCEEEEeCcHH
Confidence 1111111 111111111111223578888888888776554 469999999999
Q ss_pred hHHHHHHHHHHCCCCeeeecCCCHHH-----HHHHHHhcCCCCCeEEEEeccccCCCccCC-------------------
Q 008235 445 KFQNLVSTLKCKGYSISTGSNCIVSH-----IKNSVEADGRKRPAVSMIDKDHISTAELEE------------------- 500 (573)
Q Consensus 445 ~~~~l~~~L~~~g~~~~~~~~~~~~~-----~l~~F~~~g~~~~l~~lvd~~s~rGlDip~------------------- 500 (573)
.++.|+..|...|+++..+ |++..+ +.+.| +.|. ++++ ||++. ||+||.=
T Consensus 461 ~se~ls~~L~~~gi~~~vL-nak~~~~Ea~ii~~Ag-~~G~--VtIA-TnmAG-RGTDIkLggn~~~~~~~~~~~~~~~~ 534 (908)
T PRK13107 461 QSELLARLMVKEKIPHEVL-NAKFHEREAEIVAQAG-RTGA--VTIA-TNMAG-RGTDIVLGGNWNMEIEALENPTAEQK 534 (908)
T ss_pred HHHHHHHHHHHCCCCeEec-cCcccHHHHHHHHhCC-CCCc--EEEe-cCCcC-CCcceecCCchHHhhhhhcchhhHHH
Confidence 9999999999999999875 665433 45555 4444 3333 68885 9999961
Q ss_pred -------------C-----CEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccH
Q 008235 501 -------------Y-----EVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541 (573)
Q Consensus 501 -------------v-----~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~ 541 (573)
| =|||--..+.|..-=-|=.||+||-|.+|.+-.|++-+|.
T Consensus 535 ~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 535 AKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 2 2788888999988888999999999999999999986653
No 95
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.92 E-value=4.1e-23 Score=234.12 Aligned_cols=329 Identities=11% Similarity=0.032 Sum_probs=197.4
Q ss_pred CCCCHHHHHHHHHHhcC--CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 201 LFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
+.+-|+|..+...++.. ..+|+.-..| .|||+-.++-+-+.+... ..-++|||||+ .|..|+...+..
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvG-LGKTIeAglil~~l~~~g--------~~~rvLIVvP~-sL~~QW~~El~~ 220 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVG-LGKTIEAGMIIHQQLLTG--------RAERVLILVPE-TLQHQWLVEMLR 220 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCc-CcHHHHHHHHHHHHHHcC--------CCCcEEEEcCH-HHHHHHHHHHHH
Confidence 44599999988776653 4688889999 999998766554444322 23479999997 799999988754
Q ss_pred hhcCCcEEEEeCCCCCHHHHHH--HhhcCCCcEEEeCHHHHHHHHHc-CCCCCCCccEEEEeCcccccC----cchHHHH
Q 008235 279 LKAFGIHTVSLHPGAAIDHQIT--GLRSCEPEFLVSTPERLLKLVSL-KAIDVSGVSLLVVDRLDSLSK----GDTLSLI 351 (573)
Q Consensus 279 l~~~~i~~~~~~gg~~~~~~~~--~l~~~~~~IlV~TP~rL~~~l~~-~~~~l~~l~~lViDEad~ll~----~~~l~~I 351 (573)
. +++....+.++........ .-.. ..+++|+|-+.|...-.. ..+.-...++|||||||++-. .......
T Consensus 221 k--F~l~~~i~~~~~~~~~~~~~~~pf~-~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~ 297 (956)
T PRK04914 221 R--FNLRFSLFDEERYAEAQHDADNPFE-TEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQV 297 (956)
T ss_pred H--hCCCeEEEcCcchhhhcccccCccc-cCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHH
Confidence 2 2555444443321110000 0011 357999997766431100 111223678999999999962 1122223
Q ss_pred HHhc-CCCCcEEEEeccCCcc-HHH------------------H-------------HHHHhc-CCc-------------
Q 008235 352 RQSI-SGKPHTVVFNDCLTYT-SVP------------------A-------------VQNLLL-GSI------------- 384 (573)
Q Consensus 352 l~~l-~~~~q~l~~SAT~~~~-~~~------------------~-------------~~~~l~-~~~------------- 384 (573)
+..+ .....++++|||.-.. ..+ + +..++. .+.
T Consensus 298 v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~ 377 (956)
T PRK04914 298 VEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLG 377 (956)
T ss_pred HHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhc
Confidence 3333 3345789999996421 110 1 000000 000
Q ss_pred -----------------------------------eEEEcCCCc---cccccceEEEEEE-cC-----------------
Q 008235 385 -----------------------------------NRLSLNQSV---ASQSACIIQSVNV-CA----------------- 408 (573)
Q Consensus 385 -----------------------------------~~i~~~~~~---~~~~~~i~~~~~~-~~----------------- 408 (573)
..+-+.... ...+....+.+.. ++
T Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~ 457 (956)
T PRK04914 378 EQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARD 457 (956)
T ss_pred ccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHh
Confidence 000000000 0000011111111 10
Q ss_pred ------------------ChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHH-HHCCCCeeeecCCC--
Q 008235 409 ------------------SDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTL-KCKGYSISTGSNCI-- 467 (573)
Q Consensus 409 ------------------~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L-~~~g~~~~~~~~~~-- 467 (573)
..+.|...|.++|.. .. ..++||||+++..+..|+..| ...|+.+..+ ||+
T Consensus 458 ~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~----~~---~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~i-hG~~s 529 (956)
T PRK04914 458 MLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKS----HR---SEKVLVICAKAATALQLEQALREREGIRAAVF-HEGMS 529 (956)
T ss_pred hcCHHHHHHHHhhhhhccccCHHHHHHHHHHHh----cC---CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEE-ECCCC
Confidence 011244444444443 22 579999999999999999999 4679998864 765
Q ss_pred ---HHHHHHHHHhcC--CCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHH
Q 008235 468 ---VSHIKNSVEADG--RKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAA 542 (573)
Q Consensus 468 ---~~~~l~~F~~~g--~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~ 542 (573)
|.++++.| +++ ...++++ +|+.+ +|+|++.+++|||||+|.++..|+||+||++|.|++|.+.+++...+-.
T Consensus 530 ~~eR~~~~~~F-~~~~~~~~VLIs-Tdvgs-eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t 606 (956)
T PRK04914 530 IIERDRAAAYF-ADEEDGAQVLLC-SEIGS-EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGT 606 (956)
T ss_pred HHHHHHHHHHH-hcCCCCccEEEe-chhhc-cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCC
Confidence 45589999 654 4666655 57874 8999999999999999999999999999999999998876666543333
Q ss_pred HHHHHHHHHHH
Q 008235 543 HAGQMIEILEQ 553 (573)
Q Consensus 543 ~~~~l~~~l~~ 553 (573)
.-..|.+.+.+
T Consensus 607 ~~e~i~~~~~~ 617 (956)
T PRK04914 607 AQERLFRWYHE 617 (956)
T ss_pred HHHHHHHHHhh
Confidence 33444444443
No 96
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=2.8e-24 Score=226.09 Aligned_cols=309 Identities=12% Similarity=0.108 Sum_probs=218.7
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh-
Q 008235 200 PLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP- 278 (573)
Q Consensus 200 ~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~- 278 (573)
||.+-|+|..||.++-++..|++.|-|. +|||.+.-..+...+.. .-++||-+|-.+|..|-|+.+..
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTS-AGKTVVAeYAIA~sLr~----------kQRVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTS-AGKTVVAEYAIAMSLRE----------KQRVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecC-CCcchHHHHHHHHHHHh----------cCeEEeeChhhhhcchhHHHHHHH
Confidence 3667899999999999999999999999 99999877766666654 34899999999999999987765
Q ss_pred hhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhc
Q 008235 279 LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSI 355 (573)
Q Consensus 279 l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l 355 (573)
|+..|+ .+|...... .+..+|.|.+.|..||.++.--++.+.|+|+||+|.|-| .--.+.-+-.+
T Consensus 196 F~DVGL----MTGDVTInP--------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIll 263 (1041)
T KOG0948|consen 196 FKDVGL----MTGDVTINP--------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILL 263 (1041)
T ss_pred hcccce----eecceeeCC--------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEec
Confidence 665444 455554433 567999999999999999998899999999999999998 33444455567
Q ss_pred CCCCcEEEEeccCCccHHHHHHHH---hcCCceEEEcCCCccccccceEEEEEE---------cCC----hhHHHHHHHH
Q 008235 356 SGKPHTVVFNDCLTYTSVPAVQNL---LLGSINRLSLNQSVASQSACIIQSVNV---------CAS----DEEKILKGIQ 419 (573)
Q Consensus 356 ~~~~q~l~~SAT~~~~~~~~~~~~---l~~~~~~i~~~~~~~~~~~~i~~~~~~---------~~~----~~~k~~~l~~ 419 (573)
|.+.+.+++|||+|+. .+++.+. -..|.++|..+-. +..+.|+++. ++. .++.+.....
T Consensus 264 P~~vr~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTdyR----PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~ 338 (1041)
T KOG0948|consen 264 PDNVRFVFLSATIPNA-RQFAEWICHIHKQPCHVVYTDYR----PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMS 338 (1041)
T ss_pred cccceEEEEeccCCCH-HHHHHHHHHHhcCCceEEeecCC----CCcceeeeecCCCCeeEEEEecccccchHHHHHHHH
Confidence 9999999999999985 4455554 4577655555432 1234454332 211 1233333333
Q ss_pred HHHHHhccCC-------------------------------CCCCCcEEEEecChhhHHHHHHHHHHCCCCe--------
Q 008235 420 VLDHAYGDHF-------------------------------HSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI-------- 460 (573)
Q Consensus 420 ~L~~~~~~~~-------------------------------~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~-------- 460 (573)
.|...-...+ .++..++|||+-|+++|+.++..+....++.
T Consensus 339 ~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~ 418 (1041)
T KOG0948|consen 339 VLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVE 418 (1041)
T ss_pred HhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHH
Confidence 3322111110 0335799999999999999998776654431
Q ss_pred ------------------------------eeecCCCHHH----HHH-HHHhcCCCCCeEEEEeccccCCCccCCCCEEE
Q 008235 461 ------------------------------STGSNCIVSH----IKN-SVEADGRKRPAVSMIDKDHISTAELEEYEVVI 505 (573)
Q Consensus 461 ------------------------------~~~~~~~~~~----~l~-~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI 505 (573)
..+||+..-- +++ -| ++|-..+|.+ +.+.+ -||+.|.-++|+
T Consensus 419 ~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILF-qEGLvKvLFA-TETFs-iGLNMPAkTVvF 495 (1041)
T KOG0948|consen 419 TIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILF-QEGLVKVLFA-TETFS-IGLNMPAKTVVF 495 (1041)
T ss_pred HHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHH-hccHHHHHHh-hhhhh-hccCCcceeEEE
Confidence 1235655432 222 36 8888888766 43442 599999887776
Q ss_pred e----CCCC----CCHHHHHHHHhccccCCC--cceEEEEeccc
Q 008235 506 V----PDFI----ISMKNYVEILTSMARHTV--SGILHSFFTKD 539 (573)
Q Consensus 506 ~----~d~P----~s~~~YiqR~GR~gR~g~--~G~~i~~~~~~ 539 (573)
- ||-- -+.-.|||++||+||.|. .|.||++++..
T Consensus 496 T~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 496 TAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 3 2211 256789999999999994 69999999864
No 97
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=2.8e-22 Score=215.96 Aligned_cols=304 Identities=11% Similarity=0.074 Sum_probs=211.3
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh-h
Q 008235 201 LFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-L 279 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~-l 279 (573)
|.+-.+|++||-++.+|..|+|.|+|. +|||++.-..+.- .+. .+.+++|-+|-++|..|-++.|+. |
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTS-AGKTvVAEYAial---aq~-------h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTS-AGKTVVAEYAIAL---AQK-------HMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCC-CCcchHHHHHHHH---HHh-------hccceEecchhhhhccchHHHHHHhc
Confidence 334889999999999999999999999 9999986443331 111 367899999999999999998887 4
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcC
Q 008235 280 KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSIS 356 (573)
Q Consensus 280 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~ 356 (573)
...| .++|...... ...++|.|.+.|..||.++.--++++.+||+||+|.+-| .--.+.++-++|
T Consensus 365 ~Dvg----LlTGDvqinP--------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP 432 (1248)
T KOG0947|consen 365 GDVG----LLTGDVQINP--------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLP 432 (1248)
T ss_pred cccc----eeecceeeCC--------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeecc
Confidence 4434 5777765443 578999999999999999998899999999999999988 667778888999
Q ss_pred CCCcEEEEeccCCccHHHHHHHHhc---CCceEEEcCCCccccccceEEEEEEcCC------------------------
Q 008235 357 GKPHTVVFNDCLTYTSVPAVQNLLL---GSINRLSLNQSVASQSACIIQSVNVCAS------------------------ 409 (573)
Q Consensus 357 ~~~q~l~~SAT~~~~~~~~~~~~l~---~~~~~i~~~~~~~~~~~~i~~~~~~~~~------------------------ 409 (573)
...+++++|||.|+. .+++.+.-+ ..+.+++.... +-.++|+++.-.+
T Consensus 433 ~HV~~IlLSATVPN~-~EFA~WIGRtK~K~IyViST~kR----PVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 433 RHVNFILLSATVPNT-LEFADWIGRTKQKTIYVISTSKR----PVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred ccceEEEEeccCCCh-HHHHHHhhhccCceEEEEecCCC----ccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 999999999999985 445554432 12212222111 0112222211100
Q ss_pred --------------------------------------hhHHH--HHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHH
Q 008235 410 --------------------------------------DEEKI--LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNL 449 (573)
Q Consensus 410 --------------------------------------~~~k~--~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l 449 (573)
...+. ....+++..+.... --|+||||-|++.|++.
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~----lLP~VvFvFSkkrCde~ 583 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKN----LLPVVVFVFSKKRCDEY 583 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcc----cCceEEEEEccccHHHH
Confidence 00011 12344444443322 36999999999999999
Q ss_pred HHHHHHCCCCe--------------------------------------eeecCCCHHH-----HHHHHHhcCCCCCeEE
Q 008235 450 VSTLKCKGYSI--------------------------------------STGSNCIVSH-----IKNSVEADGRKRPAVS 486 (573)
Q Consensus 450 ~~~L~~~g~~~--------------------------------------~~~~~~~~~~-----~l~~F~~~g~~~~l~~ 486 (573)
+++|...++.. .+.|||..-- +.--| +.|-..++.+
T Consensus 584 a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LF-qrGlVKVLFA 662 (1248)
T KOG0947|consen 584 ADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLF-QRGLVKVLFA 662 (1248)
T ss_pred HHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHH-hcCceEEEee
Confidence 99886653321 1235665322 33446 7777777766
Q ss_pred EEeccccCCCccCCCCEEEeCCC--------CCCHHHHHHHHhccccCC--CcceEEEEeccc
Q 008235 487 MIDKDHISTAELEEYEVVIVPDF--------IISMKNYVEILTSMARHT--VSGILHSFFTKD 539 (573)
Q Consensus 487 lvd~~s~rGlDip~v~~VI~~d~--------P~s~~~YiqR~GR~gR~g--~~G~~i~~~~~~ 539 (573)
|.+. |.|++.|.-.+|+.-=. --.+.+|.|++|||||.| ..|.+|++....
T Consensus 663 -TETF-AMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 663 -TETF-AMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred -hhhh-hhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 4344 46999998877764210 124679999999999999 468888777543
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.90 E-value=3.1e-21 Score=187.80 Aligned_cols=303 Identities=12% Similarity=0.084 Sum_probs=209.2
Q ss_pred CCCHHHHHHHHHHh----cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHh
Q 008235 202 FVNSWGIEFWKCYS----SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (573)
Q Consensus 202 ~~t~iQ~~aip~il----~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~ 277 (573)
++||.|..+-..++ +..|+|+.|-|| +|||.. +.+.++..+++ |.++.|.+|....|..++..++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~G-aGKTEM-if~~i~~al~~---------G~~vciASPRvDVclEl~~Rlk 165 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTG-AGKTEM-IFQGIEQALNQ---------GGRVCIASPRVDVCLELYPRLK 165 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecC-CCchhh-hHHHHHHHHhc---------CCeEEEecCcccchHHHHHHHH
Confidence 35889998765554 458999999999 999986 56777777764 8899999999999988887776
Q ss_pred hhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC--cchHHHHHHh-
Q 008235 278 PLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQS- 354 (573)
Q Consensus 278 ~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~- 354 (573)
.-- .+..+.++||+.+..- ...++|+|.-.|+.+- ..+++|||||+|...- -..+..-.+.
T Consensus 166 ~aF-~~~~I~~Lyg~S~~~f--------r~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d~~L~~Av~~a 229 (441)
T COG4098 166 QAF-SNCDIDLLYGDSDSYF--------RAPLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDDQSLQYAVKKA 229 (441)
T ss_pred Hhh-ccCCeeeEecCCchhc--------cccEEEEehHHHHHHH-------hhccEEEEeccccccccCCHHHHHHHHHh
Confidence 631 2578889999876443 3579999988776643 3578999999998765 3344444433
Q ss_pred cCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHH------HHHHHHHHHhccC
Q 008235 355 ISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL------KGIQVLDHAYGDH 428 (573)
Q Consensus 355 l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~------~l~~~L~~~~~~~ 428 (573)
.....-++.+|||.+...+ +.........+.+...- ...+-..-.++.+.....++. .|...|+.....
T Consensus 230 rk~~g~~IylTATp~k~l~---r~~~~g~~~~~klp~Rf-H~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~- 304 (441)
T COG4098 230 RKKEGATIYLTATPTKKLE---RKILKGNLRILKLPARF-HGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKT- 304 (441)
T ss_pred hcccCceEEEecCChHHHH---HHhhhCCeeEeecchhh-cCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhc-
Confidence 3456779999999987544 33343333334444321 111223334556655665553 345555554433
Q ss_pred CCCCCCcEEEEecChhhHHHHHHHHHH-CCCCeeeecCC---CHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEE
Q 008235 429 FHSEPLKVLYIVGKDSKFQNLVSTLKC-KGYSISTGSNC---IVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVV 504 (573)
Q Consensus 429 ~~~~~~k~lIF~~s~~~~~~l~~~L~~-~g~~~~~~~~~---~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~V 504 (573)
+.+++||++++...+.++..|+. .+.......|+ .|.+.++.| |+|...+|++++ +.. ||+.+|+|+++
T Consensus 305 ----~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~f-R~G~~~lLiTTT-ILE-RGVTfp~vdV~ 377 (441)
T COG4098 305 ----GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAF-RDGKITLLITTT-ILE-RGVTFPNVDVF 377 (441)
T ss_pred ----CCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHH-HcCceEEEEEee-hhh-cccccccceEE
Confidence 56999999999999999999944 33333112343 577789999 999999987744 664 89999999986
Q ss_pred EeC-CCC-CCHHHHHHHHhccccCCC--cceEEEEeccccHHH
Q 008235 505 IVP-DFI-ISMKNYVEILTSMARHTV--SGILHSFFTKDDAAH 543 (573)
Q Consensus 505 I~~-d~P-~s~~~YiqR~GR~gR~g~--~G~~i~~~~~~d~~~ 543 (573)
|.= .-+ .+-...+|.+||+||.-. .|..+.|-......+
T Consensus 378 Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM 420 (441)
T COG4098 378 VLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAM 420 (441)
T ss_pred EecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHH
Confidence 543 222 477899999999999864 577776655444333
No 99
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=2.7e-21 Score=216.27 Aligned_cols=304 Identities=10% Similarity=0.064 Sum_probs=226.0
Q ss_pred CCCCCCHHHHHHHHHHhcC------CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHH
Q 008235 199 NPLFVNSWGIEFWKCYSSA------KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (573)
Q Consensus 199 ~~~~~t~iQ~~aip~il~g------~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi 272 (573)
.|+.-||-|..||..+.+. .|=|+|.--| -|||.+.+-.++..+. +|.+|.|||||.-||+|-
T Consensus 591 FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVG-FGKTEVAmRAAFkAV~----------~GKQVAvLVPTTlLA~QH 659 (1139)
T COG1197 591 FPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVG-FGKTEVAMRAAFKAVM----------DGKQVAVLVPTTLLAQQH 659 (1139)
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCcchheeecCcC-CcHHHHHHHHHHHHhc----------CCCeEEEEcccHHhHHHH
Confidence 5677799999999998763 6889999999 9999998887776665 578999999999999999
Q ss_pred HHHHhh-hhcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC--cc
Q 008235 273 RSVCKP-LKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GD 346 (573)
Q Consensus 273 ~~~~~~-l~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~--~~ 346 (573)
++.|+. |+.+.|++..+..=.+..++ ...+.+|.+||||||-- +| ++.+.++++.+|||||=|++.- -+
T Consensus 660 y~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL-~kdv~FkdLGLlIIDEEqRFGVk~KE 734 (1139)
T COG1197 660 YETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LL-SKDVKFKDLGLLIIDEEQRFGVKHKE 734 (1139)
T ss_pred HHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hh-CCCcEEecCCeEEEechhhcCccHHH
Confidence 999977 78899999887766665554 45677788999999943 33 4567899999999999999864 33
Q ss_pred hHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhc
Q 008235 347 TLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYG 426 (573)
Q Consensus 347 ~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~ 426 (573)
.+. .+..+.-++-+|||.=+....++-.-+++-- .|...+. ..-.|.-++..-++ ..+.+.|.+-+.
T Consensus 735 kLK----~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlS-vI~TPP~---~R~pV~T~V~~~d~-----~~ireAI~REl~ 801 (1139)
T COG1197 735 KLK----ELRANVDVLTLSATPIPRTLNMSLSGIRDLS-VIATPPE---DRLPVKTFVSEYDD-----LLIREAILRELL 801 (1139)
T ss_pred HHH----HHhccCcEEEeeCCCCcchHHHHHhcchhhh-hccCCCC---CCcceEEEEecCCh-----HHHHHHHHHHHh
Confidence 443 3456778999999976666666655555442 4444432 22234444433322 223333333222
Q ss_pred cCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCee-eecCCCHH-----HHHHHHHhcCCCCCeEEEEeccccCCCccCC
Q 008235 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS-TGSNCIVS-----HIKNSVEADGRKRPAVSMIDKDHISTAELEE 500 (573)
Q Consensus 427 ~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~-~~~~~~~~-----~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~ 500 (573)
. ++++...+|.+++.+.++..|+..-..+. ...||.|. +++.+| -+|+.++|+++| +-. .|||||+
T Consensus 802 R-----gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F-~~g~~dVLv~TT-IIE-tGIDIPn 873 (1139)
T COG1197 802 R-----GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDF-YNGEYDVLVCTT-IIE-TGIDIPN 873 (1139)
T ss_pred c-----CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHH-HcCCCCEEEEee-eee-cCcCCCC
Confidence 2 67999999999999999999998744332 23588664 589999 999999987733 221 3999999
Q ss_pred CCEEEeCCCC-CCHHHHHHHHhccccCCCcceEEEEeccc
Q 008235 501 YEVVIVPDFI-ISMKNYVEILTSMARHTVSGILHSFFTKD 539 (573)
Q Consensus 501 v~~VI~~d~P-~s~~~YiqR~GR~gR~g~~G~~i~~~~~~ 539 (573)
++.+|.-+.- .-..+..|--||+||..+.+.|+.++.+.
T Consensus 874 ANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 874 ANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred CceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 9998876543 24578889999999999999999888764
No 100
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.89 E-value=2.1e-21 Score=217.17 Aligned_cols=307 Identities=10% Similarity=0.057 Sum_probs=212.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh-h
Q 008235 201 LFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-L 279 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~-l 279 (573)
+.+-+||++|+-++.+|..|+++|||| ||||++.-..+...+. ++-+++|.+|.++|..|.++.+.. |
T Consensus 118 F~LD~fQ~~a~~~Ler~esVlV~ApTs-sGKTvVaeyAi~~al~----------~~qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 118 FELDPFQQEAIAILERGESVLVCAPTS-SGKTVVAEYAIALALR----------DGQRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CCcCHHHHHHHHHHhCCCcEEEEccCC-CCcchHHHHHHHHHHH----------cCCceEeccchhhhhhhHHHHHHHHh
Confidence 445899999999999999999999999 9999986655554443 355799999999999999988776 4
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcC
Q 008235 280 KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSIS 356 (573)
Q Consensus 280 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~ 356 (573)
....-.++.++|..+.+. +..++|.|.+.|..|+..+...+..+.+||+||+|.|-+ ....+.++-.+|
T Consensus 187 gdv~~~vGL~TGDv~IN~--------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP 258 (1041)
T COG4581 187 GDVADMVGLMTGDVSINP--------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLP 258 (1041)
T ss_pred hhhhhhccceecceeeCC--------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcC
Confidence 433111244566554433 688999999999999999999999999999999999999 677788888999
Q ss_pred CCCcEEEEeccCCccHHHHHHHHh---cCCceEEEcCCCccccccceEEEEEEcC------ChhHH-----HH-HH----
Q 008235 357 GKPHTVVFNDCLTYTSVPAVQNLL---LGSINRLSLNQSVASQSACIIQSVNVCA------SDEEK-----IL-KG---- 417 (573)
Q Consensus 357 ~~~q~l~~SAT~~~~~~~~~~~~l---~~~~~~i~~~~~~~~~~~~i~~~~~~~~------~~~~k-----~~-~l---- 417 (573)
...|++++|||+|+. .+++.++- ..|+.+|..... +..+.|++..-. ++..+ +. ..
T Consensus 259 ~~v~~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t~~R----pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 259 DHVRFVFLSATVPNA-EEFAEWIQRVHSQPIHVVSTEHR----PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred CCCcEEEEeCCCCCH-HHHHHHHHhccCCCeEEEeecCC----CCCeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 999999999999984 44554443 345433443321 112333332210 01111 00 00
Q ss_pred ----------------------------------HHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC-------
Q 008235 418 ----------------------------------IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK------- 456 (573)
Q Consensus 418 ----------------------------------~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~------- 456 (573)
.+++..+.. .+..++|+|+-|+..|+..+..+...
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~----~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~ 409 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK----DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE 409 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhh----hcCCceEEEEEchhhHHHHHHHhcccccccCCc
Confidence 011211111 12578999999999999988776421
Q ss_pred ---------------------CCC------------eeeecCCCHH-----HHHHHHHhcCCCCCeEEEEeccccCCCcc
Q 008235 457 ---------------------GYS------------ISTGSNCIVS-----HIKNSVEADGRKRPAVSMIDKDHISTAEL 498 (573)
Q Consensus 457 ---------------------g~~------------~~~~~~~~~~-----~~l~~F~~~g~~~~l~~lvd~~s~rGlDi 498 (573)
+++ -..+||+.+- -+..-| +.|-..++.+ +.+. +-|++.
T Consensus 410 ~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lf-q~GLvkvvFa-TeT~-s~GiNm 486 (1041)
T COG4581 410 KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELF-QEGLVKVVFA-TETF-AIGINM 486 (1041)
T ss_pred HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHH-hccceeEEee-hhhh-hhhcCC
Confidence 121 0123565432 245557 8888888877 5455 369999
Q ss_pred CCCCEEE----eCC----CCCCHHHHHHHHhccccCCC--cceEEEEecc
Q 008235 499 EEYEVVI----VPD----FIISMKNYVEILTSMARHTV--SGILHSFFTK 538 (573)
Q Consensus 499 p~v~~VI----~~d----~P~s~~~YiqR~GR~gR~g~--~G~~i~~~~~ 538 (573)
|.=++|+ .+| -+-+...|+|..||+||.|- .|.+|++..+
T Consensus 487 Partvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 487 PARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred cccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 9766664 222 23478999999999999995 5888888544
No 101
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.87 E-value=4.3e-20 Score=201.56 Aligned_cols=290 Identities=11% Similarity=0.072 Sum_probs=205.6
Q ss_pred HHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE
Q 008235 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (573)
Q Consensus 183 ~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil 262 (573)
.+.+.+.+.+.....| ...|.-+...++.|+..-++|||| .||| +|++-+--.+.. .|.+++||
T Consensus 68 ~e~~~~fF~k~~G~~~-----ws~QR~WakR~~rg~SFaiiAPTG-vGKT-Tfg~~~sl~~a~---------kgkr~yii 131 (1187)
T COG1110 68 YEEFEEFFKKATGFRP-----WSAQRVWAKRLVRGKSFAIIAPTG-VGKT-TFGLLMSLYLAK---------KGKRVYII 131 (1187)
T ss_pred HHHHHHHHHHhhCCCc-----hHHHHHHHHHHHcCCceEEEcCCC-Cchh-HHHHHHHHHHHh---------cCCeEEEE
Confidence 3444555555555577 999999999999999999999999 9999 555544433332 36799999
Q ss_pred cccHHHHHHHHHHHhhhhcC--CcEEEE-eCCCCCHHH---HHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEE
Q 008235 263 VSSQEKAAKVRSVCKPLKAF--GIHTVS-LHPGAAIDH---QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVV 336 (573)
Q Consensus 263 ~PtreLa~Qi~~~~~~l~~~--~i~~~~-~~gg~~~~~---~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lVi 336 (573)
+||+.|+.|+++.+..|+.. +..+.. .+|..+..+ -...+.++++||+|+|..-|...+.. +.--+++++++
T Consensus 132 ~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifV 209 (1187)
T COG1110 132 VPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFV 209 (1187)
T ss_pred ecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEE
Confidence 99999999999999998431 233333 555544433 34677778899999998777554432 11135889999
Q ss_pred eCcccccC-cchHHHHHHhcC--------------------------------------------CCCcEEEEeccCCcc
Q 008235 337 DRLDSLSK-GDTLSLIRQSIS--------------------------------------------GKPHTVVFNDCLTYT 371 (573)
Q Consensus 337 DEad~ll~-~~~l~~Il~~l~--------------------------------------------~~~q~l~~SAT~~~~ 371 (573)
|.+|.++. ...+..++..+. ...++++.|||..+.
T Consensus 210 DDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~r 289 (1187)
T COG1110 210 DDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPR 289 (1187)
T ss_pred ccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCC
Confidence 99998776 334444433331 235789999998765
Q ss_pred H--HHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecC---hhhH
Q 008235 372 S--VPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGK---DSKF 446 (573)
Q Consensus 372 ~--~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s---~~~~ 446 (573)
- ..+.+.+|+ +.++.. .....||...|+..+ -...+.++++.+ +.-.|||++. ++.|
T Consensus 290 g~R~~LfReLlg-----FevG~~-~~~LRNIvD~y~~~~----~~e~~~elvk~l--------G~GgLIfV~~d~G~e~a 351 (1187)
T COG1110 290 GSRLKLFRELLG-----FEVGSG-GEGLRNIVDIYVESE----SLEKVVELVKKL--------GDGGLIFVPIDYGREKA 351 (1187)
T ss_pred CchHHHHHHHhC-----CccCcc-chhhhheeeeeccCc----cHHHHHHHHHHh--------CCCeEEEEEcHHhHHHH
Confidence 2 234444444 223322 244456777776653 233344566665 5678999999 8999
Q ss_pred HHHHHHHHHCCCCeeeecCCCHHHHHHHHHhcCCCCCeEEEE---eccccCCCccCC-CCEEEeCCCCC
Q 008235 447 QNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMI---DKDHISTAELEE-YEVVIVPDFII 511 (573)
Q Consensus 447 ~~l~~~L~~~g~~~~~~~~~~~~~~l~~F~~~g~~~~l~~lv---d~~s~rGlDip~-v~~VI~~d~P~ 511 (573)
+++++.|+..|+++... |......++.| ..|...+++.+. .+. +||||.|+ +.++|.|++|+
T Consensus 352 eel~e~Lr~~Gi~a~~~-~a~~~~~le~F-~~GeidvLVGvAsyYG~l-VRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 352 EELAEYLRSHGINAELI-HAEKEEALEDF-EEGEVDVLVGVASYYGVL-VRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred HHHHHHHHhcCceEEEe-eccchhhhhhh-ccCceeEEEEecccccce-eecCCchhheeEEEEecCCc
Confidence 99999999999999864 55558899999 999999987732 455 58999995 78999999993
No 102
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.85 E-value=5.1e-20 Score=200.16 Aligned_cols=329 Identities=13% Similarity=0.149 Sum_probs=215.5
Q ss_pred HhCCCccCCCCCCCHHHHHHH--HHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHH
Q 008235 191 RHDGVEQDNPLFVNSWGIEFW--KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268 (573)
Q Consensus 191 ~~~g~~~p~~~~~t~iQ~~ai--p~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreL 268 (573)
...|.... +.||.+++ |.++.++++|..+||+ .|||++.-+-++..++.. +-.++.+.|...-
T Consensus 217 ~~kgi~~~-----fewq~ecls~~~~~e~~nliys~Pts-~gktlvaeilml~~~l~~---------rr~~llilp~vsi 281 (1008)
T KOG0950|consen 217 KDKGILKL-----FEWQAECLSLPRLLERKNLIYSLPTS-AGKTLVAEILMLREVLCR---------RRNVLLILPYVSI 281 (1008)
T ss_pred HhhhHHHH-----HHHHHHHhcchhhhcccceEEeCCCc-cchHHHHHHHHHHHHHHH---------hhceeEecceeeh
Confidence 34566666 99999986 7888899999999999 999999988888887764 3457888887766
Q ss_pred HHHHHHHHhhh-hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHc--CCCCCCCccEEEEeCcccccC-
Q 008235 269 AAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL--KAIDVSGVSLLVVDRLDSLSK- 344 (573)
Q Consensus 269 a~Qi~~~~~~l-~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~--~~~~l~~l~~lViDEad~ll~- 344 (573)
+..-...+..| ..+|+.+-+.+|+.+.... .+ .-++.|||-++-..++.. ..-.+..+.+|||||.|.+.+
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k-~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~ 356 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RK-RESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDK 356 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCCCCCc----cc-ceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecc
Confidence 65555555555 5569998888876554332 22 468999999987665544 223467799999999999988
Q ss_pred --cchHHHHHHhc-----CCCCcEEEEeccCCccHHHHHHHHhcCCceEEE-cCCCccccccceEEEEEEcCChhHHHHH
Q 008235 345 --GDTLSLIRQSI-----SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLS-LNQSVASQSACIIQSVNVCASDEEKILK 416 (573)
Q Consensus 345 --~~~l~~Il~~l-----~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~-~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 416 (573)
...++.++..+ ....|++++|||+|+. .++..|+...+ +.. ..+........+-..++.. + +...
T Consensus 357 ~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~-y~t~fRPv~L~E~ik~G~~i~~~-~---r~~~ 429 (1008)
T KOG0950|consen 357 GRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFV-YTTRFRPVPLKEYIKPGSLIYES-S---RNKV 429 (1008)
T ss_pred ccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhh-eecccCcccchhccCCCcccccc-h---hhHH
Confidence 55666666544 2346799999999973 34455555332 111 1111100001111111111 0 2212
Q ss_pred HHHHHH---HHhccCC-----------CCCCCcEEEEecChhhHHHHHHHHHHC-----------C--------------
Q 008235 417 GIQVLD---HAYGDHF-----------HSEPLKVLYIVGKDSKFQNLVSTLKCK-----------G-------------- 457 (573)
Q Consensus 417 l~~~L~---~~~~~~~-----------~~~~~k~lIF~~s~~~~~~l~~~L~~~-----------g-------------- 457 (573)
+..+-. ....... ...+.++||||+++..|+.++..+... +
T Consensus 430 lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~ 509 (1008)
T KOG0950|consen 430 LREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRI 509 (1008)
T ss_pred HHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcC
Confidence 222111 1000000 023567999999999999988655321 0
Q ss_pred ---CCe---------eeecCC-----CHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCC----CCCHHHH
Q 008235 458 ---YSI---------STGSNC-----IVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDF----IISMKNY 516 (573)
Q Consensus 458 ---~~~---------~~~~~~-----~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~----P~s~~~Y 516 (573)
... .++||. +|+-+-..| ++|-..++++ +++. +.|++.|..+++|-.-. +-+.-+|
T Consensus 510 ~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~af-r~g~i~vl~a-TSTl-aaGVNLPArRVIiraP~~g~~~l~~~~Y 586 (1008)
T KOG0950|consen 510 PGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAF-REGNIFVLVA-TSTL-AAGVNLPARRVIIRAPYVGREFLTRLEY 586 (1008)
T ss_pred CcccchHHheeccccceecccccccchHHHHHHHH-HhcCeEEEEe-cchh-hccCcCCcceeEEeCCccccchhhhhhH
Confidence 000 123442 455566688 8888888777 4344 46999999998886532 3467899
Q ss_pred HHHHhccccCCC--cceEEEEeccccHHHHHHHHH
Q 008235 517 VEILTSMARHTV--SGILHSFFTKDDAAHAGQMIE 549 (573)
Q Consensus 517 iqR~GR~gR~g~--~G~~i~~~~~~d~~~~~~l~~ 549 (573)
.|++|||||+|- .|.+++++.+.|...+..++.
T Consensus 587 kQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 587 KQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred HhhhhhhhhcccccCcceEEEeeccchhHHHHHHh
Confidence 999999999984 599999999999887776654
No 103
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=2.7e-19 Score=198.28 Aligned_cols=140 Identities=11% Similarity=0.043 Sum_probs=112.9
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC---HHHHHHHHHhcCCCCCeEE
Q 008235 410 DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI---VSHIKNSVEADGRKRPAVS 486 (573)
Q Consensus 410 ~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~---~~~~l~~F~~~g~~~~l~~ 486 (573)
..+|+..|.+.+...... +.++||||+|+..++.|+..|...|+++..+ |+. ++..+-.| +.+...++++
T Consensus 580 ~~eK~~Ali~~I~~~~~~-----grpVLIft~Sve~sE~Ls~~L~~~gI~h~vL-nakq~~REa~Iia~-AG~~g~VtIA 652 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKK-----GQPVLVGTASVEVSETLSRMLRAKRIAHNVL-NAKQHDREAEIVAE-AGQKGAVTIA 652 (1025)
T ss_pred HHHHHHHHHHHHHHHhhC-----CCCEEEEeCcHHHHHHHHHHHHHcCCCceee-cCCHHHhHHHHHHh-cCCCCeEEEe
Confidence 567898888888776443 5699999999999999999999999999875 554 34478888 6666677666
Q ss_pred EEeccccCCCccC---CCC-----EEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHH--H--HHHHHHHHHc
Q 008235 487 MIDKDHISTAELE---EYE-----VVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAH--A--GQMIEILEQC 554 (573)
Q Consensus 487 lvd~~s~rGlDip---~v~-----~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~--~--~~l~~~l~~~ 554 (573)
||++ .||+||+ +|. +||+++.|.+...|.||+|||||.|.+|.+++|++.+|.-+ + ..+..++...
T Consensus 653 -TNMA-GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~ 730 (1025)
T PRK12900 653 -TNMA-GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDRL 730 (1025)
T ss_pred -ccCc-CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHHc
Confidence 7999 5999999 665 45999999999999999999999999999999999876432 2 2566777666
Q ss_pred CCCC
Q 008235 555 GQVV 558 (573)
Q Consensus 555 ~~~v 558 (573)
+.+-
T Consensus 731 ~~~e 734 (1025)
T PRK12900 731 GHEE 734 (1025)
T ss_pred CCCC
Confidence 6543
No 104
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.84 E-value=2.5e-18 Score=198.04 Aligned_cols=341 Identities=10% Similarity=0.107 Sum_probs=206.0
Q ss_pred HHHHHHhCCCccCCCCCCCHHHHHHHH----HHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEE
Q 008235 186 IENAMRHDGVEQDNPLFVNSWGIEFWK----CYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (573)
Q Consensus 186 i~~~l~~~g~~~p~~~~~t~iQ~~aip----~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Li 261 (573)
+...+...||. + +|.|.+.+. .+..|+++++.|||| +|||++|++|++.... . +.+++|
T Consensus 235 ~~~~~~~~~~~-~-----r~~Q~~~~~~i~~~~~~~~~~~~eA~TG-~GKT~ayLlp~~~~~~-~---------~~~vvi 297 (850)
T TIGR01407 235 FSKNIDRLGLE-Y-----RPEQLKLAELVLDQLTHSEKSLIEAPTG-TGKTLGYLLPALYYAI-T---------EKPVVI 297 (850)
T ss_pred HHHhhhhcCCc-c-----CHHHHHHHHHHHHHhccCCcEEEECCCC-CchhHHHHHHHHHHhc-C---------CCeEEE
Confidence 44455556665 4 899998555 566789999999999 9999999999987654 1 347999
Q ss_pred EcccHHHHHHHHH-HHhhhhc-C--CcEEEEeCCCCCH---HH------------H------------------------
Q 008235 262 LVSSQEKAAKVRS-VCKPLKA-F--GIHTVSLHPGAAI---DH------------Q------------------------ 298 (573)
Q Consensus 262 l~PtreLa~Qi~~-~~~~l~~-~--~i~~~~~~gg~~~---~~------------~------------------------ 298 (573)
.+||++|..|+.. .+..+.. + .++++.+.|+.++ .. +
T Consensus 298 ~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~ 377 (850)
T TIGR01407 298 STNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELN 377 (850)
T ss_pred EeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhcc
Confidence 9999999999864 5665532 2 4777777766432 00 0
Q ss_pred --------HHHhh-----------------------cCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---
Q 008235 299 --------ITGLR-----------------------SCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--- 344 (573)
Q Consensus 299 --------~~~l~-----------------------~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~--- 344 (573)
+..+. ...+||||+.-.-|+..+......+....+|||||||+|.+
T Consensus 378 ~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~ 457 (850)
T TIGR01407 378 LKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAE 457 (850)
T ss_pred CCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHH
Confidence 00000 01468999998877776644333345568999999999865
Q ss_pred ---cch-----HHH------------------------------------------------------------------
Q 008235 345 ---GDT-----LSL------------------------------------------------------------------ 350 (573)
Q Consensus 345 ---~~~-----l~~------------------------------------------------------------------ 350 (573)
... +..
T Consensus 458 ~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 537 (850)
T TIGR01407 458 NQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQL 537 (850)
T ss_pred HHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 000 000
Q ss_pred --HHHh-----------c----------C---------------------------CCCcEEEEeccCCcc-HHHHHHHH
Q 008235 351 --IRQS-----------I----------S---------------------------GKPHTVVFNDCLTYT-SVPAVQNL 379 (573)
Q Consensus 351 --Il~~-----------l----------~---------------------------~~~q~l~~SAT~~~~-~~~~~~~~ 379 (573)
.+.. + . ....++++|||++.. -.+.....
T Consensus 538 ~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~ 617 (850)
T TIGR01407 538 RKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQL 617 (850)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHh
Confidence 0000 0 0 113577899999732 12233333
Q ss_pred hcCC-ceEEEcCCCccccccceEEEEEEc--C-----ChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHH
Q 008235 380 LLGS-INRLSLNQSVASQSACIIQSVNVC--A-----SDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVS 451 (573)
Q Consensus 380 l~~~-~~~i~~~~~~~~~~~~i~~~~~~~--~-----~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~ 451 (573)
++-+ .....+.++......+. ..++.. . +.+.-...+.+.|..++... .+++||||+|....+.++.
T Consensus 618 lGl~~~~~~~~~~spf~~~~~~-~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~----~g~~LVlftS~~~l~~v~~ 692 (850)
T TIGR01407 618 LGLTDVHFNTIEPTPLNYAENQ-RVLIPTDAPAIQNKSLEEYAQEIASYIIEITAIT----SPKILVLFTSYEMLHMVYD 692 (850)
T ss_pred cCCCccccceecCCCCCHHHcC-EEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc----CCCEEEEeCCHHHHHHHHH
Confidence 3321 11122211111101111 112111 0 12233345666666665543 4799999999999999999
Q ss_pred HHHH----CCCCeeee-cCCCHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCC--EEEeCCCCC----C--------
Q 008235 452 TLKC----KGYSISTG-SNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYE--VVIVPDFII----S-------- 512 (573)
Q Consensus 452 ~L~~----~g~~~~~~-~~~~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~--~VI~~d~P~----s-------- 512 (573)
.|.. .++.+..- ..+++.++++.| +.+...++++ ++.. .+|||+|+.. .||...+|. +
T Consensus 693 ~L~~~~~~~~~~~l~q~~~~~r~~ll~~F-~~~~~~iLlg-t~sf-~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~ 769 (850)
T TIGR01407 693 MLNELPEFEGYEVLAQGINGSRAKIKKRF-NNGEKAILLG-TSSF-WEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQ 769 (850)
T ss_pred HHhhhccccCceEEecCCCccHHHHHHHH-HhCCCeEEEE-ccee-ecccccCCCceEEEEEeCCCCCCCCCHHHHHHHH
Confidence 9975 34554431 125788899999 8888888766 4666 4799999877 466666553 1
Q ss_pred ------------------HHHHHHHHhccccCCCcceEEEEeccc--cHHHHHHHHHHH
Q 008235 513 ------------------MKNYVEILTSMARHTVSGILHSFFTKD--DAAHAGQMIEIL 551 (573)
Q Consensus 513 ------------------~~~YiqR~GR~gR~g~~G~~i~~~~~~--d~~~~~~l~~~l 551 (573)
+..+.|-+||.=|.....-+++++++. ...+-+.+.+.|
T Consensus 770 ~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 770 KLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred HHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhC
Confidence 123458889999987553345566554 333444454444
No 105
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.84 E-value=7e-19 Score=194.71 Aligned_cols=131 Identities=17% Similarity=0.161 Sum_probs=107.1
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCe
Q 008235 410 DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPA 484 (573)
Q Consensus 410 ~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l 484 (573)
...++..|+..|..+... +.++||||+|+..++.|+..|...|+++..+ |++ |.++++.| +.|...++
T Consensus 424 ~~~qi~~Ll~eI~~~~~~-----g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~l-h~~~~~~eR~~~l~~f-r~G~i~VL 496 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVAR-----NERVLVTTLTKKMAEDLTDYLKELGIKVRYL-HSEIDTLERVEIIRDL-RLGEFDVL 496 (655)
T ss_pred ccchHHHHHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHHhhhccceeee-eCCCCHHHHHHHHHHH-hcCCceEE
Confidence 445666777777776554 4599999999999999999999999998864 664 44589999 88988887
Q ss_pred EEEEeccccCCCccCCCCEEEeCC-----CCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHH
Q 008235 485 VSMIDKDHISTAELEEYEVVIVPD-----FIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEI 550 (573)
Q Consensus 485 ~~lvd~~s~rGlDip~v~~VI~~d-----~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~ 550 (573)
++ +++.+ +|+|+|++++||++| +|++..+|+||+|||||. ..|.+++|++..+..+...|.+.
T Consensus 497 V~-t~~L~-rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 497 VG-INLLR-EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred EE-cChhc-CCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 66 56774 899999999999998 899999999999999998 68999999998665555444443
No 106
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.81 E-value=1.6e-17 Score=185.11 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=121.2
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCe
Q 008235 410 DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPA 484 (573)
Q Consensus 410 ~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l 484 (573)
...++..|...|..+... +.++||||+|+..++.|+..|...|+++..+ ||+ |.++++.| +.|...++
T Consensus 428 ~~~q~~~L~~~L~~~~~~-----g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~-h~~~~~~~R~~~l~~f-~~g~i~vl 500 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAK-----GERVLVTTLTKRMAEDLTDYLKELGIKVRYL-HSDIDTLERVEIIRDL-RLGEFDVL 500 (652)
T ss_pred ccccHHHHHHHHHHHHhC-----CCEEEEEeCCHHHHHHHHHHHhhcceeEEEE-ECCCCHHHHHHHHHHH-HcCCceEE
Confidence 344566777777776654 4599999999999999999999999998764 664 45589999 88888887
Q ss_pred EEEEeccccCCCccCCCCEEEeCCC-----CCCHHHHHHHHhccccCCCcceEEEEecc---------ccHHHHHHHHHH
Q 008235 485 VSMIDKDHISTAELEEYEVVIVPDF-----IISMKNYVEILTSMARHTVSGILHSFFTK---------DDAAHAGQMIEI 550 (573)
Q Consensus 485 ~~lvd~~s~rGlDip~v~~VI~~d~-----P~s~~~YiqR~GR~gR~g~~G~~i~~~~~---------~d~~~~~~l~~~ 550 (573)
++ +++.+ +|+|+|++++||++|. |.+..+|+||+|||||+ ..|.|++|++. .|...++.+...
T Consensus 501 V~-t~~L~-rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 577 (652)
T PRK05298 501 VG-INLLR-EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIA 577 (652)
T ss_pred EE-eCHHh-CCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 66 56774 8999999999999884 89999999999999996 78999999984 577888888889
Q ss_pred HHHcCCCCCHHHHH
Q 008235 551 LEQCGQVVPDALRD 564 (573)
Q Consensus 551 l~~~~~~vp~~l~~ 564 (573)
++..+..+|..+.+
T Consensus 578 ~~~~~~~~~~~~~~ 591 (652)
T PRK05298 578 YNEEHGITPKTIKK 591 (652)
T ss_pred hhhccCCCChhHHH
Confidence 99999999987743
No 107
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.81 E-value=3e-18 Score=162.56 Aligned_cols=177 Identities=21% Similarity=0.289 Sum_probs=146.2
Q ss_pred CHHHHHHHHHHhcC-CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcC
Q 008235 204 NSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~ 282 (573)
+++|.++++.++.+ +.+++.+||| ||||.+++.+++..+.... ...+||++||+.++.|+...+..+...
T Consensus 10 ~~~Q~~~~~~~~~~~~~~~i~~~~G-sGKT~~~~~~~~~~~~~~~--------~~~~l~~~p~~~~~~~~~~~~~~~~~~ 80 (201)
T smart00487 10 RPYQKEAIEALLSGLRDVILAAPTG-SGKTLAALLPALEALKRGK--------GKRVLVLVPTRELAEQWAEELKKLGPS 80 (201)
T ss_pred CHHHHHHHHHHHcCCCcEEEECCCC-CchhHHHHHHHHHHhcccC--------CCcEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999 9999999999 9999999999988776542 357999999999999999988886332
Q ss_pred -CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcCCC
Q 008235 283 -GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGK 358 (573)
Q Consensus 283 -~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~ 358 (573)
.......+++......+..+.....+|+++|++.+.+.+.........+.++||||||.+.. ...+..++..++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~ 160 (201)
T smart00487 81 LGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKN 160 (201)
T ss_pred CCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCcc
Confidence 33455566666655666666663349999999999999988777788899999999999984 67788888888788
Q ss_pred CcEEEEeccCCccHHHHHHHHhcCCceEEEcC
Q 008235 359 PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLN 390 (573)
Q Consensus 359 ~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~ 390 (573)
.+++++|||.+......+..++...+ .+...
T Consensus 161 ~~~v~~saT~~~~~~~~~~~~~~~~~-~~~~~ 191 (201)
T smart00487 161 VQLLLLSATPPEEIENLLELFLNDPV-FIDVG 191 (201)
T ss_pred ceEEEEecCCchhHHHHHHHhcCCCE-EEeCC
Confidence 99999999999988888888888664 45544
No 108
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=8.3e-17 Score=174.13 Aligned_cols=310 Identities=9% Similarity=0.006 Sum_probs=209.5
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~ 282 (573)
+++|.-+.-.++.|+ |+...|| +|||++..+|++...+ .|..+-|++||-.||.|-++++..+ ..+
T Consensus 80 ydvQlig~l~Ll~G~--VaEM~TG-EGKTLvA~l~a~l~AL----------~G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 80 FDVQLLGALRLLAGD--VIEMATG-EGKTLAGAIAAAGYAL----------QGRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred chHHHHHHHHHhCCC--cccccCC-CCHHHHHHHHHHHHHH----------cCCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999884 6688999 9999999999986655 4778999999999999999999986 667
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcC------CCCCCCccEEEEeCcccccC-----------
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLK------AIDVSGVSLLVVDRLDSLSK----------- 344 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~------~~~l~~l~~lViDEad~ll~----------- 344 (573)
|++++++.++.+....... - .+||+++|...+ .|+|+.+ ....+.+.+.||||+|.||=
T Consensus 147 GLsvg~i~~~~~~~err~a-Y--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg 223 (764)
T PRK12326 147 GLTVGWITEESTPEERRAA-Y--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAG 223 (764)
T ss_pred CCEEEEECCCCCHHHHHHH-H--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeC
Confidence 9999999998775543322 2 589999998765 2333332 23356789999999997653
Q ss_pred -------cchHHHHHHhcCCC--------CcEE-----------------------------------------------
Q 008235 345 -------GDTLSLIRQSISGK--------PHTV----------------------------------------------- 362 (573)
Q Consensus 345 -------~~~l~~Il~~l~~~--------~q~l----------------------------------------------- 362 (573)
...+..+...+..+ .+.+
T Consensus 224 ~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~d 303 (764)
T PRK12326 224 STPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVH 303 (764)
T ss_pred CCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCc
Confidence 11122223322211 1111
Q ss_pred ---------------------------------------------------------------EEeccCCccHHHHHHHH
Q 008235 363 ---------------------------------------------------------------VFNDCLTYTSVPAVQNL 379 (573)
Q Consensus 363 ---------------------------------------------------------------~~SAT~~~~~~~~~~~~ 379 (573)
++|.|......++...|
T Consensus 304 YiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY 383 (764)
T PRK12326 304 YIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFY 383 (764)
T ss_pred EEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHh
Confidence 22222222222111111
Q ss_pred hcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCC
Q 008235 380 LLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (573)
Q Consensus 380 l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~ 459 (573)
+-+ ++.+.............. ++. ....|+..+.+-+...... +.|+||.|.|+...+.|+..|...|++
T Consensus 384 -~l~--Vv~IPtnkp~~R~d~~d~-iy~-t~~~k~~Aii~ei~~~~~~-----GrPVLVgt~sI~~SE~ls~~L~~~gI~ 453 (764)
T PRK12326 384 -DLG--VSVIPPNKPNIREDEADR-VYA-TAAEKNDAIVEHIAEVHET-----GQPVLVGTHDVAESEELAERLRAAGVP 453 (764)
T ss_pred -CCc--EEECCCCCCceeecCCCc-eEe-CHHHHHHHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHhCCCc
Confidence 111 122221111111111112 222 2577888888877776554 569999999999999999999999999
Q ss_pred eeeecCCCHHHHHHHHHhcCCCCCeEEEEeccccCCCccC----------CC-----CEEEeCCCCCCHHHHHHHHhccc
Q 008235 460 ISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELE----------EY-----EVVIVPDFIISMKNYVEILTSMA 524 (573)
Q Consensus 460 ~~~~~~~~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip----------~v-----~~VI~~d~P~s~~~YiqR~GR~g 524 (573)
...+...+-.+--+-..+.|+.+.+..-|+.+. ||.||. +| =|||--..|.|..-=-|-.||+|
T Consensus 454 h~vLNAk~~~~EA~IIa~AG~~gaVTIATNMAG-RGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaG 532 (764)
T PRK12326 454 AVVLNAKNDAEEARIIAEAGKYGAVTVSTQMAG-RGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAG 532 (764)
T ss_pred ceeeccCchHhHHHHHHhcCCCCcEEEEecCCC-CccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccc
Confidence 886533222221122236788877655467776 899996 22 28999999999999999999999
Q ss_pred cCCCcceEEEEecccc
Q 008235 525 RHTVSGILHSFFTKDD 540 (573)
Q Consensus 525 R~g~~G~~i~~~~~~d 540 (573)
|-|.+|.+-.|++-+|
T Consensus 533 RQGDpGss~f~lSleD 548 (764)
T PRK12326 533 RQGDPGSSVFFVSLED 548 (764)
T ss_pred cCCCCCceeEEEEcch
Confidence 9999999999988655
No 109
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.80 E-value=5.6e-18 Score=191.40 Aligned_cols=316 Identities=12% Similarity=0.094 Sum_probs=191.3
Q ss_pred CCHHHHHHHHHHhcC---C-cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 203 VNSWGIEFWKCYSSA---K-DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 203 ~t~iQ~~aip~il~g---~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
..++|..++..+... . .+++.|||| +|||++.+++++..+.... ....+++++.|+|.++.++++.++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG-~GKT~asl~~a~~~~~~~~------~~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTG-YGKTEASLILALALLDEKI------KLKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCC-CChHHHHHHHHHHHhhccc------cccceEEEEccHHHHHHHHHHHHHh
Confidence 488999999888775 4 788899999 9999999999988776531 1477999999999999999999988
Q ss_pred hhcC-CcEEEEeCCCCCHHHHHHH-----h--------hcCCCcEEEeCHHHHHHHHHcCC-CC-C--CCccEEEEeCcc
Q 008235 279 LKAF-GIHTVSLHPGAAIDHQITG-----L--------RSCEPEFLVSTPERLLKLVSLKA-ID-V--SGVSLLVVDRLD 340 (573)
Q Consensus 279 l~~~-~i~~~~~~gg~~~~~~~~~-----l--------~~~~~~IlV~TP~rL~~~l~~~~-~~-l--~~l~~lViDEad 340 (573)
.... ++.....+|.......... + ...-..++++||-.+.-...... .. + =....+|+||+|
T Consensus 269 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 269 IFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred hhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 6333 2222213333222111000 0 00023455556654443211111 11 1 124689999999
Q ss_pred cccCc---chHHHHHHhc-CCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCcc--ccccceEEEEEEcCChhHHH
Q 008235 341 SLSKG---DTLSLIRQSI-SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA--SQSACIIQSVNVCASDEEKI 414 (573)
Q Consensus 341 ~ll~~---~~l~~Il~~l-~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~--~~~~~i~~~~~~~~~~~~k~ 414 (573)
.+-+. ..+..++..+ .-+..++++|||+|+...+....++.... .+....... .....+.+....+ .....
T Consensus 349 ~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~--~~~~~ 425 (733)
T COG1203 349 LYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGR-EVVENAKFCPKEDEPGLKRKERVD--VEDGP 425 (733)
T ss_pred hhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhccc-ceeccccccccccccccccccchh--hhhhh
Confidence 77652 2222222222 35678999999999998888888877654 222221100 0001111111111 11110
Q ss_pred -HHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCC-----CHHHHHHHHH---hcCCCCCeE
Q 008235 415 -LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC-----IVSHIKNSVE---ADGRKRPAV 485 (573)
Q Consensus 415 -~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~-----~~~~~l~~F~---~~g~~~~l~ 485 (573)
..+...+.... ..+.+++|.|||+..|.+++..|+..+.++. +.|+ +|.+.++.+. +.....+++
T Consensus 426 ~~~~~~~~~~~~-----~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~-LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvV 499 (733)
T COG1203 426 QEELIELISEEV-----KEGKKVLVIVNTVDRAIELYEKLKEKGPKVL-LLHSRFTLKDREEKERELKKLFKQNEGFIVV 499 (733)
T ss_pred hHhhhhcchhhh-----ccCCcEEEEEecHHHHHHHHHHHHhcCCCEE-EEecccchhhHHHHHHHHHHHHhccCCeEEE
Confidence 01112222222 2367999999999999999999999888555 4576 5555555441 223333333
Q ss_pred EEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCC--CcceEEEEeccc
Q 008235 486 SMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHT--VSGILHSFFTKD 539 (573)
Q Consensus 486 ~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g--~~G~~i~~~~~~ 539 (573)
+ |-+.. .|+||. ++++|- =+..+++.|||+||++|.| ..|.++.+....
T Consensus 500 a-TQVIE-agvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 500 A-TQVIE-AGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred E-eeEEE-EEeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 3 33442 499996 776654 3455899999999999999 578888776543
No 110
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.78 E-value=7.6e-18 Score=181.72 Aligned_cols=302 Identities=11% Similarity=0.025 Sum_probs=196.0
Q ss_pred CCCCHHHHHHHHHH----hcC-CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHH
Q 008235 201 LFVNSWGIEFWKCY----SSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (573)
Q Consensus 201 ~~~t~iQ~~aip~i----l~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~ 275 (573)
+.+..+|..||..+ ..| +-+|++..|| ||||... +.++.+|.... .-.++|+|+-++.|+.|.+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATG-TGKTrTA-iaii~rL~r~~-------~~KRVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATG-TGKTRTA-IAIIDRLIKSG-------WVKRVLFLADRNALVDQAYGA 234 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecC-CCcceeH-HHHHHHHHhcc-------hhheeeEEechHHHHHHHHHH
Confidence 34588999998654 456 3488999999 9999874 56777777653 345899999999999999999
Q ss_pred HhhhhcCCcEEEEe--CCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC-----CCCCCCccEEEEeCcccccCcchH
Q 008235 276 CKPLKAFGIHTVSL--HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK-----AIDVSGVSLLVVDRLDSLSKGDTL 348 (573)
Q Consensus 276 ~~~l~~~~i~~~~~--~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~-----~~~l~~l~~lViDEad~ll~~~~l 348 (573)
+..+-..+=....+ .++.. .++|.|+|-.++...+... .+....+++||||||||-. ...-
T Consensus 235 f~~~~P~~~~~n~i~~~~~~~-----------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi-~~~~ 302 (875)
T COG4096 235 FEDFLPFGTKMNKIEDKKGDT-----------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI-YSEW 302 (875)
T ss_pred HHHhCCCccceeeeecccCCc-----------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH-Hhhh
Confidence 98875543222222 22221 3799999999988877654 2445669999999999866 4444
Q ss_pred HHHHHhcCCCCcEEEEeccCCccHHHHHHHHh-cCCceEEEcCCC--------------------cccccc---------
Q 008235 349 SLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL-LGSINRLSLNQS--------------------VASQSA--------- 398 (573)
Q Consensus 349 ~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l-~~~~~~i~~~~~--------------------~~~~~~--------- 398 (573)
..|+.++..-.|.+ +||....+..-.-.|+ +.|+..+++... ......
T Consensus 303 ~~I~dYFdA~~~gL--TATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~ 380 (875)
T COG4096 303 SSILDYFDAATQGL--TATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQ 380 (875)
T ss_pred HHHHHHHHHHHHhh--ccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhh
Confidence 46666665433333 7776654333333333 333222221110 000000
Q ss_pred --ce---EEEEEEcC-----ChhHHHHHHHHHHHHHhccCCC-CCCCcEEEEecChhhHHHHHHHHHHCCCC----eeee
Q 008235 399 --CI---IQSVNVCA-----SDEEKILKGIQVLDHAYGDHFH-SEPLKVLYIVGKDSKFQNLVSTLKCKGYS----ISTG 463 (573)
Q Consensus 399 --~i---~~~~~~~~-----~~~~k~~~l~~~L~~~~~~~~~-~~~~k~lIF~~s~~~~~~l~~~L~~~g~~----~~~~ 463 (573)
.| .+.+...+ ........+...|..++..... ...++|||||.+..+|+.+...|...... ....
T Consensus 381 g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~ 460 (875)
T COG4096 381 GEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMK 460 (875)
T ss_pred ccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEE
Confidence 01 00111110 0012344566677777776221 22679999999999999999999875322 2222
Q ss_pred cCCCH---HHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccC
Q 008235 464 SNCIV---SHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARH 526 (573)
Q Consensus 464 ~~~~~---~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~ 526 (573)
+.|+- +..+..|..+.+...|++.+|... .|+|+|.|..+|.+..-+|...|.|++||+-|.
T Consensus 461 IT~d~~~~q~~Id~f~~ke~~P~IaitvdlL~-TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 461 ITGDAEQAQALIDNFIDKEKYPRIAITVDLLT-TGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred EeccchhhHHHHHHHHhcCCCCceEEehhhhh-cCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 33433 236888856566666666568774 799999999999999999999999999999886
No 111
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.77 E-value=8.2e-17 Score=180.18 Aligned_cols=318 Identities=8% Similarity=0.023 Sum_probs=181.5
Q ss_pred CCCHHHHHHHHHHh----c------CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHH
Q 008235 202 FVNSWGIEFWKCYS----S------AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAK 271 (573)
Q Consensus 202 ~~t~iQ~~aip~il----~------g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Q 271 (573)
.+.+.|..|+..+. . .+..+++.+|| ||||++.+.-+ ..+... ...+++|||||+.+|..|
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TG-sGKT~t~~~la-~~l~~~-------~~~~~vl~lvdR~~L~~Q 308 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQG-SGKTLTMLFAA-RKALEL-------LKNPKVFFVVDRRELDYQ 308 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecC-CCccHHHHHHH-HHHHhh-------cCCCeEEEEECcHHHHHH
Confidence 34778988887653 2 25689999999 99998865433 333321 146899999999999999
Q ss_pred HHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC--CCCCCCc-cEEEEeCcccccCcchH
Q 008235 272 VRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK--AIDVSGV-SLLVVDRLDSLSKGDTL 348 (573)
Q Consensus 272 i~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~--~~~l~~l-~~lViDEad~ll~~~~l 348 (573)
+.+.+..+... +..+..+.......+......|+|+|...|...+... .+....- -+||+||||+.. ...+
T Consensus 309 ~~~~f~~~~~~-----~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~-~~~~ 382 (667)
T TIGR00348 309 LMKEFQSLQKD-----CAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ-YGEL 382 (667)
T ss_pred HHHHHHhhCCC-----CCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc-chHH
Confidence 99999887421 1112223333334444434689999999987644321 1111111 289999999876 4455
Q ss_pred HHHHHhcCCCCcEEEEeccCCcc----HHHHHHHHhcCCceEEEcCCCccc-cccceEEEEEE----cCCh---------
Q 008235 349 SLIRQSISGKPHTVVFNDCLTYT----SVPAVQNLLLGSINRLSLNQSVAS-QSACIIQSVNV----CASD--------- 410 (573)
Q Consensus 349 ~~Il~~l~~~~q~l~~SAT~~~~----~~~~~~~~l~~~~~~i~~~~~~~~-~~~~i~~~~~~----~~~~--------- 410 (573)
..++...-++...++||||.-.. ........++.++..+.+...... ....+...... .+..
T Consensus 383 ~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~ 462 (667)
T TIGR00348 383 AKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEI 462 (667)
T ss_pred HHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHH
Confidence 55554333467899999997532 111111111233323333221000 00001100000 0000
Q ss_pred -----------------------------hHHHHHHH-HHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCC---
Q 008235 411 -----------------------------EEKILKGI-QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKG--- 457 (573)
Q Consensus 411 -----------------------------~~k~~~l~-~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g--- 457 (573)
+.....+. +++.++..... ....+++|||.++..|..++..|....
T Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~-~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 463 FELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKE-LFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhh-cccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 00011111 22223222111 124799999999999999999886652
Q ss_pred --CCeeeecCC--C-----------------------HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCC
Q 008235 458 --YSISTGSNC--I-----------------------VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFI 510 (573)
Q Consensus 458 --~~~~~~~~~--~-----------------------~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P 510 (573)
.....++.. + ..+.+++|...+...++++ +|.. ..|+|.|.+++++..-+-
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIV-vdml-lTGFDaP~l~tLyldKpl 619 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIV-VDML-LTGFDAPILNTLYLDKPL 619 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEE-Eccc-ccccCCCccceEEEeccc
Confidence 222222111 0 1256788832244455433 5777 479999999999888776
Q ss_pred CCHHHHHHHHhccccC-C--C-cceEEEEecc
Q 008235 511 ISMKNYVEILTSMARH-T--V-SGILHSFFTK 538 (573)
Q Consensus 511 ~s~~~YiqR~GR~gR~-g--~-~G~~i~~~~~ 538 (573)
++. .++|.+||+.|. . + .|..+-|+..
T Consensus 620 k~h-~LlQai~R~nR~~~~~K~~g~IvDy~g~ 650 (667)
T TIGR00348 620 KYH-GLLQAIARTNRIDGKDKTFGLIVDYRGL 650 (667)
T ss_pred ccc-HHHHHHHHhccccCCCCCCEEEEECcCh
Confidence 664 589999999993 3 2 3666666653
No 112
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=1.9e-17 Score=170.11 Aligned_cols=350 Identities=9% Similarity=-0.046 Sum_probs=232.4
Q ss_pred HHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEE
Q 008235 180 ILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFL 259 (573)
Q Consensus 180 ~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~ 259 (573)
..+.+.+...+..+....- ..+|..++..+.+|+++++...|. +||.++|.+..+..+...+ ....
T Consensus 269 ~~~~E~~~~~~~~~~~E~~-----~~~~~~~~~~~~~G~~~~~~~~~~-~GK~~~~~~~s~~~~~~~~--------~s~~ 334 (1034)
T KOG4150|consen 269 SDFWESIRSLLNKNTGESG-----IAISLELLKFASEGRADGGNEARQ-AGKGTCPTSGSRKFQTLCH--------ATNS 334 (1034)
T ss_pred hhHHHHHHHHHhcccccch-----hhhhHHHHhhhhhcccccccchhh-cCCccCcccchhhhhhcCc--------ccce
Confidence 3356666666666655555 789999999999999999999999 9999999988877665543 3356
Q ss_pred EEEcccHHHHHHHHHHHhhh----hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC----CCCCCc
Q 008235 260 LFLVSSQEKAAKVRSVCKPL----KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA----IDVSGV 331 (573)
Q Consensus 260 Lil~PtreLa~Qi~~~~~~l----~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~----~~l~~l 331 (573)
+++.||.||++...+.+.-. ....--++-.+.|.+........+. +.++|++.|......+--+. ..+-.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~-~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~ 413 (1034)
T KOG4150|consen 335 LLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRI-GLNTLYSHQAEAISAALAKSLCYNVPVFEE 413 (1034)
T ss_pred ecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhc-CcceeecCHHHHHHHHhhhccccccHHHHH
Confidence 89999999987554433221 1122234445666665555455555 89999999988765543333 234457
Q ss_pred cEEEEeCcccccC------cchHHHHHHhc-----CCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccce
Q 008235 332 SLLVVDRLDSLSK------GDTLSLIRQSI-----SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACI 400 (573)
Q Consensus 332 ~~lViDEad~ll~------~~~l~~Il~~l-----~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i 400 (573)
.++++||+|..+. ..+++.++..+ +.+.|++-.|||+...++-....+--+-+..|..+.+. ..-
T Consensus 414 ~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSP----s~~ 489 (1034)
T KOG4150|consen 414 LCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSP----SSE 489 (1034)
T ss_pred HHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCC----Ccc
Confidence 7899999998776 56677777666 46789999999998876654444433444455555432 223
Q ss_pred EEEEEEcCC-----h---hHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCee--------e--
Q 008235 401 IQSVNVCAS-----D---EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------T-- 462 (573)
Q Consensus 401 ~~~~~~~~~-----~---~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~--------~-- 462 (573)
.+.++.-++ + +.+..-...++.+++.. +-++|.||.+++-|+.+....+..-+... .
T Consensus 490 K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~-----~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYR 564 (1034)
T KOG4150|consen 490 KLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQH-----GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYR 564 (1034)
T ss_pred ceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHc-----CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhc
Confidence 445544332 1 23344444555555554 45999999999999987665544311110 1
Q ss_pred --ecCCCHHHHHHHHHhcCCCCCeEEEEeccccC-CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEe--c
Q 008235 463 --GSNCIVSHIKNSVEADGRKRPAVSMIDKDHIS-TAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFF--T 537 (573)
Q Consensus 463 --~~~~~~~~~l~~F~~~g~~~~l~~lvd~~s~r-GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~--~ 537 (573)
.+..+|..+.++. -.|+...+++ +..+. ||||.+.+.|++.++|.|+..+.|+.||+||.++...++.+. .
T Consensus 565 GGY~A~DRRKIE~~~-F~G~L~giIa---TNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~ 640 (1034)
T KOG4150|consen 565 GGYIAEDRRKIESDL-FGGKLCGIIA---TNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLG 640 (1034)
T ss_pred CccchhhHHHHHHHh-hCCeeeEEEe---cchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEecc
Confidence 1223555555444 3554444333 22123 999999999999999999999999999999999988776654 4
Q ss_pred cccHHHHHHHHHHHHHcCCC
Q 008235 538 KDDAAHAGQMIEILEQCGQV 557 (573)
Q Consensus 538 ~~d~~~~~~l~~~l~~~~~~ 557 (573)
|-|..++..-..++...+.+
T Consensus 641 PVDQ~Y~~HP~~l~~~pN~E 660 (1034)
T KOG4150|consen 641 PVDQYYMSHPDKLFGSPNEE 660 (1034)
T ss_pred chhhHhhcCcHHHhCCCcce
Confidence 66777766655555544443
No 113
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.76 E-value=2.9e-16 Score=179.26 Aligned_cols=314 Identities=10% Similarity=0.012 Sum_probs=196.4
Q ss_pred CCHHHHHHHHHHh----cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 203 VNSWGIEFWKCYS----SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 203 ~t~iQ~~aip~il----~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
+.|+|.+++.-++ +|.+.|++-..| .|||+.. +.++.++..... ....+|||||. .|..|+.+.+..
T Consensus 170 Lr~YQleGlnWLi~l~~~g~gGILADEMG-LGKTlQa-IalL~~L~~~~~------~~gp~LIVvP~-SlL~nW~~Ei~k 240 (1033)
T PLN03142 170 MRDYQLAGLNWLIRLYENGINGILADEMG-LGKTLQT-ISLLGYLHEYRG------ITGPHMVVAPK-STLGNWMNEIRR 240 (1033)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEeCCC-ccHHHHH-HHHHHHHHHhcC------CCCCEEEEeCh-HHHHHHHHHHHH
Confidence 4889999887664 578889999999 9999874 344444443211 12357999996 567889999988
Q ss_pred hhcCCcEEEEeCCCCCHHHHH--HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-cchHHHHHHhc
Q 008235 279 LKAFGIHTVSLHPGAAIDHQI--TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSI 355 (573)
Q Consensus 279 l~~~~i~~~~~~gg~~~~~~~--~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l 355 (573)
+.. .++++.++|........ ..+..+.++|+|+|.+.+..... .+.--+..+|||||||++-. ...+..++..+
T Consensus 241 w~p-~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L 317 (1033)
T PLN03142 241 FCP-VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNENSLLSKTMRLF 317 (1033)
T ss_pred HCC-CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHHHHHHHHHHHh
Confidence 753 56677777754332221 12223468999999988754322 12223467999999999887 55566666666
Q ss_pred CCCCcEEEEeccCCcc-HHHHHHH--Hhc---------------------------------CCceEEEc-CCC-ccccc
Q 008235 356 SGKPHTVVFNDCLTYT-SVPAVQN--LLL---------------------------------GSINRLSL-NQS-VASQS 397 (573)
Q Consensus 356 ~~~~q~l~~SAT~~~~-~~~~~~~--~l~---------------------------------~~~~~i~~-~~~-~~~~~ 397 (573)
.. ...+++|+|.-.. ..++... |+. .|+ .+.- ... ....+
T Consensus 318 ~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf-~LRR~KsdV~~~LP 395 (1033)
T PLN03142 318 ST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPF-LLRRLKSDVEKGLP 395 (1033)
T ss_pred hc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHH-HhhhhHHHHhhhCC
Confidence 54 3457889995321 2221110 000 000 0000 000 00000
Q ss_pred cceEEEEEEcC-C-------------------------------------------------------------hhHHHH
Q 008235 398 ACIIQSVNVCA-S-------------------------------------------------------------DEEKIL 415 (573)
Q Consensus 398 ~~i~~~~~~~~-~-------------------------------------------------------------~~~k~~ 415 (573)
+.. ..++.|. + ...|+.
T Consensus 396 pK~-e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~ 474 (1033)
T PLN03142 396 PKK-ETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474 (1033)
T ss_pred Cce-eEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHH
Confidence 111 1111111 0 123444
Q ss_pred HHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCC-----CHHHHHHHHHhcCCCCCeEEEE--
Q 008235 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC-----IVSHIKNSVEADGRKRPAVSMI-- 488 (573)
Q Consensus 416 ~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~-----~~~~~l~~F~~~g~~~~l~~lv-- 488 (573)
.|..+|..+... +.++|||+........|..+|...|+....+ +| +|.++++.| ........+.|+
T Consensus 475 lLdkLL~~Lk~~-----g~KVLIFSQft~~LdiLed~L~~~g~~y~rI-dGsts~~eRq~~Id~F-n~~~s~~~VfLLST 547 (1033)
T PLN03142 475 LLDKLLPKLKER-----DSRVLIFSQMTRLLDILEDYLMYRGYQYCRI-DGNTGGEDRDASIDAF-NKPGSEKFVFLLST 547 (1033)
T ss_pred HHHHHHHHHHhc-----CCeEEeehhHHHHHHHHHHHHHHcCCcEEEE-CCCCCHHHHHHHHHHh-ccccCCceEEEEec
Confidence 455555554332 4699999999999999999999999998864 65 466789999 443332222233
Q ss_pred eccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcce--EEEEeccc
Q 008235 489 DKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGI--LHSFFTKD 539 (573)
Q Consensus 489 d~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~--~i~~~~~~ 539 (573)
++. ..|||+..+++||+||+|.++..+.|++||+-|-|+... ++.|++..
T Consensus 548 rAG-GlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 548 RAG-GLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred ccc-ccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 333 139999999999999999999999999999999997654 45556654
No 114
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.76 E-value=7.8e-17 Score=179.63 Aligned_cols=302 Identities=11% Similarity=0.044 Sum_probs=194.3
Q ss_pred HHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh-hhc-CC
Q 008235 206 WGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LKA-FG 283 (573)
Q Consensus 206 iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~-l~~-~~ 283 (573)
...+.+..+.+..=+++++||| ||||...-.-+++... . .+..+.+.-|.|-=|.-+...+.. +.. .|
T Consensus 54 ~~~~i~~ai~~~~vvii~getG-sGKTTqlP~~lle~g~----~-----~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 54 VRDEILKAIEQNQVVIIVGETG-SGKTTQLPQFLLEEGL----G-----IAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred HHHHHHHHHHhCCEEEEeCCCC-CChHHHHHHHHHhhhc----c-----cCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 3334444555556788889999 9999763333332222 1 244667777887555555544433 422 23
Q ss_pred cEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCccc-ccC----cchHHHHHHhcCCC
Q 008235 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSK----GDTLSLIRQSISGK 358 (573)
Q Consensus 284 i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~-ll~----~~~l~~Il~~l~~~ 358 (573)
=.|+.-+-..+. ... ...|-+.|.|.|+..+..... |+.+++|||||||. -++ ...+..++...+++
T Consensus 124 ~~VGY~iRfe~~------~s~-~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~D 195 (845)
T COG1643 124 ETVGYSIRFESK------VSP-RTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDD 195 (845)
T ss_pred ceeeEEEEeecc------CCC-CceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCC
Confidence 333332221111 111 467999999999999887654 89999999999995 223 55666677777778
Q ss_pred CcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhH-HHHHHHHHHHHHhccCCCCCCCcEE
Q 008235 359 PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEE-KILKGIQVLDHAYGDHFHSEPLKVL 437 (573)
Q Consensus 359 ~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~-k~~~l~~~L~~~~~~~~~~~~~k~l 437 (573)
..++++|||+.. +.+...|-..|+ +.+.... ..|+-.|......+. -...+...+...+... .+-+|
T Consensus 196 LKiIimSATld~--~rfs~~f~~apv--i~i~GR~----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~----~GdIL 263 (845)
T COG1643 196 LKLIIMSATLDA--ERFSAYFGNAPV--IEIEGRT----YPVEIRYLPEAEADYILLDAIVAAVDIHLREG----SGSIL 263 (845)
T ss_pred ceEEEEecccCH--HHHHHHcCCCCE--EEecCCc----cceEEEecCCCCcchhHHHHHHHHHHHhccCC----CCCEE
Confidence 999999999984 555555555664 5554321 134545533322233 3445555565555544 48999
Q ss_pred EEecChhhHHHHHHHHHH--C--CCCeeeecCCCHHH--HHHHHHh--cCCCCCeEEEEeccccCCCccCCCCEEEeCCC
Q 008235 438 YIVGKDSKFQNLVSTLKC--K--GYSISTGSNCIVSH--IKNSVEA--DGRKRPAVSMIDKDHISTAELEEYEVVIVPDF 509 (573)
Q Consensus 438 IF~~s~~~~~~l~~~L~~--~--g~~~~~~~~~~~~~--~l~~F~~--~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~ 509 (573)
||.+...+.+.+++.|.. . .+.+.. .||.++. ..+-|.. .++.+++++ |+++. .+|-||+|.+||.-++
T Consensus 264 vFLpG~~EI~~~~~~L~~~~l~~~~~i~P-Ly~~L~~~eQ~rvF~p~~~~~RKVVlA-TNIAE-TSLTI~gIr~VIDsG~ 340 (845)
T COG1643 264 VFLPGQREIERTAEWLEKAELGDDLEILP-LYGALSAEEQVRVFEPAPGGKRKVVLA-TNIAE-TSLTIPGIRYVIDSGL 340 (845)
T ss_pred EECCcHHHHHHHHHHHHhccccCCcEEee-ccccCCHHHHHhhcCCCCCCcceEEEE-ccccc-cceeeCCeEEEecCCc
Confidence 999999999999999987 2 344555 4675432 3344522 232335444 56663 5999999999997554
Q ss_pred ------------------CCCHHHHHHHHhccccCCCcceEEEEeccccH
Q 008235 510 ------------------IISMKNYVEILTSMARHTVSGILHSFFTKDDA 541 (573)
Q Consensus 510 ------------------P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~ 541 (573)
|-|-.+..||.||+||-+ .|.||-+|+.++.
T Consensus 341 ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~ 389 (845)
T COG1643 341 AKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDF 389 (845)
T ss_pred ccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHH
Confidence 345678899999999965 9999999998544
No 115
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.74 E-value=1.8e-16 Score=162.89 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=101.0
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccC-CCccCCCCEEEe
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHIS-TAELEEYEVVIV 506 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~r-GlDip~v~~VI~ 506 (573)
+.++||-+-|++-|+.|.++|...|+.+.++ |++ |.++++.. +.|...+++. |+.. | |||+|.|.+|..
T Consensus 446 ~eRvLVTtLTKkmAEdLT~Yl~e~gikv~Yl-HSdidTlER~eIirdL-R~G~~DvLVG-INLL--REGLDiPEVsLVAI 520 (663)
T COG0556 446 NERVLVTTLTKKMAEDLTEYLKELGIKVRYL-HSDIDTLERVEIIRDL-RLGEFDVLVG-INLL--REGLDLPEVSLVAI 520 (663)
T ss_pred CCeEEEEeehHHHHHHHHHHHHhcCceEEee-eccchHHHHHHHHHHH-hcCCccEEEe-ehhh--hccCCCcceeEEEE
Confidence 5699999999999999999999999999976 664 55689999 9999999777 4454 5 999999999998
Q ss_pred CC-----CCCCHHHHHHHHhccccCCCcceEEEEeccc---------cHHHHHHHHHHHHHcCCCCCHHHHH
Q 008235 507 PD-----FIISMKNYVEILTSMARHTVSGILHSFFTKD---------DAAHAGQMIEILEQCGQVVPDALRD 564 (573)
Q Consensus 507 ~d-----~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~---------d~~~~~~l~~~l~~~~~~vp~~l~~ 564 (573)
+| +.+|-.+.||-+||++| +..|.+|++.+.- |...-+.+...+++.+.-+|..+.+
T Consensus 521 lDADKeGFLRse~SLIQtIGRAAR-N~~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K 591 (663)
T COG0556 521 LDADKEGFLRSERSLIQTIGRAAR-NVNGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIKK 591 (663)
T ss_pred eecCccccccccchHHHHHHHHhh-ccCCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhh
Confidence 87 57899999999999999 5689999876532 2233344555566666667776543
No 116
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.73 E-value=5.3e-16 Score=170.65 Aligned_cols=305 Identities=14% Similarity=0.090 Sum_probs=195.3
Q ss_pred CCCCHHHHHHHHHHhcC----CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHH
Q 008235 201 LFVNSWGIEFWKCYSSA----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~ 276 (573)
..+++-|+.++..+... .-.++...|| ||||.+|+ .++...+. .|..+|||+|-..|..|+...+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTG-SGKTEvYl-~~i~~~L~---------~GkqvLvLVPEI~Ltpq~~~rf 265 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTG-SGKTEVYL-EAIAKVLA---------QGKQVLVLVPEIALTPQLLARF 265 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCC-CcHHHHHH-HHHHHHHH---------cCCEEEEEeccccchHHHHHHH
Confidence 34588899999988665 6788899999 99999985 45555554 3779999999999999999888
Q ss_pred hhhhcCCcEEEEeCCCCCHH---HHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC------cch
Q 008235 277 KPLKAFGIHTVSLHPGAAID---HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK------GDT 347 (573)
Q Consensus 277 ~~l~~~~i~~~~~~gg~~~~---~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~------~~~ 347 (573)
+.. +|.+++.+++|.+.. ..|....+|...|+|||--.| ...+.++.++||||=|.-.- ...
T Consensus 266 ~~r--Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYh 336 (730)
T COG1198 266 KAR--FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYH 336 (730)
T ss_pred HHH--hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcC
Confidence 774 368888888887743 445666777899999994333 24589999999999996433 222
Q ss_pred HHHHH--HhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHH-----HHHHHH
Q 008235 348 LSLIR--QSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI-----LKGIQV 420 (573)
Q Consensus 348 l~~Il--~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~-----~~l~~~ 420 (573)
.+.+- ..-..++++++-|||.+ ++.+..- ....+..+.+......+ .-....++-...+.... ..|++.
T Consensus 337 ARdvA~~Ra~~~~~pvvLgSATPS--LES~~~~-~~g~y~~~~L~~R~~~a-~~p~v~iiDmr~e~~~~~~~lS~~Ll~~ 412 (730)
T COG1198 337 ARDVAVLRAKKENAPVVLGSATPS--LESYANA-ESGKYKLLRLTNRAGRA-RLPRVEIIDMRKEPLETGRSLSPALLEA 412 (730)
T ss_pred HHHHHHHHHHHhCCCEEEecCCCC--HHHHHhh-hcCceEEEEcccccccc-CCCcceEEeccccccccCccCCHHHHHH
Confidence 22222 12235789999999966 4444433 23333355554432211 11122233222222222 456677
Q ss_pred HHHHhccCCCCCCCcEEEEecChhhHHHH---------------------------------------------------
Q 008235 421 LDHAYGDHFHSEPLKVLYIVGKDSKFQNL--------------------------------------------------- 449 (573)
Q Consensus 421 L~~~~~~~~~~~~~k~lIF~~s~~~~~~l--------------------------------------------------- 449 (573)
+++.+.. +.++|+|.|.+.-+-.+
T Consensus 413 i~~~l~~-----geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~ 487 (730)
T COG1198 413 IRKTLER-----GEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLR 487 (730)
T ss_pred HHHHHhc-----CCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeE
Confidence 7776665 45999999887433222
Q ss_pred ---------HHHHHHC--CCCeeeec------CCCHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCC---
Q 008235 450 ---------VSTLKCK--GYSISTGS------NCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDF--- 509 (573)
Q Consensus 450 ---------~~~L~~~--g~~~~~~~------~~~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~--- 509 (573)
.+.|... +.++..+. .+.....+..| .+|+..+|+. |-.. +.|.|+|+|++|...|.
T Consensus 488 ~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~-~~ge~dILiG-TQmi-aKG~~fp~vtLVgvl~aD~~ 564 (730)
T COG1198 488 AVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQF-ANGEADILIG-TQMI-AKGHDFPNVTLVGVLDADTG 564 (730)
T ss_pred EecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHH-hCCCCCeeec-chhh-hcCCCcccceEEEEEechhh
Confidence 1111111 01111000 00123469999 9999999766 2222 45999999999865443
Q ss_pred ---C--C----CHHHHHHHHhccccCCCcceEEEEec
Q 008235 510 ---I--I----SMKNYVEILTSMARHTVSGILHSFFT 537 (573)
Q Consensus 510 ---P--~----s~~~YiqR~GR~gR~g~~G~~i~~~~ 537 (573)
| + ....|.|-+||+||++..|.+++-..
T Consensus 565 L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~ 601 (730)
T COG1198 565 LGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTY 601 (730)
T ss_pred hcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeC
Confidence 2 2 34567888999999999988876644
No 117
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=5.6e-15 Score=163.81 Aligned_cols=322 Identities=11% Similarity=0.043 Sum_probs=209.7
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~ 282 (573)
+++|...--.+..|+ |+...|| +|||++..+|++-..+ .|..+-|++||--||.|=++++..+ ..+
T Consensus 84 ydVQliGg~~Lh~G~--iaEM~TG-EGKTLvA~l~a~l~al----------~G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 84 FDVQLIGGMTLHEGK--IAEMRTG-EGKTLVGTLAVYLNAL----------SGKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred chhHHHhhhHhccCc--cccccCC-CCChHHHHHHHHHHHH----------cCCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 889988766666554 7788999 9999999999986554 4778999999999999999999997 667
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcCC------CCCCCccEEEEeCcccccC-----------
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLKA------IDVSGVSLLVVDRLDSLSK----------- 344 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~~------~~l~~l~~lViDEad~ll~----------- 344 (573)
|+++.++.++.+........ .+||++||..-+ .|+|+.+. ...+.+.+.||||+|.+|=
T Consensus 151 Gl~v~~i~~~~~~~err~~Y---~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg 227 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAY---AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISG 227 (913)
T ss_pred CCEEEEECCCCCHHHHHHHh---cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecC
Confidence 99999999887755433332 489999999876 44444331 2247899999999998752
Q ss_pred --------cchHHHHHHhcCC-------------------CCcEEE----------------------------------
Q 008235 345 --------GDTLSLIRQSISG-------------------KPHTVV---------------------------------- 363 (573)
Q Consensus 345 --------~~~l~~Il~~l~~-------------------~~q~l~---------------------------------- 363 (573)
+..+..+...+.. ....+.
T Consensus 228 ~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~ 307 (913)
T PRK13103 228 QAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLL 307 (913)
T ss_pred CCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHH
Confidence 1122222222200 011111
Q ss_pred --------------------------------------------------------------------------------
Q 008235 364 -------------------------------------------------------------------------------- 363 (573)
Q Consensus 364 -------------------------------------------------------------------------------- 363 (573)
T Consensus 308 ~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL 387 (913)
T PRK13103 308 THVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKL 387 (913)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchh
Confidence
Q ss_pred --EeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEec
Q 008235 364 --FNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVG 441 (573)
Q Consensus 364 --~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~ 441 (573)
||.|......++...| +-+ ++.+.............. ++. ....|+..+.+-+...... +.|+||-+.
T Consensus 388 sGMTGTa~te~~Ef~~iY-~l~--Vv~IPTnkP~~R~D~~d~-vy~-t~~eK~~Ai~~ei~~~~~~-----GrPVLVGT~ 457 (913)
T PRK13103 388 SGMTGTADTEAFEFRQIY-GLD--VVVIPPNKPLARKDFNDL-VYL-TAEEKYAAIITDIKECMAL-----GRPVLVGTA 457 (913)
T ss_pred ccCCCCCHHHHHHHHHHh-CCC--EEECCCCCCcccccCCCe-EEc-CHHHHHHHHHHHHHHHHhC-----CCCEEEEeC
Confidence 1111111111111100 001 111111111111111111 223 3677888888888776554 469999999
Q ss_pred ChhhHHHHHHHHHHCCCCeeeec---CCCHHHHHHHHHhcCCCCCeEEEEeccccCCCccC-------------------
Q 008235 442 KDSKFQNLVSTLKCKGYSISTGS---NCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELE------------------- 499 (573)
Q Consensus 442 s~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip------------------- 499 (573)
|+...+.|+.+|...|++...+. |.+-.+++. +.|+.+.+..-|+.+. ||.||.
T Consensus 458 SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAG-RGTDIkLg~n~~~~~~~~~~~~~~~ 533 (913)
T PRK13103 458 TIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAG-RGTDILLGGNWEVEVAALENPTPEQ 533 (913)
T ss_pred CHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCC-CCCCEecCCchHHHHHhhhhhhHHH
Confidence 99999999999999999876542 221122332 5787777655467886 899994
Q ss_pred -------------CC-----CEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHH----HHHHHHHHHHcC
Q 008235 500 -------------EY-----EVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAH----AGQMIEILEQCG 555 (573)
Q Consensus 500 -------------~v-----~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~----~~~l~~~l~~~~ 555 (573)
.| =|||--..|.|..-=-|=.||+||-|.+|.+-.|++-+|.-+ -..+.+++...+
T Consensus 534 ~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lmr~fg~~~~~~~~~~~~ 611 (913)
T PRK13103 534 IAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMRIFASDRVKNFMKALG 611 (913)
T ss_pred HHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHhhCcHHHHHHHHHcC
Confidence 22 278988899998888999999999999999999998654321 224555555443
No 118
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.73 E-value=2.2e-15 Score=171.58 Aligned_cols=307 Identities=12% Similarity=0.089 Sum_probs=186.0
Q ss_pred CHHHHHH---HH-HHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHH-HHHHhh
Q 008235 204 NSWGIEF---WK-CYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV-RSVCKP 278 (573)
Q Consensus 204 t~iQ~~a---ip-~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi-~~~~~~ 278 (573)
.+-|.+- +. .+..+.++++.|+|| ||||++|++|++... .+.++||++||++|+.|+ .+.+..
T Consensus 247 R~~Q~~ma~~V~~~l~~~~~~~~eA~tG-tGKT~ayllp~l~~~-----------~~~~vvI~t~T~~Lq~Ql~~~~i~~ 314 (820)
T PRK07246 247 RPKQESFAKLVGEDFHDGPASFIEAQTG-IGKTYGYLLPLLAQS-----------DQRQIIVSVPTKILQDQIMAEEVKA 314 (820)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEECCCC-CcHHHHHHHHHHHhc-----------CCCcEEEEeCcHHHHHHHHHHHHHH
Confidence 8889883 33 344568899999999 999999999988643 256899999999999999 467777
Q ss_pred hhc-CCcEEEEeCCCCCHH---H--H------------------------------------------HHHh--------
Q 008235 279 LKA-FGIHTVSLHPGAAID---H--Q------------------------------------------ITGL-------- 302 (573)
Q Consensus 279 l~~-~~i~~~~~~gg~~~~---~--~------------------------------------------~~~l-------- 302 (573)
|.. +++++.++.||.++- . + +..+
T Consensus 315 l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~ 394 (820)
T PRK07246 315 IQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQ 394 (820)
T ss_pred HHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCC
Confidence 743 577777777764320 0 0 0000
Q ss_pred ---------------hcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC------cch---------H----
Q 008235 303 ---------------RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK------GDT---------L---- 348 (573)
Q Consensus 303 ---------------~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~------~~~---------l---- 348 (573)
+....||||+.-.-|+..+.... .+...++|||||||++.+ ... +
T Consensus 395 ~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (820)
T PRK07246 395 SSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKAL 473 (820)
T ss_pred CCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHH
Confidence 00146899998887776664433 256789999999998866 000 0
Q ss_pred ---------------------------------------HH-------H--------HHhc-----------C-------
Q 008235 349 ---------------------------------------SL-------I--------RQSI-----------S------- 356 (573)
Q Consensus 349 ---------------------------------------~~-------I--------l~~l-----------~------- 356 (573)
.. + ...+ .
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~ 553 (820)
T PRK07246 474 SGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRV 553 (820)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcce
Confidence 00 0 0000 0
Q ss_pred ------------------CCCcEEEEeccCC--ccHHHHHHHHhcCC-ceEEEcCCCccccccceEEEEEEc---C----
Q 008235 357 ------------------GKPHTVVFNDCLT--YTSVPAVQNLLLGS-INRLSLNQSVASQSACIIQSVNVC---A---- 408 (573)
Q Consensus 357 ------------------~~~q~l~~SAT~~--~~~~~~~~~~l~~~-~~~i~~~~~~~~~~~~i~~~~~~~---~---- 408 (573)
....++++|||++ +... +. ..++-+ .....+.. .... .+.++.. +
T Consensus 554 ~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~-~~lGl~~~~~~~~~~----~~~~-~~~~~i~~~~p~~~~ 626 (820)
T PRK07246 554 TYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LA-DLLGFEEYLFHKIEK----DKKQ-DQLVVVDQDMPLVTE 626 (820)
T ss_pred eEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HH-HHcCCCccceecCCC----ChHH-ccEEEeCCCCCCCCC
Confidence 0134678889886 2222 32 222211 11111110 0010 1111111 1
Q ss_pred -ChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeee-cCCCHHHHHHHHHhcCCCCCeEE
Q 008235 409 -SDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTG-SNCIVSHIKNSVEADGRKRPAVS 486 (573)
Q Consensus 409 -~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~l~~F~~~g~~~~l~~ 486 (573)
+.+.-...+.+.|..+.. . .+++||+++|.+..+.++..|....+++..- .++.+.+.+++| +.+...+|+.
T Consensus 627 ~~~~~~~~~~~~~i~~~~~--~---~g~~LVLFtS~~~l~~v~~~l~~~~~~~l~Qg~~~~~~~l~~~F-~~~~~~vLlG 700 (820)
T PRK07246 627 TSDEVYAEEIAKRLEELKQ--L---QQPILVLFNSKKHLLAVSDLLDQWQVSHLAQEKNGTAYNIKKRF-DRGEQQILLG 700 (820)
T ss_pred CChHHHHHHHHHHHHHHHh--c---CCCEEEEECcHHHHHHHHHHHhhcCCcEEEeCCCccHHHHHHHH-HcCCCeEEEe
Confidence 123344466666766552 2 5799999999999999999997665555321 124466789999 7777777655
Q ss_pred EEeccccCCCccCC--CCEEEeCCCCC----C--------------------------HHHHHHHHhccccCCC-cceEE
Q 008235 487 MIDKDHISTAELEE--YEVVIVPDFII----S--------------------------MKNYVEILTSMARHTV-SGILH 533 (573)
Q Consensus 487 lvd~~s~rGlDip~--v~~VI~~d~P~----s--------------------------~~~YiqR~GR~gR~g~-~G~~i 533 (573)
++.. ..|+|+|+ ...||...+|. + +..+.|-+||.=|... .|. +
T Consensus 701 -~~sF-wEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gv-v 777 (820)
T PRK07246 701 -LGSF-WEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSA-V 777 (820)
T ss_pred -cchh-hCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEE-E
Confidence 2333 24999973 55566666552 2 1234577899988775 565 4
Q ss_pred EEeccc
Q 008235 534 SFFTKD 539 (573)
Q Consensus 534 ~~~~~~ 539 (573)
+++++.
T Consensus 778 ~ilD~R 783 (820)
T PRK07246 778 LILDRR 783 (820)
T ss_pred EEECCc
Confidence 455554
No 119
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=1.7e-14 Score=158.31 Aligned_cols=323 Identities=9% Similarity=0.006 Sum_probs=209.8
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~ 282 (573)
+++|.-.--.+..|+ |+...|| =||||+..+|+.-..+ .|..+-|++..--||..=.+++..+ ..+
T Consensus 80 ydVQliGglvLh~G~--IAEMkTG-EGKTLvAtLpayLnAL----------~GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 80 YDVQIIGGIILDLGS--VAEMKTG-EGKTITSIAPVYLNAL----------TGKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred CchHHHHHHHHhcCC--eeeecCC-CCccHHHHHHHHHHHh----------cCCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 999999887777775 7889999 9999999999874433 4667888899999998777777775 557
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcCC------CCCCCccEEEEeCcccccC-----------
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLKA------IDVSGVSLLVVDRLDSLSK----------- 344 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~~------~~l~~l~~lViDEad~ll~----------- 344 (573)
|++++++..+.+....... +.+||+++|..-| .|+|+.+. ...+.+.+.||||+|.+|=
T Consensus 147 GLsvG~i~~~~~~~~rr~a---Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg 223 (925)
T PRK12903 147 GLSVGINKANMDPNLKREA---YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISG 223 (925)
T ss_pred CCceeeeCCCCChHHHHHh---ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccC
Confidence 9999999887765543222 3689999998765 45555432 2357789999999997652
Q ss_pred --------cchHHHHHHhcCC-------CCcEE-----------------------------------------------
Q 008235 345 --------GDTLSLIRQSISG-------KPHTV----------------------------------------------- 362 (573)
Q Consensus 345 --------~~~l~~Il~~l~~-------~~q~l----------------------------------------------- 362 (573)
+..+..+...+.. ....+
T Consensus 224 ~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dY 303 (925)
T PRK12903 224 GQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEY 303 (925)
T ss_pred CCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCce
Confidence 1122222222211 01111
Q ss_pred --------------------------------------------------------------EEeccCCccHHHHHHHHh
Q 008235 363 --------------------------------------------------------------VFNDCLTYTSVPAVQNLL 380 (573)
Q Consensus 363 --------------------------------------------------------------~~SAT~~~~~~~~~~~~l 380 (573)
+||.|......++...|
T Consensus 304 iV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY- 382 (925)
T PRK12903 304 IVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIY- 382 (925)
T ss_pred EEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHh-
Confidence 12222211111111111
Q ss_pred cCCceEEEcCCCccccccceEEE-EEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCC
Q 008235 381 LGSINRLSLNQSVASQSACIIQS-VNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (573)
Q Consensus 381 ~~~~~~i~~~~~~~~~~~~i~~~-~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~ 459 (573)
+-. ++.+... .+.....+. .++. ....|+..+..-+...... +.|+||.|.|+..++.|+..|...|++
T Consensus 383 ~l~--Vv~IPTn--kP~~R~D~~d~iy~-t~~~K~~Aii~ei~~~~~~-----gqPVLVgT~SIe~SE~ls~~L~~~gi~ 452 (925)
T PRK12903 383 NMR--VNVVPTN--KPVIRKDEPDSIFG-TKHAKWKAVVKEVKRVHKK-----GQPILIGTAQVEDSETLHELLLEANIP 452 (925)
T ss_pred CCC--EEECCCC--CCeeeeeCCCcEEE-cHHHHHHHHHHHHHHHHhc-----CCCEEEEeCcHHHHHHHHHHHHHCCCC
Confidence 101 1222211 111111111 2233 3577888887777766544 569999999999999999999999999
Q ss_pred eeeecCCCHHH-HHHHHHhcCCCCCeEEEEeccccCCCccCCCC--------EEEeCCCCCCHHHHHHHHhccccCCCcc
Q 008235 460 ISTGSNCIVSH-IKNSVEADGRKRPAVSMIDKDHISTAELEEYE--------VVIVPDFIISMKNYVEILTSMARHTVSG 530 (573)
Q Consensus 460 ~~~~~~~~~~~-~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~--------~VI~~d~P~s~~~YiqR~GR~gR~g~~G 530 (573)
..++ ++...+ --+-..+.|+.+.+..-|+.+. ||.||.=-. |||....|.|..-=-|-.||+||-|.+|
T Consensus 453 h~vL-NAk~~e~EA~IIa~AG~~GaVTIATNMAG-RGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpG 530 (925)
T PRK12903 453 HTVL-NAKQNAREAEIIAKAGQKGAITIATNMAG-RGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVG 530 (925)
T ss_pred ceee-cccchhhHHHHHHhCCCCCeEEEeccccc-CCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCC
Confidence 8865 332211 1111236788777655467775 899997322 8999999999988889999999999999
Q ss_pred eEEEEeccccHHH--H---HHHHHHHHHcC
Q 008235 531 ILHSFFTKDDAAH--A---GQMIEILEQCG 555 (573)
Q Consensus 531 ~~i~~~~~~d~~~--~---~~l~~~l~~~~ 555 (573)
.+-.|++-.|.-+ + ..+..++...+
T Consensus 531 ss~f~lSLeD~L~r~f~~~~ri~~~~~~l~ 560 (925)
T PRK12903 531 ESRFFISLDDQLFRRFSNFDKIKEAFKKLG 560 (925)
T ss_pred cceEEEecchHHHHHhCCHHHHHHHHHhcC
Confidence 9999988655322 1 34555555544
No 120
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.67 E-value=1.1e-13 Score=151.37 Aligned_cols=73 Identities=10% Similarity=-0.014 Sum_probs=58.8
Q ss_pred HHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh-c---CCcEE
Q 008235 211 WKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-A---FGIHT 286 (573)
Q Consensus 211 ip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~-~---~~i~~ 286 (573)
...+.+++.+++.|||| +|||++|++|++..+... .+.++||++||++|+.|+.+.+..+. . ..+++
T Consensus 10 ~~al~~~~~lliEA~TG-tGKTlAYLlpal~~~~~~--------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTG-VGKTLAMIMAALTMLKER--------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHhcCCeEEEEcCCC-CcHHHHHHHHHHHHHHhc--------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 34455678999999999 999999999999887632 25789999999999999999888875 2 35666
Q ss_pred EEeCCC
Q 008235 287 VSLHPG 292 (573)
Q Consensus 287 ~~~~gg 292 (573)
+.+.|+
T Consensus 81 ~~lkGr 86 (636)
T TIGR03117 81 GFFPGS 86 (636)
T ss_pred EEEECC
Confidence 665554
No 121
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.65 E-value=9e-14 Score=153.68 Aligned_cols=124 Identities=8% Similarity=0.064 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~ 282 (573)
+++|.-+.-.+.. .-|+...|| .||||++.+|++-..+ .|..+-|++++..||.+-++++..+ ..+
T Consensus 78 ydvQlig~l~L~~--G~IaEm~TG-EGKTL~a~l~ayl~aL----------~G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 78 FDVQLIGGLVLND--GKIAEMKTG-EGKTLVATLPAYLNAL----------TGKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred CchHhhhhHhhcC--CccccccCC-CCchHHHHHHHHHHHh----------cCCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 8888887655554 468899999 9999999999963333 3678999999999999999999886 667
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcCC------CCCCCccEEEEeCccccc
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLKA------IDVSGVSLLVVDRLDSLS 343 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~~------~~l~~l~~lViDEad~ll 343 (573)
|++++++.++.+....... +.+||+++|...+ .|+|+.+. ...+.+.+.||||||.++
T Consensus 145 GLsvg~i~~~~~~~err~a---Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 145 GLTVGLIQEGMSSEERKKN---YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred CCceeeeCCCCChHHHHHh---cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9999999998876543322 3689999998654 24443321 235778999999999764
No 122
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.63 E-value=4.1e-14 Score=149.88 Aligned_cols=298 Identities=9% Similarity=0.030 Sum_probs=184.2
Q ss_pred HHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHH-hhh-hcCCcEEE
Q 008235 210 FWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC-KPL-KAFGIHTV 287 (573)
Q Consensus 210 aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~-~~l-~~~~i~~~ 287 (573)
.+..+-...-+|++.+|| ||||.- +| +.|....... .| .+-+.-|.|--|.-+...+ .++ ..+|-.|+
T Consensus 59 il~~ve~nqvlIviGeTG-sGKSTQ--ip--QyL~eaG~~~----~g-~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 59 ILYAVEDNQVLIVIGETG-SGKSTQ--IP--QYLAEAGFAS----SG-KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred HHHHHHHCCEEEEEcCCC-CCcccc--Hh--HHHHhccccc----CC-cEEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 445555667788889999 999964 44 4444432221 23 3677778887776666433 334 22343333
Q ss_pred EeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-----cchHHHHHHhcCCCCcEE
Q 008235 288 SLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-----GDTLSLIRQSISGKPHTV 362 (573)
Q Consensus 288 ~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-----~~~l~~Il~~l~~~~q~l 362 (573)
..+-=.+ .......|.+.|-|.|+..+.... .|+..++|||||||.=.= ...+++|++. +++..++
T Consensus 129 Y~IRFed-------~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklI 199 (674)
T KOG0922|consen 129 YTIRFED-------STSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLI 199 (674)
T ss_pred eEEEecc-------cCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEE
Confidence 3221110 001146799999999987766543 488999999999994221 3444444443 3567899
Q ss_pred EEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecC
Q 008235 363 VFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGK 442 (573)
Q Consensus 363 ~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s 442 (573)
++|||+.. ..+...|...|+ +.+.... ..|+..|..-+ ..+-....+..+.++..... .+-+|||...
T Consensus 200 imSATlda--~kfS~yF~~a~i--~~i~GR~----fPVei~y~~~p-~~dYv~a~~~tv~~Ih~~E~---~GDILvFLtG 267 (674)
T KOG0922|consen 200 IMSATLDA--EKFSEYFNNAPI--LTIPGRT----FPVEILYLKEP-TADYVDAALITVIQIHLTEP---PGDILVFLTG 267 (674)
T ss_pred EEeeeecH--HHHHHHhcCCce--EeecCCC----CceeEEeccCC-chhhHHHHHHHHHHHHccCC---CCCEEEEeCC
Confidence 99999973 445544445574 4554321 13555554433 33344333333334333333 6799999999
Q ss_pred hhhHHHHHHHHHHC------CCCee-eecCCCH--HHHHHHHH--hcCCCCCeEEEEeccccCCCccCCCCEEEeCCC--
Q 008235 443 DSKFQNLVSTLKCK------GYSIS-TGSNCIV--SHIKNSVE--ADGRKRPAVSMIDKDHISTAELEEYEVVIVPDF-- 509 (573)
Q Consensus 443 ~~~~~~l~~~L~~~------g~~~~-~~~~~~~--~~~l~~F~--~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~-- 509 (573)
.++++.+++.|... +++.. .-.||.+ .+..+-|. -.|..+++++ ++++. .-|-|++|.+||.-++
T Consensus 268 qeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIls-TNIAE-TSlTI~GI~YVVDsG~vK 345 (674)
T KOG0922|consen 268 QEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILS-TNIAE-TSLTIDGIRYVVDSGFVK 345 (674)
T ss_pred HHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEE-cceee-eeEEecceEEEEcCCceE
Confidence 99999999988765 12111 1145543 23344451 2345566555 45552 4799999999997554
Q ss_pred ----------------CCCHHHHHHHHhccccCCCcceEEEEeccccH
Q 008235 510 ----------------IISMKNYVEILTSMARHTVSGILHSFFTKDDA 541 (573)
Q Consensus 510 ----------------P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~ 541 (573)
|-|-.+-.||.||+||.| +|.|+-+|+.++.
T Consensus 346 ~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 346 QKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred EEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 557788999999999965 9999999998765
No 123
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.63 E-value=9.5e-15 Score=130.28 Aligned_cols=141 Identities=21% Similarity=0.219 Sum_probs=107.5
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHH
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~ 297 (573)
+++++.+||| +|||..++..+....... ...+++|++|++.|+.|+.+.+......++.+..+.++.....
T Consensus 1 ~~~~i~~~~G-~GKT~~~~~~~~~~~~~~--------~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTG-SGKTLAALLPILELLDSL--------KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCC-CchhHHHHHHHHHHHhcc--------cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhH
Confidence 4689999999 999999888877665542 3568999999999999999888876332577777777766555
Q ss_pred HHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHH---HHHHhcCCCCcEEEEeccC
Q 008235 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLS---LIRQSISGKPHTVVFNDCL 368 (573)
Q Consensus 298 ~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~---~Il~~l~~~~q~l~~SAT~ 368 (573)
+...... +.+|+++|++.+...+...........++||||+|.+....... ..........+++++|||+
T Consensus 72 ~~~~~~~-~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 72 QEKLLSG-KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHhcC-CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 4444444 79999999999988877765566789999999999988622111 2344446778999999995
No 124
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.60 E-value=7.4e-13 Score=153.64 Aligned_cols=130 Identities=8% Similarity=0.071 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCC----CCeeee--cCCCHHHHHHHHHhcCCCCCeEEE
Q 008235 414 ILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKG----YSISTG--SNCIVSHIKNSVEADGRKRPAVSM 487 (573)
Q Consensus 414 ~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g----~~~~~~--~~~~~~~~l~~F~~~g~~~~l~~l 487 (573)
...+.+.|..++... .+++|||++|....+.++..|.... +.+..- ..+.+.+.++.| +.+...+++.
T Consensus 737 ~~~la~~i~~l~~~~----~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F-~~~~~~iLlG- 810 (928)
T PRK08074 737 IEEVAAYIAKIAKAT----KGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQF-QQFDKAILLG- 810 (928)
T ss_pred HHHHHHHHHHHHHhC----CCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHH-HhcCCeEEEe-
Confidence 345666666665433 4799999999999999999987542 333321 136788899999 7777777655
Q ss_pred Eecccc-CCCccCC--CCEEEeCCCCC----C--------------------------HHHHHHHHhccccCCCcceEEE
Q 008235 488 IDKDHI-STAELEE--YEVVIVPDFII----S--------------------------MKNYVEILTSMARHTVSGILHS 534 (573)
Q Consensus 488 vd~~s~-rGlDip~--v~~VI~~d~P~----s--------------------------~~~YiqR~GR~gR~g~~G~~i~ 534 (573)
+.+. .|+|+|+ +++||...+|- + +..+.|-+||.=|....--+++
T Consensus 811 --~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ 888 (928)
T PRK08074 811 --TSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVF 888 (928)
T ss_pred --cCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEE
Confidence 3333 4999996 47888877653 2 1233577899988875422455
Q ss_pred Eeccc--cHHHHHHHHHHH
Q 008235 535 FFTKD--DAAHAGQMIEIL 551 (573)
Q Consensus 535 ~~~~~--d~~~~~~l~~~l 551 (573)
++++. ...+-+.+.+.|
T Consensus 889 ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 889 VLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred EecCccccchHHHHHHHhC
Confidence 55554 333444444443
No 125
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.60 E-value=3.9e-13 Score=140.19 Aligned_cols=287 Identities=15% Similarity=0.142 Sum_probs=203.2
Q ss_pred CCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEE------EeCC--------------CCCHHHHHHHhh----------
Q 008235 254 FTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTV------SLHP--------------GAAIDHQITGLR---------- 303 (573)
Q Consensus 254 ~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~------~~~g--------------g~~~~~~~~~l~---------- 303 (573)
...|++|||+|+|.-|.++.+.+-.+...+..+. .-+| .......+..+-
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 4689999999999999999888877632210000 0011 000111111110
Q ss_pred --------------cCCCcEEEeCHHHHHHHHHc------CCCCCCCccEEEEeCcccccC--cchHHHHHHhcC---C-
Q 008235 304 --------------SCEPEFLVSTPERLLKLVSL------KAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSIS---G- 357 (573)
Q Consensus 304 --------------~~~~~IlV~TP~rL~~~l~~------~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l~---~- 357 (573)
-+..|||||+|=-|...+.. ....|+.+.++|||.||.|+- .+.+..|+..+. .
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCC
Confidence 02579999999988877764 235589999999999999887 888888887773 1
Q ss_pred --------------------CCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCc------cccccceEEEEEEcC---
Q 008235 358 --------------------KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSV------ASQSACIIQSVNVCA--- 408 (573)
Q Consensus 358 --------------------~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~------~~~~~~i~~~~~~~~--- 408 (573)
-+|+++||+..++++..+....+.+....+.+.... ......|.|.+...+
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 179999999999999999998777653333333211 234456788887532
Q ss_pred ---ChhHHHHHHHH-HHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecC----CCHHHHHHHHHhcCC
Q 008235 409 ---SDEEKILKGIQ-VLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSN----CIVSHIKNSVEADGR 480 (573)
Q Consensus 409 ---~~~~k~~~l~~-~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~----~~~~~~l~~F~~~g~ 480 (573)
..+.++..+.. +|..+..... ...+|||++|--+--+|..+|+..++....++. ++...+...| ..|+
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~---~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F-~~G~ 350 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSK---MSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQF-FHGR 350 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccC---CCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHH-HcCC
Confidence 23556666665 4444432333 689999999999999999999998888875422 3556688899 8999
Q ss_pred CCCeEEEEeccccC-----CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCC------cceEEEEeccccHHHHHHHHH
Q 008235 481 KRPAVSMIDKDHIS-----TAELEEYEVVIVPDFIISMKNYVEILTSMARHTV------SGILHSFFTKDDAAHAGQMIE 549 (573)
Q Consensus 481 ~~~l~~lvd~~s~r-----GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~------~G~~i~~~~~~d~~~~~~l~~ 549 (573)
..+++. |. | -..|.+|.+||.|++|..+.=|-.-++-.+.... .+.|.++++..|...+..|+-
T Consensus 351 ~~iLL~----TE-R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 351 KPILLY----TE-RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred ceEEEE----Eh-HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 888644 32 4 6789999999999999999988887765554432 578999999999988887753
No 126
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=3e-12 Score=141.43 Aligned_cols=124 Identities=8% Similarity=0.038 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~ 282 (573)
+++|...--.+..|+ |+...|| -||||++.+|++-..+ .|..+-||+++..||..=.+++..+ ..+
T Consensus 87 ydVQliGgl~Lh~G~--IAEM~TG-EGKTL~atlpaylnAL----------~GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 87 FDVQLIGGMVLHEGQ--IAEMKTG-EGKTLVATLPSYLNAL----------TGKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred chhHHHhhhhhcCCc--eeeecCC-CChhHHHHHHHHHHhh----------cCCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 888888776666664 7789999 9999999999885444 4778999999999999999988886 557
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-----HHHHHc--CCCCCCCccEEEEeCccccc
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-----LKLVSL--KAIDVSGVSLLVVDRLDSLS 343 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-----~~~l~~--~~~~l~~l~~lViDEad~ll 343 (573)
|++|+++.++.+..... .. +.+||+++|+..| .|.+.. .....+.+.+.||||||.+|
T Consensus 154 GLtvg~i~~~~~~~err--~a-Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 154 GLSVGLIQQDMSPEERK--KN-YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CCeEEEECCCCChHHHH--Hh-cCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99999998887654432 22 3789999999887 444443 22446789999999999865
No 127
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.56 E-value=2.9e-13 Score=150.84 Aligned_cols=309 Identities=11% Similarity=0.064 Sum_probs=193.3
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh-h-h
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-L-K 280 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~-l-~ 280 (573)
....+.+.+..+.+..-+++...|| +|||.-.---+++...... ....+++--|.|-=|.-+++.+.. . .
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTG-cGKTTQvpQfiLd~~~~~~-------~~~~IicTQPRRIsAIsvAeRVa~ER~~ 245 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETG-CGKTTQVPQFILDEAIESG-------AACNIICTQPRRISAISVAERVAKERGE 245 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCC-CCchhhhhHHHHHHHHhcC-------CCCeEEecCCchHHHHHHHHHHHHHhcc
Confidence 4556777778888888888889999 9999764444444443332 244577778999888888866544 2 2
Q ss_pred cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-cchHHHHHHhc---C
Q 008235 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSI---S 356 (573)
Q Consensus 281 ~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l---~ 356 (573)
..|-.|+.-++... .... ...+++||.|.|++.|.. .-.+.++.++|+||+|.=-- .+-+.-++..+ .
T Consensus 246 ~~g~~VGYqvrl~~------~~s~-~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~ 317 (924)
T KOG0920|consen 246 SLGEEVGYQVRLES------KRSR-ETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRN 317 (924)
T ss_pred ccCCeeeEEEeeec------ccCC-ceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhC
Confidence 23433332222211 1112 467999999999999887 45688999999999995433 33333333332 5
Q ss_pred CCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccc---------------cccceEEE------------EEEcCC
Q 008235 357 GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVAS---------------QSACIIQS------------VNVCAS 409 (573)
Q Consensus 357 ~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~---------------~~~~i~~~------------~~~~~~ 409 (573)
++.++++||||+. .+.+...|.+.|+ +.+...... ......+. .... .
T Consensus 318 p~LkvILMSAT~d--ae~fs~YF~~~pv--i~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 392 (924)
T KOG0920|consen 318 PDLKVILMSATLD--AELFSDYFGGCPV--ITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW-E 392 (924)
T ss_pred CCceEEEeeeecc--hHHHHHHhCCCce--EeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhc-c
Confidence 7889999999998 3333333334443 333221000 00000011 0011 1
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCC-------CCeeeecCCCHH-----HHHHHHHh
Q 008235 410 DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKG-------YSISTGSNCIVS-----HIKNSVEA 477 (573)
Q Consensus 410 ~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g-------~~~~~~~~~~~~-----~~l~~F~~ 477 (573)
.+-....+.+++..+..... .+.+|||.+...+...+...|.... +-+.. .|+.+. .+.... -
T Consensus 393 ~~id~~Li~~li~~I~~~~~---~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilp-lHs~~~s~eQ~~VF~~p-p 467 (924)
T KOG0920|consen 393 PEIDYDLIEDLIEYIDEREF---EGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILP-LHSSIPSEEQQAVFKRP-P 467 (924)
T ss_pred ccccHHHHHHHHHhcccCCC---CceEEEEcCCHHHHHHHHHHhhhccccccccceEEEe-ccccCChHHHHHhcCCC-C
Confidence 22345566677777666654 7899999999999999999996531 22223 466432 244443 3
Q ss_pred cCCCCCeEEEEeccccCCCccCCCCEEEe--------CCCCCCH----------HHHHHHHhccccCCCcceEEEEeccc
Q 008235 478 DGRKRPAVSMIDKDHISTAELEEYEVVIV--------PDFIISM----------KNYVEILTSMARHTVSGILHSFFTKD 539 (573)
Q Consensus 478 ~g~~~~l~~lvd~~s~rGlDip~v~~VI~--------~d~P~s~----------~~YiqR~GR~gR~g~~G~~i~~~~~~ 539 (573)
.|...++.+ ++++. ..|-|++|-+||. ||+-.+. ..-.||.||+||. ..|.|+.+++..
T Consensus 468 ~g~RKIIla-TNIAE-TSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 468 KGTRKIILA-TNIAE-TSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred CCcchhhhh-hhhHh-hcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 455566555 45552 5999999999996 4544333 3345999999994 699999999875
Q ss_pred c
Q 008235 540 D 540 (573)
Q Consensus 540 d 540 (573)
.
T Consensus 545 ~ 545 (924)
T KOG0920|consen 545 R 545 (924)
T ss_pred h
Confidence 3
No 128
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.53 E-value=8.9e-14 Score=130.80 Aligned_cols=150 Identities=7% Similarity=0.032 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHHhc-------CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHH
Q 008235 203 VNSWGIEFWKCYSS-------AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (573)
Q Consensus 203 ~t~iQ~~aip~il~-------g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~ 275 (573)
++|+|.+++..+.. .+.+++.+||| ||||++++..+.. +.. .+||++|+..|+.|+.+.
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tG-sGKT~~~~~~~~~-l~~------------~~l~~~p~~~l~~Q~~~~ 69 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTG-SGKTIIALALILE-LAR------------KVLIVAPNISLLEQWYDE 69 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTT-SSHHHHHHHHHHH-HHC------------EEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCC-CCcChhhhhhhhc-ccc------------ceeEecCHHHHHHHHHHH
Confidence 48999999999884 58999999999 9999997754433 321 699999999999999999
Q ss_pred HhhhhcCCcEEEE------------eCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC-----------CCCCCcc
Q 008235 276 CKPLKAFGIHTVS------------LHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA-----------IDVSGVS 332 (573)
Q Consensus 276 ~~~l~~~~i~~~~------------~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~-----------~~l~~l~ 332 (573)
+..+......... .......... ........++++.|...|........ .......
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T PF04851_consen 70 FDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDK-SESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFD 148 (184)
T ss_dssp HHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHH-HHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSES
T ss_pred HHHhhhhhhhhcccccccccccccccccccccccc-cccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCC
Confidence 9766332222111 1111111111 22222368999999999987765421 2335678
Q ss_pred EEEEeCcccccCcchHHHHHHhcCCCCcEEEEeccCC
Q 008235 333 LLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLT 369 (573)
Q Consensus 333 ~lViDEad~ll~~~~l~~Il~~l~~~~q~l~~SAT~~ 369 (573)
+||+||||++........|+. .....+++||||..
T Consensus 149 ~vI~DEaH~~~~~~~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 149 LVIIDEAHHYPSDSSYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEEEETGGCTHHHHHHHHHHH--SSCCEEEEEESS-S
T ss_pred EEEEehhhhcCCHHHHHHHHc--CCCCeEEEEEeCcc
Confidence 999999999875222666666 55677999999975
No 129
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.51 E-value=4.7e-13 Score=140.83 Aligned_cols=297 Identities=11% Similarity=0.038 Sum_probs=172.1
Q ss_pred HHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh-h-hcCCcEE
Q 008235 209 EFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-L-KAFGIHT 286 (573)
Q Consensus 209 ~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~-l-~~~~i~~ 286 (573)
+.+..+-...-|+++..|| ||||.-. -++|+..... ....+-+--|.|.-|..+...+.. + ..+|-.|
T Consensus 363 ~ll~~ir~n~vvvivgETG-SGKTTQl----~QyL~edGY~-----~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~V 432 (1042)
T KOG0924|consen 363 QLLSVIRENQVVVIVGETG-SGKTTQL----AQYLYEDGYA-----DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTV 432 (1042)
T ss_pred HHHHHHhhCcEEEEEecCC-CCchhhh----HHHHHhcccc-----cCCeeeecCchHHHHHHHHHHHHHHhCCcccccc
Confidence 3333444455677889999 9999752 2444443221 122444556899888888765543 5 2223222
Q ss_pred EEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-cchHHHHHHhc---CCCCcEE
Q 008235 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSI---SGKPHTV 362 (573)
Q Consensus 287 ~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l---~~~~q~l 362 (573)
+..+.-. .......-|=+.|-|.|+.-.- ..-.|.+.+.||+||||.=.- .+-+..|+... +.+..++
T Consensus 433 GYsIRFE-------dvT~~~T~IkymTDGiLLrEsL-~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKli 504 (1042)
T KOG0924|consen 433 GYSIRFE-------DVTSEDTKIKYMTDGILLRESL-KDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLI 504 (1042)
T ss_pred ceEEEee-------ecCCCceeEEEeccchHHHHHh-hhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEE
Confidence 2211100 0001134577899998864322 223577899999999995332 44444444433 4578899
Q ss_pred EEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecC
Q 008235 363 VFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGK 442 (573)
Q Consensus 363 ~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s 442 (573)
+.|||+. .+.++..|-+.|. +.+.... ..+.-.+...+ -+ .++...+.+.+.-+.....+-+|||...
T Consensus 505 VtSATm~--a~kf~nfFgn~p~--f~IpGRT----yPV~~~~~k~p-~e---DYVeaavkq~v~Ihl~~~~GdilIfmtG 572 (1042)
T KOG0924|consen 505 VTSATMD--AQKFSNFFGNCPQ--FTIPGRT----YPVEIMYTKTP-VE---DYVEAAVKQAVQIHLSGPPGDILIFMTG 572 (1042)
T ss_pred Eeecccc--HHHHHHHhCCCce--eeecCCc----cceEEEeccCc-hH---HHHHHHHhhheEeeccCCCCCEEEecCC
Confidence 9999997 4555555555674 4444321 12333333333 22 3344455555444432335789999998
Q ss_pred hhhHHHHHHHHHH----C------CCCeeeecCCCHHH--HHHHHH--hcCCCCCeEEEEeccccCCCccCCCCEEEeCC
Q 008235 443 DSKFQNLVSTLKC----K------GYSISTGSNCIVSH--IKNSVE--ADGRKRPAVSMIDKDHISTAELEEYEVVIVPD 508 (573)
Q Consensus 443 ~~~~~~l~~~L~~----~------g~~~~~~~~~~~~~--~l~~F~--~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d 508 (573)
.+.++-.+..+.. . ++.+..+ .+.+.+ ..+-|- ..|-..+|++ ++++. ..|-||++.+||..+
T Consensus 573 qediE~t~~~i~~~l~ql~~~~~~~L~vlpi-YSQLp~dlQ~kiFq~a~~~vRK~IvA-TNIAE-TSLTi~gI~yVID~G 649 (1042)
T KOG0924|consen 573 QEDIECTCDIIKEKLEQLDSAPTTDLAVLPI-YSQLPADLQAKIFQKAEGGVRKCIVA-TNIAE-TSLTIPGIRYVIDTG 649 (1042)
T ss_pred CcchhHHHHHHHHHHHhhhcCCCCceEEEee-hhhCchhhhhhhcccCCCCceeEEEe-ccchh-hceeecceEEEEecC
Confidence 8776665555433 2 3334432 333322 233341 2344455544 44552 489999999999765
Q ss_pred C------------------CCCHHHHHHHHhccccCCCcceEEEEeccc
Q 008235 509 F------------------IISMKNYVEILTSMARHTVSGILHSFFTKD 539 (573)
Q Consensus 509 ~------------------P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~ 539 (573)
+ |-|-..--||.||+||.| +|.|+-+|+..
T Consensus 650 y~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 650 YCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 4 556667789999999976 99999999873
No 130
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.49 E-value=3.3e-12 Score=139.33 Aligned_cols=157 Identities=11% Similarity=0.131 Sum_probs=114.7
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh-h
Q 008235 201 LFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-L 279 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~-l 279 (573)
+-|..||.+.+-.+=.+..++++|||. +|||++- .-+++.++... +.-.+|+++||.+|+.|+...+.. +
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTS-aGKTfis-fY~iEKVLRes-------D~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTS-AGKTFIS-FYAIEKVLRES-------DSDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeecc-CCceecc-HHHHHHHHhhc-------CCCEEEEecchHHHhhhhhHHHHHhh
Confidence 445889999999999999999999999 9999863 34455555442 466899999999999999976655 4
Q ss_pred -hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHc---CCCCCCCccEEEEeCcccccC---cchHHHHH
Q 008235 280 -KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL---KAIDVSGVSLLVVDRLDSLSK---GDTLSLIR 352 (573)
Q Consensus 280 -~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~---~~~~l~~l~~lViDEad~ll~---~~~l~~Il 352 (573)
...-.+...+.|....+.++..+ +|+|+|+-|+.|-.+|.. ......+++++|+||+|.+.. .--.++++
T Consensus 581 ~~~t~~rg~sl~g~ltqEYsinp~---nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll 657 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYSINPW---NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLL 657 (1330)
T ss_pred ccCccccchhhHhhhhHHhcCCch---hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHH
Confidence 22223334455555444433311 589999999999888877 335578999999999999887 33334444
Q ss_pred HhcCCCCcEEEEeccCCcc
Q 008235 353 QSISGKPHTVVFNDCLTYT 371 (573)
Q Consensus 353 ~~l~~~~q~l~~SAT~~~~ 371 (573)
..+ .+.++++|||+.+.
T Consensus 658 ~li--~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 658 LLI--PCPFLVLSATIGNP 674 (1330)
T ss_pred Hhc--CCCeeEEecccCCH
Confidence 444 37899999999763
No 131
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.48 E-value=4.4e-13 Score=118.74 Aligned_cols=125 Identities=19% Similarity=0.158 Sum_probs=99.6
Q ss_pred eEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHH
Q 008235 400 IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNS 474 (573)
Q Consensus 400 i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~ 474 (573)
|.+.+...+ +.|...+.+++..... . ..++||||++...++.++..|...+..+..+ ||. +..+++.
T Consensus 2 i~~~~~~~~--~~k~~~i~~~i~~~~~--~---~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 73 (131)
T cd00079 2 IKQYVLPVE--DEKLEALLELLKEHLK--K---GGKVLIFCPSKKMLDELAELLRKPGIKVAAL-HGDGSQEEREEVLKD 73 (131)
T ss_pred cEEEEEECC--HHHHHHHHHHHHhccc--C---CCcEEEEeCcHHHHHHHHHHHHhcCCcEEEE-ECCCCHHHHHHHHHH
Confidence 344555443 3788888888877643 2 5799999999999999999999888887754 553 4558899
Q ss_pred HHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEE
Q 008235 475 VEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSF 535 (573)
Q Consensus 475 F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~ 535 (573)
| +++...++++ +.+. .+|+|+|++++||++++|.+...|+|++||++|.|..|.+++|
T Consensus 74 f-~~~~~~ili~-t~~~-~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 74 F-REGEIVVLVA-TDVI-ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred H-HcCCCcEEEE-cChh-hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9 7777666554 4455 3699999999999999999999999999999999999988764
No 132
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.47 E-value=1.9e-12 Score=144.13 Aligned_cols=305 Identities=14% Similarity=0.125 Sum_probs=193.2
Q ss_pred CHHHHHHHHHHhcC-CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHH-hhhhc
Q 008235 204 NSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC-KPLKA 281 (573)
Q Consensus 204 t~iQ~~aip~il~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~-~~l~~ 281 (573)
.|+|.++++.+.+. .+|++.||+| ||||.+.-+.++. . ..-.+++++.|..+.+..+++.+ ++|..
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~g-sgkt~~ae~a~l~---~--------~~~~~~vyi~p~~~i~~~~~~~w~~~f~~ 1212 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNG-SGKTACAELALLR---P--------DTIGRAVYIAPLEEIADEQYRDWEKKFSK 1212 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCC-CchhHHHHHHhcC---C--------ccceEEEEecchHHHHHHHHHHHHHhhcc
Confidence 88999999999886 5688889999 9999998887774 1 14668999999999998666544 55644
Q ss_pred -CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---------cchHHHH
Q 008235 282 -FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---------GDTLSLI 351 (573)
Q Consensus 282 -~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---------~~~l~~I 351 (573)
.|..++-+.|..+.+... +. .-+|+|+||+++ ++++ ....+++.|.||+|.+.+ .. ++.|
T Consensus 1213 ~~G~~~~~l~ge~s~~lkl--~~--~~~vii~tpe~~-d~lq----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~i 1282 (1674)
T KOG0951|consen 1213 LLGLRIVKLTGETSLDLKL--LQ--KGQVIISTPEQW-DLLQ----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYI 1282 (1674)
T ss_pred ccCceEEecCCccccchHH--hh--hcceEEechhHH-HHHh----hhhhcceEeeehhhhhcccCCceEEEEee-HHHH
Confidence 488888888877765432 22 358999999997 4443 577899999999998776 33 7777
Q ss_pred HHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHH----HHHHHHHhcc
Q 008235 352 RQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG----IQVLDHAYGD 427 (573)
Q Consensus 352 l~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l----~~~L~~~~~~ 427 (573)
-..+.+..+++.+|..+.+ .+++ .++ .+-..+.+.+.....+-.|.-..+-..........+ +..+.++..
T Consensus 1283 a~q~~k~ir~v~ls~~lan-a~d~--ig~-s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~- 1357 (1674)
T KOG0951|consen 1283 ASQLEKKIRVVALSSSLAN-ARDL--IGA-SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAG- 1357 (1674)
T ss_pred HHHHHhheeEEEeehhhcc-chhh--ccc-cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhc-
Confidence 7788888999999998877 3444 112 222245555432222222322222222233333222 223333332
Q ss_pred CCCCCCCcEEEEecChhhHHHHHHHHHHC--------------CCCe---eeecCC---------CHHHHHHHHHhcCCC
Q 008235 428 HFHSEPLKVLYIVGKDSKFQNLVSTLKCK--------------GYSI---STGSNC---------IVSHIKNSVEADGRK 481 (573)
Q Consensus 428 ~~~~~~~k~lIF~~s~~~~~~l~~~L~~~--------------g~~~---~~~~~~---------~~~~~l~~F~~~g~~ 481 (573)
...+++||+++++.|..++.-|-.. +... ..+.|| +..-+-.-| ..|..
T Consensus 1358 ----~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~-e~g~i 1432 (1674)
T KOG0951|consen 1358 ----NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLF-EAGAI 1432 (1674)
T ss_pred ----CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHH-hcCcE
Confidence 2579999999999999887544221 0000 011222 111134445 66666
Q ss_pred CCeEEEEeccccCCCccCCCCEEEe-----CC------CCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHH
Q 008235 482 RPAVSMIDKDHISTAELEEYEVVIV-----PD------FIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQM 547 (573)
Q Consensus 482 ~~l~~lvd~~s~rGlDip~v~~VI~-----~d------~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l 547 (573)
.+++.-.| .-|+-... +.||. || .+.++....|++|++.|+ |.|+++.......++++.
T Consensus 1433 ~v~v~s~~---~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1433 QVCVMSRD---CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred EEEEEEcc---cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHHh
Confidence 66433112 12444332 23332 22 345688999999999984 689999887777666654
No 133
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.46 E-value=1.7e-12 Score=136.52 Aligned_cols=303 Identities=11% Similarity=0.040 Sum_probs=183.7
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHH-HHhhh-h
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS-VCKPL-K 280 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~-~~~~l-~ 280 (573)
..++-.+.+.++-...=+|+.+.|| ||||.- || +.|....... .|..+-+--|.|--|..|.. +..++ .
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTG-SGKTTQ--iP--QyL~EaGytk----~gk~IgcTQPRRVAAmSVAaRVA~EMgv 336 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETG-SGKTTQ--IP--QYLYEAGYTK----GGKKIGCTQPRRVAAMSVAARVAEEMGV 336 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCC-CCcccc--cc--HHHHhccccc----CCceEeecCcchHHHHHHHHHHHHHhCc
Confidence 4555666777777778888999999 999964 55 4455443222 35557777899988888774 44445 1
Q ss_pred cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccc-cC----cchHHHHHHhc
Q 008235 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL-SK----GDTLSLIRQSI 355 (573)
Q Consensus 281 ~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~l-l~----~~~l~~Il~~l 355 (573)
.+|-.|+.-+. - +..-....-|=+.|-|.|+.-+.. ..+|.+.+++||||||.= +. +..+..|...
T Consensus 337 kLG~eVGYsIR-----F--EdcTSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar~- 407 (902)
T KOG0923|consen 337 KLGHEVGYSIR-----F--EDCTSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARF- 407 (902)
T ss_pred ccccccceEEE-----e--ccccCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhh-
Confidence 12222211000 0 000001345678999998765433 356889999999999942 22 3344444333
Q ss_pred CCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCc
Q 008235 356 SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLK 435 (573)
Q Consensus 356 ~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k 435 (573)
+++..+++.|||+.. ..+...|-..|+ +.+.... ..+.-+|..++ +.+-+...+.-+.++..... .+-
T Consensus 408 RpdLKllIsSAT~DA--ekFS~fFDdapI--F~iPGRR----yPVdi~Yt~~P-EAdYldAai~tVlqIH~tqp---~GD 475 (902)
T KOG0923|consen 408 RPDLKLLISSATMDA--EKFSAFFDDAPI--FRIPGRR----YPVDIFYTKAP-EADYLDAAIVTVLQIHLTQP---LGD 475 (902)
T ss_pred CCcceEEeeccccCH--HHHHHhccCCcE--EeccCcc----cceeeecccCC-chhHHHHHHhhheeeEeccC---Ccc
Confidence 578899999999974 444444444554 3333221 23555566665 45454444333333333323 688
Q ss_pred EEEEecChhhHHHHHHHHHH----CCC-----CeeeecCCCHHHH--HHHHH--hcCCCCCeEEEEeccccCCCccCCCC
Q 008235 436 VLYIVGKDSKFQNLVSTLKC----KGY-----SISTGSNCIVSHI--KNSVE--ADGRKRPAVSMIDKDHISTAELEEYE 502 (573)
Q Consensus 436 ~lIF~~s~~~~~~l~~~L~~----~g~-----~~~~~~~~~~~~~--l~~F~--~~g~~~~l~~lvd~~s~rGlDip~v~ 502 (573)
+|||....++.+...+.|.. +|- -+.. ++++...- ..=|. -.|...++.+ ++++. ..|-|++|.
T Consensus 476 ILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~P-iYaNLPselQakIFePtP~gaRKVVLA-TNIAE-TSlTIdgI~ 552 (902)
T KOG0923|consen 476 ILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLP-IYANLPSELQAKIFEPTPPGARKVVLA-TNIAE-TSLTIDGIK 552 (902)
T ss_pred EEEEeccHHHHHHHHHHHHHHHHHhccccceEEEee-ccccCChHHHHhhcCCCCCCceeEEEe-ecchh-hceeecCeE
Confidence 99999998887766665543 332 2222 45655432 22341 2333455544 45552 489999999
Q ss_pred EEEeCCC------------------CCCHHHHHHHHhccccCCCcceEEEEeccc
Q 008235 503 VVIVPDF------------------IISMKNYVEILTSMARHTVSGILHSFFTKD 539 (573)
Q Consensus 503 ~VI~~d~------------------P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~ 539 (573)
+||.-++ |-|-.+-.||+||+||.| +|.|+-+|+..
T Consensus 553 yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 553 YVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred EEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 9998665 335567789999999977 99999999953
No 134
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.45 E-value=1e-11 Score=132.77 Aligned_cols=318 Identities=12% Similarity=0.089 Sum_probs=192.3
Q ss_pred CCCHHHHHHHHH----HhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHh
Q 008235 202 FVNSWGIEFWKC----YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (573)
Q Consensus 202 ~~t~iQ~~aip~----il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~ 277 (573)
.+.++|.+.+.- ..+|-+.|..-.-| -|||+- .|.+|.++...... .|| -||+||--.|. .+.+.++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMG-LGKTlQ-tIs~l~yl~~~~~~-----~GP-fLVi~P~StL~-NW~~Ef~ 237 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMG-LGKTLQ-TISLLGYLKGRKGI-----PGP-FLVIAPKSTLD-NWMNEFK 237 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcc-cchHHH-HHHHHHHHHHhcCC-----CCC-eEEEeeHhhHH-HHHHHHH
Confidence 357899886544 34578889999999 999986 35566666543322 244 58899977664 4666666
Q ss_pred hhhcCCcEEEEeCCCCCHHHHH--HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-cchHHHHHHh
Q 008235 278 PLKAFGIHTVSLHPGAAIDHQI--TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQS 354 (573)
Q Consensus 278 ~l~~~~i~~~~~~gg~~~~~~~--~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~ 354 (573)
+|++ ++.+++++|........ ..+..+..+|+|+|-+..+.- ...+.--.-+||||||||++-. ...+..++..
T Consensus 238 rf~P-~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~ 314 (971)
T KOG0385|consen 238 RFTP-SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILRE 314 (971)
T ss_pred HhCC-CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchhhHHHHHHHH
Confidence 6654 89999999876432221 223335799999998866432 1122223457999999999988 5666677777
Q ss_pred cCCCCcEEEEeccCC-ccHHHH---H-------------------------------------HHHhc-----------C
Q 008235 355 ISGKPHTVVFNDCLT-YTSVPA---V-------------------------------------QNLLL-----------G 382 (573)
Q Consensus 355 l~~~~q~l~~SAT~~-~~~~~~---~-------------------------------------~~~l~-----------~ 382 (573)
+..... ++++.|.- +.+.++ + +-|+. .
T Consensus 315 f~~~nr-LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 315 FKTDNR-LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred hcccce-eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 654433 44455532 111110 0 00000 0
Q ss_pred Cc--eEEEcCCC--------------------ccc------------cccceEEEEEEcC--------------ChhHHH
Q 008235 383 SI--NRLSLNQS--------------------VAS------------QSACIIQSVNVCA--------------SDEEKI 414 (573)
Q Consensus 383 ~~--~~i~~~~~--------------------~~~------------~~~~i~~~~~~~~--------------~~~~k~ 414 (573)
|. ..+.++.. ... ...+..|-|.+-. ....|+
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm 473 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKM 473 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcce
Confidence 00 01111100 000 0000011111000 023466
Q ss_pred HHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeee----cCCCHHHHHHHHHhcCCCCCeEEEEec
Q 008235 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTG----SNCIVSHIKNSVEADGRKRPAVSMIDK 490 (573)
Q Consensus 415 ~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~l~~F~~~g~~~~l~~lvd~ 490 (573)
..|-.+|..+... +.+||||..=-...+-|-.+.-..++....+ .|.+|...++.|...+.. ..+.|+ .
T Consensus 474 ~vLDkLL~~Lk~~-----GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~-~FiFlL-S 546 (971)
T KOG0385|consen 474 LVLDKLLPKLKEQ-----GHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSE-KFIFLL-S 546 (971)
T ss_pred ehHHHHHHHHHhC-----CCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcc-eEEEEE-e
Confidence 6677777776655 4599999876666677777777778877643 344788899999444433 444444 3
Q ss_pred cccC--CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcc--eEEEEeccc
Q 008235 491 DHIS--TAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSG--ILHSFFTKD 539 (573)
Q Consensus 491 ~s~r--GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G--~~i~~~~~~ 539 (573)
|-|. ||++...++||.||--.++..=+|-.-||-|-|+.- .++-|++.+
T Consensus 547 TRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 547 TRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred ccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 3234 899999999999999999888888888888888654 456667765
No 135
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=1.1e-11 Score=127.61 Aligned_cols=344 Identities=13% Similarity=0.121 Sum_probs=220.4
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEeCC-CchhH--HHHHHHHHHHHHHhchhc---------------------cCCCCC
Q 008235 200 PLFVNSWGIEFWKCYSSAKDILETSGS-SSTIV--QIAWIVATAADSIARKEK---------------------EGFSFT 255 (573)
Q Consensus 200 ~~~~t~iQ~~aip~il~g~dvl~~A~T-G~SGK--Tlaf~lp~l~~l~~~~~~---------------------~~~~~~ 255 (573)
..++|+.|.+.+..+.+=+|++..-.| | .|+ +-.|++-+|.|++..+.. ......
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~k-n~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQK-NGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhcccccccc-ccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 344899999999999999999866332 3 455 567899999998654310 001234
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhh-hcC--CcE-E------EEeCCC----------------------CC--------H
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAF--GIH-T------VSLHPG----------------------AA--------I 295 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l-~~~--~i~-~------~~~~gg----------------------~~--------~ 295 (573)
.|.+|||||+||-|..+.+.+..+ ... +-. | .--|+| ++ .
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 799999999999998888777665 211 100 0 001122 11 0
Q ss_pred HHHHHHhh--cCCCcEEEeCHHHHHHHHHcC------CCCCCCccEEEEeCcccccC--cchHHHHHHhcC---CC----
Q 008235 296 DHQITGLR--SCEPEFLVSTPERLLKLVSLK------AIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSIS---GK---- 358 (573)
Q Consensus 296 ~~~~~~l~--~~~~~IlV~TP~rL~~~l~~~------~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l~---~~---- 358 (573)
....-.|- -...|||||+|=-|.-++.+. ...|+.+.++|||-||.|+. .+.+..|+..+. .+
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccCC
Confidence 00000111 125799999998887777631 23478999999999999987 788888887763 11
Q ss_pred -----------------CcEEEEeccCCccHHHHHHHHhcCCceEEEcCCC-----ccccccceEEEEE--EcC----Ch
Q 008235 359 -----------------PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQS-----VASQSACIIQSVN--VCA----SD 410 (573)
Q Consensus 359 -----------------~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~-----~~~~~~~i~~~~~--~~~----~~ 410 (573)
+|+++||+-..+....+...++.+-.-.+..... .....-.|.|.+. .|. ..
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 5899999998887777777766543222222211 1111122333222 121 13
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecC-----CCHHHHHHHHHhcCCCCCeE
Q 008235 411 EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSN-----CIVSHIKNSVEADGRKRPAV 485 (573)
Q Consensus 411 ~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~-----~~~~~~l~~F~~~g~~~~l~ 485 (573)
+.++.++...+---+.... ..-+|||+++--.--++..+++..++.... ++ ..++.+.+-| -.|+..+++
T Consensus 533 D~RFkyFv~~ImPq~~k~t---~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~-i~EYssk~~vsRAR~lF-~qgr~~vlL 607 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRT---ESGILIYIPSYFDFVRVRNYMKKEEISFVM-INEYSSKSKVSRARELF-FQGRKSVLL 607 (698)
T ss_pred hHHHHHHHHhhchhhcccc---cCceEEEecchhhHHHHHHHhhhhhcchHH-HhhhhhHhhhhHHHHHH-HhcCceEEE
Confidence 4566655444332222222 356799999999999999999998877653 23 3455677788 889988865
Q ss_pred EEEeccccCCCccCCCCEEEeCCCCCCHHHH---HHHHhccccCC----CcceEEEEeccccHHHHHHHHH
Q 008235 486 SMIDKDHISTAELEEYEVVIVPDFIISMKNY---VEILTSMARHT----VSGILHSFFTKDDAAHAGQMIE 549 (573)
Q Consensus 486 ~lvd~~s~rGlDip~v~~VI~~d~P~s~~~Y---iqR~GR~gR~g----~~G~~i~~~~~~d~~~~~~l~~ 549 (573)
.+--.--.|-.+|.+|..||.|.+|..+.=| +-+++|+.-.| ..-.|.++++.-|.-.+..++-
T Consensus 608 yTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 608 YTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred EehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 4111111247899999999999999998766 45566665434 2357888999988877776653
No 136
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=4e-12 Score=136.09 Aligned_cols=220 Identities=11% Similarity=0.027 Sum_probs=127.3
Q ss_pred HHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHH-HHhhhhcCC--cEEEE
Q 008235 212 KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS-VCKPLKAFG--IHTVS 288 (573)
Q Consensus 212 p~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~-~~~~l~~~~--i~~~~ 288 (573)
.+|...-=||+|..|| ||||.- +| +.|+........+..+..+=|--|.|--|.-+.. +..+|+.++ +....
T Consensus 266 EaIn~n~vvIIcGeTG-sGKTTQ--vP--QFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqI 340 (1172)
T KOG0926|consen 266 EAINENPVVIICGETG-SGKTTQ--VP--QFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQI 340 (1172)
T ss_pred HHhhcCCeEEEecCCC-CCcccc--ch--HHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEE
Confidence 3344444467788999 999964 55 3344443332222233355566788877766663 445565443 33333
Q ss_pred eCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-----cchHHHHHHh---cC----
Q 008235 289 LHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-----GDTLSLIRQS---IS---- 356 (573)
Q Consensus 289 ~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-----~~~l~~Il~~---l~---- 356 (573)
-+.|.- .. ...|.+.|-|.|+.-|.+. +.|.....+||||||.=.- ...+.+|+.. ..
T Consensus 341 Rfd~ti--------~e-~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~ 410 (1172)
T KOG0926|consen 341 RFDGTI--------GE-DTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQC 410 (1172)
T ss_pred Eecccc--------CC-CceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 333321 11 4679999999998877664 4588899999999995322 2222222221 11
Q ss_pred --CCCcEEEEeccCCccHHHHH--HHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCC
Q 008235 357 --GKPHTVVFNDCLTYTSVPAV--QNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSE 432 (573)
Q Consensus 357 --~~~q~l~~SAT~~~~~~~~~--~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~ 432 (573)
.....++||||+. +.++. +.++..|.-.+.++.... .+.-+|..- ....++.+..+..+.-|...+
T Consensus 411 ~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQf----PVsIHF~kr----T~~DYi~eAfrKtc~IH~kLP 480 (1172)
T KOG0926|consen 411 QIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQF----PVSIHFNKR----TPDDYIAEAFRKTCKIHKKLP 480 (1172)
T ss_pred ccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccC----ceEEEeccC----CCchHHHHHHHHHHHHhhcCC
Confidence 2356899999986 33433 233333222455554311 122222211 122455555555554444345
Q ss_pred CCcEEEEecChhhHHHHHHHHHHC
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCK 456 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~ 456 (573)
.+-+|||+....++..|.+.|++.
T Consensus 481 ~G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 481 PGGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred CCcEEEEEeChHHHHHHHHHHHhh
Confidence 789999999999999999999875
No 137
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.39 E-value=5.8e-10 Score=125.80 Aligned_cols=92 Identities=9% Similarity=0.064 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHH-CCCCeeeecCCCHHHHHHHHHh---cCCCCCeEEE
Q 008235 412 EKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC-KGYSISTGSNCIVSHIKNSVEA---DGRKRPAVSM 487 (573)
Q Consensus 412 ~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~l~~F~~---~g~~~~l~~l 487 (573)
.-...+.+.|..++. . .+.+|||++|....+.++..|.. .+..+..-..+.+.+.++.|.+ .+...++.+
T Consensus 518 ~~~~~~~~~i~~l~~-~----~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~~~~~ll~~f~~~~~~~~~~VL~g- 591 (697)
T PRK11747 518 AHTAEMAEFLPELLE-K----HKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQPRQRLLEKHKKRVDEGEGSVLFG- 591 (697)
T ss_pred HHHHHHHHHHHHHHh-c----CCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCchHHHHHHHHHHHhccCCCeEEEE-
Confidence 345566677777666 2 35699999999999999998864 3445443212345668888833 355566555
Q ss_pred EeccccCCCccCC--CCEEEeCCCC
Q 008235 488 IDKDHISTAELEE--YEVVIVPDFI 510 (573)
Q Consensus 488 vd~~s~rGlDip~--v~~VI~~d~P 510 (573)
++.. ..|||+|+ +++||...+|
T Consensus 592 ~~sf-~EGVD~pGd~l~~vII~kLP 615 (697)
T PRK11747 592 LQSF-AEGLDLPGDYLTQVIITKIP 615 (697)
T ss_pred eccc-cccccCCCCceEEEEEEcCC
Confidence 3333 24999986 7889988766
No 138
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.37 E-value=2.4e-10 Score=129.22 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=53.4
Q ss_pred CHHHHHHHHHH----hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 204 NSWGIEFWKCY----SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 204 t~iQ~~aip~i----l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
.+.|.+.+..+ ..|+.+++.|||| +|||++|++|++...... +..++|.++|+.|-.|+.+....
T Consensus 17 r~~Q~~~~~~v~~a~~~~~~~~iEapTG-tGKTl~yL~~al~~~~~~---------~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 17 RPEQREMAEAVAEALKGGEGLLIEAPTG-TGKTLAYLLPALAYAREE---------GKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEECCCC-ccHHHHHHHHHHHHHHHc---------CCcEEEECCCHHHHHHHHHhhcc
Confidence 89999876443 3346699999999 999999999999877654 46799999999999998876554
No 139
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.32 E-value=3.3e-11 Score=123.27 Aligned_cols=315 Identities=12% Similarity=0.074 Sum_probs=180.1
Q ss_pred CCCCHHHHHHHHHHhc-C--CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHh
Q 008235 201 LFVNSWGIEFWKCYSS-A--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~-g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~ 277 (573)
.++.|+|..++.-+.- | |.-|++.|.| +||||+- +.+...+ ..++||||.+---+.|+..++.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCG-AGKtLVG-vTAa~ti------------kK~clvLcts~VSVeQWkqQfk 366 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCG-AGKTLVG-VTAACTI------------KKSCLVLCTSAVSVEQWKQQFK 366 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecC-CCCceee-eeeeeee------------cccEEEEecCccCHHHHHHHHH
Confidence 4568999999988764 4 7889999999 9999874 3333322 3469999999889999999999
Q ss_pred hhhcC-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-------------HHHHHcCCCCCCCccEEEEeCccccc
Q 008235 278 PLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-------------LKLVSLKAIDVSGVSLLVVDRLDSLS 343 (573)
Q Consensus 278 ~l~~~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-------------~~~l~~~~~~l~~l~~lViDEad~ll 343 (573)
.++.. .-.++.++.... ..... ++.|+|+|-..+ .++|. -..-.++|+||+|.+.
T Consensus 367 ~wsti~d~~i~rFTsd~K-----e~~~~-~~gvvvsTYsMva~t~kRS~eaek~m~~l~-----~~EWGllllDEVHvvP 435 (776)
T KOG1123|consen 367 QWSTIQDDQICRFTSDAK-----ERFPS-GAGVVVTTYSMVAYTGKRSHEAEKIMDFLR-----GREWGLLLLDEVHVVP 435 (776)
T ss_pred hhcccCccceEEeecccc-----ccCCC-CCcEEEEeeehhhhcccccHHHHHHHHHHh-----cCeeeeEEeehhccch
Confidence 98654 333444443321 11222 789999995433 33333 2456799999999876
Q ss_pred CcchHHHHHHhcCCCCcEEEEeccCCccHHHHHH-HHhcCCceEEEcCCCccc---cccceEEEEEEcCC----------
Q 008235 344 KGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ-NLLLGSINRLSLNQSVAS---QSACIIQSVNVCAS---------- 409 (573)
Q Consensus 344 ~~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~-~~l~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~---------- 409 (573)
. ..+++++..... ...+.++||+-.+-..+.. +||-.|. ....+=.+.. --.++.---+.|+-
T Consensus 436 A-~MFRRVlsiv~a-HcKLGLTATLvREDdKI~DLNFLIGPK-lYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~ 512 (776)
T KOG1123|consen 436 A-KMFRRVLSIVQA-HCKLGLTATLVREDDKITDLNFLIGPK-LYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLR 512 (776)
T ss_pred H-HHHHHHHHHHHH-HhhccceeEEeeccccccccceeecch-hhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHh
Confidence 3 334444433322 2357889998543221111 1222221 0000000000 00011111112211
Q ss_pred ------------hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeee--ecCCCHHHHHHHH
Q 008235 410 ------------DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIST--GSNCIVSHIKNSV 475 (573)
Q Consensus 410 ------------~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~l~~F 475 (573)
...|+..- ++|-.+-.. .+.++|||..+.-.....+-.| |-+..+ ..+.+|-++|+.|
T Consensus 513 ~~t~kr~lLyvMNP~KFraC-qfLI~~HE~----RgDKiIVFsDnvfALk~YAikl---~KpfIYG~Tsq~ERm~ILqnF 584 (776)
T KOG1123|consen 513 ENTRKRMLLYVMNPNKFRAC-QFLIKFHER----RGDKIIVFSDNVFALKEYAIKL---GKPFIYGPTSQNERMKILQNF 584 (776)
T ss_pred hhhhhhheeeecCcchhHHH-HHHHHHHHh----cCCeEEEEeccHHHHHHHHHHc---CCceEECCCchhHHHHHHHhc
Confidence 13455433 333333332 2579999998876666655544 333331 2345777899999
Q ss_pred HhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCC-CCHHHHHHHHhccccCCC---cc---eEEEEeccc--cHHHHHH
Q 008235 476 EADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFI-ISMKNYVEILTSMARHTV---SG---ILHSFFTKD--DAAHAGQ 546 (573)
Q Consensus 476 ~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P-~s~~~YiqR~GR~gR~g~---~G---~~i~~~~~~--d~~~~~~ 546 (573)
.-+.+.+.|.. .-|.+ ..+|+|+.+++|+..-- .|...=.||.||.-|+.+ .+ .-+++++.+ |+.+-.+
T Consensus 585 q~n~~vNTIFl-SKVgD-tSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStK 662 (776)
T KOG1123|consen 585 QTNPKVNTIFL-SKVGD-TSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTK 662 (776)
T ss_pred ccCCccceEEE-eeccC-ccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhh
Confidence 33334433322 23443 47999999999987643 567788999999998753 23 345555544 4444444
Q ss_pred HHHHHHH
Q 008235 547 MIEILEQ 553 (573)
Q Consensus 547 l~~~l~~ 553 (573)
-.++|-.
T Consensus 663 RQ~FLid 669 (776)
T KOG1123|consen 663 RQQFLID 669 (776)
T ss_pred hhhhhhh
Confidence 4445544
No 140
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.32 E-value=5.2e-12 Score=101.58 Aligned_cols=73 Identities=19% Similarity=0.134 Sum_probs=62.1
Q ss_pred HHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhcccc
Q 008235 451 STLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMAR 525 (573)
Q Consensus 451 ~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR 525 (573)
.+|...++.+..+ ||+ +..+++.| +++...+|++ +++. .+|+|+|++++||+|++|.+...|+|++||+||
T Consensus 1 ~~L~~~~~~~~~i-~~~~~~~~r~~~~~~f-~~~~~~vli~-t~~~-~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R 76 (78)
T PF00271_consen 1 KFLEKKGIKVAII-HGDMSQKERQEILKKF-NSGEIRVLIA-TDIL-GEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGR 76 (78)
T ss_dssp HHHHHTTSSEEEE-STTSHHHHHHHHHHHH-HTTSSSEEEE-SCGG-TTSSTSTTESEEEESSSESSHHHHHHHHTTSST
T ss_pred CChHHCCCcEEEE-ECCCCHHHHHHHHHHh-hccCceEEEe-eccc-cccccccccccccccccCCCHHHHHHHhhcCCC
Confidence 3678899999874 764 34589999 8888887766 4666 379999999999999999999999999999999
Q ss_pred CC
Q 008235 526 HT 527 (573)
Q Consensus 526 ~g 527 (573)
.|
T Consensus 77 ~g 78 (78)
T PF00271_consen 77 IG 78 (78)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 141
>COG4889 Predicted helicase [General function prediction only]
Probab=99.30 E-value=1.1e-11 Score=133.74 Aligned_cols=333 Identities=11% Similarity=0.074 Sum_probs=177.7
Q ss_pred CCHHHHHHHHHHhcC-----CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHh
Q 008235 203 VNSWGIEFWKCYSSA-----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (573)
Q Consensus 203 ~t~iQ~~aip~il~g-----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~ 277 (573)
+.|.|+.|+...++| |--|+.| .| +|||+.. |-+.+.+.. .++|+|||+..|..|..+...
T Consensus 162 ~R~hQq~Aid~a~~~F~~n~RGkLIMA-cG-TGKTfTs-LkisEala~-----------~~iL~LvPSIsLLsQTlrew~ 227 (1518)
T COG4889 162 PRPHQQTAIDAAKEGFSDNDRGKLIMA-CG-TGKTFTS-LKISEALAA-----------ARILFLVPSISLLSQTLREWT 227 (1518)
T ss_pred CChhHHHHHHHHHhhcccccCCcEEEe-cC-CCccchH-HHHHHHHhh-----------hheEeecchHHHHHHHHHHHh
Confidence 499999999999876 3334444 57 8899985 445555543 479999999999999998887
Q ss_pred hhhcCCcEEEEeCCCCCHHHH-----------------------HHHh-hcCCCcEEEeCHHHHHHHHHcCCCCCCCccE
Q 008235 278 PLKAFGIHTVSLHPGAAIDHQ-----------------------ITGL-RSCEPEFLVSTPERLLKLVSLKAIDVSGVSL 333 (573)
Q Consensus 278 ~l~~~~i~~~~~~gg~~~~~~-----------------------~~~l-~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~ 333 (573)
.-+.+.++...++......+- +... +..+--||++|-..|...-.....-+..+++
T Consensus 228 ~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDl 307 (1518)
T COG4889 228 AQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDL 307 (1518)
T ss_pred hccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccE
Confidence 766667766665554321111 1111 1124567888877665544444455788999
Q ss_pred EEEeCcccccC---cchHHHHHHhcC-----CCCcEEEEeccCC---ccHH-----------------------------
Q 008235 334 LVVDRLDSLSK---GDTLSLIRQSIS-----GKPHTVVFNDCLT---YTSV----------------------------- 373 (573)
Q Consensus 334 lViDEad~ll~---~~~l~~Il~~l~-----~~~q~l~~SAT~~---~~~~----------------------------- 373 (573)
+|.||||+... ...=..-+..+. +....+.++||.. ....
T Consensus 308 iicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~Fg 387 (1518)
T COG4889 308 IICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFG 387 (1518)
T ss_pred EEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHH
Confidence 99999999766 111111111111 1123455666632 1111
Q ss_pred -HHHHHHhcCC-ceEEEcCCCccccccceEEEEEEcCChhHHHHHH---HHHHHHHhccCC-----------CCCCCcEE
Q 008235 374 -PAVQNLLLGS-INRLSLNQSVASQSACIIQSVNVCASDEEKILKG---IQVLDHAYGDHF-----------HSEPLKVL 437 (573)
Q Consensus 374 -~~~~~~l~~~-~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l---~~~L~~~~~~~~-----------~~~~~k~l 437 (573)
.+.+.+|.+. +.++.++.. .... .-+....-.+..-.++-. .-...-+.+.+. ..+-.++|
T Consensus 388 eAv~rdlLTDYKVmvlaVd~~--~i~~-~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAI 464 (1518)
T COG4889 388 EAVERDLLTDYKVMVLAVDKE--VIAG-VLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAI 464 (1518)
T ss_pred HHHHhhhhccceEEEEEechh--hhhh-hhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHH
Confidence 1112222222 111222211 1111 111111111111111111 111111111111 01235789
Q ss_pred EEecChhhHHHHHHHHHH-------------CCCCeeeecC--CCHHH--HHHHHH-----hcCCCCCeEEEEeccccCC
Q 008235 438 YIVGKDSKFQNLVSTLKC-------------KGYSISTGSN--CIVSH--IKNSVE-----ADGRKRPAVSMIDKDHIST 495 (573)
Q Consensus 438 IF~~s~~~~~~l~~~L~~-------------~g~~~~~~~~--~~~~~--~l~~F~-----~~g~~~~l~~lvd~~s~rG 495 (573)
-||.++++.+.+++.|.. .++.+.. .| |.|.. .++-.. .....+++.. .-+.+ .|
T Consensus 465 aF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi-~HvDGtmNal~R~~l~~l~~~~~~neckIlSN-aRcLS-EG 541 (1518)
T COG4889 465 AFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISI-DHVDGTMNALERLDLLELKNTFEPNECKILSN-ARCLS-EG 541 (1518)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEe-ecccccccHHHHHHHHhccCCCCcchheeecc-chhhh-cC
Confidence 999999988888766532 2444443 33 44432 111110 1111122111 12332 49
Q ss_pred CccCCCCEEEeCCCCCCHHHHHHHHhccccCC---CcceEEEEec-c------------ccHHHHHHHHHHHHHcC
Q 008235 496 AELEEYEVVIVPDFIISMKNYVEILTSMARHT---VSGILHSFFT-K------------DDAAHAGQMIEILEQCG 555 (573)
Q Consensus 496 lDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g---~~G~~i~~~~-~------------~d~~~~~~l~~~l~~~~ 555 (573)
+|+|..+-||.|++-.+..+-+|-+||+-|-. .-|..|+=+. | .....+.++++.|+.+.
T Consensus 542 VDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnALRShD 617 (1518)
T COG4889 542 VDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKALRSHD 617 (1518)
T ss_pred CCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999964 2466665442 2 13345566666665544
No 142
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.30 E-value=5e-10 Score=114.46 Aligned_cols=300 Identities=12% Similarity=0.047 Sum_probs=167.5
Q ss_pred HHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHH-Hhhh-hcCC
Q 008235 206 WGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV-CKPL-KAFG 283 (573)
Q Consensus 206 iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~-~~~l-~~~~ 283 (573)
.+......+.+..-++++..|| ||||.-.--..++..... ...+..--|.|--|.++... ..++ -.+|
T Consensus 51 ~k~~F~~~l~~nQ~~v~vGetg-sGKttQiPq~~~~~~~~~---------~~~v~CTQprrvaamsva~RVadEMDv~lG 120 (699)
T KOG0925|consen 51 QKEEFLKLLLNNQIIVLVGETG-SGKTTQIPQFVLEYELSH---------LTGVACTQPRRVAAMSVAQRVADEMDVTLG 120 (699)
T ss_pred hHHHHHHHHhcCceEEEEecCC-CCccccCcHHHHHHHHhh---------ccceeecCchHHHHHHHHHHHHHHhccccc
Confidence 3444566667778888899999 999965322233333322 22456666888888887743 3444 1112
Q ss_pred cEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-cchHHHHHHhc---CCCC
Q 008235 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSI---SGKP 359 (573)
Q Consensus 284 i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l---~~~~ 359 (573)
-.|+..+.-.+-......| =++|-|.|+.-... .-.+.+..+||+||||.-.- .+-+..+++.. +++.
T Consensus 121 ~EVGysIrfEdC~~~~T~L-------ky~tDgmLlrEams-~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdL 192 (699)
T KOG0925|consen 121 EEVGYSIRFEDCTSPNTLL-------KYCTDGMLLREAMS-DPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDL 192 (699)
T ss_pred hhccccccccccCChhHHH-------HHhcchHHHHHHhh-CcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCc
Confidence 2221111000000000001 12344444332222 23478899999999995222 33333333322 3688
Q ss_pred cEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEE
Q 008235 360 HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYI 439 (573)
Q Consensus 360 q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF 439 (573)
.++++|||+.. ..+ +.|+.++. .+.+... ..++- ++.-+.+.+.++..+..+-++..... .+-+|||
T Consensus 193 k~vvmSatl~a--~Kf-q~yf~n~P-ll~vpg~-----~PvEi-~Yt~e~erDylEaairtV~qih~~ee---~GDilvF 259 (699)
T KOG0925|consen 193 KLVVMSATLDA--EKF-QRYFGNAP-LLAVPGT-----HPVEI-FYTPEPERDYLEAAIRTVLQIHMCEE---PGDILVF 259 (699)
T ss_pred eEEEeecccch--HHH-HHHhCCCC-eeecCCC-----CceEE-EecCCCChhHHHHHHHHHHHHHhccC---CCCEEEE
Confidence 99999999863 344 44555443 4555532 12333 33333356666666666555555444 6899999
Q ss_pred ecChhhHHHHHHHHHHC----C-----CCeeeecCCCHHHH-HHH--HHhcCCC-CCeEEEEeccccCCCccCCCCEEEe
Q 008235 440 VGKDSKFQNLVSTLKCK----G-----YSISTGSNCIVSHI-KNS--VEADGRK-RPAVSMIDKDHISTAELEEYEVVIV 506 (573)
Q Consensus 440 ~~s~~~~~~l~~~L~~~----g-----~~~~~~~~~~~~~~-l~~--F~~~g~~-~~l~~lvd~~s~rGlDip~v~~VI~ 506 (573)
....++.+..++.+... + +.+..+ +-..++. ++- ..++|.. +.++..+..+. ..+-|++|.+||.
T Consensus 260 LtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PL-yP~~qq~iFep~p~~~~~~~~RkvVvstniae-tsltidgiv~VID 337 (699)
T KOG0925|consen 260 LTGEEEIEDACRKISREVDNLGPQVGPLKVVPL-YPAQQQRIFEPAPEKRNGAYGRKVVVSTNIAE-TSLTIDGIVFVID 337 (699)
T ss_pred ecCHHHHHHHHHHHHHHHHhhccccCCceEEec-CchhhccccCCCCcccCCCccceEEEEecchh-eeeeeccEEEEec
Confidence 99998888777766532 2 233443 3322321 111 1122222 22222123332 3788999999998
Q ss_pred CCC------------------CCCHHHHHHHHhccccCCCcceEEEEeccc
Q 008235 507 PDF------------------IISMKNYVEILTSMARHTVSGILHSFFTKD 539 (573)
Q Consensus 507 ~d~------------------P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~ 539 (573)
-++ |-|-.+--||.||+|| .++|.|+.+|+++
T Consensus 338 pGf~kqkVYNPRIRvesllv~PISkasA~qR~gragr-t~pGkcfrLYte~ 387 (699)
T KOG0925|consen 338 PGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR-TRPGKCFRLYTEE 387 (699)
T ss_pred CchhhhcccCcceeeeeeeeccchHhHHHHHhhhccC-CCCCceEEeecHH
Confidence 665 4566788899999999 5799999999864
No 143
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=6e-09 Score=118.41 Aligned_cols=68 Identities=7% Similarity=0.046 Sum_probs=55.1
Q ss_pred CHHHHHHH----HHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 204 NSWGIEFW----KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 204 t~iQ~~ai----p~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.|.|.+.+ .++..|.++++.|||| +|||++.+.|+|......+ ..++++|.+.|..=..|+.++++.+
T Consensus 12 y~~Q~~~m~~v~~~l~~~~~~llEsPTG-tGKTlslL~~aL~~~~~~~-------~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 12 YPEQRSYMRDLKRSLDRGDEAILEMPSG-TGKTISLLSLILAYQQEKP-------EVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CHHHHHHHHHHHHHhccCCceEEeCCCC-CCccHHHHHHHHHHHHhcc-------ccccEEEEcccchHHHHHHHHHHhh
Confidence 78888855 4556689999999999 9999999999998766432 2468899999988888888888774
No 144
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=8.4e-10 Score=123.61 Aligned_cols=124 Identities=14% Similarity=0.051 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHH-HHHHHHhcCCCCCeEEEE
Q 008235 410 DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSH-IKNSVEADGRKRPAVSMI 488 (573)
Q Consensus 410 ~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~-~l~~F~~~g~~~~l~~lv 488 (573)
...|+..+.+-+...... +.|+||-+.|+...+.|+.+|...|++..++ +....+ --+=..+.|+.+.+..-|
T Consensus 610 ~~eK~~Aii~ei~~~~~~-----GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VL-NAK~h~~EAeIVA~AG~~GaVTIAT 683 (1112)
T PRK12901 610 KREKYNAVIEEITELSEA-----GRPVLVGTTSVEISELLSRMLKMRKIPHNVL-NAKLHQKEAEIVAEAGQPGTVTIAT 683 (1112)
T ss_pred HHHHHHHHHHHHHHHHHC-----CCCEEEEeCcHHHHHHHHHHHHHcCCcHHHh-hccchhhHHHHHHhcCCCCcEEEec
Confidence 577888888888777654 4699999999999999999999999987654 332211 111122578887775546
Q ss_pred eccccCCCccC---CC-----CEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEecccc
Q 008235 489 DKDHISTAELE---EY-----EVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDD 540 (573)
Q Consensus 489 d~~s~rGlDip---~v-----~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d 540 (573)
+.+. ||.||. +| =|||--..|.|..---|-.||+||-|.+|.+-.|++-+|
T Consensus 684 NMAG-RGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 684 NMAG-RGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred cCcC-CCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 7775 899996 23 389999999999999999999999999999999988654
No 145
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.21 E-value=2.4e-09 Score=118.96 Aligned_cols=128 Identities=12% Similarity=0.033 Sum_probs=91.1
Q ss_pred CCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCC-cEEEEeCCCCCHH---HHHH
Q 008235 225 GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAID---HQIT 300 (573)
Q Consensus 225 ~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~-i~~~~~~gg~~~~---~~~~ 300 (573)
.+| ||||.+|+--+ ...+. .|..+|||+|...|+.|+...++.. ++ -.++.++++.+.. ..+.
T Consensus 168 ~~G-SGKTevyl~~i-~~~l~---------~Gk~vLvLvPEi~lt~q~~~rl~~~--f~~~~v~~lhS~l~~~~R~~~w~ 234 (665)
T PRK14873 168 LPG-EDWARRLAAAA-AATLR---------AGRGALVVVPDQRDVDRLEAALRAL--LGAGDVAVLSAGLGPADRYRRWL 234 (665)
T ss_pred CCC-CcHHHHHHHHH-HHHHH---------cCCeEEEEecchhhHHHHHHHHHHH--cCCCcEEEECCCCCHHHHHHHHH
Confidence 359 99999986544 44443 3668999999999999999998874 24 5678888887754 3445
Q ss_pred HhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC------cchHHHHHHh--cCCCCcEEEEeccCCccH
Q 008235 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK------GDTLSLIRQS--ISGKPHTVVFNDCLTYTS 372 (573)
Q Consensus 301 ~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~------~~~l~~Il~~--l~~~~q~l~~SAT~~~~~ 372 (573)
.+.++.+.|+|||-..+ ...+.++.+|||||=|.-.- ....+.+.-. -..+..+++.|||.+-+.
T Consensus 235 ~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles 307 (665)
T PRK14873 235 AVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEA 307 (665)
T ss_pred HHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHH
Confidence 56676799999995433 24678999999999985432 2233333222 135788999999977443
No 146
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.16 E-value=5e-10 Score=113.22 Aligned_cols=75 Identities=15% Similarity=0.023 Sum_probs=59.1
Q ss_pred CCCCCHHHHH----HHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHH
Q 008235 200 PLFVNSWGIE----FWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (573)
Q Consensus 200 ~~~~t~iQ~~----aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~ 275 (573)
|+.++|.|.+ ++..+..|.++++.|||| +|||++|++|++.++....... .+.+++|+++|..+..|....
T Consensus 6 Py~~r~~Q~~~m~~v~~~~~~~~~~~~eapTG-tGKTl~~L~~al~~~~~~~~~~----~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 6 PYEPYPIQYEFMEELKRVLDRGKIGILESPTG-TGKTLSLLCLTLTWLRSFPERI----QKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCC-cchhHHHHHHHHHHHHhCcccc----cccceeEEeccHHHHHHHHHH
Confidence 4666999999 556667789999999999 9999999999998876543110 234899999999998887766
Q ss_pred Hhhh
Q 008235 276 CKPL 279 (573)
Q Consensus 276 ~~~l 279 (573)
++++
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 6553
No 147
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.16 E-value=5e-10 Score=113.22 Aligned_cols=75 Identities=15% Similarity=0.023 Sum_probs=59.1
Q ss_pred CCCCCHHHHH----HHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHH
Q 008235 200 PLFVNSWGIE----FWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (573)
Q Consensus 200 ~~~~t~iQ~~----aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~ 275 (573)
|+.++|.|.+ ++..+..|.++++.|||| +|||++|++|++.++....... .+.+++|+++|..+..|....
T Consensus 6 Py~~r~~Q~~~m~~v~~~~~~~~~~~~eapTG-tGKTl~~L~~al~~~~~~~~~~----~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 6 PYEPYPIQYEFMEELKRVLDRGKIGILESPTG-TGKTLSLLCLTLTWLRSFPERI----QKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCC-cchhHHHHHHHHHHHHhCcccc----cccceeEEeccHHHHHHHHHH
Confidence 4666999999 556667789999999999 9999999999998876543110 234899999999998887766
Q ss_pred Hhhh
Q 008235 276 CKPL 279 (573)
Q Consensus 276 ~~~l 279 (573)
++++
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 6553
No 148
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.12 E-value=5.1e-08 Score=105.50 Aligned_cols=326 Identities=11% Similarity=0.028 Sum_probs=191.2
Q ss_pred CCHHHHHHHHHHh----cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 203 VNSWGIEFWKCYS----SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 203 ~t~iQ~~aip~il----~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
+.|+|+..+.-+. ++.--|+--.-| -|||.-. +..|..|..... -...+|||||. .+..|+..++..
T Consensus 206 Lf~yQreGV~WL~~L~~q~~GGILgDeMG-LGKTIQi-isFLaaL~~S~k------~~~paLIVCP~-Tii~qW~~E~~~ 276 (923)
T KOG0387|consen 206 LFPYQREGVQWLWELYCQRAGGILGDEMG-LGKTIQI-ISFLAALHHSGK------LTKPALIVCPA-TIIHQWMKEFQT 276 (923)
T ss_pred hhHHHHHHHHHHHHHHhccCCCeeccccc-CccchhH-HHHHHHHhhccc------ccCceEEEccH-HHHHHHHHHHHH
Confidence 3889999876654 345556677889 9999642 222333332211 12469999996 466788888877
Q ss_pred hhcCCcEEEEeCCCCCHH--------HHHHH-hhc---CCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-c
Q 008235 279 LKAFGIHTVSLHPGAAID--------HQITG-LRS---CEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-G 345 (573)
Q Consensus 279 l~~~~i~~~~~~gg~~~~--------~~~~~-l~~---~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-~ 345 (573)
+.. .+++..++|-.+.. ..... |.+ .+..|+|+|-..+. +....+.-..-+++|+||.|++-. -
T Consensus 277 w~p-~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r--~~~d~l~~~~W~y~ILDEGH~IrNpn 353 (923)
T KOG0387|consen 277 WWP-PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR--IQGDDLLGILWDYVILDEGHRIRNPN 353 (923)
T ss_pred hCc-ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc--ccCcccccccccEEEecCcccccCCc
Confidence 633 57777777654410 01111 111 14579999955431 111122223467999999999987 5
Q ss_pred chHHHHHHhcCCCCcEEEEeccCC-ccHHHHHHHH-hc-------------CCceEEEcCCCcccc--------------
Q 008235 346 DTLSLIRQSISGKPHTVVFNDCLT-YTSVPAVQNL-LL-------------GSINRLSLNQSVASQ-------------- 396 (573)
Q Consensus 346 ~~l~~Il~~l~~~~q~l~~SAT~~-~~~~~~~~~~-l~-------------~~~~~i~~~~~~~~~-------------- 396 (573)
.++..-+..++. .+.+++|.|.= +.+.++-..| +. .....|.++...++.
T Consensus 354 s~islackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~L 432 (923)
T KOG0387|consen 354 SKISLACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVAL 432 (923)
T ss_pred cHHHHHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHH
Confidence 555555555543 34455566532 2222211110 00 000011111100000
Q ss_pred --------------------ccceEEEEEEc----------------------------------------C--------
Q 008235 397 --------------------SACIIQSVNVC----------------------------------------A-------- 408 (573)
Q Consensus 397 --------------------~~~i~~~~~~~----------------------------------------~-------- 408 (573)
.+.-...+++| +
T Consensus 433 r~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~ 512 (923)
T KOG0387|consen 433 RDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRR 512 (923)
T ss_pred HHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCc
Confidence 00000111111 1
Q ss_pred --------------ChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHH-HCCCCeeeecCC-----CH
Q 008235 409 --------------SDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLK-CKGYSISTGSNC-----IV 468 (573)
Q Consensus 409 --------------~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~-~~g~~~~~~~~~-----~~ 468 (573)
....|...+..+|..+.+.+ .++|+|..++.-..-|-..|. ..||....+ .| .|
T Consensus 513 ~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg-----~rvllFsqs~~mLdilE~fL~~~~~ysylRm-DGtT~~~~R 586 (923)
T KOG0387|consen 513 DEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQG-----DRVLLFSQSRQMLDILESFLRRAKGYSYLRM-DGTTPAALR 586 (923)
T ss_pred ccccccCCCcCCChhhcchHHHHHHHHHHHhhCC-----CEEEEehhHHHHHHHHHHHHHhcCCceEEEe-cCCCccchh
Confidence 12347777888888877654 499999999999999988888 578988864 44 56
Q ss_pred HHHHHHHHhcCCCCCeEEEEeccccC--CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcc--eEEEEeccc---cH
Q 008235 469 SHIKNSVEADGRKRPAVSMIDKDHIS--TAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSG--ILHSFFTKD---DA 541 (573)
Q Consensus 469 ~~~l~~F~~~g~~~~l~~lvd~~s~r--GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G--~~i~~~~~~---d~ 541 (573)
...+++| .++..-.+.. . +|-+. |+++...+-||.||+-.++.+=.|-.-|+=|.|++- .+|-|++.. |.
T Consensus 587 ~~lVd~F-ne~~s~~VFL-L-TTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEk 663 (923)
T KOG0387|consen 587 QKLVDRF-NEDESIFVFL-L-TTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEK 663 (923)
T ss_pred hHHHHhh-cCCCceEEEE-E-EecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHH
Confidence 7789999 4343333333 3 33233 899999999999999999999999989999999753 345556654 55
Q ss_pred HHHHHHHHH
Q 008235 542 AHAGQMIEI 550 (573)
Q Consensus 542 ~~~~~l~~~ 550 (573)
-+.+++.+.
T Consensus 664 iY~rQI~Kq 672 (923)
T KOG0387|consen 664 IYHRQIFKQ 672 (923)
T ss_pred HHHHHHHHH
Confidence 556665543
No 149
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.11 E-value=2.8e-08 Score=102.10 Aligned_cols=323 Identities=10% Similarity=0.001 Sum_probs=182.1
Q ss_pred CHHHHHHHHHHhc-CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcC
Q 008235 204 NSWGIEFWKCYSS-AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~-g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~ 282 (573)
-|+|.+.+...++ |--+++.-.-| -|||+-.+.-+-.+... + -.||+||.. |---+.+.|..+-..
T Consensus 200 lPFQreGv~faL~RgGR~llADeMG-LGKTiQAlaIA~yyraE----------w-plliVcPAs-vrftWa~al~r~lps 266 (689)
T KOG1000|consen 200 LPFQREGVIFALERGGRILLADEMG-LGKTIQALAIARYYRAE----------W-PLLIVCPAS-VRFTWAKALNRFLPS 266 (689)
T ss_pred CchhhhhHHHHHhcCCeEEEecccc-cchHHHHHHHHHHHhhc----------C-cEEEEecHH-HhHHHHHHHHHhccc
Confidence 8899998877665 67788888999 99998754322222222 2 268899963 444566677666322
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC--cchHHHHHHhcCCCCc
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPH 360 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q 360 (573)
-..+..+.++.+.-.. +-. ...|.|.+-+.|..+ . ..+.-.....||+||.|.|-+ ......++..+..-..
T Consensus 267 ~~pi~vv~~~~D~~~~---~~t-~~~v~ivSye~ls~l-~-~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akh 340 (689)
T KOG1000|consen 267 IHPIFVVDKSSDPLPD---VCT-SNTVAIVSYEQLSLL-H-DILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKH 340 (689)
T ss_pred ccceEEEecccCCccc---ccc-CCeEEEEEHHHHHHH-H-HHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhh
Confidence 2224444454432211 111 245777776654322 1 112234478999999998876 4445555555555567
Q ss_pred EEEEeccCC-------------------ccHHHHHHHHhcCCceEEEcC--CC-----------------------cccc
Q 008235 361 TVVFNDCLT-------------------YTSVPAVQNLLLGSINRLSLN--QS-----------------------VASQ 396 (573)
Q Consensus 361 ~l~~SAT~~-------------------~~~~~~~~~~l~~~~~~i~~~--~~-----------------------~~~~ 396 (573)
++++|.|.. +...+++.+|.......+..+ .. -...
T Consensus 341 vILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qL 420 (689)
T KOG1000|consen 341 VILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQL 420 (689)
T ss_pred eEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 888888742 223344444443211011111 00 0011
Q ss_pred ccceEEEEEEcCCh---------------------h---------------HHHHHHHHHHHH--HhccCCCCCCCcEEE
Q 008235 397 SACIIQSVNVCASD---------------------E---------------EKILKGIQVLDH--AYGDHFHSEPLKVLY 438 (573)
Q Consensus 397 ~~~i~~~~~~~~~~---------------------~---------------~k~~~l~~~L~~--~~~~~~~~~~~k~lI 438 (573)
++.-++.++.+... + .|...+.+.|.. ++-+ .+..+.+|
T Consensus 421 PpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d---~~~~KflV 497 (689)
T KOG1000|consen 421 PPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPD---APPRKFLV 497 (689)
T ss_pred CccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCccccc---CCCceEEE
Confidence 12222333333210 0 011112222221 1112 23689999
Q ss_pred EecChhhHHHHHHHHHHCCCCeeeecCC-----CHHHHHHHHHhcCCCCCeEEEEeccccC-CCccCCCCEEEeCCCCCC
Q 008235 439 IVGKDSKFQNLVSTLKCKGYSISTGSNC-----IVSHIKNSVEADGRKRPAVSMIDKDHIS-TAELEEYEVVIVPDFIIS 512 (573)
Q Consensus 439 F~~s~~~~~~l~~~L~~~g~~~~~~~~~-----~~~~~l~~F~~~g~~~~l~~lvd~~s~r-GlDip~v~~VI~~d~P~s 512 (573)
||.-..-.+.+...+...++....+ .| +|+-..+.| +.. ..+-++++.++.+. ||++...+.||...+|.+
T Consensus 498 FaHH~~vLd~Iq~~~~~r~vg~IRI-DGst~s~~R~ll~qsF-Q~s-eev~VAvlsItA~gvGLt~tAa~~VVFaEL~wn 574 (689)
T KOG1000|consen 498 FAHHQIVLDTIQVEVNKRKVGSIRI-DGSTPSHRRTLLCQSF-QTS-EEVRVAVLSITAAGVGLTLTAASVVVFAELHWN 574 (689)
T ss_pred EehhHHHHHHHHHHHHHcCCCeEEe-cCCCCchhHHHHHHHh-ccc-cceEEEEEEEeecccceeeeccceEEEEEecCC
Confidence 9999999999999999999988753 44 466688999 433 33434434455323 999999999999999998
Q ss_pred HHHHHHHHhccccCCCcce--EEEEeccc--cHHHHHHHHHHH
Q 008235 513 MKNYVEILTSMARHTVSGI--LHSFFTKD--DAAHAGQMIEIL 551 (573)
Q Consensus 513 ~~~YiqR~GR~gR~g~~G~--~i~~~~~~--d~~~~~~l~~~l 551 (573)
+.-.+|-=-|+-|-|++.. ++.|+... |..++..|.+-|
T Consensus 575 PgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 575 PGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred CceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 7666665555555554432 33344433 445555554444
No 150
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.03 E-value=3e-07 Score=101.70 Aligned_cols=157 Identities=10% Similarity=-0.002 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHhc---CC----c---EEEEeCCCchhHHHHHHHHHHHHHHhc-hhccCCCCCCcEEEEEcccHHHHHH
Q 008235 203 VNSWGIEFWKCYSS---AK----D---ILETSGSSSTIVQIAWIVATAADSIAR-KEKEGFSFTGPFLLFLVSSQEKAAK 271 (573)
Q Consensus 203 ~t~iQ~~aip~il~---g~----d---vl~~A~TG~SGKTlaf~lp~l~~l~~~-~~~~~~~~~~~~~Lil~PtreLa~Q 271 (573)
+.|.|.+.+.-+.. |. + .|+.=..| +|||+-. ++.+..++.. +.... .-.++|||+|. .|+.-
T Consensus 239 LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~G-lGKTlq~-IsflwtlLrq~P~~~~---~~~k~lVV~P~-sLv~n 312 (776)
T KOG0390|consen 239 LRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPG-LGKTLQC-ISFIWTLLRQFPQAKP---LINKPLVVAPS-SLVNN 312 (776)
T ss_pred cCchHHHHHHHHHhhhhcccccCCCCceEeeCCCC-cchHHHH-HHHHHHHHHhCcCccc---cccccEEEccH-HHHHH
Confidence 48899999876643 32 2 23333668 9999975 4445444443 21100 12578999995 68888
Q ss_pred HHHHHhhhhc-CCcEEEEeCCCCCH--HHHHHHhhc----CCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC
Q 008235 272 VRSVCKPLKA-FGIHTVSLHPGAAI--DHQITGLRS----CEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (573)
Q Consensus 272 i~~~~~~l~~-~~i~~~~~~gg~~~--~~~~~~l~~----~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~ 344 (573)
+++.|.++-. ..|....++|+... ..+...+.- ...-|++-+-+.+.+.+.. +....+++||+||.|++-.
T Consensus 313 WkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 313 WKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccc
Confidence 9988888744 47888888888763 111111111 1234667777766554433 4466789999999999876
Q ss_pred -cchHHHHHHhcCCCCcEEEEeccC
Q 008235 345 -GDTLSLIRQSISGKPHTVVFNDCL 368 (573)
Q Consensus 345 -~~~l~~Il~~l~~~~q~l~~SAT~ 368 (573)
...+...+..+.- +..|++|.|+
T Consensus 391 ~~s~~~kaL~~l~t-~rRVLLSGTp 414 (776)
T KOG0390|consen 391 SDSLTLKALSSLKT-PRRVLLTGTP 414 (776)
T ss_pred hhhHHHHHHHhcCC-CceEEeeCCc
Confidence 5555566666543 3456667775
No 151
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.02 E-value=1.6e-08 Score=111.36 Aligned_cols=287 Identities=9% Similarity=-0.006 Sum_probs=164.9
Q ss_pred cCCcE-EEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 216 SAKDI-LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 216 ~g~dv-l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
..+.+ ++.||.| ||||-+.+- .|...... .+.++|+|+..+.|+.++...++.....|+....-.++..
T Consensus 47 ~~~~V~vVRSpMG-TGKTtaLi~-wLk~~l~~--------~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~ 116 (824)
T PF02399_consen 47 QKRGVLVVRSPMG-TGKTTALIR-WLKDALKN--------PDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYI 116 (824)
T ss_pred CCCCeEEEECCCC-CCcHHHHHH-HHHHhccC--------CCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccc
Confidence 44555 5669999 999987543 33333222 3668999999999999999988765322333222222111
Q ss_pred HHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---------cchHHH-HHHhcCCCCcEEEE
Q 008235 295 IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---------GDTLSL-IRQSISGKPHTVVF 364 (573)
Q Consensus 295 ~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---------~~~l~~-Il~~l~~~~q~l~~ 364 (573)
+.....+-++.+.+.|+.+- .-.+.+.++|||||+..++. ..++.. +...+.....++++
T Consensus 117 -------i~~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~ 186 (824)
T PF02399_consen 117 -------IDGRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVM 186 (824)
T ss_pred -------ccccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEe
Confidence 11113567777777775543 23467789999999987776 112222 22334566789999
Q ss_pred eccCCccHHHHHHHHhcCCceEEEcCCCcccccc-------------------------------------ceEEEEEEc
Q 008235 365 NDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSA-------------------------------------CIIQSVNVC 407 (573)
Q Consensus 365 SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~-------------------------------------~i~~~~~~~ 407 (573)
-||+.....+++..+..+.-..+.++.-...... ......+.
T Consensus 187 DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 265 (824)
T PF02399_consen 187 DADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAIS- 265 (824)
T ss_pred cCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccc-
Confidence 9999999888888865433112222221000000 00000000
Q ss_pred CChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHHHHHHHHhcCCCCCeEEE
Q 008235 408 ASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSM 487 (573)
Q Consensus 408 ~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~l~~F~~~g~~~~l~~l 487 (573)
. +....+..++..+ .. +.++-||++|...++.+++.....+..+..+...+...-++.| ++.++++..
T Consensus 266 ~---~~~tF~~~L~~~L-~~-----gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~~W---~~~~VviYT 333 (824)
T PF02399_consen 266 N---DETTFFSELLARL-NA-----GKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVESW---KKYDVVIYT 333 (824)
T ss_pred c---chhhHHHHHHHHH-hC-----CCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccccccc---cceeEEEEe
Confidence 1 1112222233333 22 5688899999999999999988888788765332222233344 345565542
Q ss_pred EeccccCCCccCCC--CEEEeC--CCC--CCHHHHHHHHhccccCCCcceEEEEecc
Q 008235 488 IDKDHISTAELEEY--EVVIVP--DFI--ISMKNYVEILTSMARHTVSGILHSFFTK 538 (573)
Q Consensus 488 vd~~s~rGlDip~v--~~VI~~--d~P--~s~~~YiqR~GR~gR~g~~G~~i~~~~~ 538 (573)
. +-+ .|+++.+. +-|+-| ... .+..+..|.+||+-.-. ....+++++.
T Consensus 334 ~-~it-vG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 334 P-VIT-VGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred c-eEE-EEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 2 222 48888754 334444 222 46678999999975544 4455555554
No 152
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.02 E-value=1.4e-08 Score=114.61 Aligned_cols=172 Identities=12% Similarity=-0.010 Sum_probs=102.9
Q ss_pred CCccCCCCCCCHHHHHHHHHHhc--------CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEccc
Q 008235 194 GVEQDNPLFVNSWGIEFWKCYSS--------AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265 (573)
Q Consensus 194 g~~~p~~~~~t~iQ~~aip~il~--------g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 265 (573)
+|.++..-..+.||-.|+..+.. |-=++-.|.|| +|||++=+= |+..|... ..|.+..|-.-.
T Consensus 400 ~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTG-cGKT~aNAR-ImyaLsd~-------~~g~RfsiALGL 470 (1110)
T TIGR02562 400 YFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTG-CGKTLANAR-AMYALRDD-------KQGARFAIALGL 470 (1110)
T ss_pred hhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCC-cchHHHHHH-HHHHhCCC-------CCCceEEEEccc
Confidence 55554333457899999988764 22345559999 999998532 33333322 146788888888
Q ss_pred HHHHHHHHHHHhhhhcC-CcEEEEeCCCCCHHHHH-------------------------------------------HH
Q 008235 266 QEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQI-------------------------------------------TG 301 (573)
Q Consensus 266 reLa~Qi~~~~~~l~~~-~i~~~~~~gg~~~~~~~-------------------------------------------~~ 301 (573)
|.|..|+.+.++.--.+ .=..++++||....+-. ..
T Consensus 471 RTLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~ 550 (1110)
T TIGR02562 471 RSLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGR 550 (1110)
T ss_pred cceeccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhh
Confidence 88888888877663121 22334444443211100 00
Q ss_pred hhc-------CCCcEEEeCHHHHHHHHHc---CCCCCC----CccEEEEeCcccccC--cchHHHHHHhcC-CCCcEEEE
Q 008235 302 LRS-------CEPEFLVSTPERLLKLVSL---KAIDVS----GVSLLVVDRLDSLSK--GDTLSLIRQSIS-GKPHTVVF 364 (573)
Q Consensus 302 l~~-------~~~~IlV~TP~rL~~~l~~---~~~~l~----~l~~lViDEad~ll~--~~~l~~Il~~l~-~~~q~l~~ 364 (573)
+.+ -...|+|||+..++-.... +...+. .=..|||||+|.+-. ...|..++..+. -...++++
T Consensus 551 l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLm 630 (1110)
T TIGR02562 551 LSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLS 630 (1110)
T ss_pred hccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 110 0256999999998866522 121111 135799999996543 455555555332 45789999
Q ss_pred eccCCccHHH
Q 008235 365 NDCLTYTSVP 374 (573)
Q Consensus 365 SAT~~~~~~~ 374 (573)
|||+|+.+..
T Consensus 631 SATLP~~l~~ 640 (1110)
T TIGR02562 631 SATLPPALVK 640 (1110)
T ss_pred eCCCCHHHHH
Confidence 9999998554
No 153
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.99 E-value=3.6e-08 Score=110.97 Aligned_cols=313 Identities=14% Similarity=0.095 Sum_probs=184.4
Q ss_pred CCCHHHHHHHHH----HhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHh
Q 008235 202 FVNSWGIEFWKC----YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (573)
Q Consensus 202 ~~t~iQ~~aip~----il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~ 277 (573)
.+.++|...+.- +..+.++|..-.-| -|||+- -+..|..+...... .|| .||+||.-.+. -+.+.+.
T Consensus 370 ~LRdyQLeGlNWl~~~W~~~~n~ILADEmg-Lgktvq-ti~fl~~l~~~~~~-----~gp-flvvvplst~~-~W~~ef~ 440 (1373)
T KOG0384|consen 370 ELRDYQLEGLNWLLYSWYKRNNCILADEMG-LGKTVQ-TITFLSYLFHSLQI-----HGP-FLVVVPLSTIT-AWEREFE 440 (1373)
T ss_pred hhhhhhcccchhHHHHHHhcccceehhhcC-CCcchH-HHHHHHHHHHhhhc-----cCC-eEEEeehhhhH-HHHHHHH
Confidence 457788886554 45678999999999 999964 23333333332111 244 47778854443 3445555
Q ss_pred hhhcCCcEEEEeCCCCCHHHHHHHh---hcC-----CCcEEEeCHHHHHHHHHcCCCCCC--CccEEEEeCcccccC-cc
Q 008235 278 PLKAFGIHTVSLHPGAAIDHQITGL---RSC-----EPEFLVSTPERLLKLVSLKAIDVS--GVSLLVVDRLDSLSK-GD 346 (573)
Q Consensus 278 ~l~~~~i~~~~~~gg~~~~~~~~~l---~~~-----~~~IlV~TP~rL~~~l~~~~~~l~--~l~~lViDEad~ll~-~~ 346 (573)
.++ .+++++++|.......++.. ... .+++|++|-+.++. ..-.|+ .-.+++|||||+|-. ..
T Consensus 441 ~w~--~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~Lk----Dk~~L~~i~w~~~~vDeahrLkN~~~ 514 (1373)
T KOG0384|consen 441 TWT--DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLK----DKAELSKIPWRYLLVDEAHRLKNDES 514 (1373)
T ss_pred HHh--hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhc----cHhhhccCCcceeeecHHhhcCchHH
Confidence 554 78888888877655443322 221 48999999776632 111233 346899999999986 44
Q ss_pred hHHHHHHhcCCCCcEEEEeccC-CccHHHHHHHH-hcCCceEEEc--------------------------------CCC
Q 008235 347 TLSLIRQSISGKPHTVVFNDCL-TYTSVPAVQNL-LLGSINRLSL--------------------------------NQS 392 (573)
Q Consensus 347 ~l~~Il~~l~~~~q~l~~SAT~-~~~~~~~~~~~-l~~~~~~i~~--------------------------------~~~ 392 (573)
.+-..+..+.-+.. ++.+.|. -+.+.++...+ +-.|- .+.. .+.
T Consensus 515 ~l~~~l~~f~~~~r-llitgTPlQNsikEL~sLl~Fl~P~-kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdv 592 (1373)
T KOG0384|consen 515 KLYESLNQFKMNHR-LLITGTPLQNSLKELWSLLHFLMPG-KFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDV 592 (1373)
T ss_pred HHHHHHHHhcccce-eeecCCCccccHHHHHHHhcccCCC-CCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhh
Confidence 55555655554444 4555553 33344433211 00010 0000 000
Q ss_pred ccccccceEEEEEE------------------------------------------------cCChhHHH----------
Q 008235 393 VASQSACIIQSVNV------------------------------------------------CASDEEKI---------- 414 (573)
Q Consensus 393 ~~~~~~~i~~~~~~------------------------------------------------~~~~~~k~---------- 414 (573)
+-..++..++.+.+ ....++++
T Consensus 593 ekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d 672 (1373)
T KOG0384|consen 593 EKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRD 672 (1373)
T ss_pred ccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchH
Confidence 00111111111110 11111111
Q ss_pred -------------HHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCC-----CHHHHHHHHH
Q 008235 415 -------------LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC-----IVSHIKNSVE 476 (573)
Q Consensus 415 -------------~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~-----~~~~~l~~F~ 476 (573)
..|-.+|-.+.. .+.+||||..=....+-|+++|...+++...+ .| -|.++++.|.
T Consensus 673 ~~L~~lI~sSGKlVLLDKLL~rLk~-----~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRL-DGsvrgelRq~AIDhFn 746 (1373)
T KOG0384|consen 673 EALQALIQSSGKLVLLDKLLPRLKE-----GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRL-DGSVRGELRQQAIDHFN 746 (1373)
T ss_pred HHHHHHHHhcCcEEeHHHHHHHHhc-----CCceEEEhHHHHHHHHHHHHHHHHcCCcceec-cCCcchHHHHHHHHhcc
Confidence 111122222222 24699999999999999999999999998864 44 3567999995
Q ss_pred hcCCCCCeEEEEeccccC--CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcc--eEEEEeccc
Q 008235 477 ADGRKRPAVSMIDKDHIS--TAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSG--ILHSFFTKD 539 (573)
Q Consensus 477 ~~g~~~~l~~lvd~~s~r--GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G--~~i~~~~~~ 539 (573)
..+.... |.|. .|-|. ||++-..+.||.||--.++..=+|-..||-|-|++- .+|-|++.+
T Consensus 747 ap~SddF-vFLL-STRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 747 APDSDDF-VFLL-STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred CCCCCce-EEEE-ecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 5554444 4444 34344 899999999999999999998999989999988754 467788875
No 154
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.99 E-value=2.5e-09 Score=94.18 Aligned_cols=133 Identities=8% Similarity=-0.013 Sum_probs=80.3
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHH
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID 296 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~ 296 (573)
|.=.++-..+| +|||--.+--++..... .+.++|||.|||.++..+++.++.. .+++..-.-+..
T Consensus 4 g~~~~~d~hpG-aGKTr~vlp~~~~~~i~---------~~~rvLvL~PTRvva~em~~aL~~~---~~~~~t~~~~~~-- 68 (148)
T PF07652_consen 4 GELTVLDLHPG-AGKTRRVLPEIVREAIK---------RRLRVLVLAPTRVVAEEMYEALKGL---PVRFHTNARMRT-- 68 (148)
T ss_dssp TEEEEEE--TT-SSTTTTHHHHHHHHHHH---------TT--EEEEESSHHHHHHHHHHTTTS---SEEEESTTSS----
T ss_pred CceeEEecCCC-CCCcccccHHHHHHHHH---------ccCeEEEecccHHHHHHHHHHHhcC---CcccCceeeecc--
Confidence 44456778999 99998755444444443 4779999999999999888887755 444433221110
Q ss_pred HHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcc--hHHHHHHhc--CCCCcEEEEeccCCccH
Q 008235 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGD--TLSLIRQSI--SGKPHTVVFNDCLTYTS 372 (573)
Q Consensus 297 ~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~--~l~~Il~~l--~~~~q~l~~SAT~~~~~ 372 (573)
. .++--|-|.|-+.+...+.+ ...+.+.+++|+||||- .|.. ..+..+..+ .....++++|||.|-..
T Consensus 69 -----~-~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~-~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 69 -----H-FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHF-TDPTSIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp --------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred -----c-cCCCcccccccHHHHHHhcC-cccccCccEEEEecccc-CCHHHHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 0 12456888999988887766 55678999999999994 5511 122222222 23467999999998653
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.96 E-value=1.5e-09 Score=87.49 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=61.2
Q ss_pred HHHHHHHHCCCCeeeecCC-----CHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhc
Q 008235 448 NLVSTLKCKGYSISTGSNC-----IVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTS 522 (573)
Q Consensus 448 ~l~~~L~~~g~~~~~~~~~-----~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR 522 (573)
.++..|...++.+..+ || ++...++.| +++...++++ +++. ..|+|+|++++||.+++|.+...|+|++||
T Consensus 2 ~l~~~l~~~~~~~~~~-~~~~~~~~r~~~~~~f-~~~~~~vli~-t~~~-~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR 77 (82)
T smart00490 2 ELAELLKELGIKVARL-HGGLSQEEREEILEKF-NNGKIKVLVA-TDVA-ERGLDLPGVDLVIIYDLPWSPASYIQRIGR 77 (82)
T ss_pred HHHHHHHHCCCeEEEE-ECCCCHHHHHHHHHHH-HcCCCeEEEE-CChh-hCCcChhcCCEEEEeCCCCCHHHHHHhhcc
Confidence 4677888888888764 66 345589999 7777755544 4455 369999999999999999999999999999
Q ss_pred cccCC
Q 008235 523 MARHT 527 (573)
Q Consensus 523 ~gR~g 527 (573)
++|.|
T Consensus 78 ~~R~g 82 (82)
T smart00490 78 AGRAG 82 (82)
T ss_pred cccCC
Confidence 99976
No 156
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.92 E-value=5.4e-08 Score=105.15 Aligned_cols=118 Identities=15% Similarity=0.056 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCC-----CHHHHHHHHHhcCCCCCeEEE
Q 008235 413 KILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC-----IVSHIKNSVEADGRKRPAVSM 487 (573)
Q Consensus 413 k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~-----~~~~~l~~F~~~g~~~~l~~l 487 (573)
|+..|..+|..+... +.++|||..--.-.+-|-..|...++....+ .| +|+..++.| ++...+.+.|
T Consensus 762 K~r~L~~LLp~~k~~-----G~RVLiFSQFTqmLDILE~~L~~l~~~ylRL-DGsTqV~~RQ~lId~F--n~d~difVFL 833 (941)
T KOG0389|consen 762 KCRKLKELLPKIKKK-----GDRVLIFSQFTQMLDILEVVLDTLGYKYLRL-DGSTQVNDRQDLIDEF--NTDKDIFVFL 833 (941)
T ss_pred hHhHHHHHHHHHhhc-----CCEEEEeeHHHHHHHHHHHHHHhcCceEEee-cCCccchHHHHHHHhh--ccCCceEEEE
Confidence 444444455444333 4699999877777777777888889988875 44 578899999 5556666655
Q ss_pred EeccccC--CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCC--cceEEEEeccc
Q 008235 488 IDKDHIS--TAELEEYEVVIVPDFIISMKNYVEILTSMARHTV--SGILHSFFTKD 539 (573)
Q Consensus 488 vd~~s~r--GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~--~G~~i~~~~~~ 539 (573)
. .|-|. ||++...++||.||+-.++-.=.|---|+-|.|+ +=.++-|++..
T Consensus 834 L-STKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 834 L-STKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred E-eeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecC
Confidence 5 33244 8999999999999997665444444444445453 45677788876
No 157
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.84 E-value=1.3e-07 Score=93.45 Aligned_cols=139 Identities=11% Similarity=0.094 Sum_probs=100.7
Q ss_pred HHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc
Q 008235 184 NAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (573)
Q Consensus 184 ~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~ 263 (573)
.-++.+.+..-...| .+.|..++=.+..|+ |+...|| =|||++..+|++-..+ .|..+=|++
T Consensus 64 Al~rea~~r~~g~~p-----~~vQll~~l~L~~G~--laEm~TG-EGKTli~~l~a~~~AL----------~G~~V~vvT 125 (266)
T PF07517_consen 64 ALVREAARRTLGLRP-----YDVQLLGALALHKGR--LAEMKTG-EGKTLIAALPAALNAL----------QGKGVHVVT 125 (266)
T ss_dssp HHHHHHHHHHTS---------HHHHHHHHHHHTTS--EEEESTT-SHHHHHHHHHHHHHHT----------TSS-EEEEE
T ss_pred HHHHHHHHHHcCCcc-----cHHHHhhhhhcccce--eEEecCC-CCcHHHHHHHHHHHHH----------hcCCcEEEe
Confidence 334444444434455 999999998888777 8899999 9999999888876555 367899999
Q ss_pred ccHHHHHHHHHHHhhh-hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHH-HHHHcCC------CCCCCccEEE
Q 008235 264 SSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL-KLVSLKA------IDVSGVSLLV 335 (573)
Q Consensus 264 PtreLa~Qi~~~~~~l-~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~-~~l~~~~------~~l~~l~~lV 335 (573)
.+..||..=++++..+ ..+|+++.+++++.+....... - .++|+.+|...+. |.|+... ...+.+.++|
T Consensus 126 ~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~-Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~i 202 (266)
T PF07517_consen 126 SNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREA-Y--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAI 202 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHH-H--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEE
T ss_pred ccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHH-H--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEE
Confidence 9999999888888886 6679999999998875443222 2 4689999998874 5554422 1257899999
Q ss_pred EeCccccc
Q 008235 336 VDRLDSLS 343 (573)
Q Consensus 336 iDEad~ll 343 (573)
|||||.|+
T Consensus 203 vDEvDs~L 210 (266)
T PF07517_consen 203 VDEVDSIL 210 (266)
T ss_dssp ECTHHHHT
T ss_pred EeccceEE
Confidence 99999876
No 158
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.80 E-value=4.7e-08 Score=99.42 Aligned_cols=140 Identities=9% Similarity=-0.029 Sum_probs=85.6
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCH
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAI 295 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~ 295 (573)
.+..|++-.+| +|||+..+. ++..+....... ....+|||||. .+..|+..++..+.. ..+++..+.|+...
T Consensus 25 ~~g~lL~de~G-lGKT~~~i~-~~~~l~~~~~~~----~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~ 97 (299)
T PF00176_consen 25 PRGGLLADEMG-LGKTITAIA-LISYLKNEFPQR----GEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSER 97 (299)
T ss_dssp T-EEEE---TT-SSHHHHHHH-HHHHHHHCCTTS----S-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHH
T ss_pred CCCEEEEECCC-CCchhhhhh-hhhhhhhccccc----cccceeEeecc-chhhhhhhhhcccccccccccccccccccc
Confidence 47788889999 999988544 444444332110 11249999999 888999999999853 36777777766512
Q ss_pred HHHHHHhhcCCCcEEEeCHHHHH--------HHHHcCCCCCCCccEEEEeCcccccC-cchHHHHHHhcCCCCcEEEEec
Q 008235 296 DHQITGLRSCEPEFLVSTPERLL--------KLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSISGKPHTVVFND 366 (573)
Q Consensus 296 ~~~~~~l~~~~~~IlV~TP~rL~--------~~l~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l~~~~q~l~~SA 366 (573)
......... ..+++|+|.+.+. +.+.. -+.++|||||+|.+-+ .......+..+. ....+++||
T Consensus 98 ~~~~~~~~~-~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~~k~~~s~~~~~l~~l~-~~~~~lLSg 170 (299)
T PF00176_consen 98 RRLSKNQLP-KYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHRLKNKDSKRYKALRKLR-ARYRWLLSG 170 (299)
T ss_dssp HHTTSSSCC-CSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGGGTTTTSHHHHHHHCCC-ECEEEEE-S
T ss_pred ccccccccc-cceeeecccccccccccccccccccc-----ccceeEEEecccccccccccccccccccc-cceEEeecc
Confidence 222122222 5899999999887 22222 3488999999999966 444445555555 567888999
Q ss_pred cCCc
Q 008235 367 CLTY 370 (573)
Q Consensus 367 T~~~ 370 (573)
|.-.
T Consensus 171 TP~~ 174 (299)
T PF00176_consen 171 TPIQ 174 (299)
T ss_dssp S-SS
T ss_pred cccc
Confidence 9543
No 159
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.80 E-value=1.4e-07 Score=98.47 Aligned_cols=271 Identities=11% Similarity=0.052 Sum_probs=160.5
Q ss_pred CcE-EEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHH
Q 008235 218 KDI-LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID 296 (573)
Q Consensus 218 ~dv-l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~ 296 (573)
|.+ +-+.||- ||||-- +|+++... ..+++--|.|-||..|++.+.++ ||.+-.++|..-..
T Consensus 191 RkIi~H~GPTN-SGKTy~----ALqrl~~a----------ksGvycGPLrLLA~EV~~r~na~---gipCdL~TGeE~~~ 252 (700)
T KOG0953|consen 191 RKIIMHVGPTN-SGKTYR----ALQRLKSA----------KSGVYCGPLRLLAHEVYDRLNAL---GIPCDLLTGEERRF 252 (700)
T ss_pred heEEEEeCCCC-CchhHH----HHHHHhhh----------ccceecchHHHHHHHHHHHhhhc---CCCccccccceeee
Confidence 444 4557999 999965 56776643 36799999999999999988877 88877777743211
Q ss_pred HHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCccH
Q 008235 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTS 372 (573)
Q Consensus 297 ~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~ 372 (573)
..-. .+ .+..+-||-+.. . .-..+++.||||...|-| ...-+.++..........+ .+.+
T Consensus 253 ~~~~--~~-~a~hvScTVEM~----s----v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsv 316 (700)
T KOG0953|consen 253 VLDN--GN-PAQHVSCTVEMV----S----VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSV 316 (700)
T ss_pred cCCC--CC-cccceEEEEEEe----e----cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchH
Confidence 1100 00 255666664422 1 123478999999998888 4445555555443333222 2346
Q ss_pred HHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHH
Q 008235 373 VPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVST 452 (573)
Q Consensus 373 ~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~ 452 (573)
.++++.++...-..+.+...+...+ ..+. + .+..-|..+ +.+-+|| |-|++..-.+...
T Consensus 317 ldlV~~i~k~TGd~vev~~YeRl~p-------L~v~--~----~~~~sl~nl-------k~GDCvV-~FSkk~I~~~k~k 375 (700)
T KOG0953|consen 317 LDLVRKILKMTGDDVEVREYERLSP-------LVVE--E----TALGSLSNL-------KPGDCVV-AFSKKDIFTVKKK 375 (700)
T ss_pred HHHHHHHHhhcCCeeEEEeecccCc-------ceeh--h----hhhhhhccC-------CCCCeEE-EeehhhHHHHHHH
Confidence 6677776553211222221100000 0110 0 111222221 1344544 5578888888888
Q ss_pred HHHCCCC-eeeecCC-----CHHHHHHHHHhc--CCCCCeEEEEeccccCCCccCCCCEEEeCCCC---------CCHHH
Q 008235 453 LKCKGYS-ISTGSNC-----IVSHIKNSVEAD--GRKRPAVSMIDKDHISTAELEEYEVVIVPDFI---------ISMKN 515 (573)
Q Consensus 453 L~~~g~~-~~~~~~~-----~~~~~l~~F~~~--g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P---------~s~~~ 515 (573)
+...|.. +.+ +.| .+.+.-..| .+ +..+++++ .|+-. -||++ +|+.||.|++- -++..
T Consensus 376 IE~~g~~k~aV-IYGsLPPeTr~aQA~~F-Nd~~~e~dvlVA-sDAIG-MGLNL-~IrRiiF~sl~Kysg~e~~~it~sq 450 (700)
T KOG0953|consen 376 IEKAGNHKCAV-IYGSLPPETRLAQAALF-NDPSNECDVLVA-SDAIG-MGLNL-NIRRIIFYSLIKYSGRETEDITVSQ 450 (700)
T ss_pred HHHhcCcceEE-EecCCCCchhHHHHHHh-CCCCCccceEEe-ecccc-ccccc-ceeEEEEeecccCCcccceeccHHH
Confidence 8888776 444 454 355556677 33 45556544 34432 38887 68899988763 46778
Q ss_pred HHHHHhccccCCC---cceEEEEeccccHHHHHHHHH
Q 008235 516 YVEILTSMARHTV---SGILHSFFTKDDAAHAGQMIE 549 (573)
Q Consensus 516 YiqR~GR~gR~g~---~G~~i~~~~~~d~~~~~~l~~ 549 (573)
-.|.+||+||.|. .|.+.+|..+ |+..++.+.+
T Consensus 451 ikQIAGRAGRf~s~~~~G~vTtl~~e-DL~~L~~~l~ 486 (700)
T KOG0953|consen 451 IKQIAGRAGRFGSKYPQGEVTTLHSE-DLKLLKRILK 486 (700)
T ss_pred HHHHhhcccccccCCcCceEEEeeHh-hHHHHHHHHh
Confidence 8999999999984 5887777654 5655555443
No 160
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.73 E-value=7e-07 Score=99.24 Aligned_cols=124 Identities=10% Similarity=0.075 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~ 282 (573)
..+|.-.- +.....-++-..|| =||||+..+|+.-..+ .|-.+.+++..--||.--..++..+ ..+
T Consensus 82 ~dVQliG~--i~lh~g~iaEM~TG-EGKTL~atlp~ylnaL----------~gkgVhvVTvNdYLA~RDae~m~~l~~~L 148 (822)
T COG0653 82 FDVQLLGG--IVLHLGDIAEMRTG-EGKTLVATLPAYLNAL----------AGKGVHVVTVNDYLARRDAEWMGPLYEFL 148 (822)
T ss_pred hhHHHhhh--hhhcCCceeeeecC-CchHHHHHHHHHHHhc----------CCCCcEEeeehHHhhhhCHHHHHHHHHHc
Confidence 55665544 33334456678899 9999999999763333 3567888888888998888888776 557
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcC------CCCCCCccEEEEeCccccc
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLK------AIDVSGVSLLVVDRLDSLS 343 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~------~~~l~~l~~lViDEad~ll 343 (573)
|+++++...+++........ .+||..+|-..| .|.|..+ ...+..+.+-|+||+|.++
T Consensus 149 GlsvG~~~~~m~~~ek~~aY---~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 149 GLSVGVILAGMSPEEKRAAY---ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred CCceeeccCCCChHHHHHHH---hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 99999999998766554433 589999998776 2333222 1234578899999999764
No 161
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.61 E-value=1.4e-05 Score=93.23 Aligned_cols=140 Identities=11% Similarity=0.076 Sum_probs=93.1
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHH
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~ 297 (573)
+.-+++=-|| ||||++.. .+...+...+ ..|.++|||-.++|-.|+.+.+..++....... ...+...
T Consensus 274 ~~G~IWHtqG-SGKTlTm~-~~A~~l~~~~-------~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~ 341 (962)
T COG0610 274 KGGYIWHTQG-SGKTLTMF-KLARLLLELP-------KNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSE 341 (962)
T ss_pred CceEEEeecC-CchHHHHH-HHHHHHHhcc-------CCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHH
Confidence 4568888899 99999843 3333444331 578999999999999999999999855322222 3344444
Q ss_pred HHHHhhcCCCcEEEeCHHHHHHHHHcC-CCCCC-CccEEEEeCcccccCcchHHHHHHhcCCCCcEEEEeccCCc
Q 008235 298 QITGLRSCEPEFLVSTPERLLKLVSLK-AIDVS-GVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY 370 (573)
Q Consensus 298 ~~~~l~~~~~~IlV~TP~rL~~~l~~~-~~~l~-~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~l~~SAT~~~ 370 (573)
..+.|....-.|||+|-..+-..+... ...+. +=-.||+|||||-- ...+...+...-++...++||.|.-.
T Consensus 342 Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ-~G~~~~~~~~~~~~a~~~gFTGTPi~ 415 (962)
T COG0610 342 LKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ-YGELAKLLKKALKKAIFIGFTGTPIF 415 (962)
T ss_pred HHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc-ccHHHHHHHHHhccceEEEeeCCccc
Confidence 455565433479999988887776553 11122 22368899999866 33344444444455889999999643
No 162
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.58 E-value=9.1e-06 Score=91.95 Aligned_cols=324 Identities=12% Similarity=0.071 Sum_probs=182.8
Q ss_pred CHHHHHHHH--HHhcC--CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 204 NSWGIEFWK--CYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 204 t~iQ~~aip--~il~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
..+|++.+. .+++. -+-|.|---| -||||--+--+......++.. .......-.|||||. .|+--+..++.+|
T Consensus 977 RkYQqEGVnWLaFLnky~LHGILcDDMG-LGKTLQticilAsd~y~r~s~-~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 977 RKYQQEGVNWLAFLNKYKLHGILCDDMG-LGKTLQTICILASDHYKRRSE-SSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHhccHHHHHHHHhcccceeecccc-ccHHHHHHHHHHHHHHhhccc-chhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 557888644 44443 4668888999 999997544343333333111 111123348999995 6988888888888
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-cchHHHHHHhcCCC
Q 008235 280 KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSISGK 358 (573)
Q Consensus 280 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l~~~ 358 (573)
..+ +++....|+-......+.--+ +.+|+|++-+.+..-+.. +.-....|.|+||-|-|-. ...+....+.+..+
T Consensus 1054 ~pf-L~v~~yvg~p~~r~~lR~q~~-~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~ 1129 (1549)
T KOG0392|consen 1054 FPF-LKVLQYVGPPAERRELRDQYK-NANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRAN 1129 (1549)
T ss_pred cch-hhhhhhcCChHHHHHHHhhcc-ccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecchHHHHHHHHHHHhhc
Confidence 665 777777776554443333223 479999997665311100 1112345999999998877 55555556666544
Q ss_pred CcEEEEeccC-CccHHHHHHHH---hc--------------CCceEEEcCCC----------------------------
Q 008235 359 PHTVVFNDCL-TYTSVPAVQNL---LL--------------GSINRLSLNQS---------------------------- 392 (573)
Q Consensus 359 ~q~l~~SAT~-~~~~~~~~~~~---l~--------------~~~~~i~~~~~---------------------------- 392 (573)
.+ +++|.|. -+.+.++-..| |. .|+ .-..+..
T Consensus 1130 hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI-~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRl 1207 (1549)
T KOG0392|consen 1130 HR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPI-LASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRL 1207 (1549)
T ss_pred ce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchh-hhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44 4456663 22222221110 00 000 0000000
Q ss_pred ----ccccccceEEEEE-E------------------------------------------------cCC----------
Q 008235 393 ----VASQSACIIQSVN-V------------------------------------------------CAS---------- 409 (573)
Q Consensus 393 ----~~~~~~~i~~~~~-~------------------------------------------------~~~---------- 409 (573)
-...++.|.|-|+ . |++
T Consensus 1208 KedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp 1287 (1549)
T KOG0392|consen 1208 KEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHP 1287 (1549)
T ss_pred HHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcc
Confidence 0000011111110 0 000
Q ss_pred --------------------hhHHHHHHHHHHHHHhcc-CCC--------CCCCcEEEEecChhhHHHHHHHHHHCCCCe
Q 008235 410 --------------------DEEKILKGIQVLDHAYGD-HFH--------SEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (573)
Q Consensus 410 --------------------~~~k~~~l~~~L~~~~~~-~~~--------~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~ 460 (573)
...|+..|.++|...--. +.. -...|+||||.-+...+-+..-|.+...+.
T Consensus 1288 ~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mps 1367 (1549)
T KOG0392|consen 1288 DLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPS 1367 (1549)
T ss_pred hHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCc
Confidence 112444444444332110 000 124699999999999998887776654433
Q ss_pred ee-e-cC-----CCHHHHHHHHHhcCCCCCeEEEEeccccC--CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcce
Q 008235 461 ST-G-SN-----CIVSHIKNSVEADGRKRPAVSMIDKDHIS--TAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGI 531 (573)
Q Consensus 461 ~~-~-~~-----~~~~~~l~~F~~~g~~~~l~~lvd~~s~r--GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~ 531 (573)
++ + .. ++|..+.++|..+....++.. +|.+. ||++.+.+.||.++--.++-.=+|-.-||-|-|++-.
T Consensus 1368 VtymRLDGSVpp~~R~kiV~~FN~DptIDvLlL---TThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrv 1444 (1549)
T KOG0392|consen 1368 VTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLL---TTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRV 1444 (1549)
T ss_pred eeEEEecCCCCcHHHHHHHHHhcCCCceeEEEE---eeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCcee
Confidence 32 1 23 478899999944445666544 33334 9999999999999988887777899999999887644
Q ss_pred --EEEEeccc
Q 008235 532 --LHSFFTKD 539 (573)
Q Consensus 532 --~i~~~~~~ 539 (573)
++-|++..
T Consensus 1445 VNVyRlItrG 1454 (1549)
T KOG0392|consen 1445 VNVYRLITRG 1454 (1549)
T ss_pred eeeeeehhcc
Confidence 66677765
No 163
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.54 E-value=1.8e-05 Score=81.80 Aligned_cols=121 Identities=12% Similarity=-0.033 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEE
Q 008235 412 EKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVS 486 (573)
Q Consensus 412 ~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~ 486 (573)
.|++.|.+-|..+..... ..+.|||..--.-.+.+.-.|.+.|++++-+ .|. ++.+++.| ++. ..+-+.
T Consensus 620 TKIEAL~EEl~~l~~rd~---t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL-~GsMs~~ardatik~F-~nd-~~c~vf 693 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDR---TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKL-VGSMSPAARDATIKYF-KND-IDCRVF 693 (791)
T ss_pred hHHHHHHHHHHHHHHccc---chhhhhHHHHHHHHHHHHHHhhccCceEEEe-ccCCChHHHHHHHHHh-ccC-CCeEEE
Confidence 356666666666555544 5788999887777778888899999999875 443 45579999 332 222223
Q ss_pred EEeccccCC--CccCCCCEEEeCCCCCCHHHHHHHHhccccCC--CcceEEEEeccc
Q 008235 487 MIDKDHIST--AELEEYEVVIVPDFIISMKNYVEILTSMARHT--VSGILHSFFTKD 539 (573)
Q Consensus 487 lvd~~s~rG--lDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g--~~G~~i~~~~~~ 539 (573)
|+..- |.| |++-...+|+..|+-.++.-=.|---|.-|-| ++=.++.|+-++
T Consensus 694 LvSLk-AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 694 LVSLK-AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred EEEec-cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 44333 455 68888999999999887664444333433434 345677887665
No 164
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.45 E-value=2.7e-06 Score=94.47 Aligned_cols=118 Identities=10% Similarity=-0.004 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCC-----CHHHHHHHHHhcCCCCCeE
Q 008235 411 EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC-----IVSHIKNSVEADGRKRPAV 485 (573)
Q Consensus 411 ~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~-----~~~~~l~~F~~~g~~~~l~ 485 (573)
..|+..|-.+|-.+-.. +.++|.||.-..--.-+-.+|...++....+ .| ++...++.| ........+
T Consensus 709 sGKfELLDRiLPKLkat-----gHRVLlF~qMTrlmdimEdyL~~~~~kYlRL-DG~TK~~eRg~ll~~F-N~Pds~yf~ 781 (1157)
T KOG0386|consen 709 SGKFELLDRILPKLKAT-----GHRVLLFSQMTRLMDILEDYLQIREYKYLRL-DGQTKVEERGDLLEIF-NAPDSPYFI 781 (1157)
T ss_pred ccHHHHHHhhhHHHHhc-----CcchhhHHHHHHHHHHHHHHHhhhhhheeee-cCCcchhhHHHHHHHh-cCCCCceee
Confidence 35776666677666554 4599999988887888888888888877653 43 566789999 444444433
Q ss_pred EEEeccccC-CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEE
Q 008235 486 SMIDKDHIS-TAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSF 535 (573)
Q Consensus 486 ~lvd~~s~r-GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~ 535 (573)
.|..+-..+ |++..-.+.||.||.-.++....|+--|+-|.|..-.+-+|
T Consensus 782 FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~ 832 (1157)
T KOG0386|consen 782 FLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVL 832 (1157)
T ss_pred eeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeee
Confidence 333122112 89999999999999999999999999999888865544433
No 165
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.43 E-value=9.2e-06 Score=87.25 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCC-----CHHHHHHHHHhcCCCCCe
Q 008235 410 DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC-----IVSHIKNSVEADGRKRPA 484 (573)
Q Consensus 410 ~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~-----~~~~~l~~F~~~g~~~~l 484 (573)
..-|+..+++.++.++.... .+++|...=..-..-+...|...|+.... ++| +|..+++.|.. .+.+.-
T Consensus 727 ~S~Ki~~~l~~le~i~~~sk----eK~viVSQwtsvLniv~~hi~~~g~~y~s-i~Gqv~vK~Rq~iv~~FN~-~k~~~r 800 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSK----EKVVIVSQWTSVLNIVRKHIQKGGHIYTS-ITGQVLVKDRQEIVDEFNQ-EKGGAR 800 (901)
T ss_pred chhHHHHHHHHHHHHhhccc----ceeeehhHHHHHHHHHHHHHhhCCeeeee-ecCccchhHHHHHHHHHHh-ccCCce
Confidence 34577778888887744332 45555332222233445667777877765 466 57779999944 333333
Q ss_pred EEEEeccccC--CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceE--EEEecc
Q 008235 485 VSMIDKDHIS--TAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGIL--HSFFTK 538 (573)
Q Consensus 485 ~~lvd~~s~r--GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~--i~~~~~ 538 (573)
+.|+..+ |+ ||++-+-+|+|.+|+-.++.-=-|-+-|.-|.|++-.+ +-|+..
T Consensus 801 VmLlSLt-AGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~ 857 (901)
T KOG4439|consen 801 VMLLSLT-AGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCK 857 (901)
T ss_pred EEEEEEc-cCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEec
Confidence 3344455 46 89999999999999999999888888888898875443 334443
No 166
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.36 E-value=1.6e-05 Score=90.41 Aligned_cols=63 Identities=13% Similarity=0.040 Sum_probs=47.4
Q ss_pred CcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCC
Q 008235 307 PEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLT 369 (573)
Q Consensus 307 ~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~ 369 (573)
-.|+++||..|..-|-.+.+++..+..|||||||++.+ ...+-+++..-.+..-+.+|||...
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 46999999998766667789999999999999999987 4455555555455555666666543
No 167
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.32 E-value=3.5e-07 Score=101.86 Aligned_cols=162 Identities=16% Similarity=0.224 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHhc-CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hc
Q 008235 204 NSWGIEFWKCYSS-AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA 281 (573)
Q Consensus 204 t~iQ~~aip~il~-g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~ 281 (573)
.|+|.+.+-++.. ..++++.|||| +|||++|-+.++..+... .+.++++++|-.+|+..-.+..... ..
T Consensus 929 n~~q~~if~~~y~td~~~~~g~ptg-sgkt~~ae~a~~~~~~~~--------p~~kvvyIap~kalvker~~Dw~~r~~~ 999 (1230)
T KOG0952|consen 929 NPIQTQIFHCLYHTDLNFLLGAPTG-SGKTVVAELAIFRALSYY--------PGSKVVYIAPDKALVKERSDDWSKRDEL 999 (1230)
T ss_pred CCccceEEEEEeecchhhhhcCCcc-CcchhHHHHHHHHHhccC--------CCccEEEEcCCchhhcccccchhhhccc
Confidence 4477776665554 47888999999 999999999888766655 3678999999999987665555443 22
Q ss_pred CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHc--CCCCCCCccEEEEeCcccccC--cchHHHHHHhc--
Q 008235 282 FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL--KAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSI-- 355 (573)
Q Consensus 282 ~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~--~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l-- 355 (573)
.|++++-+.|....+ ...+. ..+|+|+||+++..+.++ ..-.+.++..+|+||.|++.+ .+-++.|....
T Consensus 1000 ~g~k~ie~tgd~~pd--~~~v~--~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~ 1075 (1230)
T KOG0952|consen 1000 PGIKVIELTGDVTPD--VKAVR--EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNY 1075 (1230)
T ss_pred CCceeEeccCccCCC--hhhee--cCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeecccc
Confidence 389999998877655 23333 489999999999887764 334578899999999998877 33333333222
Q ss_pred -----CCCCcEEEEeccCCccHHHHHHHH
Q 008235 356 -----SGKPHTVVFNDCLTYTSVPAVQNL 379 (573)
Q Consensus 356 -----~~~~q~l~~SAT~~~~~~~~~~~~ 379 (573)
++..|.+.+|.-+. ...+++.++
T Consensus 1076 ~s~~t~~~vr~~glsta~~-na~dla~wl 1103 (1230)
T KOG0952|consen 1076 ISSQTEEPVRYLGLSTALA-NANDLADWL 1103 (1230)
T ss_pred CccccCcchhhhhHhhhhh-ccHHHHHHh
Confidence 23445555543332 244555443
No 168
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.20 E-value=1e-05 Score=92.18 Aligned_cols=142 Identities=8% Similarity=0.081 Sum_probs=87.0
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh------hhc-C---CcEEE
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP------LKA-F---GIHTV 287 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~------l~~-~---~i~~~ 287 (573)
.++.+..+|| ||||.+|+-.|++..... ...+.||+||+.+.-..+...+.. |.. + .+...
T Consensus 60 ~n~~~~M~TG-tGKT~~~~~~i~~l~~~~--------~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~ 130 (986)
T PRK15483 60 ANIDIKMETG-TGKTYVYTRLMYELHQKY--------GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELY 130 (986)
T ss_pred ceEEEEeCCC-CCHHHHHHHHHHHHHHHc--------CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEE
Confidence 5889999999 999999987776654433 245799999999988777765541 111 1 24444
Q ss_pred EeCCCC-------CHHHHHHHhhcC------CCcEEEeCHHHHHHHHH-cC---------C-CC---CCC-ccEEEEeCc
Q 008235 288 SLHPGA-------AIDHQITGLRSC------EPEFLVSTPERLLKLVS-LK---------A-ID---VSG-VSLLVVDRL 339 (573)
Q Consensus 288 ~~~gg~-------~~~~~~~~l~~~------~~~IlV~TP~rL~~~l~-~~---------~-~~---l~~-l~~lViDEa 339 (573)
.+.++. +...+++..... ..+|+|.|-+.|..-.. +. . .. +.. =-.||+||.
T Consensus 131 ~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEP 210 (986)
T PRK15483 131 VINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEP 210 (986)
T ss_pred EEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECC
Confidence 444332 223333333321 47899999887743111 00 0 01 111 137999999
Q ss_pred ccccC-cchHHHHHHhcCCCCcEEEEeccCCc
Q 008235 340 DSLSK-GDTLSLIRQSISGKPHTVVFNDCLTY 370 (573)
Q Consensus 340 d~ll~-~~~l~~Il~~l~~~~q~l~~SAT~~~ 370 (573)
|++-. ......| ..+.+.. ++.||||++.
T Consensus 211 h~~~~~~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 211 HRFPRDNKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred CCCCcchHHHHHH-HhcCccc-EEEEeeecCC
Confidence 99965 3344555 4444332 5779999987
No 169
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=98.04 E-value=1.1e-05 Score=78.91 Aligned_cols=86 Identities=24% Similarity=0.316 Sum_probs=70.2
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCC-CCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccE
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPG-AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSL 333 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg-~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~ 333 (573)
..|.+|||+.+=--|..+.+.++.|..-+..++-++.- .-.++|...|.+..++|.||||+||..++..+.+.++++.+
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ 204 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKR 204 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeE
Confidence 57999999998777777777777764324455555544 36788999998778999999999999999999999999999
Q ss_pred EEEeCcc
Q 008235 334 LVVDRLD 340 (573)
Q Consensus 334 lViDEad 340 (573)
||||--|
T Consensus 205 ivlD~s~ 211 (252)
T PF14617_consen 205 IVLDWSY 211 (252)
T ss_pred EEEcCCc
Confidence 9999865
No 170
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.95 E-value=3.8e-05 Score=73.23 Aligned_cols=126 Identities=16% Similarity=0.109 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHhcCC--cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh
Q 008235 203 VNSWGIEFWKCYSSAK--DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~--dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~ 280 (573)
+++-|.+++..++... =+++.++.| ||||.+ +-.+...+.. .+..+++++||...+..+.+.+
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aG-tGKT~~-l~~~~~~~~~---------~g~~v~~~apT~~Aa~~L~~~~---- 66 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAG-TGKTTL-LKALAEALEA---------AGKRVIGLAPTNKAAKELREKT---- 66 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTT-STHHHH-HHHHHHHHHH---------TT--EEEEESSHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCC-CCHHHH-HHHHHHHHHh---------CCCeEEEECCcHHHHHHHHHhh----
Confidence 4889999999997654 356779999 999964 3334444433 3678999999998888766652
Q ss_pred cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCC-CC
Q 008235 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP 359 (573)
Q Consensus 281 ~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~-~~ 359 (573)
++.+..+.. .+.. ...--. .....+....+||||||- |++...+..++..++. +.
T Consensus 67 --~~~a~Ti~~---------~l~~-~~~~~~-----------~~~~~~~~~~vliVDEas-mv~~~~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 67 --GIEAQTIHS---------FLYR-IPNGDD-----------EGRPELPKKDVLIVDEAS-MVDSRQLARLLRLAKKSGA 122 (196)
T ss_dssp --TS-EEEHHH---------HTTE-ECCEEC-----------CSSCC-TSTSEEEESSGG-G-BHHHHHHHHHHS-T-T-
T ss_pred --CcchhhHHH---------HHhc-CCcccc-----------cccccCCcccEEEEeccc-ccCHHHHHHHHHHHHhcCC
Confidence 233222211 0100 000000 000115566799999998 4557888888888876 66
Q ss_pred cEEEEecc
Q 008235 360 HTVVFNDC 367 (573)
Q Consensus 360 q~l~~SAT 367 (573)
+++++.-+
T Consensus 123 klilvGD~ 130 (196)
T PF13604_consen 123 KLILVGDP 130 (196)
T ss_dssp EEEEEE-T
T ss_pred EEEEECCc
Confidence 77776544
No 171
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.94 E-value=0.00012 Score=71.17 Aligned_cols=73 Identities=15% Similarity=0.060 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHhcCCc-EEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 203 VNSWGIEFWKCYSSAKD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
+++-|.+|+..++...+ .++.+|.| ||||.+ +.-++..+..... ......+..+||++||..-+.++.+.+..
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPG-TGKT~~-l~~~i~~~~~~~~-~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPG-TGKTTT-LASIIAQLLQRFK-SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STT-SSHHHH-HHHHHHHH--------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCC-CChHHH-HHHHHHHhccchh-hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 47899999999999998 89999999 999944 3445555521100 00011578999999999999999988877
No 172
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.89 E-value=0.00013 Score=70.08 Aligned_cols=129 Identities=15% Similarity=0.142 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHhc---CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh-
Q 008235 203 VNSWGIEFWKCYSS---AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP- 278 (573)
Q Consensus 203 ~t~iQ~~aip~il~---g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~- 278 (573)
..|.|.+....+.+ |.+.+.+.-.| .|||-+ ++|++..++++. ...+.++|| ++|..|.+..+..
T Consensus 24 iR~~Q~~ia~~mi~~~~~~n~v~QlnMG-eGKTsV-I~Pmla~~LAdg--------~~LvrviVp-k~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 24 IRPVQVEIAREMISPPSGKNSVMQLNMG-EGKTSV-IVPMLALALADG--------SRLVRVIVP-KALLEQMRQMLRSR 92 (229)
T ss_pred eeHHHHHHHHHHhCCCCCCCeEeeeccc-CCccch-HHHHHHHHHcCC--------CcEEEEEcC-HHHHHHHHHHHHHH
Confidence 48899998888876 58999999999 999965 799999888762 346677777 5799999988876
Q ss_pred hhcC-CcEEE--EeCCCCCHHH----HH----HHhhcCCCcEEEeCHHHHHHHHHc-------CCC-----------CCC
Q 008235 279 LKAF-GIHTV--SLHPGAAIDH----QI----TGLRSCEPEFLVSTPERLLKLVSL-------KAI-----------DVS 329 (573)
Q Consensus 279 l~~~-~i~~~--~~~gg~~~~~----~~----~~l~~~~~~IlV~TP~rL~~~l~~-------~~~-----------~l~ 329 (573)
|+.. +-++. -+.-...... .+ +.... .-.|+++||+.++.+.-. +.. .+.
T Consensus 93 lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~-~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~ 171 (229)
T PF12340_consen 93 LGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMR-SGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLD 171 (229)
T ss_pred HHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHH-cCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4432 33333 3333333211 11 12222 345999999988754211 110 123
Q ss_pred CccEEEEeCccccc
Q 008235 330 GVSLLVVDRLDSLS 343 (573)
Q Consensus 330 ~l~~lViDEad~ll 343 (573)
....=|+||+|.++
T Consensus 172 ~~~rdilDEsDe~L 185 (229)
T PF12340_consen 172 EHSRDILDESDEIL 185 (229)
T ss_pred hcCCeEeECchhcc
Confidence 34456899999776
No 173
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.73 E-value=5.7e-05 Score=71.84 Aligned_cols=139 Identities=10% Similarity=0.018 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hc
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA 281 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~ 281 (573)
.|+-|..++.+++...-+++.+|.| ||||+..+..+++.+... .--+.+|+-|+.+.. +.+--| +.
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AG-TGKT~LA~a~Al~~v~~g--------~~~kiii~Rp~v~~~----~~lGflpG~ 71 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAG-TGKTFLALAAALELVKEG--------EYDKIIITRPPVEAG----EDLGFLPGD 71 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TT-SSTTHHHHHHHHHHHHTT--------S-SEEEEEE-S--TT--------SS---
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCC-CcHHHHHHHHHHHHHHhC--------CCcEEEEEecCCCCc----cccccCCCC
Confidence 5899999999999777778889999 999999888888887653 244678888876431 111111 00
Q ss_pred CCcEEE-----------EeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHH
Q 008235 282 FGIHTV-----------SLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSL 350 (573)
Q Consensus 282 ~~i~~~-----------~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~ 350 (573)
..-+.. .+.+... ...+.. .-.|-+..+..+ +- ..+++ .+||||||..+. ..++..
T Consensus 72 ~~eK~~p~~~p~~d~l~~~~~~~~----~~~~~~-~~~Ie~~~~~~i----RG--rt~~~-~~iIvDEaQN~t-~~~~k~ 138 (205)
T PF02562_consen 72 LEEKMEPYLRPIYDALEELFGKEK----LEELIQ-NGKIEIEPLAFI----RG--RTFDN-AFIIVDEAQNLT-PEELKM 138 (205)
T ss_dssp ------TTTHHHHHHHTTTS-TTC----HHHHHH-TTSEEEEEGGGG----TT----B-S-EEEEE-SGGG---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChHh----HHHHhh-cCeEEEEehhhh----cC--ccccc-eEEEEecccCCC-HHHHHH
Confidence 000000 0001111 111112 234555544322 11 22332 799999999877 889999
Q ss_pred HHHhcCCCCcEEEEecc
Q 008235 351 IRQSISGKPHTVVFNDC 367 (573)
Q Consensus 351 Il~~l~~~~q~l~~SAT 367 (573)
++.++..+..++++.-.
T Consensus 139 ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 139 ILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHTTB-TT-EEEEEE--
T ss_pred HHcccCCCcEEEEecCc
Confidence 99999988888877543
No 174
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.61 E-value=0.00056 Score=75.97 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~ 282 (573)
++||..|+-..+..+-+++..+.| ||||.+. .-++..+..... .....+++++||.--|..+.+.+... ..+
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpG-TGKTt~v-~~ll~~l~~~~~-----~~~~~i~l~APTgkAA~rL~e~~~~~~~~~ 226 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPG-TGKTTTV-AKLLAALIQLAD-----GERCRIRLAAPTGKAAARLTESLGKALRQL 226 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCC-CCHHHHH-HHHHHHHHHhcC-----CCCcEEEEECCcHHHHHHHHHHHHhhhhcc
Confidence 689999999999999999999999 9999653 233333332210 02457889999998888888766542 211
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHH------cCCCCCCCccEEEEeCcccccCcchHHHHHHhcC
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVS------LKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS 356 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~------~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~ 356 (573)
++. ..... ....-..|--||+.... ....+.-.+++||||||- |++...+..++..++
T Consensus 227 ~~~----------~~~~~-----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS-Mvd~~lm~~ll~al~ 290 (615)
T PRK10875 227 PLT----------DEQKK-----RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS-MVDLPMMARLIDALP 290 (615)
T ss_pred ccc----------hhhhh-----cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh-cccHHHHHHHHHhcc
Confidence 110 00000 00111233333322111 111223356899999997 777888889999999
Q ss_pred CCCcEEEEec
Q 008235 357 GKPHTVVFND 366 (573)
Q Consensus 357 ~~~q~l~~SA 366 (573)
+..+++++.-
T Consensus 291 ~~~rlIlvGD 300 (615)
T PRK10875 291 PHARVIFLGD 300 (615)
T ss_pred cCCEEEEecc
Confidence 9999888754
No 175
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.57 E-value=0.00031 Score=73.39 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=60.3
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH
Q 008235 220 ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI 299 (573)
Q Consensus 220 vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~ 299 (573)
++|....| ||||+.. +-++..+... ..+..++++++...|...++..+..-. ..
T Consensus 4 ~~I~G~aG-TGKTvla-~~l~~~l~~~-------~~~~~~~~l~~n~~l~~~l~~~l~~~~---------~~-------- 57 (352)
T PF09848_consen 4 ILITGGAG-TGKTVLA-LNLAKELQNS-------EEGKKVLYLCGNHPLRNKLREQLAKKY---------NP-------- 57 (352)
T ss_pred EEEEecCC-cCHHHHH-HHHHHHhhcc-------ccCCceEEEEecchHHHHHHHHHhhhc---------cc--------
Confidence 56678899 9999874 4444444111 146789999999999988887776531 00
Q ss_pred HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC
Q 008235 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (573)
Q Consensus 300 ~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~ 344 (573)
. .....+..|..+...+..........++|||||||+|.+
T Consensus 58 ----~-~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 ----K-LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ----c-hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 0 122334444444433332234567899999999999987
No 176
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.55 E-value=0.00045 Score=76.44 Aligned_cols=137 Identities=7% Similarity=0.070 Sum_probs=80.6
Q ss_pred HhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh--hcCCcEEEE---
Q 008235 214 YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL--KAFGIHTVS--- 288 (573)
Q Consensus 214 il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l--~~~~i~~~~--- 288 (573)
+....-+++...|| .|||.-|.--+|+.+...... -...+.+--|+|--+.-+.+.+-.- ...+-.++.
T Consensus 390 v~dn~v~~I~getg-cgk~tq~aq~iLe~~~~ns~g-----~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vR 463 (1282)
T KOG0921|consen 390 VAENRVVIIKGETG-CGKSTQVAQFLLESFLENSNG-----ASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVR 463 (1282)
T ss_pred HhcCceeeEeeccc-ccchhHHHHHHHHHHhhcccc-----ccccceeccccccchHHHHHHHHHhhHHhhccccccccc
Confidence 33334456668999 999999988889888776422 2345666678887777666544331 111111111
Q ss_pred eCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC--cchHHHHHHhc---CCCCcEEE
Q 008235 289 LHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSI---SGKPHTVV 363 (573)
Q Consensus 289 ~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l---~~~~q~l~ 363 (573)
.....+.. .--|+.+|-|-|+.++.++ +..+.++++||.|. .+ .+.+..++..+ .++..+++
T Consensus 464 f~Sa~prp---------yg~i~fctvgvllr~~e~g---lrg~sh~i~deihe-rdv~~dfll~~lr~m~~ty~dl~v~l 530 (1282)
T KOG0921|consen 464 FDSATPRP---------YGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHE-RDVDTDFVLIVLREMISTYRDLRVVL 530 (1282)
T ss_pred cccccccc---------ccceeeeccchhhhhhhhc---ccccccccchhhhh-hccchHHHHHHHHhhhccchhhhhhh
Confidence 11111110 1248999999999988876 56688999999994 44 44444444333 23444455
Q ss_pred EeccCC
Q 008235 364 FNDCLT 369 (573)
Q Consensus 364 ~SAT~~ 369 (573)
+|||+.
T Consensus 531 msatId 536 (1282)
T KOG0921|consen 531 MSATID 536 (1282)
T ss_pred hhcccc
Confidence 555543
No 177
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.54 E-value=0.00079 Score=76.67 Aligned_cols=129 Identities=13% Similarity=0.054 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcC
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF 282 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~ 282 (573)
+++.|.+|+..+..++-+++..+.| ||||.+. -.++..+.... ....+++++||---|..+.+..
T Consensus 324 l~~~Q~~Ai~~~~~~~~~iitGgpG-TGKTt~l-~~i~~~~~~~~-------~~~~v~l~ApTg~AA~~L~e~~------ 388 (720)
T TIGR01448 324 LSEEQKQALDTAIQHKVVILTGGPG-TGKTTIT-RAIIELAEELG-------GLLPVGLAAPTGRAAKRLGEVT------ 388 (720)
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCC-CCHHHHH-HHHHHHHHHcC-------CCceEEEEeCchHHHHHHHHhc------
Confidence 4999999999999888889999999 9999643 33333333220 1156888999987776554431
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCCCCcEE
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTV 362 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~l 362 (573)
|.....++ +.|.. .++- .... ..-.....++||||||+ |++...+..++..++...+++
T Consensus 389 g~~a~Tih---------~lL~~-~~~~-------~~~~---~~~~~~~~~llIvDEaS-Mvd~~~~~~Ll~~~~~~~rli 447 (720)
T TIGR01448 389 GLTASTIH---------RLLGY-GPDT-------FRHN---HLEDPIDCDLLIVDESS-MMDTWLALSLLAALPDHARLL 447 (720)
T ss_pred CCccccHH---------HHhhc-cCCc-------cchh---hhhccccCCEEEEeccc-cCCHHHHHHHHHhCCCCCEEE
Confidence 22111110 11111 1110 0000 00112357899999998 666777888889898888888
Q ss_pred EEecc
Q 008235 363 VFNDC 367 (573)
Q Consensus 363 ~~SAT 367 (573)
++.-+
T Consensus 448 lvGD~ 452 (720)
T TIGR01448 448 LVGDT 452 (720)
T ss_pred EECcc
Confidence 87543
No 178
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.53 E-value=0.0011 Score=73.56 Aligned_cols=141 Identities=13% Similarity=0.111 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~ 282 (573)
.++|..|+..++..+-+++..+.| ||||... ..++..+....... ..+++++.+||---|..+.+.+... ..+
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpG-TGKTt~v-~~ll~~l~~~~~~~----~~~~I~l~APTGkAA~rL~e~~~~~~~~l 220 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPG-TGKTTTV-ARLLLALVKQSPKQ----GKLRIALAAPTGKAAARLAESLRKAVKNL 220 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCC-CCHHHHH-HHHHHHHHHhcccc----CCCcEEEECCcHHHHHHHHHHHHhhhccc
Confidence 479999999999999999999999 9999753 33444343321110 1357999999988887777665442 111
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHH------cCCCCCCCccEEEEeCcccccCcchHHHHHHhcC
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVS------LKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS 356 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~------~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~ 356 (573)
+.. .. +.. ...+-..|--+|+.... ....+.-.+++||||||- |++...+..+++.++
T Consensus 221 ~~~----------~~----~~~-~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS-Mvd~~l~~~ll~al~ 284 (586)
T TIGR01447 221 AAA----------EA----LIA-ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS-MVDLPLMAKLLKALP 284 (586)
T ss_pred ccc----------hh----hhh-ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc-cCCHHHHHHHHHhcC
Confidence 110 00 000 01112333333332211 111223457899999996 777888899999999
Q ss_pred CCCcEEEEec
Q 008235 357 GKPHTVVFND 366 (573)
Q Consensus 357 ~~~q~l~~SA 366 (573)
+..++|++.-
T Consensus 285 ~~~rlIlvGD 294 (586)
T TIGR01447 285 PNTKLILLGD 294 (586)
T ss_pred CCCEEEEECC
Confidence 9999888754
No 179
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.45 E-value=0.0011 Score=75.07 Aligned_cols=115 Identities=11% Similarity=0.097 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCC-----CHHHHHHHHHhcCCCCCeEE
Q 008235 412 EKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC-----IVSHIKNSVEADGRKRPAVS 486 (573)
Q Consensus 412 ~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~-----~~~~~l~~F~~~g~~~~l~~ 486 (573)
.|++.|.-+|.++... +.++|||..-..-.+-|-.+|+.+|+..+.+ .| +|+..+++| +...++.|.
T Consensus 1260 GKLQtLAiLLqQLk~e-----ghRvLIfTQMtkmLDVLeqFLnyHgylY~RL-Dg~t~vEqRQaLmerF--NaD~RIfcf 1331 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSE-----GHRVLIFTQMTKMLDVLEQFLNYHGYLYVRL-DGNTSVEQRQALMERF--NADRRIFCF 1331 (1958)
T ss_pred chHHHHHHHHHHHHhc-----CceEEehhHHHHHHHHHHHHHhhcceEEEEe-cCCccHHHHHHHHHHh--cCCCceEEE
Confidence 4777777777776655 4599999999999999999999999988765 44 355579999 555566666
Q ss_pred EEeccccC--CCccCCCCEEEeCCCCCCH------HHHHHHHhccccCCCcceEEEEeccc
Q 008235 487 MIDKDHIS--TAELEEYEVVIVPDFIISM------KNYVEILTSMARHTVSGILHSFFTKD 539 (573)
Q Consensus 487 lvd~~s~r--GlDip~v~~VI~~d~P~s~------~~YiqR~GR~gR~g~~G~~i~~~~~~ 539 (573)
+..+-| + ||++-+.+.||.||--.++ .+..||||+| | .=..|-|++..
T Consensus 1332 ILSTrS-ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt-R---DVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1332 ILSTRS-GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT-R---DVHIYRLISER 1387 (1958)
T ss_pred EEeccC-CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc-c---ceEEEEeeccc
Confidence 433443 4 8999999999999976553 5788888886 3 23567777765
No 180
>PRK10536 hypothetical protein; Provisional
Probab=97.29 E-value=0.0028 Score=62.21 Aligned_cols=139 Identities=9% Similarity=0.051 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHH-----------HH
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA-----------AK 271 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa-----------~Q 271 (573)
.+..|...+..+.++.-+++..|+| ||||+....-+++.+... .--+++|.=|+.+.. .-
T Consensus 60 ~n~~Q~~~l~al~~~~lV~i~G~aG-TGKT~La~a~a~~~l~~~--------~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 60 RNEAQAHYLKAIESKQLIFATGEAG-CGKTWISAAKAAEALIHK--------DVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred CCHHHHHHHHHHhcCCeEEEECCCC-CCHHHHHHHHHHHHHhcC--------CeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 5889999999998888788889999 999988766666555432 123455555654321 11
Q ss_pred HHHHHhhhhcCCcEEEEeCCCCCHHHHHHHh-hcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHH
Q 008235 272 VRSVCKPLKAFGIHTVSLHPGAAIDHQITGL-RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSL 350 (573)
Q Consensus 272 i~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l-~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~ 350 (573)
+.-.+..+-. .+. .+.|. .....+ ....-.|-|... .+++... |. -.+||||||+.+- ..++..
T Consensus 131 ~~p~~~pi~D-~L~--~~~~~----~~~~~~~~~~~~~Iei~~l----~ymRGrt--l~-~~~vIvDEaqn~~-~~~~k~ 195 (262)
T PRK10536 131 FAPYFRPVYD-VLV--RRLGA----SFMQYCLRPEIGKVEIAPF----AYMRGRT--FE-NAVVILDEAQNVT-AAQMKM 195 (262)
T ss_pred HHHHHHHHHH-HHH--HHhCh----HHHHHHHHhccCcEEEecH----HHhcCCc--cc-CCEEEEechhcCC-HHHHHH
Confidence 1111111100 000 00111 111111 110123445443 2333333 32 3799999999665 789999
Q ss_pred HHHhcCCCCcEEEEe
Q 008235 351 IRQSISGKPHTVVFN 365 (573)
Q Consensus 351 Il~~l~~~~q~l~~S 365 (573)
++..++.+.++++..
T Consensus 196 ~ltR~g~~sk~v~~G 210 (262)
T PRK10536 196 FLTRLGENVTVIVNG 210 (262)
T ss_pred HHhhcCCCCEEEEeC
Confidence 999998888877754
No 181
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.28 E-value=0.0031 Score=73.46 Aligned_cols=123 Identities=12% Similarity=0.005 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHhcCCc-EEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh
Q 008235 202 FVNSWGIEFWKCYSSAKD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280 (573)
Q Consensus 202 ~~t~iQ~~aip~il~g~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~ 280 (573)
.+++-|.+|+..++.+++ +++..+.| +|||.+ +-.+.. +... .|..++.++||---|..+.+.
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AG-TGKTT~-l~~~~~-~~e~--------~G~~V~~~ApTGkAA~~L~e~----- 409 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAG-TGKSAM-LGVARE-AWEA--------AGYEVRGAALSGIAAENLEGG----- 409 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCC-CCHHHH-HHHHHH-HHHH--------cCCeEEEecCcHHHHHHHhhc-----
Confidence 359999999999999876 46668999 999975 333333 3322 377899999997655444321
Q ss_pred cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhc-CCCC
Q 008235 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI-SGKP 359 (573)
Q Consensus 281 ~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l-~~~~ 359 (573)
.|+... |-.+|+.-...+...+...++||||||- |++..++..++... ....
T Consensus 410 -tGi~a~-------------------------TI~sll~~~~~~~~~l~~~~vlIVDEAS-Mv~~~~m~~LL~~a~~~ga 462 (988)
T PRK13889 410 -SGIASR-------------------------TIASLEHGWGQGRDLLTSRDVLVIDEAG-MVGTRQLERVLSHAADAGA 462 (988)
T ss_pred -cCcchh-------------------------hHHHHHhhhcccccccccCcEEEEECcc-cCCHHHHHHHHHhhhhCCC
Confidence 133211 1112211111222346677899999998 66666777787755 5567
Q ss_pred cEEEEecc
Q 008235 360 HTVVFNDC 367 (573)
Q Consensus 360 q~l~~SAT 367 (573)
++|++.-+
T Consensus 463 rvVLVGD~ 470 (988)
T PRK13889 463 KVVLVGDP 470 (988)
T ss_pred EEEEECCH
Confidence 78877544
No 182
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.28 E-value=0.0019 Score=64.42 Aligned_cols=156 Identities=10% Similarity=-0.009 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHh-------c---CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHH
Q 008235 204 NSWGIEFWKCYS-------S---AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (573)
Q Consensus 204 t~iQ~~aip~il-------~---g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~ 273 (573)
+..|.+++-.+. - +.-.++--.|| -||--...--+++.++.. ..++|+++.+-.|-....
T Consensus 39 S~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtG-vGKGR~iAgiI~~n~l~G---------r~r~vwvS~s~dL~~Da~ 108 (303)
T PF13872_consen 39 SALQLEAVIYACQRHEQILPGGSRAGFFLGDGTG-VGKGRQIAGIILENWLRG---------RKRAVWVSVSNDLKYDAE 108 (303)
T ss_pred cHHHHHHHHHHHHHHHhhcccccCcEEEeccCCC-cCccchhHHHHHHHHHcC---------CCceEEEECChhhhhHHH
Confidence 567777664432 1 24456666899 888765444455555532 346999999999999999
Q ss_pred HHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC---CCCC---------CCccEEEEeCccc
Q 008235 274 SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK---AIDV---------SGVSLLVVDRLDS 341 (573)
Q Consensus 274 ~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~---~~~l---------~~l~~lViDEad~ 341 (573)
+.++.++...+.+..+..- ... ....+ .-.||++|-..|...-..+ ...+ .-=.+||+||||.
T Consensus 109 RDl~DIG~~~i~v~~l~~~-~~~-~~~~~---~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 109 RDLRDIGADNIPVHPLNKF-KYG-DIIRL---KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK 183 (303)
T ss_pred HHHHHhCCCcccceechhh-ccC-cCCCC---CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh
Confidence 9999886555555544321 000 00122 2358999977665443211 0111 1124899999999
Q ss_pred ccC--c---------chHHHHHHhcCCCCcEEEEeccCCccHHHH
Q 008235 342 LSK--G---------DTLSLIRQSISGKPHTVVFNDCLTYTSVPA 375 (573)
Q Consensus 342 ll~--~---------~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~ 375 (573)
+-. . ..+..+-+.+ ++.+++.+|||...+..++
T Consensus 184 akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 184 AKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEPRNM 227 (303)
T ss_pred cCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCCcee
Confidence 877 1 2334444555 4566999999987765554
No 183
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.23 E-value=0.0034 Score=70.56 Aligned_cols=65 Identities=14% Similarity=-0.028 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHhcC-CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 203 VNSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 203 ~t~iQ~~aip~il~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
+++.|..|+..++.. ..+++..|+| ||||.. +.-++..+.. .+.++|+++||..-+.++.+.+..
T Consensus 158 ln~~Q~~Av~~~l~~~~~~lI~GpPG-TGKT~t-~~~ii~~~~~---------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 158 LNESQKEAVSFALSSKDLFLIHGPPG-TGKTRT-LVELIRQLVK---------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCHHHHHHHHHHhcCCCeEEEEcCCC-CCHHHH-HHHHHHHHHH---------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 488999999999887 5677889999 999965 3444444443 266899999999988888877765
No 184
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.23 E-value=0.0014 Score=60.85 Aligned_cols=103 Identities=9% Similarity=0.063 Sum_probs=64.2
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCC----CCeeeecCCCHHHHHHHHHhcCCCCCeEEEEe--ccccCCCccCC--CCEE
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKG----YSISTGSNCIVSHIKNSVEADGRKRPAVSMID--KDHISTAELEE--YEVV 504 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~l~~F~~~g~~~~l~~lvd--~~s~rGlDip~--v~~V 504 (573)
++.+|||++|....+.+...+...+ +.+..-...+....++.| +.+...++++ +. .. ..|+|+++ ++.|
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~~-~~~~~~il~~-v~~g~~-~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQGSKSRDELLEEF-KRGEGAILLA-VAGGSF-SEGIDFPGDLLRAV 85 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEESTCCHHHHHHHHH-CCSSSEEEEE-ETTSCC-GSSS--ECESEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeecCcchHHHHHHHH-HhccCeEEEE-EecccE-EEeecCCCchhhee
Confidence 5899999999999999999887653 444432234567789999 7777777655 31 12 24999996 7789
Q ss_pred EeCCCCC----CHH-----H---------------------HHHHHhccccCCCcceEEEEecc
Q 008235 505 IVPDFII----SMK-----N---------------------YVEILTSMARHTVSGILHSFFTK 538 (573)
Q Consensus 505 I~~d~P~----s~~-----~---------------------YiqR~GR~gR~g~~G~~i~~~~~ 538 (573)
|...+|- ++. . ..|-+||+-|....=-++.++++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 9999883 211 1 13778999998765444545554
No 185
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.15 E-value=0.0053 Score=70.27 Aligned_cols=122 Identities=12% Similarity=0.063 Sum_probs=76.4
Q ss_pred CCCCHHHHHHHHHHhcC-CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 201 LFVNSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
+.+++-|..|+..++.+ +-+++..+.| +|||.. +-.+..+... .|..+++++||---|..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aG-TGKTtl--l~~i~~~~~~--------~g~~V~~~ApTg~Aa~~L~~~---- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAG-TGKSTM--LKAAREAWEA--------AGYRVIGAALSGKAAEGLQAE---- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCC-CCHHHH--HHHHHHHHHh--------CCCeEEEEeCcHHHHHHHHhc----
Confidence 34699999999999885 4567778999 999855 3333333332 367899999997666555431
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhc-CCC
Q 008235 280 KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI-SGK 358 (573)
Q Consensus 280 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l-~~~ 358 (573)
.|+....+ .+++.-+..+...+...++||||||- |++...+..++... ...
T Consensus 416 --~g~~a~Ti-------------------------~~~~~~~~~~~~~~~~~~llIvDEas-Mv~~~~~~~Ll~~~~~~~ 467 (744)
T TIGR02768 416 --SGIESRTL-------------------------ASLEYAWANGRDLLSDKDVLVIDEAG-MVGSRQMARVLKEAEEAG 467 (744)
T ss_pred --cCCceeeH-------------------------HHHHhhhccCcccCCCCcEEEEECcc-cCCHHHHHHHHHHHHhcC
Confidence 13322221 11111112222345678999999997 56666667777744 356
Q ss_pred CcEEEEe
Q 008235 359 PHTVVFN 365 (573)
Q Consensus 359 ~q~l~~S 365 (573)
.+++++.
T Consensus 468 ~kliLVG 474 (744)
T TIGR02768 468 AKVVLVG 474 (744)
T ss_pred CEEEEEC
Confidence 6777665
No 186
>PF13245 AAA_19: Part of AAA domain
Probab=97.10 E-value=0.002 Score=51.24 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=39.8
Q ss_pred HHHHHhcCCcE-EEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHH
Q 008235 210 FWKCYSSAKDI-LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (573)
Q Consensus 210 aip~il~g~dv-l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~ 276 (573)
++...+++..+ ++.+|.| ||||... +.++..+...... .+.++||++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pG-tGKT~~~-~~~i~~l~~~~~~-----~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPG-TGKTTTL-AARIAELLAARAD-----PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCC-CCHHHHH-HHHHHHHHHHhcC-----CCCeEEEECCCHHHHHHHHHHH
Confidence 34433445554 5599999 9999664 3444444422100 2568999999999999998877
No 187
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.00 E-value=0.0043 Score=69.14 Aligned_cols=82 Identities=13% Similarity=0.020 Sum_probs=52.2
Q ss_pred CCCCCCHHHHHHHHHHh----cCCcEEEEeCCCchhHHHHHHHHHHHHHHhch----------hc-------cCC-----
Q 008235 199 NPLFVNSWGIEFWKCYS----SAKDILETSGSSSTIVQIAWIVATAADSIARK----------EK-------EGF----- 252 (573)
Q Consensus 199 ~~~~~t~iQ~~aip~il----~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~----------~~-------~~~----- 252 (573)
.|+++.|.|...+..++ .+.+.++.+||| |||||+.+-..|....... .. ...
T Consensus 18 fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTG-TGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 18 FPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTG-TGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred ccCCcchHHHHHHHHHHHHHHHhhhhhccCCCC-CCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 35666888888665554 457889999999 9999998766665543222 00 000
Q ss_pred -----C-----CCCcEEEEEcccHHHHHHHHHHHhhhhc
Q 008235 253 -----S-----FTGPFLLFLVSSQEKAAKVRSVCKPLKA 281 (573)
Q Consensus 253 -----~-----~~~~~~Lil~PtreLa~Qi~~~~~~l~~ 281 (573)
. -.-|.++|-+-|..-..|+.+++++..+
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y 135 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGY 135 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCC
Confidence 0 0135677777777666777777766533
No 188
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.93 E-value=0.0062 Score=65.78 Aligned_cols=76 Identities=12% Similarity=-0.031 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc
Q 008235 202 FVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA 281 (573)
Q Consensus 202 ~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~ 281 (573)
.+..-|..|+.++++..=.|++.|.| +|||.+-. .++.++... ....+||.+|+.--+.|+.+.+.+.
T Consensus 410 kLN~SQ~~AV~~VL~rplsLIQGPPG-TGKTvtsa-~IVyhl~~~--------~~~~VLvcApSNiAVDqLaeKIh~t-- 477 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRPLSLIQGPPG-TGKTVTSA-TIVYHLARQ--------HAGPVLVCAPSNIAVDQLAEKIHKT-- 477 (935)
T ss_pred hhchHHHHHHHHHHcCCceeeecCCC-CCceehhH-HHHHHHHHh--------cCCceEEEcccchhHHHHHHHHHhc--
Confidence 44778999999999998899999999 99998754 455555544 2557999999998888888877665
Q ss_pred CCcEEEEeC
Q 008235 282 FGIHTVSLH 290 (573)
Q Consensus 282 ~~i~~~~~~ 290 (573)
|++++-+.
T Consensus 478 -gLKVvRl~ 485 (935)
T KOG1802|consen 478 -GLKVVRLC 485 (935)
T ss_pred -CceEeeee
Confidence 56665443
No 189
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.81 E-value=0.0039 Score=69.24 Aligned_cols=61 Identities=5% Similarity=-0.069 Sum_probs=48.0
Q ss_pred cC-CCccCCCCEEEeCCCCCCHHHHHHHHhccccCC--CcceE-----------EEEeccccHHHHHHHHHHHHH
Q 008235 493 IS-TAELEEYEVVIVPDFIISMKNYVEILTSMARHT--VSGIL-----------HSFFTKDDAAHAGQMIEILEQ 553 (573)
Q Consensus 493 ~r-GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g--~~G~~-----------i~~~~~~d~~~~~~l~~~l~~ 553 (573)
+| |.|=|+|=.++-+....|..+=.|.+||+-|-- ..|.= .+|+...+..++..|.+-++.
T Consensus 493 LrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~LqkEI~~ 567 (985)
T COG3587 493 LREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQKEIND 567 (985)
T ss_pred HhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHHHHHHH
Confidence 67 999999999999999999999999999998853 23322 235566788888888776554
No 190
>PRK14974 cell division protein FtsY; Provisional
Probab=96.74 E-value=0.022 Score=58.76 Aligned_cols=130 Identities=12% Similarity=0.061 Sum_probs=75.6
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc-c--HHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS-S--QEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P-t--reLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
.=++++.++| +|||.+..- +...+.. .+.+++++.. | ..-..|+......+ |+.+.....|.+
T Consensus 141 ~vi~~~G~~G-vGKTTtiak-LA~~l~~---------~g~~V~li~~Dt~R~~a~eqL~~~a~~l---gv~v~~~~~g~d 206 (336)
T PRK14974 141 VVIVFVGVNG-TGKTTTIAK-LAYYLKK---------NGFSVVIAAGDTFRAGAIEQLEEHAERL---GVKVIKHKYGAD 206 (336)
T ss_pred eEEEEEcCCC-CCHHHHHHH-HHHHHHH---------cCCeEEEecCCcCcHHHHHHHHHHHHHc---CCceecccCCCC
Confidence 3466778999 999975332 2222322 2445555543 2 33445666555554 555443222222
Q ss_pred HHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCc
Q 008235 295 IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTY 370 (573)
Q Consensus 295 ~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~ 370 (573)
.... +.+.+... ...+.++|+||.|.++.. ..++..+...+.++.-+++++||..+
T Consensus 207 p~~v------------------~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 207 PAAV------------------AYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred HHHH------------------HHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch
Confidence 1110 11212110 123467999999998864 66777777777788888899999887
Q ss_pred cHHHHHHHHhc
Q 008235 371 TSVPAVQNLLL 381 (573)
Q Consensus 371 ~~~~~~~~~l~ 381 (573)
+....++.|..
T Consensus 267 d~~~~a~~f~~ 277 (336)
T PRK14974 267 DAVEQAREFNE 277 (336)
T ss_pred hHHHHHHHHHh
Confidence 76666766653
No 191
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.73 E-value=0.0041 Score=66.79 Aligned_cols=63 Identities=11% Similarity=-0.002 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHhcCCcE-EEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHH
Q 008235 203 VNSWGIEFWKCYSSAKDI-LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dv-l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~ 276 (573)
+.+-|.+|+....+.+++ ++..|.| ||||..... ++..+... +.++||..||.+-+.-|.+.+
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPG-TGKT~TlvE-iI~qlvk~---------~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPG-TGKTRTLVE-IISQLVKQ---------KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCC-CCceeeHHH-HHHHHHHc---------CCeEEEEcCchHHHHHHHHHh
Confidence 467899999999998775 5669999 999988544 45555543 568999999999888777743
No 192
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.68 E-value=0.017 Score=66.03 Aligned_cols=151 Identities=8% Similarity=0.021 Sum_probs=91.7
Q ss_pred CHHHHHHHHHH--hcC--CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 204 NSWGIEFWKCY--SSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 204 t~iQ~~aip~i--l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
..+|...+.-+ +-. -|-|+.-.-| -|||+- .|.+|.|+......- || -||||||--+. -+.-.++++
T Consensus 617 ReYQkiGLdWLatLYeknlNGILADEmG-LGKTIQ-tISllAhLACeegnW-----GP-HLIVVpTsviL-nWEMElKRw 687 (1958)
T KOG0391|consen 617 REYQKIGLDWLATLYEKNLNGILADEMG-LGKTIQ-TISLLAHLACEEGNW-----GP-HLIVVPTSVIL-NWEMELKRW 687 (1958)
T ss_pred HHHHHhhHHHHHHHHHhcccceehhhhc-ccchhH-HHHHHHHHHhcccCC-----CC-ceEEeechhhh-hhhHHHhhh
Confidence 45676654333 223 3456667899 999975 577788887654221 23 48888986543 355666666
Q ss_pred hcCCcEEEEeCCCCCHHHHHH--HhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC--cchHHHHHHhc
Q 008235 280 KAFGIHTVSLHPGAAIDHQIT--GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSI 355 (573)
Q Consensus 280 ~~~~i~~~~~~gg~~~~~~~~--~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l 355 (573)
.. |+++..+||........+ +.+-.-++|.|++--.+.+-+ ..+.-.+-+||||||||.+-. ......+++.-
T Consensus 688 cP-glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~--~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfn 764 (1958)
T KOG0391|consen 688 CP-GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDL--TAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFN 764 (1958)
T ss_pred CC-cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHH--HHHHhhccceeehhhhhhhcchhHHHHHHHhccc
Confidence 44 899999998643222211 111113678888765443322 234446678999999999988 44555555542
Q ss_pred CCCCcEEEEeccC
Q 008235 356 SGKPHTVVFNDCL 368 (573)
Q Consensus 356 ~~~~q~l~~SAT~ 368 (573)
..+.++++.|.
T Consensus 765 --sqrRLLLtgTP 775 (1958)
T KOG0391|consen 765 --SQRRLLLTGTP 775 (1958)
T ss_pred --hhheeeecCCc
Confidence 24456677774
No 193
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.11 Score=54.62 Aligned_cols=52 Identities=8% Similarity=0.109 Sum_probs=33.8
Q ss_pred CCCccEEEEeCcccccC----cchHHHHHHhcCCC-CcEEEEeccCCcc-HHHHHHHH
Q 008235 328 VSGVSLLVVDRLDSLSK----GDTLSLIRQSISGK-PHTVVFNDCLTYT-SVPAVQNL 379 (573)
Q Consensus 328 l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~-~q~l~~SAT~~~~-~~~~~~~~ 379 (573)
+.+.++|+||++.++.. ...+..++..+.+. --++++|||.... +.+.+..|
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 45689999999998875 24555555555433 3567899998743 44444444
No 194
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.61 E-value=0.024 Score=66.67 Aligned_cols=124 Identities=9% Similarity=0.013 Sum_probs=79.2
Q ss_pred CCCCHHHHHHHHHHhcC-CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 201 LFVNSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
+.+++-|.+|+..+..+ +=++++.+-| +|||.+. -++...+ .. .|..++.++||---|..+.+.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AG-TGKTt~l-~~~~~~~-e~--------~G~~V~g~ApTgkAA~~L~e~---- 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAG-AGKTTMM-KAAREAW-EA--------AGYRVVGGALAGKAAEGLEKE---- 444 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCC-CCHHHHH-HHHHHHH-HH--------cCCeEEEEcCcHHHHHHHHHh----
Confidence 44699999999988654 5567778999 9999653 3333333 22 377899999996655444321
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcC-CC
Q 008235 280 KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS-GK 358 (573)
Q Consensus 280 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~-~~ 358 (573)
.|+....+. +++--...+...+..-.+||||||- |++..++..++..++ ..
T Consensus 445 --~Gi~a~TIa-------------------------s~ll~~~~~~~~l~~~~vlVIDEAs-Mv~~~~m~~Ll~~~~~~g 496 (1102)
T PRK13826 445 --AGIQSRTLS-------------------------SWELRWNQGRDQLDNKTVFVLDEAG-MVASRQMALFVEAVTRAG 496 (1102)
T ss_pred --hCCCeeeHH-------------------------HHHhhhccCccCCCCCcEEEEECcc-cCCHHHHHHHHHHHHhcC
Confidence 244333221 1100001122345667899999998 667778888888775 57
Q ss_pred CcEEEEecc
Q 008235 359 PHTVVFNDC 367 (573)
Q Consensus 359 ~q~l~~SAT 367 (573)
.+++++.-+
T Consensus 497 arvVLVGD~ 505 (1102)
T PRK13826 497 AKLVLVGDP 505 (1102)
T ss_pred CEEEEECCH
Confidence 788887654
No 195
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.61 E-value=0.0049 Score=62.85 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
+|+-|.+++.. ...+++|.|+.| ||||.+.+--++..+.... ....++|+|++|+..|..+...+...
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AG-SGKT~~l~~ri~~ll~~~~------~~~~~Il~lTft~~aa~e~~~ri~~~ 68 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAG-SGKTTTLLERIAYLLYEGG------VPPERILVLTFTNAAAQEMRERIREL 68 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TT-SSHHHHHHHHHHHHHHTSS------STGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCC-CCchHHHHHHHHHhhcccc------CChHHheecccCHHHHHHHHHHHHHh
Confidence 37889999988 678999999999 9999886554444443331 13557999999999999999888774
No 196
>PHA02533 17 large terminase protein; Provisional
Probab=96.51 E-value=0.016 Score=63.62 Aligned_cols=148 Identities=9% Similarity=-0.004 Sum_probs=87.2
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 200 PLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 200 ~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
|+.+.|+|...+..+..++-.++..+=. .|||.+...-++...... .+..+++++|+++-|..+.+.++.+
T Consensus 57 Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq-~GKStl~a~~al~~a~~~--------~~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHKNRFNACNLSRQ-LGKTTVVAIFLLHYVCFN--------KDKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred ecCCcHHHHHHHHHHhcCeEEEEEEcCc-CChHHHHHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 4778999999998876666666777777 899988765555444432 3568999999999999888877764
Q ss_pred -hcC-C-cEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-cchHHHHHHhc
Q 008235 280 -KAF-G-IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSI 355 (573)
Q Consensus 280 -~~~-~-i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l 355 (573)
... . +....... ....-.+.+ |..|.+.|-+ .+...=.+..++|+||+|.+-+ .+.+..+...+
T Consensus 128 ie~~P~l~~~~i~~~----~~~~I~l~N-GS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~~~e~~~ai~p~l 195 (534)
T PHA02533 128 IELLPDFLQPGIVEW----NKGSIELEN-GSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPNFIDFWLAIQPVI 195 (534)
T ss_pred HHhCHHHhhcceeec----CccEEEeCC-CCEEEEEeCC-------CCccCCCCCceEEEeccccCCCHHHHHHHHHHHH
Confidence 111 1 11000000 001111233 4555444421 1112233567899999997765 33333444444
Q ss_pred C--CCCcEEEEeccC
Q 008235 356 S--GKPHTVVFNDCL 368 (573)
Q Consensus 356 ~--~~~q~l~~SAT~ 368 (573)
. ...+++++|+..
T Consensus 196 asg~~~r~iiiSTp~ 210 (534)
T PHA02533 196 SSGRSSKIIITSTPN 210 (534)
T ss_pred HcCCCceEEEEECCC
Confidence 3 234566666664
No 197
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.49 E-value=0.28 Score=62.04 Aligned_cols=212 Identities=11% Similarity=0.057 Sum_probs=116.6
Q ss_pred CCCCHHHHHHHHHHhcC--CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 201 LFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
+.+++-|.+|+..++.. +=.++..+.| +|||.+ +-.+..+... .|..+++++||---|.++.+...
T Consensus 428 ~~Ls~~Q~~Av~~il~s~~~v~ii~G~aG-TGKTt~--l~~l~~~~~~--------~G~~V~~lAPTgrAA~~L~e~~g- 495 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTSTKRFIIINGFGG-TGSTEI--AQLLLHLASE--------QGYEIQIITAGSLSAQELRQKIP- 495 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEECCC-CCHHHH--HHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHhc-
Confidence 45689999999999886 4466778999 999965 3333333332 37789999999876665554322
Q ss_pred hhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhc-CC
Q 008235 279 LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI-SG 357 (573)
Q Consensus 279 l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l-~~ 357 (573)
+.... .......+.. . .-..|...++ .....+..-++||||||- |++..++..++... +.
T Consensus 496 -----~~A~T------i~~~l~~l~~--~-~~~~tv~~fl----~~~~~l~~~~vlIVDEAs-Ml~~~~~~~Ll~~a~~~ 556 (1960)
T TIGR02760 496 -----RLAST------FITWVKNLFN--D-DQDHTVQGLL----DKSSPFSNKDIFVVDEAN-KLSNNELLKLIDKAEQH 556 (1960)
T ss_pred -----chhhh------HHHHHHhhcc--c-ccchhHHHhh----cccCCCCCCCEEEEECCC-CCCHHHHHHHHHHHhhc
Confidence 21111 1111122211 1 1122322332 233345677899999998 66688888888866 57
Q ss_pred CCcEEEEeccC--Cc----cHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCC
Q 008235 358 KPHTVVFNDCL--TY----TSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHS 431 (573)
Q Consensus 358 ~~q~l~~SAT~--~~----~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~ 431 (573)
+.+++++.-+- +. .+..++.. ..+..+.+... ......+ .+... ....+...+.+....+.. .
T Consensus 557 garvVlvGD~~QL~sV~aG~~f~~L~~---~gv~t~~l~~i-~rq~~~v--~i~~~-~~~~r~~~ia~~y~~L~~--~-- 625 (1960)
T TIGR02760 557 NSKLILLNDSAQRQGMSAGSAIDLLKE---GGVTTYAWVDT-KQQKASV--EISEA-VDKLRVDYIASAWLDLTP--D-- 625 (1960)
T ss_pred CCEEEEEcChhhcCccccchHHHHHHH---CCCcEEEeecc-cccCcce--eeecc-CchHHHHHHHHHHHhccc--c--
Confidence 88999886542 22 12222222 21222333221 1111122 12222 233444444443333322 1
Q ss_pred CCCcEEEEecChhhHHHHHHHHHH
Q 008235 432 EPLKVLYIVGKDSKFQNLVSTLKC 455 (573)
Q Consensus 432 ~~~k~lIF~~s~~~~~~l~~~L~~ 455 (573)
...++||..+..+.+.|....+.
T Consensus 626 -r~~tliv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 626 -RQNSQVLATTHREQQDLTQIIRN 648 (1960)
T ss_pred -cCceEEEcCCcHHHHHHHHHHHH
Confidence 34699999998888888776543
No 198
>PRK04296 thymidine kinase; Provisional
Probab=96.47 E-value=0.0084 Score=56.79 Aligned_cols=109 Identities=11% Similarity=0.118 Sum_probs=60.0
Q ss_pred cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEccc---HHHHHHHHHHHhhhhcCCcEEEEeCCCCCH
Q 008235 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS---QEKAAKVRSVCKPLKAFGIHTVSLHPGAAI 295 (573)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Pt---reLa~Qi~~~~~~l~~~~i~~~~~~gg~~~ 295 (573)
=+++..|.| +|||.+ ++-++.++.. .+.+++|+-|. |+...++ + ..+|+...
T Consensus 4 i~litG~~G-sGKTT~-~l~~~~~~~~---------~g~~v~i~k~~~d~~~~~~~i---~---~~lg~~~~-------- 58 (190)
T PRK04296 4 LEFIYGAMN-SGKSTE-LLQRAYNYEE---------RGMKVLVFKPAIDDRYGEGKV---V---SRIGLSRE-------- 58 (190)
T ss_pred EEEEECCCC-CHHHHH-HHHHHHHHHH---------cCCeEEEEeccccccccCCcE---e---cCCCCccc--------
Confidence 356778999 999965 3444444432 25678888663 3221111 1 11122110
Q ss_pred HHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCCCCcEEEEeccC
Q 008235 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCL 368 (573)
Q Consensus 296 ~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~l~~SAT~ 368 (573)
.+.+..+..+++.+.. .-.+.++||||||+.+ +.+++..++..+.+....+++++-.
T Consensus 59 ------------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l-~~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 59 ------------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFL-DKEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred ------------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccC-CHHHHHHHHHHHHHcCCeEEEEecC
Confidence 1223455556665544 3356789999999754 4455666777754444555555543
No 199
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.29 Score=51.22 Aligned_cols=70 Identities=6% Similarity=0.088 Sum_probs=41.1
Q ss_pred EeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCc-cHHHHHHHHhc
Q 008235 311 VSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTY-TSVPAVQNLLL 381 (573)
Q Consensus 311 V~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~-~~~~~~~~~l~ 381 (573)
+.+|..|.+.+..-. ...+.++|+||-+=+... ..++..++....+..-++.+|||... ++.+.+..|-.
T Consensus 302 ~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~ 376 (436)
T PRK11889 302 VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD 376 (436)
T ss_pred cCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC
Confidence 346777766554311 012478999999887665 33344444444444446678987654 45666666644
No 200
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.20 E-value=0.018 Score=62.77 Aligned_cols=146 Identities=10% Similarity=0.111 Sum_probs=83.7
Q ss_pred HHHHHHHHHHh-----cC----CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHH
Q 008235 205 SWGIEFWKCYS-----SA----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (573)
Q Consensus 205 ~iQ~~aip~il-----~g----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~ 275 (573)
|||...+-.++ .| +.+++.-|=| .|||.....-++..+.... ..++.+++.+++++-|..+++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~Rk-NGKS~l~a~i~ly~l~~~g------~~~~~i~~~A~~~~QA~~~f~~ 73 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRK-NGKSTLAAAIALYMLFLDG------EPGAEIYCAANTRDQAKIVFDE 73 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCc-cCccHHHHHHHHHHHhcCC------ccCceEEEEeCCHHHHHHHHHH
Confidence 68887777766 23 5678888999 9999766555555554331 1478899999999999999999
Q ss_pred HhhhhcC--CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHc--CCCCCCCccEEEEeCcccccCcchHHHH
Q 008235 276 CKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL--KAIDVSGVSLLVVDRLDSLSKGDTLSLI 351 (573)
Q Consensus 276 ~~~l~~~--~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~--~~~~l~~l~~lViDEad~ll~~~~l~~I 351 (573)
+..+-.. .+.... + ....... .-.|.....+.++..+.. +..+=.+..++|+||+|.+-+.+.+..|
T Consensus 74 ~~~~i~~~~~l~~~~--~-----~~~~~~~--~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l 144 (477)
T PF03354_consen 74 AKKMIEASPELRKRK--K-----PKIIKSN--KKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDAL 144 (477)
T ss_pred HHHHHHhChhhccch--h-----hhhhhhh--ceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHH
Confidence 8886221 111000 0 0000000 112222221222222222 2233346789999999988764445555
Q ss_pred HHhc--CCCCcEEEEec
Q 008235 352 RQSI--SGKPHTVVFND 366 (573)
Q Consensus 352 l~~l--~~~~q~l~~SA 366 (573)
.... .++++++.+|.
T Consensus 145 ~~g~~~r~~pl~~~IST 161 (477)
T PF03354_consen 145 ESGMGARPNPLIIIIST 161 (477)
T ss_pred HhhhccCCCceEEEEeC
Confidence 4444 35666666643
No 201
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.20 E-value=0.45 Score=54.85 Aligned_cols=68 Identities=18% Similarity=0.104 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
++|-|.+|+.. ....++|.|+.| ||||.+..-=+ .++..... ...-++|+|+-|+.-|..+.+.+..+
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaG-SGKT~~l~~ri-a~Li~~~~-----i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 5 LNPEQREAVKT--TEGPLLIMAGAG-SGKTRVLTHRI-AHLIAEKN-----VAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cCHHHHHHHhC--CCCCEEEEeCCC-CCHHHHHHHHH-HHHHHcCC-----CCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 48999999864 347899999999 99998754433 33433210 02347999999999999998888765
No 202
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.16 E-value=0.017 Score=50.58 Aligned_cols=18 Identities=0% Similarity=-0.119 Sum_probs=12.1
Q ss_pred CCcEEEEeCCCchhHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (573)
++-+++.+|+| +|||...
T Consensus 4 ~~~~~i~G~~G-~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPG-SGKTTLI 21 (131)
T ss_dssp ---EEEEE-TT-SSHHHHH
T ss_pred CcccEEEcCCC-CCHHHHH
Confidence 46788999999 9999753
No 203
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.14 E-value=0.022 Score=57.98 Aligned_cols=137 Identities=14% Similarity=0.089 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHhcC-Cc-EEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc
Q 008235 204 NSWGIEFWKCYSSA-KD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA 281 (573)
Q Consensus 204 t~iQ~~aip~il~g-~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~ 281 (573)
...|.-|+..++.. -+ |....+-| ||||+-.+...++.....+ ...++||-=|+..+..
T Consensus 230 n~eQ~~ALdlLld~dI~lV~L~G~AG-tGKTlLALaAgleqv~e~~-------~y~KiiVtRp~vpvG~----------- 290 (436)
T COG1875 230 NAEQRVALDLLLDDDIDLVSLGGKAG-TGKTLLALAAGLEQVLERK-------RYRKIIVTRPTVPVGE----------- 290 (436)
T ss_pred cHHHHHHHHHhcCCCCCeEEeeccCC-ccHhHHHHHHHHHHHHHHh-------hhceEEEecCCcCccc-----------
Confidence 66788899888876 33 34446778 8999998888888887664 2345666667654432
Q ss_pred CCcEEEEeCCCCCHHHH---HHHhhcCCCcEEE----eCHHHHHHHHHcCCCCCCC----------ccEEEEeCcccccC
Q 008235 282 FGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLV----STPERLLKLVSLKAIDVSG----------VSLLVVDRLDSLSK 344 (573)
Q Consensus 282 ~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV----~TP~rL~~~l~~~~~~l~~----------l~~lViDEad~ll~ 344 (573)
.++.+-| ...++. ...+.. +-+++. ++-+.|-..+..+.+.+.. =.|+|||||..+-
T Consensus 291 ---dIGfLPG-~eEeKm~PWmq~i~D-nLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT- 364 (436)
T COG1875 291 ---DIGFLPG-TEEEKMGPWMQAIFD-NLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT- 364 (436)
T ss_pred ---ccCcCCC-chhhhccchHHHHHh-HHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC-
Confidence 2222222 211111 111100 011111 1233444454444433221 2589999999877
Q ss_pred cchHHHHHHhcCCCCcEEEEe
Q 008235 345 GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 345 ~~~l~~Il~~l~~~~q~l~~S 365 (573)
..++.-|+.++.++..++++.
T Consensus 365 pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred HHHHHHHHHhccCCCEEEEcC
Confidence 899999999999888888764
No 204
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.08 E-value=0.018 Score=64.92 Aligned_cols=122 Identities=14% Similarity=0.065 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHhcCCc-EEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcC
Q 008235 204 NSWGIEFWKCYSSAKD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~ 282 (573)
+.-|++|+-.++..+| .++..-.| ||||... ..++..|.. .|.++|..+-|..-+. +.+.+|...
T Consensus 671 N~dQr~A~~k~L~aedy~LI~GMPG-TGKTTtI-~~LIkiL~~---------~gkkVLLtsyThsAVD---NILiKL~~~ 736 (1100)
T KOG1805|consen 671 NNDQRQALLKALAAEDYALILGMPG-TGKTTTI-SLLIKILVA---------LGKKVLLTSYTHSAVD---NILIKLKGF 736 (1100)
T ss_pred CHHHHHHHHHHHhccchheeecCCC-CCchhhH-HHHHHHHHH---------cCCeEEEEehhhHHHH---HHHHHHhcc
Confidence 6779999999999877 46667889 9999763 223333333 3778888888875544 444455444
Q ss_pred CcEEEEeCCCCCHHHH-----------------HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC
Q 008235 283 GIHTVSLHPGAAIDHQ-----------------ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~-----------------~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~ 344 (573)
++.+.-+-.+.....+ ....-. .+.||.+|-=-+.+ ..+..+++++.|||||-.++.
T Consensus 737 ~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~-~~~IVa~TClgi~~----plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 737 GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLD-QTSIVACTCLGINH----PLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhC-CCcEEEEEccCCCc----hhhhccccCEEEEcccccccc
Confidence 5544332222211111 112222 57888888432222 224567799999999998875
No 205
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.95 E-value=0.026 Score=59.27 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHH------hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHH
Q 008235 203 VNSWGIEFWKCY------SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (573)
Q Consensus 203 ~t~iQ~~aip~i------l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi 272 (573)
+++-|+.++..+ ..+..+++..+-| +|||.. +-.+...... .+..+++++||--=|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~G-tGKs~l--~~~i~~~~~~--------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAG-TGKSFL--IKAIIDYLRS--------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCC-CChhHH--HHHHHHHhcc--------ccceEEEecchHHHHHhc
Confidence 477888888877 6778999999999 999854 4444444332 366899999996655544
No 206
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.85 E-value=0.1 Score=45.85 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=19.0
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhc
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSI 355 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l 355 (573)
.....+||+||+|.+.. ...+..++...
T Consensus 82 ~~~~~~lilDe~~~~~~~~~~~~~~~i~~~ 111 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRGAQNALLRVLETL 111 (151)
T ss_pred cCCCeEEEEeChhhhhHHHHHHHHHHHHhc
Confidence 34567999999998843 44555555554
No 207
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.09 Score=54.91 Aligned_cols=53 Identities=9% Similarity=0.167 Sum_probs=30.1
Q ss_pred CCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCcc-HHHHHHHHh
Q 008235 328 VSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYT-SVPAVQNLL 380 (573)
Q Consensus 328 l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~-~~~~~~~~l 380 (573)
+.+.++|+||.+-+... .+++..+.....+...++++|||.... +.+.+..|.
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~ 270 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYR 270 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHH
Confidence 44568888999875543 223333322222334477889998654 344556554
No 208
>PRK06526 transposase; Provisional
Probab=95.69 E-value=0.03 Score=55.54 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=26.4
Q ss_pred CCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCc
Q 008235 328 VSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTY 370 (573)
Q Consensus 328 l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~ 370 (573)
+.+.++|||||+|.+.. ...+..++........+++.|...+.
T Consensus 157 l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~ 203 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFG 203 (254)
T ss_pred hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHH
Confidence 34578999999997653 33455555543334456666665443
No 209
>PRK08181 transposase; Validated
Probab=95.65 E-value=0.15 Score=50.95 Aligned_cols=101 Identities=14% Similarity=0.113 Sum_probs=55.5
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
-.+.+++++.|+| +|||.... .+...+.. .|..++++ +..+|..++......
T Consensus 104 ~~~~nlll~Gp~G-tGKTHLa~-Aia~~a~~---------~g~~v~f~-~~~~L~~~l~~a~~~---------------- 155 (269)
T PRK08181 104 AKGANLLLFGPPG-GGKSHLAA-AIGLALIE---------NGWRVLFT-RTTDLVQKLQVARRE---------------- 155 (269)
T ss_pred hcCceEEEEecCC-CcHHHHHH-HHHHHHHH---------cCCceeee-eHHHHHHHHHHHHhC----------------
Confidence 3578999999999 99995422 22222322 24445444 456676665432100
Q ss_pred HHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEecc
Q 008235 295 IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDC 367 (573)
Q Consensus 295 ~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT 367 (573)
.+...++.. +.++++|||||.+.+.. ...+..|++.......+++.|-.
T Consensus 156 -----------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 156 -----------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred -----------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 011112111 34578999999997654 33456666654444455554444
No 210
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=95.56 E-value=0.029 Score=61.20 Aligned_cols=152 Identities=5% Similarity=0.066 Sum_probs=91.8
Q ss_pred CHHHHHHHHHH----hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 204 NSWGIEFWKCY----SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 204 t~iQ~~aip~i----l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
..+|...+.-+ -+|-+-|+.-.-| -|||.- .+.++.+|.....- -|| -|||+|.-.|- -+...+.+|
T Consensus 569 KEYQlkGLnWLvnlYdqGiNGILADeMG-LGKTVQ-sisvlAhLaE~~nI-----wGP-FLVVtpaStL~-NWaqEisrF 639 (1185)
T KOG0388|consen 569 KEYQLKGLNWLVNLYDQGINGILADEMG-LGKTVQ-SISVLAHLAETHNI-----WGP-FLVVTPASTLH-NWAQEISRF 639 (1185)
T ss_pred HHHhhccHHHHHHHHHccccceehhhhc-cchhHH-HHHHHHHHHHhccC-----CCc-eEEeehHHHHh-HHHHHHHHh
Confidence 44676655443 3477888888999 999976 56778888766433 244 47788866552 233333333
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHh--------hcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC--cchHH
Q 008235 280 KAFGIHTVSLHPGAAIDHQITGL--------RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLS 349 (573)
Q Consensus 280 ~~~~i~~~~~~gg~~~~~~~~~l--------~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~--~~~l~ 349 (573)
-. .++++-..|+.......+.. +..+++|+|+|-..+.. ..+.+.--.-.|+|+|||..+-. .....
T Consensus 640 lP-~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVt--Deky~qkvKWQYMILDEAQAIKSSsS~RWK 716 (1185)
T KOG0388|consen 640 LP-SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVT--DEKYLQKVKWQYMILDEAQAIKSSSSSRWK 716 (1185)
T ss_pred Cc-cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeec--hHHHHHhhhhhheehhHHHHhhhhhhhHHH
Confidence 21 78888888887766555442 12378999998554321 00111111246899999998765 44444
Q ss_pred HHHHhcCCCCcEEEEeccCC
Q 008235 350 LIRQSISGKPHTVVFNDCLT 369 (573)
Q Consensus 350 ~Il~~l~~~~q~l~~SAT~~ 369 (573)
.++..-. +-.++++.|.-
T Consensus 717 tLLsF~c--RNRLLLTGTPI 734 (1185)
T KOG0388|consen 717 TLLSFKC--RNRLLLTGTPI 734 (1185)
T ss_pred HHhhhhc--cceeeecCCcc
Confidence 4544422 34577788753
No 211
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.26 E-value=0.5 Score=47.28 Aligned_cols=128 Identities=5% Similarity=0.047 Sum_probs=70.7
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEE-EEEcccH--HHHHHHHHHHhhhhcCCcEEEEeCCC
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFL-LFLVSSQ--EKAAKVRSVCKPLKAFGIHTVSLHPG 292 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~-Lil~Ptr--eLa~Qi~~~~~~l~~~~i~~~~~~gg 292 (573)
.+..++++.++| +|||..+.+-+. .+.. .+..+ +|-+.+. ..+.|+...+..+ +
T Consensus 74 ~~~~i~~~G~~g-~GKTtl~~~l~~-~l~~---------~~~~v~~i~~D~~ri~~~~ql~~~~~~~---~--------- 130 (270)
T PRK06731 74 EVQTIALIGPTG-VGKTTTLAKMAW-QFHG---------KKKTVGFITTDHSRIGTVQQLQDYVKTI---G--------- 130 (270)
T ss_pred CCCEEEEECCCC-CcHHHHHHHHHH-HHHH---------cCCeEEEEecCCCCHHHHHHHHHHhhhc---C---------
Confidence 446778889999 999986654332 2221 13334 3433232 3444544433322 2
Q ss_pred CCHHHHHHHhhcCCCcEEE-eCHHHHHHHHHcCCCCCCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEecc
Q 008235 293 AAIDHQITGLRSCEPEFLV-STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDC 367 (573)
Q Consensus 293 ~~~~~~~~~l~~~~~~IlV-~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT 367 (573)
+.+.. .+|..|.+.+..- -...+.++++||-+=+... ..++..++....+..-++++|||
T Consensus 131 --------------~~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~ 195 (270)
T PRK06731 131 --------------FEVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS 195 (270)
T ss_pred --------------ceEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCc
Confidence 23332 3555555544321 1124578999999988764 34444555544555446679998
Q ss_pred CC-ccHHHHHHHHhc
Q 008235 368 LT-YTSVPAVQNLLL 381 (573)
Q Consensus 368 ~~-~~~~~~~~~~l~ 381 (573)
.. .+..+.++.|-.
T Consensus 196 ~~~~d~~~~~~~f~~ 210 (270)
T PRK06731 196 MKSKDMIEIITNFKD 210 (270)
T ss_pred cCHHHHHHHHHHhCC
Confidence 65 467777777643
No 212
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.83 Score=47.72 Aligned_cols=19 Identities=5% Similarity=-0.101 Sum_probs=15.2
Q ss_pred CCcEEEEeCCCchhHHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAWI 236 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~ 236 (573)
++-++++.||| +|||....
T Consensus 206 ~~ii~lvGptG-vGKTTt~a 224 (407)
T PRK12726 206 HRIISLIGQTG-VGKTTTLV 224 (407)
T ss_pred CeEEEEECCCC-CCHHHHHH
Confidence 56778889999 99997643
No 213
>PRK05642 DNA replication initiation factor; Validated
Probab=95.07 E-value=0.067 Score=52.43 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=28.1
Q ss_pred CCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCc
Q 008235 329 SGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTY 370 (573)
Q Consensus 329 ~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~ 370 (573)
.++++||||++|.+.. ...+..+++.+......++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 3567899999997754 44577777776554445666666554
No 214
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.06 E-value=0.1 Score=58.56 Aligned_cols=113 Identities=10% Similarity=0.029 Sum_probs=65.7
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCHHHH
Q 008235 220 ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQ 298 (573)
Q Consensus 220 vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~~~~ 298 (573)
-|..---| -|||..-+.-++.+=...+. ......+...||+||+ .|..|+...+.+... ..+.+..++| ....
T Consensus 155 gIladd~g-lgkt~~ti~l~l~~~~~~~~-~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g---r~kd 228 (674)
T KOG1001|consen 155 GILADDMG-LGKTVKTIALILKQKLKSKE-EDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG---RTKD 228 (674)
T ss_pred ceEeeccc-cchHHHHHHHHHhcccCCcc-hhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc---cccc
Confidence 34455678 89998754333322111110 0011245678999997 566788877755533 3566666666 2233
Q ss_pred HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC
Q 008235 299 ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (573)
Q Consensus 299 ~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~ 344 (573)
...+. .++||++|++.|-. ..+.--..-.+|+||||.+-.
T Consensus 229 ~~el~--~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn 268 (674)
T KOG1001|consen 229 KSELN--SYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKN 268 (674)
T ss_pred cchhc--CCceEEeeHHHhhc----ccccceeEEEEEeccccccCC
Confidence 33344 58899999987742 221112234689999998876
No 215
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.05 E-value=0.21 Score=58.59 Aligned_cols=121 Identities=14% Similarity=0.062 Sum_probs=89.0
Q ss_pred HHHHHHHHHH-HHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCC-----CHHHHHHHHHhcCCCCCeE
Q 008235 412 EKILKGIQVL-DHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC-----IVSHIKNSVEADGRKRPAV 485 (573)
Q Consensus 412 ~k~~~l~~~L-~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~-----~~~~~l~~F~~~g~~~~l~ 485 (573)
.|...+.++| ......+. ..++|||+.-.....-+...|...++....+ +| ++...++.| .++. ...+
T Consensus 692 ~k~~~l~~ll~~~~~~~~~---~~kvlifsq~t~~l~il~~~l~~~~~~~~~l-dG~~~~~~r~~~i~~f-~~~~-~~~v 765 (866)
T COG0553 692 GKLQALDELLLDKLLEEGH---YHKVLIFSQFTPVLDLLEDYLKALGIKYVRL-DGSTPAKRRQELIDRF-NADE-EEKV 765 (866)
T ss_pred hHHHHHHHHHHHHHHhhcc---cccEEEEeCcHHHHHHHHHHHHhcCCcEEEE-eCCCChhhHHHHHHHh-hcCC-CCce
Confidence 5777777777 45544322 1299999999999999999999999766654 55 466789999 5552 2222
Q ss_pred EEEeccccC--CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcce--EEEEeccc
Q 008235 486 SMIDKDHIS--TAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGI--LHSFFTKD 539 (573)
Q Consensus 486 ~lvd~~s~r--GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~--~i~~~~~~ 539 (573)
.++..- +. ||+.-..++||+||+..++....|...|+-|-|+... ++-|++..
T Consensus 766 ~lls~k-agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 766 FLLSLK-AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred EEEEec-ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCC
Confidence 233232 23 8898999999999999999999999999999887544 55556654
No 216
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.98 E-value=0.21 Score=60.99 Aligned_cols=127 Identities=11% Similarity=0.056 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHhcC--CcEEEEeCCCchhHHHHH--HHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 203 VNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAW--IVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 203 ~t~iQ~~aip~il~g--~dvl~~A~TG~SGKTlaf--~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
+|+-|.+|+..++.. +-+++....| +|||.+. ++-++..+... .+..++.++||---|..+.+
T Consensus 836 Lt~~Qr~Av~~iLts~dr~~~IqG~AG-TGKTT~l~~i~~~~~~l~e~--------~g~~V~glAPTgkAa~~L~e---- 902 (1623)
T PRK14712 836 LTSGQRAATRMILETSDRFTVVQGYAG-VGKTTQFRAVMSAVNMLPES--------ERPRVVGLGPTHRAVGEMRS---- 902 (1623)
T ss_pred cCHHHHHHHHHHHhCCCceEEEEeCCC-CCHHHHHHHHHHHHHHHhhc--------cCceEEEEechHHHHHHHHH----
Confidence 599999999999975 6678888999 9999763 22223222211 36678899999766655532
Q ss_pred hhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCC-
Q 008235 279 LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG- 357 (573)
Q Consensus 279 l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~- 357 (573)
.|+....++ ..|.. . + .. -..+........+||||||= |++..++..++..++.
T Consensus 903 ---~Gi~A~TIa---------sfL~~-~-------~--~~--~~~~~~~~~~~~llIVDEAS-MV~~~~m~~ll~~~~~~ 957 (1623)
T PRK14712 903 ---AGVDAQTLA---------SFLHD-T-------Q--LQ--QRSGETPDFSNTLFLLDESS-MVGNTDMARAYALIAAG 957 (1623)
T ss_pred ---hCchHhhHH---------HHhcc-c-------c--ch--hhcccCCCCCCcEEEEEccc-cccHHHHHHHHHhhhhC
Confidence 133221111 11111 0 0 00 00111112345899999997 6666777777777754
Q ss_pred CCcEEEEecc
Q 008235 358 KPHTVVFNDC 367 (573)
Q Consensus 358 ~~q~l~~SAT 367 (573)
+.+++++.-+
T Consensus 958 garvVLVGD~ 967 (1623)
T PRK14712 958 GGRAVASGDT 967 (1623)
T ss_pred CCEEEEEcch
Confidence 5677766543
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.96 E-value=0.35 Score=45.98 Aligned_cols=52 Identities=10% Similarity=0.216 Sum_probs=35.2
Q ss_pred CCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHh
Q 008235 329 SGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL 380 (573)
Q Consensus 329 ~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l 380 (573)
++.++|+||-+-+... ..++..++..+.+..-.+++|||........+..+.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~ 137 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY 137 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh
Confidence 3467888888876654 567777777776666778899999876544444443
No 218
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.94 E-value=0.051 Score=58.44 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=44.1
Q ss_pred CCcEEEeCHHHHHHHHHc---CCCC---CCCccE-EEEeCcccccC------cch------HHHHH-Hhc--CCCCcEEE
Q 008235 306 EPEFLVSTPERLLKLVSL---KAID---VSGVSL-LVVDRLDSLSK------GDT------LSLIR-QSI--SGKPHTVV 363 (573)
Q Consensus 306 ~~~IlV~TP~rL~~~l~~---~~~~---l~~l~~-lViDEad~ll~------~~~------l~~Il-~~l--~~~~q~l~ 363 (573)
+.+|.++|-..|...+.+ ..+. +.+..+ ++-||||++-. .++ ++..+ ..+ .++--++.
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~le 160 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLE 160 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeeh
Confidence 688999999988766654 2233 444444 45699999865 111 11111 112 24445677
Q ss_pred EeccCCccHHHHHHHHhc
Q 008235 364 FNDCLTYTSVPAVQNLLL 381 (573)
Q Consensus 364 ~SAT~~~~~~~~~~~~l~ 381 (573)
||||+|. -..+...|-.
T Consensus 161 f~at~~k-~k~v~~ky~d 177 (812)
T COG3421 161 FSATIPK-EKSVEDKYED 177 (812)
T ss_pred hhhcCCc-cccHHHHhcc
Confidence 9999994 3444445433
No 219
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.90 E-value=0.11 Score=52.30 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=59.5
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhc-hhcc-CCCCCCcEEEEEcccHHHHHHHHHHHhh-hhcCCcEEEEeCCCCC
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIAR-KEKE-GFSFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAA 294 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~-~~~~-~~~~~~~~~Lil~PtreLa~Qi~~~~~~-l~~~~i~~~~~~gg~~ 294 (573)
.+++++.+|| .|||.. ++++... +... .....-|.++|-+|...=..-.|..+-. | +.... ....
T Consensus 62 p~lLivG~sn-nGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l---gaP~~---~~~~ 129 (302)
T PF05621_consen 62 PNLLIVGDSN-NGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL---GAPYR---PRDR 129 (302)
T ss_pred CceEEecCCC-CcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh---CcccC---CCCC
Confidence 5899999999 999974 3444322 1111 1111347778888876555555543332 3 22110 0011
Q ss_pred HHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-----cchHHHHHHhcCCCCcE
Q 008235 295 IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-----GDTLSLIRQSISGKPHT 361 (573)
Q Consensus 295 ~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-----~~~l~~Il~~l~~~~q~ 361 (573)
...... ....+|. --++++|||||.|.++. ...+...++.+....++
T Consensus 130 ~~~~~~---------------~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 130 VAKLEQ---------------QVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI 181 (302)
T ss_pred HHHHHH---------------HHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC
Confidence 110000 0112222 34588999999999887 55555666666555443
No 220
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=94.89 E-value=1.7 Score=49.58 Aligned_cols=141 Identities=11% Similarity=-0.004 Sum_probs=70.6
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC----CcEEEEeCCC
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF----GIHTVSLHPG 292 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~----~i~~~~~~gg 292 (573)
--.|+.-.-| -||||-. +..++.++..... .-.+||||||..-+ .-+...|.++ ..+ .|.|..+..=
T Consensus 697 sGcILAHcMG-LGKTlQV-vtflhTvL~c~kl-----g~ktaLvV~PlNt~-~NW~~EFekWm~~~e~~~~leV~eL~~v 768 (1567)
T KOG1015|consen 697 SGCILAHCMG-LGKTLQV-VTFLHTVLLCDKL-----GFKTALVVCPLNTA-LNWMNEFEKWMEGLEDDEKLEVSELATV 768 (1567)
T ss_pred cchHHHHhhc-ccceehh-hHHHHHHHHhhcc-----CCceEEEEcchHHH-HHHHHHHHHhcccccccccceeehhhhc
Confidence 3444445678 9999863 3333333322111 34589999996543 4455556554 211 3554443221
Q ss_pred CCHHHHH----HHhhcCCCcEEEe-CHHHHHHH------H-----HcCCCCCCCccEEEEeCcccccC-cchHHHHHHhc
Q 008235 293 AAIDHQI----TGLRSCEPEFLVS-TPERLLKL------V-----SLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSI 355 (573)
Q Consensus 293 ~~~~~~~----~~l~~~~~~IlV~-TP~rL~~~------l-----~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l 355 (573)
....... ++...+|+ +||| +--|.+.. . ....+.-..-++||.||+|.|-. ...+..-+..+
T Consensus 769 kr~e~R~~~L~~W~~~ggV-mIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~i 847 (1567)
T KOG1015|consen 769 KRPEERSYMLQRWQEDGGV-MIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSI 847 (1567)
T ss_pred cChHHHHHHHHHHHhcCCE-EEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHH
Confidence 2212222 23334444 3343 22121110 0 00112224568999999997776 66666666666
Q ss_pred CCCCcEEEEeccC
Q 008235 356 SGKPHTVVFNDCL 368 (573)
Q Consensus 356 ~~~~q~l~~SAT~ 368 (573)
...+++++ +.|.
T Consensus 848 rtkRRI~L-TGTP 859 (1567)
T KOG1015|consen 848 RTKRRIIL-TGTP 859 (1567)
T ss_pred HhheeEEe-ecCc
Confidence 65565555 5553
No 221
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=94.84 E-value=0.083 Score=57.78 Aligned_cols=120 Identities=12% Similarity=0.057 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCC----CHHHHHHHHHhcCCCCCeEE
Q 008235 411 EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC----IVSHIKNSVEADGRKRPAVS 486 (573)
Q Consensus 411 ~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~l~~F~~~g~~~~l~~ 486 (573)
..|+..|-.+|..+-.. +.++|+|+.--+-..-+-++|...++....+..+ ++..++++| +. ..+++.
T Consensus 1027 SgKL~~LDeLL~kLkae-----gHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDw-Q~--sdiFvF 1098 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAE-----GHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDW-QA--SDIFVF 1098 (1185)
T ss_pred ccceeeHHHHHHHhhcC-----CceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhc-cC--CceEEE
Confidence 45777777777776544 4599999998889999999999999998865322 566788899 65 444444
Q ss_pred EEeccccC--CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCc--ceEEEEeccc
Q 008235 487 MIDKDHIS--TAELEEYEVVIVPDFIISMKNYVEILTSMARHTVS--GILHSFFTKD 539 (573)
Q Consensus 487 lvd~~s~r--GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~--G~~i~~~~~~ 539 (573)
|. .|.|. ||++...+.||.||--.++..=.|-.-|+-|.|+. -.++-+++..
T Consensus 1099 LL-STRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1099 LL-STRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred EE-ecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 44 23234 88999999999999988887777888888888764 4566666654
No 222
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.81 E-value=0.14 Score=59.97 Aligned_cols=155 Identities=8% Similarity=0.026 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHh-----cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 204 NSWGIEFWKCYS-----SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 204 t~iQ~~aip~il-----~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
.++|...+.-+. .+.+-++...-| .|||+.-+.-+.. +...... ..+.+||+||+ +++.++.+.+..
T Consensus 340 r~yq~~g~~wl~~~l~~~~~~~ilaD~mg-lGKTiq~i~~l~~-~~~~~~~-----~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 340 RPYQLEGVNWLSELLRSNLLGGILADDMG-LGKTVQTIALLLS-LLESIKV-----YLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred HHHHHHHHHHHHHHHHhccCCCccccccc-chhHHHHHHHHHh-hhhcccC-----CCCCeEEEecH-HHHHHHHHHHhh
Confidence 677888765533 256677778999 9999875443333 2222111 14578999997 566778888877
Q ss_pred hhcCCcE-EEEeCCCCCH----HHHHHHhhcCC----CcEEEeCHHHHHHHH-HcCCCCCCCccEEEEeCcccccC-cch
Q 008235 279 LKAFGIH-TVSLHPGAAI----DHQITGLRSCE----PEFLVSTPERLLKLV-SLKAIDVSGVSLLVVDRLDSLSK-GDT 347 (573)
Q Consensus 279 l~~~~i~-~~~~~gg~~~----~~~~~~l~~~~----~~IlV~TP~rL~~~l-~~~~~~l~~l~~lViDEad~ll~-~~~ 347 (573)
+.. .++ +...+|.... ......+.... .+++++|-+.|...+ ....+.-....++|+||||++-. ...
T Consensus 412 ~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~ 490 (866)
T COG0553 412 FAP-DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSS 490 (866)
T ss_pred hCc-cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhH
Confidence 743 233 5566665431 33333333212 789999988776632 11223345578999999999776 222
Q ss_pred HHHHHHhcCCCCcEEEEeccC
Q 008235 348 LSLIRQSISGKPHTVVFNDCL 368 (573)
Q Consensus 348 l~~Il~~l~~~~q~l~~SAT~ 368 (573)
...-+..+..... +++|.|.
T Consensus 491 ~~~~l~~~~~~~~-~~LtgTP 510 (866)
T COG0553 491 EGKALQFLKALNR-LDLTGTP 510 (866)
T ss_pred HHHHHHHHhhcce-eeCCCCh
Confidence 2222224433333 6667775
No 223
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.78 E-value=0.19 Score=51.55 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=39.4
Q ss_pred CHHHHHHHHHH-hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHH
Q 008235 204 NSWGIEFWKCY-SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (573)
Q Consensus 204 t~iQ~~aip~i-l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa 269 (573)
++.|...+..+ ..+++++++.+|| |||| .++-.++..+...+ ...+++++-.+.||.
T Consensus 134 ~~~~~~~L~~~v~~~~~ilI~G~tG-SGKT-Tll~aL~~~~~~~~-------~~~rivtIEd~~El~ 191 (319)
T PRK13894 134 TAAQREAIIAAVRAHRNILVIGGTG-SGKT-TLVNAIINEMVIQD-------PTERVFIIEDTGEIQ 191 (319)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCC-CCHH-HHHHHHHHhhhhcC-------CCceEEEEcCCCccc
Confidence 45777777654 4568999999999 9999 55555555443221 245788888888873
No 224
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.75 E-value=0.88 Score=48.72 Aligned_cols=64 Identities=11% Similarity=0.162 Sum_probs=37.6
Q ss_pred eCHHHHHHHHHcCCCCCCCccEEEEeCcccccC----cchHHHHHHhc-CCCCcEEEEeccCCc-cHHHHHHHH
Q 008235 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSI-SGKPHTVVFNDCLTY-TSVPAVQNL 379 (573)
Q Consensus 312 ~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l-~~~~q~l~~SAT~~~-~~~~~~~~~ 379 (573)
.+|..+...+.. +.+.++|+||-+-+... ..++..++... .+..-.+++|||... .+.+.+..|
T Consensus 285 ~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 285 YDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred CCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh
Confidence 345555555542 34578999999876544 34555555522 233447888998764 345555555
No 225
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.75 E-value=0.094 Score=51.45 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=24.8
Q ss_pred ccEEEEeCcccccC----cchHHHHHHhcCC-CCcEEEEeccCCc
Q 008235 331 VSLLVVDRLDSLSK----GDTLSLIRQSISG-KPHTVVFNDCLTY 370 (573)
Q Consensus 331 l~~lViDEad~ll~----~~~l~~Il~~l~~-~~q~l~~SAT~~~ 370 (573)
+++|+|||+|.+.. ...+..++..+.. +...+++|++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 47899999998865 4455666665532 2224555666554
No 226
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.74 E-value=0.019 Score=53.36 Aligned_cols=124 Identities=22% Similarity=0.164 Sum_probs=55.0
Q ss_pred EEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh-hhcCCcEEEEeCCCCCHHHHH
Q 008235 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQI 299 (573)
Q Consensus 221 l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~-l~~~~i~~~~~~gg~~~~~~~ 299 (573)
++.|+-| -|||.+..+.+...+.. ....++|-+|+.+=+..+++.+.. +..++.+.... ......
T Consensus 1 VltA~RG-RGKSa~lGl~~a~l~~~---------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~----~~~~~~ 66 (177)
T PF05127_consen 1 VLTADRG-RGKSAALGLAAAALIQK---------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKK----KRIGQI 66 (177)
T ss_dssp -EEE-TT-SSHHHHHHHCCCCSSS--------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCC-CCHHHHHHHHHHHHHHh---------cCceEEEecCCHHHHHHHHHHHHhhccccccccccc----cccccc
Confidence 4689999 99998766544332221 125799999999888777776544 23233332000 000001
Q ss_pred HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCCCCcEEEEeccCCc
Q 008235 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY 370 (573)
Q Consensus 300 ~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~l~~SAT~~~ 370 (573)
..+...+..|-+-.|..+... ....++||||||=.+- .+.+..++... ..++||.|..-
T Consensus 67 ~~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp-~p~L~~ll~~~----~~vv~stTi~G 125 (177)
T PF05127_consen 67 IKLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP-LPLLKQLLRRF----PRVVFSTTIHG 125 (177)
T ss_dssp ------CCC--B--HHHHCCT-----------SCEEECTGGGS--HHHHHHHHCCS----SEEEEEEEBSS
T ss_pred cccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCC-HHHHHHHHhhC----CEEEEEeeccc
Confidence 111111456777788766321 1235899999997554 66666665443 36777888753
No 227
>PRK06893 DNA replication initiation factor; Validated
Probab=94.71 E-value=0.09 Score=51.36 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=29.6
Q ss_pred CCCccEEEEeCcccccC----cchHHHHHHhcCC-CCcEEEEeccCCcc
Q 008235 328 VSGVSLLVVDRLDSLSK----GDTLSLIRQSISG-KPHTVVFNDCLTYT 371 (573)
Q Consensus 328 l~~l~~lViDEad~ll~----~~~l~~Il~~l~~-~~q~l~~SAT~~~~ 371 (573)
+.+.++|||||+|.+.. ...+..++..+.. +.+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 34678999999998864 3345566655543 45677888877553
No 228
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.70 E-value=0.52 Score=46.43 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=56.4
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHH
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~ 297 (573)
..+++..++| +|||... ..+...+.. .+..++++ +..+|...+...+.. .+
T Consensus 100 ~~~~l~G~~G-tGKThLa-~aia~~l~~---------~g~~v~~i-t~~~l~~~l~~~~~~------------~~----- 150 (244)
T PRK07952 100 ASFIFSGKPG-TGKNHLA-AAICNELLL---------RGKSVLII-TVADIMSAMKDTFSN------------SE----- 150 (244)
T ss_pred ceEEEECCCC-CCHHHHH-HHHHHHHHh---------cCCeEEEE-EHHHHHHHHHHHHhh------------cc-----
Confidence 4688999999 9999643 334444443 24456555 444554443332110 00
Q ss_pred HHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC----cchHHHHHHhc-CCCCcEEEEeccCC
Q 008235 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSI-SGKPHTVVFNDCLT 369 (573)
Q Consensus 298 ~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l-~~~~q~l~~SAT~~ 369 (573)
.+...+++. +.++++|||||++.... ...+..|+..- .....+++.|---+
T Consensus 151 --------------~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~ 206 (244)
T PRK07952 151 --------------TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNM 206 (244)
T ss_pred --------------ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCH
Confidence 122233332 45688999999997655 33455565543 23566666665433
No 229
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.66 E-value=0.17 Score=52.23 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHhcC----CcEEEEeCCCchhHHHHHHHHHHHHHHh
Q 008235 203 VNSWGIEFWKCYSSA----KDILETSGSSSTIVQIAWIVATAADSIA 245 (573)
Q Consensus 203 ~t~iQ~~aip~il~g----~dvl~~A~TG~SGKTlaf~lp~l~~l~~ 245 (573)
..|||...|..++.. .-+++..|.| .|||... .-+...++.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G-~GK~~~A-~~~A~~llC 48 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAG-IGKRALA-ERLAAALLC 48 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCC-CCHHHHH-HHHHHHHcC
Confidence 478999999988764 3578899999 9999543 334444543
No 230
>PRK08727 hypothetical protein; Validated
Probab=94.61 E-value=0.092 Score=51.44 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=23.9
Q ss_pred CCccEEEEeCcccccC----cchHHHHHHhcCC-CCcEEEEeccCCc
Q 008235 329 SGVSLLVVDRLDSLSK----GDTLSLIRQSISG-KPHTVVFNDCLTY 370 (573)
Q Consensus 329 ~~l~~lViDEad~ll~----~~~l~~Il~~l~~-~~q~l~~SAT~~~ 370 (573)
.+..+|||||+|.+.. ...+..++..+.. ..++++.|...|.
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~ 138 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPD 138 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChh
Confidence 4457899999998875 2234445544432 3344444444443
No 231
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.57 E-value=0.28 Score=52.94 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=29.5
Q ss_pred CCCccEEEEeCcccccC----cchHHHHHHhcC-CCCcEEEEeccCCccH
Q 008235 328 VSGVSLLVVDRLDSLSK----GDTLSLIRQSIS-GKPHTVVFNDCLTYTS 372 (573)
Q Consensus 328 l~~l~~lViDEad~ll~----~~~l~~Il~~l~-~~~q~l~~SAT~~~~~ 372 (573)
+.++++|||||+|.+.. .+.+..++..+. .+.|+++.|-..|...
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 34678999999998764 456666666653 3456666655555433
No 232
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.55 E-value=0.25 Score=50.70 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHh-cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHH
Q 008235 204 NSWGIEFWKCYS-SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (573)
Q Consensus 204 t~iQ~~aip~il-~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa 269 (573)
++.|...+..+. .+.+++++.+|| ||||. ++-.++..+...+ .+-+++++=.+.||.
T Consensus 130 ~~~~~~~L~~~v~~~~nilI~G~tG-SGKTT-ll~aL~~~i~~~~-------~~~rivtiEd~~El~ 187 (323)
T PRK13833 130 TEAQASVIRSAIDSRLNIVISGGTG-SGKTT-LANAVIAEIVASA-------PEDRLVILEDTAEIQ 187 (323)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCC-CCHHH-HHHHHHHHHhcCC-------CCceEEEecCCcccc
Confidence 557777765554 458999999999 99995 3444555543221 244788888888874
No 233
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.45 E-value=0.13 Score=44.81 Aligned_cols=17 Identities=12% Similarity=-0.052 Sum_probs=14.7
Q ss_pred CCcEEEEeCCCchhHHHH
Q 008235 217 AKDILETSGSSSTIVQIA 234 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (573)
+..+++.+|+| +|||..
T Consensus 2 ~~~~~l~G~~G-~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPG-SGKTTL 18 (148)
T ss_pred CCEEEEECCCC-CcHHHH
Confidence 46789999999 999975
No 234
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.42 E-value=0.4 Score=59.38 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHhcC--CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh
Q 008235 203 VNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280 (573)
Q Consensus 203 ~t~iQ~~aip~il~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~ 280 (573)
+++.|.+|+..++.+ +-+++....| +|||... -.++..+...... .+..++.++||---|..+.+
T Consensus 968 Lt~~Q~~Av~~il~s~dr~~~I~G~AG-TGKTT~l-~~v~~~~~~l~~~-----~~~~V~glAPTgrAAk~L~e------ 1034 (1747)
T PRK13709 968 LTSGQRAATRMILESTDRFTVVQGYAG-VGKTTQF-RAVMSAVNTLPES-----ERPRVVGLGPTHRAVGEMRS------ 1034 (1747)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEEeCCC-CCHHHHH-HHHHHHHHHhhcc-----cCceEEEECCcHHHHHHHHh------
Confidence 599999999999986 4567778999 9999653 2333333211111 35678899999766654432
Q ss_pred cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCC-CC
Q 008235 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP 359 (573)
Q Consensus 281 ~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~-~~ 359 (573)
.|+....++ ..|.. .+. ....+......-++||||||= |++...+..++..++. +.
T Consensus 1035 -~Gi~A~TI~---------s~L~~--~~~----------~~~~~~~~~~~~~llIVDEaS-Mv~~~~m~~Ll~~~~~~ga 1091 (1747)
T PRK13709 1035 -AGVDAQTLA---------SFLHD--TQL----------QQRSGETPDFSNTLFLLDESS-MVGNTDMARAYALIAAGGG 1091 (1747)
T ss_pred -cCcchhhHH---------HHhcc--ccc----------ccccccCCCCCCcEEEEEccc-cccHHHHHHHHHhhhcCCC
Confidence 244322211 11110 000 000111112334899999996 6667778888888764 67
Q ss_pred cEEEEecc
Q 008235 360 HTVVFNDC 367 (573)
Q Consensus 360 q~l~~SAT 367 (573)
++|++.-+
T Consensus 1092 rvVLVGD~ 1099 (1747)
T PRK13709 1092 RAVSSGDT 1099 (1747)
T ss_pred EEEEecch
Confidence 77777544
No 235
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.39 E-value=0.35 Score=49.59 Aligned_cols=135 Identities=11% Similarity=0.123 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHhc----CC---cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHH
Q 008235 203 VNSWGIEFWKCYSS----AK---DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (573)
Q Consensus 203 ~t~iQ~~aip~il~----g~---dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~ 275 (573)
..|||..+|..+.+ |+ -+++.+|.| +||+.. ..-+...++...... .+ -| ..
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G-~GK~~l-A~~lA~~LlC~~~~~----~~-----~c----------~~ 63 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRLGHGLLICGPEG-LGKRAV-ALALAEHVLASGPDP----AA-----AQ----------RT 63 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCcceeEeeECCCC-CCHHHH-HHHHHHHHhCCCCCC----CC-----cc----------hH
Confidence 38899999987753 43 488999999 999854 334455555432110 01 11 12
Q ss_pred Hhhh---hcCCcEEEEeCCC-CCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC--cchHH
Q 008235 276 CKPL---KAFGIHTVSLHPG-AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLS 349 (573)
Q Consensus 276 ~~~l---~~~~i~~~~~~gg-~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~--~~~l~ 349 (573)
|+.+ .+.++..+..... .... . ...|.|-.--.+.+.+..... ....+.+|||+||.|-. ...+.
T Consensus 64 c~~~~~g~HPD~~~i~~~p~~~~~k-------~-~~~I~idqIR~l~~~~~~~p~-~g~~kV~iI~~ae~m~~~AaNaLL 134 (319)
T PRK08769 64 RQLIAAGTHPDLQLVSFIPNRTGDK-------L-RTEIVIEQVREISQKLALTPQ-YGIAQVVIVDPADAINRAACNALL 134 (319)
T ss_pred HHHHhcCCCCCEEEEecCCCccccc-------c-cccccHHHHHHHHHHHhhCcc-cCCcEEEEeccHhhhCHHHHHHHH
Confidence 2222 2224444321110 0000 0 011222222223333332222 34678999999999986 66677
Q ss_pred HHHHhcCCCCcEEEEecc
Q 008235 350 LIRQSISGKPHTVVFNDC 367 (573)
Q Consensus 350 ~Il~~l~~~~q~l~~SAT 367 (573)
++++.-+++..+++.|..
T Consensus 135 KtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 135 KTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HHhhCCCCCCeEEEEECC
Confidence 777776666666666543
No 236
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.34 E-value=0.83 Score=48.97 Aligned_cols=48 Identities=8% Similarity=0.190 Sum_probs=29.9
Q ss_pred cEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHH
Q 008235 332 SLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNL 379 (573)
Q Consensus 332 ~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~ 379 (573)
++||||.|-++.. .+++..+...+.++.-+++++||...+..+.++.|
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 6788888854443 44555665555566666777777766555555554
No 237
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.34 E-value=0.1 Score=52.04 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=35.6
Q ss_pred CCCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccCCc
Q 008235 327 DVSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTY 370 (573)
Q Consensus 327 ~l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~~~ 370 (573)
....++.+|+||||.|-. ...+++.++..+....+++....+..
T Consensus 126 ~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhh
Confidence 456678999999999987 88899999988877788887666543
No 238
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.26 E-value=0.17 Score=52.08 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=28.0
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~ 273 (573)
+.++++..||| +|||... ..+...+.. .|..++++ +..+|..++.
T Consensus 183 ~~~Lll~G~~G-tGKThLa-~aIa~~l~~---------~g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTG-TGKTFLS-NCIAKELLD---------RGKSVIYR-TADELIEILR 227 (329)
T ss_pred CCcEEEECCCC-CcHHHHH-HHHHHHHHH---------CCCeEEEE-EHHHHHHHHH
Confidence 58899999999 9999642 233343432 24456554 4456655554
No 239
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.26 E-value=0.39 Score=46.53 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=31.3
Q ss_pred CCCccEEEEeCcccccC----cchHHHHHHhcC-CCCcEEEEeccCCccH
Q 008235 328 VSGVSLLVVDRLDSLSK----GDTLSLIRQSIS-GKPHTVVFNDCLTYTS 372 (573)
Q Consensus 328 l~~l~~lViDEad~ll~----~~~l~~Il~~l~-~~~q~l~~SAT~~~~~ 372 (573)
+...++|+||.+|.+.+ ...+..+++.+. .+.|+++.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 44688999999999877 456666666653 4567777776766653
No 240
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.23 E-value=0.22 Score=48.15 Aligned_cols=18 Identities=6% Similarity=-0.219 Sum_probs=15.2
Q ss_pred CCcEEEEeCCCchhHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (573)
+..+++..|+| +|||...
T Consensus 38 ~~~lll~G~~G-~GKT~la 55 (226)
T TIGR03420 38 DRFLYLWGESG-SGKSHLL 55 (226)
T ss_pred CCeEEEECCCC-CCHHHHH
Confidence 47899999999 9999653
No 241
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.23 E-value=0.46 Score=50.63 Aligned_cols=30 Identities=10% Similarity=-0.090 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCchhHHHHH
Q 008235 205 SWGIEFWKCYSSAKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 205 ~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf 235 (573)
......+..+..++++++..|+| +|||...
T Consensus 182 ~~le~l~~~L~~~~~iil~GppG-tGKT~lA 211 (459)
T PRK11331 182 TTIETILKRLTIKKNIILQGPPG-VGKTFVA 211 (459)
T ss_pred HHHHHHHHHHhcCCCEEEECCCC-CCHHHHH
Confidence 34455667777899999999999 9999654
No 242
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.15 E-value=0.61 Score=53.38 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=23.8
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcC-CCCcEEEEecc
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSIS-GKPHTVVFNDC 367 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~-~~~q~l~~SAT 367 (573)
..+.+|||||+|.|.. .+.|..+++... ...+++++..+
T Consensus 868 r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEec
Confidence 4567999999999986 444555555432 33455544333
No 243
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.10 E-value=0.25 Score=48.01 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=26.7
Q ss_pred CccEEEEeCcccccC--cchHHHHHHhcCCCCc-EEEEeccCCc
Q 008235 330 GVSLLVVDRLDSLSK--GDTLSLIRQSISGKPH-TVVFNDCLTY 370 (573)
Q Consensus 330 ~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q-~l~~SAT~~~ 370 (573)
+.++|||||+|.+-. ...+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 467899999998754 4455556655443333 5777777653
No 244
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.03 E-value=0.18 Score=47.24 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=27.3
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHH
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~ 273 (573)
.++++++..|+| +|||... ..+...+... |..++++ ++.+|...+.
T Consensus 46 ~~~~l~l~G~~G-~GKThLa-~ai~~~~~~~---------g~~v~f~-~~~~L~~~l~ 91 (178)
T PF01695_consen 46 NGENLILYGPPG-TGKTHLA-VAIANEAIRK---------GYSVLFI-TASDLLDELK 91 (178)
T ss_dssp C--EEEEEESTT-SSHHHHH-HHHHHHHHHT---------T--EEEE-EHHHHHHHHH
T ss_pred cCeEEEEEhhHh-HHHHHHH-HHHHHHhccC---------CcceeEe-ecCceecccc
Confidence 468999999999 9999764 3344444432 4455554 5566765553
No 245
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.02 E-value=0.32 Score=55.23 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hc
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA 281 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~ 281 (573)
+++-|.+|+-. ...++++.|+.| ||||.+. +.-+.++..... ..+-.+|+|+.|+..|..+.+.+... +.
T Consensus 197 L~~~Q~~av~~--~~~~~lV~agaG-SGKT~vl-~~r~ayLl~~~~-----~~~~~IL~ltft~~AA~em~eRL~~~lg~ 267 (684)
T PRK11054 197 LNPSQARAVVN--GEDSLLVLAGAG-SGKTSVL-VARAGWLLARGQ-----AQPEQILLLAFGRQAAEEMDERIRERLGT 267 (684)
T ss_pred CCHHHHHHHhC--CCCCeEEEEeCC-CCHHHHH-HHHHHHHHHhCC-----CCHHHeEEEeccHHHHHHHHHHHHHhcCC
Confidence 79999999853 346789999999 9999874 334444443211 13458999999999999999877653 32
Q ss_pred CCcEEEE
Q 008235 282 FGIHTVS 288 (573)
Q Consensus 282 ~~i~~~~ 288 (573)
.++.+..
T Consensus 268 ~~v~v~T 274 (684)
T PRK11054 268 EDITART 274 (684)
T ss_pred CCcEEEe
Confidence 2444443
No 246
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.88 E-value=0.58 Score=47.66 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=37.4
Q ss_pred CHHHHHHHHH-HhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHH
Q 008235 204 NSWGIEFWKC-YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (573)
Q Consensus 204 t~iQ~~aip~-il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa 269 (573)
++-|...+.. +..+++++++.+|| ||||.. +-.++..+...+ ..-+++++-.+.||.
T Consensus 118 ~~~~~~~L~~~v~~~~~ilI~G~tG-SGKTTl-l~al~~~i~~~~-------~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 118 TAAQRDVLREAVLARKNILVVGGTG-SGKTTL-ANALLAEIAKND-------PTDRVVIIEDTRELQ 175 (299)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCC-CCHHHH-HHHHHHHhhccC-------CCceEEEECCchhhc
Confidence 3455555544 44468999999999 999954 444554443321 244788888888884
No 247
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.84 E-value=0.56 Score=50.74 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=25.7
Q ss_pred CccEEEEeCcccccC----cchHHHHHHhcC-CCCcEEEEeccCCcc
Q 008235 330 GVSLLVVDRLDSLSK----GDTLSLIRQSIS-GKPHTVVFNDCLTYT 371 (573)
Q Consensus 330 ~l~~lViDEad~ll~----~~~l~~Il~~l~-~~~q~l~~SAT~~~~ 371 (573)
++++|||||+|.+.. ...+..++..+- ...++++.|.+.|..
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~ 257 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKE 257 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHH
Confidence 577999999998765 234555555543 345655544444433
No 248
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.81 E-value=0.28 Score=44.25 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=25.2
Q ss_pred CCccEEEEeCcccccC-------------cchHHHHHHhcCCCCcEEEEeccCCc
Q 008235 329 SGVSLLVVDRLDSLSK-------------GDTLSLIRQSISGKPHTVVFNDCLTY 370 (573)
Q Consensus 329 ~~l~~lViDEad~ll~-------------~~~l~~Il~~l~~~~q~l~~SAT~~~ 370 (573)
....++||||++.+++ ...+..+...+.....++++....+.
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 5678999999998754 23444445454444445555554443
No 249
>PRK06921 hypothetical protein; Provisional
Probab=93.77 E-value=0.35 Score=48.31 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=27.4
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHH
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi 272 (573)
.+..+++..++| +|||... ..+...+... .+..++++. ..+|..++
T Consensus 116 ~~~~l~l~G~~G-~GKThLa-~aia~~l~~~--------~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPG-SGKTHLL-TAAANELMRK--------KGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCC-CcHHHHH-HHHHHHHhhh--------cCceEEEEE-HHHHHHHH
Confidence 357899999999 9999542 3334444321 144566654 44555444
No 250
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.73 E-value=0.24 Score=52.59 Aligned_cols=144 Identities=11% Similarity=0.110 Sum_probs=79.6
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHH-HHHHHHHHHhhh-hcCCcEEEEeCCCCCHHH
Q 008235 220 ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQE-KAAKVRSVCKPL-KAFGIHTVSLHPGAAIDH 297 (573)
Q Consensus 220 vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Ptre-La~Qi~~~~~~l-~~~~i~~~~~~gg~~~~~ 297 (573)
.+..++.| ||||.+.++-++..+.... .+.++|++-||.. |..-++..+... ..+|+....-....+.
T Consensus 4 ~i~~Ggrg-SGKS~~~~~~~~~~~~~~~-------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~-- 73 (396)
T TIGR01547 4 IIAKGGRR-SGKTFAIALKLVEKLAINK-------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM-- 73 (396)
T ss_pred EEEeCCCC-cccHHHHHHHHHHHHHhcC-------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--
Confidence 56778999 9999999888887777641 2567899989877 555555655543 3334321111111100
Q ss_pred HHHHhhcCCCcEEEeCH-HHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCC--CCcEEEEeccCCccHHH
Q 008235 298 QITGLRSCEPEFLVSTP-ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG--KPHTVVFNDCLTYTSVP 374 (573)
Q Consensus 298 ~~~~l~~~~~~IlV~TP-~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~--~~q~l~~SAT~~~~~~~ 374 (573)
.+ .+...|..|++..- +.... + .....+.++.+|||..+- .+.+..++..++. ..+.+++|.|.+....-
T Consensus 74 ~i-~~~~~g~~i~f~g~~d~~~~-i----k~~~~~~~~~idEa~~~~-~~~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w 146 (396)
T TIGR01547 74 EI-KILNTGKKFIFKGLNDKPNK-L----KSGAGIAIIWFEEASQLT-FEDIKELIPRLRETGGKKFIIFSSNPESPLHW 146 (396)
T ss_pred EE-EecCCCeEEEeecccCChhH-h----hCcceeeeehhhhhhhcC-HHHHHHHHHHhhccCCccEEEEEcCcCCCccH
Confidence 00 01111234444332 11111 1 112336899999999875 5566667666642 22247788886653334
Q ss_pred HHHHHh
Q 008235 375 AVQNLL 380 (573)
Q Consensus 375 ~~~~~l 380 (573)
+...|+
T Consensus 147 ~~~~f~ 152 (396)
T TIGR01547 147 VKKRFI 152 (396)
T ss_pred HHHHHH
Confidence 444444
No 251
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.70 E-value=0.3 Score=52.63 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=30.1
Q ss_pred CCccEEEEeCcccccC----cchHHHHHHhc-CCCCcEEEEeccCCccHHHH
Q 008235 329 SGVSLLVVDRLDSLSK----GDTLSLIRQSI-SGKPHTVVFNDCLTYTSVPA 375 (573)
Q Consensus 329 ~~l~~lViDEad~ll~----~~~l~~Il~~l-~~~~q~l~~SAT~~~~~~~~ 375 (573)
.++++|+|||+|.+.. ...+..+++.+ ....|+++.|.+.|..+..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 4678999999998865 44555665544 34566666665555554433
No 252
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.48 E-value=0.099 Score=50.07 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=31.3
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccCC
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLT 369 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~~ 369 (573)
.+.+.+|+||||.|-+ ...+++.++..+...++.+...+..
T Consensus 112 grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSE 154 (333)
T ss_pred CceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchh
Confidence 6678999999999998 7778888887776666666544443
No 253
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=93.42 E-value=0.46 Score=52.99 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=58.9
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
.+.++||.|+|++.|.++++.+... ++.+..++|+.+..+.. ..++++..+||||| +.+. ..+++.++
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~---g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~a-rGIDip~V 326 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH---GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAA-RGLHIDGV 326 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc---CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhh-cCCCccCC
Confidence 3568999999999999998877665 78999999998865443 44556679999999 3444 45788999
Q ss_pred cEEEEeCc
Q 008235 332 SLLVVDRL 339 (573)
Q Consensus 332 ~~lViDEa 339 (573)
+++|.-..
T Consensus 327 ~~VInyd~ 334 (572)
T PRK04537 327 KYVYNYDL 334 (572)
T ss_pred CEEEEcCC
Confidence 99886543
No 254
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.41 E-value=0.48 Score=53.45 Aligned_cols=140 Identities=13% Similarity=0.090 Sum_probs=81.8
Q ss_pred CHHHHH---HHHHHhcC--CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 204 NSWGIE---FWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 204 t~iQ~~---aip~il~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
|.-|.+ .+..++.+ +-+++.|.-| =|||.+..|.+. .+.... ....++|.+||.+=++.+...+.+
T Consensus 213 T~dQ~~~l~~~~~l~~~~~~~~vlTAdRG-RGKSA~lGi~~~-~~~~~~-------~~~~iiVTAP~~~nv~~Lf~fa~~ 283 (758)
T COG1444 213 TEDQAEALEILERLLDAPKRALVLTADRG-RGKSAALGIALA-AAARLA-------GSVRIIVTAPTPANVQTLFEFAGK 283 (758)
T ss_pred ChhHHHHHHHHHHHHcCCCceEEEEcCCC-CcHhHHHhHHHH-HHHHhc-------CCceEEEeCCCHHHHHHHHHHHHH
Confidence 444555 44555555 3577779999 999998887763 222221 145899999999988877766544
Q ss_pred -hhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCC
Q 008235 279 -LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG 357 (573)
Q Consensus 279 -l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~ 357 (573)
|..+|.+-........ ...........|=+-+|.... ..-++||||||=.|. .+.+..++...
T Consensus 284 ~l~~lg~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp-lplL~~l~~~~-- 347 (758)
T COG1444 284 GLEFLGYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP-LPLLHKLLRRF-- 347 (758)
T ss_pred hHHHhCCcccccccccc---ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC-hHHHHHHHhhc--
Confidence 4334433222211100 000011012335555664331 116899999997655 66666766553
Q ss_pred CCcEEEEeccCCc
Q 008235 358 KPHTVVFNDCLTY 370 (573)
Q Consensus 358 ~~q~l~~SAT~~~ 370 (573)
+.++||.|+..
T Consensus 348 --~rv~~sTTIhG 358 (758)
T COG1444 348 --PRVLFSTTIHG 358 (758)
T ss_pred --CceEEEeeecc
Confidence 57899999863
No 255
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.38 E-value=1.2 Score=52.29 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=63.3
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
++.+++|++|+++-+..+++.++.+. .++++..++|+++..... ..+.++..+|||||. .+. ..+++.++
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~-p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie-~GIDIp~v 731 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELV-PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIE-TGIDIPNA 731 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cccccccC
Confidence 36689999999998888888777652 268899999998865433 455667899999994 333 45789999
Q ss_pred cEEEEeCcccc
Q 008235 332 SLLVVDRLDSL 342 (573)
Q Consensus 332 ~~lViDEad~l 342 (573)
++||++.+|++
T Consensus 732 ~~VIi~~a~~~ 742 (926)
T TIGR00580 732 NTIIIERADKF 742 (926)
T ss_pred CEEEEecCCCC
Confidence 99999999864
No 256
>PRK08116 hypothetical protein; Validated
Probab=93.32 E-value=0.96 Score=45.27 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=25.9
Q ss_pred CCCccEEEEeCcccc--cC--cchHHHHHHhc-CCCCcEEEEeccCCcc
Q 008235 328 VSGVSLLVVDRLDSL--SK--GDTLSLIRQSI-SGKPHTVVFNDCLTYT 371 (573)
Q Consensus 328 l~~l~~lViDEad~l--l~--~~~l~~Il~~l-~~~~q~l~~SAT~~~~ 371 (573)
+.+.++||||+++.- -+ ...+..|+... ....++++.|...+..
T Consensus 176 l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~e 224 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEE 224 (268)
T ss_pred hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHH
Confidence 355789999999632 22 44555566543 3445666666554443
No 257
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.21 E-value=1.7 Score=45.48 Aligned_cols=129 Identities=11% Similarity=0.076 Sum_probs=63.5
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCH
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAI 295 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~ 295 (573)
++-+.++.||| -|||.+..=-+....+... ....+||-+-|--.+. .++++.++. +++.+..++.....
T Consensus 203 ~~vi~LVGPTG-VGKTTTlAKLAar~~~~~~-------~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv~~~~el 272 (407)
T COG1419 203 KRVIALVGPTG-VGKTTTLAKLAARYVMLKK-------KKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVVYSPKEL 272 (407)
T ss_pred CcEEEEECCCC-CcHHHHHHHHHHHHHhhcc-------CcceEEEEeccchhhH--HHHHHHHHHHhCCceEEecCHHHH
Confidence 67889999999 9999764321111111111 2345666666533321 233333322 25555554444444
Q ss_pred HHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCcc
Q 008235 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYT 371 (573)
Q Consensus 296 ~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~ 371 (573)
...+..+ .++++|.||=|-+=.. ..++..++....+.--.+.+|||....
T Consensus 273 ~~ai~~l--------------------------~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~ 326 (407)
T COG1419 273 AEAIEAL--------------------------RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYE 326 (407)
T ss_pred HHHHHHh--------------------------hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchH
Confidence 4433333 3445555555543322 344444444443334456677776543
Q ss_pred -HHHHHHHHhc
Q 008235 372 -SVPAVQNLLL 381 (573)
Q Consensus 372 -~~~~~~~~l~ 381 (573)
+.+....|-.
T Consensus 327 dlkei~~~f~~ 337 (407)
T COG1419 327 DLKEIIKQFSL 337 (407)
T ss_pred HHHHHHHHhcc
Confidence 4445555433
No 258
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.69 Score=48.00 Aligned_cols=139 Identities=14% Similarity=0.059 Sum_probs=74.1
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHH
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~ 297 (573)
+|++...|.| +|||+.. |+||. ..|+..+..+||.-..-
T Consensus 385 RNilfyGPPG-TGKTm~A------------------------------relAr----------~SGlDYA~mTGGDVAPl 423 (630)
T KOG0742|consen 385 RNILFYGPPG-TGKTMFA------------------------------RELAR----------HSGLDYAIMTGGDVAPL 423 (630)
T ss_pred hheeeeCCCC-CCchHHH------------------------------HHHHh----------hcCCceehhcCCCcccc
Confidence 7999999999 9999753 23432 12777788888753211
Q ss_pred HHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-------cchHHHHHHhc-----CCCCcEEEEe
Q 008235 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-------GDTLSLIRQSI-----SGKPHTVVFN 365 (573)
Q Consensus 298 ~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-------~~~l~~Il~~l-----~~~~q~l~~S 365 (573)
-... |+---.|.|+-.... +=-+|.|||||.++- .+..+.-++.+ ...+-++++=
T Consensus 424 G~qa---------VTkiH~lFDWakkS~----rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvl 490 (630)
T KOG0742|consen 424 GAQA---------VTKIHKLFDWAKKSR----RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVL 490 (630)
T ss_pred chHH---------HHHHHHHHHHHhhcc----cceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEe
Confidence 1111 111122344433221 122788999998875 33333333332 2345567766
Q ss_pred ccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEE-EcCChhHHHHHHHHHHHHHhccCC
Q 008235 366 DCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN-VCASDEEKILKGIQVLDHAYGDHF 429 (573)
Q Consensus 366 AT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~-~~~~~~~k~~~l~~~L~~~~~~~~ 429 (573)
||-.+.-.+. .....|.+.+. .++.+++++..|.-.|..|+....
T Consensus 491 AtNrpgdlDs-------------------AV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~ 536 (630)
T KOG0742|consen 491 ATNRPGDLDS-------------------AVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPA 536 (630)
T ss_pred ccCCccchhH-------------------HHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcC
Confidence 7744321111 11122222222 234577888888778888775443
No 259
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.19 E-value=0.67 Score=58.80 Aligned_cols=124 Identities=10% Similarity=0.029 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHHhcCC--cEEEEeCCCchhHHHHHH--HHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHh
Q 008235 202 FVNSWGIEFWKCYSSAK--DILETSGSSSTIVQIAWI--VATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (573)
Q Consensus 202 ~~t~iQ~~aip~il~g~--dvl~~A~TG~SGKTlaf~--lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~ 277 (573)
.+|+.|..|+..++.+. -+++..+.| +|||.... +-.+..+... .+..++.++||-.-|.++.+
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AG-tGKTt~l~~~~~~i~~~~~~--------~g~~v~glApT~~Aa~~L~~--- 1086 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAG-VGKTTMLESRYKPVLQAFES--------EQLQVIGLAPTHEAVGELKS--- 1086 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCC-CCHHHhHHHHHHHHHHHHHh--------cCCeEEEEeChHHHHHHHHh---
Confidence 35999999999998764 456678999 99996541 1222222221 36789999999766655532
Q ss_pred hhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcC-
Q 008235 278 PLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS- 356 (573)
Q Consensus 278 ~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~- 356 (573)
.|+....+. ..|.. ... ......+....+||||||= |++..++..++..+.
T Consensus 1087 ----~g~~a~Ti~---------s~l~~--~~~------------~~~~~~~~~~~v~ivDEas-Mv~~~~~~~l~~~~~~ 1138 (1960)
T TIGR02760 1087 ----AGVQAQTLD---------SFLTD--ISL------------YRNSGGDFRNTLFILDESS-MVSNFQLTHATELVQK 1138 (1960)
T ss_pred ----cCCchHhHH---------HHhcC--ccc------------ccccCCCCcccEEEEEccc-cccHHHHHHHHHhccC
Confidence 133321110 01100 000 0011124456899999997 666777777777653
Q ss_pred CCCcEEEEe
Q 008235 357 GKPHTVVFN 365 (573)
Q Consensus 357 ~~~q~l~~S 365 (573)
...+++++.
T Consensus 1139 ~~ak~vlvG 1147 (1960)
T TIGR02760 1139 SGSRAVSLG 1147 (1960)
T ss_pred CCCEEEEeC
Confidence 345555553
No 260
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.16 E-value=0.24 Score=56.88 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
+|-|.+|+.. ....++|.|+.| ||||.+.. --+.++..... ...-.+|+|+-|+..|..+.+.+..+
T Consensus 11 n~~Q~~av~~--~~g~~lV~AgaG-SGKT~vl~-~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 11 NDKQREAVAA--PLGNMLVLAGAG-SGKTRVLV-HRIAWLMQVEN-----ASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred CHHHHHHHhC--CCCCEEEEecCC-CCHHHHHH-HHHHHHHHcCC-----CChhHeEeeeccHHHHHHHHHHHHHH
Confidence 9999999864 346899999999 99998743 33344443211 12457999999999999999988776
No 261
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.07 E-value=0.73 Score=47.53 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=25.0
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEE
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVF 364 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~ 364 (573)
...++|||||+|.+-+ ...+..++...+....+++.
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~ 161 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIA 161 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEE
Confidence 4567999999998865 55566677666655655543
No 262
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.06 E-value=1.4 Score=40.29 Aligned_cols=50 Identities=8% Similarity=0.059 Sum_probs=38.1
Q ss_pred CCCccEEEEeCcccccC-----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHH
Q 008235 328 VSGVSLLVVDRLDSLSK-----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377 (573)
Q Consensus 328 l~~l~~lViDEad~ll~-----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~ 377 (573)
....++||+||+=..+. .+++..+++..|...-+++.+-..|+++.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999987755 667777888777777778877778877666553
No 263
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.04 E-value=0.23 Score=56.58 Aligned_cols=68 Identities=9% Similarity=0.001 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
+++-|.+|+.. ....++|.|+.| ||||.+..- -+.++..... ...-++|+|+.|+.-|..+.+.+..+
T Consensus 3 Ln~~Q~~av~~--~~g~~lV~AgpG-SGKT~vL~~-Ria~Li~~~~-----v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 3 LNPGQQQAVEF--VTGPCLVLAGAG-SGKTRVITN-KIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCC-CCHHHHHHH-HHHHHHHhcC-----CCHHHeeeEechHHHHHHHHHHHHHH
Confidence 58899999865 356889999999 999988443 3444443210 12447999999999999999888764
No 264
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=92.95 E-value=0.21 Score=57.43 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
++|-|.+|+.. ....++|.|+.| ||||.+. .--+.++..... .....+|+|+.|+..|..+.+.+..+
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaG-SGKT~~L-~~Ria~Li~~~~-----v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 5 LNDKQREAVAA--PPGNLLVLAGAG-SGKTRVL-THRIAWLLSVEN-----ASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cCHHHHHHHcC--CCCCEEEEecCC-CCHHHHH-HHHHHHHHHcCC-----CCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 48999999854 356899999999 9999874 333444443211 13457999999999999999988776
No 265
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.95 E-value=0.61 Score=51.30 Aligned_cols=70 Identities=16% Similarity=0.325 Sum_probs=54.3
Q ss_pred cEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccE
Q 008235 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSL 333 (573)
Q Consensus 257 ~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~ 333 (573)
.++||.|.|+..|..+...+... |+++..+||+.+.... ...++++..+|+||| |.. ...+++.++.+
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~---g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaT-----Dva-aRGiDi~~v~~ 344 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKR---GFKVAALHGDLPQEERDRALEKFKDGELRVLVAT-----DVA-ARGLDIPDVSH 344 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHC---CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEe-----chh-hccCCccccce
Confidence 36999999999999887766665 8999999999886543 455667789999999 333 34577777777
Q ss_pred EE
Q 008235 334 LV 335 (573)
Q Consensus 334 lV 335 (573)
||
T Consensus 345 Vi 346 (513)
T COG0513 345 VI 346 (513)
T ss_pred eE
Confidence 64
No 266
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.92 E-value=1.1 Score=47.55 Aligned_cols=24 Identities=8% Similarity=-0.028 Sum_probs=17.4
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHH
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADS 243 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l 243 (573)
.++++.+|+| +|||.. +--++..+
T Consensus 56 ~~~lI~G~~G-tGKT~l-~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPG-TGKTTT-VKKVFEEL 79 (394)
T ss_pred CeEEEECCCC-CCHHHH-HHHHHHHH
Confidence 6799999999 999975 33344433
No 267
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.81 E-value=0.86 Score=52.77 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=27.9
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccCC
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLT 369 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~~ 369 (573)
...+++||||||+|-. ...|.++++..+....+|+.+ |-+
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t-t~~ 160 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT-TEP 160 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe-CCh
Confidence 5678999999999886 566666777666555555543 433
No 268
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=92.77 E-value=1.5 Score=49.53 Aligned_cols=115 Identities=22% Similarity=0.247 Sum_probs=77.8
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
.+.++||+|+|+..|..+.+.+... |+.+..++|+...... ...++.+.++|+||| +.+. ..+++..+
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~---gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP~v 511 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL---GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLPEV 511 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh---ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeCCC
Confidence 4778999999999999998888765 8888889888765432 345566789999999 3343 45788999
Q ss_pred cEEEEeCcccccCcchHHHHHHhcC-----CCCcEEEEeccCCccHHHHHHH
Q 008235 332 SLLVVDRLDSLSKGDTLSLIRQSIS-----GKPHTVVFNDCLTYTSVPAVQN 378 (573)
Q Consensus 332 ~~lViDEad~ll~~~~l~~Il~~l~-----~~~q~l~~SAT~~~~~~~~~~~ 378 (573)
+++|+-++|...-.......++.+. .....++|-...+..+...+..
T Consensus 512 ~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 512 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred cEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHHH
Confidence 9999999986432222333333331 2334566655666555444433
No 269
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.72 E-value=0.16 Score=55.71 Aligned_cols=123 Identities=12% Similarity=0.116 Sum_probs=74.6
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCCee--------eecCCCHHHHHHHHHh---cCCCCCeEEEE-eccccCCCccCC
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKNSVEA---DGRKRPAVSMI-DKDHISTAELEE 500 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~~~--------~~~~~~~~~~l~~F~~---~g~~~~l~~lv-d~~s~rGlDip~ 500 (573)
++-+++|++|-.--..+.......|+-.. .-..+..+++++.|.. .|+-.++.++| .-.| .||++.+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlS-EGINF~D 707 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLS-EGINFSD 707 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEeccccc-ccccccc
Confidence 36788899988877777777766554321 1111234567777743 34544555533 2222 4999986
Q ss_pred --CCEEEeCCCCCC----HH-------------------H---------HHHHHhccccCCCcceEEEEeccccHHHHHH
Q 008235 501 --YEVVIVPDFIIS----MK-------------------N---------YVEILTSMARHTVSGILHSFFTKDDAAHAGQ 546 (573)
Q Consensus 501 --v~~VI~~d~P~s----~~-------------------~---------YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~ 546 (573)
.+.||..++|.. ++ . --|-+|||=|+-+.=.+|.+++.. +.+.
T Consensus 708 ~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~R---Y~~p 784 (821)
T KOG1133|consen 708 DLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKR---YARP 784 (821)
T ss_pred ccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhh---hcCc
Confidence 678888888742 11 1 127889999988776677777542 2222
Q ss_pred HHHHHHHcCCCCCHHHHHhh
Q 008235 547 MIEILEQCGQVVPDALRDLC 566 (573)
Q Consensus 547 l~~~l~~~~~~vp~~l~~~~ 566 (573)
..+ .+|.|+....
T Consensus 785 ~~R-------KLp~WI~~~v 797 (821)
T KOG1133|consen 785 LSR-------KLPKWIRKRV 797 (821)
T ss_pred hhh-------hccHHHHhHh
Confidence 222 5788886543
No 270
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.69 E-value=1 Score=44.85 Aligned_cols=32 Identities=9% Similarity=-0.184 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHh----cCC-cEEEEeCCCchhHHHHH
Q 008235 203 VNSWGIEFWKCYS----SAK-DILETSGSSSTIVQIAW 235 (573)
Q Consensus 203 ~t~iQ~~aip~il----~g~-dvl~~A~TG~SGKTlaf 235 (573)
+++.+.+++..+. .+. -+++..|.| +|||...
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G-~GKTtl~ 60 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVG-AGKTTLI 60 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCC-CCHHHHH
Confidence 3666666665543 233 578899999 9999653
No 271
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.65 E-value=0.29 Score=55.78 Aligned_cols=68 Identities=10% Similarity=-0.005 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
++|-|.+++.. .+.+++|.|+.| ||||.+.+- -+.++..... .....+|+|+.|+.-|.++.+.+..+
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~G-SGKT~~L~~-ri~~ll~~~~-----~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAG-SGKTRVITN-KIAYLIQNCG-----YKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCC-CCHHHHHHH-HHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 48889998754 357899999999 999987443 3444443210 12457999999999999999888764
No 272
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.64 E-value=0.42 Score=57.35 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=67.4
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.+++|++|+++-+..+++.+..+- .++++.+++|+++..... ..+.++..+|||||. .+ ...+++.+++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~-p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Ii-erGIDIP~v~ 881 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----II-ETGIDIPTAN 881 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC-CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hh-hcccccccCC
Confidence 5689999999998888877777652 167888999998865433 445667899999993 33 3458899999
Q ss_pred EEEEeCcccccCcchHHHHHHhc
Q 008235 333 LLVVDRLDSLSKGDTLSLIRQSI 355 (573)
Q Consensus 333 ~lViDEad~ll~~~~l~~Il~~l 355 (573)
+||++.||++. ..++-++..+.
T Consensus 882 ~VIi~~ad~fg-laq~~Qr~GRv 903 (1147)
T PRK10689 882 TIIIERADHFG-LAQLHQLRGRV 903 (1147)
T ss_pred EEEEecCCCCC-HHHHHHHhhcc
Confidence 99999998653 44444444444
No 273
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.62 E-value=0.45 Score=47.57 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=25.2
Q ss_pred HhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc
Q 008235 214 YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS 264 (573)
Q Consensus 214 il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P 264 (573)
+..|.-+++.+++| +|||.. ++-++..+... .+..++|++-
T Consensus 27 ~~~g~~~~i~g~~G-~GKT~l-~~~~~~~~~~~--------~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTG-VGKTTF-LREYALDLITQ--------HGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCC-CCHHHH-HHHHHHHHHHh--------cCceEEEEEc
Confidence 33567788889999 999953 33333333221 2556777763
No 274
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.60 E-value=1.2 Score=48.03 Aligned_cols=46 Identities=15% Similarity=0.111 Sum_probs=27.8
Q ss_pred CccEEEEeCcccccC----cchHHHHHHhcC-CCCcEEEEeccCCccHHHH
Q 008235 330 GVSLLVVDRLDSLSK----GDTLSLIRQSIS-GKPHTVVFNDCLTYTSVPA 375 (573)
Q Consensus 330 ~l~~lViDEad~ll~----~~~l~~Il~~l~-~~~q~l~~SAT~~~~~~~~ 375 (573)
+.++|+|||+|.+.+ ...+..++..+. .+.|+++.|..-|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 467999999998876 234555555543 3456555554444444333
No 275
>PF13871 Helicase_C_4: Helicase_C-like
Probab=92.60 E-value=0.47 Score=47.35 Aligned_cols=82 Identities=20% Similarity=0.202 Sum_probs=59.1
Q ss_pred HHHHHHhcCCCCCeEEEEeccccCCCccCC--------CCEEEeCCCCCCHHHHHHHHhccccCCCc-ceEEEEec---c
Q 008235 471 IKNSVEADGRKRPAVSMIDKDHISTAELEE--------YEVVIVPDFIISMKNYVEILTSMARHTVS-GILHSFFT---K 538 (573)
Q Consensus 471 ~l~~F~~~g~~~~l~~lvd~~s~rGlDip~--------v~~VI~~d~P~s~~~YiqR~GR~gR~g~~-G~~i~~~~---~ 538 (573)
..+.| .+|+..+++. .+..+ .||.+.. -++-|.+.+|.+.+..+|..||+-|.|+. .-.+.++. +
T Consensus 53 e~~~F-~~g~k~v~ii-s~Ags-tGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 53 EKQAF-MDGEKDVAII-SDAGS-TGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHH-hCCCceEEEE-ecccc-cccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 45789 8998777644 35553 5886653 23557889999999999999999999973 44455444 3
Q ss_pred ccHHHHHHHHHHHHHcC
Q 008235 539 DDAAHAGQMIEILEQCG 555 (573)
Q Consensus 539 ~d~~~~~~l~~~l~~~~ 555 (573)
.|.+++..+.+-|...+
T Consensus 130 gE~Rfas~va~rL~sLg 146 (278)
T PF13871_consen 130 GERRFASTVARRLESLG 146 (278)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 48888888888776644
No 276
>PRK12377 putative replication protein; Provisional
Probab=92.58 E-value=1.5 Score=43.30 Aligned_cols=98 Identities=15% Similarity=0.222 Sum_probs=54.2
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHH
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~ 297 (573)
..+++..|+| +|||.. +..+...+.. .+..+ +.++..+|..++...+.. +.
T Consensus 102 ~~l~l~G~~G-tGKThL-a~AIa~~l~~---------~g~~v-~~i~~~~l~~~l~~~~~~-------------~~---- 152 (248)
T PRK12377 102 TNFVFSGKPG-TGKNHL-AAAIGNRLLA---------KGRSV-IVVTVPDVMSRLHESYDN-------------GQ---- 152 (248)
T ss_pred CeEEEECCCC-CCHHHH-HHHHHHHHHH---------cCCCe-EEEEHHHHHHHHHHHHhc-------------cc----
Confidence 6789999999 999954 2333444432 23344 444556777666543210 00
Q ss_pred HHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC----cchHHHHHHhcC-CCCcEEEEec
Q 008235 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSIS-GKPHTVVFND 366 (573)
Q Consensus 298 ~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~-~~~q~l~~SA 366 (573)
+-..+++ .+.++++|||||.+.... ...+..|++.-- ....+++.|-
T Consensus 153 ---------------~~~~~l~-------~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 153 ---------------SGEKFLQ-------ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred ---------------hHHHHHH-------HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0011111 146789999999965433 445555555433 3456666554
No 277
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.48 E-value=0.68 Score=49.63 Aligned_cols=73 Identities=10% Similarity=0.168 Sum_probs=55.4
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
..++||.|+|+.-|..+++.+... |+.+..++|+.+..+.. ..++++.++|||||- .+. ..+++.+++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~---g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~-rGiDip~v~ 325 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD---GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAA-RGLHIPAVT 325 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC---CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhh-cCCCccccC
Confidence 457999999999998888877654 88999999998765543 445667899999993 333 447788888
Q ss_pred EEEEe
Q 008235 333 LLVVD 337 (573)
Q Consensus 333 ~lViD 337 (573)
+||.-
T Consensus 326 ~VI~~ 330 (423)
T PRK04837 326 HVFNY 330 (423)
T ss_pred EEEEe
Confidence 77643
No 278
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.46 E-value=0.51 Score=46.23 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=30.7
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc---ccHHHHHHH
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKV 272 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~---PtreLa~Qi 272 (573)
.|.=+++.+++| +||| +|++-++..+... .+..+++++ |..+++..+
T Consensus 12 ~G~l~lI~G~~G-~GKT-~~~~~~~~~~~~~--------~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 12 PGDLIIIAARPS-MGKT-AFALNIAENIAKK--------QGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCeEEEEEeCCC-CCHH-HHHHHHHHHHHHh--------CCCceEEEeCCCCHHHHHHHH
Confidence 456678889999 9999 4555555544433 256788887 445555544
No 279
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.44 E-value=0.73 Score=49.77 Aligned_cols=106 Identities=18% Similarity=0.152 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHH---HHHHHhhcC
Q 008235 229 TIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID---HQITGLRSC 305 (573)
Q Consensus 229 SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~---~~~~~l~~~ 305 (573)
.|++-.-++.+.+.+... -.|.+||.+-+.|-|.|++..+..+ -+|++..++|+.+.. .-...++.+
T Consensus 368 ~gse~~K~lA~rq~v~~g--------~~PP~lIfVQs~eRak~L~~~L~~~--~~i~v~vIh~e~~~~qrde~~~~FR~g 437 (593)
T KOG0344|consen 368 CGSEKGKLLALRQLVASG--------FKPPVLIFVQSKERAKQLFEELEIY--DNINVDVIHGERSQKQRDETMERFRIG 437 (593)
T ss_pred eecchhHHHHHHHHHhcc--------CCCCeEEEEecHHHHHHHHHHhhhc--cCcceeeEecccchhHHHHHHHHHhcc
Confidence 455555455455444432 3677999999999999999988733 388999999986533 335667777
Q ss_pred CCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHH
Q 008235 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351 (573)
Q Consensus 306 ~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~I 351 (573)
...++||| ++|.++ ++|.++.+||-+..-.-. ...+.+|
T Consensus 438 ~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~s~-~syihrI 476 (593)
T KOG0344|consen 438 KIWVLICT-----DLLARG-IDFKGVNLVINYDFPQSD-LSYIHRI 476 (593)
T ss_pred CeeEEEeh-----hhhhcc-ccccCcceEEecCCCchh-HHHHHHh
Confidence 89999999 567766 899999999996653211 4444444
No 280
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.40 E-value=0.75 Score=49.01 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=24.6
Q ss_pred CccEEEEeCcccccC----cchHHHHHHhc-CCCCcEEEEeccCCc
Q 008235 330 GVSLLVVDRLDSLSK----GDTLSLIRQSI-SGKPHTVVFNDCLTY 370 (573)
Q Consensus 330 ~l~~lViDEad~ll~----~~~l~~Il~~l-~~~~q~l~~SAT~~~ 370 (573)
++++|||||+|.+.. ...+..++..+ ..+.++++ +++.++
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iii-ts~~~p 243 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVL-TSDRPP 243 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEE-ecCCCH
Confidence 367999999998766 23455555544 34456555 555443
No 281
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.36 E-value=0.34 Score=59.03 Aligned_cols=66 Identities=8% Similarity=-0.000 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
.|+-|.++|- ..|++++|.|.-| ||||.+..--++..+.... .--++|+|+=|+.-|..+.+.+..
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AG-sGKT~~lv~r~~~~~~~~~-------~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAG-SGKTAVLVERIIKKILRGV-------DIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCC-CcHHHHHHHHHHHHHhcCC-------CHhhEEEEeccHHHHHHHHHHHHH
Confidence 4899999997 4689999999999 9999886555555554220 223699999999999988877766
No 282
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.34 E-value=0.65 Score=51.54 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=30.3
Q ss_pred CCCccEEEEeCcccccC----cchHHHHHHhcCC-CCcEEEEeccCCccH
Q 008235 328 VSGVSLLVVDRLDSLSK----GDTLSLIRQSISG-KPHTVVFNDCLTYTS 372 (573)
Q Consensus 328 l~~l~~lViDEad~ll~----~~~l~~Il~~l~~-~~q~l~~SAT~~~~~ 372 (573)
+.++++||||++|.+.. ...+..+++.+.. +.++|+.|-..|..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 34578999999998866 4556667766643 567777655555443
No 283
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.20 E-value=0.74 Score=47.32 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=27.3
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEec
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFND 366 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SA 366 (573)
...+.+|||+||.|-. ...+.++++.-|++.-+++.|.
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 4678999999999986 6667777777555555555443
No 284
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.19 E-value=3.2 Score=44.33 Aligned_cols=16 Identities=6% Similarity=-0.187 Sum_probs=12.4
Q ss_pred cEEEEeCCCchhHHHHH
Q 008235 219 DILETSGSSSTIVQIAW 235 (573)
Q Consensus 219 dvl~~A~TG~SGKTlaf 235 (573)
-++++.++| +|||.+.
T Consensus 102 vi~lvG~~G-vGKTTta 117 (429)
T TIGR01425 102 VIMFVGLQG-SGKTTTC 117 (429)
T ss_pred EEEEECCCC-CCHHHHH
Confidence 456778999 9998653
No 285
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.11 E-value=1.3 Score=43.93 Aligned_cols=50 Identities=8% Similarity=0.168 Sum_probs=33.3
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHh
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~ 277 (573)
++.++++..|+| +|||.... .+...+. . .|..+ +++++-+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G-~GKThLa~-Ai~~~l~-~--------~g~sv-~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPG-VGKTHLAI-AIGNELL-K--------AGISV-LFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCC-CcHHHHHH-HHHHHHH-H--------cCCeE-EEEEHHHHHHHHHHHHh
Confidence 678999999999 99996543 3333343 2 24444 45577788877766543
No 286
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=92.08 E-value=5 Score=44.99 Aligned_cols=152 Identities=9% Similarity=-0.008 Sum_probs=80.6
Q ss_pred CCCCCCHHHHHHHHHHh---cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHH
Q 008235 199 NPLFVNSWGIEFWKCYS---SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (573)
Q Consensus 199 ~~~~~t~iQ~~aip~il---~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~ 275 (573)
+|.-++|.=.+-|..++ ..+-.++.+|-| .|||.+..+-++ .+... .+.+++|.+|...-+.++++.
T Consensus 166 np~~~~~~~~~~id~~~~~fkq~~tV~taPRq-rGKS~iVgi~l~-~La~f--------~Gi~IlvTAH~~~ts~evF~r 235 (752)
T PHA03333 166 NPEAPSPRTLREIDRIFDEYGKCYTAATVPRR-CGKTTIMAIILA-AMISF--------LEIDIVVQAQRKTMCLTLYNR 235 (752)
T ss_pred CcCCCChhhHHHHHHHHHHHhhcceEEEeccC-CCcHHHHHHHHH-HHHHh--------cCCeEEEECCChhhHHHHHHH
Confidence 44444666555555544 447778889999 999977654444 33322 267899999988888888876
Q ss_pred Hhhh-hcCC--------cEEEEeCCCCCH-HHHH-HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC
Q 008235 276 CKPL-KAFG--------IHTVSLHPGAAI-DHQI-TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (573)
Q Consensus 276 ~~~l-~~~~--------i~~~~~~gg~~~-~~~~-~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~ 344 (573)
+..+ ...+ -.+..+.||... .-.. ...+-++..|...+-. .+...-..+++||||||.-+-
T Consensus 236 v~~~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~- 307 (752)
T PHA03333 236 VETVVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVN- 307 (752)
T ss_pred HHHHHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCC-
Confidence 6654 2111 112222232210 0000 0000000122222211 122333457899999998665
Q ss_pred cchHHHHHHhcC-CCCcEEEEeccC
Q 008235 345 GDTLSLIRQSIS-GKPHTVVFNDCL 368 (573)
Q Consensus 345 ~~~l~~Il~~l~-~~~q~l~~SAT~ 368 (573)
.+.+..|+-.+. .+..++++|.+-
T Consensus 308 ~~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 308 PGALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHHHHHccCCCceEEEeCCC
Confidence 455555555553 344555555554
No 287
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=91.97 E-value=1.4 Score=50.07 Aligned_cols=40 Identities=5% Similarity=0.068 Sum_probs=26.0
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccCC
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLT 369 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~~ 369 (573)
.+.+++||||+|.|.. ...|.++++.-+....+|+ .+|-+
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FIL-aTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFIL-ATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEE-EECCh
Confidence 4578999999998875 5566666666554444444 44433
No 288
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=91.93 E-value=0.88 Score=48.93 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=56.6
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
..++||.|+|++-|..++..+... ++.+..++|+.+..+.. ..++.+.++||||| +.+. ..+++.++.
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~~-~GiDip~v~ 315 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKA---GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVAA-RGIDIDDVS 315 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhC---CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----cccc-cCccCCCCC
Confidence 568999999999999988887764 88999999998865543 45566789999999 3333 446888999
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||.
T Consensus 316 ~VI~ 319 (434)
T PRK11192 316 HVIN 319 (434)
T ss_pred EEEE
Confidence 8874
No 289
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.82 E-value=0.73 Score=49.83 Aligned_cols=72 Identities=18% Similarity=0.322 Sum_probs=54.7
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHH---HhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQIT---GLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~---~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
.+.++||.|-|+.-|.++...++.. ++.+.+++|+.+..+... .++++.+.|||||- +..+.+++.+|
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~---~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------VAaRGLDi~dV 410 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK---GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------VAARGLDVPDV 410 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc---CcceeeecccccHHHHHHHHHhcccCCcceEEEcc------cccccCCCccc
Confidence 4679999999999999888877765 689999999988665443 34567899999993 23345677777
Q ss_pred cEEE
Q 008235 332 SLLV 335 (573)
Q Consensus 332 ~~lV 335 (573)
++||
T Consensus 411 ~lVI 414 (519)
T KOG0331|consen 411 DLVI 414 (519)
T ss_pred cEEE
Confidence 6655
No 290
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.72 E-value=7.1 Score=41.61 Aligned_cols=129 Identities=9% Similarity=0.100 Sum_probs=61.1
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCC
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAA 294 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~ 294 (573)
.|.-+.++.||| +|||.....-+-..+.... ....++|.+.+.-.+. .+++..++. +|+.+..+.
T Consensus 190 ~g~vi~lvGpnG-~GKTTtlakLA~~~~~~~~-------~~~v~~i~~d~~riga--lEQL~~~a~ilGvp~~~v~---- 255 (420)
T PRK14721 190 QGGVYALIGPTG-VGKTTTTAKLAARAVIRHG-------ADKVALLTTDSYRIGG--HEQLRIYGKLLGVSVRSIK---- 255 (420)
T ss_pred CCcEEEEECCCC-CCHHHHHHHHHHHHHHhcC-------CCeEEEEecCCcchhH--HHHHHHHHHHcCCceecCC----
Confidence 355577789999 9999765432222222110 1234566666633221 122222211 244433322
Q ss_pred HHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCc
Q 008235 295 IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTY 370 (573)
Q Consensus 295 ~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~ 370 (573)
++..+...+. .+.+.+.++||.+-+... ..++..+.....+..-++++|||...
T Consensus 256 ------------------~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~ 313 (420)
T PRK14721 256 ------------------DIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG 313 (420)
T ss_pred ------------------CHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH
Confidence 3333322222 144556777777643322 23333332222333456789999754
Q ss_pred c-HHHHHHHHh
Q 008235 371 T-SVPAVQNLL 380 (573)
Q Consensus 371 ~-~~~~~~~~l 380 (573)
. +.+.+..|-
T Consensus 314 ~~~~~~~~~f~ 324 (420)
T PRK14721 314 DTLDEVISAYQ 324 (420)
T ss_pred HHHHHHHHHhc
Confidence 4 555555553
No 291
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.61 E-value=1.1 Score=46.42 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHhc--C---CcEEEEeCCCchhHHHHHHHHHHHHHHh
Q 008235 204 NSWGIEFWKCYSS--A---KDILETSGSSSTIVQIAWIVATAADSIA 245 (573)
Q Consensus 204 t~iQ~~aip~il~--g---~dvl~~A~TG~SGKTlaf~lp~l~~l~~ 245 (573)
.|||...|..+.+ | .-+++.+|.| .||+... .-+...++.
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G-~GK~~lA-~~~A~~LlC 47 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAG-IGKLDFA-QHLAQGLLC 47 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCC-CCHHHHH-HHHHHHHcC
Confidence 6899998888764 3 3678899999 9999653 334444544
No 292
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.46 E-value=1.8 Score=39.72 Aligned_cols=40 Identities=10% Similarity=0.195 Sum_probs=29.3
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccC
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCL 368 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~ 368 (573)
...+.+||||||.|-. ...+.++++.-+.+..+++.+...
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 5689999999999987 777778887767666666665443
No 293
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.45 E-value=0.67 Score=43.20 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=30.6
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 220 ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 220 vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
+++.+|+| +|||... +-++..... .|..++|++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G-~GKT~l~-~~~~~~~~~---------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPG-TGKTTFA-LQFLYAGLA---------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCC-CCHHHHH-HHHHHHHHH---------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 67889999 9999643 333322222 3566787754 45666777766655
No 294
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.44 E-value=3.2 Score=48.89 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=102.4
Q ss_pred HHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHH--hchhccCC---------------------CCCCcEEEEEc
Q 008235 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSI--ARKEKEGF---------------------SFTGPFLLFLV 263 (573)
Q Consensus 207 Q~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~--~~~~~~~~---------------------~~~~~~~Lil~ 263 (573)
|.+.+..+...-|||-.+.|= -=.||-..+.-+..+. ..++..+. -.+|.++.||.
T Consensus 732 ~KEkLK~Lr~~VDvLTLSATP-IPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~ 810 (1139)
T COG1197 732 HKEKLKELRANVDVLTLSATP-IPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVH 810 (1139)
T ss_pred HHHHHHHHhccCcEEEeeCCC-CcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEe
Confidence 667777777777887777777 7777765544443331 11111110 12588999999
Q ss_pred ccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHH---hhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcc
Q 008235 264 SSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITG---LRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (573)
Q Consensus 264 PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~---l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad 340 (573)
|..+=..++...++.|-+ ..+++..+|-+...+.... ..++.+||||||. +-...+++.+...|||+-||
T Consensus 811 NrV~~Ie~~~~~L~~LVP-EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT------IIEtGIDIPnANTiIIe~AD 883 (1139)
T COG1197 811 NRVESIEKKAERLRELVP-EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT------IIETGIDIPNANTIIIERAD 883 (1139)
T ss_pred cchhhHHHHHHHHHHhCC-ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee------eeecCcCCCCCceEEEeccc
Confidence 999988888888888733 6788999999886655433 3456899999994 44566899999999999999
Q ss_pred cccCcchHHHHHHhcCC
Q 008235 341 SLSKGDTLSLIRQSISG 357 (573)
Q Consensus 341 ~ll~~~~l~~Il~~l~~ 357 (573)
+|. ..++.++..+...
T Consensus 884 ~fG-LsQLyQLRGRVGR 899 (1139)
T COG1197 884 KFG-LAQLYQLRGRVGR 899 (1139)
T ss_pred ccc-HHHHHHhccccCC
Confidence 887 8888888877753
No 295
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=91.38 E-value=1.1 Score=48.62 Aligned_cols=72 Identities=15% Similarity=0.291 Sum_probs=54.8
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
..++||.|+|++-|..+++.+... ++.+..++|+.+..+. ...++++..+||||| +.+. ..+++.+++
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~---g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~-rGiDip~v~ 315 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD---GIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAA-RGLDIEELP 315 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC---CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHh-cCCCcccCC
Confidence 457999999999998888877654 8899999999886544 345566678999999 3344 347788888
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||.
T Consensus 316 ~VI~ 319 (456)
T PRK10590 316 HVVN 319 (456)
T ss_pred EEEE
Confidence 7763
No 296
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=91.37 E-value=0.75 Score=49.09 Aligned_cols=71 Identities=24% Similarity=0.455 Sum_probs=54.9
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
.|.+||.+.|..=|.-+.+.+.++ |++++.++||.+.+... ..++.+..+|+|||- +.-..+++.+|.
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~---g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------vAgRGIDIpnVS 587 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA---GYKVTTLHGGKSQEQRENALADFREGTGDILVATD------VAGRGIDIPNVS 587 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc---cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------ccccCCCCCccc
Confidence 678999999998888777777766 89999999998865443 445565789999993 233457888888
Q ss_pred EEE
Q 008235 333 LLV 335 (573)
Q Consensus 333 ~lV 335 (573)
+||
T Consensus 588 lVi 590 (673)
T KOG0333|consen 588 LVI 590 (673)
T ss_pred eee
Confidence 776
No 297
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.37 E-value=3.4 Score=44.25 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=23.5
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~ 263 (573)
|.=+++.|++| +||| +|++-+...+... .+..++|++
T Consensus 194 g~liviag~pg-~GKT-~~al~ia~~~a~~--------~g~~v~~fS 230 (421)
T TIGR03600 194 GDLIVIGARPS-MGKT-TLALNIAENVALR--------EGKPVLFFS 230 (421)
T ss_pred CceEEEEeCCC-CCHH-HHHHHHHHHHHHh--------CCCcEEEEE
Confidence 34456678999 9999 5566665444321 244577776
No 298
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.34 E-value=4 Score=37.59 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=27.6
Q ss_pred CccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHh
Q 008235 330 GVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL 380 (573)
Q Consensus 330 ~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l 380 (573)
+.+++|+|....+.. ...+..+.....+..-+++++|+.+....+.+..+.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHH
Confidence 456788888776532 333333333333455566677765555445554443
No 299
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.15 E-value=11 Score=38.69 Aligned_cols=52 Identities=15% Similarity=0.309 Sum_probs=30.3
Q ss_pred CCccEEEEeCcccccC----cchHHHHHHhc------CCCCcEEEEeccCCccHHHHHHHHh
Q 008235 329 SGVSLLVVDRLDSLSK----GDTLSLIRQSI------SGKPHTVVFNDCLTYTSVPAVQNLL 380 (573)
Q Consensus 329 ~~l~~lViDEad~ll~----~~~l~~Il~~l------~~~~q~l~~SAT~~~~~~~~~~~~l 380 (573)
.+.++||||=+-++.. .+++..+...+ .+..-+++++||.......-+..|.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 4467777777776653 34555555433 2333467889997665444455554
No 300
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=91.13 E-value=1.6 Score=45.83 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=23.5
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCC-CCcEEEEecc
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISG-KPHTVVFNDC 367 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~-~~q~l~~SAT 367 (573)
....-.||+||+|.|++ .+.+-.|+..... ..++.++.-+
T Consensus 121 ~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~ 163 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVS 163 (366)
T ss_pred cCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEe
Confidence 34456899999999998 3444455444332 2344444333
No 301
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=91.12 E-value=3.2 Score=39.01 Aligned_cols=101 Identities=11% Similarity=0.080 Sum_probs=58.1
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHH
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~ 297 (573)
+=.++++|-. ||||.. +|.++..... .+.++++..|-.. . .++...+.-.-|..
T Consensus 5 ~l~~i~gpM~-SGKT~e----Ll~r~~~~~~------~g~~v~vfkp~iD------~------R~~~~~V~Sr~G~~--- 58 (201)
T COG1435 5 WLEFIYGPMF-SGKTEE----LLRRARRYKE------AGMKVLVFKPAID------T------RYGVGKVSSRIGLS--- 58 (201)
T ss_pred EEEEEEccCc-CcchHH----HHHHHHHHHH------cCCeEEEEecccc------c------ccccceeeeccCCc---
Confidence 3357789999 999985 3333333221 3678888888311 0 11222222222222
Q ss_pred HHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHh
Q 008235 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQS 354 (573)
Q Consensus 298 ~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~ 354 (573)
-+-++|-.+..+.+.+......+. +++|.||||+ .++ ..++..+...
T Consensus 59 --------~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQ-F~~~~~v~~l~~lad~ 108 (201)
T COG1435 59 --------SEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQ-FFDEELVYVLNELADR 108 (201)
T ss_pred --------ccceecCChHHHHHHHHhcccCCC-cCEEEEehhH-hCCHHHHHHHHHHHhh
Confidence 245777788888888876443333 8899999998 554 3344444443
No 302
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.79 E-value=0.85 Score=45.33 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=58.4
Q ss_pred cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc---cHHHHHHHHHHHhhhhcCCcEEEEeCCCCCH
Q 008235 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS---SQEKAAKVRSVCKPLKAFGIHTVSLHPGAAI 295 (573)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P---treLa~Qi~~~~~~l~~~~i~~~~~~gg~~~ 295 (573)
=+++.|+|| .||| +|++-+..++... .+..++|++. ..+++..+....... ....+..|.-.
T Consensus 21 L~vi~a~pg-~GKT-~~~l~ia~~~a~~--------~~~~vly~SlEm~~~~l~~R~la~~s~v-----~~~~i~~g~l~ 85 (259)
T PF03796_consen 21 LTVIAARPG-VGKT-AFALQIALNAALN--------GGYPVLYFSLEMSEEELAARLLARLSGV-----PYNKIRSGDLS 85 (259)
T ss_dssp EEEEEESTT-SSHH-HHHHHHHHHHHHT--------TSSEEEEEESSS-HHHHHHHHHHHHHTS-----THHHHHCCGCH
T ss_pred EEEEEeccc-CCch-HHHHHHHHHHHHh--------cCCeEEEEcCCCCHHHHHHHHHHHhhcc-----hhhhhhccccC
Confidence 356668999 9999 5666666666543 2467888885 344544443333222 11112223222
Q ss_pred HHHHH-------HhhcCCCcEEEeC----HHHHHHHHHcCCCCCCCccEEEEeCcccccC
Q 008235 296 DHQIT-------GLRSCEPEFLVST----PERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (573)
Q Consensus 296 ~~~~~-------~l~~~~~~IlV~T----P~rL~~~l~~~~~~l~~l~~lViDEad~ll~ 344 (573)
..++. .+.. ..-++..+ ++.+.+.+..-......+.+||||=.|.|-.
T Consensus 86 ~~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 86 DEEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred HHHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 22222 2333 22233343 4455555543222237789999999997754
No 303
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.76 E-value=2.6 Score=48.09 Aligned_cols=20 Identities=0% Similarity=-0.266 Sum_probs=15.1
Q ss_pred CCcEEEEeCCCchhHHHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAWIV 237 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~l 237 (573)
|+=+.++.||| +|||.+...
T Consensus 185 g~Vi~lVGpnG-vGKTTTiaK 204 (767)
T PRK14723 185 GGVLALVGPTG-VGKTTTTAK 204 (767)
T ss_pred CeEEEEECCCC-CcHHHHHHH
Confidence 44467789999 999987543
No 304
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=90.73 E-value=4.8 Score=40.38 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=29.0
Q ss_pred CccEEEEeCcccccC----cchHHHHHHhcC------CCCcEEEEeccCCccHHHHHHHHh
Q 008235 330 GVSLLVVDRLDSLSK----GDTLSLIRQSIS------GKPHTVVFNDCLTYTSVPAVQNLL 380 (573)
Q Consensus 330 ~l~~lViDEad~ll~----~~~l~~Il~~l~------~~~q~l~~SAT~~~~~~~~~~~~l 380 (573)
+.++++||=+-++.. ..++..+.+.+. ++--+++++||...+....+..|.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 345566665555432 445556655554 455577888887655444454544
No 305
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.71 E-value=2.9 Score=43.66 Aligned_cols=25 Identities=4% Similarity=-0.105 Sum_probs=18.2
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHH
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSI 244 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~ 244 (573)
.++++..|+| +|||.+ +--++..+.
T Consensus 41 ~~i~I~G~~G-tGKT~l-~~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTG-TGKTAV-TKYVMKELE 65 (365)
T ss_pred CcEEEECCCC-CCHHHH-HHHHHHHHH
Confidence 6799999999 999965 334444443
No 306
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.71 E-value=24 Score=37.60 Aligned_cols=51 Identities=10% Similarity=0.259 Sum_probs=31.1
Q ss_pred CCccEEEEeCcccccC----cchHHHHHHhcC---CCCcEEEEeccCCc-cHHHHHHHH
Q 008235 329 SGVSLLVVDRLDSLSK----GDTLSLIRQSIS---GKPHTVVFNDCLTY-TSVPAVQNL 379 (573)
Q Consensus 329 ~~l~~lViDEad~ll~----~~~l~~Il~~l~---~~~q~l~~SAT~~~-~~~~~~~~~ 379 (573)
.+.++||||=+-++.. ...+..++.... +.--++++|||... .+.+.+..|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 4567889997776643 444455554442 22346778999877 455555555
No 307
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=90.61 E-value=1.6 Score=43.49 Aligned_cols=17 Identities=6% Similarity=-0.122 Sum_probs=14.7
Q ss_pred CcEEEEeCCCchhHHHHH
Q 008235 218 KDILETSGSSSTIVQIAW 235 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (573)
.++++..|+| +|||...
T Consensus 43 ~~vll~GppG-tGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPG-TGKTTVA 59 (261)
T ss_pred ceEEEEcCCC-CCHHHHH
Confidence 5789999999 9999653
No 308
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.60 E-value=1.3 Score=48.34 Aligned_cols=73 Identities=15% Similarity=0.293 Sum_probs=56.1
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
..++||.|++++-|..+++.+... ++.+..++|+.+..+. ...++++...||||| +.+. ..+++.+++
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT-----~~l~-~GIDi~~v~ 405 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKD---GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT-----DVAG-RGIHIDGIS 405 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc---CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEc-----cccc-cCCcccCCC
Confidence 458999999999998888777554 7888899999886654 345566678999999 3333 447888899
Q ss_pred EEEEe
Q 008235 333 LLVVD 337 (573)
Q Consensus 333 ~lViD 337 (573)
++|.-
T Consensus 406 ~VI~~ 410 (475)
T PRK01297 406 HVINF 410 (475)
T ss_pred EEEEe
Confidence 88864
No 309
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=90.49 E-value=2.8 Score=45.48 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=83.8
Q ss_pred CCCCCHHHHHHHHHHhc------C----CcEEEEeCCCchhHHHHHH-HHHHHHHHhchhccCCCCCCcEEEEEcccHHH
Q 008235 200 PLFVNSWGIEFWKCYSS------A----KDILETSGSSSTIVQIAWI-VATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268 (573)
Q Consensus 200 ~~~~t~iQ~~aip~il~------g----~dvl~~A~TG~SGKTlaf~-lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreL 268 (573)
|+.+-|||.-.+-+++- | +..++.-|-| -|||-... |.+...+.... .+-...|++|+.+-
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~Rk-ngKt~l~A~i~~~~~l~~~~-------~~~~~~i~A~s~~q 130 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRK-NGKSTLAAGIMMTALLLNWR-------SGAGIYILAPSVEQ 130 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecC-CchHHHHHHHHHHHHHhhhh-------cCCcEEEEeccHHH
Confidence 45568899999988871 2 3567777888 89985433 33333333321 46789999999999
Q ss_pred HHHHHHHHhhh-hcC-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHc--CCCCCCCccEEEEeCcccccC
Q 008235 269 AAKVRSVCKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL--KAIDVSGVSLLVVDRLDSLSK 344 (573)
Q Consensus 269 a~Qi~~~~~~l-~~~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~--~~~~l~~l~~lViDEad~ll~ 344 (573)
+.+....++.+ ... ++...+- +......|...--...+..+.. +..+-.+..+.|+||.|...+
T Consensus 131 a~~~F~~ar~mv~~~~~l~~~~~------------~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~ 198 (546)
T COG4626 131 AANSFNPARDMVKRDDDLRDLCN------------VQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGK 198 (546)
T ss_pred HHHhhHHHHHHHHhCcchhhhhc------------cccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcC
Confidence 99988888775 111 1111110 0000011111111111122222 224445678999999997776
Q ss_pred c-chHHHHHHhc--CCCCcEEEEec
Q 008235 345 G-DTLSLIRQSI--SGKPHTVVFND 366 (573)
Q Consensus 345 ~-~~l~~Il~~l--~~~~q~l~~SA 366 (573)
. ..+..+..-+ .++.+++..|.
T Consensus 199 ~~~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 199 QEDMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHHHHHhhhccCcCceEEEEec
Confidence 3 5666666555 35666766655
No 310
>PRK09183 transposase/IS protein; Provisional
Probab=90.47 E-value=3 Score=41.48 Aligned_cols=21 Identities=10% Similarity=-0.119 Sum_probs=17.3
Q ss_pred HhcCCcEEEEeCCCchhHHHHH
Q 008235 214 YSSAKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 214 il~g~dvl~~A~TG~SGKTlaf 235 (573)
+-.|.++++..|+| +|||...
T Consensus 99 i~~~~~v~l~Gp~G-tGKThLa 119 (259)
T PRK09183 99 IERNENIVLLGPSG-VGKTHLA 119 (259)
T ss_pred hhcCCeEEEEeCCC-CCHHHHH
Confidence 44678999999999 9999543
No 311
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=90.39 E-value=2.1 Score=47.67 Aligned_cols=137 Identities=10% Similarity=0.033 Sum_probs=83.7
Q ss_pred HhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hc-C-CcEEEEeC
Q 008235 214 YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA-F-GIHTVSLH 290 (573)
Q Consensus 214 il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~-~-~i~~~~~~ 290 (573)
....+-.++..|-- .|||.... +++..+...- .|..+++.+|.+.-+..+++.+..+ .. + +-.+..+.
T Consensus 251 ~fkqk~tVflVPRR-~GKTwivv-~iI~~ll~s~-------~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vk 321 (738)
T PHA03368 251 HFRQRATVFLVPRR-HGKTWFLV-PLIALALATF-------RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVK 321 (738)
T ss_pred HhhccceEEEeccc-CCchhhHH-HHHHHHHHhC-------CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeec
Confidence 34457778888888 99998654 6666555431 4789999999999999999888775 21 1 11111122
Q ss_pred CCCCHHHHHHHhhcCC-CcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhc-CCCCcEEEEeccC
Q 008235 291 PGAAIDHQITGLRSCE-PEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI-SGKPHTVVFNDCL 368 (573)
Q Consensus 291 gg~~~~~~~~~l~~~~-~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l-~~~~q~l~~SAT~ 368 (573)
| ... .-.+.+++ ..|.++|- -..+...=..+++||||||+-+- .+.+..|+-.+ ..+++++++|.|-
T Consensus 322 G-e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk-~~al~~ilp~l~~~n~k~I~ISS~N 390 (738)
T PHA03368 322 G-ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIR-PDAVQTIMGFLNQTNCKIIFVSSTN 390 (738)
T ss_pred C-cEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCC-HHHHHHHHHHHhccCccEEEEecCC
Confidence 2 111 00112211 24555531 11223444578999999999665 45555555444 3588999999885
Q ss_pred Cc
Q 008235 369 TY 370 (573)
Q Consensus 369 ~~ 370 (573)
+.
T Consensus 391 s~ 392 (738)
T PHA03368 391 TG 392 (738)
T ss_pred CC
Confidence 43
No 312
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=90.39 E-value=0.72 Score=51.20 Aligned_cols=68 Identities=10% Similarity=0.104 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHH-HHHhh
Q 008235 202 FVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR-SVCKP 278 (573)
Q Consensus 202 ~~t~iQ~~aip~il~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~-~~~~~ 278 (573)
..+|+|.+...++..- +.|+++.++- +|||.+. +-++-+.... ...-+|++.||.++|.... ..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ-~GkT~~~-~n~~g~~i~~--------~P~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQ-VGKTELL-LNWIGYSIDQ--------DPGPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcch-hhHhHHH-HhhceEEEEe--------CCCCEEEEEEcHHHHHHHHHHHHHH
Confidence 4589999988888765 7888899999 9999854 3344333333 2345899999999998776 45544
Q ss_pred h
Q 008235 279 L 279 (573)
Q Consensus 279 l 279 (573)
+
T Consensus 86 m 86 (557)
T PF05876_consen 86 M 86 (557)
T ss_pred H
Confidence 3
No 313
>PRK05973 replicative DNA helicase; Provisional
Probab=90.28 E-value=2.9 Score=40.95 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=33.0
Q ss_pred HHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 212 KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 212 p~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.-+..|.-+++.+++| +|||.. .+-++..... .|..++|++- -+=..|+.+.+..+
T Consensus 59 GGl~~Gsl~LIaG~PG-~GKT~l-alqfa~~~a~---------~Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 59 SQLKPGDLVLLGARPG-HGKTLL-GLELAVEAMK---------SGRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCCCEEEEEeCCC-CCHHHH-HHHHHHHHHh---------cCCeEEEEEE-eCCHHHHHHHHHHc
Confidence 3444566778889999 999954 4433333322 2556777753 22245666666555
No 314
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=90.20 E-value=1.9 Score=44.46 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHhc--C---CcEEEEeCCCchhHHHHHHHHHHHHHH
Q 008235 204 NSWGIEFWKCYSS--A---KDILETSGSSSTIVQIAWIVATAADSI 244 (573)
Q Consensus 204 t~iQ~~aip~il~--g---~dvl~~A~TG~SGKTlaf~lp~l~~l~ 244 (573)
.|||..+|..+.. | .-+++.+|.| .|||... .-+...++
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G-~GK~~la-~~~a~~ll 46 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKG-IGKTAFA-RFAAQALL 46 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCC-CCHHHHH-HHHHHHHc
Confidence 6899999988874 3 3588999999 9999653 33344444
No 315
>PTZ00110 helicase; Provisional
Probab=90.16 E-value=1.8 Score=48.03 Aligned_cols=72 Identities=14% Similarity=0.307 Sum_probs=55.5
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.|+|+.-|..+...+... ++.+.+++|+....+. ...++++...|||||- .+ ...+++.+++
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~~---g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~-~rGIDi~~v~ 447 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRLD---GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VA-SRGLDVKDVK 447 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHHc---CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hh-hcCCCcccCC
Confidence 678999999999999888877643 7888999999876543 3455666789999993 33 3457888888
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||.
T Consensus 448 ~VI~ 451 (545)
T PTZ00110 448 YVIN 451 (545)
T ss_pred EEEE
Confidence 8875
No 316
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.14 E-value=0.56 Score=45.51 Aligned_cols=128 Identities=12% Similarity=0.052 Sum_probs=64.5
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-------C-CcEEE
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-------F-GIHTV 287 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-------~-~i~~~ 287 (573)
.|.-+++.+++| ||||.-.+--+...+... +-.+++++- .+-..++.+.+..+.. . .+.+.
T Consensus 18 ~gs~~li~G~~G-sGKT~l~~q~l~~~~~~~---------ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~ 86 (226)
T PF06745_consen 18 KGSVVLISGPPG-SGKTTLALQFLYNGLKNF---------GEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKII 86 (226)
T ss_dssp TTSEEEEEESTT-SSHHHHHHHHHHHHHHHH---------T--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEE
T ss_pred CCcEEEEEeCCC-CCcHHHHHHHHHHhhhhc---------CCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEE
Confidence 457789999999 999965333333433321 345777773 4445666666666511 0 12222
Q ss_pred EeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-------cchHHHHHHhcCCCCc
Q 008235 288 SLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-------GDTLSLIRQSISGKPH 360 (573)
Q Consensus 288 ~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-------~~~l~~Il~~l~~~~q 360 (573)
-+...... .. -..++.++..+.... .-.+.+.+|||-...+.. ...+..+...+.....
T Consensus 87 d~~~~~~~-----------~~--~~~~~~l~~~i~~~i-~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~ 152 (226)
T PF06745_consen 87 DAFPERIG-----------WS--PNDLEELLSKIREAI-EELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGV 152 (226)
T ss_dssp ESSGGGST------------T--SCCHHHHHHHHHHHH-HHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTE
T ss_pred eccccccc-----------cc--ccCHHHHHHHHHHHH-HhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCC
Confidence 11111000 00 123344443333211 111238999999998833 3345555555555566
Q ss_pred EEEEeccC
Q 008235 361 TVVFNDCL 368 (573)
Q Consensus 361 ~l~~SAT~ 368 (573)
+.++++..
T Consensus 153 t~llt~~~ 160 (226)
T PF06745_consen 153 TTLLTSEM 160 (226)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEcc
Confidence 77777764
No 317
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.08 E-value=0.88 Score=53.39 Aligned_cols=160 Identities=4% Similarity=-0.138 Sum_probs=0.0
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhch--------hccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEE
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARK--------EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTV 287 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~--------~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~ 287 (573)
.|++++..-.-| .|||.+-+.-.+..+.... ..........-+|||+|. ++..|+...+..-...++++.
T Consensus 373 ~g~~~~~ade~~-~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMG-WQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVL 450 (1394)
T ss_pred CCcceeehhhhh-ccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEE
Q ss_pred EeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC--CCCCCCccE------------------EEEeCcccccC-cc
Q 008235 288 SLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK--AIDVSGVSL------------------LVVDRLDSLSK-GD 346 (573)
Q Consensus 288 ~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~--~~~l~~l~~------------------lViDEad~ll~-~~ 346 (573)
...|=-.........-- .+|||++|-..|..-+... .-.-+.+++ ++||||..+-. ..
T Consensus 451 ~Y~Girk~~~~~~~el~-~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS 529 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELL-QYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSS 529 (1394)
T ss_pred EEechhhhcccCchhhh-ccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHH
Q ss_pred hHHHHHHhcCCCCcEEEEeccCCccHHHHHHHH
Q 008235 347 TLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNL 379 (573)
Q Consensus 347 ~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~ 379 (573)
+..+.+..++ ....-.+|.|.=..+.++...+
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTPiq~Iddl~~Ll 561 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTPIQKIDDLFPLL 561 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCchhhhhhhHHHH
No 318
>PLN03025 replication factor C subunit; Provisional
Probab=90.06 E-value=3 Score=42.88 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=26.0
Q ss_pred CccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccC
Q 008235 330 GVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCL 368 (573)
Q Consensus 330 ~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~ 368 (573)
..+++||||||.|.. ...+..+++..+....+++ +++.
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il-~~n~ 138 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFAL-ACNT 138 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEE-EeCC
Confidence 478999999999876 5666677766555554444 4443
No 319
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.99 E-value=4.3 Score=44.06 Aligned_cols=20 Identities=0% Similarity=-0.306 Sum_probs=15.3
Q ss_pred CCcEEEEeCCCchhHHHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAWIV 237 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~l 237 (573)
|.-++++.||| +|||.+...
T Consensus 256 g~Vi~LvGpnG-vGKTTTiaK 275 (484)
T PRK06995 256 GGVFALMGPTG-VGKTTTTAK 275 (484)
T ss_pred CcEEEEECCCC-ccHHHHHHH
Confidence 45567788999 999987543
No 320
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=89.97 E-value=0.28 Score=53.35 Aligned_cols=49 Identities=10% Similarity=0.084 Sum_probs=39.0
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.++++++||| ||||..|++|.+- .. .+ -+||.-|--||...+....+..
T Consensus 45 ~h~lvig~tg-SGKt~~~viP~ll---~~--------~~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTG-SGKTTSFVIPNLL---NY--------PG-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCC-CCccceeeHhHHH---hc--------cC-CEEEEECCCcHHHHHHHHHHHC
Confidence 4799999999 9999999999873 22 12 6888999999988777766654
No 321
>PRK06904 replicative DNA helicase; Validated
Probab=89.92 E-value=2.6 Score=45.81 Aligned_cols=37 Identities=8% Similarity=0.103 Sum_probs=23.1
Q ss_pred CcE-EEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc
Q 008235 218 KDI-LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS 264 (573)
Q Consensus 218 ~dv-l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P 264 (573)
.++ ++.|.+| .||| +|++-+...+... .+..++|++.
T Consensus 221 G~LiiIaarPg-~GKT-afalnia~~~a~~--------~g~~Vl~fSl 258 (472)
T PRK06904 221 SDLIIVAARPS-MGKT-TFAMNLCENAAMA--------SEKPVLVFSL 258 (472)
T ss_pred CcEEEEEeCCC-CChH-HHHHHHHHHHHHh--------cCCeEEEEec
Confidence 454 5568999 9999 4666666555422 2445667653
No 322
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.91 E-value=4.1 Score=41.50 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=26.1
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEe
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
...++|+|||+|.+.. ...+..+++..+....+++.+
T Consensus 101 ~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 101 APFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEe
Confidence 3467999999998865 556777777666666655544
No 323
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.91 E-value=3.7 Score=43.09 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=63.0
Q ss_pred cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCC-CCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCC-CCCHH
Q 008235 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGF-SFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHP-GAAID 296 (573)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~-~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~g-g~~~~ 296 (573)
-+|+..|.| +||+.. ..-+...++........ ....+..+-+++.-.-+.+ +..-.+.++..+.-.. +..
T Consensus 43 A~Lf~Gp~G-~GK~~l-A~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~----i~~~~HPDl~~i~~~~~~~~-- 114 (365)
T PRK07471 43 AWLIGGPQG-IGKATL-AYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR----IAAGAHGGLLTLERSWNEKG-- 114 (365)
T ss_pred eEEEECCCC-CCHHHH-HHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH----HHccCCCCeEEEeccccccc--
Confidence 488999999 999854 34455556544311110 0011234444544222222 2222223554433210 000
Q ss_pred HHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEecc
Q 008235 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDC 367 (573)
Q Consensus 297 ~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT 367 (573)
... ...|.|-..-.+.+.+... ......+.+||||+|.|-. ...+.++++..+....++++|..
T Consensus 115 ---~~~---~~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 115 ---KRL---RTVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred ---ccc---cccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 000 1234333333333333322 2235678999999998875 55555566554445545554433
No 324
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=89.78 E-value=1.7 Score=45.23 Aligned_cols=38 Identities=5% Similarity=0.222 Sum_probs=26.8
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEe
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
....+.+||||||.|-. ...+..+++..+.+..++++|
T Consensus 139 ~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 35678999999999876 556666666655555555654
No 325
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=89.71 E-value=1.6 Score=47.36 Aligned_cols=74 Identities=11% Similarity=0.205 Sum_probs=56.0
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
...+||.|+|++-|..+++.+... ++.+..++|+.+..+.. ..++++..+||||| +.+ ...+++.+++
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~---~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaT-----dv~-~rGiDi~~v~ 312 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQ---GFSALALHGDLEQRDRDQVLVRFANRSCSVLVAT-----DVA-ARGLDIKALE 312 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEe-----ccc-ccccchhcCC
Confidence 446899999999999888877665 88999999998865443 44556679999999 333 3447788888
Q ss_pred EEEEeC
Q 008235 333 LLVVDR 338 (573)
Q Consensus 333 ~lViDE 338 (573)
+||.-+
T Consensus 313 ~VI~~d 318 (460)
T PRK11776 313 AVINYE 318 (460)
T ss_pred eEEEec
Confidence 887543
No 326
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.71 E-value=23 Score=39.63 Aligned_cols=41 Identities=5% Similarity=0.061 Sum_probs=26.0
Q ss_pred ccEEEEeCcccccCcchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhc
Q 008235 331 VSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLL 381 (573)
Q Consensus 331 l~~lViDEad~ll~~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~ 381 (573)
++++.+|-|.++ ..++..+ +-+++...||.+ +.++...++.
T Consensus 527 lky~lL~pA~~f------~evv~ea---ravvLAGGTMeP-~~e~~e~L~~ 567 (821)
T KOG1133|consen 527 LKYMLLNPAKHF------AEVVLEA---RAVVLAGGTMEP-VDELREQLFP 567 (821)
T ss_pred EEEEecCcHHHH------HHHHHHh---heeeecCCcccc-HHHHHHHhcc
Confidence 677777776643 3444333 347788888877 6666666655
No 327
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=89.69 E-value=0.19 Score=53.10 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=38.0
Q ss_pred cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
++++++||| ||||.++++|.+-.. +..+||+-|--|+........+.+
T Consensus 1 H~lv~g~tG-sGKt~~~viP~ll~~------------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTR-SGKGVGFVIPNLLTW------------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCC-CCCccEEEccchhcC------------CCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999 999999999977421 246899999999998777665544
No 328
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.62 E-value=0.31 Score=54.35 Aligned_cols=56 Identities=5% Similarity=-0.061 Sum_probs=44.0
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEe
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSL 289 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~ 289 (573)
.+++++|||| ||||..|++|.+-.. +.-+||+=|--|+...+....+++ |-+|.++
T Consensus 159 ~hvLviapTg-SGKg~g~VIPnLL~~------------~~S~VV~DpKGEl~~~Ta~~R~~~---G~~V~vf 214 (606)
T PRK13897 159 QHALLFAPTG-SGKGVGFVIPNLLFW------------EDSVVVHDIKLENYELTSGWREKQ---GQKVFVW 214 (606)
T ss_pred ceEEEEcCCC-CCcceEEehhhHHhC------------CCCEEEEeCcHHHHHHHHHHHHHC---CCeEEEE
Confidence 5799999999 999999999998542 235899999999998887776665 4444443
No 329
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.60 E-value=1.2 Score=49.69 Aligned_cols=40 Identities=13% Similarity=0.068 Sum_probs=25.9
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccCC
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLT 369 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~~ 369 (573)
...+++||||||.|.. ...|..+++..+...-+++.+ |-+
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t-te~ 158 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT-TEP 158 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe-CCh
Confidence 5678999999998875 555556666545444444433 443
No 330
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.57 E-value=3.6 Score=43.12 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=22.9
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEE
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVF 364 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~ 364 (573)
...+++||||||.|.. ...+...+...+....+++.
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILA 155 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 4568999999998875 44455555544444444443
No 331
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=89.57 E-value=15 Score=41.71 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=62.0
Q ss_pred CCcEEEEEcccHH--------HHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHc
Q 008235 255 TGPFLLFLVSSQE--------KAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSL 323 (573)
Q Consensus 255 ~~~~~Lil~Ptre--------La~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~ 323 (573)
.+.+++|+||+.+ -|.++++.+...- .++.+..++|+++..+.. ..++++..+|||||. .+ .
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vi-e 519 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VI-E 519 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----ee-e
Confidence 3668999999763 2333444443321 378899999998865443 445566799999994 22 3
Q ss_pred CCCCCCCccEEEEeCcccccCcchHHHHHHhc
Q 008235 324 KAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI 355 (573)
Q Consensus 324 ~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l 355 (573)
..+++.+++++|+..+++.. ..++.+...+.
T Consensus 520 ~GvDiP~v~~VIi~~~~r~g-ls~lhQ~~GRv 550 (630)
T TIGR00643 520 VGVDVPNATVMVIEDAERFG-LSQLHQLRGRV 550 (630)
T ss_pred cCcccCCCcEEEEeCCCcCC-HHHHHHHhhhc
Confidence 45889999999999988643 34454444444
No 332
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=89.50 E-value=1.7 Score=44.93 Aligned_cols=39 Identities=8% Similarity=0.069 Sum_probs=27.4
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEec
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFND 366 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SA 366 (573)
....+.+|||+||+|-. ...+-++++.-|++.-+++.|.
T Consensus 106 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 35678999999999986 6666666666555555555543
No 333
>CHL00181 cbbX CbbX; Provisional
Probab=89.48 E-value=4.7 Score=40.75 Aligned_cols=18 Identities=11% Similarity=-0.152 Sum_probs=15.4
Q ss_pred CCcEEEEeCCCchhHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (573)
|.++++..|+| +|||...
T Consensus 59 ~~~ill~G~pG-tGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPG-TGKTTVA 76 (287)
T ss_pred CceEEEECCCC-CCHHHHH
Confidence 56799999999 9999764
No 334
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.46 E-value=2.2 Score=39.59 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=38.4
Q ss_pred CCCccEEEEeCcccccC-----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHH
Q 008235 328 VSGVSLLVVDRLDSLSK-----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQN 378 (573)
Q Consensus 328 l~~l~~lViDEad~ll~-----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~ 378 (573)
-..+++||+||+=..++ .+++..+++.-|+...+++..-..|+.+.+.+..
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 35689999999986655 6777788888777777888777777776665543
No 335
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=89.46 E-value=5 Score=41.19 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=27.5
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEec
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFND 366 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SA 366 (573)
....+.+|||+||+|-. ...+-++++.-|++.-+++.|.
T Consensus 106 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 106 LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 45678999999999986 6666677766555554555443
No 336
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.27 E-value=1.3 Score=48.12 Aligned_cols=76 Identities=21% Similarity=0.255 Sum_probs=57.6
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
.+..+||.|+|+.-+.++...+... |+.+..++||.+..+.. ..+..+.++|||||- .+ ...+++.++
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~---g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~-----~~-~~GID~p~V 295 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNL---GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV-----AF-GMGINKPDV 295 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhc---CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec-----hh-hccCCcccc
Confidence 3567899999999999998887765 88999999998865543 344556899999994 22 235788888
Q ss_pred cEEEEeCc
Q 008235 332 SLLVVDRL 339 (573)
Q Consensus 332 ~~lViDEa 339 (573)
++||.-..
T Consensus 296 ~~VI~~~~ 303 (470)
T TIGR00614 296 RFVIHYSL 303 (470)
T ss_pred eEEEEeCC
Confidence 88885443
No 337
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=89.15 E-value=0.53 Score=48.80 Aligned_cols=48 Identities=8% Similarity=0.003 Sum_probs=32.5
Q ss_pred HHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHH
Q 008235 210 FWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (573)
Q Consensus 210 aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa 269 (573)
..-++..+++++++.||| ||||.. +-.++..+. ..-+++.+-.+.||.
T Consensus 155 l~~~v~~~~nilI~G~tG-SGKTTl-l~aLl~~i~----------~~~rivtiEd~~El~ 202 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTG-SGKTTM-SKTLISAIP----------PQERLITIEDTLELV 202 (344)
T ss_pred HHHHHHcCCeEEEECCCC-ccHHHH-HHHHHcccC----------CCCCEEEECCCcccc
Confidence 334455679999999999 999953 334443332 234677788888875
No 338
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.12 E-value=2.7 Score=46.96 Aligned_cols=37 Identities=5% Similarity=0.100 Sum_probs=24.4
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEe
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
.+.+++||||+|+|.. ...|.++++.-+....+|+.|
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEe
Confidence 4678999999998875 545555555545555555544
No 339
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=89.08 E-value=2.2 Score=41.67 Aligned_cols=52 Identities=17% Similarity=0.061 Sum_probs=30.8
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.|.-+++..++| +|||.. ++-++..+.. .+..+++++. -+-..+..+.+..+
T Consensus 23 ~g~~~~i~G~~G-~GKTtl-~~~~~~~~~~---------~g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDES-TGKSIL-SQRLAYGFLQ---------NGYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCC-CCHHHH-HHHHHHHHHh---------CCCcEEEEeC-CCCHHHHHHHHHHh
Confidence 567788889999 999965 2333333332 2456788874 33334444444443
No 340
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.06 E-value=4.8 Score=44.23 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=25.4
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEe
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
.+.+.+||||||.|.. ...+.++++..|+...+++.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 4578999999998875 555666666655555555543
No 341
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=89.01 E-value=1.9 Score=40.52 Aligned_cols=39 Identities=8% Similarity=0.176 Sum_probs=23.7
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEecc
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDC 367 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT 367 (573)
...-+++||||+|.|.. ...+...++..++.. .++|.++
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCe-EEEEEEC
Confidence 35678999999999875 444444554433333 3444443
No 342
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=88.96 E-value=2.3 Score=43.43 Aligned_cols=39 Identities=13% Similarity=0.310 Sum_probs=27.8
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEec
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFND 366 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SA 366 (573)
....++++|||||.|.. ...+..++..-+.+..+++.+-
T Consensus 107 ~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 107 EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 36789999999999986 5666666666555555555543
No 343
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=88.95 E-value=3.5 Score=46.41 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=25.1
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccCC
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLT 369 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~~ 369 (573)
...+.+||||||+|.. ...+.++++.-+....+++ .+|-+
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL-~Tt~~ 159 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL-ATTDP 159 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEE-ecCCc
Confidence 4678999999998875 5555555555444444444 34433
No 344
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=88.92 E-value=1.6 Score=42.81 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=34.4
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.|.-+++.+|+| +|||.-.+--+.+.+. .|-.++|++ +.|-..|+.+.+..+
T Consensus 20 ~gs~~lI~G~pG-sGKT~la~~~l~~~~~----------~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPG-TGKSIFSQQFLWNGLQ----------MGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCC-CCHHHHHHHHHHHHHH----------cCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 357788999999 9999754333333332 355688887 456666777766665
No 345
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=88.89 E-value=0.63 Score=43.98 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=35.9
Q ss_pred HHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCc
Q 008235 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (573)
Q Consensus 296 ~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEa 339 (573)
+.+...+.+..+.+-||||+|+..++..+.++++.+.++|+|=-
T Consensus 186 ~~~~k~~k~~~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~s 229 (271)
T KOG3089|consen 186 QAQVKLLKKRVVHLGIGTPGRIKELVKQGGFNLSPLKFIILDWS 229 (271)
T ss_pred HHHHHHHhhcceeEeecCcHHHHHHHHhcCCCCCcceeEEeecc
Confidence 34444555545788999999999999999899999999999954
No 346
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=88.88 E-value=6.3 Score=42.20 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=41.9
Q ss_pred cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE-ccc-HHHH-HHHHHHHhhhhcCCcEEEEeCCCCCH
Q 008235 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL-VSS-QEKA-AKVRSVCKPLKAFGIHTVSLHPGAAI 295 (573)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil-~Pt-reLa-~Qi~~~~~~l~~~~i~~~~~~gg~~~ 295 (573)
-++++.++| +|||.+..- +..++... .+.+++++ +-+ |.-| .|+......+ ++.+.....+.+.
T Consensus 101 vi~~vG~~G-sGKTTtaak-LA~~l~~~--------~g~kV~lV~~D~~R~~a~~QL~~~a~~~---gvp~~~~~~~~~P 167 (428)
T TIGR00959 101 VILMVGLQG-SGKTTTCGK-LAYYLKKK--------QGKKVLLVACDLYRPAAIEQLKVLGQQV---GVPVFALGKGQSP 167 (428)
T ss_pred EEEEECCCC-CcHHHHHHH-HHHHHHHh--------CCCeEEEEeccccchHHHHHHHHHHHhc---CCceEecCCCCCH
Confidence 467778999 999976432 22223211 13344444 333 3333 3444444333 6665554433332
Q ss_pred HH----HHHHhhcCCCc-EEEeCHHHH
Q 008235 296 DH----QITGLRSCEPE-FLVSTPERL 317 (573)
Q Consensus 296 ~~----~~~~l~~~~~~-IlV~TP~rL 317 (573)
.. -...+...++| |||=|||++
T Consensus 168 ~~i~~~al~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 168 VEIARRALEYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 11 11222222565 778888875
No 347
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.87 E-value=6.6 Score=42.96 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=34.3
Q ss_pred CHHHHHHHHHcCCCCCCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCc-cHHHHHHHH
Q 008235 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTY-TSVPAVQNL 379 (573)
Q Consensus 313 TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~-~~~~~~~~~ 379 (573)
+++.|...+.. +.+.++|+||.+-+... ..++..+... ....-+++++++... .+.+.++.|
T Consensus 415 d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 415 SAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred cHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHHHHHHHHH
Confidence 34455555543 34578999999976543 2233333322 233457778887653 345555554
No 348
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.85 E-value=4.1 Score=41.65 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=25.2
Q ss_pred CccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEe
Q 008235 330 GVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 330 ~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~S 365 (573)
..++|||||+|.+.. ...+..+++..+.+.++++.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467999999998833 456666777766666655543
No 349
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=88.78 E-value=2.2 Score=48.10 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=56.1
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
...+||.|+|+.-+.++++.+... ++.+.+++|+.+.... ...++.+..+||||| +++.. .+++.++.
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~---g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----dv~ar-GIDip~V~ 315 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERN---GYNSAALNGDMNQALREQTLERLKDGRLDILIAT-----DVAAR-GLDVERIS 315 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhC---CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----chHhc-CCCcccCC
Confidence 357999999999999888877654 7888999999876544 345566789999999 34444 47889999
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||.
T Consensus 316 ~VI~ 319 (629)
T PRK11634 316 LVVN 319 (629)
T ss_pred EEEE
Confidence 9875
No 350
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=88.64 E-value=3.7 Score=39.80 Aligned_cols=52 Identities=10% Similarity=0.048 Sum_probs=29.2
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.|.-+++.+++| +|||...+--+.+.+ . .+-.+++++- .+.+.++.+.+..+
T Consensus 19 ~G~~~~i~G~~G-~GKT~l~~~~~~~~~-~---------~g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPG-TGKTIFCLHFAYKGL-R---------DGDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCC-CChHHHHHHHHHHHH-h---------cCCeEEEEEc-cCCHHHHHHHHHHh
Confidence 457788899999 999854332222222 2 2345666653 33445555544443
No 351
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=88.64 E-value=10 Score=38.78 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=79.8
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhh-hhcCCcEEEEeCCCC-CHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGA-AIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~-l~~~~i~~~~~~gg~-~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
.+--+||.+|+.+-..|+...++. +. ..++++++... ...+....++.|..+|||+|. .|+ +.+.+.+++
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~--~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT-----ILE-RGVTfp~vd 375 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLP--KETIASVHSEDQHRKEKVEAFRDGKITLLITTT-----ILE-RGVTFPNVD 375 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCC--ccceeeeeccCccHHHHHHHHHcCceEEEEEee-----hhh-cccccccce
Confidence 356789999999999999999854 43 34445555544 355667889998899999994 344 457789999
Q ss_pred EEEEeCcccccCcchHHHHHHhcC-----CCCcEEEEeccCCccH
Q 008235 333 LLVVDRLDSLSKGDTLSLIRQSIS-----GKPHTVVFNDCLTYTS 372 (573)
Q Consensus 333 ~lViDEad~ll~~~~l~~Il~~l~-----~~~q~l~~SAT~~~~~ 372 (573)
.+|++--|+++....+-+|-.... +.--+++|---.+..+
T Consensus 376 V~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM 420 (441)
T COG4098 376 VFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAM 420 (441)
T ss_pred EEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHH
Confidence 999999999988777777776653 3445666655444443
No 352
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.42 E-value=1.8 Score=43.28 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=29.2
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHH
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa 269 (573)
..+.+++++++|| ||||.. +-.++..+... .-+++++-.+.|+-
T Consensus 125 ~~~~~ili~G~tG-SGKTT~-l~all~~i~~~---------~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 125 RGRGNILISGPTG-SGKTTL-LNALLEEIPPE---------DERIVTIEDPPELR 168 (270)
T ss_dssp HTTEEEEEEESTT-SSHHHH-HHHHHHHCHTT---------TSEEEEEESSS-S-
T ss_pred ccceEEEEECCCc-cccchH-HHHHhhhcccc---------ccceEEecccccee
Confidence 3468999999999 999954 45555544322 24678887777764
No 353
>PRK07004 replicative DNA helicase; Provisional
Probab=88.23 E-value=1.6 Score=47.29 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=27.0
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc---ccHHHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKV 272 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~---PtreLa~Qi 272 (573)
|.=+++.|.+| +||| +|++-+..++... .+..++|++ +..+|+..+
T Consensus 213 g~liviaarpg-~GKT-~~al~ia~~~a~~--------~~~~v~~fSlEM~~~ql~~R~ 261 (460)
T PRK07004 213 GELIIVAGRPS-MGKT-AFSMNIGEYVAVE--------YGLPVAVFSMEMPGTQLAMRM 261 (460)
T ss_pred CceEEEEeCCC-CCcc-HHHHHHHHHHHHH--------cCCeEEEEeCCCCHHHHHHHH
Confidence 34456678999 9999 5666666554322 244566665 344454433
No 354
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.22 E-value=1.3 Score=47.91 Aligned_cols=26 Identities=8% Similarity=0.369 Sum_probs=17.1
Q ss_pred CCccEEEEeCcccccCcchHHHHHHhc
Q 008235 329 SGVSLLVVDRLDSLSKGDTLSLIRQSI 355 (573)
Q Consensus 329 ~~l~~lViDEad~ll~~~~l~~Il~~l 355 (573)
...+.+||||||+|-. ..+..++..+
T Consensus 120 g~~KV~IIDEah~Ls~-~A~NALLKtL 145 (484)
T PRK14956 120 GKYKVYIIDEVHMLTD-QSFNALLKTL 145 (484)
T ss_pred CCCEEEEEechhhcCH-HHHHHHHHHh
Confidence 3568999999998764 3344444444
No 355
>PF05729 NACHT: NACHT domain
Probab=88.07 E-value=2.6 Score=37.97 Aligned_cols=25 Identities=4% Similarity=-0.068 Sum_probs=16.7
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHHHhc
Q 008235 220 ILETSGSSSTIVQIAWIVATAADSIAR 246 (573)
Q Consensus 220 vl~~A~TG~SGKTlaf~lp~l~~l~~~ 246 (573)
+++.++.| +|||.. +--++..+...
T Consensus 3 l~I~G~~G-~GKStl-l~~~~~~~~~~ 27 (166)
T PF05729_consen 3 LWISGEPG-SGKSTL-LRKLAQQLAEE 27 (166)
T ss_pred EEEECCCC-CChHHH-HHHHHHHHHhc
Confidence 67889999 999964 34444444433
No 356
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=88.07 E-value=5.6 Score=44.30 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=23.9
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccCC
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLT 369 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~~ 369 (573)
...-+++||||+|.|.. ...+..+++..+... +++|.+|-+
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~-ifIlatt~~ 159 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHV-IFILATTEP 159 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCe-EEEEEeCCh
Confidence 35678999999998864 444444444433332 444444544
No 357
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=87.85 E-value=2.5 Score=47.63 Aligned_cols=73 Identities=18% Similarity=0.228 Sum_probs=56.5
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
.+..+||.|+|+.-|.+++..+... |+.+..++||.+..... ..+..+..+|||||. .+ ...+++.++
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~---g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~-----a~-~~GIDip~V 305 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSR---GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV-----AF-GMGINKPNV 305 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhC---CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEec-----hh-hccCCCCCc
Confidence 3567899999999999888877765 88999999998865443 344456789999994 22 345788999
Q ss_pred cEEEE
Q 008235 332 SLLVV 336 (573)
Q Consensus 332 ~~lVi 336 (573)
++||.
T Consensus 306 ~~VI~ 310 (607)
T PRK11057 306 RFVVH 310 (607)
T ss_pred CEEEE
Confidence 98885
No 358
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=87.76 E-value=4.7 Score=40.73 Aligned_cols=18 Identities=11% Similarity=-0.151 Sum_probs=15.4
Q ss_pred CCcEEEEeCCCchhHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (573)
+.++++..|+| ||||.+.
T Consensus 58 ~~~vll~G~pG-TGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPG-TGKTTVA 75 (284)
T ss_pred CceEEEEcCCC-CCHHHHH
Confidence 46899999999 9999754
No 359
>PRK10867 signal recognition particle protein; Provisional
Probab=87.73 E-value=7.9 Score=41.52 Aligned_cols=86 Identities=12% Similarity=0.061 Sum_probs=42.0
Q ss_pred cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc-c-cHHHH-HHHHHHHhhhhcCCcEEEEeCCCCCH
Q 008235 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV-S-SQEKA-AKVRSVCKPLKAFGIHTVSLHPGAAI 295 (573)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~-P-treLa-~Qi~~~~~~l~~~~i~~~~~~gg~~~ 295 (573)
-++++.++| +|||.+..- +..++... .+.+++++. - .|.-| .|+....... ++.+.....+.+.
T Consensus 102 vI~~vG~~G-sGKTTtaak-LA~~l~~~--------~G~kV~lV~~D~~R~aa~eQL~~~a~~~---gv~v~~~~~~~dp 168 (433)
T PRK10867 102 VIMMVGLQG-AGKTTTAGK-LAKYLKKK--------KKKKVLLVAADVYRPAAIEQLKTLGEQI---GVPVFPSGDGQDP 168 (433)
T ss_pred EEEEECCCC-CcHHHHHHH-HHHHHHHh--------cCCcEEEEEccccchHHHHHHHHHHhhc---CCeEEecCCCCCH
Confidence 467778999 999975432 22233222 133444443 3 34433 2444444333 6665544323232
Q ss_pred HHHH----HHhhcCCCc-EEEeCHHHH
Q 008235 296 DHQI----TGLRSCEPE-FLVSTPERL 317 (573)
Q Consensus 296 ~~~~----~~l~~~~~~-IlV~TP~rL 317 (573)
..-. ......++| |||=||||+
T Consensus 169 ~~i~~~a~~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 169 VDIAKAALEEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 2211 112222454 777899876
No 360
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=87.62 E-value=9.1 Score=39.51 Aligned_cols=111 Identities=15% Similarity=0.101 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhhhcCCcEEEEe-CCCCCHHHHHHHhhcCCCcE--EEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC
Q 008235 268 KAAKVRSVCKPLKAFGIHTVSL-HPGAAIDHQITGLRSCEPEF--LVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (573)
Q Consensus 268 La~Qi~~~~~~l~~~~i~~~~~-~gg~~~~~~~~~l~~~~~~I--lV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~ 344 (573)
++..+.+.+..+...|..++.+ +.|..... .. +.. -+|+ +|..|+.-.++...+.-.+.-.+++||==+|.+..
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~-~~-i~~-~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSE-TA-VAG-MVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGDNK 209 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccch-hH-HHH-hCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhcccch
Confidence 4555666666664445555443 22322111 11 111 2443 55555554444332221233335789888886543
Q ss_pred ------cchHHHHHHhcCC-----CCcEEEEeccCCccHHHHHHHHhc
Q 008235 345 ------GDTLSLIRQSISG-----KPHTVVFNDCLTYTSVPAVQNLLL 381 (573)
Q Consensus 345 ------~~~l~~Il~~l~~-----~~q~l~~SAT~~~~~~~~~~~~l~ 381 (573)
..++...+..+++ ..+++.+||+-...+.++...+..
T Consensus 210 ~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~ 257 (332)
T PRK09435 210 TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIED 257 (332)
T ss_pred hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3344444444332 257899999988777776665543
No 361
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.61 E-value=3 Score=46.79 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=25.2
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccC
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCL 368 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~ 368 (573)
...+.+||||+|+|.. ...+..+++..+....++ |.+|-
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FI-LaTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFL-FATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEE-EEECC
Confidence 3568999999997764 555666666655444444 44443
No 362
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.47 E-value=3.1 Score=46.63 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=23.2
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEecc
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDC 367 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT 367 (573)
+...++|||||+|.|.. ...+...++..+.. -+++|.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~-tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH-AIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCC-eEEEEEeC
Confidence 35678999999998764 44444444443333 34444443
No 363
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=87.47 E-value=2 Score=48.41 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=61.3
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCC--------CCCHHHHHH---HhhcCCCcEEEeCHHHHHHHHHc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHP--------GAAIDHQIT---GLRSCEPEFLVSTPERLLKLVSL 323 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~g--------g~~~~~~~~---~l~~~~~~IlV~TP~rL~~~l~~ 323 (573)
...++||.|-||+.|.-+..++..+...+++...++| |++...|.. .++.|..+|||||- +-.
T Consensus 412 ~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATS------V~E 485 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATS------VAE 485 (746)
T ss_pred CCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEec------chh
Confidence 5789999999999999999999987666888888777 455555544 45668899999993 444
Q ss_pred CCCCCCCccEEEEeCc
Q 008235 324 KAIDVSGVSLLVVDRL 339 (573)
Q Consensus 324 ~~~~l~~l~~lViDEa 339 (573)
-.+++..+++||-=++
T Consensus 486 EGLDI~ec~lVIcYd~ 501 (746)
T KOG0354|consen 486 EGLDIGECNLVICYDY 501 (746)
T ss_pred ccCCcccccEEEEecC
Confidence 5678888888886444
No 364
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=87.37 E-value=28 Score=39.86 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=60.9
Q ss_pred CCcEEEEEcccHH--------HHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHc
Q 008235 255 TGPFLLFLVSSQE--------KAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSL 323 (573)
Q Consensus 255 ~~~~~Lil~Ptre--------La~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~ 323 (573)
.+-+++|+||+.+ -+..+++.+...- .++.+..++|+++..+.. ..+.++..+|||||. .+ .
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vi-e 542 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAF-PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT-----VI-E 542 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----ce-e
Confidence 3668999999653 1233333333321 158899999998765443 445666789999994 23 3
Q ss_pred CCCCCCCccEEEEeCcccccCcchHHHHHHhc
Q 008235 324 KAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI 355 (573)
Q Consensus 324 ~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l 355 (573)
..+++.+++++|+..+++.. ..++.+...+.
T Consensus 543 ~GiDip~v~~VIi~~~~r~g-ls~lhQ~~GRv 573 (681)
T PRK10917 543 VGVDVPNATVMVIENAERFG-LAQLHQLRGRV 573 (681)
T ss_pred eCcccCCCcEEEEeCCCCCC-HHHHHHHhhcc
Confidence 45789999999999998653 34444444444
No 365
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.36 E-value=4.6 Score=43.96 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=24.5
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccC
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCL 368 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~ 368 (573)
....+++||||+|.|-. ...+...++..++...++ |.+|-
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI-latte 155 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI-LATTE 155 (491)
T ss_pred cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE-EEeCC
Confidence 35788999999997764 445555555544443344 44443
No 366
>PTZ00424 helicase 45; Provisional
Probab=87.34 E-value=3.5 Score=43.61 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=54.5
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
..++||.|+|++-+..+.+.+... ++.+..++|+.+..+.. ..++++..+|||||- .+ ...+++.+++
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~---~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----~l-~~GiDip~v~ 337 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHER---DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-----LL-ARGIDVQQVS 337 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHC---CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----cc-cCCcCcccCC
Confidence 457899999999888877766544 78899999998866543 445667799999993 23 3457888888
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
++|.
T Consensus 338 ~VI~ 341 (401)
T PTZ00424 338 LVIN 341 (401)
T ss_pred EEEE
Confidence 8875
No 367
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=87.32 E-value=4 Score=47.45 Aligned_cols=74 Identities=9% Similarity=0.184 Sum_probs=56.7
Q ss_pred cEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhc---CCCcEEEeCHHHHHHHHHcCCCCCCCccE
Q 008235 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRS---CEPEFLVSTPERLLKLVSLKAIDVSGVSL 333 (573)
Q Consensus 257 ~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~---~~~~IlV~TP~rL~~~l~~~~~~l~~l~~ 333 (573)
..+||.+|+++-+.++++.+......++.+..+||+.+..++...+.. +...|||+|. +....+++.+|++
T Consensus 210 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn------IAErgItIp~V~~ 283 (819)
T TIGR01970 210 GSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN------IAETSLTIEGIRV 283 (819)
T ss_pred CcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc------hHhhcccccCceE
Confidence 469999999999988888887632247899999999998888776643 3468999994 4445678888887
Q ss_pred EEE
Q 008235 334 LVV 336 (573)
Q Consensus 334 lVi 336 (573)
||=
T Consensus 284 VID 286 (819)
T TIGR01970 284 VID 286 (819)
T ss_pred EEE
Confidence 553
No 368
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=87.28 E-value=2.1 Score=47.28 Aligned_cols=73 Identities=18% Similarity=0.295 Sum_probs=55.4
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
.+.+||.|+|+.-|..+.+.+... .++++..++|+.+..+.. ..++.+..+|||||. .+. ..+++.+++
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~--~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~-rGiDip~v~ 438 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVV--TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLG-RGVDLLRVR 438 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhc--cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhh-ccCCcccCC
Confidence 467999999999988887766543 378889999998865543 455667899999994 333 447888898
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||.
T Consensus 439 ~VI~ 442 (518)
T PLN00206 439 QVII 442 (518)
T ss_pred EEEE
Confidence 8885
No 369
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=87.21 E-value=3 Score=46.70 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=25.8
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEe
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
+...+++||||+|.|.. ...+...++..+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 45678999999998875 555555565555555555543
No 370
>PF13173 AAA_14: AAA domain
Probab=87.17 E-value=4.9 Score=35.03 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=25.4
Q ss_pred CccEEEEeCcccccC-cchHHHHHHhcCCCCcEEEEec
Q 008235 330 GVSLLVVDRLDSLSK-GDTLSLIRQSISGKPHTVVFND 366 (573)
Q Consensus 330 ~l~~lViDEad~ll~-~~~l~~Il~~l~~~~q~l~~SA 366 (573)
.-.+|+|||+|.+-+ ...+..+...- ++.++++.+-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGS 97 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEcc
Confidence 457899999999877 66777776654 4556665443
No 371
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=87.12 E-value=6.7 Score=42.16 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=23.5
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~ 263 (573)
.=+++.|++| +||| +|++-++.++... .+..+++++
T Consensus 196 ~l~vi~g~pg-~GKT-~~~l~~a~~~a~~--------~g~~vl~~S 231 (434)
T TIGR00665 196 DLIILAARPS-MGKT-AFALNIAENAAIK--------EGKPVAFFS 231 (434)
T ss_pred eEEEEEeCCC-CChH-HHHHHHHHHHHHh--------CCCeEEEEe
Confidence 4456678999 9999 5666666554432 244567775
No 372
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=87.09 E-value=4.7 Score=44.87 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=23.8
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccCC
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLT 369 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~~ 369 (573)
..-+++||||||.|-. ...+..+++..+.. -+++|.+|-+
T Consensus 118 ~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~-tvfIL~Tt~~ 159 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSAWNALLKTLEEPPKH-VVFIFATTEF 159 (605)
T ss_pred CCcEEEEEechHhCCHHHHHHHHHHHHhCCCc-EEEEEECCCh
Confidence 3467899999998764 44455555554433 3444444443
No 373
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=87.09 E-value=0.58 Score=52.85 Aligned_cols=49 Identities=10% Similarity=-0.058 Sum_probs=39.0
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.+++++|||| ||||..|++|-+-.. ...+||+=|--|+...+....+++
T Consensus 140 ~hvlviApTg-SGKgvg~VIPnLL~~------------~gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTR-AGKGVGVVIPTLLTF------------KGSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCC-CCceeeehHhHHhcC------------CCCEEEEeCCchHHHHHHHHHHhC
Confidence 5899999999 999999999987432 225899999999987776665554
No 374
>PRK08006 replicative DNA helicase; Provisional
Probab=87.06 E-value=7.1 Score=42.45 Aligned_cols=36 Identities=8% Similarity=0.113 Sum_probs=22.9
Q ss_pred CcE-EEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc
Q 008235 218 KDI-LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (573)
Q Consensus 218 ~dv-l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~ 263 (573)
.++ ++.|.+| .||| +|++-+...+... .+..++|++
T Consensus 224 G~LiiIaarPg-mGKT-afalnia~~~a~~--------~g~~V~~fS 260 (471)
T PRK08006 224 SDLIIVAARPS-MGKT-TFAMNLCENAAML--------QDKPVLIFS 260 (471)
T ss_pred CcEEEEEeCCC-CCHH-HHHHHHHHHHHHh--------cCCeEEEEe
Confidence 454 5568999 9999 6666666555422 144566665
No 375
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=86.98 E-value=4.6 Score=34.77 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=12.3
Q ss_pred ccEEEEeCcccccC
Q 008235 331 VSLLVVDRLDSLSK 344 (573)
Q Consensus 331 l~~lViDEad~ll~ 344 (573)
-.+|+|||+|.+..
T Consensus 59 ~~vl~iDe~d~l~~ 72 (132)
T PF00004_consen 59 PCVLFIDEIDKLFP 72 (132)
T ss_dssp SEEEEEETGGGTSH
T ss_pred ceeeeeccchhccc
Confidence 47999999999886
No 376
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.79 E-value=1.8 Score=49.94 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=27.1
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccCCcc
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTYT 371 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~~~~ 371 (573)
...+++||||||+|-. ...|.++++.-+....+++. +|-+..
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa-TTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA-TTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE-CCCchh
Confidence 4578999999998874 55566666654555544443 444443
No 377
>PRK05748 replicative DNA helicase; Provisional
Probab=86.63 E-value=11 Score=40.68 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=23.6
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~ 263 (573)
.=+++.|+|| +||| +|++-++.++... .+..++|++
T Consensus 204 ~livIaarpg-~GKT-~~al~ia~~~a~~--------~g~~v~~fS 239 (448)
T PRK05748 204 DLIIVAARPS-VGKT-AFALNIAQNVATK--------TDKNVAIFS 239 (448)
T ss_pred ceEEEEeCCC-CCch-HHHHHHHHHHHHh--------CCCeEEEEe
Confidence 4456678999 9999 5677666655422 244566665
No 378
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=86.51 E-value=4.6 Score=46.99 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=57.8
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhh---cCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLR---SCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~---~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
...+||.+|++.-+.++++.+......++.+..+||+.+..++...+. .+...|||+|. +-...+++.+++
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn------IAErsLtIp~V~ 285 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN------IAETSLTIEGIR 285 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc------hHHhcccccCce
Confidence 356999999999999999888763224788999999999887776664 33478999995 444567888998
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||=
T Consensus 286 ~VID 289 (812)
T PRK11664 286 LVVD 289 (812)
T ss_pred EEEE
Confidence 7663
No 379
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=86.41 E-value=4.7 Score=37.99 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=37.5
Q ss_pred CCCccEEEEeCcccccC-----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHH
Q 008235 328 VSGVSLLVVDRLDSLSK-----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQN 378 (573)
Q Consensus 328 l~~l~~lViDEad~ll~-----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~ 378 (573)
-...++||+||+=..++ .+++..++..-|+..-+|+..-..|+++.+.+..
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADl 168 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADL 168 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCch
Confidence 35688999999987766 6777777777677767777766777766665543
No 380
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=86.30 E-value=14 Score=42.13 Aligned_cols=79 Identities=27% Similarity=0.332 Sum_probs=60.6
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
.+.++||+|+|+.-|..+.+.+... |+.+..++|+.+.... ...++.+.++|+||| +.+. ..+++..+
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~---gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t-----~~L~-rGfdlp~v 515 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL---GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDIPEV 515 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc---ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEe-----CHHh-CCccccCC
Confidence 4778999999999998888877665 8999999898775432 344556678999999 3344 45788999
Q ss_pred cEEEEeCcccc
Q 008235 332 SLLVVDRLDSL 342 (573)
Q Consensus 332 ~~lViDEad~l 342 (573)
+++|+=|++..
T Consensus 516 ~lVii~d~eif 526 (652)
T PRK05298 516 SLVAILDADKE 526 (652)
T ss_pred cEEEEeCCccc
Confidence 99998888743
No 381
>PRK08840 replicative DNA helicase; Provisional
Probab=86.24 E-value=7.7 Score=42.09 Aligned_cols=25 Identities=8% Similarity=0.060 Sum_probs=16.8
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHH
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSI 244 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~ 244 (573)
.=+++.|.+| .||| +|++-+...+.
T Consensus 218 ~LiviaarPg-~GKT-afalnia~~~a 242 (464)
T PRK08840 218 DLIIVAARPS-MGKT-TFAMNLCENAA 242 (464)
T ss_pred ceEEEEeCCC-CchH-HHHHHHHHHHH
Confidence 3455568999 9999 55665555543
No 382
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.14 E-value=0.53 Score=47.06 Aligned_cols=121 Identities=18% Similarity=0.205 Sum_probs=59.1
Q ss_pred cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH
Q 008235 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ 298 (573)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~ 298 (573)
=|+|..||| ||||.. +..|+.++.......-..-..|.=.|-.+-+.|..|=. .|.++.++. ...
T Consensus 127 LILVTGpTG-SGKSTT-lAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QRE--------vG~dT~sF~-----~aL 191 (353)
T COG2805 127 LILVTGPTG-SGKSTT-LAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQRE--------VGRDTLSFA-----NAL 191 (353)
T ss_pred eEEEeCCCC-CcHHHH-HHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHH--------hcccHHHHH-----HHH
Confidence 367778999 999966 56788888765322100001233333334444544321 122222211 122
Q ss_pred HHHhhcCCCcEEEeCHHHHHHH--HHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCCC
Q 008235 299 ITGLRSCEPEFLVSTPERLLKL--VSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGK 358 (573)
Q Consensus 299 ~~~l~~~~~~IlV~TP~rL~~~--l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~ 358 (573)
...|+. .||||+-= -+.|+ +. -.+....-.+||+-=.|.......+.+|+..+|..
T Consensus 192 raALRe-DPDVIlvG--EmRD~ETi~-~ALtAAETGHLV~~TLHT~sA~~ti~RiidvFp~~ 249 (353)
T COG2805 192 RAALRE-DPDVILVG--EMRDLETIR-LALTAAETGHLVFGTLHTNSAAKTIDRIIDVFPAE 249 (353)
T ss_pred HHHhhc-CCCEEEEe--ccccHHHHH-HHHHHHhcCCEEEEecccccHHHHHHHHHHhCChh
Confidence 345555 68876542 11110 10 00112234566766666544466777777776543
No 383
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.88 E-value=4.5 Score=44.65 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=25.0
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEe
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
.+.+++||||+|.|.. ...+.+.++..+....+++.+
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 4678999999998875 455555565555555555544
No 384
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=85.84 E-value=11 Score=38.82 Aligned_cols=104 Identities=10% Similarity=0.026 Sum_probs=47.5
Q ss_pred EEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHH---HHhhh-hc-CCcEEEEeCCCCCH
Q 008235 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS---VCKPL-KA-FGIHTVSLHPGAAI 295 (573)
Q Consensus 221 l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~---~~~~l-~~-~~i~~~~~~gg~~~ 295 (573)
++.++.| +|||.+.++-++..+...+ .+..++++..+..|...+.. .+..+ .. +.+.........
T Consensus 1 ~i~~~r~-~GKT~~~~~~~~~~~~~~~-------~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 70 (384)
T PF03237_consen 1 LINGGRG-SGKTTLIAIWFLWWALTRP-------PGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRK-- 70 (384)
T ss_dssp -EEE-SS-S-HHHHHHHHHHHHHHSSS-------S--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSE--
T ss_pred CCcCCcc-ccHHHHHHHHHHHHHhhCC-------CCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCc--
Confidence 4578899 9999998888887776553 12455666444444444333 22222 22 122222111100
Q ss_pred HHHHHHhhcCCCcEEEeCHHH--HHHHHHcCCCCCCCccEEEEeCcccccC
Q 008235 296 DHQITGLRSCEPEFLVSTPER--LLKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (573)
Q Consensus 296 ~~~~~~l~~~~~~IlV~TP~r--L~~~l~~~~~~l~~l~~lViDEad~ll~ 344 (573)
-.+.+ +..|.+.+-+. -.+-+.. ..+.++++||+-.+.+
T Consensus 71 ----~~~~n-G~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~~ 111 (384)
T PF03237_consen 71 ----IILPN-GSRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVPD 111 (384)
T ss_dssp ----EEETT-S-EEEEES-----SHHHHHT-----S--SEEEEESGGGSTT
T ss_pred ----EEecC-ceEEEEeccccccccccccc-----cccceeeeeecccCch
Confidence 00123 45566665221 1111221 5678999999987765
No 385
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=85.83 E-value=5.8 Score=44.81 Aligned_cols=37 Identities=11% Similarity=0.130 Sum_probs=24.9
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEe
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
...+++||||+|.|-. ...|.+++...+....+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 4678999999997764 455666666555555555543
No 386
>PRK13342 recombination factor protein RarA; Reviewed
Probab=85.60 E-value=4.4 Score=43.28 Aligned_cols=38 Identities=8% Similarity=0.197 Sum_probs=23.4
Q ss_pred CccEEEEeCcccccCcchHHHHHHhcCCCCcEEEEeccCC
Q 008235 330 GVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLT 369 (573)
Q Consensus 330 ~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~l~~SAT~~ 369 (573)
.-.+|+|||+|++.. .+...++..+.. ..++++.+|-.
T Consensus 92 ~~~vL~IDEi~~l~~-~~q~~LL~~le~-~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNK-AQQDALLPHVED-GTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCH-HHHHHHHHHhhc-CcEEEEEeCCC
Confidence 456899999999864 333344444433 45666666543
No 387
>PRK08760 replicative DNA helicase; Provisional
Probab=85.58 E-value=8.9 Score=41.77 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=23.1
Q ss_pred Cc-EEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc
Q 008235 218 KD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS 264 (573)
Q Consensus 218 ~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P 264 (573)
.+ +++.|++| .||| +|++-+...+... .+..++|++.
T Consensus 229 G~LivIaarPg-~GKT-afal~iA~~~a~~--------~g~~V~~fSl 266 (476)
T PRK08760 229 TDLIILAARPA-MGKT-TFALNIAEYAAIK--------SKKGVAVFSM 266 (476)
T ss_pred CceEEEEeCCC-CChh-HHHHHHHHHHHHh--------cCCceEEEec
Confidence 45 45568999 9999 5666666555422 2445666653
No 388
>PHA00729 NTP-binding motif containing protein
Probab=85.57 E-value=6.2 Score=38.28 Aligned_cols=71 Identities=11% Similarity=0.013 Sum_probs=37.4
Q ss_pred CcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCc--------chHHHHHHhcCCCCcEEEEeccCCccHHHHHH
Q 008235 307 PEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKG--------DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377 (573)
Q Consensus 307 ~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~--------~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~ 377 (573)
...++.+...|.+.+....-....+.+|||||+-.-+.. .....+...+....+++.|...-+..+...++
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr 137 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLR 137 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHH
Confidence 345566666666666432222234678999994221110 12223444455567778877765554444333
No 389
>PRK05636 replicative DNA helicase; Provisional
Probab=85.48 E-value=14 Score=40.61 Aligned_cols=24 Identities=0% Similarity=-0.033 Sum_probs=15.9
Q ss_pred CcE-EEEeCCCchhHHHHHHHHHHHHH
Q 008235 218 KDI-LETSGSSSTIVQIAWIVATAADS 243 (573)
Q Consensus 218 ~dv-l~~A~TG~SGKTlaf~lp~l~~l 243 (573)
.++ ++.|.|| +||| +|.+-++..+
T Consensus 265 G~Liiiaarpg-~GKT-~~al~~a~~~ 289 (505)
T PRK05636 265 GQMIIVAARPG-VGKS-TLALDFMRSA 289 (505)
T ss_pred CceEEEEeCCC-CCHH-HHHHHHHHHH
Confidence 455 5568999 9999 4455554443
No 390
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=85.47 E-value=6.5 Score=41.67 Aligned_cols=43 Identities=9% Similarity=0.092 Sum_probs=26.9
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccCCccH
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTYTS 372 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~~~~~ 372 (573)
.+.+.+||||||+|.. ...+..+++.-+++. ++++.+|-+..+
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~-~fIL~a~~~~~l 160 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRT-VWLLCAPSPEDV 160 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCC-eEEEEECChHHC
Confidence 5678999999999976 444555555544444 445555544433
No 391
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=85.44 E-value=1.3 Score=45.71 Aligned_cols=46 Identities=20% Similarity=0.129 Sum_probs=30.8
Q ss_pred HHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHH
Q 008235 213 CYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAA 270 (573)
Q Consensus 213 ~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~ 270 (573)
++..+++++++.+|| ||||. ++-.++..+. ..-+++++=-+.||..
T Consensus 156 ~v~~~~nili~G~tg-SGKTT-ll~aL~~~ip----------~~~ri~tiEd~~El~l 201 (332)
T PRK13900 156 AVISKKNIIISGGTS-TGKTT-FTNAALREIP----------AIERLITVEDAREIVL 201 (332)
T ss_pred HHHcCCcEEEECCCC-CCHHH-HHHHHHhhCC----------CCCeEEEecCCCcccc
Confidence 445579999999999 99994 4444454442 2346777766777643
No 392
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=85.37 E-value=6.5 Score=39.21 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHhc-C-CcEEEEeCCCchhHHHHHHHHHHHHH
Q 008235 204 NSWGIEFWKCYSS-A-KDILETSGSSSTIVQIAWIVATAADS 243 (573)
Q Consensus 204 t~iQ~~aip~il~-g-~dvl~~A~TG~SGKTlaf~lp~l~~l 243 (573)
++-|.+.+..++. . .-+++..||| ||||.. +-.++..+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tG-SGKTT~-l~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTG-SGKTTT-LYSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCC-CcHHHH-HHHHHhhh
Confidence 4556666665554 3 3578889999 999964 44455554
No 393
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=85.32 E-value=4 Score=45.86 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=54.5
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+..+||.|+|+..|.++++.+... |+.+..++||.+..... ..+..+.++|||||- .+. ..+++.+++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~---g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~-----a~~-~GID~p~v~ 294 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQ---GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATN-----AFG-MGIDKPNVR 294 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC---CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEec-----hhh-ccCcCCCCC
Confidence 456899999999999998877654 88899999998865443 334455799999994 222 346788899
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||.
T Consensus 295 ~VI~ 298 (591)
T TIGR01389 295 FVIH 298 (591)
T ss_pred EEEE
Confidence 8885
No 394
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.23 E-value=10 Score=38.04 Aligned_cols=125 Identities=17% Similarity=0.211 Sum_probs=71.0
Q ss_pred HHHHhcC-----CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcE
Q 008235 211 WKCYSSA-----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH 285 (573)
Q Consensus 211 ip~il~g-----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~ 285 (573)
+|.+..| +-+++..|.| +||+ |+.-++..- .....+-+.+-.|+..+...-.+|
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPG-TGKS--YLAKAVATE------------AnSTFFSvSSSDLvSKWmGESEkL------ 213 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPG-TGKS--YLAKAVATE------------ANSTFFSVSSSDLVSKWMGESEKL------ 213 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCC-CcHH--HHHHHHHhh------------cCCceEEeehHHHHHHHhccHHHH------
Confidence 4667776 4688999999 9995 655555321 114567777777776554333322
Q ss_pred EEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC------cchHHHHHHhc----
Q 008235 286 TVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK------GDTLSLIRQSI---- 355 (573)
Q Consensus 286 ~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~------~~~l~~Il~~l---- 355 (573)
.. .|.+|-+. +.-..+.|||+|.|.. .+..++|-..+
T Consensus 214 -------------Vk---------------nLFemARe-----~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQM 260 (439)
T KOG0739|consen 214 -------------VK---------------NLFEMARE-----NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQM 260 (439)
T ss_pred -------------HH---------------HHHHHHHh-----cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhh
Confidence 00 12222222 2345788999998776 33444444333
Q ss_pred ----CCCCcEEEEeccCCccHHH-HHHHHhcCCceEEEcC
Q 008235 356 ----SGKPHTVVFNDCLTYTSVP-AVQNLLLGSINRLSLN 390 (573)
Q Consensus 356 ----~~~~q~l~~SAT~~~~~~~-~~~~~l~~~~~~i~~~ 390 (573)
..+--++++.||--+++.+ .+++-+...+ +|.+.
T Consensus 261 qGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRI-YIPLP 299 (439)
T KOG0739|consen 261 QGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRI-YIPLP 299 (439)
T ss_pred hccccCCCceEEEecCCCchhHHHHHHHHhhcce-eccCC
Confidence 1334588899998777554 3344343332 44443
No 395
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=84.86 E-value=5.2 Score=43.85 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=22.7
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEecc
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDC 367 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT 367 (573)
...-+++||||+|.|.. ...+...++..+ ..-+++|.+|
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp-~~~vfI~aTt 166 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPP-PHIIFIFATT 166 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcC-CCEEEEEEeC
Confidence 35678999999997764 444444444322 3334444444
No 396
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=84.85 E-value=2.8 Score=47.96 Aligned_cols=122 Identities=11% Similarity=0.037 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC---C-------------------CCeeeecCC--
Q 008235 411 EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK---G-------------------YSISTGSNC-- 466 (573)
Q Consensus 411 ~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~---g-------------------~~~~~~~~~-- 466 (573)
..|+-+|+++|...-.- +.++|||..|......+-.+|... | ..... +.|
T Consensus 1125 SgKmiLLleIL~mceeI-----GDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyr-iDGst 1198 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEI-----GDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYR-LDGST 1198 (1567)
T ss_pred CcceehHHHHHHHHHHh-----cceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEE-ecCcc
Confidence 34677788888765443 459999999998888887777542 1 11111 122
Q ss_pred ---CHHHHHHHHHhcCCCCCeEEEEeccccC--CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCc--ceEEEEeccc
Q 008235 467 ---IVSHIKNSVEADGRKRPAVSMIDKDHIS--TAELEEYEVVIVPDFIISMKNYVEILTSMARHTVS--GILHSFFTKD 539 (573)
Q Consensus 467 ---~~~~~l~~F~~~g~~~~l~~lvd~~s~r--GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~--G~~i~~~~~~ 539 (573)
.|......|..-...+.-+.|| .|-|. ||++-..+.||.||...++.-=+|-+=|+=|.|+. -.+|-|+...
T Consensus 1199 ~s~~R~k~~~~FNdp~NlRaRl~LI-STRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqG 1277 (1567)
T KOG1015|consen 1199 TSQSRKKWAEEFNDPTNLRARLFLI-STRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQG 1277 (1567)
T ss_pred cHHHHHHHHHHhcCcccceeEEEEE-eeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcc
Confidence 4556788883333344444456 33234 99999999999999999988888888899999864 4555566543
No 397
>PRK08506 replicative DNA helicase; Provisional
Probab=84.84 E-value=3.6 Score=44.79 Aligned_cols=35 Identities=11% Similarity=0.050 Sum_probs=22.6
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~ 263 (573)
.=+++.|+|| .||| +|++-++..+.. .+..++|++
T Consensus 193 ~LivIaarpg-~GKT-~fal~ia~~~~~---------~g~~V~~fS 227 (472)
T PRK08506 193 DLIIIAARPS-MGKT-TLCLNMALKALN---------QDKGVAFFS 227 (472)
T ss_pred ceEEEEcCCC-CChH-HHHHHHHHHHHh---------cCCcEEEEe
Confidence 3455668999 9999 566666655542 244566665
No 398
>PRK04195 replication factor C large subunit; Provisional
Probab=84.78 E-value=5.8 Score=43.33 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=21.6
Q ss_pred CccEEEEeCcccccC---cchHHHHHHhcCC-CCcEEEE
Q 008235 330 GVSLLVVDRLDSLSK---GDTLSLIRQSISG-KPHTVVF 364 (573)
Q Consensus 330 ~l~~lViDEad~ll~---~~~l~~Il~~l~~-~~q~l~~ 364 (573)
.-.+|||||||.|.. ...+..++..+.. ...+++.
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli 136 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILT 136 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEe
Confidence 467999999999875 2345555555533 3344443
No 399
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.68 E-value=4.7 Score=44.23 Aligned_cols=27 Identities=11% Similarity=0.320 Sum_probs=18.4
Q ss_pred CCCccEEEEeCcccccCcchHHHHHHhc
Q 008235 328 VSGVSLLVVDRLDSLSKGDTLSLIRQSI 355 (573)
Q Consensus 328 l~~l~~lViDEad~ll~~~~l~~Il~~l 355 (573)
+...++|||||+|.|. ...+..++..+
T Consensus 114 ~~~~kVVIIDEad~ls-~~a~naLLk~L 140 (504)
T PRK14963 114 RGGRKVYILDEAHMMS-KSAFNALLKTL 140 (504)
T ss_pred cCCCeEEEEECccccC-HHHHHHHHHHH
Confidence 3567899999999876 33444455544
No 400
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=84.62 E-value=0.86 Score=51.31 Aligned_cols=49 Identities=27% Similarity=0.171 Sum_probs=39.0
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.++++.|||| ||||..+++|-+- .. +.-++|+=|-.|++..+....+++
T Consensus 225 ~H~Lv~ApTg-sGKt~g~VIPnLL---~~---------~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 225 THGLVFAGSG-GFKTTSVVVPTAL---KW---------GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred ceEEEEeCCC-CCccceEehhhhh---cC---------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 6899999999 9999999999763 21 335788889999988777766554
No 401
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=84.51 E-value=1.8 Score=44.35 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHhcCC-cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHH
Q 008235 204 NSWGIEFWKCYSSAK-DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274 (573)
Q Consensus 204 t~iQ~~aip~il~g~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~ 274 (573)
++-|...+-.+..++ ++|++..|| ||||.. +-++..... ..-++|.+--|.||-.+.-.
T Consensus 159 ~~~~a~~L~~av~~r~NILisGGTG-SGKTTl--LNal~~~i~---------~~eRvItiEDtaELql~~ph 218 (355)
T COG4962 159 IRRAAKFLRRAVGIRCNILISGGTG-SGKTTL--LNALSGFID---------SDERVITIEDTAELQLAHPH 218 (355)
T ss_pred CHHHHHHHHHHHhhceeEEEeCCCC-CCHHHH--HHHHHhcCC---------CcccEEEEeehhhhccCCCc
Confidence 778888888877775 999999999 999953 222221111 23389999999998554433
No 402
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.48 E-value=24 Score=36.14 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=67.8
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc-c-HHHHH-HHHHHHhhhhcCCcEEEEe-CCCCCH
Q 008235 220 ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS-S-QEKAA-KVRSVCKPLKAFGIHTVSL-HPGAAI 295 (573)
Q Consensus 220 vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P-t-reLa~-Qi~~~~~~l~~~~i~~~~~-~gg~~~ 295 (573)
++++.--| +|||.+. .=|.+.+.. .|.++++.+- | |+=|. |+..+.+++ |+.++.- +|+.+.
T Consensus 142 il~vGVNG-~GKTTTI--aKLA~~l~~--------~g~~VllaA~DTFRAaAiEQL~~w~er~---gv~vI~~~~G~DpA 207 (340)
T COG0552 142 ILFVGVNG-VGKTTTI--AKLAKYLKQ--------QGKSVLLAAGDTFRAAAIEQLEVWGERL---GVPVISGKEGADPA 207 (340)
T ss_pred EEEEecCC-CchHhHH--HHHHHHHHH--------CCCeEEEEecchHHHHHHHHHHHHHHHh---CCeEEccCCCCCcH
Confidence 56668899 9999873 233333333 3556665543 3 55443 555555555 6666652 343332
Q ss_pred HHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC----cchHHHHHHhcCCCC-----cEEE-Ee
Q 008235 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKP-----HTVV-FN 365 (573)
Q Consensus 296 ~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~-----q~l~-~S 365 (573)
.-- .|-++.. .-+++++|++|=|-||.. -++|..|.+-+.+.. .+++ +-
T Consensus 208 aVa-------------------fDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlD 266 (340)
T COG0552 208 AVA-------------------FDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLD 266 (340)
T ss_pred HHH-------------------HHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEE
Confidence 111 1112111 123455666666666655 566677766665433 2444 48
Q ss_pred ccCCccHHHHHHHHh
Q 008235 366 DCLTYTSVPAVQNLL 380 (573)
Q Consensus 366 AT~~~~~~~~~~~~l 380 (573)
||..++...-++.|-
T Consensus 267 AttGqnal~QAk~F~ 281 (340)
T COG0552 267 ATTGQNALSQAKIFN 281 (340)
T ss_pred cccChhHHHHHHHHH
Confidence 998887666666553
No 403
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=84.41 E-value=8.7 Score=39.42 Aligned_cols=22 Identities=5% Similarity=-0.002 Sum_probs=18.0
Q ss_pred HHHhcCCcEEEEeCCCchhHHHH
Q 008235 212 KCYSSAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 212 p~il~g~dvl~~A~TG~SGKTla 234 (573)
-.+..++++++..++| +|||..
T Consensus 59 ~~l~~~~~ilL~G~pG-tGKTtl 80 (327)
T TIGR01650 59 AGFAYDRRVMVQGYHG-TGKSTH 80 (327)
T ss_pred HHHhcCCcEEEEeCCC-ChHHHH
Confidence 3345579999999999 999964
No 404
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.21 E-value=2.6 Score=47.22 Aligned_cols=41 Identities=7% Similarity=0.048 Sum_probs=24.1
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccCCc
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTY 370 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~~~ 370 (573)
.+.+++||||+|+|.. ...+.++++..+....+ +|.+|-+.
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~f-IL~Ttd~~ 165 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKF-VLATTDPQ 165 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEE-EEEECCch
Confidence 4678999999998874 44444444443333344 44445443
No 405
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=84.16 E-value=8.9 Score=34.28 Aligned_cols=42 Identities=5% Similarity=0.050 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEeccccCCCccCC--CCEEEeCCCCC
Q 008235 468 VSHIKNSVEADGRKRPAVSMIDKDHISTAELEE--YEVVIVPDFII 511 (573)
Q Consensus 468 ~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~--v~~VI~~d~P~ 511 (573)
....++.|.+.+...++++ +.-. ..|+|+|+ ++.||...+|.
T Consensus 36 ~~~~l~~f~~~~~~~iL~~-~~~~-~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 36 TGKLLEKYVEACENAILLA-TARF-SEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHcCCCEEEEE-ccce-ecceecCCCCeeEEEEEecCC
Confidence 4667888844333355544 2122 25999997 46888888773
No 406
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=84.10 E-value=4.6 Score=39.59 Aligned_cols=17 Identities=18% Similarity=0.020 Sum_probs=15.0
Q ss_pred CcEEEEeCCCchhHHHHH
Q 008235 218 KDILETSGSSSTIVQIAW 235 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (573)
+-++...|.| +|||+..
T Consensus 206 KGvLmYGPPG-TGKTlmA 222 (424)
T KOG0652|consen 206 KGVLMYGPPG-TGKTLMA 222 (424)
T ss_pred CceEeeCCCC-CcHHHHH
Confidence 7899999999 9999753
No 407
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.93 E-value=4.5 Score=42.98 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=23.3
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEecc
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDC 367 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT 367 (573)
+..-+++||||+|.|.. ...+...++..++.. +++|.++
T Consensus 125 ~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t-~~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHA-IFIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCe-EEEEEeC
Confidence 45678999999999874 334444444433333 3444444
No 408
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=83.50 E-value=1.1 Score=50.70 Aligned_cols=49 Identities=8% Similarity=-0.064 Sum_probs=39.0
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.++++.|||| ||||..|++|-|-.. ...+||+=|--||...+...-+++
T Consensus 145 ~hvLviApTr-SGKgvg~VIPnLL~~------------~~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 145 EHVLCFAPTR-SGKGVGLVVPTLLTW------------PGSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred ceEEEEecCC-CCcceeEehhhHHhC------------CCCEEEEeCcchHHHHHHHHHHhC
Confidence 7899999999 999999999987532 235888999999987766655544
No 409
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=83.50 E-value=9.6 Score=39.06 Aligned_cols=55 Identities=5% Similarity=0.172 Sum_probs=34.5
Q ss_pred EEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEe
Q 008235 309 FLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 309 IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
|-|-....+.+.+....+ ....+.+|||+||.|-. ...+.++++.-| +..+++.+
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~ 160 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIA 160 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEE
Confidence 333333445555554443 35789999999999986 666777777655 55444444
No 410
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=83.40 E-value=20 Score=37.57 Aligned_cols=105 Identities=13% Similarity=0.060 Sum_probs=59.5
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCC-CH
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA-AI 295 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~-~~ 295 (573)
.+-+.+..+.| .|||+. +-++........ ..+ ++-.+...++++.+..+. |+. +.
T Consensus 62 ~~GlYl~G~vG-~GKT~L--md~f~~~lp~~~-------k~R----~HFh~Fm~~vh~~l~~~~----------~~~~~l 117 (362)
T PF03969_consen 62 PKGLYLWGPVG-RGKTML--MDLFYDSLPIKR-------KRR----VHFHEFMLDVHSRLHQLR----------GQDDPL 117 (362)
T ss_pred CceEEEECCCC-CchhHH--HHHHHHhCCccc-------ccc----ccccHHHHHHHHHHHHHh----------CCCccH
Confidence 57899999999 999963 333322222111 111 234567777777777663 111 11
Q ss_pred HHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhc-CCCCcEEEEeccCCcc
Q 008235 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSI-SGKPHTVVFNDCLTYT 371 (573)
Q Consensus 296 ~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l-~~~~q~l~~SAT~~~~ 371 (573)
.. +.+.+ .....+|++||.| +.| .--+..+++.+ ..+.-+|..|-+.|.+
T Consensus 118 ~~-------------------va~~l------~~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 118 PQ-------------------VADEL------AKESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred HH-------------------HHHHH------HhcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 11 11112 2446799999998 444 44455555554 4566677777777754
No 411
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=83.27 E-value=1.1 Score=50.12 Aligned_cols=49 Identities=24% Similarity=0.206 Sum_probs=39.0
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.++++.|||| ||||..+++|-+ +.. +--++|+=|.-|++..+...-++.
T Consensus 212 ~H~lv~ApTg-sGKgvg~VIPnL---L~~---------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSG-GFKTTSVVVPTA---LKY---------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCC-CCccceeehhhh---hcC---------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 6899999999 999999999975 222 335899999999988777655555
No 412
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=83.07 E-value=1.1e+02 Score=38.93 Aligned_cols=194 Identities=9% Similarity=0.017 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHhcCCcEEE--EeCCCc--hhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 204 NSWGIEFWKCYSSAKDILE--TSGSSS--TIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~--~A~TG~--SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
+.-|..++..++..++.+. .++-|. +|+++.- +..+... .|..+.+|+||..-+.++.+.
T Consensus 415 ~~~~~~av~~~~q~~~~~~il~g~~G~aG~g~~l~~----l~~~a~~--------~G~~V~glAPt~~a~~~L~~~---- 478 (1747)
T PRK13709 415 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAE----LVMMARE--------QGREVQILAADRRSQMNLKQD---- 478 (1747)
T ss_pred chhhhHHHHHHhcccCcEEEEEcCCcchHHHHHHHH----HHHHHHh--------CCcEEEEEeCcHHHHHHHHHh----
Confidence 3456777777777765433 333331 4443332 2222222 478999999998877555432
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhc-CCC
Q 008235 280 KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI-SGK 358 (573)
Q Consensus 280 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l-~~~ 358 (573)
.++..-.+ ++ . .++... ..+..=.+||||||..|. ..++..++... ..+
T Consensus 479 --~gi~~~Tv----------------------a~-~---~~l~~~-~~~~~~~ilIVDEAg~ls-ar~m~~Ll~~A~~~~ 528 (1747)
T PRK13709 479 --ERLSGELI----------------------TG-R---RQLQEG-MAFTPGSTLIVDQAEKLS-LKETLTLLDGAARHN 528 (1747)
T ss_pred --cCCCccee----------------------eh-h---hhhccc-cCCCCCcEEEEECCCcCC-HHHHHHHHHHHHHhC
Confidence 13321111 11 0 001111 123344699999998655 66777777654 356
Q ss_pred CcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEE
Q 008235 359 PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLY 438 (573)
Q Consensus 359 ~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lI 438 (573)
.|+|++.-|--...-.-...+...-+........ +.+...++...+...+...+..-...+... ...+++|
T Consensus 529 arvVllgd~~Q~aAG~pf~~Lq~aG~~t~~~Q~~-----~~l~a~v~~~~d~~~r~~aiA~~Y~~l~~~----~r~~tli 599 (1747)
T PRK13709 529 VQVLILDSGQRTGTGSALMVLKDAGVNTYRWQGG-----EQRPATVISEPDKNVRYARLAGDFAASVKA----GEESVAQ 599 (1747)
T ss_pred CEEEEECCcccccccCHHHHHHHcCCcEEEEecC-----cccccceeeecCchhHHHHHHHHHHhcCcc----cccceEE
Confidence 7888775332221111111111121222222211 112222333333445554443333332221 2468999
Q ss_pred EecChhhHHHHHHHH
Q 008235 439 IVGKDSKFQNLVSTL 453 (573)
Q Consensus 439 F~~s~~~~~~l~~~L 453 (573)
+..+++ -..|...+
T Consensus 600 v~gt~e-r~~ln~~I 613 (1747)
T PRK13709 600 VSGVRE-QAILTGLI 613 (1747)
T ss_pred EcCchH-HHHHHHHH
Confidence 998865 34444443
No 413
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=82.90 E-value=17 Score=39.11 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=65.9
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEE-EEeCC--------CCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT-VSLHP--------GAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSL 323 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~-~~~~g--------g~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~ 323 (573)
+-++||.+..|+-|.-+.+.+..++ +.+ +.++| |++...|. ..+++|.+++||+|. +-.
T Consensus 366 ~~RvIVFT~yRdTae~i~~~L~~~~---~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTS------VgE 436 (542)
T COG1111 366 DSRVIVFTEYRDTAEEIVNFLKKIG---IKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATS------VGE 436 (542)
T ss_pred CceEEEEehhHhHHHHHHHHHHhcC---CcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcc------ccc
Confidence 5699999999999999998888873 333 34555 56666664 445667899999993 445
Q ss_pred CCCCCCCccEEEEeCcccccCcchHHHHHHhcC
Q 008235 324 KAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS 356 (573)
Q Consensus 324 ~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~ 356 (573)
-.+++..++++|+=|+= ...++.|-+.=+
T Consensus 437 EGLDIp~vDlVifYEpv----pSeIR~IQR~GR 465 (542)
T COG1111 437 EGLDIPEVDLVIFYEPV----PSEIRSIQRKGR 465 (542)
T ss_pred ccCCCCcccEEEEecCC----cHHHHHHHhhCc
Confidence 56889999999998885 777777766543
No 414
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=82.88 E-value=3.6 Score=45.00 Aligned_cols=16 Identities=13% Similarity=0.015 Sum_probs=14.5
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+.+++..|+| +|||+.
T Consensus 217 ~GILLyGPPG-TGKT~L 232 (512)
T TIGR03689 217 KGVLLYGPPG-CGKTLI 232 (512)
T ss_pred cceEEECCCC-CcHHHH
Confidence 6799999999 999975
No 415
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.81 E-value=4.4 Score=41.93 Aligned_cols=71 Identities=17% Similarity=0.349 Sum_probs=52.0
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHH---HhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQIT---GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~---~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
|..+||.|.|..=+..+.-.++.+ |+....++|.++...... .++.+.++|+|||- +..+.++..+++
T Consensus 300 g~s~iVF~~t~~tt~~la~~L~~l---g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TD------VaSRGLDip~Vd 370 (476)
T KOG0330|consen 300 GNSVIVFCNTCNTTRFLALLLRNL---GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTD------VASRGLDIPHVD 370 (476)
T ss_pred CCcEEEEEeccchHHHHHHHHHhc---CcceecccchhhHHHHHHHHHHHhccCCcEEEecc------hhcccCCCCCce
Confidence 567899999887777666666655 899999999988766544 34556799999993 344556777777
Q ss_pred EEE
Q 008235 333 LLV 335 (573)
Q Consensus 333 ~lV 335 (573)
+||
T Consensus 371 ~VV 373 (476)
T KOG0330|consen 371 VVV 373 (476)
T ss_pred EEE
Confidence 665
No 416
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=82.72 E-value=6.5 Score=33.65 Aligned_cols=76 Identities=22% Similarity=0.365 Sum_probs=54.9
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+..+||.+++..-+.++.+.+... +..+..++|+.+.... ...+..+...|+|+|.- + ...+++..+.
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~-----~-~~G~d~~~~~ 98 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKP---GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV-----I-ARGIDLPNVS 98 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhc---CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh-----h-hcCcChhhCC
Confidence 557899999999998888888763 6778889998764333 34455556789999842 2 2346677788
Q ss_pred EEEEeCcc
Q 008235 333 LLVVDRLD 340 (573)
Q Consensus 333 ~lViDEad 340 (573)
++|+...+
T Consensus 99 ~vi~~~~~ 106 (131)
T cd00079 99 VVINYDLP 106 (131)
T ss_pred EEEEeCCC
Confidence 88877774
No 417
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.64 E-value=5.9 Score=44.27 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=25.9
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccCC
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLT 369 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~~ 369 (573)
...+++||||+|.|.. ...+..+++..+...-++ |.+|-+
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fI-l~t~~~ 159 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFI-FATTEP 159 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEE-EEeCCh
Confidence 5678999999998775 555666666544444444 444533
No 418
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.64 E-value=4.7 Score=45.41 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=19.6
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCC
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGK 358 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~ 358 (573)
...+++||||||.|-. ...+...++.-+..
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~ 151 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPR 151 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcC
Confidence 4568999999998864 44455555543333
No 419
>PRK08939 primosomal protein DnaI; Reviewed
Probab=82.64 E-value=10 Score=38.73 Aligned_cols=17 Identities=6% Similarity=-0.160 Sum_probs=14.7
Q ss_pred CCcEEEEeCCCchhHHHH
Q 008235 217 AKDILETSGSSSTIVQIA 234 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (573)
++.+++..++| +|||..
T Consensus 156 ~~gl~L~G~~G-~GKThL 172 (306)
T PRK08939 156 VKGLYLYGDFG-VGKSYL 172 (306)
T ss_pred CCeEEEECCCC-CCHHHH
Confidence 46899999999 999854
No 420
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.63 E-value=4.8 Score=45.00 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=23.8
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccCCc
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTY 370 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~~~ 370 (573)
...++|||||||.|.. ...|..+++..+ ..-+++|.+|-+.
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~-~~~ifILaTt~~~ 160 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPP-ARVTFVLATTEPH 160 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccC-CCEEEEEecCChh
Confidence 4568999999998864 334444444322 3334455555443
No 421
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=82.44 E-value=9.3 Score=44.07 Aligned_cols=31 Identities=6% Similarity=-0.219 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHhc--CCcEEEEeCCCchhHHHHH
Q 008235 204 NSWGIEFWKCYSS--AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 204 t~iQ~~aip~il~--g~dvl~~A~TG~SGKTlaf 235 (573)
.+.=.+.+..+.. ..+++++.|+| +|||...
T Consensus 192 ~~ei~~~i~iL~r~~~~n~LLvGppG-vGKT~la 224 (758)
T PRK11034 192 EKELERAIQVLCRRRKNNPLLVGESG-VGKTAIA 224 (758)
T ss_pred CHHHHHHHHHHhccCCCCeEEECCCC-CCHHHHH
Confidence 3444444444444 36999999999 9999753
No 422
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=82.43 E-value=3.4 Score=50.04 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=55.4
Q ss_pred CcEEEEEcccH---HHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCC-c
Q 008235 256 GPFLLFLVSSQ---EKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSG-V 331 (573)
Q Consensus 256 ~~~~Lil~Ptr---eLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~-l 331 (573)
+..+||.|+|+ +-|..+.+.+... |+++..++|+... .....++++..+|||||.. ..+.+. ..+++.+ +
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~~---g~~a~~lhg~~~~-~~l~~Fr~G~~~vLVata~-~tdv~a-RGIDip~~V 399 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLENH---GVKAVAYHATKPK-EDYEKFAEGEIDVLIGVAS-YYGTLV-RGLDLPERV 399 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHhC---CceEEEEeCCCCH-HHHHHHHcCCCCEEEEecc-ccCccc-ccCCCCccc
Confidence 45789999999 8888887777654 8999999999863 5567888888999999731 012222 3467777 7
Q ss_pred cEEEE
Q 008235 332 SLLVV 336 (573)
Q Consensus 332 ~~lVi 336 (573)
+++|.
T Consensus 400 ~~vI~ 404 (1171)
T TIGR01054 400 RYAVF 404 (1171)
T ss_pred cEEEE
Confidence 88887
No 423
>PRK04328 hypothetical protein; Provisional
Probab=82.41 E-value=6.1 Score=39.03 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=32.2
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.|.-+++.+++| +|||.-.+--+.+.+. .|-.++|++ +.|-..++.+.+..+
T Consensus 22 ~gs~ili~G~pG-sGKT~l~~~fl~~~~~----------~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPG-TGKSIFSQQFLWNGLQ----------MGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCC-CCHHHHHHHHHHHHHh----------cCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 467788899999 9998543222333222 244567766 555556666666665
No 424
>PRK13767 ATP-dependent helicase; Provisional
Probab=82.36 E-value=8.2 Score=45.52 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=63.8
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhh-hc--CCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCC
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPL-KA--FGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVS 329 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l-~~--~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~ 329 (573)
+..+||.|+||..|..++..+... .. .+..+.+.+|+.+.... ...++++...|||||.- +.. .+++.
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-----Le~-GIDip 357 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-----LEL-GIDIG 357 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----HHh-cCCCC
Confidence 456999999999999999888774 21 25678889999886543 35567778999999952 333 47888
Q ss_pred CccEEEEeCcccccCcchHHHHHHhc
Q 008235 330 GVSLLVVDRLDSLSKGDTLSLIRQSI 355 (573)
Q Consensus 330 ~l~~lViDEad~ll~~~~l~~Il~~l 355 (573)
.+++||.-.. ...+...++.+
T Consensus 358 ~Vd~VI~~~~-----P~sv~~ylQRi 378 (876)
T PRK13767 358 YIDLVVLLGS-----PKSVSRLLQRI 378 (876)
T ss_pred CCcEEEEeCC-----CCCHHHHHHhc
Confidence 8999886433 44555555555
No 425
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=82.30 E-value=4.3 Score=44.62 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=27.0
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEe
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
....+++||||||.|-. ...+..++...++...+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 35678999999998875 556666666656666555554
No 426
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=82.27 E-value=16 Score=39.61 Aligned_cols=115 Identities=21% Similarity=0.211 Sum_probs=83.8
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHH---HHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID---HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~---~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
.+-++||.+=|.-+|..+.+.+..+ |+++..++++...- +-++.|+.|.+|||||- .+|+.+ +++..|
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~---gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLLREG-LDiPEV 515 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKEL---GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLREG-LDLPEV 515 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhc---CceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhhhcc-CCCcce
Confidence 3679999999999998888877766 99999999987643 34577788889999995 455554 789999
Q ss_pred cEEEEeCcccccC---cchHHHHHHh-c-CCCCcEEEEeccCCccHHHHHHH
Q 008235 332 SLLVVDRLDSLSK---GDTLSLIRQS-I-SGKPHTVVFNDCLTYTSVPAVQN 378 (573)
Q Consensus 332 ~~lViDEad~ll~---~~~l~~Il~~-l-~~~~q~l~~SAT~~~~~~~~~~~ 378 (573)
.+|.|=.||.=.- ...+-+++.. . +.+-.+++..-.++..++..+..
T Consensus 516 sLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai~E 567 (663)
T COG0556 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDE 567 (663)
T ss_pred eEEEEeecCccccccccchHHHHHHHHhhccCCeEEEEchhhhHHHHHHHHH
Confidence 9999999996322 3333333333 2 34567888888888776655443
No 427
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=82.24 E-value=2.2 Score=43.31 Aligned_cols=16 Identities=6% Similarity=-0.137 Sum_probs=13.8
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
..+++..|.| +|||..
T Consensus 31 ~~~ll~Gp~G-~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPG-LGKTTL 46 (305)
T ss_pred CeEEEECCCC-CCHHHH
Confidence 5689999999 999954
No 428
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.20 E-value=5.7 Score=43.15 Aligned_cols=27 Identities=11% Similarity=0.377 Sum_probs=17.6
Q ss_pred CCCccEEEEeCcccccCcchHHHHHHhc
Q 008235 328 VSGVSLLVVDRLDSLSKGDTLSLIRQSI 355 (573)
Q Consensus 328 l~~l~~lViDEad~ll~~~~l~~Il~~l 355 (573)
+...++|||||+|+|.. ..+..++..+
T Consensus 115 ~~~~kVvIIDE~h~Lt~-~a~~~LLk~L 141 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTK-EAFNALLKTL 141 (472)
T ss_pred cCCeEEEEEEChHHhHH-HHHHHHHHHH
Confidence 35678999999998864 2333444443
No 429
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=82.18 E-value=9.6 Score=37.87 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=29.3
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc---cHHHHHHHHHHHhh
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS---SQEKAAKVRSVCKP 278 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P---treLa~Qi~~~~~~ 278 (573)
.|.=+++..++| +|||.. .+-++..... .|-.++|++- ...+..++...+..
T Consensus 35 ~gs~~lI~G~pG-tGKT~l-~~qf~~~~a~---------~Ge~vlyis~Ee~~~~~~~~l~~~a~~ 89 (259)
T TIGR03878 35 AYSVINITGVSD-TGKSLM-VEQFAVTQAS---------RGNPVLFVTVESPANFVYTSLKERAKA 89 (259)
T ss_pred CCcEEEEEcCCC-CCHHHH-HHHHHHHHHh---------CCCcEEEEEecCCchHHHHHHHHHHHH
Confidence 456788889999 999964 3333322221 2556777772 23344444443333
No 430
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.09 E-value=18 Score=39.75 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=47.1
Q ss_pred HHHHHHHhhhhcCCcEEEEeCCCCCH-----HHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC
Q 008235 270 AKVRSVCKPLKAFGIHTVSLHPGAAI-----DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (573)
Q Consensus 270 ~Qi~~~~~~l~~~~i~~~~~~gg~~~-----~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~ 344 (573)
.++.+.+.++- .+.++..+++.+.. ......+.++.++|||||+. + .+.+++.++.+++|=.||..+.
T Consensus 272 e~~~e~l~~~f-p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~-----i-~kG~d~~~v~lV~vl~aD~~l~ 344 (505)
T TIGR00595 272 EQVEEELAKLF-PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQM-----I-AKGHHFPNVTLVGVLDADSGLH 344 (505)
T ss_pred HHHHHHHHhhC-CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcc-----c-ccCCCCCcccEEEEEcCccccc
Confidence 44445554431 15677777776542 34456777778999999973 3 3457899999999999998776
No 431
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=82.05 E-value=4.4 Score=44.38 Aligned_cols=76 Identities=11% Similarity=-0.079 Sum_probs=49.6
Q ss_pred HHHHHHHHHhc--CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCC
Q 008235 206 WGIEFWKCYSS--AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG 283 (573)
Q Consensus 206 iQ~~aip~il~--g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~ 283 (573)
||.+==..|-. ++=++|+...| ||||.+.+--+...++..+... .+..+|||.|.+-+..=+.+++-.|+..|
T Consensus 213 IQkEQneIIR~ek~~ilVVQGaAG-SGKTtiALHRvAyLlY~~R~~l----~~k~vlvl~PN~vFleYis~VLPeLGe~~ 287 (747)
T COG3973 213 IQKEQNEIIRFEKNKILVVQGAAG-SGKTTIALHRVAYLLYGYRGPL----QAKPVLVLGPNRVFLEYISRVLPELGEEG 287 (747)
T ss_pred hhHhHHHHHhccCCCeEEEecCCC-CCchhHHHHHHHHHHhcccccc----ccCceEEEcCcHHHHHHHHHhchhhccCc
Confidence 45554444444 35577889999 9999876544333334332111 22349999999999999999988886555
Q ss_pred cEE
Q 008235 284 IHT 286 (573)
Q Consensus 284 i~~ 286 (573)
+..
T Consensus 288 V~q 290 (747)
T COG3973 288 VVQ 290 (747)
T ss_pred eee
Confidence 543
No 432
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.04 E-value=5.3 Score=44.15 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=25.3
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEe
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
...+++||||||+|-. ...+..+++..+....+++.+
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 4668999999999875 555666666655555555443
No 433
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=82.03 E-value=1.1 Score=54.52 Aligned_cols=90 Identities=8% Similarity=-0.058 Sum_probs=64.1
Q ss_pred cEEEEecChhhHHHHHHHHHHCCCCeeeecCC----------------CHHHHHHHHHhcCCCCCeEEEEeccccCCCcc
Q 008235 435 KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC----------------IVSHIKNSVEADGRKRPAVSMIDKDHISTAEL 498 (573)
Q Consensus 435 k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~----------------~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDi 498 (573)
-.|+||+....+..+.+.++.....-..+.-| ...+++..| ..-..+.+.. +.+. ..|+|+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~-~~~~ln~L~~-~~~~-~e~~d~ 370 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRF-HFHELNLLIA-TSVL-EEGVDV 370 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHH-hhhhhhHHHH-HHHH-Hhhcch
Confidence 56999999999999998887753221100111 234578888 5555555433 1122 249999
Q ss_pred CCCCEEEeCCCCCCHHHHHHHHhccccCC
Q 008235 499 EEYEVVIVPDFIISMKNYVEILTSMARHT 527 (573)
Q Consensus 499 p~v~~VI~~d~P~s~~~YiqR~GR~gR~g 527 (573)
+.++.|+.++.|.....|+|+.||+-+..
T Consensus 371 ~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 371 PKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhhhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999999987664
No 434
>PF12846 AAA_10: AAA-like domain
Probab=81.55 E-value=2.7 Score=42.18 Aligned_cols=42 Identities=10% Similarity=0.054 Sum_probs=32.0
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHH
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAA 270 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~ 270 (573)
.+++++++|| ||||.... .++..+.. .+..++|+=|..+...
T Consensus 2 ~h~~i~G~tG-sGKT~~~~-~l~~~~~~---------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTG-SGKTTLLK-NLLEQLIR---------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCC-CcHHHHHH-HHHHHHHH---------cCCCEEEEcCCchHHH
Confidence 5789999999 99997655 55555554 3778889988877665
No 435
>PRK06321 replicative DNA helicase; Provisional
Probab=81.35 E-value=4.8 Score=43.73 Aligned_cols=33 Identities=6% Similarity=-0.049 Sum_probs=20.9
Q ss_pred HHHHHhcC---CcE-EEEeCCCchhHHHHHHHHHHHHHH
Q 008235 210 FWKCYSSA---KDI-LETSGSSSTIVQIAWIVATAADSI 244 (573)
Q Consensus 210 aip~il~g---~dv-l~~A~TG~SGKTlaf~lp~l~~l~ 244 (573)
.+..+..| .++ ++.|.+| .||| +|++-+...+.
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPg-mGKT-afal~ia~~~a 251 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPA-MGKT-ALALNIAENFC 251 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCC-CChH-HHHHHHHHHHH
Confidence 34444444 455 5568999 9999 56666665554
No 436
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.31 E-value=16 Score=41.83 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=35.9
Q ss_pred CccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCc
Q 008235 330 GVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTY 370 (573)
Q Consensus 330 ~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~ 370 (573)
+--+||+|..|.+-+ ...++.+++..|++.+.++.|-+-|+
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 345999999999998 88899999999999999999887664
No 437
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=81.30 E-value=4.7 Score=39.26 Aligned_cols=52 Identities=8% Similarity=-0.052 Sum_probs=29.8
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.|.-+++.+++| +|||.-...-+...+. .+-.++|+.=- +-..++.+.+..+
T Consensus 24 ~g~~~~i~G~~G-sGKt~l~~~~~~~~~~----------~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHG-TGKSVLSQQFVYGALK----------QGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCC-CChHHHHHHHHHHHHh----------CCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 356788889999 9999643322222221 25567777643 3334555555554
No 438
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=81.12 E-value=3.4 Score=46.98 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=23.9
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccCC
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLT 369 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~~ 369 (573)
..-+++||||||.|-. ...+...+...|... +++|.+|-+
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~t-ifILaTte~ 158 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHV-IFILATTEV 158 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCce-EEEEEcCCh
Confidence 5678999999998764 444444444433333 344444533
No 439
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=81.02 E-value=6.8 Score=45.25 Aligned_cols=89 Identities=21% Similarity=0.270 Sum_probs=64.2
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhh-h----cCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCC
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPL-K----AFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAID 327 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l-~----~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~ 327 (573)
+.++||.|+||..|..++..++.+ . .++.++..++||....+. .+.++++...+||+|. .+.. .++
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd-----~ler-GID 344 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTN-----ALEL-GVD 344 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECc-----hHhc-cCC
Confidence 568999999999999999888764 2 135677888999886543 3456677799999993 3433 478
Q ss_pred CCCccEEEEeCcccccCcchHHHHHHhc
Q 008235 328 VSGVSLLVVDRLDSLSKGDTLSLIRQSI 355 (573)
Q Consensus 328 l~~l~~lViDEad~ll~~~~l~~Il~~l 355 (573)
+.+++++|.-.. ...+...++++
T Consensus 345 I~~vd~VI~~~~-----P~s~~~y~qRi 367 (742)
T TIGR03817 345 ISGLDAVVIAGF-----PGTRASLWQQA 367 (742)
T ss_pred cccccEEEEeCC-----CCCHHHHHHhc
Confidence 888998887654 34455555554
No 440
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=80.79 E-value=3.5 Score=41.58 Aligned_cols=19 Identities=5% Similarity=-0.163 Sum_probs=15.2
Q ss_pred cCCcEEEEeCCCchhHHHHH
Q 008235 216 SAKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf 235 (573)
.++-++++.||| +|||...
T Consensus 193 ~~~vi~~vGptG-vGKTTt~ 211 (282)
T TIGR03499 193 QGGVIALVGPTG-VGKTTTL 211 (282)
T ss_pred CCeEEEEECCCC-CCHHHHH
Confidence 346788889999 9999764
No 441
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=80.74 E-value=27 Score=39.16 Aligned_cols=101 Identities=16% Similarity=0.235 Sum_probs=69.4
Q ss_pred CCcEEEEEcccHHH--------HHHHHHHHhhhhcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHc
Q 008235 255 TGPFLLFLVSSQEK--------AAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSL 323 (573)
Q Consensus 255 ~~~~~Lil~PtreL--------a~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~ 323 (573)
.|-++.||||..|= |..+++.++.+ ..+.++..++|-+...+. ...++.+..+|+|+|. +-.
T Consensus 472 ~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~-~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT------VIE 544 (677)
T COG1200 472 KGRQAYVVCPLIEESEKLELQAAEELYEELKSF-LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT------VIE 544 (677)
T ss_pred cCCEEEEEeccccccccchhhhHHHHHHHHHHH-cccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEee------EEE
Confidence 46799999996542 33333333321 127889999998875443 3556667899999994 222
Q ss_pred CCCCCCCccEEEEeCcccccCcchHHHHHHhcC-CCCcEEE
Q 008235 324 KAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS-GKPHTVV 363 (573)
Q Consensus 324 ~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~-~~~q~l~ 363 (573)
=.++..+-.++||..|+|+. ..++.++..+.. ...|-.+
T Consensus 545 VGVdVPnATvMVIe~AERFG-LaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 545 VGVDVPNATVMVIENAERFG-LAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred ecccCCCCeEEEEechhhhh-HHHHHHhccccCCCCcceEE
Confidence 34678899999999999987 788888877774 3344433
No 442
>PRK05595 replicative DNA helicase; Provisional
Probab=80.63 E-value=13 Score=40.17 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHhcC---CcE-EEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc
Q 008235 204 NSWGIEFWKCYSSA---KDI-LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS 264 (573)
Q Consensus 204 t~iQ~~aip~il~g---~dv-l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P 264 (573)
|.|+ .+..+..| .++ ++.|+|| .||| +|++-+..++... .|..++|++.
T Consensus 186 tg~~--~ld~~~~G~~~g~liviaarpg-~GKT-~~al~ia~~~a~~--------~g~~vl~fSl 238 (444)
T PRK05595 186 SGFR--ELDAKTSGFQKGDMILIAARPS-MGKT-TFALNIAEYAALR--------EGKSVAIFSL 238 (444)
T ss_pred CChH--HHHHhcCCCCCCcEEEEEecCC-CChH-HHHHHHHHHHHHH--------cCCcEEEEec
Confidence 4443 33444444 455 5568999 9999 5666666554322 2556777754
No 443
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=80.50 E-value=6.9 Score=41.19 Aligned_cols=20 Identities=5% Similarity=-0.119 Sum_probs=17.1
Q ss_pred HHhcCCcEEEEeCCCchhHHH
Q 008235 213 CYSSAKDILETSGSSSTIVQI 233 (573)
Q Consensus 213 ~il~g~dvl~~A~TG~SGKTl 233 (573)
++-.|.-.++.+|.| +|||.
T Consensus 165 PIGkGQR~lIvgppG-vGKTT 184 (416)
T PRK09376 165 PIGKGQRGLIVAPPK-AGKTV 184 (416)
T ss_pred ccccCceEEEeCCCC-CChhH
Confidence 355788899999999 99995
No 444
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=80.50 E-value=1 Score=41.77 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=27.0
Q ss_pred HHhhcCCCcEEEeCHHHHHHHHHcCC---CCCCCccEEEEeCcccccC
Q 008235 300 TGLRSCEPEFLVSTPERLLKLVSLKA---IDVSGVSLLVVDRLDSLSK 344 (573)
Q Consensus 300 ~~l~~~~~~IlV~TP~rL~~~l~~~~---~~l~~l~~lViDEad~ll~ 344 (573)
+.+.. .+||||++-.-|++-..... +.+ .-.+|||||||.|.+
T Consensus 114 r~~~~-~adivi~~y~yl~~~~~~~~~~~~~~-~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAK-NADIVICNYNYLFDPSIRKSLFGIDL-KDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGG-G-SEEEEETHHHHSHHHHHHHCT--C-CCEEEEETTGGGCGG
T ss_pred HHhcc-cCCEEEeCHHHHhhHHHHhhhccccc-cCcEEEEecccchHH
Confidence 33334 68999999777765433222 223 346999999999865
No 445
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.42 E-value=1.7 Score=44.56 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=36.6
Q ss_pred CHHHHH-HHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHH
Q 008235 204 NSWGIE-FWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (573)
Q Consensus 204 t~iQ~~-aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa 269 (573)
++.|.. .|-++-.+++++++.+|| ||||. ++.+++..+-. .-+.+.+--|.|+.
T Consensus 129 ~~~~~ayL~~~ie~~~siii~G~t~-sGKTt-~lnall~~Ip~----------~~rivtIEdt~E~~ 183 (312)
T COG0630 129 SPEQAAYLWLAIEARKSIIICGGTA-SGKTT-LLNALLDFIPP----------EERIVTIEDTPELK 183 (312)
T ss_pred CHHHHHHHHHHHHcCCcEEEECCCC-CCHHH-HHHHHHHhCCc----------hhcEEEEecccccc
Confidence 445555 456667789999999999 99995 35555544432 33567777776664
No 446
>PRK09401 reverse gyrase; Reviewed
Probab=80.42 E-value=3.8 Score=49.60 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=52.6
Q ss_pred CcEEEEEcccHHH---HHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCC-c
Q 008235 256 GPFLLFLVSSQEK---AAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSG-V 331 (573)
Q Consensus 256 ~~~~Lil~PtreL---a~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~-l 331 (573)
+..+||.|||+.- |..+.+.+... |+++..++|+. ......++++.++|||||... .+.+ ...+++.+ +
T Consensus 328 ~~~~LIFv~t~~~~~~ae~l~~~L~~~---gi~v~~~hg~l--~~~l~~F~~G~~~VLVatas~-tdv~-aRGIDiP~~I 400 (1176)
T PRK09401 328 GDGGLIFVPSDKGKEYAEELAEYLEDL---GINAELAISGF--ERKFEKFEEGEVDVLVGVASY-YGVL-VRGIDLPERI 400 (1176)
T ss_pred CCCEEEEEecccChHHHHHHHHHHHHC---CCcEEEEeCcH--HHHHHHHHCCCCCEEEEecCC-CCce-eecCCCCcce
Confidence 4579999998554 77666666554 89999999998 455688888889999997310 0122 23467776 7
Q ss_pred cEEEE
Q 008235 332 SLLVV 336 (573)
Q Consensus 332 ~~lVi 336 (573)
+++|.
T Consensus 401 ryVI~ 405 (1176)
T PRK09401 401 RYAIF 405 (1176)
T ss_pred eEEEE
Confidence 88876
No 447
>PRK10436 hypothetical protein; Provisional
Probab=80.40 E-value=8.3 Score=41.76 Aligned_cols=39 Identities=8% Similarity=-0.058 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHhcC--CcEEEEeCCCchhHHHHHHHHHHHHHH
Q 008235 204 NSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSI 244 (573)
Q Consensus 204 t~iQ~~aip~il~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~ 244 (573)
.+-|.+.|..++.. .-++++.||| ||||... ..++..+.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTG-SGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTG-SGKTVTL-YSALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCC-CChHHHH-HHHHHhhC
Confidence 45566666665543 4578889999 9999753 44566553
No 448
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=80.39 E-value=6.7 Score=41.63 Aligned_cols=24 Identities=8% Similarity=0.012 Sum_probs=20.1
Q ss_pred HHHhcCCcEEEEeCCCchhHHHHHH
Q 008235 212 KCYSSAKDILETSGSSSTIVQIAWI 236 (573)
Q Consensus 212 p~il~g~dvl~~A~TG~SGKTlaf~ 236 (573)
|-+-++.|++..+|+| +|||-.|.
T Consensus 204 ~fve~~~Nli~lGp~G-TGKThla~ 227 (449)
T TIGR02688 204 PLVEPNYNLIELGPKG-TGKSYIYN 227 (449)
T ss_pred HHHhcCCcEEEECCCC-CCHHHHHH
Confidence 5666789999999999 99996654
No 449
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=80.17 E-value=13 Score=42.62 Aligned_cols=41 Identities=7% Similarity=0.128 Sum_probs=25.3
Q ss_pred CccEEEEeCcccccCcchHHHHHHhcCCCCcEEEEeccCCccH
Q 008235 330 GVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTS 372 (573)
Q Consensus 330 ~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~l~~SAT~~~~~ 372 (573)
+..+|||||+|++.. .+-..++..+. +.++++++||-++..
T Consensus 109 ~~~IL~IDEIh~Ln~-~qQdaLL~~lE-~g~IiLI~aTTenp~ 149 (725)
T PRK13341 109 KRTILFIDEVHRFNK-AQQDALLPWVE-NGTITLIGATTENPY 149 (725)
T ss_pred CceEEEEeChhhCCH-HHHHHHHHHhc-CceEEEEEecCCChH
Confidence 456899999998864 22233333333 456777777755433
No 450
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=80.15 E-value=5.6 Score=44.12 Aligned_cols=134 Identities=13% Similarity=0.056 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHhcC------C-cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHH
Q 008235 204 NSWGIEFWKCYSSA------K-DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (573)
Q Consensus 204 t~iQ~~aip~il~g------~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~ 276 (573)
|--|..|+-.++.+ + -+-+.|.-| -||+.|..|.+...+... -..+.|-+|+-|=..-+++.+
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RG-RGKSAALGlsiA~AVa~G---------ysnIyvtSPspeNlkTlFeFv 324 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRG-RGKSAALGLSIAGAVAFG---------YSNIYVTSPSPENLKTLFEFV 324 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCC-CCchhhhhHHHHHHHhcC---------cceEEEcCCChHHHHHHHHHH
Confidence 66788887655432 3 345668999 999999998887766532 335677789887666555532
Q ss_pred -hhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHH-----------------cCCCCCCCccEEEEeC
Q 008235 277 -KPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVS-----------------LKAIDVSGVSLLVVDR 338 (573)
Q Consensus 277 -~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~-----------------~~~~~l~~l~~lViDE 338 (573)
+-|-.++..-.. .++||-.|..-+...+. .....+....+|||||
T Consensus 325 ~kGfDaL~Yqeh~-----------------Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~D~~kl~q~eLlVIDE 387 (1011)
T KOG2036|consen 325 FKGFDALEYQEHV-----------------DYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPHDHQKLGQAELLVIDE 387 (1011)
T ss_pred Hcchhhhcchhhc-----------------chhhhhhcChhhhhhEEEEEEeccccceeEeeccchhhhccCCcEEEech
Confidence 223221111000 12222222221111110 1123467889999999
Q ss_pred cccccCcchHHHHHHhcCCCCcEEEEeccCCc
Q 008235 339 LDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY 370 (573)
Q Consensus 339 ad~ll~~~~l~~Il~~l~~~~q~l~~SAT~~~ 370 (573)
|-.+. .+.+..++ .+-+++++.|++.
T Consensus 388 AAAIP-Lplvk~Li-----gPylVfmaSTinG 413 (1011)
T KOG2036|consen 388 AAAIP-LPLVKKLI-----GPYLVFMASTING 413 (1011)
T ss_pred hhcCC-HHHHHHhh-----cceeEEEeecccc
Confidence 98765 55555544 3557888888763
No 451
>PHA02653 RNA helicase NPH-II; Provisional
Probab=80.08 E-value=5.6 Score=45.16 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=54.0
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH-HHHh-hcCCCcEEEeCHHHHHHHHHcCCCCCCCccE
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ-ITGL-RSCEPEFLVSTPERLLKLVSLKAIDVSGVSL 333 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~-~~~l-~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~ 333 (573)
+..+||.+|+++-+..+.+.+.... .++.+..++|+.+..++ ...+ +.+...|||||. +....+++.++.+
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~-~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATd------IAERGIDIp~V~~ 467 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRL-PIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTP------YLESSVTIRNATH 467 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhc-CCceEEeccCCcCHHHHHHHHHhccCceeEEeccC------hhhccccccCeeE
Confidence 4479999999998777777665532 26889999999886544 3555 455689999994 4455688999988
Q ss_pred EE
Q 008235 334 LV 335 (573)
Q Consensus 334 lV 335 (573)
||
T Consensus 468 VI 469 (675)
T PHA02653 468 VY 469 (675)
T ss_pred EE
Confidence 76
No 452
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=79.94 E-value=8.3 Score=40.14 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=18.7
Q ss_pred HHHHhcC-----CcEEEEeCCCchhHHHH
Q 008235 211 WKCYSSA-----KDILETSGSSSTIVQIA 234 (573)
Q Consensus 211 ip~il~g-----~dvl~~A~TG~SGKTla 234 (573)
+|.+..| +-||...|.| ||||+.
T Consensus 234 mPe~F~GirrPWkgvLm~GPPG-TGKTlL 261 (491)
T KOG0738|consen 234 MPEFFKGIRRPWKGVLMVGPPG-TGKTLL 261 (491)
T ss_pred hHHHHhhcccccceeeeeCCCC-CcHHHH
Confidence 4556666 7899999999 999974
No 453
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=79.74 E-value=8 Score=42.22 Aligned_cols=38 Identities=11% Similarity=0.002 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHhcC-Cc-EEEEeCCCchhHHHHHHHHHHHHH
Q 008235 204 NSWGIEFWKCYSSA-KD-ILETSGSSSTIVQIAWIVATAADS 243 (573)
Q Consensus 204 t~iQ~~aip~il~g-~d-vl~~A~TG~SGKTlaf~lp~l~~l 243 (573)
++-|.+.+..++.. +- ++++.||| ||||.. +-.++..+
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptG-SGKTTt-L~a~L~~l 266 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTG-SGKTTT-LYAALSRL 266 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCC-CCHHHH-HHHHHhcc
Confidence 55677777666654 33 67889999 999965 33345544
No 454
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=79.60 E-value=10 Score=37.99 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=21.3
Q ss_pred cChhhHHHHHHHHHHCCCCeeeecCCCH
Q 008235 441 GKDSKFQNLVSTLKCKGYSISTGSNCIV 468 (573)
Q Consensus 441 ~s~~~~~~l~~~L~~~g~~~~~~~~~~~ 468 (573)
.|..-|+.|++.|+..|+.+.. .|-++
T Consensus 255 RSV~iae~La~~L~~~~~~v~v-~HRdl 281 (284)
T PF03668_consen 255 RSVAIAERLAERLREKGYTVVV-RHRDL 281 (284)
T ss_pred cHHHHHHHHHHHHHhcCCcceE-EcCCC
Confidence 4567899999999999998874 56543
No 455
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=79.50 E-value=1.5 Score=46.74 Aligned_cols=52 Identities=13% Similarity=0.008 Sum_probs=35.8
Q ss_pred HHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHH
Q 008235 211 WKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (573)
Q Consensus 211 ip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~ 273 (573)
+|.-...+++++.++|| ||||.. +..++..+... +..++|+=|..++....+
T Consensus 36 ~~~~~~~~h~~i~g~tG-sGKt~~-i~~l~~~~~~~---------~~~~vi~D~kg~~~~~~~ 87 (410)
T cd01127 36 FPKDAEEAHTMIIGTTG-TGKTTQ-IRELLASIRAR---------GDRAIIYDPNGGFVSKFY 87 (410)
T ss_pred CCcchhhccEEEEcCCC-CCHHHH-HHHHHHHHHhc---------CCCEEEEeCCcchhHhhc
Confidence 34444568999999999 999975 44455554432 457888888888765443
No 456
>PRK06620 hypothetical protein; Validated
Probab=79.33 E-value=11 Score=36.36 Aligned_cols=108 Identities=7% Similarity=-0.008 Sum_probs=58.1
Q ss_pred CcEEEEEcccHHHHHHHHHHHhh-hhcCC-cEEEEeCCCC--CHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFG-IHTVSLHPGA--AIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~-l~~~~-i~~~~~~gg~--~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
++--.|+.+..++|......+.. ..... .....++|.. ...+-...+.. .+...+.+.....+ ..+.+.
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~-~~~~~~~~~~~~~~------~~~~~~ 86 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQN-LSNAYIIKDIFFNE------EILEKY 86 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHh-ccCCEEcchhhhch------hHHhcC
Confidence 45568888977777665554443 21111 1446778744 44444444444 34444444332211 113456
Q ss_pred cEEEEeCcccccCcchHHHHHHhcCC-CCcEEEEeccCCcc
Q 008235 332 SLLVVDRLDSLSKGDTLSLIRQSISG-KPHTVVFNDCLTYT 371 (573)
Q Consensus 332 ~~lViDEad~ll~~~~l~~Il~~l~~-~~q~l~~SAT~~~~ 371 (573)
++|+|||+|.+- ...+..+++.+.. +.|+++.|.|.|..
T Consensus 87 d~lliDdi~~~~-~~~lf~l~N~~~e~g~~ilits~~~p~~ 126 (214)
T PRK06620 87 NAFIIEDIENWQ-EPALLHIFNIINEKQKYLLLTSSDKSRN 126 (214)
T ss_pred CEEEEeccccch-HHHHHHHHHHHHhcCCEEEEEcCCCccc
Confidence 789999999653 3456666666643 34555555455543
No 457
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=79.01 E-value=6.8 Score=39.26 Aligned_cols=107 Identities=15% Similarity=0.040 Sum_probs=58.0
Q ss_pred HHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHH---HHHHHhhhhcCCcEEEE
Q 008235 212 KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAK---VRSVCKPLKAFGIHTVS 288 (573)
Q Consensus 212 p~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Q---i~~~~~~l~~~~i~~~~ 288 (573)
|+-..|+-+++.+..| .|||-+- .+... ..|.++++-|...-..- ......
T Consensus 89 ~A~k~g~l~~vyg~~g-~gKt~a~----~~y~~----------s~p~~~l~~~~p~~~a~~~i~~i~~~----------- 142 (297)
T COG2842 89 PASKTGSLVVVYGYAG-LGKTQAA----KNYAP----------SNPNALLIEADPSYTALVLILIICAA----------- 142 (297)
T ss_pred hhhhcCceEEEecccc-chhHHHH----Hhhcc----------cCccceeecCChhhHHHHHHHHHHHH-----------
Confidence 4445678677778999 9999763 22221 46778888876653321 111111
Q ss_pred eCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC-CCCCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEe
Q 008235 289 LHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA-IDVSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 289 ~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~-~~l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
.+++|-+.+.+...+-. .....++++++|||++|.- .+.++.+... ..+.+.+.
T Consensus 143 --------------------~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~---~Gi~~vLv 199 (297)
T COG2842 143 --------------------AFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK---TGIGVVLV 199 (297)
T ss_pred --------------------HhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh---hCceEEEe
Confidence 11222222222211100 0156688999999999984 5555555444 34555555
Q ss_pred cc
Q 008235 366 DC 367 (573)
Q Consensus 366 AT 367 (573)
.+
T Consensus 200 G~ 201 (297)
T COG2842 200 GM 201 (297)
T ss_pred cC
Confidence 54
No 458
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=78.94 E-value=8.8 Score=40.50 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=80.1
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCH
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAI 295 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~ 295 (573)
.|..|++..+|| +||++... .++.+.... ..+|.+-|=|- +++ +......-+|..-+.+.|...
T Consensus 100 ~~~~vLi~GetG-tGKel~A~--~iH~~s~r~------~~~PFI~~NCa--~~~----en~~~~eLFG~~kGaftGa~~- 163 (403)
T COG1221 100 SGLPVLIIGETG-TGKELFAR--LIHALSARR------AEAPFIAFNCA--AYS----ENLQEAELFGHEKGAFTGAQG- 163 (403)
T ss_pred CCCcEEEecCCC-ccHHHHHH--HHHHhhhcc------cCCCEEEEEHH--HhC----cCHHHHHHhccccceeecccC-
Confidence 789999999999 99998643 233332221 14666655432 111 111111113555556665221
Q ss_pred HHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC--cchHHHHHHhc---------CCCCcEEEE
Q 008235 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSI---------SGKPHTVVF 364 (573)
Q Consensus 296 ~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l---------~~~~q~l~~ 364 (573)
. -|| .+..-+=..|.+||.|+|.- ...+..+++.- +....+-+.
T Consensus 164 ~----------------k~G---------lfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli 218 (403)
T COG1221 164 G----------------KAG---------LFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLI 218 (403)
T ss_pred C----------------cCc---------hheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceee
Confidence 1 011 12233446899999999975 44444444442 122345566
Q ss_pred eccCCccHHHHHH--HHhc-CCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccC
Q 008235 365 NDCLTYTSVPAVQ--NLLL-GSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428 (573)
Q Consensus 365 SAT~~~~~~~~~~--~~l~-~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~ 428 (573)
+||--.-.+.+.. .++. ..+..|.+.+. ++ ...+....+..++..+....
T Consensus 219 ~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpL--------rE------R~~Di~~L~e~Fl~~~~~~l 271 (403)
T COG1221 219 CATTEDLEEAVLAGADLTRRLNILTITLPPL--------RE------RKEDILLLAEHFLKSEARRL 271 (403)
T ss_pred eccccCHHHHHHhhcchhhhhcCceecCCCh--------hh------chhhHHHHHHHHHHHHHHHc
Confidence 7776554444444 3333 11124444432 11 13445555566666665543
No 459
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=78.91 E-value=11 Score=43.88 Aligned_cols=29 Identities=17% Similarity=0.400 Sum_probs=19.3
Q ss_pred CHHHHHHHHHcCCCCCCCccEEEEeCcccccC
Q 008235 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (573)
Q Consensus 313 TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~ 344 (573)
.||++.+.+..... .-.+|+|||+|.+..
T Consensus 400 ~~g~i~~~l~~~~~---~~~villDEidk~~~ 428 (775)
T TIGR00763 400 MPGRIIQGLKKAKT---KNPLFLLDEIDKIGS 428 (775)
T ss_pred CCchHHHHHHHhCc---CCCEEEEechhhcCC
Confidence 47777766654211 123899999999975
No 460
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=78.91 E-value=9.8 Score=35.59 Aligned_cols=50 Identities=8% Similarity=0.133 Sum_probs=36.1
Q ss_pred CccEEEEeCcccccC-----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHH
Q 008235 330 GVSLLVVDRLDSLSK-----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNL 379 (573)
Q Consensus 330 ~l~~lViDEad~ll~-----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~ 379 (573)
..++||+||.--.+. .+++..++..-|....+|+..-.+|+.+.+.+...
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 588999999987766 66666666666666666666666787777766543
No 461
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=78.86 E-value=15 Score=32.87 Aligned_cols=40 Identities=5% Similarity=0.094 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCC---CCeEEEEec--cccCCCccCC--CCEEEeCCCCC
Q 008235 469 SHIKNSVEADGRK---RPAVSMIDK--DHISTAELEE--YEVVIVPDFII 511 (573)
Q Consensus 469 ~~~l~~F~~~g~~---~~l~~lvd~--~s~rGlDip~--v~~VI~~d~P~ 511 (573)
...++.| ++... .++.+ +.- . ..|||+|+ ++.||..++|-
T Consensus 34 ~~~l~~f-~~~~~~~g~iL~~-v~~G~~-~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 34 EELLEKY-SAACEARGALLLA-VARGKV-SEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHH-HHhcCCCCEEEEE-EeCCee-ecceecCCCccEEEEEEecCC
Confidence 3577888 43322 34433 211 2 25999997 57899888773
No 462
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=78.69 E-value=7.9 Score=39.72 Aligned_cols=43 Identities=12% Similarity=0.021 Sum_probs=27.1
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHH
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa 269 (573)
.|+=+.+..|+| ||||.. ++.++..... .+..++|+..-..+-
T Consensus 54 ~G~iteI~G~~G-sGKTtL-aL~~~~~~~~---------~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 54 RGRIIEIYGPES-SGKTTL-ALHAIAEAQK---------AGGTAAFIDAEHALD 96 (321)
T ss_pred CCeEEEEECCCC-CCHHHH-HHHHHHHHHH---------cCCcEEEEcccchhH
Confidence 456677889999 999954 4555544433 255677775544333
No 463
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.58 E-value=5 Score=45.10 Aligned_cols=37 Identities=8% Similarity=0.045 Sum_probs=23.0
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEE
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVF 364 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~ 364 (573)
+..-+++||||+|.|-. ...+...++..+...-+++.
T Consensus 125 ~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~ 163 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFA 163 (620)
T ss_pred cCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 45678999999999875 44444444444444333443
No 464
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=78.45 E-value=12 Score=43.89 Aligned_cols=17 Identities=0% Similarity=-0.216 Sum_probs=14.9
Q ss_pred CcEEEEeCCCchhHHHHH
Q 008235 218 KDILETSGSSSTIVQIAW 235 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (573)
.+++++.|+| +|||...
T Consensus 195 ~n~lL~G~pG-vGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPG-VGKTAIV 211 (852)
T ss_pred CceEEEcCCC-CCHHHHH
Confidence 6899999999 9999654
No 465
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=78.42 E-value=8.9 Score=40.51 Aligned_cols=20 Identities=5% Similarity=-0.087 Sum_probs=17.0
Q ss_pred HhcCCcEEEEeCCCchhHHHH
Q 008235 214 YSSAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 214 il~g~dvl~~A~TG~SGKTla 234 (573)
+-.|.-+++++|+| +|||..
T Consensus 165 ig~Gq~~~IvG~~g-~GKTtL 184 (415)
T TIGR00767 165 IGKGQRGLIVAPPK-AGKTVL 184 (415)
T ss_pred eCCCCEEEEECCCC-CChhHH
Confidence 44688899999999 999964
No 466
>PRK10865 protein disaggregation chaperone; Provisional
Probab=78.39 E-value=17 Score=42.77 Aligned_cols=17 Identities=0% Similarity=-0.216 Sum_probs=14.7
Q ss_pred CcEEEEeCCCchhHHHHH
Q 008235 218 KDILETSGSSSTIVQIAW 235 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (573)
.+++++.|+| +|||...
T Consensus 200 ~n~lL~G~pG-vGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPG-VGKTAIV 216 (857)
T ss_pred CceEEECCCC-CCHHHHH
Confidence 5899999999 9999653
No 467
>PRK11823 DNA repair protein RadA; Provisional
Probab=77.95 E-value=9.3 Score=41.27 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=33.2
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.|.-+++..++| +|||.. ++-+...+.. .+.+++|++- .|-..|+...+..+
T Consensus 79 ~Gs~~lI~G~pG-~GKTtL-~lq~a~~~a~---------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 79 PGSVVLIGGDPG-IGKSTL-LLQVAARLAA---------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CCEEEEEECCCC-CCHHHH-HHHHHHHHHh---------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 346678889999 999964 3434433332 2457888774 45566777666665
No 468
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=77.73 E-value=2.6 Score=44.58 Aligned_cols=50 Identities=16% Similarity=0.039 Sum_probs=34.3
Q ss_pred HhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHH
Q 008235 214 YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274 (573)
Q Consensus 214 il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~ 274 (573)
-...+++++...|| ||||. ++-+++..+... +-++||.=|.-++....++
T Consensus 12 ~~e~~~~li~G~~G-sGKT~-~i~~ll~~~~~~---------g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 12 DSENRHILIIGATG-SGKTQ-AIRHLLDQIRAR---------GDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp GGGGG-EEEEE-TT-SSHHH-HHHHHHHHHHHT---------T-EEEEEEETTHHHHHH--
T ss_pred chhhCcEEEECCCC-CCHHH-HHHHHHHHHHHc---------CCEEEEEECCchHHHHhcC
Confidence 34568999999999 99996 456777777654 5578888888777655544
No 469
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.70 E-value=3.6 Score=44.26 Aligned_cols=42 Identities=10% Similarity=0.055 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHhcC-Cc-EEEEeCCCchhHHHHHHHHHHHHHHhc
Q 008235 203 VNSWGIEFWKCYSSA-KD-ILETSGSSSTIVQIAWIVATAADSIAR 246 (573)
Q Consensus 203 ~t~iQ~~aip~il~g-~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~ 246 (573)
.++.|...+..+++. .- +|+..||| ||||.. +..++..+...
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTG-SGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTG-SGKTTT-LYAALSELNTP 285 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCC-CCHHHH-HHHHHHHhcCC
Confidence 367788888888776 33 56678999 999976 56666666543
No 470
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=77.64 E-value=1.9 Score=48.39 Aligned_cols=161 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHhcCCcEEEEe----------CCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHH
Q 008235 203 VNSWGIEFWKCYSSAKDILETS----------GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A----------~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi 272 (573)
++..|.+++--+.+..+.+.-+ ..| -||--...--|++..+.. ..++|.++-+..|--..
T Consensus 265 lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAG-VGKGRTvAgiIfeNyLkG---------RKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 265 LSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAG-VGKGRTVAGIIFENYLKG---------RKRALWFSVSSDLKFDA 334 (1300)
T ss_pred hhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcc-cCCCceeEEEEehhhhcc---------cceeEEEEeccccccch
Q ss_pred HHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeC---------------HHHHHHHHHcCCCCCCCccEEEEe
Q 008235 273 RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVST---------------PERLLKLVSLKAIDVSGVSLLVVD 337 (573)
Q Consensus 273 ~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~T---------------P~rL~~~l~~~~~~l~~l~~lViD 337 (573)
.+.++.++..+|.+..+..=....-.-..-.+..--|+++| --|+.++++--.-++. ..||+|
T Consensus 335 ERDL~DigA~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~fe--GvIvfD 412 (1300)
T KOG1513|consen 335 ERDLRDIGATGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFE--GVIVFD 412 (1300)
T ss_pred hhchhhcCCCCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccc--eeEEeh
Q ss_pred CcccccC------------cchHHHHHHhcCCCCcEEEEeccCCccHHHHH
Q 008235 338 RLDSLSK------------GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAV 376 (573)
Q Consensus 338 Ead~ll~------------~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~ 376 (573)
|||+--. ...+..+-+.+| +.+++..|||-..+-++++
T Consensus 413 ECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGAsEPrNMa 462 (1300)
T KOG1513|consen 413 ECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATGASEPRNMA 462 (1300)
T ss_pred hhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccCCCCcchhh
No 471
>CHL00095 clpC Clp protease ATP binding subunit
Probab=77.39 E-value=15 Score=42.98 Aligned_cols=17 Identities=0% Similarity=-0.216 Sum_probs=15.1
Q ss_pred CcEEEEeCCCchhHHHHH
Q 008235 218 KDILETSGSSSTIVQIAW 235 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (573)
.+++++.|+| +|||...
T Consensus 201 ~n~lL~G~pG-vGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPG-VGKTAIA 217 (821)
T ss_pred CCeEEECCCC-CCHHHHH
Confidence 6899999999 9999764
No 472
>PRK09694 helicase Cas3; Provisional
Probab=77.27 E-value=9.7 Score=44.59 Aligned_cols=78 Identities=17% Similarity=0.280 Sum_probs=53.1
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH-------HHHh-hcCC---CcEEEeCHHHHHHHHHc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ-------ITGL-RSCE---PEFLVSTPERLLKLVSL 323 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~-------~~~l-~~~~---~~IlV~TP~rL~~~l~~ 323 (573)
.+..+||+++|++-|+++++.++........+..++|.....+. ...+ +++. ..|||+|. .++.
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQ-----ViE~ 633 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQ-----VVEQ 633 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECc-----chhh
Confidence 36689999999999999999988753224678899998765433 2223 2222 36999993 3433
Q ss_pred CCCCCCCccEEEEeCc
Q 008235 324 KAIDVSGVSLLVVDRL 339 (573)
Q Consensus 324 ~~~~l~~l~~lViDEa 339 (573)
.+++ +++++|.|-|
T Consensus 634 -GLDI-d~DvlItdla 647 (878)
T PRK09694 634 -SLDL-DFDWLITQLC 647 (878)
T ss_pred -eeec-CCCeEEECCC
Confidence 3555 4788888755
No 473
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=77.22 E-value=1.2 Score=50.32 Aligned_cols=46 Identities=13% Similarity=-0.012 Sum_probs=37.1
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHH
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~ 276 (573)
.+++++|||| ||||..+++|.|-. .+..+||+=|-.|+...+....
T Consensus 176 ~HvlviapTg-SGKgvg~ViPnLL~------------~~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTR-SGKGVGLVVPTLLS------------WGHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCC-CCCceEEEccchhh------------CCCCEEEEeCcHHHHHHHHHHH
Confidence 7899999999 99999999998842 1345899999999976655543
No 474
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=77.22 E-value=8.5 Score=45.14 Aligned_cols=16 Identities=6% Similarity=-0.058 Sum_probs=14.4
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
.+++++.|.| +|||..
T Consensus 209 ~n~lLvG~pG-vGKTal 224 (852)
T TIGR03345 209 NNPILTGEAG-VGKTAV 224 (852)
T ss_pred CceeEECCCC-CCHHHH
Confidence 6899999999 999964
No 475
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=77.07 E-value=10 Score=42.53 Aligned_cols=61 Identities=16% Similarity=0.369 Sum_probs=40.8
Q ss_pred EeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC-CCCCCCccEEEEeCcccccC---cchHHHHHHhc
Q 008235 288 SLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK-AIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSI 355 (573)
Q Consensus 288 ~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~-~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l 355 (573)
...||.....+++..++ --|=+-|||+.+-|... ..+ -++++||.|.|.. .+--..+++-+
T Consensus 381 ~sLGGvrDEAEIRGHRR---TYIGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 381 ISLGGVRDEAEIRGHRR---TYIGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred EecCccccHHHhccccc---cccccCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCChHHHHHhhc
Confidence 34588877777766655 23345699999988763 232 3889999999987 44444455544
No 476
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=77.01 E-value=14 Score=44.92 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=56.0
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhc-CCCcEEEeCHHHHHHHHHcCCCCCCCccEE
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPERLLKLVSLKAIDVSGVSLL 334 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~-~~~~IlV~TP~rL~~~l~~~~~~l~~l~~l 334 (573)
...+||.+|+++-+..+.+.+.......+.+..+||+.+..++...+.. +...|||+|. +....+++.+|++|
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATN------IAEtSITIpgI~yV 359 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATN------VAETSLTVPGIKYV 359 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEecc------HHhhccccCcceEE
Confidence 3468999999999888888777653224567889999998888776653 3578999995 44456788899887
Q ss_pred E
Q 008235 335 V 335 (573)
Q Consensus 335 V 335 (573)
|
T Consensus 360 I 360 (1294)
T PRK11131 360 I 360 (1294)
T ss_pred E
Confidence 7
No 477
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=77.00 E-value=7.2 Score=40.30 Aligned_cols=71 Identities=21% Similarity=0.372 Sum_probs=50.6
Q ss_pred CCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCC
Q 008235 254 FTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSG 330 (573)
Q Consensus 254 ~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~ 330 (573)
...|.+||.+-...=+..|++.+-- .|+.++.++||.+..+. +..++.+.-||+|+|- +.++.++|.+
T Consensus 419 KT~PpVLIFaEkK~DVD~IhEYLLl---KGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATD------VASKGLDFp~ 489 (610)
T KOG0341|consen 419 KTSPPVLIFAEKKADVDDIHEYLLL---KGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATD------VASKGLDFPD 489 (610)
T ss_pred cCCCceEEEeccccChHHHHHHHHH---ccceeEEeecCcchhHHHHHHHHHhcCCCceEEEec------chhccCCCcc
Confidence 3688999999988877777765432 28999999999886544 3455666789999993 3344556555
Q ss_pred ccE
Q 008235 331 VSL 333 (573)
Q Consensus 331 l~~ 333 (573)
+.+
T Consensus 490 iqH 492 (610)
T KOG0341|consen 490 IQH 492 (610)
T ss_pred chh
Confidence 544
No 478
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=76.71 E-value=16 Score=40.68 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=23.6
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccC
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCL 368 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~ 368 (573)
....+++||||+|.|-. ...+...++.. +..-+++|.+|-
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-p~~~vfI~~tte 158 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEP-PPYIVFIFATTE 158 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccC-CCCEEEEEecCC
Confidence 45678999999998864 33444444432 333444454443
No 479
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=76.58 E-value=3.8 Score=42.47 Aligned_cols=54 Identities=9% Similarity=0.018 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHhc-CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHH
Q 008235 204 NSWGIEFWKCYSS-AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (573)
Q Consensus 204 t~iQ~~aip~il~-g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa 269 (573)
++.+...+..+.. +.+++++.+|| ||||.. +-.++..+. ...+.+++--+.||.
T Consensus 164 ~~~~~~~L~~~v~~~~~ili~G~tG-sGKTTl-l~al~~~i~----------~~~riv~iEd~~El~ 218 (340)
T TIGR03819 164 PPGVARLLRAIVAARLAFLISGGTG-SGKTTL-LSALLALVA----------PDERIVLVEDAAELR 218 (340)
T ss_pred CHHHHHHHHHHHhCCCeEEEECCCC-CCHHHH-HHHHHccCC----------CCCcEEEECCcceec
Confidence 4466666655544 58999999999 999954 233333221 234677777787873
No 480
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=76.54 E-value=17 Score=38.03 Aligned_cols=17 Identities=6% Similarity=-0.181 Sum_probs=14.6
Q ss_pred CcEEEEeCCCchhHHHHH
Q 008235 218 KDILETSGSSSTIVQIAW 235 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (573)
.++|...|.| +|||..+
T Consensus 49 ~SmIl~GPPG-~GKTTlA 65 (436)
T COG2256 49 HSMILWGPPG-TGKTTLA 65 (436)
T ss_pred ceeEEECCCC-CCHHHHH
Confidence 5789999999 9999654
No 481
>PHA02542 41 41 helicase; Provisional
Probab=76.37 E-value=5 Score=43.64 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=21.9
Q ss_pred Cc-EEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc
Q 008235 218 KD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (573)
Q Consensus 218 ~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~ 263 (573)
.+ +++.|++| .||| +|++-+...... .|..++|++
T Consensus 190 G~LiiIaarPg-mGKT-tfalniA~~~a~---------~g~~Vl~fS 225 (473)
T PHA02542 190 KTLNVLLAGVN-VGKS-LGLCSLAADYLQ---------QGYNVLYIS 225 (473)
T ss_pred CcEEEEEcCCC-ccHH-HHHHHHHHHHHh---------cCCcEEEEe
Confidence 44 45568999 9999 555655555432 244566665
No 482
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=76.35 E-value=7.5 Score=43.87 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=38.5
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHH--HHHHHHHHHhhhh
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQE--KAAKVRSVCKPLK 280 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Ptre--La~Qi~~~~~~l~ 280 (573)
..++++.++|| +|||..+ ..++..... .+..++|+=|-.. |...++..++..+
T Consensus 176 ~~H~lv~G~TG-sGKT~l~-~~l~~q~i~---------~g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 176 VGHTLVLGTTG-VGKTRLA-ELLITQDIR---------RGDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCcEEEECCCC-CCHHHHH-HHHHHHHHH---------cCCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 47899999999 9999776 444444443 2557888888754 7777888777763
No 483
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=76.29 E-value=7.2 Score=40.07 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=28.2
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHH
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa 269 (573)
.|+=+.+..|.| ||||. +++.++..... .+..++|+.+-..+-
T Consensus 54 ~G~iteI~Gp~G-sGKTt-Lal~~~~~~~~---------~g~~~vyId~E~~~~ 96 (325)
T cd00983 54 KGRIIEIYGPES-SGKTT-LALHAIAEAQK---------LGGTVAFIDAEHALD 96 (325)
T ss_pred CCeEEEEECCCC-CCHHH-HHHHHHHHHHH---------cCCCEEEECccccHH
Confidence 346677889999 99995 45555544432 256788887654444
No 484
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=76.27 E-value=12 Score=35.48 Aligned_cols=39 Identities=5% Similarity=-0.015 Sum_probs=23.6
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEccc
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 265 (573)
.|.=+.+..|+| +|||...+ -++..... .+-.++++.-.
T Consensus 11 ~g~i~~i~G~~G-sGKT~l~~-~~~~~~~~---------~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPG-SGKTNICM-ILAVNAAR---------QGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCC-CCHHHHHH-HHHHHHHh---------CCCeEEEEECC
Confidence 345677889999 99996543 33332222 24467776653
No 485
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=76.19 E-value=7.3 Score=46.37 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=54.6
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+..+||.|.||.-+.++...+... |+.+..++||++..... ..+..+...|||||-- + ...+++.+|+
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~---Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdA-----F-GMGIDkPDVR 750 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEF---GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVA-----F-GMGINKPDVR 750 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHC---CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEech-----h-hcCCCccCCc
Confidence 345789999999988888777654 89999999999865433 3445567999999942 2 3458899999
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||-
T Consensus 751 ~VIH 754 (1195)
T PLN03137 751 FVIH 754 (1195)
T ss_pred EEEE
Confidence 9885
No 486
>PHA02535 P terminase ATPase subunit; Provisional
Probab=76.03 E-value=26 Score=38.83 Aligned_cols=135 Identities=10% Similarity=0.034 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc--
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-- 281 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-- 281 (573)
.++|..++..-+..+.-++.-.-= .|+|..|..-++...+.. |-..++|+|+++.|.+..+.|..+..
T Consensus 140 ~~YQ~~W~~~~~~~r~r~ilKSRQ-iG~T~~fA~EA~~dal~~---------G~nqiflSas~~QA~~f~~yi~~~a~~~ 209 (581)
T PHA02535 140 FDYQKHWYRAGLHHRTRNILKSRQ-IGATYYFAREALEDALLT---------GRNQIFLSASKAQAHVFKQYIIAFAREA 209 (581)
T ss_pred HHHHHHHHhCccccceeeEeeecc-cchHHHHHHHHHHHHHhc---------CCceEEECCCHHHHHHHHHHHHHHHHhh
Confidence 899999986532233222222222 559999988887766642 45679999999999988888777732
Q ss_pred CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCC-CCccEEEEeCcccccCcchHHHHHHhc--CCC
Q 008235 282 FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDV-SGVSLLVVDRLDSLSKGDTLSLIRQSI--SGK 358 (573)
Q Consensus 282 ~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l-~~l~~lViDEad~ll~~~~l~~Il~~l--~~~ 358 (573)
.++.. .| .. -.+.+ |..|..-. .+.-.. ..=..|+|||+=-+-+...+..+...+ ...
T Consensus 210 ~~v~l---~~-~~-----I~f~n-Ga~I~fLs---------tn~~taqg~~G~vylDE~aw~~d~~~l~k~a~ama~~~~ 270 (581)
T PHA02535 210 ADVEL---TG-DP-----IILPN-GAELHFLG---------TNANTAQSYHGNVYFDEYFWIPKFQELNKVASGMATHKH 270 (581)
T ss_pred cCcee---ec-ce-----EEecC-CCEEEEec---------CCCccccccCCCEEEEehhccCCHHHHHHHHHHHHhhcC
Confidence 23322 11 00 11233 44443321 111111 112469999995444444454444433 245
Q ss_pred CcEEEEecc
Q 008235 359 PHTVVFNDC 367 (573)
Q Consensus 359 ~q~l~~SAT 367 (573)
.+...||.-
T Consensus 271 ~r~t~fSTP 279 (581)
T PHA02535 271 WRKTYFSTP 279 (581)
T ss_pred CcEEEEECC
Confidence 677777754
No 487
>PRK09165 replicative DNA helicase; Provisional
Probab=76.01 E-value=14 Score=40.55 Aligned_cols=23 Identities=17% Similarity=-0.009 Sum_probs=15.6
Q ss_pred cEEEEeCCCchhHHHHHHHHHHHHH
Q 008235 219 DILETSGSSSTIVQIAWIVATAADS 243 (573)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l 243 (573)
=+++.|+|| +||| +|.+-+...+
T Consensus 219 livIaarpg-~GKT-~~al~ia~~~ 241 (497)
T PRK09165 219 LIILAGRPS-MGKT-ALATNIAFNA 241 (497)
T ss_pred eEEEEeCCC-CChH-HHHHHHHHHH
Confidence 356678999 9999 4555554444
No 488
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=75.81 E-value=17 Score=37.52 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=26.5
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEecc
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDC 367 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT 367 (573)
...-+++||||||+|-. ...+..+++.-|....+++ .++
T Consensus 108 ~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il-~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAIL-LTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEE-EeC
Confidence 35678999999999986 5566666666555554554 444
No 489
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=75.62 E-value=21 Score=33.04 Aligned_cols=50 Identities=8% Similarity=0.086 Sum_probs=32.3
Q ss_pred CCCccEEEEeCcccccC-----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHH
Q 008235 328 VSGVSLLVVDRLDSLSK-----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377 (573)
Q Consensus 328 l~~l~~lViDEad~ll~-----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~ 377 (573)
-...++||+||+=..++ .+++..++..-|...-+|+..-..|+++.+.+.
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 46789999999976555 777888888777777777777777777666553
No 490
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=75.56 E-value=64 Score=29.33 Aligned_cols=129 Identities=11% Similarity=0.046 Sum_probs=78.1
Q ss_pred EEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHHHHHHHHhcCCCCC
Q 008235 404 VNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRP 483 (573)
Q Consensus 404 ~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~l~~F~~~g~~~~ 483 (573)
|+.+. ...+...+..++.+.+..+ .+++|.|.+...++.|-+.|-...-... +-|+-.... ......+
T Consensus 6 FYhL~-~~~~~~~acrL~~Ka~~~G-----~rv~I~~~d~~~~~~LD~~LWtf~~~SF-lPH~~~~~~-----~~a~~PV 73 (154)
T PRK06646 6 IYQTS-DELLLKSILLLIEKCYYSD-----LKSVILTADADQQEMLNKNLWTYSRKQF-IPHGSKLDP-----QPEKQPI 73 (154)
T ss_pred EEEeC-CChHHHHHHHHHHHHHHcC-----CEEEEEcCCHHHHHHHHHHhcCCCCCCC-CCCCCCCCC-----CCCCCCE
Confidence 44443 6788999999999988764 5999999999999999999976543332 335410000 0011122
Q ss_pred eEEEEeccccCCCccCCCCEEEeCCC---CC--CHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCCCC
Q 008235 484 AVSMIDKDHISTAELEEYEVVIVPDF---II--SMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVV 558 (573)
Q Consensus 484 l~~lvd~~s~rGlDip~v~~VI~~d~---P~--s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~v 558 (573)
+ + + ..+-+..+-+++||++. |. ..-.|..|.-| +++++-.+.+...++.--+.++..|+.+
T Consensus 74 ~---L--~-~~~~~p~~~~vLiNL~~~~~~~~~~~p~~f~~F~R--------Vi~vv~d~e~~~~ar~~w~~~k~~~~~~ 139 (154)
T PRK06646 74 Y---I--T-DELQNPNNASVLVIISPTDIGKILQAKEYIRVFKR--------IIIITDLPEDLKELTVKINKFTGQENKI 139 (154)
T ss_pred E---E--e-cCCCCCCCCCEEEECCCccccccccCchhhhccCE--------EEEEeCChHHHHHHHHHHHHHHhCCCcc
Confidence 2 2 1 12223336677888876 11 23345555544 2333335667778888888888888765
No 491
>PRK10263 DNA translocase FtsK; Provisional
Probab=75.39 E-value=14 Score=44.49 Aligned_cols=26 Identities=4% Similarity=-0.086 Sum_probs=18.0
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHH
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSI 244 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~ 244 (573)
-++|+..-|| ||||.+.-.-++..+.
T Consensus 1011 PHLLIAGaTG-SGKSv~LntLIlSLl~ 1036 (1355)
T PRK10263 1011 PHLLVAGTTG-SGKSVGVNAMILSMLY 1036 (1355)
T ss_pred CcEEEecCCC-CCHHHHHHHHHHHHHH
Confidence 4789999999 9999764433333333
No 492
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=75.11 E-value=18 Score=44.12 Aligned_cols=73 Identities=10% Similarity=0.163 Sum_probs=56.8
Q ss_pred cEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcC-CCcEEEeCHHHHHHHHHcCCCCCCCccEEE
Q 008235 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSC-EPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (573)
Q Consensus 257 ~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~-~~~IlV~TP~rL~~~l~~~~~~l~~l~~lV 335 (573)
..+||.+|++.-+.++.+.+......++.+..+||+.+...|...+... +..|||+|. +....+++.+|++||
T Consensus 280 GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATN------IAEtSLTIpgV~yVI 353 (1283)
T TIGR01967 280 GDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATN------VAETSLTVPGIHYVI 353 (1283)
T ss_pred CCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCCCceEEEecc------HHHhccccCCeeEEE
Confidence 4689999999998888888876543367788999999998887777653 258999995 344567888898855
No 493
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=75.09 E-value=12 Score=41.76 Aligned_cols=38 Identities=5% Similarity=-0.101 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHhcC--CcEEEEeCCCchhHHHHHHHHHHHHH
Q 008235 204 NSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADS 243 (573)
Q Consensus 204 t~iQ~~aip~il~g--~dvl~~A~TG~SGKTlaf~lp~l~~l 243 (573)
.+-|.+.+..++.. .-++++.||| ||||.. +..++..+
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tG-SGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTG-SGKTVS-LYTALNIL 340 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCC-CCHHHH-HHHHHHhh
Confidence 55677777666553 4577889999 999966 34456555
No 494
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.01 E-value=1.8 Score=43.69 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=19.8
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHh
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIA 245 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~ 245 (573)
+-.|++.+.||| |||||.. -.|..++.
T Consensus 96 ~KSNILLiGPTG-sGKTlLA--qTLAk~Ln 122 (408)
T COG1219 96 SKSNILLIGPTG-SGKTLLA--QTLAKILN 122 (408)
T ss_pred eeccEEEECCCC-CcHHHHH--HHHHHHhC
Confidence 346899999999 9999753 34555553
No 495
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.94 E-value=9.5 Score=42.95 Aligned_cols=40 Identities=8% Similarity=0.135 Sum_probs=26.5
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccC
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCL 368 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~ 368 (573)
+..-+++||||||.|.. ...+..+++..+... +++|.+|-
T Consensus 119 ~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t-ifIL~tt~ 160 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA-IFILATTE 160 (614)
T ss_pred cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe-EEEEEeCC
Confidence 45678999999999875 555666666644443 44455553
No 496
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=74.94 E-value=9.6 Score=39.64 Aligned_cols=74 Identities=15% Similarity=0.262 Sum_probs=51.2
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH-------HHHhhcCCCcEEEeCHHHHHHHHHcCCCCC
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ-------ITGLRSCEPEFLVSTPERLLKLVSLKAIDV 328 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~-------~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l 328 (573)
+.++||+++|++-|..+++.++... ....+..++|+....+. ...+.++...|||||. .+.. .+++
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~-~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~-----~~~~-GiDi 294 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENA-PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ-----VIEA-SLDI 294 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhc-CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc-----chhc-eecc
Confidence 5689999999999999888887642 13468889999875443 2345555788999994 3333 3555
Q ss_pred CCccEEEEe
Q 008235 329 SGVSLLVVD 337 (573)
Q Consensus 329 ~~l~~lViD 337 (573)
. +.++|.+
T Consensus 295 ~-~~~vi~~ 302 (358)
T TIGR01587 295 S-ADVMITE 302 (358)
T ss_pred C-CCEEEEc
Confidence 3 5566654
No 497
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=74.90 E-value=19 Score=42.70 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=55.2
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHH---Hhhc--CCCcEEEeCHHHHHHHHHcCCCCCCC
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQIT---GLRS--CEPEFLVSTPERLLKLVSLKAIDVSG 330 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~---~l~~--~~~~IlV~TP~rL~~~l~~~~~~l~~ 330 (573)
+.++||+|.+++-+..+.+.+... .|++++.++||++..+... .+.. +++.|+|+|- +-...+++..
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~--~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd------vgseGlNlq~ 564 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALRER--EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE------IGSEGRNFQF 564 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhc--cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech------hhccCCCccc
Confidence 568999999999999999888432 3899999999998765433 3333 2589999992 2334577888
Q ss_pred ccEEEEeC
Q 008235 331 VSLLVVDR 338 (573)
Q Consensus 331 l~~lViDE 338 (573)
+++||.=+
T Consensus 565 a~~VInfD 572 (956)
T PRK04914 565 ASHLVLFD 572 (956)
T ss_pred ccEEEEec
Confidence 88877543
No 498
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=74.86 E-value=46 Score=36.91 Aligned_cols=157 Identities=14% Similarity=0.081 Sum_probs=80.7
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcC------------------------------CCCcEEEEeccC--CccHHH
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSIS------------------------------GKPHTVVFNDCL--TYTSVP 374 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~------------------------------~~~q~l~~SAT~--~~~~~~ 374 (573)
.++.++|||||....- ...++.+....+ +..-.+.++++. |..+.+
T Consensus 527 ~~~kh~vIDeaqdys~~q~~~~r~l~~~as~tivgd~gq~i~~~~~e~~~~e~~~~~fed~~~e~v~l~~syrSt~eI~e 606 (747)
T COG3973 527 RRLKHTVIDEAQDYSRFQFTDNRTLAERASMTIVGDYGQVIYDEAQELSPMERMDVFFEDPSFEYVGLIASYRSTAEIDE 606 (747)
T ss_pred ccccceeechhhhcchhhhHHHhhhhhhccceEeccCCceehhhhcccCHHHHHHHHHhCCCchhhhhhhhhcChHHHHH
Confidence 4578999999985543 444444444332 112233344443 334667
Q ss_pred HHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHH
Q 008235 375 AVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLK 454 (573)
Q Consensus 375 ~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~ 454 (573)
++..++.+. ..+.+. ..+..--+.+.... .+.-.+.+-+++..+-..+ ...+.|.|.+.+.|..+...|+
T Consensus 607 fan~~l~d~---~~~~p~--~rsge~p~~i~~~~-ne~l~qr~~~ii~~mkk~~----~etiaVi~kt~~d~~~~~d~lr 676 (747)
T COG3973 607 FANSLLPDR---FRIHPL--TRSGEKPAVIMSVA-NEELVQRNPDIIPRMKKRG----SETIAVICKTDHDCKAVMDSLR 676 (747)
T ss_pred HHHHhccCC---Cccchh--hcCCCCceeeeccc-hHHHHHhhHHHHHHHHhcC----CCceEEECCcHHHHHHHHHHHh
Confidence 777777631 111110 01111112233332 3434444445555443333 4688899999999999999998
Q ss_pred HCCCCeeeecCCCHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCC
Q 008235 455 CKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFI 510 (573)
Q Consensus 455 ~~g~~~~~~~~~~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P 510 (573)
....--. +|. .-..| .....+..++. +.||.+ ++||.||+.
T Consensus 677 e~~~~r~--I~k----~nq~f----~~~~~vipvy~--aKGlEF---D~viv~d~s 717 (747)
T COG3973 677 EKDSQRT--IAK----ENQRF----HHGSDVIPVYD--AKGLEF---DHVIVVDPS 717 (747)
T ss_pred hcchhhH--HHh----hcccc----cCCceEEEeee--ccccee---eeEEEecch
Confidence 6532111 111 01223 23333334433 469976 588888873
No 499
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.78 E-value=7.5 Score=43.61 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=28.9
Q ss_pred CCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEec
Q 008235 328 VSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFND 366 (573)
Q Consensus 328 l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SA 366 (573)
+++-..||+|||-.-+| +..++..+..+..+ ++++.=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEe
Confidence 56778999999999999 67778888777666 4555434
No 500
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=74.70 E-value=4.4 Score=38.49 Aligned_cols=39 Identities=13% Similarity=-0.005 Sum_probs=23.0
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHH
Q 008235 220 ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268 (573)
Q Consensus 220 vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreL 268 (573)
++++.||| ||||... ..++..+... .+..++++.-..|+
T Consensus 4 ilI~GptG-SGKTTll-~~ll~~~~~~--------~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTG-SGKSTTL-AAMIDYINKN--------KTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCC-CCHHHHH-HHHHHHhhhc--------CCcEEEEEcCCccc
Confidence 57788999 9999653 3345444322 13355665554444
Done!