Query 008235
Match_columns 573
No_of_seqs 449 out of 2711
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 21:22:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.7E-63 6E-68 533.1 43.8 382 150-565 41-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1.7E-57 5.9E-62 483.4 41.4 388 152-569 2-413 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 8.6E-55 2.9E-59 462.0 35.5 361 167-562 37-406 (410)
4 3eiq_A Eukaryotic initiation f 100.0 1.3E-53 4.6E-58 452.8 32.5 365 167-565 40-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 2.8E-52 9.6E-57 441.0 39.0 361 167-564 21-390 (400)
6 1xti_A Probable ATP-dependent 100.0 3.2E-52 1.1E-56 438.8 39.2 360 168-561 9-380 (391)
7 3sqw_A ATP-dependent RNA helic 100.0 1.9E-52 6.6E-57 463.7 33.8 354 182-552 28-411 (579)
8 3i5x_A ATP-dependent RNA helic 100.0 3.2E-52 1.1E-56 460.7 33.9 354 182-552 79-462 (563)
9 3fmp_B ATP-dependent RNA helic 100.0 5.4E-54 1.8E-58 465.6 19.1 370 153-560 77-468 (479)
10 3fht_A ATP-dependent RNA helic 100.0 3.4E-51 1.2E-55 433.8 36.4 357 166-560 24-401 (412)
11 1fuu_A Yeast initiation factor 100.0 3.9E-52 1.3E-56 438.4 22.0 363 167-565 21-392 (394)
12 1hv8_A Putative ATP-dependent 100.0 1.1E-49 3.7E-54 415.2 37.5 349 167-558 6-364 (367)
13 3pey_A ATP-dependent RNA helic 100.0 1E-49 3.6E-54 419.5 35.9 347 167-552 5-370 (395)
14 3oiy_A Reverse gyrase helicase 100.0 4.7E-50 1.6E-54 426.5 32.2 329 183-552 7-376 (414)
15 2z0m_A 337AA long hypothetical 100.0 1.2E-47 4E-52 395.3 33.4 325 184-553 3-336 (337)
16 2v1x_A ATP-dependent DNA helic 100.0 1.6E-46 5.3E-51 414.5 37.1 330 183-548 29-383 (591)
17 4ddu_A Reverse gyrase; topoiso 100.0 8.1E-47 2.8E-51 441.6 32.4 326 185-552 66-503 (1104)
18 3fho_A ATP-dependent RNA helic 100.0 1.5E-47 5E-52 417.7 21.4 348 183-561 127-493 (508)
19 1tf5_A Preprotein translocase 100.0 3.5E-46 1.2E-50 413.1 31.1 321 190-541 77-547 (844)
20 1oyw_A RECQ helicase, ATP-depe 100.0 8.5E-45 2.9E-49 396.4 35.8 323 185-549 12-353 (523)
21 3l9o_A ATP-dependent RNA helic 100.0 3E-45 1E-49 428.5 30.2 310 203-545 185-604 (1108)
22 1gku_B Reverse gyrase, TOP-RG; 100.0 4.4E-46 1.5E-50 435.5 22.9 339 169-553 32-468 (1054)
23 2fsf_A Preprotein translocase 100.0 1.5E-44 5.2E-49 398.8 28.4 315 192-541 70-585 (853)
24 2ykg_A Probable ATP-dependent 100.0 5.3E-45 1.8E-49 412.9 22.3 341 187-547 3-524 (696)
25 4a2p_A RIG-I, retinoic acid in 100.0 9E-44 3.1E-48 391.7 28.9 325 202-541 7-510 (556)
26 3tbk_A RIG-I helicase domain; 100.0 1.9E-43 6.3E-48 388.7 30.8 331 200-547 2-515 (555)
27 1nkt_A Preprotein translocase 100.0 2.6E-42 8.8E-47 381.4 35.2 334 191-555 106-637 (922)
28 4a2q_A RIG-I, retinoic acid in 100.0 7.1E-42 2.4E-46 392.1 28.9 328 193-541 244-751 (797)
29 2p6r_A Afuhel308 helicase; pro 100.0 3.1E-41 1.1E-45 381.9 28.4 323 178-541 6-390 (702)
30 2zj8_A DNA helicase, putative 100.0 1.4E-41 4.6E-46 385.9 24.8 325 169-541 3-389 (720)
31 2va8_A SSO2462, SKI2-type heli 100.0 3.4E-40 1.2E-44 374.3 33.9 325 167-540 8-409 (715)
32 2xgj_A ATP-dependent RNA helic 100.0 3.2E-40 1.1E-44 382.9 32.9 312 203-547 87-508 (1010)
33 1wp9_A ATP-dependent RNA helic 100.0 8.3E-40 2.9E-44 352.3 32.9 319 201-541 8-477 (494)
34 4gl2_A Interferon-induced heli 100.0 9.4E-41 3.2E-45 378.2 25.4 321 201-538 6-517 (699)
35 4a2w_A RIG-I, retinoic acid in 100.0 1.3E-40 4.3E-45 386.2 26.3 329 193-541 244-751 (936)
36 2whx_A Serine protease/ntpase/ 100.0 1.9E-41 6.5E-46 375.1 14.6 304 204-562 173-504 (618)
37 2jlq_A Serine protease subunit 100.0 7.9E-41 2.7E-45 359.0 17.6 308 194-562 1-337 (451)
38 4a4z_A Antiviral helicase SKI2 100.0 1.5E-38 5E-43 369.0 30.3 311 200-547 37-502 (997)
39 1gm5_A RECG; helicase, replica 100.0 3.6E-39 1.2E-43 363.4 24.2 307 201-542 367-700 (780)
40 4f92_B U5 small nuclear ribonu 100.0 8.7E-38 3E-42 377.5 33.5 338 183-547 912-1316(1724)
41 1yks_A Genome polyprotein [con 100.0 8.9E-41 3E-45 357.1 5.8 287 213-562 4-325 (440)
42 3fe2_A Probable ATP-dependent 100.0 1.4E-37 4.8E-42 306.2 24.1 224 149-392 13-240 (242)
43 2wv9_A Flavivirin protease NS2 100.0 6.3E-39 2.1E-43 357.2 14.0 312 190-560 203-557 (673)
44 4f92_B U5 small nuclear ribonu 100.0 2.6E-37 9.1E-42 373.3 28.4 336 193-547 75-481 (1724)
45 2eyq_A TRCF, transcription-rep 100.0 2E-36 6.7E-41 356.1 34.2 304 200-539 601-922 (1151)
46 3o8b_A HCV NS3 protease/helica 100.0 3E-38 1E-42 347.1 12.5 283 204-552 219-531 (666)
47 2oca_A DAR protein, ATP-depend 100.0 1E-36 3.5E-41 332.6 22.1 308 203-537 114-453 (510)
48 3fmo_B ATP-dependent RNA helic 100.0 2.1E-36 7E-41 307.2 21.2 214 151-390 75-298 (300)
49 2z83_A Helicase/nucleoside tri 100.0 1.7E-37 5.9E-42 333.6 12.8 272 212-539 16-313 (459)
50 3iuy_A Probable ATP-dependent 100.0 1.3E-35 4.6E-40 289.2 21.0 196 184-388 29-227 (228)
51 1wrb_A DJVLGB; RNA helicase, D 100.0 1.6E-35 5.4E-40 293.4 21.2 236 151-403 7-252 (253)
52 2v6i_A RNA helicase; membrane, 100.0 2.6E-35 8.9E-40 314.1 21.5 267 216-536 1-288 (431)
53 2xau_A PRE-mRNA-splicing facto 100.0 4.8E-35 1.7E-39 331.7 21.4 328 168-541 73-445 (773)
54 2fwr_A DNA repair protein RAD2 100.0 1.1E-34 3.6E-39 313.5 21.9 290 201-539 92-454 (472)
55 3ber_A Probable ATP-dependent 100.0 3.6E-34 1.2E-38 283.1 23.7 200 168-390 44-248 (249)
56 3h1t_A Type I site-specific re 100.0 9.5E-35 3.3E-39 322.6 21.8 308 201-528 177-545 (590)
57 1vec_A ATP-dependent RNA helic 100.0 6.6E-34 2.3E-38 272.5 23.8 195 168-384 4-203 (206)
58 3bor_A Human initiation factor 100.0 2.3E-34 8E-39 282.3 20.8 203 166-390 29-235 (237)
59 1q0u_A Bstdead; DEAD protein, 100.0 2.4E-34 8.2E-39 278.6 19.9 201 168-391 5-213 (219)
60 3ly5_A ATP-dependent RNA helic 100.0 3.3E-34 1.1E-38 285.5 19.5 192 183-384 62-258 (262)
61 3dkp_A Probable ATP-dependent 100.0 3.1E-34 1.1E-38 282.7 18.5 220 149-391 9-242 (245)
62 2oxc_A Probable ATP-dependent 100.0 8.5E-34 2.9E-38 277.0 21.3 200 166-389 23-228 (230)
63 1t6n_A Probable ATP-dependent 100.0 3.1E-33 1.1E-37 270.8 23.1 199 168-388 15-219 (220)
64 2pl3_A Probable ATP-dependent 100.0 2.7E-33 9.1E-38 274.4 22.7 205 167-391 25-234 (236)
65 2gxq_A Heat resistant RNA depe 100.0 2.5E-33 8.7E-38 268.5 21.8 200 169-389 3-205 (207)
66 1qde_A EIF4A, translation init 100.0 6.6E-33 2.3E-37 269.2 21.1 202 166-391 13-218 (224)
67 3jux_A Protein translocase sub 100.0 2.3E-30 7.9E-35 280.4 37.3 321 204-555 77-607 (822)
68 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.6E-31 5.5E-36 308.6 23.8 316 202-538 271-708 (1038)
69 3rc3_A ATP-dependent RNA helic 100.0 2.6E-32 8.8E-37 303.2 14.7 277 210-547 148-452 (677)
70 2ipc_A Preprotein translocase 100.0 8.9E-28 3.1E-32 264.6 38.1 133 190-344 73-216 (997)
71 3dmq_A RNA polymerase-associat 100.0 9.1E-29 3.1E-33 287.3 25.5 329 200-551 151-625 (968)
72 1z63_A Helicase of the SNF2/RA 100.0 3.3E-28 1.1E-32 264.5 26.8 306 203-539 38-453 (500)
73 2p6n_A ATP-dependent RNA helic 99.9 5.3E-27 1.8E-31 221.9 16.9 177 376-567 8-190 (191)
74 2jgn_A DBX, DDX3, ATP-dependen 99.9 1E-25 3.5E-30 212.0 19.3 163 395-568 15-182 (185)
75 1z3i_X Similar to RAD54-like; 99.9 7.3E-24 2.5E-28 236.7 36.4 333 203-552 56-543 (644)
76 1c4o_A DNA nucleotide excision 99.9 3.8E-25 1.3E-29 247.1 24.3 172 357-549 379-560 (664)
77 3mwy_W Chromo domain-containin 99.9 1.6E-24 5.6E-29 247.8 27.8 325 202-548 236-695 (800)
78 2d7d_A Uvrabc system protein B 99.9 4.3E-24 1.5E-28 238.4 25.1 171 357-548 385-565 (661)
79 3b6e_A Interferon-induced heli 99.9 1.1E-24 3.7E-29 209.4 14.5 159 203-367 34-216 (216)
80 2hjv_A ATP-dependent RNA helic 99.9 1.4E-23 4.9E-28 193.2 18.4 147 395-553 5-156 (163)
81 1t5i_A C_terminal domain of A 99.9 7.6E-24 2.6E-28 196.9 15.3 155 397-563 3-163 (172)
82 2rb4_A ATP-dependent RNA helic 99.9 1.5E-23 5E-28 195.5 16.8 154 395-559 3-167 (175)
83 1fuk_A Eukaryotic initiation f 99.9 2.6E-24 9E-29 198.6 11.3 157 398-565 2-163 (165)
84 3llm_A ATP-dependent RNA helic 99.9 4.1E-23 1.4E-27 201.9 14.3 164 203-384 62-232 (235)
85 3eaq_A Heat resistant RNA depe 99.9 3.5E-22 1.2E-26 192.1 15.9 145 400-556 6-155 (212)
86 2vl7_A XPD; helicase, unknown 99.9 3.4E-21 1.2E-25 210.7 21.5 122 204-343 9-188 (540)
87 3i32_A Heat resistant RNA depe 99.9 9.2E-22 3.1E-26 198.4 15.4 145 399-555 2-151 (300)
88 1rif_A DAR protein, DNA helica 99.9 6.4E-22 2.2E-26 198.8 13.2 154 203-374 114-268 (282)
89 2yjt_D ATP-dependent RNA helic 99.7 8E-23 2.7E-27 189.6 0.0 148 398-556 2-154 (170)
90 3crv_A XPD/RAD3 related DNA he 99.8 6.5E-19 2.2E-23 193.3 29.6 127 203-344 4-187 (551)
91 2fz4_A DNA repair protein RAD2 99.8 2.3E-18 7.7E-23 168.3 17.2 138 201-370 92-230 (237)
92 4a15_A XPD helicase, ATP-depen 99.7 7E-15 2.4E-19 162.8 27.3 80 203-292 4-88 (620)
93 1z5z_A Helicase of the SNF2/RA 99.5 6.1E-14 2.1E-18 139.4 11.3 130 410-547 94-234 (271)
94 1w36_D RECD, exodeoxyribonucle 99.1 2.2E-10 7.6E-15 126.6 10.2 144 204-367 151-298 (608)
95 3e1s_A Exodeoxyribonuclease V, 98.0 3.3E-05 1.1E-09 84.4 12.8 127 201-366 188-314 (574)
96 2gk6_A Regulator of nonsense t 97.9 7.6E-05 2.6E-09 82.6 14.4 67 203-279 181-247 (624)
97 2xzl_A ATP-dependent helicase 97.8 0.00012 4.1E-09 83.0 14.0 67 203-279 361-427 (802)
98 2wjy_A Regulator of nonsense t 97.8 0.00016 5.5E-09 81.9 14.2 68 202-279 356-423 (800)
99 3lfu_A DNA helicase II; SF1 he 97.7 0.0032 1.1E-07 69.8 22.8 79 203-290 10-91 (647)
100 3upu_A ATP-dependent DNA helic 97.7 0.00016 5.3E-09 77.0 11.5 136 192-365 20-162 (459)
101 4b3f_X DNA-binding protein smu 97.6 0.00016 5.6E-09 80.3 9.8 66 203-279 190-256 (646)
102 2o0j_A Terminase, DNA packagin 97.3 0.0024 8.3E-08 65.8 14.4 141 201-366 162-312 (385)
103 3cpe_A Terminase, DNA packagin 97.0 0.0087 3E-07 65.6 15.7 141 200-365 161-311 (592)
104 3ec2_A DNA replication protein 96.3 0.043 1.5E-06 49.7 12.2 19 216-235 37-55 (180)
105 3vkw_A Replicase large subunit 96.1 0.018 6E-07 60.2 9.5 107 219-367 163-269 (446)
106 2hjv_A ATP-dependent RNA helic 95.1 0.15 5E-06 45.4 10.8 74 256-338 35-111 (163)
107 2b8t_A Thymidine kinase; deoxy 95.0 0.027 9.2E-07 53.4 5.7 111 217-365 12-123 (223)
108 2p6n_A ATP-dependent RNA helic 94.8 0.21 7.3E-06 45.8 11.2 72 256-336 54-128 (191)
109 3te6_A Regulatory protein SIR3 94.7 0.31 1.1E-05 48.6 12.7 41 329-369 131-174 (318)
110 2rb4_A ATP-dependent RNA helic 94.6 0.18 6E-06 45.4 9.9 72 256-336 34-108 (175)
111 3hgt_A HDA1 complex subunit 3; 94.5 0.22 7.5E-06 49.6 11.1 119 410-539 107-237 (328)
112 3eaq_A Heat resistant RNA depe 94.5 0.19 6.5E-06 46.9 10.2 72 256-336 31-105 (212)
113 2orw_A Thymidine kinase; TMTK, 94.5 0.017 6E-07 53.0 2.9 38 217-265 3-40 (184)
114 1xx6_A Thymidine kinase; NESG, 94.4 0.12 4.2E-06 47.5 8.5 106 217-364 8-114 (191)
115 1fuk_A Eukaryotic initiation f 94.3 0.26 8.9E-06 43.8 10.3 74 256-338 30-106 (165)
116 1pjr_A PCRA; DNA repair, DNA r 94.3 0.079 2.7E-06 59.4 8.2 79 203-290 12-93 (724)
117 1uaa_A REP helicase, protein ( 94.0 0.061 2.1E-06 59.8 6.5 79 203-290 3-85 (673)
118 3u4q_A ATP-dependent helicase/ 93.9 0.069 2.4E-06 63.6 7.1 71 201-278 9-79 (1232)
119 1t5i_A C_terminal domain of A 93.8 0.23 7.8E-06 44.6 8.9 74 256-338 31-107 (172)
120 3kl4_A SRP54, signal recogniti 93.7 0.52 1.8E-05 49.1 12.5 52 329-380 178-235 (433)
121 3bos_A Putative DNA replicatio 93.7 0.062 2.1E-06 50.6 5.1 18 216-234 51-68 (242)
122 2j9r_A Thymidine kinase; TK1, 93.5 0.14 4.9E-06 47.9 7.0 39 217-266 28-66 (214)
123 1l8q_A Chromosomal replication 93.4 0.48 1.6E-05 47.1 11.4 17 217-234 37-53 (324)
124 2chg_A Replication factor C sm 93.0 0.67 2.3E-05 42.4 11.1 37 329-365 101-139 (226)
125 1a5t_A Delta prime, HOLB; zinc 92.9 0.18 6.2E-06 50.7 7.4 39 204-244 4-49 (334)
126 2zpa_A Uncharacterized protein 92.9 0.27 9.2E-06 53.9 9.1 114 202-370 175-290 (671)
127 3e2i_A Thymidine kinase; Zn-bi 92.7 0.22 7.7E-06 46.5 7.1 40 216-266 27-66 (219)
128 3i5x_A ATP-dependent RNA helic 92.7 1.1 3.7E-05 48.3 13.7 79 255-339 338-419 (563)
129 2kjq_A DNAA-related protein; s 92.3 0.064 2.2E-06 47.2 2.7 54 329-382 82-142 (149)
130 3dm5_A SRP54, signal recogniti 92.3 0.75 2.6E-05 48.0 11.2 50 331-380 183-236 (443)
131 3i32_A Heat resistant RNA depe 92.3 0.53 1.8E-05 46.5 9.7 72 256-336 28-102 (300)
132 2z4s_A Chromosomal replication 92.3 0.78 2.7E-05 47.9 11.5 37 330-366 194-235 (440)
133 3sqw_A ATP-dependent RNA helic 91.9 1.6 5.4E-05 47.2 13.8 79 255-339 287-368 (579)
134 2v1u_A Cell division control p 91.8 1.4 4.9E-05 44.3 12.7 17 217-234 44-60 (387)
135 2jgn_A DBX, DDX3, ATP-dependen 91.5 0.38 1.3E-05 43.8 7.1 72 256-336 46-120 (185)
136 1g5t_A COB(I)alamin adenosyltr 91.5 0.86 2.9E-05 41.9 9.4 130 218-376 29-171 (196)
137 4a1f_A DNAB helicase, replicat 91.4 0.56 1.9E-05 47.2 8.8 36 218-264 47-82 (338)
138 2w58_A DNAI, primosome compone 91.3 1.5 5.2E-05 39.9 11.1 16 218-234 55-70 (202)
139 2qby_B CDC6 homolog 3, cell di 91.2 0.5 1.7E-05 47.9 8.5 16 218-234 46-61 (384)
140 2i4i_A ATP-dependent RNA helic 90.2 1.1 3.9E-05 45.7 10.2 73 255-336 275-350 (417)
141 3pey_A ATP-dependent RNA helic 89.9 3.9 0.00013 41.1 13.8 79 256-343 243-324 (395)
142 3fht_A ATP-dependent RNA helic 89.8 1.3 4.6E-05 45.0 10.3 72 256-336 266-340 (412)
143 1d2n_A N-ethylmaleimide-sensit 89.8 1.4 4.9E-05 42.3 10.0 17 218-235 65-81 (272)
144 2qgz_A Helicase loader, putati 89.6 1.2 4.2E-05 44.0 9.4 18 217-235 152-169 (308)
145 2p65_A Hypothetical protein PF 89.5 2.1 7.1E-05 37.9 10.2 17 217-234 43-59 (187)
146 1iqp_A RFCS; clamp loader, ext 89.3 1.9 6.3E-05 42.4 10.6 36 329-364 109-146 (327)
147 3syl_A Protein CBBX; photosynt 89.1 0.82 2.8E-05 44.8 7.8 18 217-235 67-84 (309)
148 2d7d_A Uvrabc system protein B 88.7 0.99 3.4E-05 49.8 8.7 79 256-343 445-526 (661)
149 1oyw_A RECQ helicase, ATP-depe 88.6 1.6 5.5E-05 46.6 10.1 72 256-336 236-310 (523)
150 2qby_A CDC6 homolog 1, cell di 88.5 1.2 4.2E-05 44.7 8.8 17 217-234 45-61 (386)
151 2j0s_A ATP-dependent RNA helic 88.3 2.2 7.4E-05 43.6 10.6 72 256-336 276-350 (410)
152 1w4r_A Thymidine kinase; type 88.2 0.64 2.2E-05 42.7 5.6 39 216-265 19-57 (195)
153 2v1x_A ATP-dependent DNA helic 88.2 1.2 4.1E-05 48.5 8.8 73 255-336 266-341 (591)
154 2db3_A ATP-dependent RNA helic 88.1 2.2 7.4E-05 44.3 10.5 70 258-336 302-374 (434)
155 1hv8_A Putative ATP-dependent 87.9 1.2 4.2E-05 44.3 8.3 74 255-337 237-313 (367)
156 1c4o_A DNA nucleotide excision 87.6 3.8 0.00013 45.1 12.6 78 256-342 439-519 (664)
157 1s2m_A Putative ATP-dependent 87.5 2 7E-05 43.5 9.8 72 256-336 258-332 (400)
158 1njg_A DNA polymerase III subu 87.5 3.1 0.00011 38.3 10.3 36 329-364 125-162 (250)
159 2r6a_A DNAB helicase, replicat 87.5 1.8 6.3E-05 45.3 9.5 37 217-263 203-239 (454)
160 2yjt_D ATP-dependent RNA helic 87.1 0.12 4E-06 46.4 0.0 73 256-337 30-105 (170)
161 1xti_A Probable ATP-dependent 86.8 1.7 5.8E-05 43.9 8.6 75 256-339 250-327 (391)
162 1yks_A Genome polyprotein [con 86.8 0.8 2.7E-05 47.8 6.2 70 256-336 177-246 (440)
163 1fnn_A CDC6P, cell division co 86.6 1.2 4.2E-05 44.9 7.5 15 219-234 46-60 (389)
164 1sxj_D Activator 1 41 kDa subu 86.3 1.8 6.1E-05 43.1 8.4 36 330-365 133-170 (353)
165 3pfi_A Holliday junction ATP-d 85.8 1.8 6.3E-05 42.9 8.1 16 218-234 56-71 (338)
166 2orv_A Thymidine kinase; TP4A 85.7 1.7 5.9E-05 40.9 7.3 40 216-266 18-57 (234)
167 1sxj_B Activator 1 37 kDa subu 85.6 2.3 7.8E-05 41.6 8.7 36 330-365 107-144 (323)
168 3bh0_A DNAB-like replicative h 85.6 1.5 5.2E-05 43.5 7.3 36 217-263 68-103 (315)
169 1hqc_A RUVB; extended AAA-ATPa 84.3 2.1 7.3E-05 42.1 7.7 16 218-234 39-54 (324)
170 2q6t_A DNAB replication FORK h 84.1 4.2 0.00014 42.3 10.2 38 217-264 200-237 (444)
171 3u61_B DNA polymerase accessor 84.0 1.5 5.1E-05 43.4 6.4 37 329-365 104-143 (324)
172 1sxj_C Activator 1 40 kDa subu 83.5 1.8 6.3E-05 43.1 6.9 37 329-365 109-147 (340)
173 1wp9_A ATP-dependent RNA helic 83.5 3.3 0.00011 42.6 9.2 76 255-339 360-446 (494)
174 2wv9_A Flavivirin protease NS2 83.4 2.6 8.9E-05 46.5 8.6 70 256-336 410-479 (673)
175 3hjh_A Transcription-repair-co 82.6 6.2 0.00021 41.5 10.8 87 216-318 13-114 (483)
176 2v6i_A RNA helicase; membrane, 82.5 1.8 6.3E-05 44.9 6.6 68 256-334 171-238 (431)
177 3vfd_A Spastin; ATPase, microt 82.4 4.4 0.00015 41.2 9.4 18 217-235 148-165 (389)
178 2px0_A Flagellar biosynthesis 81.9 23 0.00077 34.5 14.0 52 314-369 170-225 (296)
179 2gno_A DNA polymerase III, gam 81.6 3.2 0.00011 40.9 7.6 41 328-369 80-122 (305)
180 1sxj_A Activator 1 95 kDa subu 81.0 2.2 7.5E-05 45.5 6.7 38 329-368 147-189 (516)
181 2l8b_A Protein TRAI, DNA helic 80.9 1.8 6.1E-05 39.2 4.9 123 201-367 33-158 (189)
182 3rc3_A ATP-dependent RNA helic 80.6 4.1 0.00014 44.9 8.8 75 258-342 322-401 (677)
183 2oca_A DAR protein, ATP-depend 80.3 12 0.00042 39.2 12.4 77 256-340 347-426 (510)
184 4b4t_J 26S protease regulatory 80.1 11 0.00037 38.7 11.1 16 218-234 183-198 (405)
185 2jlq_A Serine protease subunit 79.7 3.9 0.00013 42.7 8.0 69 256-335 188-256 (451)
186 3eiq_A Eukaryotic initiation f 79.1 1.9 6.3E-05 44.0 5.2 72 256-336 280-354 (414)
187 2eyq_A TRCF, transcription-rep 79.0 2.1 7.2E-05 50.4 6.2 93 255-355 811-906 (1151)
188 2z43_A DNA repair and recombin 78.3 4 0.00014 40.5 7.2 58 217-279 107-165 (324)
189 2zan_A Vacuolar protein sortin 77.9 6.3 0.00022 41.0 8.9 18 217-235 167-184 (444)
190 1e9r_A Conjugal transfer prote 77.8 2 6.9E-05 44.6 5.0 44 216-270 52-95 (437)
191 2xau_A PRE-mRNA-splicing facto 77.7 7.3 0.00025 43.7 9.9 75 256-336 303-393 (773)
192 2whx_A Serine protease/ntpase/ 76.8 5.4 0.00019 43.5 8.3 69 256-335 355-423 (618)
193 3o8b_A HCV NS3 protease/helica 76.2 3.9 0.00013 44.8 6.9 67 255-335 395-461 (666)
194 3pvs_A Replication-associated 76.0 4.7 0.00016 42.1 7.2 16 218-234 51-66 (447)
195 3hu3_A Transitional endoplasmi 75.2 4.1 0.00014 43.0 6.6 39 332-370 299-350 (489)
196 1jr3_A DNA polymerase III subu 75.0 13 0.00045 36.9 10.2 38 329-367 118-157 (373)
197 3oiy_A Reverse gyrase helicase 74.9 3.7 0.00013 42.0 6.1 72 256-339 252-329 (414)
198 1vma_A Cell division protein F 73.5 28 0.00095 34.1 11.8 18 217-235 104-121 (306)
199 1w5s_A Origin recognition comp 73.3 8.3 0.00028 39.0 8.3 16 218-234 51-68 (412)
200 3m6a_A ATP-dependent protease 72.9 5.6 0.00019 42.6 7.0 18 216-234 107-124 (543)
201 3fho_A ATP-dependent RNA helic 71.9 4.2 0.00014 43.1 5.8 120 256-384 357-487 (508)
202 2z0m_A 337AA long hypothetical 71.9 7.6 0.00026 37.9 7.4 71 255-338 219-292 (337)
203 4gl2_A Interferon-induced heli 71.7 2.5 8.4E-05 46.7 4.0 75 256-336 400-488 (699)
204 3tbk_A RIG-I helicase domain; 70.6 9.4 0.00032 40.3 8.2 75 256-336 389-476 (555)
205 3co5_A Putative two-component 69.0 3.4 0.00012 35.4 3.5 20 214-234 24-43 (143)
206 2yhs_A FTSY, cell division pro 68.6 1.1E+02 0.0036 32.2 15.3 52 330-381 375-436 (503)
207 3e70_C DPA, signal recognition 68.2 19 0.00066 35.6 9.4 50 331-380 212-265 (328)
208 3n70_A Transport activator; si 68.2 3.7 0.00013 35.2 3.6 20 215-235 22-41 (145)
209 2j37_W Signal recognition part 67.5 20 0.0007 37.8 9.8 17 218-235 102-118 (504)
210 1z5z_A Helicase of the SNF2/RA 66.9 26 0.00088 33.6 9.7 95 225-338 92-191 (271)
211 2ffh_A Protein (FFH); SRP54, s 66.1 69 0.0023 32.9 13.2 18 217-235 98-115 (425)
212 3fmp_B ATP-dependent RNA helic 66.0 1.2 4.2E-05 46.7 0.0 71 256-335 333-406 (479)
213 4a2p_A RIG-I, retinoic acid in 65.8 11 0.00038 39.7 7.6 76 255-336 389-477 (556)
214 2ykg_A Probable ATP-dependent 65.7 6.5 0.00022 43.2 5.8 78 255-338 397-487 (696)
215 2z83_A Helicase/nucleoside tri 65.2 5 0.00017 42.0 4.5 69 256-335 190-258 (459)
216 3hr8_A Protein RECA; alpha and 65.1 3.6 0.00012 41.5 3.3 38 217-265 61-98 (356)
217 2dr3_A UPF0273 protein PH0284; 62.6 6.2 0.00021 36.7 4.3 52 216-279 22-73 (247)
218 3dmq_A RNA polymerase-associat 62.5 13 0.00046 42.7 7.8 91 255-355 502-597 (968)
219 1ls1_A Signal recognition part 62.0 64 0.0022 31.2 11.7 50 329-378 179-232 (295)
220 1gku_B Reverse gyrase, TOP-RG; 61.9 11 0.00039 43.7 7.1 73 256-340 275-352 (1054)
221 3mm4_A Histidine kinase homolo 61.7 82 0.0028 28.1 11.8 129 212-368 15-161 (206)
222 4a2q_A RIG-I, retinoic acid in 61.7 12 0.00041 42.0 7.1 77 255-337 630-719 (797)
223 2va8_A SSO2462, SKI2-type heli 61.4 20 0.00068 39.6 8.8 75 256-336 252-362 (715)
224 3cmu_A Protein RECA, recombina 60.2 13 0.00044 46.0 7.2 44 211-265 1415-1464(2050)
225 2i1q_A DNA repair and recombin 60.1 12 0.0004 36.8 6.0 17 217-234 98-114 (322)
226 2zts_A Putative uncharacterize 60.0 5.7 0.0002 37.0 3.5 22 217-240 30-51 (251)
227 4ddu_A Reverse gyrase; topoiso 59.4 10 0.00035 44.3 6.1 74 256-341 309-388 (1104)
228 3h75_A Periplasmic sugar-bindi 56.0 1.5E+02 0.0051 28.7 16.6 26 434-459 205-230 (350)
229 1fuu_A Yeast initiation factor 55.4 2.5 8.4E-05 42.6 0.0 72 256-336 259-333 (394)
230 2v3c_C SRP54, signal recogniti 55.3 22 0.00077 36.7 7.3 17 218-235 100-116 (432)
231 3cmu_A Protein RECA, recombina 55.2 19 0.00063 44.6 7.5 46 216-273 1080-1125(2050)
232 3gk5_A Uncharacterized rhodane 54.3 13 0.00044 30.0 4.3 34 433-467 55-88 (108)
233 3iwh_A Rhodanese-like domain p 53.5 12 0.0004 30.2 3.8 31 433-463 56-86 (103)
234 3h1t_A Type I site-specific re 53.4 30 0.001 37.1 8.3 79 255-339 438-526 (590)
235 2zj8_A DNA helicase, putative 53.0 26 0.00089 38.7 7.9 76 256-338 237-345 (720)
236 2w00_A HSDR, R.ECOR124I; ATP-b 52.9 62 0.0021 37.4 11.1 26 255-280 536-561 (1038)
237 3dmn_A Putative DNA helicase; 52.8 1.2E+02 0.004 26.5 11.0 87 404-509 37-123 (174)
238 1qvr_A CLPB protein; coiled co 52.8 23 0.00077 40.1 7.4 16 219-235 590-605 (854)
239 1t6n_A Probable ATP-dependent 52.5 55 0.0019 29.5 8.9 72 433-506 82-164 (220)
240 2p6r_A Afuhel308 helicase; pro 51.5 18 0.00062 39.8 6.3 75 256-336 242-346 (702)
241 3nwn_A Kinesin-like protein KI 51.4 10 0.00035 38.2 3.8 25 210-235 96-122 (359)
242 3eme_A Rhodanese-like domain p 50.9 13 0.00045 29.5 3.8 33 433-466 56-88 (103)
243 3bgw_A DNAB-like replicative h 50.9 13 0.00045 38.6 4.7 37 217-264 197-233 (444)
244 3foj_A Uncharacterized protein 50.7 15 0.0005 29.1 4.0 33 433-466 56-88 (100)
245 3l9o_A ATP-dependent RNA helic 50.6 25 0.00086 41.0 7.5 74 256-335 441-553 (1108)
246 4etp_A Kinesin-like protein KA 50.0 12 0.0004 38.4 4.0 25 210-235 132-158 (403)
247 1qvr_A CLPB protein; coiled co 49.8 1.7E+02 0.0059 32.8 14.2 24 210-234 182-207 (854)
248 2jtq_A Phage shock protein E; 49.4 21 0.00072 27.1 4.6 32 433-464 41-72 (85)
249 4ag6_A VIRB4 ATPase, type IV s 49.2 13 0.00046 37.6 4.4 42 216-268 34-75 (392)
250 3hix_A ALR3790 protein; rhodan 48.8 23 0.00078 28.3 5.0 35 433-467 52-86 (106)
251 4a2w_A RIG-I, retinoic acid in 48.7 22 0.00077 40.7 6.6 79 255-339 630-721 (936)
252 3cf2_A TER ATPase, transitiona 48.0 50 0.0017 37.0 9.0 40 332-371 572-627 (806)
253 2xxa_A Signal recognition part 47.8 1.4E+02 0.0048 30.6 11.9 17 218-235 101-117 (433)
254 3io5_A Recombination and repai 47.5 22 0.00075 35.2 5.4 90 219-343 30-124 (333)
255 1bg2_A Kinesin; motor protein, 47.1 13 0.00046 36.8 3.8 25 210-235 69-95 (325)
256 3u4q_B ATP-dependent helicase/ 46.9 14 0.00049 43.4 4.7 59 403-462 313-372 (1166)
257 2nr8_A Kinesin-like protein KI 46.7 13 0.00046 37.3 3.8 25 210-235 95-121 (358)
258 3dc4_A Kinesin-like protein NO 46.2 13 0.00043 37.3 3.5 25 210-235 86-112 (344)
259 3ber_A Probable ATP-dependent 46.1 80 0.0027 29.3 9.1 92 410-506 90-192 (249)
260 3t0q_A AGR253WP; kinesin, alph 46.1 12 0.0004 37.6 3.2 25 210-235 77-103 (349)
261 1j8m_F SRP54, signal recogniti 46.0 1.9E+02 0.0065 27.8 12.1 17 218-235 99-115 (297)
262 2h58_A Kinesin-like protein KI 45.9 14 0.00049 36.7 3.8 26 209-235 71-98 (330)
263 3gbj_A KIF13B protein; kinesin 45.9 14 0.00049 37.0 3.9 25 210-235 84-110 (354)
264 4a14_A Kinesin, kinesin-like p 45.9 13 0.00046 37.1 3.6 25 210-235 75-101 (344)
265 3p32_A Probable GTPase RV1496/ 45.9 1.1E+02 0.0037 30.3 10.5 16 219-235 81-96 (355)
266 3u06_A Protein claret segregat 45.8 13 0.00043 38.3 3.5 25 210-235 130-156 (412)
267 2r44_A Uncharacterized protein 45.7 14 0.00048 36.3 3.8 25 209-234 38-62 (331)
268 3mwy_W Chromo domain-containin 45.7 91 0.0031 34.8 10.9 92 229-339 555-652 (800)
269 2y65_A Kinesin, kinesin heavy 45.6 14 0.00049 37.2 3.8 25 210-235 76-102 (365)
270 3b6u_A Kinesin-like protein KI 45.2 15 0.0005 37.2 3.8 25 210-235 93-119 (372)
271 1v8k_A Kinesin-like protein KI 45.1 14 0.00049 37.8 3.8 25 210-235 146-172 (410)
272 1wv9_A Rhodanese homolog TT165 45.0 22 0.00074 27.6 4.1 32 434-466 54-85 (94)
273 1x88_A Kinesin-like protein KI 44.8 14 0.00048 37.1 3.6 25 210-235 80-106 (359)
274 3cob_A Kinesin heavy chain-lik 44.8 13 0.00044 37.6 3.3 25 210-235 71-97 (369)
275 3lre_A Kinesin-like protein KI 44.7 15 0.00051 36.9 3.8 25 210-235 97-123 (355)
276 1w36_B RECB, exodeoxyribonucle 44.7 25 0.00086 41.4 6.3 61 216-278 16-78 (1180)
277 1t5c_A CENP-E protein, centrom 44.6 15 0.00052 36.8 3.8 25 210-235 69-95 (349)
278 2vvg_A Kinesin-2; motor protei 44.5 15 0.00052 36.8 3.8 24 211-235 82-107 (350)
279 1f9v_A Kinesin-like protein KA 44.1 12 0.00043 37.4 3.1 25 210-235 76-102 (347)
280 2zfi_A Kinesin-like protein KI 43.9 16 0.00054 36.9 3.8 25 210-235 81-107 (366)
281 1goj_A Kinesin, kinesin heavy 43.9 16 0.00053 36.8 3.8 24 211-235 73-98 (355)
282 4a4z_A Antiviral helicase SKI2 43.9 60 0.002 37.4 9.1 78 256-340 336-452 (997)
283 2bjv_A PSP operon transcriptio 43.8 16 0.00053 34.6 3.7 18 216-234 28-45 (265)
284 2w0m_A SSO2452; RECA, SSPF, un 43.7 18 0.00062 32.9 4.0 18 216-234 22-39 (235)
285 1xp8_A RECA protein, recombina 43.5 18 0.00061 36.5 4.2 38 216-264 73-110 (366)
286 4fn4_A Short chain dehydrogena 43.4 99 0.0034 29.1 9.3 83 215-315 5-93 (254)
287 2wbe_C Bipolar kinesin KRP-130 42.9 15 0.00052 37.1 3.5 25 210-235 92-118 (373)
288 3cf2_A TER ATPase, transitiona 42.7 36 0.0012 38.1 6.8 16 218-234 239-254 (806)
289 3bfn_A Kinesin-like protein KI 42.5 14 0.00049 37.5 3.3 23 212-235 92-116 (388)
290 3cmw_A Protein RECA, recombina 42.5 14 0.00047 45.0 3.5 99 209-344 1417-1523(1706)
291 1z3i_X Similar to RAD54-like; 42.3 1.2E+02 0.0041 32.8 11.0 95 226-339 396-496 (644)
292 2oap_1 GSPE-2, type II secreti 42.1 18 0.00061 38.3 4.1 21 213-234 256-276 (511)
293 3nbx_X ATPase RAVA; AAA+ ATPas 42.0 26 0.00088 37.0 5.3 29 205-234 29-57 (500)
294 2qmh_A HPR kinase/phosphorylas 41.7 11 0.00039 34.5 2.1 18 216-234 33-50 (205)
295 1cr0_A DNA primase/helicase; R 41.7 22 0.00075 34.2 4.5 18 216-234 34-51 (296)
296 2heh_A KIF2C protein; kinesin, 41.5 17 0.00059 36.9 3.6 25 210-235 126-152 (387)
297 2lci_A Protein OR36; structura 41.4 1.2E+02 0.004 23.7 7.5 53 421-476 42-94 (134)
298 3g5j_A Putative ATP/GTP bindin 41.4 46 0.0016 27.3 6.0 35 434-469 90-125 (134)
299 3jvv_A Twitching mobility prot 40.9 25 0.00086 35.2 4.8 18 216-234 122-139 (356)
300 1gmx_A GLPE protein; transfera 40.8 25 0.00085 28.1 4.0 35 433-468 58-93 (108)
301 1jbk_A CLPB protein; beta barr 40.5 12 0.00042 32.6 2.2 16 218-234 44-59 (195)
302 1p9r_A General secretion pathw 40.4 28 0.00095 35.8 5.1 17 217-234 167-183 (418)
303 3b9q_A Chloroplast SRP recepto 39.9 1.5E+02 0.005 28.7 10.2 19 216-235 99-117 (302)
304 1q57_A DNA primase/helicase; d 39.8 22 0.00077 37.3 4.5 38 217-264 242-279 (503)
305 2rep_A Kinesin-like protein KI 39.8 17 0.00058 36.8 3.3 25 210-235 107-133 (376)
306 2r2a_A Uncharacterized protein 39.5 15 0.00053 33.4 2.7 33 333-365 90-130 (199)
307 2k0z_A Uncharacterized protein 39.5 31 0.0011 27.7 4.4 34 433-467 56-89 (110)
308 1u94_A RECA protein, recombina 39.5 22 0.00074 35.7 4.1 38 216-264 62-99 (356)
309 2owm_A Nckin3-434, related to 39.0 20 0.0007 37.1 3.8 25 210-235 128-154 (443)
310 1tue_A Replication protein E1; 38.6 39 0.0013 31.1 5.2 32 208-241 45-80 (212)
311 2xgj_A ATP-dependent RNA helic 38.4 62 0.0021 37.3 8.2 77 256-339 343-458 (1010)
312 3flh_A Uncharacterized protein 38.2 21 0.00073 29.4 3.2 34 433-467 71-106 (124)
313 3ilm_A ALR3790 protein; rhodan 38.1 37 0.0013 28.7 4.9 35 433-467 56-90 (141)
314 2gza_A Type IV secretion syste 38.0 18 0.00062 36.3 3.2 21 213-234 171-191 (361)
315 2og2_A Putative signal recogni 37.4 1.6E+02 0.0055 29.3 10.1 18 217-235 157-174 (359)
316 3g1w_A Sugar ABC transporter; 37.4 2.6E+02 0.0088 26.1 19.2 42 434-475 187-230 (305)
317 3dbi_A Sugar-binding transcrip 37.3 2.8E+02 0.0095 26.5 12.0 28 433-460 241-268 (338)
318 2q5c_A NTRC family transcripti 37.3 69 0.0023 28.9 6.8 63 256-323 4-67 (196)
319 2oxc_A Probable ATP-dependent 37.3 1.2E+02 0.004 27.6 8.6 94 406-506 67-172 (230)
320 2fsx_A RV0390, COG0607: rhodan 36.7 33 0.0011 29.2 4.3 31 433-463 80-111 (148)
321 1qxn_A SUD, sulfide dehydrogen 36.5 36 0.0012 28.6 4.5 35 433-468 82-117 (137)
322 1kgd_A CASK, peripheral plasma 36.2 16 0.00054 32.4 2.2 18 216-234 4-21 (180)
323 3sju_A Keto reductase; short-c 36.0 1.3E+02 0.0043 28.4 8.9 86 212-315 19-110 (279)
324 2zr9_A Protein RECA, recombina 36.0 28 0.00094 34.8 4.2 38 216-264 60-97 (349)
325 3d1p_A Putative thiosulfate su 36.0 38 0.0013 28.4 4.5 35 433-467 91-125 (139)
326 1tq1_A AT5G66040, senescence-a 35.8 30 0.001 28.7 3.8 35 433-468 82-117 (129)
327 3hws_A ATP-dependent CLP prote 35.8 26 0.00089 34.9 4.0 19 216-235 50-68 (363)
328 3co5_A Putative two-component 35.6 38 0.0013 28.5 4.5 35 332-366 77-114 (143)
329 1ojl_A Transcriptional regulat 35.5 22 0.00074 34.7 3.3 18 216-234 24-41 (304)
330 1xjc_A MOBB protein homolog; s 35.4 38 0.0013 29.9 4.5 14 220-234 7-20 (169)
331 3nhv_A BH2092 protein; alpha-b 34.9 34 0.0012 29.1 4.0 34 433-467 72-107 (144)
332 3bor_A Human initiation factor 34.8 92 0.0031 28.5 7.5 97 406-506 73-179 (237)
333 2pt7_A CAG-ALFA; ATPase, prote 34.8 20 0.0007 35.4 3.0 20 214-234 168-187 (330)
334 3qiv_A Short-chain dehydrogena 34.7 1.7E+02 0.0059 26.7 9.5 83 215-315 7-95 (253)
335 1sxj_E Activator 1 40 kDa subu 34.7 29 0.00099 34.2 4.1 39 328-367 132-173 (354)
336 3t15_A Ribulose bisphosphate c 34.3 23 0.0008 34.2 3.3 16 218-234 37-52 (293)
337 3kta_B Chromosome segregation 34.1 31 0.0011 30.6 3.8 37 330-366 86-125 (173)
338 4b4t_K 26S protease regulatory 33.9 59 0.002 33.4 6.3 16 218-234 207-222 (428)
339 1tf5_A Preprotein translocase 33.7 1.1E+02 0.0038 34.2 8.9 54 256-313 432-487 (844)
340 2fwr_A DNA repair protein RAD2 33.1 18 0.00061 37.5 2.3 71 255-339 348-421 (472)
341 3tfo_A Putative 3-oxoacyl-(acy 33.1 1.3E+02 0.0043 28.3 8.2 83 215-315 2-90 (264)
342 1ofh_A ATP-dependent HSL prote 32.8 49 0.0017 31.6 5.4 18 216-234 49-66 (310)
343 3gaf_A 7-alpha-hydroxysteroid 32.8 1.6E+02 0.0056 27.1 9.0 83 215-315 10-98 (256)
344 2eyu_A Twitching motility prot 32.4 17 0.00059 34.6 1.9 20 215-235 23-42 (261)
345 3iij_A Coilin-interacting nucl 32.1 14 0.00047 32.6 1.1 19 215-234 9-27 (180)
346 3d3q_A TRNA delta(2)-isopenten 32.1 24 0.00081 35.2 2.9 15 219-234 9-23 (340)
347 4b4t_M 26S protease regulatory 32.0 24 0.00083 36.4 3.0 16 218-234 216-231 (434)
348 3tjr_A Short chain dehydrogena 31.9 1.6E+02 0.0055 28.1 9.0 83 215-315 29-117 (301)
349 3rkr_A Short chain oxidoreduct 31.9 1.4E+02 0.0047 27.8 8.3 83 215-315 27-115 (262)
350 3exa_A TRNA delta(2)-isopenten 31.7 20 0.00067 35.4 2.2 15 219-234 5-19 (322)
351 3svt_A Short-chain type dehydr 31.6 2E+02 0.0068 26.9 9.5 86 215-315 9-100 (281)
352 3uk6_A RUVB-like 2; hexameric 31.6 20 0.00067 35.7 2.2 17 217-234 70-86 (368)
353 3eph_A TRNA isopentenyltransfe 31.4 28 0.00094 35.6 3.3 14 220-234 5-18 (409)
354 2hhg_A Hypothetical protein RP 31.3 38 0.0013 28.3 3.7 34 433-467 86-120 (139)
355 3foz_A TRNA delta(2)-isopenten 31.2 20 0.0007 35.2 2.2 14 220-234 13-26 (316)
356 3ucx_A Short chain dehydrogena 31.1 2.1E+02 0.0071 26.5 9.5 84 214-315 8-97 (264)
357 3cf0_A Transitional endoplasmi 31.1 19 0.00066 34.9 2.1 19 216-235 48-66 (301)
358 3vaa_A Shikimate kinase, SK; s 31.1 22 0.00075 31.9 2.3 18 216-234 24-41 (199)
359 2ius_A DNA translocase FTSK; n 30.9 51 0.0018 34.7 5.4 19 216-235 166-184 (512)
360 3lwd_A 6-phosphogluconolactona 30.9 73 0.0025 29.5 5.9 28 313-340 44-71 (226)
361 3b9p_A CG5977-PA, isoform A; A 30.6 20 0.00067 34.5 2.0 17 217-234 54-70 (297)
362 1lvg_A Guanylate kinase, GMP k 30.6 25 0.00087 31.6 2.6 19 216-235 3-21 (198)
363 2qz4_A Paraplegin; AAA+, SPG7, 30.6 21 0.00072 33.3 2.2 17 217-234 39-55 (262)
364 3b85_A Phosphate starvation-in 30.5 38 0.0013 30.9 3.9 31 204-235 9-39 (208)
365 1ex7_A Guanylate kinase; subst 30.5 23 0.00079 31.9 2.3 16 218-234 2-17 (186)
366 1z63_A Helicase of the SNF2/RA 30.5 1.2E+02 0.004 31.3 8.2 77 256-340 341-422 (500)
367 1v5w_A DMC1, meiotic recombina 30.4 33 0.0011 34.0 3.7 50 211-265 111-165 (343)
368 3h4m_A Proteasome-activating n 30.3 20 0.00069 34.1 2.0 18 216-234 50-67 (285)
369 2ae2_A Protein (tropinone redu 30.2 2.2E+02 0.0074 26.3 9.4 83 215-315 7-96 (260)
370 1ae1_A Tropinone reductase-I; 30.1 1.9E+02 0.0066 26.9 9.1 83 215-315 19-108 (273)
371 4akg_A Glutathione S-transfera 29.8 48 0.0016 42.4 5.6 47 183-236 891-941 (2695)
372 2qor_A Guanylate kinase; phosp 29.7 22 0.00074 32.1 2.0 20 214-234 9-28 (204)
373 2jah_A Clavulanic acid dehydro 29.5 2.2E+02 0.0075 26.0 9.2 83 215-315 5-93 (247)
374 1u0j_A DNA replication protein 29.2 45 0.0015 31.9 4.2 44 184-236 73-122 (267)
375 3vkg_A Dynein heavy chain, cyt 29.1 51 0.0018 42.7 5.7 48 182-236 873-924 (3245)
376 4h1g_A Maltose binding protein 29.0 33 0.0011 37.9 3.6 25 210-235 454-480 (715)
377 1vec_A ATP-dependent RNA helic 29.0 1.9E+02 0.0066 25.2 8.5 71 433-506 71-152 (206)
378 3trf_A Shikimate kinase, SK; a 29.0 23 0.00078 31.1 2.0 18 217-235 5-22 (185)
379 1q0u_A Bstdead; DEAD protein, 28.9 1.3E+02 0.0045 26.8 7.4 50 404-456 45-95 (219)
380 4g81_D Putative hexonate dehyd 28.9 1.4E+02 0.0046 28.2 7.6 83 215-315 7-95 (255)
381 1ry6_A Internal kinesin; kines 28.8 34 0.0012 34.3 3.4 19 216-235 82-102 (360)
382 3ney_A 55 kDa erythrocyte memb 28.8 22 0.00074 32.4 1.8 19 215-234 17-35 (197)
383 3a8t_A Adenylate isopentenyltr 28.8 23 0.0008 35.2 2.2 16 218-234 41-56 (339)
384 4e3z_A Putative oxidoreductase 28.5 1.7E+02 0.0058 27.2 8.4 85 213-315 22-113 (272)
385 4b4t_I 26S protease regulatory 28.4 82 0.0028 32.4 6.2 16 218-234 217-232 (437)
386 4b4t_H 26S protease regulatory 28.2 51 0.0018 34.2 4.7 16 218-234 244-259 (467)
387 1vee_A Proline-rich protein fa 28.1 38 0.0013 28.3 3.2 31 433-463 74-105 (134)
388 1yb1_A 17-beta-hydroxysteroid 28.0 2.1E+02 0.0073 26.5 9.0 83 215-315 29-117 (272)
389 3tau_A Guanylate kinase, GMP k 28.0 26 0.0009 31.7 2.3 18 216-234 7-24 (208)
390 4b4t_L 26S protease subunit RP 27.9 31 0.0011 35.6 3.0 16 218-234 216-231 (437)
391 1gm5_A RECG; helicase, replica 27.9 1.3E+02 0.0046 33.4 8.4 70 433-505 417-495 (780)
392 1lv7_A FTSH; alpha/beta domain 27.9 24 0.00082 33.1 2.0 16 218-234 46-61 (257)
393 3tox_A Short chain dehydrogena 27.9 1.5E+02 0.0052 27.9 7.9 83 215-315 6-94 (280)
394 3i1j_A Oxidoreductase, short c 27.8 2.4E+02 0.0081 25.6 9.1 87 214-315 11-103 (247)
395 1jr3_D DNA polymerase III, del 27.4 44 0.0015 32.8 4.0 41 328-368 74-117 (343)
396 1qhx_A CPT, protein (chloramph 27.3 26 0.00088 30.5 2.0 17 217-234 3-19 (178)
397 3h11_B Caspase-8; cell death, 27.3 1.2E+02 0.0042 28.8 7.0 46 433-478 17-86 (271)
398 2x8a_A Nuclear valosin-contain 27.2 35 0.0012 32.6 3.1 16 218-234 45-60 (274)
399 3v2g_A 3-oxoacyl-[acyl-carrier 27.1 2.3E+02 0.0078 26.5 9.0 83 215-315 29-118 (271)
400 4iin_A 3-ketoacyl-acyl carrier 27.1 1.7E+02 0.0057 27.3 8.0 83 215-315 27-116 (271)
401 3h7a_A Short chain dehydrogena 26.9 1.3E+02 0.0044 27.8 7.1 83 215-315 5-92 (252)
402 2j41_A Guanylate kinase; GMP, 26.8 27 0.00092 31.2 2.1 19 215-234 4-22 (207)
403 3nyw_A Putative oxidoreductase 26.8 2E+02 0.0069 26.4 8.5 86 215-315 5-96 (250)
404 5nul_A Flavodoxin; electron tr 26.6 2.6E+02 0.0088 22.7 9.1 49 509-558 61-110 (138)
405 3eie_A Vacuolar protein sortin 26.6 26 0.00089 34.3 2.1 17 218-235 52-68 (322)
406 3imf_A Short chain dehydrogena 26.6 1.6E+02 0.0056 27.2 7.7 83 215-315 4-92 (257)
407 2i3b_A HCR-ntpase, human cance 26.5 42 0.0015 30.1 3.4 42 328-369 103-146 (189)
408 1qde_A EIF4A, translation init 26.5 2.3E+02 0.0079 25.1 8.7 96 404-506 55-161 (224)
409 3awd_A GOX2181, putative polyo 26.4 2.4E+02 0.0083 25.7 9.0 83 215-315 11-99 (260)
410 3l77_A Short-chain alcohol deh 26.4 2.8E+02 0.0095 24.9 9.3 82 217-315 2-89 (235)
411 3euj_A Chromosome partition pr 26.3 42 0.0014 35.1 3.7 35 329-365 413-449 (483)
412 3lw7_A Adenylate kinase relate 26.1 26 0.0009 30.0 1.8 14 220-234 4-17 (179)
413 3lhi_A Putative 6-phosphogluco 25.9 73 0.0025 29.6 5.0 27 313-339 45-71 (232)
414 3fe2_A Probable ATP-dependent 25.9 2.1E+02 0.007 26.1 8.3 95 410-506 76-182 (242)
415 3lyl_A 3-oxoacyl-(acyl-carrier 25.8 1.8E+02 0.0063 26.4 7.9 83 215-315 3-91 (247)
416 2ze6_A Isopentenyl transferase 25.8 28 0.00095 32.8 2.0 14 220-234 4-17 (253)
417 4fcw_A Chaperone protein CLPB; 25.8 33 0.0011 33.0 2.6 17 218-235 48-64 (311)
418 4ibo_A Gluconate dehydrogenase 25.3 1.6E+02 0.0056 27.5 7.6 83 215-315 24-112 (271)
419 1y63_A LMAJ004144AAA protein; 25.3 30 0.001 30.6 2.0 18 216-234 9-26 (184)
420 2iut_A DNA translocase FTSK; n 25.3 73 0.0025 34.1 5.3 26 217-244 214-239 (574)
421 4dmm_A 3-oxoacyl-[acyl-carrier 25.2 2E+02 0.0069 26.8 8.2 83 215-315 26-115 (269)
422 2rhc_B Actinorhodin polyketide 25.2 2.6E+02 0.0089 26.1 9.0 83 215-315 20-108 (277)
423 1np6_A Molybdopterin-guanine d 25.1 45 0.0015 29.5 3.2 15 219-234 8-22 (174)
424 1xwi_A SKD1 protein; VPS4B, AA 25.1 28 0.00096 34.2 2.0 16 218-234 46-61 (322)
425 3iuy_A Probable ATP-dependent 24.9 2.8E+02 0.0095 24.7 8.9 72 433-506 94-173 (228)
426 2ewv_A Twitching motility prot 24.9 29 0.00098 35.0 2.1 19 215-234 134-152 (372)
427 1um8_A ATP-dependent CLP prote 24.9 32 0.0011 34.4 2.4 18 217-235 72-89 (376)
428 2qp9_X Vacuolar protein sortin 24.8 32 0.0011 34.3 2.4 18 217-235 84-101 (355)
429 3tr0_A Guanylate kinase, GMP k 24.6 32 0.0011 30.7 2.1 18 216-234 6-23 (205)
430 3u5t_A 3-oxoacyl-[acyl-carrier 24.5 2.2E+02 0.0075 26.5 8.3 83 215-315 25-114 (267)
431 2gxq_A Heat resistant RNA depe 24.5 2.6E+02 0.0088 24.3 8.5 100 405-506 43-150 (207)
432 3ftp_A 3-oxoacyl-[acyl-carrier 24.4 1.8E+02 0.006 27.3 7.6 83 215-315 26-114 (270)
433 1z6g_A Guanylate kinase; struc 24.4 36 0.0012 31.2 2.5 18 216-234 22-39 (218)
434 3r3s_A Oxidoreductase; structu 24.1 2.9E+02 0.01 26.0 9.3 83 215-315 47-137 (294)
435 3v8b_A Putative dehydrogenase, 24.0 2.9E+02 0.01 25.9 9.2 83 215-315 26-114 (283)
436 3nwp_A 6-phosphogluconolactona 23.9 1E+02 0.0036 28.6 5.6 27 313-339 48-74 (233)
437 2chq_A Replication factor C sm 23.8 40 0.0014 32.3 2.9 15 219-234 40-54 (319)
438 2c9o_A RUVB-like 1; hexameric 23.8 32 0.0011 35.6 2.2 18 217-235 63-80 (456)
439 3osu_A 3-oxoacyl-[acyl-carrier 23.5 2E+02 0.0067 26.3 7.6 83 215-315 2-91 (246)
440 3sx2_A Putative 3-ketoacyl-(ac 23.5 3.1E+02 0.01 25.4 9.2 83 215-315 11-111 (278)
441 1s96_A Guanylate kinase, GMP k 23.4 36 0.0012 31.4 2.3 21 214-235 13-33 (219)
442 1kht_A Adenylate kinase; phosp 23.3 34 0.0012 30.0 2.0 17 217-234 3-19 (192)
443 3d8b_A Fidgetin-like protein 1 23.2 32 0.0011 34.2 2.1 18 217-235 117-134 (357)
444 1kag_A SKI, shikimate kinase I 23.1 39 0.0013 29.1 2.4 17 217-234 4-20 (173)
445 1zp6_A Hypothetical protein AT 23.1 27 0.00093 30.8 1.3 18 216-234 8-25 (191)
446 3t7c_A Carveol dehydrogenase; 23.0 3.1E+02 0.011 25.9 9.2 83 215-315 26-126 (299)
447 3f6r_A Flavodoxin; FMN binding 22.9 1.6E+02 0.0056 24.4 6.4 47 508-557 66-118 (148)
448 3tnl_A Shikimate dehydrogenase 22.9 2.8E+02 0.0097 26.9 8.8 47 216-278 153-203 (315)
449 3nwj_A ATSK2; P loop, shikimat 22.8 42 0.0014 31.7 2.7 22 213-235 44-65 (250)
450 1vl8_A Gluconate 5-dehydrogena 22.7 3.1E+02 0.011 25.3 9.0 83 215-315 19-108 (267)
451 3r1i_A Short-chain type dehydr 22.6 1.6E+02 0.0054 27.8 6.8 83 215-315 30-118 (276)
452 1gee_A Glucose 1-dehydrogenase 22.6 2.8E+02 0.0097 25.2 8.7 83 215-315 5-94 (261)
453 1m7g_A Adenylylsulfate kinase; 22.6 50 0.0017 29.8 3.1 29 204-234 13-41 (211)
454 2fp3_A Caspase NC; apoptosis, 22.5 1.7E+02 0.0059 28.5 7.1 82 433-517 61-161 (316)
455 3a00_A Guanylate kinase, GMP k 22.4 39 0.0013 29.8 2.3 16 218-234 2-17 (186)
456 3n70_A Transport activator; si 22.3 54 0.0018 27.6 3.0 33 332-364 78-112 (145)
457 3ksu_A 3-oxoacyl-acyl carrier 22.2 1.4E+02 0.0047 27.9 6.3 83 215-315 9-100 (262)
458 1y89_A DEVB protein; structura 22.2 1.1E+02 0.0038 28.3 5.5 62 260-340 4-71 (238)
459 1zem_A Xylitol dehydrogenase; 22.0 3.5E+02 0.012 24.8 9.1 83 215-315 5-93 (262)
460 1ixz_A ATP-dependent metallopr 21.9 36 0.0012 31.7 2.0 16 218-234 50-65 (254)
461 3uf0_A Short-chain dehydrogena 21.9 2.4E+02 0.0082 26.3 8.0 82 215-315 29-115 (273)
462 3kb2_A SPBC2 prophage-derived 21.7 35 0.0012 29.2 1.8 15 219-234 3-17 (173)
463 3crm_A TRNA delta(2)-isopenten 21.7 38 0.0013 33.4 2.2 15 219-234 7-21 (323)
464 2r8r_A Sensor protein; KDPD, P 21.6 87 0.003 29.1 4.5 55 330-384 84-144 (228)
465 3tqf_A HPR(Ser) kinase; transf 21.4 41 0.0014 30.1 2.1 18 216-234 15-32 (181)
466 1xg5_A ARPG836; short chain de 21.4 4.3E+02 0.015 24.4 9.8 85 215-315 30-120 (279)
467 2b4q_A Rhamnolipids biosynthes 21.4 3.3E+02 0.011 25.4 8.9 82 215-315 27-114 (276)
468 3pxx_A Carveol dehydrogenase; 21.4 3.5E+02 0.012 25.1 9.1 83 215-315 8-108 (287)
469 3eb9_A 6-phosphogluconolactona 21.3 86 0.003 29.8 4.6 65 257-340 5-78 (266)
470 3cg0_A Response regulator rece 21.3 3.1E+02 0.01 21.7 11.0 85 255-370 8-94 (140)
471 3miz_A Putative transcriptiona 21.2 4.5E+02 0.015 24.3 10.0 28 433-460 196-223 (301)
472 1znw_A Guanylate kinase, GMP k 21.2 42 0.0014 30.2 2.3 22 213-235 16-37 (207)
473 1ly1_A Polynucleotide kinase; 21.2 40 0.0014 29.1 2.0 14 220-234 5-18 (181)
474 3edm_A Short chain dehydrogena 21.0 1.9E+02 0.0066 26.7 7.0 83 215-315 6-95 (259)
475 3pk0_A Short-chain dehydrogena 20.8 2.6E+02 0.0091 25.8 8.0 84 215-315 8-97 (262)
476 3oid_A Enoyl-[acyl-carrier-pro 20.8 1.8E+02 0.0063 26.9 6.9 82 216-315 3-91 (258)
477 2ehv_A Hypothetical protein PH 20.7 1E+02 0.0034 28.1 4.9 19 216-235 29-47 (251)
478 1g8p_A Magnesium-chelatase 38 20.7 27 0.00094 34.2 0.9 17 217-234 45-61 (350)
479 2cvh_A DNA repair and recombin 20.6 45 0.0016 29.9 2.4 15 330-344 105-119 (220)
480 3jzl_A Putative cystathionine 20.6 3.2E+02 0.011 27.4 9.1 11 333-343 197-207 (409)
481 2uvd_A 3-oxoacyl-(acyl-carrier 20.5 2.8E+02 0.0095 25.2 8.0 82 216-315 3-91 (246)
482 4eun_A Thermoresistant glucoki 20.5 45 0.0015 29.8 2.3 18 216-234 28-45 (200)
483 4da9_A Short-chain dehydrogena 20.4 2.5E+02 0.0086 26.3 7.8 83 216-316 28-117 (280)
484 3pgx_A Carveol dehydrogenase; 20.4 3.9E+02 0.013 24.8 9.2 83 215-315 13-114 (280)
485 3g85_A Transcriptional regulat 20.4 4.9E+02 0.017 23.7 11.4 37 419-459 177-213 (289)
486 1uaa_A REP helicase, protein ( 20.3 6.1E+02 0.021 27.1 11.9 57 404-462 314-371 (673)
487 2bd0_A Sepiapterin reductase; 20.3 4.5E+02 0.015 23.5 9.4 88 217-315 2-95 (244)
488 3bs4_A Uncharacterized protein 20.3 72 0.0025 30.3 3.7 52 216-279 20-71 (260)
489 3rwb_A TPLDH, pyridoxal 4-dehy 20.3 3.7E+02 0.012 24.5 8.8 80 215-315 4-89 (247)
490 3tsc_A Putative oxidoreductase 20.3 4E+02 0.014 24.7 9.2 83 215-315 9-110 (277)
491 2c07_A 3-oxoacyl-(acyl-carrier 20.2 2.7E+02 0.0091 26.0 8.0 83 215-315 42-130 (285)
492 1bvy_F Protein (cytochrome P45 20.2 4.5E+02 0.015 23.2 10.5 52 507-558 80-138 (191)
493 3f9v_A Minichromosome maintena 20.1 46 0.0016 35.9 2.5 15 219-234 329-343 (595)
494 3jux_A Protein translocase sub 20.0 92 0.0031 34.5 4.8 55 256-314 474-530 (822)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.7e-63 Score=533.14 Aligned_cols=382 Identities=16% Similarity=0.213 Sum_probs=333.1
Q ss_pred ccceEEccCCCCCCCCCCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCch
Q 008235 150 RAEVHLNGKSCANGHHGQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSST 229 (573)
Q Consensus 150 ~~~i~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~S 229 (573)
...+.+.|.+.|.+ ..+|++.++++.+ ++ ++...||.+| ||+|.++||.+++|+|++++|||| |
T Consensus 41 ~~~~~~~~~~~p~~--~~~f~~~~l~~~l----~~----~l~~~g~~~p-----t~iQ~~ai~~i~~g~d~i~~a~TG-s 104 (434)
T 2db3_A 41 NIPVKVTGSDVPQP--IQHFTSADLRDII----ID----NVNKSGYKIP-----TPIQKCSIPVISSGRDLMACAQTG-S 104 (434)
T ss_dssp GSCEEEESSSCCCC--CCCGGGSCCCHHH----HH----HHHHTTCCSC-----CHHHHHHHHHHHTTCCEEEECCTT-S
T ss_pred CceeEecCCCCCCC--cCChhhcCCCHHH----HH----HHHHcCCCCC-----CHHHHHHHHHHhcCCCEEEECCCC-C
Confidence 34577888888766 6678888877766 44 4556899999 999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCHHHHHHHhhcCCCc
Q 008235 230 IVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPE 308 (573)
Q Consensus 230 GKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~ 308 (573)
|||++|++|++.++....... ...++++|||+||||||.|+++.++.+.. .++++++++||.....+...+.. +++
T Consensus 105 GKT~a~~lpil~~l~~~~~~~--~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~ 181 (434)
T 2db3_A 105 GKTAAFLLPILSKLLEDPHEL--ELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR-GCH 181 (434)
T ss_dssp SHHHHHHHHHHHHHHHSCCCC--CTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTT-CCS
T ss_pred CchHHHHHHHHHHHHhccccc--ccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhc-CCC
Confidence 999999999999998754221 12578999999999999999999999844 58999999999999988888887 899
Q ss_pred EEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhc--CCCCcEEEEeccCCccHHHHHHHHhcCC
Q 008235 309 FLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSI--SGKPHTVVFNDCLTYTSVPAVQNLLLGS 383 (573)
Q Consensus 309 IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l--~~~~q~l~~SAT~~~~~~~~~~~~l~~~ 383 (573)
|+|+|||+|++++.++.+.++++++|||||||+|++ ..++..|+..+ ++++|+++||||+|..+..++..++.++
T Consensus 182 Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~ 261 (434)
T 2db3_A 182 VVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNY 261 (434)
T ss_dssp EEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSC
T ss_pred EEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCC
Confidence 999999999999999888999999999999999998 67888998875 6789999999999999999999999988
Q ss_pred ceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeee
Q 008235 384 INRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTG 463 (573)
Q Consensus 384 ~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~ 463 (573)
. .+.++.. .....++.|.+..+. ...|...|.++|... ..++||||+++..|+.++..|...|+.+..+
T Consensus 262 ~-~i~~~~~-~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~--------~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~l 330 (434)
T 2db3_A 262 V-FVAIGIV-GGACSDVKQTIYEVN-KYAKRSKLIEILSEQ--------ADGTIVFVETKRGADFLASFLSEKEFPTTSI 330 (434)
T ss_dssp E-EEEESST-TCCCTTEEEEEEECC-GGGHHHHHHHHHHHC--------CTTEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred E-EEEeccc-cccccccceEEEEeC-cHHHHHHHHHHHHhC--------CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEE
Confidence 6 6776654 355678999999886 677888887777663 3469999999999999999999999999864
Q ss_pred cCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEecc
Q 008235 464 SNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTK 538 (573)
Q Consensus 464 ~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~ 538 (573)
||+ |.++++.| ++|+..+|++ ||++ +||||+|+|++|||||+|.++++|+||+|||||+|+.|.|++|+++
T Consensus 331 -hg~~~~~~R~~~l~~F-~~g~~~vLva-T~v~-~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~ 406 (434)
T 2db3_A 331 -HGDRLQSQREQALRDF-KNGSMKVLIA-TSVA-SRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDP 406 (434)
T ss_dssp -STTSCHHHHHHHHHHH-HTSSCSEEEE-CGGG-TSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECT
T ss_pred -eCCCCHHHHHHHHHHH-HcCCCcEEEE-chhh-hCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEec
Confidence 775 45589999 9999999887 6888 5999999999999999999999999999999999999999999995
Q ss_pred -ccHHHHHHHHHHHHHcCCCCCHHHHHh
Q 008235 539 -DDAAHAGQMIEILEQCGQVVPDALRDL 565 (573)
Q Consensus 539 -~d~~~~~~l~~~l~~~~~~vp~~l~~~ 565 (573)
++...+..|.++|+.++++||+||.+|
T Consensus 407 ~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 407 EKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp TTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred cccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 578899999999999999999998764
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-57 Score=483.43 Aligned_cols=388 Identities=17% Similarity=0.209 Sum_probs=326.1
Q ss_pred ceEEccCCCCCCCCCCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhH
Q 008235 152 EVHLNGKSCANGHHGQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIV 231 (573)
Q Consensus 152 ~i~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGK 231 (573)
.|.+.|.++|.+ ..+|+++++++.+ . +++...||..| ||+|.++||.++.|+|++++|||| |||
T Consensus 2 ~~~~~~~~~p~~--~~~f~~~~l~~~l----~----~~l~~~~~~~~-----~~~Q~~~i~~i~~~~~~lv~a~TG-sGK 65 (417)
T 2i4i_A 2 MVEATGNNCPPH--IESFSDVEMGEII----M----GNIELTRYTRP-----TPVQKHAIPIIKEKRDLMACAQTG-SGK 65 (417)
T ss_dssp CEEEESTTCCCC--CSSGGGSCCCHHH----H----HHHHHHTCCSC-----CHHHHHHHHHHHTTCCEEEECCTT-SCH
T ss_pred CcccCCCcCCcc--cCCHhhCCCCHHH----H----HHHHHCCCCCC-----CHHHHHHHHHHccCCCEEEEcCCC-CHH
Confidence 356677777755 5568888877666 3 44455799999 999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhchhc-----------cCCCCCCcEEEEEcccHHHHHHHHHHHhhhh-cCCcEEEEeCCCCCHHHHH
Q 008235 232 QIAWIVATAADSIARKEK-----------EGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQI 299 (573)
Q Consensus 232 Tlaf~lp~l~~l~~~~~~-----------~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~-~~~i~~~~~~gg~~~~~~~ 299 (573)
|++|++|+++.+...... ......++++|||+|||+||.|+++.++.+. ..+++++.++||.....+.
T Consensus 66 T~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 145 (417)
T 2i4i_A 66 TAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 145 (417)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHH
T ss_pred HHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHH
Confidence 999999999988754311 0011235789999999999999999999984 4589999999999999888
Q ss_pred HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhc--CC--CCcEEEEeccCCccH
Q 008235 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSI--SG--KPHTVVFNDCLTYTS 372 (573)
Q Consensus 300 ~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l--~~--~~q~l~~SAT~~~~~ 372 (573)
..+.. +++|+|+||++|.+++..+.+.+.++++|||||||++++ ...+..++... +. .+|+++||||++..+
T Consensus 146 ~~~~~-~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~ 224 (417)
T 2i4i_A 146 RDLER-GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI 224 (417)
T ss_dssp HHHTT-CCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHH
T ss_pred HHhhC-CCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHH
Confidence 88877 799999999999999999888899999999999999987 66777777743 32 689999999999999
Q ss_pred HHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHH
Q 008235 373 VPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVST 452 (573)
Q Consensus 373 ~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~ 452 (573)
..++..++.++. .+.+... .....++.+.+..+. ...+...+.+++... . ...++||||+++..++.++..
T Consensus 225 ~~~~~~~~~~~~-~~~~~~~-~~~~~~i~~~~~~~~-~~~~~~~l~~~l~~~---~---~~~~~lVf~~~~~~~~~l~~~ 295 (417)
T 2i4i_A 225 QMLARDFLDEYI-FLAVGRV-GSTSENITQKVVWVE-ESDKRSFLLDLLNAT---G---KDSLTLVFVETKKGADSLEDF 295 (417)
T ss_dssp HHHHHHHCSSCE-EEEEC-----CCSSEEEEEEECC-GGGHHHHHHHHHHTC---C---TTCEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCE-EEEeCCC-CCCccCceEEEEEec-cHhHHHHHHHHHHhc---C---CCCeEEEEECCHHHHHHHHHH
Confidence 999999999885 5555543 345677889888886 677887777777653 1 257999999999999999999
Q ss_pred HHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCC
Q 008235 453 LKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHT 527 (573)
Q Consensus 453 L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g 527 (573)
|...|+.+.. +||+ +.++++.| ++|...++++ ||+.+ +|+|+|++++||+||+|.+..+|+||+||+||.|
T Consensus 296 L~~~~~~~~~-~h~~~~~~~r~~~~~~f-~~g~~~vlva-T~~~~-~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 371 (417)
T 2i4i_A 296 LYHEGYACTS-IHGDRSQRDREEALHQF-RSGKSPILVA-TAVAA-RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 371 (417)
T ss_dssp HHHTTCCEEE-ECTTSCHHHHHHHHHHH-HHTSSCEEEE-CHHHH-TTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--
T ss_pred HHHCCCCeeE-ecCCCCHHHHHHHHHHH-HcCCCCEEEE-CChhh-cCCCcccCCEEEEEcCCCCHHHHHHhcCccccCC
Confidence 9999999986 4764 45689999 8999998877 67774 8999999999999999999999999999999999
Q ss_pred CcceEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHHhhhcC
Q 008235 528 VSGILHSFFTKDDAAHAGQMIEILEQCGQVVPDALRDLCHTS 569 (573)
Q Consensus 528 ~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~~~ 569 (573)
+.|.|++|+++.|...+..+.+.+..+++++|++|..++...
T Consensus 372 ~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 413 (417)
T 2i4i_A 372 NLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEH 413 (417)
T ss_dssp CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHHHTCS
T ss_pred CCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHHHHHHHhh
Confidence 999999999999999999999999999999999999998653
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=8.6e-55 Score=461.96 Aligned_cols=361 Identities=14% Similarity=0.171 Sum_probs=314.2
Q ss_pred CCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhc
Q 008235 167 QACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIAR 246 (573)
Q Consensus 167 ~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~ 246 (573)
.+|+++++++.+ . +++...||..| +|+|.++|+.++.|+|++++|||| ||||++|++|+++.+...
T Consensus 37 ~~f~~~~l~~~l----~----~~l~~~g~~~~-----~~~Q~~ai~~i~~~~~~lv~a~TG-sGKT~~~~~~~~~~l~~~ 102 (410)
T 2j0s_A 37 PTFDTMGLREDL----L----RGIYAYGFEKP-----SAIQQRAIKQIIKGRDVIAQSQSG-TGKTATFSISVLQCLDIQ 102 (410)
T ss_dssp CSGGGGCCCHHH----H----HHHHHHTCCSC-----CHHHHHHHHHHHTTCCEEEECCTT-SSHHHHHHHHHHHTCCTT
T ss_pred CCHhhcCCCHHH----H----HHHHHcCCCCC-----CHHHHHHHHHHhCCCCEEEECCCC-CCchHHHHHHHHHHHhhc
Confidence 347777777666 4 44455799999 999999999999999999999999 999999999999876432
Q ss_pred hhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC
Q 008235 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA 325 (573)
Q Consensus 247 ~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~ 325 (573)
. .++++|||+||++|+.|+++.+..+. ..++.+..++||.....+...+.. +++|+|+||++|++++..+.
T Consensus 103 ~-------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~ivv~Tp~~l~~~l~~~~ 174 (410)
T 2j0s_A 103 V-------RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPGRVFDMIRRRS 174 (410)
T ss_dssp S-------CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH-CCSEEEECHHHHHHHHHTTS
T ss_pred c-------CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc-CCCEEEcCHHHHHHHHHhCC
Confidence 1 46799999999999999999999984 458999999999999988888877 79999999999999999988
Q ss_pred CCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEE
Q 008235 326 IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQ 402 (573)
Q Consensus 326 ~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~ 402 (573)
+.+.++++|||||||++++ ...+..++..+++..|+++||||++..+..++..++.+|. .+.+... ......+.+
T Consensus 175 ~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 252 (410)
T 2j0s_A 175 LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPI-RILVKRD-ELTLEGIKQ 252 (410)
T ss_dssp SCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCE-EECCCGG-GCSCTTEEE
T ss_pred ccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCE-EEEecCc-cccCCCceE
Confidence 8899999999999999988 6778888888999999999999999988888888888886 5555443 345567899
Q ss_pred EEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHh
Q 008235 403 SVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEA 477 (573)
Q Consensus 403 ~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~ 477 (573)
.+..+.....+...+.+++.... ..++||||+++..++.++..|...|+.+..+ ||+ +..+++.| +
T Consensus 253 ~~~~~~~~~~k~~~l~~~~~~~~-------~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~-h~~~~~~~r~~~~~~f-~ 323 (410)
T 2j0s_A 253 FFVAVEREEWKFDTLCDLYDTLT-------ITQAVIFCNTKRKVDWLTEKMREANFTVSSM-HGDMPQKERESIMKEF-R 323 (410)
T ss_dssp EEEEESSTTHHHHHHHHHHHHHT-------SSEEEEECSSHHHHHHHHHHHHHTTCCCEEE-CTTSCHHHHHHHHHHH-H
T ss_pred EEEEeCcHHhHHHHHHHHHHhcC-------CCcEEEEEcCHHHHHHHHHHHHhCCCceEEe-eCCCCHHHHHHHHHHH-H
Confidence 99888766778888888777642 4699999999999999999999999998864 765 45589999 8
Q ss_pred cCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCCC
Q 008235 478 DGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQV 557 (573)
Q Consensus 478 ~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~ 557 (573)
+|...++++ +|+. .+|+|+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++.|...+..+.++++....+
T Consensus 324 ~g~~~vlv~-T~~~-~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (410)
T 2j0s_A 324 SGASRVLIS-TDVW-ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDE 401 (410)
T ss_dssp HTSSCEEEE-CGGG-SSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEE
T ss_pred CCCCCEEEE-CChh-hCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCcee
Confidence 999998877 6777 48999999999999999999999999999999999999999999999999999999999888777
Q ss_pred CCHHH
Q 008235 558 VPDAL 562 (573)
Q Consensus 558 vp~~l 562 (573)
+|..+
T Consensus 402 ~~~~~ 406 (410)
T 2j0s_A 402 MPMNV 406 (410)
T ss_dssp CCSCC
T ss_pred cccch
Confidence 77543
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-53 Score=452.79 Aligned_cols=365 Identities=14% Similarity=0.198 Sum_probs=300.4
Q ss_pred CCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhc
Q 008235 167 QACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIAR 246 (573)
Q Consensus 167 ~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~ 246 (573)
.+|+..++++.+ .+++...||..| +|+|.++|+.++.|+|++++|||| ||||++|++|+++.+...
T Consensus 40 ~~f~~~~l~~~~--------~~~l~~~~~~~~-----~~~Q~~~i~~~~~~~~~lv~a~TG-sGKT~~~~~~~~~~~~~~ 105 (414)
T 3eiq_A 40 DSFDDMNLSESL--------LRGIYAYGFEKP-----SAIQQRAILPCIKGYDVIAQAQSG-TGKTATFAISILQQIELD 105 (414)
T ss_dssp CCGGGGCCCHHH--------HHHHHHTTCCSC-----CHHHHHHHHHHHTTCCEEECCCSC-SSSHHHHHHHHHHHCCTT
T ss_pred cCHhhCCCCHHH--------HHHHHHcCCCCC-----CHHHHHHhHHHhCCCCEEEECCCC-CcccHHHHHHHHHHHhhc
Confidence 346666666665 345566899999 999999999999999999999999 999999999999887543
Q ss_pred hhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC
Q 008235 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA 325 (573)
Q Consensus 247 ~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~ 325 (573)
. .+.++|||+||++|+.|+++.+..+. ..++.+..++||.....+...+...+++|+|+||++|++++..+.
T Consensus 106 ~-------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~ 178 (414)
T 3eiq_A 106 L-------KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY 178 (414)
T ss_dssp S-------CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS
T ss_pred C-------CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC
Confidence 2 46789999999999999999999984 458999999999999888888875589999999999999999988
Q ss_pred CCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEE
Q 008235 326 IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQ 402 (573)
Q Consensus 326 ~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~ 402 (573)
+.+.++++|||||||++.+ ...+..++..++++.|+++||||++..+..++..++.+|. .+.+... ......+.+
T Consensus 179 ~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 256 (414)
T 3eiq_A 179 LSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPI-RILVKKE-ELTLEGIRQ 256 (414)
T ss_dssp SCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCE-EECCCCC-CCCTTSCCE
T ss_pred cccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCE-EEEecCC-ccCCCCceE
Confidence 8899999999999999876 6788889999999999999999999999999999999885 5555443 355667888
Q ss_pred EEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHh
Q 008235 403 SVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEA 477 (573)
Q Consensus 403 ~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~ 477 (573)
.+..+...+.+...+..++... . ..++||||+++..++.++..|...++.+.. +||+ +..+++.| +
T Consensus 257 ~~~~~~~~~~~~~~l~~~~~~~----~---~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~-~h~~~~~~~r~~~~~~f-~ 327 (414)
T 3eiq_A 257 FYINVEREEWKLDTLCDLYETL----T---ITQAVIFINTRRKVDWLTEKMHARDFTVSA-MHGDMDQKERDVIMREF-R 327 (414)
T ss_dssp EEEECSSSTTHHHHHHHHHHSS----C---CSSCEEECSCHHHHHHHHHHHHTTTCCCEE-C---CHHHHHHHHHHHH-S
T ss_pred EEEEeChHHhHHHHHHHHHHhC----C---CCcEEEEeCCHHHHHHHHHHHHhcCCeEEE-ecCCCCHHHHHHHHHHH-H
Confidence 8888876666887666666543 2 579999999999999999999999999886 4764 45589999 9
Q ss_pred cCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCCC
Q 008235 478 DGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQV 557 (573)
Q Consensus 478 ~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~ 557 (573)
+|...+|++ +++. .+|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++.|...+..+.++++....+
T Consensus 328 ~g~~~vlv~-T~~~-~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (414)
T 3eiq_A 328 SGSSRVLIT-TDLL-ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEE 405 (414)
T ss_dssp CC---CEEE-CSSC-C--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEE
T ss_pred cCCCcEEEE-CCcc-ccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccc
Confidence 999999877 6677 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHh
Q 008235 558 VPDALRDL 565 (573)
Q Consensus 558 vp~~l~~~ 565 (573)
+|.++.++
T Consensus 406 ~~~~~~~l 413 (414)
T 3eiq_A 406 MPLNVADL 413 (414)
T ss_dssp CCC-----
T ss_pred cChhhhhc
Confidence 99988765
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.8e-52 Score=441.01 Aligned_cols=361 Identities=18% Similarity=0.209 Sum_probs=309.7
Q ss_pred CCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhc
Q 008235 167 QACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIAR 246 (573)
Q Consensus 167 ~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~ 246 (573)
.+|+++++++.+ .+++...||.+| +|+|.++++.+++|+|++++|||| ||||++|++|++..+...
T Consensus 21 ~~f~~~~l~~~l--------~~~l~~~g~~~~-----~~~Q~~~i~~i~~~~~~li~a~TG-sGKT~~~~~~~~~~~~~~ 86 (400)
T 1s2m_A 21 NTFEDFYLKREL--------LMGIFEAGFEKP-----SPIQEEAIPVAITGRDILARAKNG-TGKTAAFVIPTLEKVKPK 86 (400)
T ss_dssp CCGGGGCCCHHH--------HHHHHHTTCCSC-----CHHHHHHHHHHHHTCCEEEECCTT-SCHHHHHHHHHHHHCCTT
T ss_pred CChhhcCCCHHH--------HHHHHHCCCCCC-----CHHHHHHHHHHhcCCCEEEECCCC-cHHHHHHHHHHHHHHhhc
Confidence 347777776665 445566899999 999999999999999999999999 999999999999877543
Q ss_pred hhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC
Q 008235 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA 325 (573)
Q Consensus 247 ~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~ 325 (573)
. .++++|||+||++|+.|+++.+..+. ..++.+..++||.....+...+.. +++|+|+||++|.+++....
T Consensus 87 ~-------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Ivv~T~~~l~~~~~~~~ 158 (400)
T 1s2m_A 87 L-------NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE-TVHILVGTPGRVLDLASRKV 158 (400)
T ss_dssp S-------CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTS-CCSEEEECHHHHHHHHHTTC
T ss_pred c-------CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcC-CCCEEEEchHHHHHHHHhCC
Confidence 1 46789999999999999999999984 458999999999998887777766 79999999999999999888
Q ss_pred CCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEE
Q 008235 326 IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQ 402 (573)
Q Consensus 326 ~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~ 402 (573)
..+.++++|||||||++++ ...+..++..+++..|++++|||++..+..++..++..|. .+.+... ....++.+
T Consensus 159 ~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~ 235 (400)
T 1s2m_A 159 ADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPY-EINLMEE--LTLKGITQ 235 (400)
T ss_dssp SCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCE-EESCCSS--CBCTTEEE
T ss_pred cccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCe-EEEeccc--cccCCcee
Confidence 8899999999999999998 6678888888888999999999999999999999998885 4444432 44567888
Q ss_pred EEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHh
Q 008235 403 SVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEA 477 (573)
Q Consensus 403 ~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~ 477 (573)
.+..+. ...|...+..++... . ..++||||+++..++.++..|...|+.+.. +||+ +..+++.| +
T Consensus 236 ~~~~~~-~~~k~~~l~~~~~~~----~---~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~r~~~~~~f-~ 305 (400)
T 1s2m_A 236 YYAFVE-ERQKLHCLNTLFSKL----Q---INQAIIFCNSTNRVELLAKKITDLGYSCYY-SHARMKQQERNKVFHEF-R 305 (400)
T ss_dssp EEEECC-GGGHHHHHHHHHHHS----C---CSEEEEECSSHHHHHHHHHHHHHHTCCEEE-ECTTSCHHHHHHHHHHH-H
T ss_pred EEEEec-hhhHHHHHHHHHhhc----C---CCcEEEEEecHHHHHHHHHHHHhcCCCeEE-ecCCCCHHHHHHHHHHH-h
Confidence 888886 567877776666552 2 579999999999999999999999999886 4664 45689999 8
Q ss_pred cCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCCC
Q 008235 478 DGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQV 557 (573)
Q Consensus 478 ~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~ 557 (573)
+|...++++ +++. .+|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++.|...+..|.+.+....++
T Consensus 306 ~g~~~vLv~-T~~~-~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~ 383 (400)
T 1s2m_A 306 QGKVRTLVC-SDLL-TRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAA 383 (400)
T ss_dssp TTSSSEEEE-SSCS-SSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEE
T ss_pred cCCCcEEEE-cCcc-ccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccc
Confidence 999888877 5677 37999999999999999999999999999999999999999999999999999999988888888
Q ss_pred CCHHHHH
Q 008235 558 VPDALRD 564 (573)
Q Consensus 558 vp~~l~~ 564 (573)
+|.++.+
T Consensus 384 ~~~~~~~ 390 (400)
T 1s2m_A 384 IPATIDK 390 (400)
T ss_dssp CCSSCCG
T ss_pred ccccccc
Confidence 8876544
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.2e-52 Score=438.81 Aligned_cols=360 Identities=15% Similarity=0.165 Sum_probs=308.8
Q ss_pred CccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhch
Q 008235 168 ACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARK 247 (573)
Q Consensus 168 ~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~ 247 (573)
+|+++++++.+ . +++...||..| +|+|.++|+.++.|+|++++|||| +|||++|++|++..+....
T Consensus 9 ~f~~~~l~~~l----~----~~l~~~g~~~~-----~~~Q~~~i~~~~~~~~~lv~a~TG-sGKT~~~~~~~~~~l~~~~ 74 (391)
T 1xti_A 9 GFRDFLLKPEL----L----RAIVDCGFEHP-----SEVQHECIPQAILGMDVLCQAKSG-MGKTAVFVLATLQQLEPVT 74 (391)
T ss_dssp CGGGGCCCHHH----H----HHHHHHSCCSC-----CHHHHHHHHHHTTTCCEEEECSSC-SSHHHHHHHHHHHHCCCCT
T ss_pred ChhhcCCCHHH----H----HHHHHCCCCCC-----CHHHHHHHHHHhcCCcEEEECCCC-CcHHHHHHHHHHHhhcccC
Confidence 47777777666 3 44455799999 999999999999999999999999 9999999999998775331
Q ss_pred hccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-C-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC
Q 008235 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-F-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA 325 (573)
Q Consensus 248 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~ 325 (573)
.++++||++||++|+.|+++.+..+.. . ++++..++||.....+...+..+.++|+|+||++|..++....
T Consensus 75 -------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~ 147 (391)
T 1xti_A 75 -------GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS 147 (391)
T ss_dssp -------TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS
T ss_pred -------CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC
Confidence 467899999999999999999999844 3 8999999999998888777776568999999999999999888
Q ss_pred CCCCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceE
Q 008235 326 IDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACII 401 (573)
Q Consensus 326 ~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~ 401 (573)
..+.++++|||||||++.+ ...+..++..++...|++++|||++..+..++..++..|. .+.+..........+.
T Consensus 148 ~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 226 (391)
T 1xti_A 148 LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM-EIFVDDETKLTLHGLQ 226 (391)
T ss_dssp SCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCE-EEECCCCCCCCCTTCE
T ss_pred ccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCe-EEEecCccccCcccce
Confidence 8899999999999999987 5677788888888999999999999999999999999986 5665544344556788
Q ss_pred EEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHH
Q 008235 402 QSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVE 476 (573)
Q Consensus 402 ~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~ 476 (573)
+.+..+. ...+...+.+++... . ..++||||+++..++.++..|...|+.+..+ ||+ +..+++.|
T Consensus 227 ~~~~~~~-~~~~~~~l~~~l~~~----~---~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~r~~~~~~f- 296 (391)
T 1xti_A 227 QYYVKLK-DNEKNRKLFDLLDVL----E---FNQVVIFVKSVQRCIALAQLLVEQNFPAIAI-HRGMPQEERLSRYQQF- 296 (391)
T ss_dssp EEEEECC-GGGHHHHHHHHHHHS----C---CSEEEEECSCHHHHHHHHHHHHHTTCCEEEE-CTTSCHHHHHHHHHHH-
T ss_pred EEEEEcC-chhHHHHHHHHHHhc----C---CCcEEEEeCcHHHHHHHHHHHHhCCCcEEEE-eCCCCHHHHHHHHHHH-
Confidence 8888886 677887777777653 2 5799999999999999999999999998864 664 55689999
Q ss_pred hcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccc-cHHHHHHHHHHHHHcC
Q 008235 477 ADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKD-DAAHAGQMIEILEQCG 555 (573)
Q Consensus 477 ~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~-d~~~~~~l~~~l~~~~ 555 (573)
++|...++++ +++.+ +|+|+|++++||+|++|.+...|+||+||+||.|+.|.|++|+++. +...+..+.+.+....
T Consensus 297 ~~~~~~vlv~-T~~~~-~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (391)
T 1xti_A 297 KDFQRRILVA-TNLFG-RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNI 374 (391)
T ss_dssp HTTCCSEEEE-SCCCS-SCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCC
T ss_pred hcCCCcEEEE-CChhh-cCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCCh
Confidence 8999988877 56774 8999999999999999999999999999999999999999999876 5677888888887777
Q ss_pred CCCCHH
Q 008235 556 QVVPDA 561 (573)
Q Consensus 556 ~~vp~~ 561 (573)
.++|.+
T Consensus 375 ~~~~~~ 380 (391)
T 1xti_A 375 SELPDE 380 (391)
T ss_dssp EECCSC
T ss_pred hhCCcc
Confidence 788865
No 7
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.9e-52 Score=463.69 Aligned_cols=354 Identities=16% Similarity=0.144 Sum_probs=293.2
Q ss_pred hHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHh--cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEE
Q 008235 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYS--SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFL 259 (573)
Q Consensus 182 ~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il--~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~ 259 (573)
+.+.|.+++...||..| ||+|.++|+.++ .|+|++++|||| ||||++|++|+++.+....... ..++++
T Consensus 28 l~~~l~~~l~~~g~~~~-----~~~Q~~~i~~il~~~~~dvlv~apTG-sGKTl~~~lpil~~l~~~~~~~---~~~~~~ 98 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGL-----TPVQQKTIKPILSSEDHDVIARAKTG-TGKTFAFLIPIFQHLINTKFDS---QYMVKA 98 (579)
T ss_dssp SCHHHHHHHHTTTCSSC-----CHHHHHHHHHHHCSSSEEEEEECCTT-SCHHHHHHHHHHHHHHHTTTSS---TTSCCE
T ss_pred CCHHHHHHHHHCCCCCC-----CHHHHHHHHHHHccCCCeEEEEcCCC-cHHHHHHHHHHHHHHHhccccc---cCCCeE
Confidence 35667778888999999 999999999999 789999999999 9999999999999988764321 247899
Q ss_pred EEEcccHHHHHHHHHHHhhhhc-----CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC-CCCCCCccE
Q 008235 260 LFLVSSQEKAAKVRSVCKPLKA-----FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK-AIDVSGVSL 333 (573)
Q Consensus 260 Lil~PtreLa~Qi~~~~~~l~~-----~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~-~~~l~~l~~ 333 (573)
|||+||++||.|+++.+..+.. ..+.+..++||.....+...+...+++|+|+||++|++++... ...++.+++
T Consensus 99 lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~ 178 (579)
T 3sqw_A 99 VIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDY 178 (579)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCE
T ss_pred EEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCE
Confidence 9999999999999999998732 2577889999999998888886657999999999999998774 456889999
Q ss_pred EEEeCcccccC---cchHHHHHHhcC-------CCCcEEEEeccCCccHHHHHHHHhcCCceEEEcC---CCccccccce
Q 008235 334 LVVDRLDSLSK---GDTLSLIRQSIS-------GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLN---QSVASQSACI 400 (573)
Q Consensus 334 lViDEad~ll~---~~~l~~Il~~l~-------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~---~~~~~~~~~i 400 (573)
|||||||+|++ ...+..|+..++ .++|+++||||+++.+..++..++..|. .+.+. .........+
T Consensus 179 lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~i 257 (579)
T 3sqw_A 179 KVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKE-CLFLDTVDKNEPEAHERI 257 (579)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSE-EEEEESSCSSSCSSCTTE
T ss_pred EEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCc-eEEEeecCcccccccccc
Confidence 99999999998 566777776653 3789999999999999999999998874 33332 2223455678
Q ss_pred EEEEEEcCChhHHHHHHHHHHHHHhcc-CCCCCCCcEEEEecChhhHHHHHHHHHHC---CCCeeeecCCC-----HHHH
Q 008235 401 IQSVNVCASDEEKILKGIQVLDHAYGD-HFHSEPLKVLYIVGKDSKFQNLVSTLKCK---GYSISTGSNCI-----VSHI 471 (573)
Q Consensus 401 ~~~~~~~~~~~~k~~~l~~~L~~~~~~-~~~~~~~k~lIF~~s~~~~~~l~~~L~~~---g~~~~~~~~~~-----~~~~ 471 (573)
.+.+..+.....+...+...+...+.. .. ..++||||+|+..|+.++..|... ++.+.. +||+ +..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~-~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 258 DQSVVISEKFANSIFAAVEHIKKQIKERDS---NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILE-FHGKITQNKRTSL 333 (579)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHHHHHHTTT---CCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEE-ESTTSCHHHHHHH
T ss_pred ceEEEEecchhhhHHHHHHHHHHHHhhcCC---CCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEE-ecCCCCHHHHHHH
Confidence 888888765555554444444444332 33 579999999999999999999887 888876 4775 4558
Q ss_pred HHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHH
Q 008235 472 KNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEIL 551 (573)
Q Consensus 472 l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l 551 (573)
++.| ++|...+|++ ||++ .+|||+|+|++||+||+|.+++.|+||+|||||+|+.|.|++|+++.|..+++.|.+..
T Consensus 334 ~~~F-~~g~~~vLVa-T~~~-~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 334 VKRF-KKDESGILVC-TDVG-ARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHH-HHCSSEEEEE-CGGG-TSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHh-hcCCCeEEEE-cchh-hcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 9999 8999999887 6788 48999999999999999999999999999999999999999999999999999888765
Q ss_pred H
Q 008235 552 E 552 (573)
Q Consensus 552 ~ 552 (573)
.
T Consensus 411 ~ 411 (579)
T 3sqw_A 411 N 411 (579)
T ss_dssp C
T ss_pred C
Confidence 3
No 8
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.2e-52 Score=460.71 Aligned_cols=354 Identities=16% Similarity=0.144 Sum_probs=291.7
Q ss_pred hHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHh--cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEE
Q 008235 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYS--SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFL 259 (573)
Q Consensus 182 ~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il--~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~ 259 (573)
+.+.+.+++...||..| ||+|.++|+.++ .|+|++++|||| ||||++|++|+++.+....... ..++++
T Consensus 79 l~~~l~~~l~~~g~~~~-----~~~Q~~~i~~~l~~~~~~~lv~apTG-sGKTl~~~lpil~~l~~~~~~~---~~~~~~ 149 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGL-----TPVQQKTIKPILSSEDHDVIARAKTG-TGKTFAFLIPIFQHLINTKFDS---QYMVKA 149 (563)
T ss_dssp SCHHHHHHHHTTCCSSC-----CHHHHHHHHHHHSSSSEEEEEECCTT-SCHHHHHHHHHHHHHHHTTTSS---TTSCCE
T ss_pred CCHHHHHHHHHCCCCCC-----CHHHHHHHHHHhcCCCCeEEEECCCC-CCccHHHHHHHHHHHHhccccc---cCCeeE
Confidence 34566777788999999 999999999999 679999999999 9999999999999998764322 146799
Q ss_pred EEEcccHHHHHHHHHHHhhhhc-----CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC-CCCCCCccE
Q 008235 260 LFLVSSQEKAAKVRSVCKPLKA-----FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK-AIDVSGVSL 333 (573)
Q Consensus 260 Lil~PtreLa~Qi~~~~~~l~~-----~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~-~~~l~~l~~ 333 (573)
|||+||++||.|+++.++.+.. ..+.+..++||.....+...+...+++|+|+||++|++++.+. ...++++++
T Consensus 150 lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~ 229 (563)
T 3i5x_A 150 VIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDY 229 (563)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCE
T ss_pred EEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceE
Confidence 9999999999999999998622 2577889999999988888776558999999999999998764 346788999
Q ss_pred EEEeCcccccC---cchHHHHHHhc-------CCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcC---CCccccccce
Q 008235 334 LVVDRLDSLSK---GDTLSLIRQSI-------SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLN---QSVASQSACI 400 (573)
Q Consensus 334 lViDEad~ll~---~~~l~~Il~~l-------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~---~~~~~~~~~i 400 (573)
|||||||+|++ ...+..|+..+ ..++|+++||||++..+..++..++..+. .+.+. .........+
T Consensus 230 lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 308 (563)
T 3i5x_A 230 KVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKE-CLFLDTVDKNEPEAHERI 308 (563)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSE-EEEEESSCSSSCSSCTTE
T ss_pred EEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCc-eEEEeccCCCCccccccC
Confidence 99999999998 56677776665 24789999999999999999999998874 33332 1223455678
Q ss_pred EEEEEEcCChhHHHHHHHHHHHHHhcc-CCCCCCCcEEEEecChhhHHHHHHHHHHC---CCCeeeecCCC-----HHHH
Q 008235 401 IQSVNVCASDEEKILKGIQVLDHAYGD-HFHSEPLKVLYIVGKDSKFQNLVSTLKCK---GYSISTGSNCI-----VSHI 471 (573)
Q Consensus 401 ~~~~~~~~~~~~k~~~l~~~L~~~~~~-~~~~~~~k~lIF~~s~~~~~~l~~~L~~~---g~~~~~~~~~~-----~~~~ 471 (573)
.+.+..+.....+...+...+...+.. .. ..++||||+|+..|+.++..|... ++.+.. +||+ +..+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~-~h~~~~~~~R~~~ 384 (563)
T 3i5x_A 309 DQSVVISEKFANSIFAAVEHIKKQIKERDS---NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILE-FHGKITQNKRTSL 384 (563)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHHHHHHTTT---CCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEE-ESTTSCHHHHHHH
T ss_pred ceEEEECchhHhhHHHHHHHHHHHHhhcCC---CCcEEEEcCcHHHHHHHHHHHHHhccCCceEEE-ecCCCCHHHHHHH
Confidence 888888765555555444444443332 33 679999999999999999999886 888876 4775 4558
Q ss_pred HHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHH
Q 008235 472 KNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEIL 551 (573)
Q Consensus 472 l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l 551 (573)
++.| ++|+..+|++ ||+. ++|||+|+|++||+||+|.++.+|+||+|||||+|+.|.|++|+++.|..+++.|.+..
T Consensus 385 ~~~f-~~g~~~vLva-T~~~-~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 385 VKRF-KKDESGILVC-TDVG-ARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp HHHH-HHCSSEEEEE-CGGG-TSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHH-hcCCCCEEEE-cchh-hcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 9999 8999999887 6788 48999999999999999999999999999999999999999999999999999888765
Q ss_pred H
Q 008235 552 E 552 (573)
Q Consensus 552 ~ 552 (573)
.
T Consensus 462 ~ 462 (563)
T 3i5x_A 462 N 462 (563)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.4e-54 Score=465.61 Aligned_cols=370 Identities=14% Similarity=0.164 Sum_probs=171.3
Q ss_pred eEEccCCCCCC-CCCCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcC--CcEEEEeCCCch
Q 008235 153 VHLNGKSCANG-HHGQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA--KDILETSGSSST 229 (573)
Q Consensus 153 i~~~g~~~~~~-~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g--~dvl~~A~TG~S 229 (573)
+.+.+.+.+.+ ....+|+..++++.+ .+++...||..| ||+|.++||.++.| +|++++|||| |
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l--------~~~l~~~g~~~p-----~~~Q~~ai~~il~~~~~~~l~~a~TG-s 142 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQL--------LQGVYAMGFNRP-----SKIQENALPLMLAEPPQNLIAQSQSG-T 142 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHH--------HHHHHHTTCCSC-----CHHHHHHHHHHTSBSCCEEEEECCSS-S
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHH--------HHHHHHcCCCCC-----CHHHHHHHHHHHcCCCCcEEEEcCCC-C
Confidence 33444443332 224456666666655 455566899999 99999999999997 9999999999 9
Q ss_pred hHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcC--CcEEEEeCCCCCHHHHHHHhhcCCC
Q 008235 230 IVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEP 307 (573)
Q Consensus 230 GKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~--~i~~~~~~gg~~~~~~~~~l~~~~~ 307 (573)
|||++|++|++..+.... .++++|||+||++||.|+++.+..+... ++.+...+|+....... . .++
T Consensus 143 GKT~~~~l~il~~l~~~~-------~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~ 211 (479)
T 3fmp_B 143 GKTAAFVLAMLSQVEPAN-------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---K-ISE 211 (479)
T ss_dssp SHHHHHHHHHHTTCCTTS-------CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---C-CCC
T ss_pred chhHHHHHHHHHHHhhcC-------CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---c-CCC
Confidence 999999999998775432 4679999999999999999999998543 67888888876644321 2 267
Q ss_pred cEEEeCHHHHHHHHHc-CCCCCCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcC
Q 008235 308 EFLVSTPERLLKLVSL-KAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLG 382 (573)
Q Consensus 308 ~IlV~TP~rL~~~l~~-~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~ 382 (573)
+|+|+||++|++++.+ +.+.+.++++|||||||+|++ ...+..++..++.++|+++||||++..+..++..++.+
T Consensus 212 ~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~ 291 (479)
T 3fmp_B 212 QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPD 291 (479)
T ss_dssp SEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSS
T ss_pred CEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCC
Confidence 9999999999999966 567789999999999999986 56677788888899999999999999999999999998
Q ss_pred CceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeee
Q 008235 383 SINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIST 462 (573)
Q Consensus 383 ~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~ 462 (573)
|. .+.+... ......+.|.+..+.....+...|..++... . ..++||||+++..|+.++..|...++.+..
T Consensus 292 ~~-~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~---~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~ 362 (479)
T 3fmp_B 292 PN-VIKLKRE-EETLDTIKQYYVLCSSRDEKFQALCNLYGAI----T---IAQAMIFCHTRKTASWLAAELSKEGHQVAL 362 (479)
T ss_dssp EE-EEEEC------------------------------------------------------------------------
T ss_pred Ce-EEecccc-ccCcCCceEEEEEeCCHHHHHHHHHHHHhhc----c---CCceEEEeCcHHHHHHHHHHHHhCCccEEE
Confidence 85 6666654 3556678888888876677777766666543 2 579999999999999999999999998876
Q ss_pred ecCCCH-----HHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCC------CCHHHHHHHHhccccCCCcce
Q 008235 463 GSNCIV-----SHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFI------ISMKNYVEILTSMARHTVSGI 531 (573)
Q Consensus 463 ~~~~~~-----~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P------~s~~~YiqR~GR~gR~g~~G~ 531 (573)
+||++ ..+++.| ++|...+|++ |++. ++|||+|+|++||+||+| .+..+|+||+|||||+|+.|.
T Consensus 363 -lh~~~~~~~R~~~~~~f-~~g~~~iLv~-T~~~-~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~ 438 (479)
T 3fmp_B 363 -LSGEMMVEQRAAVIERF-REGKEKVLVT-TNVC-ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGL 438 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -ecCCCCHHHHHHHHHHH-HcCCCcEEEE-cccc-ccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCce
Confidence 57754 4589999 9999999877 6788 489999999999999999 567899999999999999999
Q ss_pred EEEEecccc-HHHHHHHHHHHHHcCCCCCH
Q 008235 532 LHSFFTKDD-AAHAGQMIEILEQCGQVVPD 560 (573)
Q Consensus 532 ~i~~~~~~d-~~~~~~l~~~l~~~~~~vp~ 560 (573)
|++|+++.+ ...+..|.+.+......++.
T Consensus 439 ~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 468 (479)
T 3fmp_B 439 AVNMVDSKHSMNILNRIQEHFNKKIERLDT 468 (479)
T ss_dssp ------------------------------
T ss_pred EEEEEcCcchHHHHHHHHHHhCCCceECCC
Confidence 999998764 78888888888776666654
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.4e-51 Score=433.75 Aligned_cols=357 Identities=14% Similarity=0.168 Sum_probs=299.9
Q ss_pred CCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcC--CcEEEEeCCCchhHHHHHHHHHHHHH
Q 008235 166 GQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADS 243 (573)
Q Consensus 166 ~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g--~dvl~~A~TG~SGKTlaf~lp~l~~l 243 (573)
..+|++.++++.+ .+++...||..| +|+|.++|+.++.| +|++++|||| ||||++|++|++..+
T Consensus 24 ~~~f~~~~l~~~l--------~~~l~~~g~~~~-----~~~Q~~~i~~~~~~~~~~~lv~apTG-sGKT~~~~~~~~~~~ 89 (412)
T 3fht_A 24 VKSFEELRLKPQL--------LQGVYAMGFNRP-----SKIQENALPLMLAEPPQNLIAQSQSG-TGKTAAFVLAMLSQV 89 (412)
T ss_dssp SSCTGGGTCCHHH--------HHHHHHTTCCSC-----CHHHHHHHHHHHSSSCCCEEEECCTT-SCHHHHHHHHHHHHC
T ss_pred cCCHhhCCCCHHH--------HHHHHHcCCCCC-----CHHHHHHHHHHhcCCCCeEEEECCCC-chHHHHHHHHHHHHh
Confidence 3457777776665 445566899999 99999999999998 9999999999 999999999999887
Q ss_pred HhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcC--CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHH
Q 008235 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321 (573)
Q Consensus 244 ~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~--~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l 321 (573)
.... .++++|||+||++|+.|+++.+..+... ++.+....|+....... . .+++|+|+||++|++++
T Consensus 90 ~~~~-------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~ivv~T~~~l~~~~ 158 (412)
T 3fht_A 90 EPAN-------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---K-ISEQIVIGTPGTVLDWC 158 (412)
T ss_dssp CTTS-------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---C-CCCSEEEECHHHHHHHH
T ss_pred hhcC-------CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---c-CCCCEEEECchHHHHHH
Confidence 5432 4678999999999999999999998442 78888888887654321 2 26899999999999999
Q ss_pred Hc-CCCCCCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCcccc
Q 008235 322 SL-KAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQ 396 (573)
Q Consensus 322 ~~-~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~ 396 (573)
.. +.+.+.++++|||||||++++ ...+..++..++.+.|++++|||++..+..++..++.++. .+.+... ...
T Consensus 159 ~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~-~~~ 236 (412)
T 3fht_A 159 SKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN-VIKLKRE-EET 236 (412)
T ss_dssp TTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCE-EECCCGG-GSS
T ss_pred HhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCe-EEeeccc-ccc
Confidence 66 667789999999999999876 5577778888889999999999999999999999999885 5666543 355
Q ss_pred ccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHH
Q 008235 397 SACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHI 471 (573)
Q Consensus 397 ~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~ 471 (573)
...+.+.+..+.....+...+..++.... ..++||||+++..|+.++..|...++.+.. +||+ +..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~r~~~ 308 (412)
T 3fht_A 237 LDTIKQYYVLCSSRDEKFQALCNLYGAIT-------IAQAMIFCHTRKTASWLAAELSKEGHQVAL-LSGEMMVEQRAAV 308 (412)
T ss_dssp CTTEEEEEEECSSHHHHHHHHHHHHHHHS-------SSEEEEECSSHHHHHHHHHHHHHTTCCCEE-ECTTSCHHHHHHH
T ss_pred ccCceEEEEEcCChHHHHHHHHHHHhhcC-------CCCEEEEeCCHHHHHHHHHHHHhCCCeEEE-ecCCCCHHHHHHH
Confidence 67788999988877888888877776641 579999999999999999999999999886 4664 4558
Q ss_pred HHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCC------CCHHHHHHHHhccccCCCcceEEEEeccc-cHHHH
Q 008235 472 KNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFI------ISMKNYVEILTSMARHTVSGILHSFFTKD-DAAHA 544 (573)
Q Consensus 472 l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P------~s~~~YiqR~GR~gR~g~~G~~i~~~~~~-d~~~~ 544 (573)
++.| ++|...++++ |++. .+|+|+|++++||+||+| .+..+|+||+||+||.|..|.|++|+++. +...+
T Consensus 309 ~~~f-~~g~~~vlv~-T~~~-~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 385 (412)
T 3fht_A 309 IERF-REGKEKVLVT-TNVC-ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNIL 385 (412)
T ss_dssp HHHH-HTTSCSEEEE-CGGG-TSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHH
T ss_pred HHHH-HCCCCcEEEE-cCcc-ccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHH
Confidence 9999 9999998877 6777 489999999999999999 57899999999999999999999999876 48889
Q ss_pred HHHHHHHHHcCCCCCH
Q 008235 545 GQMIEILEQCGQVVPD 560 (573)
Q Consensus 545 ~~l~~~l~~~~~~vp~ 560 (573)
..+.+.+.....+++.
T Consensus 386 ~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 386 NRIQEHFNKKIERLDT 401 (412)
T ss_dssp HHHHHHHTCCCEEC--
T ss_pred HHHHHHHCCccccCCC
Confidence 9999988877766664
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.9e-52 Score=438.39 Aligned_cols=363 Identities=15% Similarity=0.214 Sum_probs=173.8
Q ss_pred CCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhc
Q 008235 167 QACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIAR 246 (573)
Q Consensus 167 ~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~ 246 (573)
..|+++++++.+ .+ ++...||..| +|+|.++++.++.|+|++++|||| +|||++|++|++..+...
T Consensus 21 ~~f~~~~l~~~l----~~----~l~~~g~~~~-----~~~Q~~~i~~i~~~~~~lv~~~TG-sGKT~~~~~~~~~~l~~~ 86 (394)
T 1fuu_A 21 YKFDDMELDENL----LR----GVFGYGFEEP-----SAIQQRAIMPIIEGHDVLAQAQSG-TGKTGTFSIAALQRIDTS 86 (394)
T ss_dssp CSSGGGCCCHHH----HH----HHHHHTCCSC-----CHHHHHHHHHHHHTCCEEECCCSS-HHHHHHHHHHHHHHCCTT
T ss_pred CChhhcCCCHHH----HH----HHHHcCCCCC-----CHHHHHHHHHHhCCCCEEEECCCC-ChHHHHHHHHHHHHhhcc
Confidence 347777777766 43 4455799998 999999999999999999999999 999999999999887543
Q ss_pred hhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC
Q 008235 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA 325 (573)
Q Consensus 247 ~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~ 325 (573)
. .++++||++||++|+.|+++.+..+. ..++++..++||.....+...+. +++|+|+||++|++++..+.
T Consensus 87 ~-------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~i~v~T~~~l~~~~~~~~ 157 (394)
T 1fuu_A 87 V-------KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQRRR 157 (394)
T ss_dssp C-------CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH--HCSEEEECHHHHHHHHHTTS
T ss_pred C-------CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC--CCCEEEECHHHHHHHHHhCC
Confidence 2 47799999999999999999999874 45899999999999877766665 48999999999999999888
Q ss_pred CCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEE
Q 008235 326 IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQ 402 (573)
Q Consensus 326 ~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~ 402 (573)
+.+.++++||+||||++.+ ...+..++..+++..|++++|||+++.+..+...++..|. .+.+... ......+.+
T Consensus 158 ~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 235 (394)
T 1fuu_A 158 FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV-RILVKKD-ELTLEGIKQ 235 (394)
T ss_dssp SCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCE-EEEECC-----------
T ss_pred cchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCe-EEEecCc-cccCCCceE
Confidence 8899999999999999876 6678889999999999999999999999999999999886 5555443 244456777
Q ss_pred EEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHh
Q 008235 403 SVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEA 477 (573)
Q Consensus 403 ~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~ 477 (573)
.+..+.....+...+..++... . ..++||||+++..++.++..|...++.+.. +||+ +..+++.| +
T Consensus 236 ~~~~~~~~~~~~~~l~~~~~~~----~---~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~r~~~~~~f-~ 306 (394)
T 1fuu_A 236 FYVNVEEEEYKYECLTDLYDSI----S---VTQAVIFCNTRRKVEELTTKLRNDKFTVSA-IYSDLPQQERDTIMKEF-R 306 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEcCchhhHHHHHHHHHhcC----C---CCcEEEEECCHHHHHHHHHHHHHcCCeEEE-eeCCCCHHHHHHHHHHH-H
Confidence 7777765555666665555442 2 579999999999999999999999988875 4664 45589999 8
Q ss_pred cCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCCC
Q 008235 478 DGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQV 557 (573)
Q Consensus 478 ~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~ 557 (573)
+|...++++ +++.+ +|+|+|++++||+|++|.+..+|+||+||+||.|+.|.|++|+++.|...+..+.+++.....+
T Consensus 307 ~~~~~vlv~-T~~~~-~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 384 (394)
T 1fuu_A 307 SGSSRILIS-TDLLA-RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEE 384 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcEEEE-CChhh-cCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccc
Confidence 898888877 56774 8999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCHHHHHh
Q 008235 558 VPDALRDL 565 (573)
Q Consensus 558 vp~~l~~~ 565 (573)
+|..+.++
T Consensus 385 ~~~~~~~~ 392 (394)
T 1fuu_A 385 LPSDIATL 392 (394)
T ss_dssp --------
T ss_pred cCcchhhh
Confidence 98877654
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-49 Score=415.20 Aligned_cols=349 Identities=14% Similarity=0.181 Sum_probs=296.3
Q ss_pred CCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcC-CcEEEEeCCCchhHHHHHHHHHHHHHHh
Q 008235 167 QACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIA 245 (573)
Q Consensus 167 ~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~ 245 (573)
.+|+++++++.+ . +++...||..| +|+|.++++.+++| +++++.|||| ||||++|++|++..+..
T Consensus 6 ~~f~~~~l~~~~----~----~~l~~~g~~~~-----~~~Q~~~i~~~~~~~~~~l~~~~TG-sGKT~~~~~~~~~~~~~ 71 (367)
T 1hv8_A 6 MNFNELNLSDNI----L----NAIRNKGFEKP-----TDIQMKVIPLFLNDEYNIVAQARTG-SGKTASFAIPLIELVNE 71 (367)
T ss_dssp CCGGGSSCCHHH----H----HHHHHHTCCSC-----CHHHHHHHHHHHHTCSEEEEECCSS-SSHHHHHHHHHHHHSCS
T ss_pred CchhhcCCCHHH----H----HHHHHcCCCCC-----CHHHHHHHHHHhCCCCCEEEECCCC-ChHHHHHHHHHHHHhcc
Confidence 346777777666 3 44456799999 99999999999998 7999999999 99999999999987654
Q ss_pred chhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC
Q 008235 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK 324 (573)
Q Consensus 246 ~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~ 324 (573)
. .++++||++||++|+.|+++.+..+. ..++.+..++||.....+...+. +++|+|+||++|.+++..+
T Consensus 72 ~--------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~iiv~T~~~l~~~~~~~ 141 (367)
T 1hv8_A 72 N--------NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK--NANIVVGTPGRILDHINRG 141 (367)
T ss_dssp S--------SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH--TCSEEEECHHHHHHHHHTT
T ss_pred c--------CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC--CCCEEEecHHHHHHHHHcC
Confidence 3 47789999999999999999999984 45889999999999887777665 5899999999999999988
Q ss_pred CCCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceE
Q 008235 325 AIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACII 401 (573)
Q Consensus 325 ~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~ 401 (573)
...+.++++|||||||++.+ ...+..++..+++..|++++|||++.....++..++.++. .+.... ..++.
T Consensus 142 ~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~ 215 (367)
T 1hv8_A 142 TLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYS-FIKAKI-----NANIE 215 (367)
T ss_dssp CSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEE-EEECCS-----SSSSE
T ss_pred CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCe-EEEecC-----CCCce
Confidence 88899999999999999987 5678888888889999999999999998888888888774 444332 23677
Q ss_pred EEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHH
Q 008235 402 QSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVE 476 (573)
Q Consensus 402 ~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~ 476 (573)
+.+..+. ...+...+..++. . . ..++||||+++..++.++..|...|+.+..+ ||+ +..+++.|
T Consensus 216 ~~~~~~~-~~~~~~~l~~~l~----~-~---~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~r~~~~~~f- 284 (367)
T 1hv8_A 216 QSYVEVN-ENERFEALCRLLK----N-K---EFYGLVFCKTKRDTKELASMLRDIGFKAGAI-HGDLSQSQREKVIRLF- 284 (367)
T ss_dssp EEEEECC-GGGHHHHHHHHHC----S-T---TCCEEEECSSHHHHHHHHHHHHHTTCCEEEE-CSSSCHHHHHHHHHHH-
T ss_pred EEEEEeC-hHHHHHHHHHHHh----c-C---CCcEEEEECCHHHHHHHHHHHHhcCCCeEEe-eCCCCHHHHHHHHHHH-
Confidence 8888775 6778776666654 1 2 5799999999999999999999999998864 664 45689999
Q ss_pred hcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCC
Q 008235 477 ADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQ 556 (573)
Q Consensus 477 ~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~ 556 (573)
++|+..++++ +++.+ +|+|+|++++||+|++|.+..+|+||+||+||.|+.|.+++|+++.|...+..|.+.++....
T Consensus 285 ~~~~~~vlv~-T~~~~-~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 362 (367)
T 1hv8_A 285 KQKKIRILIA-TDVMS-RGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIK 362 (367)
T ss_dssp HTTSSSEEEE-CTTHH-HHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCC
T ss_pred HcCCCeEEEE-CChhh-cCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCc
Confidence 8998888777 56663 799999999999999999999999999999999999999999999999999999888765544
Q ss_pred CC
Q 008235 557 VV 558 (573)
Q Consensus 557 ~v 558 (573)
++
T Consensus 363 ~~ 364 (367)
T 1hv8_A 363 KL 364 (367)
T ss_dssp CB
T ss_pred ee
Confidence 43
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1e-49 Score=419.47 Aligned_cols=347 Identities=14% Similarity=0.194 Sum_probs=289.1
Q ss_pred CCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcC--CcEEEEeCCCchhHHHHHHHHHHHHHH
Q 008235 167 QACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSI 244 (573)
Q Consensus 167 ~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~ 244 (573)
.+|+++++++.+ . +++...||..| +|+|.++++.++.| +|++++|||| ||||++|++|++..+.
T Consensus 5 ~~f~~~~l~~~l----~----~~l~~~~~~~~-----~~~Q~~~i~~~~~~~~~~~lv~a~TG-sGKT~~~~~~~~~~~~ 70 (395)
T 3pey_A 5 KSFDELGLAPEL----L----KGIYAMKFQKP-----SKIQERALPLLLHNPPRNMIAQSQSG-TGKTAAFSLTMLTRVN 70 (395)
T ss_dssp CSSTTSCCCHHH----H----HHHHHTTCCSC-----CHHHHHHHHHHHCSSCCCEEEECCTT-SCHHHHHHHHHHHHCC
T ss_pred cCHhhCCCCHHH----H----HHHHHCCCCCC-----CHHHHHHHHHHHcCCCCeEEEECCCC-CcHHHHHHHHHHHHhc
Confidence 347777777766 3 44556899999 99999999999998 9999999999 9999999999998875
Q ss_pred hchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHc
Q 008235 245 ARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL 323 (573)
Q Consensus 245 ~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~ 323 (573)
... .++++|||+||++|+.|+++.+..+.. .++.+..++|+...... . .+++|+|+||++|++++..
T Consensus 71 ~~~-------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~iiv~T~~~l~~~~~~ 138 (395)
T 3pey_A 71 PED-------ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----Q-INAQVIVGTPGTVLDLMRR 138 (395)
T ss_dssp TTC-------CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----C-BCCSEEEECHHHHHHHHHT
T ss_pred cCC-------CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----c-CCCCEEEEcHHHHHHHHHc
Confidence 432 467899999999999999999999844 57888888887643321 2 2689999999999999999
Q ss_pred CCCCCCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccc
Q 008235 324 KAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSAC 399 (573)
Q Consensus 324 ~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~ 399 (573)
+...+.++++|||||||++.+ ...+..+...++.+.|++++|||+++.+..++..++..+. .+.+... ......
T Consensus 139 ~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~ 216 (395)
T 3pey_A 139 KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNAN-TLELQTN-EVNVDA 216 (395)
T ss_dssp TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCE-EECCCGG-GCSCTT
T ss_pred CCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCe-EEEcccc-cccccc
Confidence 888899999999999999875 5677778888889999999999999999999999988885 5555443 345567
Q ss_pred eEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHH
Q 008235 400 IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNS 474 (573)
Q Consensus 400 i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~ 474 (573)
+.+.+..+.....+...+..++.. .. ..++||||+++..|+.++..|...++.+.. +||+ +.++++.
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~~~~----~~---~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~r~~~~~~ 288 (395)
T 3pey_A 217 IKQLYMDCKNEADKFDVLTELYGL----MT---IGSSIIFVATKKTANVLYGKLKSEGHEVSI-LHGDLQTQERDRLIDD 288 (395)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHTT----TT---SSEEEEECSCHHHHHHHHHHHHHTTCCCEE-ECTTSCHHHHHHHHHH
T ss_pred ccEEEEEcCchHHHHHHHHHHHHh----cc---CCCEEEEeCCHHHHHHHHHHHHhcCCcEEE-eCCCCCHHHHHHHHHH
Confidence 888888887677777655554433 23 579999999999999999999999999886 4764 4568999
Q ss_pred HHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCC------CHHHHHHHHhccccCCCcceEEEEeccc-cHHHHHHH
Q 008235 475 VEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFII------SMKNYVEILTSMARHTVSGILHSFFTKD-DAAHAGQM 547 (573)
Q Consensus 475 F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~------s~~~YiqR~GR~gR~g~~G~~i~~~~~~-d~~~~~~l 547 (573)
| ++|...++++ +++.+ +|+|+|++++||+||+|. +..+|+||+||+||.|..|.|++|+.+. +...+..+
T Consensus 289 f-~~g~~~vlv~-T~~~~-~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i 365 (395)
T 3pey_A 289 F-REGRSKVLIT-TNVLA-RGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAI 365 (395)
T ss_dssp H-HTTSCCEEEE-CGGGS-SSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHH
T ss_pred H-HCCCCCEEEE-CChhh-cCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHH
Confidence 9 9999988877 56774 899999999999999999 9999999999999999999999999864 55666767
Q ss_pred HHHHH
Q 008235 548 IEILE 552 (573)
Q Consensus 548 ~~~l~ 552 (573)
.+.+.
T Consensus 366 ~~~~~ 370 (395)
T 3pey_A 366 QKYFG 370 (395)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 66665
No 14
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.7e-50 Score=426.54 Aligned_cols=329 Identities=11% Similarity=0.034 Sum_probs=268.5
Q ss_pred HHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE
Q 008235 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (573)
Q Consensus 183 ~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil 262 (573)
++.+.+.+.+.....| ||+|.++|+.+++|+|++++|||| ||||++|++|++..+. .++++|||
T Consensus 7 ~~~~~~~l~~~~~~~~-----~~~Q~~~i~~i~~~~~~lv~apTG-sGKT~~~l~~~~~~~~----------~~~~~lil 70 (414)
T 3oiy_A 7 YEDFRSFFKKKFGKDL-----TGYQRLWAKRIVQGKSFTMVAPTG-VGKTTFGMMTALWLAR----------KGKKSALV 70 (414)
T ss_dssp HHHHHHHHHHHHSSCC-----CHHHHHHHHHHTTTCCEECCSCSS-SSHHHHHHHHHHHHHT----------TTCCEEEE
T ss_pred HHHHHHHHHHhcCCCC-----CHHHHHHHHHHhcCCCEEEEeCCC-CCHHHHHHHHHHHHhc----------CCCEEEEE
Confidence 3444455555333367 999999999999999999999999 9999999999887651 47899999
Q ss_pred cccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCH---HHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCc
Q 008235 263 VSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAI---DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (573)
Q Consensus 263 ~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~---~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEa 339 (573)
+||++||.|+++.++.+...+++++.++||.+. ..+...+..+.++|+|+||++|.+++.. +.+.++++||||||
T Consensus 71 ~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEa 148 (414)
T 3oiy_A 71 FPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDV 148 (414)
T ss_dssp ESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCH
T ss_pred ECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeCh
Confidence 999999999999999985578999999999998 6667777774599999999999988875 66779999999999
Q ss_pred cccc-------------C-cch-HHHHHHhcC-----------CCCcEEEEecc-CCccHH-HHHHHHhcCCceEEEcCC
Q 008235 340 DSLS-------------K-GDT-LSLIRQSIS-----------GKPHTVVFNDC-LTYTSV-PAVQNLLLGSINRLSLNQ 391 (573)
Q Consensus 340 d~ll-------------~-~~~-l~~Il~~l~-----------~~~q~l~~SAT-~~~~~~-~~~~~~l~~~~~~i~~~~ 391 (573)
|++. . ..+ +..++..++ .+.|+++|||| .|..+. .+...++. +.+..
T Consensus 149 H~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-----~~~~~ 223 (414)
T 3oiy_A 149 DAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTVGR 223 (414)
T ss_dssp HHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-----CCSSC
T ss_pred HhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-----cCcCc
Confidence 9874 2 334 788888776 88999999999 666554 34444433 12222
Q ss_pred CccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHHH
Q 008235 392 SVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHI 471 (573)
Q Consensus 392 ~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 471 (573)
. .....++.+.+..++ +...|.+++... +.++||||+++..|+.++..|...|+.+...+||++.+
T Consensus 224 ~-~~~~~~i~~~~~~~~----~~~~l~~~l~~~--------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~r~- 289 (414)
T 3oiy_A 224 L-VSVARNITHVRISSR----SKEKLVELLEIF--------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKN- 289 (414)
T ss_dssp C-CCCCCSEEEEEESSC----CHHHHHHHHHHH--------CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCHHHH-
T ss_pred c-ccccccchheeeccC----HHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCcchH-
Confidence 1 244567888887764 344556666663 47999999999999999999999999997346887777
Q ss_pred HHHHHhcCCCCCeEEE---EeccccCCCccCC-CCEEEeCCCC--CCHHHHHHHHhccccCC----CcceEEEEeccccH
Q 008235 472 KNSVEADGRKRPAVSM---IDKDHISTAELEE-YEVVIVPDFI--ISMKNYVEILTSMARHT----VSGILHSFFTKDDA 541 (573)
Q Consensus 472 l~~F~~~g~~~~l~~l---vd~~s~rGlDip~-v~~VI~~d~P--~s~~~YiqR~GR~gR~g----~~G~~i~~~~~~d~ 541 (573)
++.| ++|..++++++ ||+. .+|||+|+ |++||+||+| .+..+|+||+||+||.| +.|.|++|+ .|.
T Consensus 290 ~~~f-~~g~~~vLvat~s~T~~~-~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~ 365 (414)
T 3oiy_A 290 FEDF-KVGKINILIGVQAYYGKL-TRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDE 365 (414)
T ss_dssp HHHH-HTTSCSEEEEECCTTCCC-CCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCH
T ss_pred HHHH-hCCCCeEEEEecCcCchh-hccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccH
Confidence 9999 99999998874 5677 48999999 9999999999 99999999999999998 589999999 678
Q ss_pred HHHHHHHHHHH
Q 008235 542 AHAGQMIEILE 552 (573)
Q Consensus 542 ~~~~~l~~~l~ 552 (573)
..+..+.+.+.
T Consensus 366 ~~~~~l~~~~~ 376 (414)
T 3oiy_A 366 EIFESLKTRLL 376 (414)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888888887
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-47 Score=395.33 Aligned_cols=325 Identities=16% Similarity=0.189 Sum_probs=270.3
Q ss_pred HHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc
Q 008235 184 NAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (573)
Q Consensus 184 ~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~ 263 (573)
+.|.+++...||..| +|+|.++++.+++|+++++++||| +|||++|++|++.. +.++||++
T Consensus 3 ~~i~~~l~~~g~~~l-----~~~Q~~~i~~i~~~~~~lv~~~TG-sGKT~~~~~~~~~~-------------~~~~liv~ 63 (337)
T 2z0m_A 3 EKIEQAIREMGFKNF-----TEVQSKTIPLMLQGKNVVVRAKTG-SGKTAAYAIPILEL-------------GMKSLVVT 63 (337)
T ss_dssp HHHHHHHHHTTCCSC-----CHHHHHHHHHHHTTCCEEEECCTT-SSHHHHHHHHHHHH-------------TCCEEEEC
T ss_pred HHHHHHHHHcCCCCC-----CHHHHHHHHHHhcCCCEEEEcCCC-CcHHHHHHHHHHhh-------------cCCEEEEe
Confidence 456777888999999 999999999999999999999999 99999999998852 45799999
Q ss_pred ccHHHHHHHHHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccc
Q 008235 264 SSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342 (573)
Q Consensus 264 PtreLa~Qi~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~l 342 (573)
||++|+.|+++.+..+. ..++.+..++||.....+...+. .++|+|+||++|.+++..+.+.+.++++||+||||++
T Consensus 64 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~ 141 (337)
T 2z0m_A 64 PTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR--NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLM 141 (337)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT--TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC--CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHh
Confidence 99999999999999984 45899999999999887777665 4899999999999999988888899999999999999
Q ss_pred cC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHH
Q 008235 343 SK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419 (573)
Q Consensus 343 l~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 419 (573)
.+ ...+..++..++...+++++|||++..+......++.++. .+... ....++.+.+..+.... +. ...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~-~~--~~~ 213 (337)
T 2z0m_A 142 FEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYE-EIEAC----IGLANVEHKFVHVKDDW-RS--KVQ 213 (337)
T ss_dssp HHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCE-EEECS----GGGGGEEEEEEECSSSS-HH--HHH
T ss_pred hccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCce-eeecc----cccCCceEEEEEeChHH-HH--HHH
Confidence 86 6778888888888999999999999999999999988774 44322 33456777777775332 21 112
Q ss_pred HHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccC
Q 008235 420 VLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHIS 494 (573)
Q Consensus 420 ~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~r 494 (573)
.+ .... ..++||||+++..++.++..|. .+.. +||+ +.++++.| ++|...++++ +++.+ +
T Consensus 214 ~~----~~~~---~~~~lvf~~~~~~~~~l~~~l~----~~~~-~~~~~~~~~r~~~~~~f-~~~~~~vlv~-T~~~~-~ 278 (337)
T 2z0m_A 214 AL----RENK---DKGVIVFVRTRNRVAKLVRLFD----NAIE-LRGDLPQSVRNRNIDAF-REGEYDMLIT-TDVAS-R 278 (337)
T ss_dssp HH----HTCC---CSSEEEECSCHHHHHHHHTTCT----TEEE-ECTTSCHHHHHHHHHHH-HTTSCSEEEE-CHHHH-T
T ss_pred HH----HhCC---CCcEEEEEcCHHHHHHHHHHhh----hhhh-hcCCCCHHHHHHHHHHH-HcCCCcEEEE-cCccc-c
Confidence 22 2223 6899999999999999998886 3443 5664 55689999 8999988877 56774 8
Q ss_pred CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHH
Q 008235 495 TAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQ 553 (573)
Q Consensus 495 GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~ 553 (573)
|+|+|++++||+|++|.+..+|+||+||+||.|+.|.|++|+. .|...++.|.+.++.
T Consensus 279 Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 279 GLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp TCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred CCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999 888888888877653
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.6e-46 Score=414.48 Aligned_cols=330 Identities=12% Similarity=0.094 Sum_probs=256.8
Q ss_pred HHHHHHHHHh-CCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEE
Q 008235 183 LNAIENAMRH-DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (573)
Q Consensus 183 ~~~i~~~l~~-~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Li 261 (573)
.+.+.+.|.. .||..| +|+|.++|+.+++|+|+++++||| +|||++|++|++. ...++||
T Consensus 29 ~~~l~~~L~~~fg~~~~-----rp~Q~~~i~~il~g~d~lv~~pTG-sGKTl~~~lpal~-------------~~g~~lV 89 (591)
T 2v1x_A 29 SGKVKDILQNVFKLEKF-----RPLQLETINVTMAGKEVFLVMPTG-GGKSLCYQLPALC-------------SDGFTLV 89 (591)
T ss_dssp HHHHHHHHHHTSCCCSC-----CTTHHHHHHHHHTTCCEEEECCTT-SCTTHHHHHHHHT-------------SSSEEEE
T ss_pred CHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHcCCCEEEEECCC-ChHHHHHHHHHHH-------------cCCcEEE
Confidence 3445555665 599998 999999999999999999999999 9999999999984 2458999
Q ss_pred EcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHH---h--hcCCCcEEEeCHHHHH------HHHHcCCCCCCC
Q 008235 262 LVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITG---L--RSCEPEFLVSTPERLL------KLVSLKAIDVSG 330 (573)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~---l--~~~~~~IlV~TP~rL~------~~l~~~~~~l~~ 330 (573)
|+||++|+.|+.+.+..+ |+.+..++|+.....+... + ..++++|+|+||++|. +++.. ...+.+
T Consensus 90 isP~~~L~~q~~~~l~~~---gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~ 165 (591)
T 2v1x_A 90 ICPLISLMEDQLMVLKQL---GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARR 165 (591)
T ss_dssp ECSCHHHHHHHHHHHHHH---TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTC
T ss_pred EeCHHHHHHHHHHHHHhc---CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccC
Confidence 999999999999999887 8999999999887655332 2 2347999999999874 23332 345778
Q ss_pred ccEEEEeCcccccC-----cchHHH--HHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEE
Q 008235 331 VSLLVVDRLDSLSK-----GDTLSL--IRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQS 403 (573)
Q Consensus 331 l~~lViDEad~ll~-----~~~l~~--Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~ 403 (573)
+.+|||||||++.+ .+.+.. ++....++.|+++||||+++.+...+..++..+...+.... ...+++...
T Consensus 166 i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~---~~r~nl~~~ 242 (591)
T 2v1x_A 166 FTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS---FNRPNLYYE 242 (591)
T ss_dssp EEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC---CCCTTEEEE
T ss_pred CcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC---CCCcccEEE
Confidence 99999999999986 223322 33333457999999999999988888888876532222221 233455555
Q ss_pred EEEcCC-hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHh
Q 008235 404 VNVCAS-DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEA 477 (573)
Q Consensus 404 ~~~~~~-~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~ 477 (573)
+..... ...+...|.+++.. ... ..++||||+|+..|+.++..|...|+.+..+ ||+ +.++++.| +
T Consensus 243 v~~~~~~~~~~~~~l~~~l~~---~~~---~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~-h~~l~~~~R~~~~~~F-~ 314 (591)
T 2v1x_A 243 VRQKPSNTEDFIEDIVKLING---RYK---GQSGIIYCFSQKDSEQVTVSLQNLGIHAGAY-HANLEPEDKTTVHRKW-S 314 (591)
T ss_dssp EEECCSSHHHHHHHHHHHHTT---TTT---TCEEEEECSSHHHHHHHHHHHHHTTCCEEEE-CTTSCHHHHHHHHHHH-H
T ss_pred EEeCCCcHHHHHHHHHHHHHH---hcc---CCCeEEEeCcHHHHHHHHHHHHHCCCCEEEe-cCCCCHHHHHHHHHHH-H
Confidence 544432 23344444444332 222 5799999999999999999999999999864 664 55689999 9
Q ss_pred cCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHH
Q 008235 478 DGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMI 548 (573)
Q Consensus 478 ~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~ 548 (573)
+|+..++++ |++. .+|||+|+|++||||++|.+++.|+||+||+||.|..|.|++|+++.|...+..++
T Consensus 315 ~g~~~VlVA-T~a~-~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 315 ANEIQVVVA-TVAF-GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp TTSSSEEEE-CTTS-CTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred cCCCeEEEE-echh-hcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 999999887 5576 37999999999999999999999999999999999999999999999887776654
No 17
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=8.1e-47 Score=441.62 Aligned_cols=326 Identities=12% Similarity=0.051 Sum_probs=265.1
Q ss_pred HHHHHHHh-CCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc
Q 008235 185 AIENAMRH-DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (573)
Q Consensus 185 ~i~~~l~~-~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~ 263 (573)
.+.+.+.. .|| .| ||+|.++||.++.|+|++++|||| ||||++|++|++..+. .++++|||+
T Consensus 66 ~~~~~~~~~~gf-~p-----t~iQ~~ai~~il~g~dvlv~ApTG-SGKTl~~l~~il~~~~----------~~~~~Lil~ 128 (1104)
T 4ddu_A 66 DFRSFFKKKFGK-DL-----TGYQRLWAKRIVQGKSFTMVAPTG-VGKTTFGMMTALWLAR----------KGKKSALVF 128 (1104)
T ss_dssp HHHHHHHHHSSS-CC-----CHHHHHHHHHHTTTCCEEECCSTT-CCHHHHHHHHHHHHHT----------TTCCEEEEE
T ss_pred HHHHHHHHhcCC-CC-----CHHHHHHHHHHHcCCCEEEEeCCC-CcHHHHHHHHHHHHHh----------cCCeEEEEe
Confidence 34444433 466 57 999999999999999999999999 9999988888877662 478999999
Q ss_pred ccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCH---HHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcc
Q 008235 264 SSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAI---DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (573)
Q Consensus 264 PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~---~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad 340 (573)
|||+||.|+++.+..|...+++++.++||.+. ..+...+..+.++|+|+||++|++++.. +.++++++|||||||
T Consensus 129 PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH 206 (1104)
T 4ddu_A 129 PTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVD 206 (1104)
T ss_dssp SSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHH
T ss_pred chHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCC
Confidence 99999999999999987668999999999988 7777888874599999999999998875 667899999999998
Q ss_pred cccC--------------cch-HHHHHHhcC-----------CCCcEEEEecc-CCccHHH-HHHHHhcCCceEEEcCCC
Q 008235 341 SLSK--------------GDT-LSLIRQSIS-----------GKPHTVVFNDC-LTYTSVP-AVQNLLLGSINRLSLNQS 392 (573)
Q Consensus 341 ~ll~--------------~~~-l~~Il~~l~-----------~~~q~l~~SAT-~~~~~~~-~~~~~l~~~~~~i~~~~~ 392 (573)
++.+ ..+ +..++..++ .++|+++|||| .|..+.. +...++. +.+...
T Consensus 207 ~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-----i~v~~~ 281 (1104)
T 4ddu_A 207 AVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTVGRL 281 (1104)
T ss_dssp HHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-----CCCCBC
T ss_pred ccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-----EEeccC
Confidence 7653 234 778888777 88999999999 6665543 3333333 233322
Q ss_pred ccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHHHH
Q 008235 393 VASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIK 472 (573)
Q Consensus 393 ~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~l 472 (573)
.....++.+.++.++ +...|..+|... +.++||||+++..|+.++..|...|+.+...+||++.+ +
T Consensus 282 -~~~~~~i~~~~~~~~----k~~~L~~ll~~~--------~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~rr~-l 347 (1104)
T 4ddu_A 282 -VSVARNITHVRISSR----SKEKLVELLEIF--------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKN-F 347 (1104)
T ss_dssp -CCCCCCEEEEEESCC----CHHHHHHHHHHH--------CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSHHHH-H
T ss_pred -CCCcCCceeEEEecC----HHHHHHHHHHhc--------CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCcHHH-H
Confidence 245667888888774 445556667663 47999999999999999999999999997236888888 9
Q ss_pred HHHHhcCCCCCeEEE---EeccccCCCccCC-CCEEEeCCCCC-------------------------------------
Q 008235 473 NSVEADGRKRPAVSM---IDKDHISTAELEE-YEVVIVPDFII------------------------------------- 511 (573)
Q Consensus 473 ~~F~~~g~~~~l~~l---vd~~s~rGlDip~-v~~VI~~d~P~------------------------------------- 511 (573)
+.| ++|+.++|+++ ||++ +||||||+ |++|||||+|.
T Consensus 348 ~~F-~~G~~~VLVatas~Tdvl-arGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 425 (1104)
T 4ddu_A 348 EDF-KVGKINILIGVQAYYGKL-TRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELR 425 (1104)
T ss_dssp HHH-HHTSCSEEEEETTTHHHH-CCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHH
T ss_pred HHH-HCCCCCEEEEecCCCCee-EecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 99999998884 5788 59999999 99999999999
Q ss_pred -----------------------------------CHHHHHHHHhccccCCC----cceEEEEeccccHHHHHHHHHHHH
Q 008235 512 -----------------------------------SMKNYVEILTSMARHTV----SGILHSFFTKDDAAHAGQMIEILE 552 (573)
Q Consensus 512 -----------------------------------s~~~YiqR~GR~gR~g~----~G~~i~~~~~~d~~~~~~l~~~l~ 552 (573)
++.+|+||+|||||.|. .|.+++|+ +|...+..|.+.++
T Consensus 426 e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 426 KIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 88999999999999764 34555555 78888888888886
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-47 Score=417.65 Aligned_cols=348 Identities=14% Similarity=0.161 Sum_probs=255.9
Q ss_pred HHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcC--CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEE
Q 008235 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLL 260 (573)
Q Consensus 183 ~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~L 260 (573)
.+.+.+.+...||..| +|+|.++|+.+++| +|++++|||| ||||++|++|++..+.... .++++|
T Consensus 127 ~~~~~~~l~~~g~~~p-----~~~Q~~ai~~i~~~~~~~~ll~apTG-sGKT~~~~~~il~~l~~~~-------~~~~vL 193 (508)
T 3fho_A 127 XXXXXXXXXXXXXXXX-----XKIQEKALPLLLSNPPRNMIGQSQSG-TGKTAAFALTMLSRVDASV-------PKPQAI 193 (508)
T ss_dssp ------------CEEC-----CCTTSSSHHHHHCSSCCCEEEECCSS-TTSHHHHHHHHHHHSCTTC-------CSCCEE
T ss_pred ccccccccccccccCc-----HHHHHHHHHHHHcCCCCCEEEECCCC-ccHHHHHHHHHHHHHHhCC-------CCceEE
Confidence 4556666777899998 99999999999998 9999999999 9999999999998875432 467899
Q ss_pred EEcccHHHHHHHHHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCc
Q 008235 261 FLVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (573)
Q Consensus 261 il~PtreLa~Qi~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEa 339 (573)
||+||++|+.|+++.+..+. ..++.+...+++...... .. +++|+|+||++|++++..+.+.+.++++||||||
T Consensus 194 vl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEa 268 (508)
T 3fho_A 194 CLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA----KI-DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEA 268 (508)
T ss_dssp EECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CC-CCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCH
T ss_pred EEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccc----cC-CCCEEEECHHHHHHHHHcCCccccCCCEEEEech
Confidence 99999999999999999984 346666666665443221 22 6899999999999999998888999999999999
Q ss_pred ccccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHH
Q 008235 340 DSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL 415 (573)
Q Consensus 340 d~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 415 (573)
|++.+ ...+..++..++.+.|++++|||+++.+..+...++.++. .+.+... ......+.+.+..+.....+..
T Consensus 269 H~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~-~i~~~~~-~~~~~~~~~~~~~~~~~~~k~~ 346 (508)
T 3fho_A 269 DNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNAN-EIRLKTE-ELSVEGIKQLYMDCQSEEHKYN 346 (508)
T ss_dssp HHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCE-EECCCCC-C----CCCCEEEEC--CHHHHH
T ss_pred hhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCe-EEEeccc-cCCcccceEEEEECCchHHHHH
Confidence 99976 5677788888899999999999999999999999998885 5555543 2445567777887766677776
Q ss_pred HHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEec
Q 008235 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDK 490 (573)
Q Consensus 416 ~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~ 490 (573)
.+..++... . ..++||||+++..|+.++..|...++.+.. +||+ +.++++.| ++|...+|++ |++
T Consensus 347 ~l~~ll~~~----~---~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~-~hg~~~~~~R~~il~~f-~~g~~~VLVa-T~~ 416 (508)
T 3fho_A 347 VLVELYGLL----T---IGQSIIFCKKKDTAEEIARRMTADGHTVAC-LTGNLEGAQRDAIMDSF-RVGTSKVLVT-TNV 416 (508)
T ss_dssp HHHHHHC----------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCE-EC-----CTTGGGTHHH-HSSSCCCCEE-CC-
T ss_pred HHHHHHHhc----C---CCcEEEEECCHHHHHHHHHHHHhCCCcEEE-EeCCCCHHHHHHHHHHH-HCCCCeEEEe-CCh
Confidence 666655442 2 579999999999999999999999988876 4664 45589999 9999999887 667
Q ss_pred cccCCCccCCCCEEEeCCCC------CCHHHHHHHHhccccCCCcceEEEEec-cccHHHHHHHHHHHHHcCCCCCHH
Q 008235 491 DHISTAELEEYEVVIVPDFI------ISMKNYVEILTSMARHTVSGILHSFFT-KDDAAHAGQMIEILEQCGQVVPDA 561 (573)
Q Consensus 491 ~s~rGlDip~v~~VI~~d~P------~s~~~YiqR~GR~gR~g~~G~~i~~~~-~~d~~~~~~l~~~l~~~~~~vp~~ 561 (573)
.+ +|+|+|++++||+||+| .++.+|+||+||+||.|+.|.|++|+. +.+...+..+.+.+......+|.+
T Consensus 417 l~-~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 417 IA-RGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp -----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred hh-cCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 73 89999999999999999 889999999999999999999999998 456778888888888777777753
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.5e-46 Score=413.05 Aligned_cols=321 Identities=12% Similarity=0.052 Sum_probs=244.4
Q ss_pred HHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHH
Q 008235 190 MRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (573)
Q Consensus 190 l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa 269 (573)
.+..|| .| ||+|..++|.+++|+ |+.|+|| +|||++|+||++...+ .|+.++||+||||||
T Consensus 77 ~r~lG~-~p-----t~VQ~~~ip~ll~G~--Iaea~TG-eGKTlaf~LP~~l~aL----------~g~~vlVltptreLA 137 (844)
T 1tf5_A 77 RRVTGM-FP-----FKVQLMGGVALHDGN--IAEMKTG-EGKTLTSTLPVYLNAL----------TGKGVHVVTVNEYLA 137 (844)
T ss_dssp HHHHSC-CC-----CHHHHHHHHHHHTTS--EEECCTT-SCHHHHHHHHHHHHHT----------TSSCEEEEESSHHHH
T ss_pred HHHcCC-CC-----cHHHHHhhHHHhCCC--EEEccCC-cHHHHHHHHHHHHHHH----------cCCCEEEEeCCHHHH
Confidence 345799 88 999999999999999 9999999 9999999999985433 367899999999999
Q ss_pred HHHHHHHhhh-hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcC------CCCCCCccEEEEeCccc
Q 008235 270 AKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLK------AIDVSGVSLLVVDRLDS 341 (573)
Q Consensus 270 ~Qi~~~~~~l-~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~------~~~l~~l~~lViDEad~ 341 (573)
.|+++++..| ..+|+++++++||.+...+ .+.. ++||+|||||+| .|+|..+ .+.++.+.++||||||+
T Consensus 138 ~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r--~~~~-~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~ 214 (844)
T 1tf5_A 138 SRDAEQMGKIFEFLGLTVGLNLNSMSKDEK--REAY-AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDS 214 (844)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCTTSCHHHH--HHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHH
T ss_pred HHHHHHHHHHHhhcCCeEEEEeCCCCHHHH--HHhc-CCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhh
Confidence 9999999998 4569999999999986543 3344 699999999999 7777653 36679999999999999
Q ss_pred cc-C------------------cchHHHHHHhcC---------CCCcEE-----------------EEeccCCcc---HH
Q 008235 342 LS-K------------------GDTLSLIRQSIS---------GKPHTV-----------------VFNDCLTYT---SV 373 (573)
Q Consensus 342 ll-~------------------~~~l~~Il~~l~---------~~~q~l-----------------~~SAT~~~~---~~ 373 (573)
|| | ..++..|+..++ +.+|++ +||||++.. +.
T Consensus 215 mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~ 294 (844)
T 1tf5_A 215 ILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHIN 294 (844)
T ss_dssp HHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHH
T ss_pred hhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHH
Confidence 98 4 157788888887 478888 999998753 33
Q ss_pred HH--HHHHhcCCceEEE-------cCCC----------------------------ccccccceE---------------
Q 008235 374 PA--VQNLLLGSINRLS-------LNQS----------------------------VASQSACII--------------- 401 (573)
Q Consensus 374 ~~--~~~~l~~~~~~i~-------~~~~----------------------------~~~~~~~i~--------------- 401 (573)
.. +..++.....++. ++.. ...+...|.
T Consensus 295 ~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmT 374 (844)
T 1tf5_A 295 QALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMT 374 (844)
T ss_dssp HHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCC
Confidence 22 2233321111110 0000 000111111
Q ss_pred --------------------------------EEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHH
Q 008235 402 --------------------------------QSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNL 449 (573)
Q Consensus 402 --------------------------------~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l 449 (573)
+.++++ ...+|+..|...+...... +.++||||+|+..++.|
T Consensus 375 GTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~-~~~~K~~al~~~i~~~~~~-----~~pvLVft~s~~~se~L 448 (844)
T 1tf5_A 375 GTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYR-TMEGKFKAVAEDVAQRYMT-----GQPVLVGTVAVETSELI 448 (844)
T ss_dssp SCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHHH-----TCCEEEEESCHHHHHHH
T ss_pred cccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhc-----CCcEEEEECCHHHHHHH
Confidence 113444 3678998888888764332 45899999999999999
Q ss_pred HHHHHHCCCCeeeecCCCHHHHHHHH-HhcCCC-CCeEEEEeccccCCCccC--------CCCEEEeCCCCCCHHHHHHH
Q 008235 450 VSTLKCKGYSISTGSNCIVSHIKNSV-EADGRK-RPAVSMIDKDHISTAELE--------EYEVVIVPDFIISMKNYVEI 519 (573)
Q Consensus 450 ~~~L~~~g~~~~~~~~~~~~~~l~~F-~~~g~~-~~l~~lvd~~s~rGlDip--------~v~~VI~~d~P~s~~~YiqR 519 (573)
+..|...|+++..+ ||++.+..... .+.|+. .++++ ||++ +||+||+ ++.|||||++|.+.+.|+||
T Consensus 449 s~~L~~~gi~~~vL-hg~~~~rEr~ii~~ag~~g~VlIA-TdmA-gRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr 525 (844)
T 1tf5_A 449 SKLLKNKGIPHQVL-NAKNHEREAQIIEEAGQKGAVTIA-TNMA-GRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQL 525 (844)
T ss_dssp HHHHHTTTCCCEEE-CSSCHHHHHHHHTTTTSTTCEEEE-ETTS-STTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHH
T ss_pred HHHHHHCCCCEEEe-eCCccHHHHHHHHHcCCCCeEEEe-CCcc-ccCcCccccchhhhcCCcEEEEecCCCCHHHHHhh
Confidence 99999999999875 78765532221 124433 44444 6999 5999999 88899999999999999999
Q ss_pred HhccccCCCcceEEEEeccccH
Q 008235 520 LTSMARHTVSGILHSFFTKDDA 541 (573)
Q Consensus 520 ~GR~gR~g~~G~~i~~~~~~d~ 541 (573)
+|||||+|.+|.+++|++.+|.
T Consensus 526 ~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 526 RGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HTTSSGGGCCEEEEEEEETTSS
T ss_pred cCccccCCCCCeEEEEecHHHH
Confidence 9999999999999999998763
No 20
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=8.5e-45 Score=396.37 Aligned_cols=323 Identities=14% Similarity=0.123 Sum_probs=250.6
Q ss_pred HHHHHHHh-CCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc
Q 008235 185 AIENAMRH-DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (573)
Q Consensus 185 ~i~~~l~~-~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~ 263 (573)
.+.+.|.+ .||..+ +|+|.++|+.+++|+|+++++||| +|||++|++|++. ....+|||+
T Consensus 12 ~~~~~l~~~~g~~~~-----r~~Q~~~i~~il~g~d~lv~apTG-sGKTl~~~lp~l~-------------~~g~~lvi~ 72 (523)
T 1oyw_A 12 GAKQVLQETFGYQQF-----RPGQEEIIDTVLSGRDCLVVMPTG-GGKSLCYQIPALL-------------LNGLTVVVS 72 (523)
T ss_dssp HHHHHHHHTTCCSSC-----CTTHHHHHHHHHTTCCEEEECSCH-HHHHHHHHHHHHH-------------SSSEEEEEC
T ss_pred HHHHHHHHHhCCCCC-----CHHHHHHHHHHHcCCCEEEECCCC-cHHHHHHHHHHHH-------------hCCCEEEEC
Confidence 34455555 699888 999999999999999999999999 9999999999983 134799999
Q ss_pred ccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcc
Q 008235 264 SSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (573)
Q Consensus 264 PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad 340 (573)
|+++|+.|+.+.+..+ |+.+..++|+....... ..+..+.++|+|+||++|........+...++.+|||||||
T Consensus 73 P~~aL~~q~~~~l~~~---gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH 149 (523)
T 1oyw_A 73 PLISLMKDQVDQLQAN---GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAH 149 (523)
T ss_dssp SCHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGG
T ss_pred ChHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcc
Confidence 9999999999888876 88999999988765543 34445579999999999953221122345789999999999
Q ss_pred cccC-----c---chHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHh--cCCceEEEcCCCccccccceEEEEEEcCCh
Q 008235 341 SLSK-----G---DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL--LGSINRLSLNQSVASQSACIIQSVNVCASD 410 (573)
Q Consensus 341 ~ll~-----~---~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~ 410 (573)
++.+ . ..+..+...+ ++.+++++|||++..+...+..++ .+|. +.+.. ....++...+.. .
T Consensus 150 ~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~--~~~~~---~~r~~l~~~v~~---~ 220 (523)
T 1oyw_A 150 CISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPL--IQISS---FDRPNIRYMLME---K 220 (523)
T ss_dssp GGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCE--EEECC---CCCTTEEEEEEE---C
T ss_pred ccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCe--EEeCC---CCCCceEEEEEe---C
Confidence 9986 2 2233444444 468999999999988765444444 3443 33332 122345443333 2
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeE
Q 008235 411 EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAV 485 (573)
Q Consensus 411 ~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~ 485 (573)
..+...+.+++... . ..++||||+|++.|+.++..|...|+.+.. +||. +.++++.| ++|+..+++
T Consensus 221 ~~~~~~l~~~l~~~----~---~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~-~h~~l~~~~R~~~~~~f-~~g~~~vlV 291 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQ----R---GKSGIIYCNSRAKVEDTAARLQSKGISAAA-YHAGLENNVRADVQEKF-QRDDLQIVV 291 (523)
T ss_dssp SSHHHHHHHHHHHT----T---TCCEEEECSSHHHHHHHHHHHHHTTCCEEE-ECTTSCHHHHHHHHHHH-HTTSCSEEE
T ss_pred CCHHHHHHHHHHhc----C---CCcEEEEeCCHHHHHHHHHHHHHCCCCEEE-ecCCCCHHHHHHHHHHH-HcCCCeEEE
Confidence 34565666666542 2 579999999999999999999999999886 4664 55689999 899999887
Q ss_pred EEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHH
Q 008235 486 SMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIE 549 (573)
Q Consensus 486 ~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~ 549 (573)
+ |++.+ +|||+|+|++||||++|.++++|+||+||+||.|..|.|++|+++.|...++.+..
T Consensus 292 a-T~a~~-~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 292 A-TVAFG-MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp E-CTTSC-TTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred E-echhh-CCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 7 55663 79999999999999999999999999999999999999999999998877766554
No 21
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-45 Score=428.51 Aligned_cols=310 Identities=10% Similarity=0.050 Sum_probs=238.3
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcC
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF 282 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~ 282 (573)
++|+|.++|+.++.|+|+|++|||| ||||++|++|++..+. .+.++||++||++|+.|+++.+..+..
T Consensus 185 ltp~Q~~AI~~i~~g~dvLV~ApTG-SGKTlva~l~i~~~l~----------~g~rvlvl~PtraLa~Q~~~~l~~~~~- 252 (1108)
T 3l9o_A 185 LDPFQDTAISCIDRGESVLVSAHTS-AGKTVVAEYAIAQSLK----------NKQRVIYTSPIKALSNQKYRELLAEFG- 252 (1108)
T ss_dssp CCHHHHHHHHHHTTTCCEEEECCSS-SHHHHHHHHHHHHHHH----------TTCEEEEEESSHHHHHHHHHHHHHHTS-
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCC-CChHHHHHHHHHHHHh----------cCCeEEEEcCcHHHHHHHHHHHHHHhC-
Confidence 4999999999999999999999999 9999999999998874 467999999999999999999998632
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcCCCC
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKP 359 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~ 359 (573)
.++.++|+.... . +++|+|+|||+|++++..+...+.++++|||||||+|.+ ...+..++..++..+
T Consensus 253 --~VglltGd~~~~-------~-~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~ 322 (1108)
T 3l9o_A 253 --DVGLMTGDITIN-------P-DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 322 (1108)
T ss_dssp --SEEEECSSCBCC-------C-SCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTS
T ss_pred --CccEEeCccccC-------C-CCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCc
Confidence 577788887633 2 689999999999999999888899999999999999998 677888999999999
Q ss_pred cEEEEeccCCcc--HHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCCh--------h------------------
Q 008235 360 HTVVFNDCLTYT--SVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASD--------E------------------ 411 (573)
Q Consensus 360 q~l~~SAT~~~~--~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~--------~------------------ 411 (573)
|+++||||+|+. +..++..+...|...+..... ...+.++++..... .
T Consensus 323 qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~ 398 (1108)
T 3l9o_A 323 RYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 398 (1108)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC----SSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC---
T ss_pred eEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC----cccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhh
Confidence 999999999886 335555666666533333221 11233333221100 0
Q ss_pred ----------------------HH---HHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCe------
Q 008235 412 ----------------------EK---ILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI------ 460 (573)
Q Consensus 412 ----------------------~k---~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~------ 460 (573)
.+ ...+..++..+.... ..++||||+++..|+.++..|...++..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~----~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~ 474 (1108)
T 3l9o_A 399 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKK----YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEA 474 (1108)
T ss_dssp --------------------------CHHHHHHHHHHHHHTT----CCCEEEEESCHHHHHHHHHHTCSHHHHCC----C
T ss_pred hcccccccccccccccccccccccccchhHHHHHHHHHHhcC----CCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHH
Confidence 00 233444444443322 4799999999999999999886543331
Q ss_pred --------------------------------eeecCCCH-----HHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCE
Q 008235 461 --------------------------------STGSNCIV-----SHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEV 503 (573)
Q Consensus 461 --------------------------------~~~~~~~~-----~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~ 503 (573)
+..+||.+ ..+++.| ++|..++|++ |+++ ++|||+|++++
T Consensus 475 i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F-~~G~ikVLVA-T~vl-a~GIDiP~v~~ 551 (1108)
T 3l9o_A 475 LTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILF-QEGFLKVLFA-TETF-SIGLNMPAKTV 551 (1108)
T ss_dssp HHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHH-HHTCCCEEEE-ESCC-CSCCCC--CEE
T ss_pred HHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHH-hCCCCeEEEE-CcHH-hcCCCCCCceE
Confidence 23467754 4589999 9999999988 6788 48999999999
Q ss_pred EEeCCC--------CCCHHHHHHHHhccccCC--CcceEEEEeccc-cHHHHH
Q 008235 504 VIVPDF--------IISMKNYVEILTSMARHT--VSGILHSFFTKD-DAAHAG 545 (573)
Q Consensus 504 VI~~d~--------P~s~~~YiqR~GR~gR~g--~~G~~i~~~~~~-d~~~~~ 545 (573)
||+|+. |.+..+|+||+|||||.| ..|.|++++++. +...+.
T Consensus 552 VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~ 604 (1108)
T 3l9o_A 552 VFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAK 604 (1108)
T ss_dssp EESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHH
T ss_pred EEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHH
Confidence 998876 447889999999999999 689999998875 333333
No 22
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=4.4e-46 Score=435.49 Aligned_cols=339 Identities=13% Similarity=0.122 Sum_probs=270.4
Q ss_pred ccccCCChHHHHHhHHHHHHHHHh-CCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhch
Q 008235 169 CEKLDCPSKFLILCLNAIENAMRH-DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARK 247 (573)
Q Consensus 169 ~~~~~~p~~~~~~~~~~i~~~l~~-~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~ 247 (573)
+....+++.+ .++.+.+.+.+ .||. + |+|.++||.++.|+|++++|||| ||||+ |++|++..+..
T Consensus 32 ~~~~~~~~~~---~~~~~~~~~~~~~g~~------p-~iQ~~ai~~il~g~dvlv~apTG-SGKTl-~~lp~l~~~~~-- 97 (1054)
T 1gku_B 32 ASLCLFPEDF---LLKEFVEFFRKCVGEP------R-AIQKMWAKRILRKESFAATAPTG-VGKTS-FGLAMSLFLAL-- 97 (1054)
T ss_dssp CCCSCCTTHH---HHHHHHHHHHTTTCSC------C-HHHHHHHHHHHTTCCEECCCCBT-SCSHH-HHHHHHHHHHT--
T ss_pred cccccccccc---chHHHHHHHHHhcCCC------H-HHHHHHHHHHHhCCCEEEEcCCC-CCHHH-HHHHHHHHHhh--
Confidence 3345566655 24455555443 3442 5 89999999999999999999999 99998 99999988764
Q ss_pred hccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh-cCCc----EEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHH
Q 008235 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-AFGI----HTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLK 319 (573)
Q Consensus 248 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~-~~~i----~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~ 319 (573)
.++++|||+|||+||.|+++.++.+. ..++ ++++++||.+...+ ...+.. ++|+|+|||+|++
T Consensus 98 -------~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~ 168 (1054)
T 1gku_B 98 -------KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSK 168 (1054)
T ss_dssp -------TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHH
T ss_pred -------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHH
Confidence 37899999999999999999999984 4577 89999999987764 344444 8999999999999
Q ss_pred HHHcCCCCCCCccEEEEeCcccccC-cchHHHHHHhc-----------CCCCcEEEEeccCCccHHHHHHHHhcCCceEE
Q 008235 320 LVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSI-----------SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRL 387 (573)
Q Consensus 320 ~l~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l-----------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i 387 (573)
++.+ ++++++|||||||+|++ ...++.++..+ +..+|+++||||++.. ..++..++.++. .+
T Consensus 169 ~l~~----L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~-~i 242 (1054)
T 1gku_B 169 HYRE----LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLL-NF 242 (1054)
T ss_dssp CSTT----SCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHH-CC
T ss_pred HHHH----hccCCEEEEeChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcce-EE
Confidence 8765 67999999999999998 78888888777 3568999999999987 655555665553 33
Q ss_pred EcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC
Q 008235 388 SLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467 (573)
Q Consensus 388 ~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~ 467 (573)
.+... .....++.+.++. ..+...|.+++... +.++||||+|+..|+.++..|... +.+.. +||+
T Consensus 243 ~v~~~-~~~~~~i~~~~~~----~~k~~~L~~ll~~~--------~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~-lhg~ 307 (1054)
T 1gku_B 243 DIGSS-RITVRNVEDVAVN----DESISTLSSILEKL--------GTGGIIYARTGEEAEEIYESLKNK-FRIGI-VTAT 307 (1054)
T ss_dssp CCSCC-EECCCCEEEEEES----CCCTTTTHHHHTTS--------CSCEEEEESSHHHHHHHHHTTTTS-SCEEE-CTTS
T ss_pred EccCc-ccCcCCceEEEec----hhHHHHHHHHHhhc--------CCCEEEEEcCHHHHHHHHHHHhhc-cCeeE-Eecc
Confidence 44332 2344567777762 33444455555432 468999999999999999999988 88775 6999
Q ss_pred HHHHHHHHHhcCCCCCeEEE---EeccccCCCccCCC-CEEEeCCCC---------------------------------
Q 008235 468 VSHIKNSVEADGRKRPAVSM---IDKDHISTAELEEY-EVVIVPDFI--------------------------------- 510 (573)
Q Consensus 468 ~~~~l~~F~~~g~~~~l~~l---vd~~s~rGlDip~v-~~VI~~d~P--------------------------------- 510 (573)
+.++++.| ++|+.++|+++ +|++ .+|||+|+| ++|||||+|
T Consensus 308 ~~~~l~~F-~~G~~~VLVaTas~Tdv~-~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (1054)
T 1gku_B 308 KKGDYEKF-VEGEIDHLIGTAHYYGTL-VRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERL 385 (1054)
T ss_dssp SSHHHHHH-HHTSCSEEEEECC-------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTT
T ss_pred HHHHHHHH-HcCCCcEEEEecCCCCee-EeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHH
Confidence 99999999 99999999885 6788 489999996 999999999
Q ss_pred --------------------------------------CCHHHHHHHHhccccCCCcce--EEEEeccccHHHHHHHHHH
Q 008235 511 --------------------------------------ISMKNYVEILTSMARHTVSGI--LHSFFTKDDAAHAGQMIEI 550 (573)
Q Consensus 511 --------------------------------------~s~~~YiqR~GR~gR~g~~G~--~i~~~~~~d~~~~~~l~~~ 550 (573)
.+..+|+||+|||||.|..|. +++|+...|...+..|.+.
T Consensus 386 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~ 465 (1054)
T 1gku_B 386 LPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIER 465 (1054)
T ss_dssp CTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHH
Confidence 799999999999999988764 8888888899999999998
Q ss_pred HHH
Q 008235 551 LEQ 553 (573)
Q Consensus 551 l~~ 553 (573)
++.
T Consensus 466 l~~ 468 (1054)
T 1gku_B 466 AKL 468 (1054)
T ss_dssp HHT
T ss_pred Hhh
Confidence 885
No 23
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.5e-44 Score=398.80 Aligned_cols=315 Identities=11% Similarity=0.037 Sum_probs=218.2
Q ss_pred hCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHH
Q 008235 192 HDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAK 271 (573)
Q Consensus 192 ~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Q 271 (573)
..|. .| ||+|..++|.++.|+ |+.++|| ||||++|++|++.... .++.++||+|||+||.|
T Consensus 70 ~lg~-~p-----~~VQ~~~i~~ll~G~--Iaem~TG-sGKTlaf~LP~l~~~l----------~g~~vlVltPTreLA~Q 130 (853)
T 2fsf_A 70 VFGM-RH-----FDVQLLGGMVLNERC--IAEMRTG-EGKTLTATLPAYLNAL----------TGKGVHVVTVNDYLAQR 130 (853)
T ss_dssp HHSC-CC-----CHHHHHHHHHHHSSE--EEECCTT-SCHHHHHHHHHHHHHT----------TSSCCEEEESSHHHHHH
T ss_pred HcCC-CC-----ChHHHhhcccccCCe--eeeecCC-chHHHHHHHHHHHHHH----------cCCcEEEEcCCHHHHHH
Confidence 3453 77 999999999999998 9999999 9999999999996543 36689999999999999
Q ss_pred HHHHHhhh-hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcCC------CCCCCccEEEEeCccccc
Q 008235 272 VRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLKA------IDVSGVSLLVVDRLDSLS 343 (573)
Q Consensus 272 i~~~~~~l-~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~~------~~l~~l~~lViDEad~ll 343 (573)
+++++..| ..+|+++++++||.+.. .+.+.. +++|+|||||+| .|+|..+. +.++++.++||||||+|+
T Consensus 131 ~~e~~~~l~~~lgl~v~~i~GG~~~~--~r~~~~-~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 131 DAENNRPLFEFLGLTVGINLPGMPAP--AKREAY-AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp HHHHHHHHHHHTTCCEEECCTTCCHH--HHHHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCHH--HHHHhc-CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 99999998 55699999999999864 344554 699999999999 79887653 667999999999999999
Q ss_pred -C------------------cchHHHHHHhcCC--------------------CCcEE----------------------
Q 008235 344 -K------------------GDTLSLIRQSISG--------------------KPHTV---------------------- 362 (573)
Q Consensus 344 -~------------------~~~l~~Il~~l~~--------------------~~q~l---------------------- 362 (573)
+ ...+..|+..++. .+|++
T Consensus 208 iD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~ 287 (853)
T 2fsf_A 208 IDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEG 287 (853)
T ss_dssp TTTTTCEEEEEEC-------------------------------------------------------------------
T ss_pred HhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCccccc
Confidence 3 2467788887764 56664
Q ss_pred --EEeccCCccHHHH-----HHHHhcCCc------------------------------------eEEEcCCCccccccc
Q 008235 363 --VFNDCLTYTSVPA-----VQNLLLGSI------------------------------------NRLSLNQSVASQSAC 399 (573)
Q Consensus 363 --~~SAT~~~~~~~~-----~~~~l~~~~------------------------------------~~i~~~~~~~~~~~~ 399 (573)
+||||++..+..+ +..++...+ ..+.+... +.+...
T Consensus 288 ~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e-~~tla~ 366 (853)
T 2fsf_A 288 ESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNE-NQTLAS 366 (853)
T ss_dssp ---------------------------------------------------------------------CCCC-CEEEEE
T ss_pred ccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceeccc-ccccce
Confidence 8999987532221 111111000 01122111 122223
Q ss_pred eEE-----------------------------------------------EEEEcCChhHHHHHHHHHHHHHhccCCCCC
Q 008235 400 IIQ-----------------------------------------------SVNVCASDEEKILKGIQVLDHAYGDHFHSE 432 (573)
Q Consensus 400 i~~-----------------------------------------------~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~ 432 (573)
|.+ .++++ ....|+..|...+......
T Consensus 367 It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~-~~~~K~~al~~~i~~~~~~----- 440 (853)
T 2fsf_A 367 ITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYM-TEAEKIQAIIEDIKERTAK----- 440 (853)
T ss_dssp EEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHTT-----
T ss_pred eehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEe-CHHHHHHHHHHHHHHHhcC-----
Confidence 331 13444 3678998888888765432
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHHH-----HHHHHhcCCCCCeEEEEeccccCCCccCCC------
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHI-----KNSVEADGRKRPAVSMIDKDHISTAELEEY------ 501 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~-----l~~F~~~g~~~~l~~lvd~~s~rGlDip~v------ 501 (573)
+.++||||+|+..++.|+..|...|+++.++ ||+..+. .+.| +.| .++++ ||++ +||+||+..
T Consensus 441 gqpvLVft~sie~se~Ls~~L~~~gi~~~vL-nak~~~rEa~iia~ag-r~G--~VtIA-TnmA-gRGtDI~l~gn~~~~ 514 (853)
T 2fsf_A 441 GQPVLVGTISIEKSELVSNELTKAGIKHNVL-NAKFHANEAAIVAQAG-YPA--AVTIA-TNMA-GRGTDIVLGGSWQAE 514 (853)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHTTCCCEEC-CTTCHHHHHHHHHTTT-STT--CEEEE-ESCC-SSCSCCCTTCCHHHH
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCCCEEEe-cCChhHHHHHHHHhcC-CCC--eEEEe-cccc-cCCcCccCCCchHhh
Confidence 4589999999999999999999999999875 7765542 3334 333 34444 6999 599999974
Q ss_pred -------------------------------CEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccH
Q 008235 502 -------------------------------EVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541 (573)
Q Consensus 502 -------------------------------~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~ 541 (573)
.|||+|++|.|...|+||+|||||.|.+|.+++|++..|.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 515 VAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 6999999999999999999999999999999999998763
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=5.3e-45 Score=412.85 Aligned_cols=341 Identities=10% Similarity=0.090 Sum_probs=226.6
Q ss_pred HHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccH
Q 008235 187 ENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQ 266 (573)
Q Consensus 187 ~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 266 (573)
..++...||..| +|+|.++++.++.|+|+|+++||| +|||++|++|+++.+...+.. .+.++|||+||+
T Consensus 3 ~~~l~~~g~~~l-----r~~Q~~~i~~~l~g~~~iv~~~TG-sGKTl~~~~~i~~~l~~~~~~-----~~~~~lvl~Pt~ 71 (696)
T 2ykg_A 3 VSDTNLYSPFKP-----RNYQLELALPAMKGKNTIICAPTG-CGKTFVSLLICEHHLKKFPQG-----QKGKVVFFANQI 71 (696)
T ss_dssp ----CTTC--CC-----CHHHHHHHHHHHTTCCEEEECCTT-SSHHHHHHHHHHHHHHHSCTT-----CCCCEEEECSSH
T ss_pred CCcccccCCCCc-----cHHHHHHHHHHHcCCCEEEEcCCC-chHHHHHHHHHHHHHHhCccC-----CCCeEEEEECCH
Confidence 345677899999 999999999999999999999999 999999999999988754311 346899999999
Q ss_pred HHHHHHHHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCC-CCCCccEEEEeCcccccC
Q 008235 267 EKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI-DVSGVSLLVVDRLDSLSK 344 (573)
Q Consensus 267 eLa~Qi~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~-~l~~l~~lViDEad~ll~ 344 (573)
+|+.|+.+.+..+. ..++++..++||.....+...+.. +++|+|+||++|++++..+.+ .+.++++|||||||++.+
T Consensus 72 ~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~ 150 (696)
T 2ykg_A 72 PVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSK 150 (696)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHH-TCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCST
T ss_pred HHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhcc-CCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccC
Confidence 99999999999984 358999999999877666666666 799999999999999998876 789999999999999987
Q ss_pred cchHHHHH----Hh-----cCCCCcEEEEeccCCc-------c-HHHHHHH---------------------HhcCCceE
Q 008235 345 GDTLSLIR----QS-----ISGKPHTVVFNDCLTY-------T-SVPAVQN---------------------LLLGSINR 386 (573)
Q Consensus 345 ~~~l~~Il----~~-----l~~~~q~l~~SAT~~~-------~-~~~~~~~---------------------~l~~~~~~ 386 (573)
...+..++ .. .++.+|++++|||+.. . +..+... +...|...
T Consensus 151 ~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~ 230 (696)
T 2ykg_A 151 QHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKF 230 (696)
T ss_dssp TCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEE
T ss_pred cccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCcee
Confidence 22222222 21 2467899999999871 1 1111111 11112100
Q ss_pred E-EcCCCc------------------------------------------------------------------------
Q 008235 387 L-SLNQSV------------------------------------------------------------------------ 393 (573)
Q Consensus 387 i-~~~~~~------------------------------------------------------------------------ 393 (573)
+ .+....
T Consensus 231 ~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (696)
T 2ykg_A 231 FRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 310 (696)
T ss_dssp EEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHH
T ss_pred EEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHH
Confidence 0 000000
Q ss_pred ------------------------------------cccccceEEEEEE---------------cCChhHHHHHHHHHHH
Q 008235 394 ------------------------------------ASQSACIIQSVNV---------------CASDEEKILKGIQVLD 422 (573)
Q Consensus 394 ------------------------------------~~~~~~i~~~~~~---------------~~~~~~k~~~l~~~L~ 422 (573)
......+.+.+.. +.....|...|.++|.
T Consensus 311 ~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~ 390 (696)
T 2ykg_A 311 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 390 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 0000011111100 0013457777888887
Q ss_pred HHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCC----CCeeeec-------CC-----CHHHHHHHHHhc-CCCCCeE
Q 008235 423 HAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKG----YSISTGS-------NC-----IVSHIKNSVEAD-GRKRPAV 485 (573)
Q Consensus 423 ~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g----~~~~~~~-------~~-----~~~~~l~~F~~~-g~~~~l~ 485 (573)
..+.... ..++||||+++..|+.|+..|...+ +.+..++ |+ ++.++++.| ++ |..++|+
T Consensus 391 ~~~~~~~---~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F-~~~g~~~vLV 466 (696)
T 2ykg_A 391 EEYHLNP---ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILI 466 (696)
T ss_dssp HHHTTCT---TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------------------CCSCSE
T ss_pred HHhccCC---CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHH-HhcCCccEEE
Confidence 7654434 6799999999999999999999988 7777653 33 355689999 76 9999988
Q ss_pred EEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHH
Q 008235 486 SMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQM 547 (573)
Q Consensus 486 ~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l 547 (573)
+ |+++. +|||+|+|++||+||+|.+.++|+||+|| ||. +.|.++.|+++.+......+
T Consensus 467 a-T~v~~-~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 467 A-TSVAD-EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp E-EESSC-CC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred E-echhh-cCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 8 67884 89999999999999999999999999999 998 78999999998876554444
No 25
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=9e-44 Score=391.67 Aligned_cols=325 Identities=10% Similarity=0.099 Sum_probs=205.2
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-h
Q 008235 202 FVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280 (573)
Q Consensus 202 ~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~ 280 (573)
.++|+|.++++.++.|+|+++++||| ||||++|++|++..+...+. ..++++|||+||++|+.|+++.+..+ .
T Consensus 7 ~~~~~Q~~~i~~~~~~~~~l~~~~tG-sGKT~~~~~~~~~~~~~~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 7 KARSYQIELAQPAINGKNALICAPTG-SGKTFVSILICEHHFQNMPA-----GRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp -CCHHHHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHHHTCCS-----SCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCC-ChHHHHHHHHHHHHHHhCcc-----cCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 34999999999999999999999999 99999999999998876431 13778999999999999999999997 4
Q ss_pred cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCC-CCCCccEEEEeCcccccCcchHHHHHHhc----
Q 008235 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI-DVSGVSLLVVDRLDSLSKGDTLSLIRQSI---- 355 (573)
Q Consensus 281 ~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~-~l~~l~~lViDEad~ll~~~~l~~Il~~l---- 355 (573)
..++++..++||.....+...+.. +++|+|+||++|.+++..+.+ .+.++++|||||||++.+...+..++..+
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 159 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 159 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHH-HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhC-CCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhh
Confidence 458999999999987776666666 699999999999999998877 79999999999999999721233332211
Q ss_pred ----CCCCcEEEEeccCCcc----HH-------HHHHH------------------HhcCCceEE-EcCCCccccc----
Q 008235 356 ----SGKPHTVVFNDCLTYT----SV-------PAVQN------------------LLLGSINRL-SLNQSVASQS---- 397 (573)
Q Consensus 356 ----~~~~q~l~~SAT~~~~----~~-------~~~~~------------------~l~~~~~~i-~~~~~~~~~~---- 397 (573)
.+.+|+++||||++.. .. .+... +...|...+ ..........
T Consensus 160 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (556)
T 4a2p_A 160 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 239 (556)
T ss_dssp HCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHH
T ss_pred hcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHH
Confidence 4568999999999542 11 11111 111121000 0000000000
Q ss_pred ----c-------------ceEE-------------EE-------------------------------------------
Q 008235 398 ----A-------------CIIQ-------------SV------------------------------------------- 404 (573)
Q Consensus 398 ----~-------------~i~~-------------~~------------------------------------------- 404 (573)
. .+.. ++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (556)
T 4a2p_A 240 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 319 (556)
T ss_dssp HHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0000 00
Q ss_pred ---------------------------------------------EEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEE
Q 008235 405 ---------------------------------------------NVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYI 439 (573)
Q Consensus 405 ---------------------------------------------~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF 439 (573)
........|...|.++|...+.... ..++|||
T Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~---~~k~lVF 396 (556)
T 4a2p_A 320 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP---QTRTLLF 396 (556)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCT---TCCEEEE
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCC---CceEEEE
Confidence 0000014466677777766654343 6799999
Q ss_pred ecChhhHHHHHHHHHHC----CCCeeee-------cCC-----CHHHHHHHHHhc-CCCCCeEEEEeccccCCCccCCCC
Q 008235 440 VGKDSKFQNLVSTLKCK----GYSISTG-------SNC-----IVSHIKNSVEAD-GRKRPAVSMIDKDHISTAELEEYE 502 (573)
Q Consensus 440 ~~s~~~~~~l~~~L~~~----g~~~~~~-------~~~-----~~~~~l~~F~~~-g~~~~l~~lvd~~s~rGlDip~v~ 502 (573)
|+++..++.|+..|... ++.+..+ +|| +|.++++.| ++ |..++|++ ||+++ +|||+|+|+
T Consensus 397 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F-~~~g~~~vLva-T~~~~-~GiDip~v~ 473 (556)
T 4a2p_A 397 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF-KTSKDNRLLIA-TSVAD-EGIDIVQCN 473 (556)
T ss_dssp ESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------------CCEEEE-EC------------C
T ss_pred EccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHh-cccCceEEEEE-cCchh-cCCCchhCC
Confidence 99999999999999875 3333221 233 455689999 77 98898877 67884 899999999
Q ss_pred EEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccH
Q 008235 503 VVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541 (573)
Q Consensus 503 ~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~ 541 (573)
+|||||+|.++..|+||+|| ||. +.|.+++|+++.+.
T Consensus 474 ~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 474 LVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp EEEEETCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred EEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 99999999999999999999 998 89999999998754
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.9e-43 Score=388.70 Aligned_cols=331 Identities=12% Similarity=0.103 Sum_probs=237.1
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 200 PLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 200 ~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
++.++|+|.++++.++.|+|+++++||| ||||++|++|+++.+...+. ..++++|||+||++|+.|+++.+..+
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tG-sGKT~~~~~~~~~~~~~~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTG-CGKTFVSLLICEHHLKKFPC-----GQKGKVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHHHTCCS-----SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCC-ChHHHHHHHHHHHHHHhccc-----CCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 4566999999999999999999999999 99999999999998876532 13778999999999999999999997
Q ss_pred -hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCC-CCCCccEEEEeCcccccCcchHHHHH----H
Q 008235 280 -KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI-DVSGVSLLVVDRLDSLSKGDTLSLIR----Q 353 (573)
Q Consensus 280 -~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~-~l~~l~~lViDEad~ll~~~~l~~Il----~ 353 (573)
...++++..++||.....+...+.. +++|+|+||++|.+++..+.+ .+.++++|||||||++.+...+..++ .
T Consensus 76 ~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 154 (555)
T 3tbk_A 76 FERLGYNIASISGATSDSVSVQHIIE-DNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLD 154 (555)
T ss_dssp HHTTTCCEEEECTTTGGGSCHHHHHH-HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHH
T ss_pred hccCCcEEEEEcCCCcchhhHHHHhc-CCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHH
Confidence 4458999999999987776666666 699999999999999998877 78999999999999998821233332 2
Q ss_pred hc-----CCCCcEEEEeccCCcc----HHHHHH------HHhcCCceEEEcCCC------ccccccceEEEEEE------
Q 008235 354 SI-----SGKPHTVVFNDCLTYT----SVPAVQ------NLLLGSINRLSLNQS------VASQSACIIQSVNV------ 406 (573)
Q Consensus 354 ~l-----~~~~q~l~~SAT~~~~----~~~~~~------~~l~~~~~~i~~~~~------~~~~~~~i~~~~~~------ 406 (573)
.. .+.+|+++||||++.. ...... ..+..+ .+..... ............+.
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDAS--VIATVRDNVAELEQVVYKPQKISRKVASRTSNT 232 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCS--EEECCCSCHHHHHTTCCCCCEEEEECCCCSCCH
T ss_pred hhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCe--eeeccccCHHHHHhhcCCCceEEEEecCcccCh
Confidence 21 2568999999999652 111111 112211 1111100 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 008235 407 -------------------------------------------------------------------------------- 406 (573)
Q Consensus 407 -------------------------------------------------------------------------------- 406 (573)
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 312 (555)
T 3tbk_A 233 FKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYND 312 (555)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------cCChhHHHHHHHHHHHHHhccCCCCCC
Q 008235 407 -----------------------------------------------------CASDEEKILKGIQVLDHAYGDHFHSEP 433 (573)
Q Consensus 407 -----------------------------------------------------~~~~~~k~~~l~~~L~~~~~~~~~~~~ 433 (573)
+.....|...|.++|...+.... .
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~---~ 389 (555)
T 3tbk_A 313 ALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKP---E 389 (555)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCT---T
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCC---C
Confidence 00114577777778877765554 6
Q ss_pred CcEEEEecChhhHHHHHHHHHHCC----CCeeee-------cCC-----CHHHHHHHHHhc-CCCCCeEEEEeccccCCC
Q 008235 434 LKVLYIVGKDSKFQNLVSTLKCKG----YSISTG-------SNC-----IVSHIKNSVEAD-GRKRPAVSMIDKDHISTA 496 (573)
Q Consensus 434 ~k~lIF~~s~~~~~~l~~~L~~~g----~~~~~~-------~~~-----~~~~~l~~F~~~-g~~~~l~~lvd~~s~rGl 496 (573)
.++||||+++..++.++..|...+ +.+..+ +|| +|.++++.| ++ |..++|++ ||+++ +||
T Consensus 390 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F-~~~g~~~vLva-T~~~~-~Gl 466 (555)
T 3tbk_A 390 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAF-RASGDNNILIA-TSVAD-EGI 466 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC---------------------------CCSEEEE-CCCTT-CCE
T ss_pred ceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHH-hcCCCeeEEEE-cchhh-cCC
Confidence 899999999999999999999875 344332 123 455689999 77 88898877 67884 899
Q ss_pred ccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHH
Q 008235 497 ELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQM 547 (573)
Q Consensus 497 Dip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l 547 (573)
|+|+|++|||||+|.++..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 467 Dlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 467 DIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp ETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred ccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999999999999999999 998 89999999998866544444
No 27
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=2.6e-42 Score=381.36 Aligned_cols=334 Identities=10% Similarity=0.059 Sum_probs=250.2
Q ss_pred HhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHH
Q 008235 191 RHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAA 270 (573)
Q Consensus 191 ~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~ 270 (573)
+..|+ .| ||+|..++|.++.|+ |+.++|| +|||++|.||++...+ .|..++||+||++||.
T Consensus 106 R~lG~-rP-----~~VQ~~~ip~Ll~G~--Iaem~TG-eGKTLa~~LP~~l~aL----------~g~~v~VvTpTreLA~ 166 (922)
T 1nkt_A 106 RVLDQ-RP-----FDVQVMGAAALHLGN--VAEMKTG-EGKTLTCVLPAYLNAL----------AGNGVHIVTVNDYLAK 166 (922)
T ss_dssp HHHSC-CC-----CHHHHHHHHHHHTTE--EEECCTT-SCHHHHTHHHHHHHHT----------TTSCEEEEESSHHHHH
T ss_pred HHcCC-CC-----CHHHHHHHHhHhcCC--EEEecCC-CccHHHHHHHHHHHHH----------hCCCeEEEeCCHHHHH
Confidence 34677 88 999999999999998 9999999 9999999999975543 2567999999999999
Q ss_pred HHHHHHhhh-hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcC------CCCCCCccEEEEeCcccc
Q 008235 271 KVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLK------AIDVSGVSLLVVDRLDSL 342 (573)
Q Consensus 271 Qi~~~~~~l-~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~------~~~l~~l~~lViDEad~l 342 (573)
|+.+++..+ ..+|+++++++||.+... +.+.. ++||+||||++| .|+|..+ .+.++.+.++||||||+|
T Consensus 167 Qdae~m~~l~~~lGLsv~~i~gg~~~~~--r~~~y-~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsm 243 (922)
T 1nkt_A 167 RDSEWMGRVHRFLGLQVGVILATMTPDE--RRVAY-NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSI 243 (922)
T ss_dssp HHHHHHHHHHHHTTCCEEECCTTCCHHH--HHHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHH
T ss_pred HHHHHHHHHHhhcCCeEEEEeCCCCHHH--HHHhc-CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHH
Confidence 999999998 557999999999998543 33444 689999999999 8888765 366789999999999999
Q ss_pred c-C------------------cchHHHHHHhcC---------CCCcEE-----------------EEeccCCccHHHH--
Q 008235 343 S-K------------------GDTLSLIRQSIS---------GKPHTV-----------------VFNDCLTYTSVPA-- 375 (573)
Q Consensus 343 l-~------------------~~~l~~Il~~l~---------~~~q~l-----------------~~SAT~~~~~~~~-- 375 (573)
| | ...+..|+..++ +.+|++ +||||++..+..+
T Consensus 244 LiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~ 323 (922)
T 1nkt_A 244 LIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNN 323 (922)
T ss_dssp HTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHH
T ss_pred HHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHH
Confidence 8 3 267889999997 688999 9999998643332
Q ss_pred ---HHHHhcCCceE-------EEcCCC----------------------------ccccccceEE---------------
Q 008235 376 ---VQNLLLGSINR-------LSLNQS----------------------------VASQSACIIQ--------------- 402 (573)
Q Consensus 376 ---~~~~l~~~~~~-------i~~~~~----------------------------~~~~~~~i~~--------------- 402 (573)
+..++...+.+ +.++.. ++.+...|.+
T Consensus 324 aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTG 403 (922)
T 1nkt_A 324 ALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTG 403 (922)
T ss_dssp HHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEES
T ss_pred HHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhcccc
Confidence 22233211111 111110 0011111221
Q ss_pred --------------------------------EEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHH
Q 008235 403 --------------------------------SVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLV 450 (573)
Q Consensus 403 --------------------------------~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~ 450 (573)
.++++. ...|+..|...+...... +.++||||+|+..++.|+
T Consensus 404 Ta~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t-~~~K~~al~~~i~~~~~~-----gqpvLVft~Sie~sE~Ls 477 (922)
T 1nkt_A 404 TAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKT-EEAKYIAVVDDVAERYAK-----GQPVLIGTTSVERSEYLS 477 (922)
T ss_dssp CCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESC-HHHHHHHHHHHHHHHHHT-----TCCEEEEESCHHHHHHHH
T ss_pred CchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeC-HHHHHHHHHHHHHHHHhc-----CCcEEEEECCHHHHHHHH
Confidence 134443 678998888888765432 458999999999999999
Q ss_pred HHHHHCCCCeeeecCCCHHHHHHHH-HhcCCC-CCeEEEEeccccCCCccCCC---------------------------
Q 008235 451 STLKCKGYSISTGSNCIVSHIKNSV-EADGRK-RPAVSMIDKDHISTAELEEY--------------------------- 501 (573)
Q Consensus 451 ~~L~~~g~~~~~~~~~~~~~~l~~F-~~~g~~-~~l~~lvd~~s~rGlDip~v--------------------------- 501 (573)
..|...|+++..+ ||+..+..... .+.|+. .++++ ||++ .||+||+.+
T Consensus 478 ~~L~~~Gi~~~vL-nak~~~rEa~iia~agr~G~VtIA-TnmA-gRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (922)
T 1nkt_A 478 RQFTKRRIPHNVL-NAKYHEQEATIIAVAGRRGGVTVA-TNMA-GRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEA 554 (922)
T ss_dssp HHHHHTTCCCEEE-CSSCHHHHHHHHHTTTSTTCEEEE-ETTC-STTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHH
T ss_pred HHHHHCCCCEEEe-cCChhHHHHHHHHhcCCCCeEEEe-cchh-hcCccccCCCCHHHHHHHHHhhccccccccchhhHH
Confidence 9999999999875 77654422111 123333 34444 6999 599999975
Q ss_pred -------------------------CEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHH----HHHHHHHH
Q 008235 502 -------------------------EVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHA----GQMIEILE 552 (573)
Q Consensus 502 -------------------------~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~----~~l~~~l~ 552 (573)
.|||+|++|.|...|+||+|||||.|.+|.+++|++..|.-+- ..+..++.
T Consensus 555 ~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~ 634 (922)
T 1nkt_A 555 AWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLT 634 (922)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhhhHHHHHHHH
Confidence 4999999999999999999999999999999999998775332 34555555
Q ss_pred HcC
Q 008235 553 QCG 555 (573)
Q Consensus 553 ~~~ 555 (573)
..+
T Consensus 635 ~~~ 637 (922)
T 1nkt_A 635 RLN 637 (922)
T ss_dssp HTT
T ss_pred HhC
Confidence 543
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.1e-42 Score=392.13 Aligned_cols=328 Identities=10% Similarity=0.115 Sum_probs=211.8
Q ss_pred CCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHH
Q 008235 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (573)
Q Consensus 193 ~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi 272 (573)
.|+..| +|+|.++++.++.|+|+|+++||| ||||++|++|++..+...+. ..++++|||+||++|+.|+
T Consensus 244 ~g~~~l-----~~~Q~~~i~~~l~~~~~ll~~~TG-sGKTl~~~~~i~~~l~~~~~-----~~~~~~Lvl~Pt~~L~~Q~ 312 (797)
T 4a2q_A 244 YETKKA-----RSYQIELAQPAINGKNALICAPTG-SGKTFVSILICEHHFQNMPA-----GRKAKVVFLATKVPVYEQQ 312 (797)
T ss_dssp ----CC-----CHHHHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHHHTCCS-----SCCCCEEEECSSHHHHHHH
T ss_pred cCCCCC-----CHHHHHHHHHHHhCCCEEEEeCCC-ChHHHHHHHHHHHHHHhccc-----cCCCeEEEEeCCHHHHHHH
Confidence 577787 999999999999999999999999 99999999999998876521 1377899999999999999
Q ss_pred HHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCC-CCCCccEEEEeCcccccCcchHHH
Q 008235 273 RSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI-DVSGVSLLVVDRLDSLSKGDTLSL 350 (573)
Q Consensus 273 ~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~-~l~~l~~lViDEad~ll~~~~l~~ 350 (573)
.+.++.+. ..+++++.++||.....+...+.. +++|+|+||++|.+++..+.+ .+.++++|||||||++.....+..
T Consensus 313 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~ 391 (797)
T 4a2q_A 313 KNVFKHHFERQGYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNV 391 (797)
T ss_dssp HHHHHHHHGGGTCCEEEECCC-----CHHHHHH-TCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHH
T ss_pred HHHHHHhcccCCceEEEEeCCcchhhhHHHhhC-CCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHH
Confidence 99999974 459999999999987776666766 799999999999999998777 789999999999999998222333
Q ss_pred HHHhc--------CCCCcEEEEeccCCcc-----------HHHHH------------------HHHhcCCceEE-EcCCC
Q 008235 351 IRQSI--------SGKPHTVVFNDCLTYT-----------SVPAV------------------QNLLLGSINRL-SLNQS 392 (573)
Q Consensus 351 Il~~l--------~~~~q~l~~SAT~~~~-----------~~~~~------------------~~~l~~~~~~i-~~~~~ 392 (573)
++..+ .+.+|++++|||++.. +..+. ..++..|...+ .+...
T Consensus 392 i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~ 471 (797)
T 4a2q_A 392 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 471 (797)
T ss_dssp HHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCC
T ss_pred HHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCC
Confidence 33221 4668999999998531 11111 11222221111 11100
Q ss_pred ccccc---------------c------ceEEE--EE--------------------------------------------
Q 008235 393 VASQS---------------A------CIIQS--VN-------------------------------------------- 405 (573)
Q Consensus 393 ~~~~~---------------~------~i~~~--~~-------------------------------------------- 405 (573)
..... . .+... ..
T Consensus 472 ~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 551 (797)
T 4a2q_A 472 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 551 (797)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 00000 0 00000 00
Q ss_pred -------------------------------------------------------EcCChhHHHHHHHHHHHHHhccCCC
Q 008235 406 -------------------------------------------------------VCASDEEKILKGIQVLDHAYGDHFH 430 (573)
Q Consensus 406 -------------------------------------------------------~~~~~~~k~~~l~~~L~~~~~~~~~ 430 (573)
.......|+..|..+|...+....
T Consensus 552 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~- 630 (797)
T 4a2q_A 552 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP- 630 (797)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCC-
Confidence 000013466667777776554444
Q ss_pred CCCCcEEEEecChhhHHHHHHHHHHC------------CCCeeeecCC-----CHHHHHHHHHhc-CCCCCeEEEEeccc
Q 008235 431 SEPLKVLYIVGKDSKFQNLVSTLKCK------------GYSISTGSNC-----IVSHIKNSVEAD-GRKRPAVSMIDKDH 492 (573)
Q Consensus 431 ~~~~k~lIF~~s~~~~~~l~~~L~~~------------g~~~~~~~~~-----~~~~~l~~F~~~-g~~~~l~~lvd~~s 492 (573)
+.++||||+++..++.|+..|... |..... +|| +|.+++++| ++ |..++|++ ||+++
T Consensus 631 --~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~-~hg~~~~~eR~~~l~~F-~~~g~~~vLVa-T~~~~ 705 (797)
T 4a2q_A 631 --QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRD-QTTGMTLPSQKGVLDAF-KTSKDNRLLIA-TSVAD 705 (797)
T ss_dssp --SCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC------------------------------CCSEEEE-ECC--
T ss_pred --CCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcc-cCCCCCHHHHHHHHHHh-hccCCceEEEE-cCchh
Confidence 689999999999999999999874 232222 243 455689999 76 99998877 67884
Q ss_pred cCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccH
Q 008235 493 ISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541 (573)
Q Consensus 493 ~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~ 541 (573)
+|||+|+|++||+||+|.|+..|+||+|| ||. +.|.+++|+++.+.
T Consensus 706 -~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 706 -EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp ------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred -cCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 89999999999999999999999999999 998 89999999998754
No 29
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3.1e-41 Score=381.91 Aligned_cols=323 Identities=14% Similarity=0.100 Sum_probs=246.6
Q ss_pred HHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCc
Q 008235 178 FLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGP 257 (573)
Q Consensus 178 ~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~ 257 (573)
++.|+.+.+.+.+...||..+ +|+|.++++.+++|+|++++|||| ||||++|.+|++..+.. +.
T Consensus 6 l~~~l~~~~~~~l~~~g~~~l-----~~~Q~~~i~~i~~~~~~lv~apTG-sGKT~~~~l~il~~~~~----------~~ 69 (702)
T 2p6r_A 6 LAESISSYAVGILKEEGIEEL-----FPPQAEAVEKVFSGKNLLLAMPTA-AGKTLLAEMAMVREAIK----------GG 69 (702)
T ss_dssp HHHHHHHHHHHHHHCC---CC-----CCCCHHHHHHHTTCSCEEEECSSH-HHHHHHHHHHHHHHHHT----------TC
T ss_pred hhhccCHHHHHHHHhCCCCCC-----CHHHHHHHHHHhCCCcEEEEcCCc-cHHHHHHHHHHHHHHHh----------CC
Confidence 444568888888888999998 999999999999999999999999 99999999999988752 56
Q ss_pred EEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEe
Q 008235 258 FLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVD 337 (573)
Q Consensus 258 ~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViD 337 (573)
++||++|||+||.|+++.++.+...|+++..++|+...... .+ . +++|+|+|||+|..++.+....++++++||||
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~--~~-~-~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiD 145 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE--HL-G-DCDIIVTTSEKADSLIRNRASWIKAVSCLVVD 145 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS--CS-T-TCSEEEEEHHHHHHHHHTTCSGGGGCCEEEET
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh--hc-c-CCCEEEECHHHHHHHHHcChhHHhhcCEEEEe
Confidence 89999999999999999998787779999999998765432 12 2 68999999999999998877778999999999
Q ss_pred CcccccC---cchHHHHHHhc---CCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEE------
Q 008235 338 RLDSLSK---GDTLSLIRQSI---SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN------ 405 (573)
Q Consensus 338 Ead~ll~---~~~l~~Il~~l---~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~------ 405 (573)
|||.+.+ ...+..++..+ .++.|++++|||+++ ..+++. |+..+. +...... ..+...+.
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~--~~~~~r~----~~l~~~~~~~~~~~ 217 (702)
T 2p6r_A 146 EIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY--YVSDWRP----VPLVEGVLCEGTLE 217 (702)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE--EECCCCS----SCEEEEEECSSEEE
T ss_pred eeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc--ccCCCCC----ccceEEEeeCCeee
Confidence 9999887 45566665555 678999999999996 555554 454432 2222110 01111111
Q ss_pred EcCCh------hHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC-----------------------
Q 008235 406 VCASD------EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK----------------------- 456 (573)
Q Consensus 406 ~~~~~------~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~----------------------- 456 (573)
..+.. ......+.+.+ .. .+++||||+++..++.++..|...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~ 288 (702)
T 2p6r_A 218 LFDGAFSTSRRVKFEELVEECV----AE-----NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMS 288 (702)
T ss_dssp EEETTEEEEEECCHHHHHHHHH----HT-----TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHH
T ss_pred ccCcchhhhhhhhHHHHHHHHH----hc-----CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhcccccc
Confidence 11100 01333333333 22 579999999999999999988753
Q ss_pred -------CCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEe----CC---CCCCHHHHH
Q 008235 457 -------GYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIV----PD---FIISMKNYV 517 (573)
Q Consensus 457 -------g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~----~d---~P~s~~~Yi 517 (573)
+..+.. +||. +..+++.| ++|..+++++ |+++ .+|||+|++++||+ || .|.+..+|+
T Consensus 289 ~~l~~~~~~~v~~-~h~~l~~~~R~~v~~~f-~~g~~~vlva-T~~l-~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~ 364 (702)
T 2p6r_A 289 RKLAECVRKGAAF-HHAGLLNGQRRVVEDAF-RRGNIKVVVA-TPTL-AAGVNLPARRVIVRSLYRFDGYSKRIKVSEYK 364 (702)
T ss_dssp HHHHHHHHTTCCE-ECTTSCHHHHHHHHHHH-HTTSCCEEEE-CSTT-TSSSCCCBSEEEECCSEEESSSEEECCHHHHH
T ss_pred HHHHHHHhcCeEE-ecCCCCHHHHHHHHHHH-HCCCCeEEEE-CcHH-hccCCCCceEEEEcCceeeCCCCCcCCHHHHH
Confidence 122333 5764 45589999 9999999887 5677 47999999999999 76 799999999
Q ss_pred HHHhccccCC--CcceEEEEeccccH
Q 008235 518 EILTSMARHT--VSGILHSFFTKDDA 541 (573)
Q Consensus 518 qR~GR~gR~g--~~G~~i~~~~~~d~ 541 (573)
||+||+||.| ..|.|+.++++.+.
T Consensus 365 Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 365 QMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp HHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred HHhhhcCCCCCCCCceEEEEecCccH
Confidence 9999999998 58999999998774
No 30
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.4e-41 Score=385.92 Aligned_cols=325 Identities=14% Similarity=0.122 Sum_probs=250.9
Q ss_pred ccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHH-HhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhch
Q 008235 169 CEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKC-YSSAKDILETSGSSSTIVQIAWIVATAADSIARK 247 (573)
Q Consensus 169 ~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~-il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~ 247 (573)
|++.++|+.+ .+.+...||..| +|+|.++++. +..|++++++|||| ||||++|.+|+++.+...
T Consensus 3 f~~l~l~~~~--------~~~l~~~g~~~l-----~~~Q~~~i~~~~~~~~~~lv~apTG-sGKT~~~~l~il~~~~~~- 67 (720)
T 2zj8_A 3 VDELRVDERI--------KSTLKERGIESF-----YPPQAEALKSGILEGKNALISIPTA-SGKTLIAEIAMVHRILTQ- 67 (720)
T ss_dssp GGGCCSCHHH--------HHHHHHTTCCBC-----CHHHHHHHTTTGGGTCEEEEECCGG-GCHHHHHHHHHHHHHHHH-
T ss_pred HhhcCCCHHH--------HHHHHHCCCCCC-----CHHHHHHHHHHhcCCCcEEEEcCCc-cHHHHHHHHHHHHHHHhC-
Confidence 6666777666 344556899998 9999999998 88999999999999 999999999999888743
Q ss_pred hccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCC
Q 008235 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327 (573)
Q Consensus 248 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~ 327 (573)
+.++||++||++||.|+++.++.+...|++++.++|+...... .+. +++|+|+||++|..++......
T Consensus 68 --------~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~--~~~--~~~Iiv~Tpe~l~~~~~~~~~~ 135 (720)
T 2zj8_A 68 --------GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE--WLG--KYDIIIATAEKFDSLLRHGSSW 135 (720)
T ss_dssp --------CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG--GGG--GCSEEEECHHHHHHHHHHTCTT
T ss_pred --------CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc--ccC--CCCEEEECHHHHHHHHHcChhh
Confidence 5689999999999999999998887779999999998765432 222 5899999999999999887777
Q ss_pred CCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEE
Q 008235 328 VSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSV 404 (573)
Q Consensus 328 l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~ 404 (573)
++++++|||||||++.+ ...+..++..++.+.|++++|||+++ ..+++. |+..+. +..... . ..+...+
T Consensus 136 l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~~--~~~~~r---p-~~l~~~~ 207 (720)
T 2zj8_A 136 IKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAE-WLNAEL--IVSDWR---P-VKLRRGV 207 (720)
T ss_dssp GGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEEE--EECCCC---S-SEEEEEE
T ss_pred hhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCcc--cCCCCC---C-CcceEEE
Confidence 89999999999999986 67788888888778999999999987 455554 444321 111110 0 1112111
Q ss_pred ------EEcCC----hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCC-----------------
Q 008235 405 ------NVCAS----DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKG----------------- 457 (573)
Q Consensus 405 ------~~~~~----~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g----------------- 457 (573)
..... ...+...+.+.+ .. ++++||||+++..|+.++..|....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~ 278 (720)
T 2zj8_A 208 FYQGFVTWEDGSIDRFSSWEELVYDAI----RK-----KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELAD 278 (720)
T ss_dssp EETTEEEETTSCEEECSSTTHHHHHHH----HT-----TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred EeCCeeeccccchhhhhHHHHHHHHHH----hC-----CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Confidence 11110 122333333333 22 5799999999999999999987531
Q ss_pred -C---------------CeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEe----CC----
Q 008235 458 -Y---------------SISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIV----PD---- 508 (573)
Q Consensus 458 -~---------------~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~----~d---- 508 (573)
+ .+. .+||. +..+++.| ++|..+++++ |++. .+|+|+|++++||+ ||
T Consensus 279 ~i~~~~~~~~l~~~~~~~v~-~~h~~l~~~~R~~v~~~f-~~g~~~vlva-T~~l-~~Gvdip~~~~VI~~~~~yd~~g~ 354 (720)
T 2zj8_A 279 SLEENPTNEKLAKAIRGGVA-FHHAGLGRDERVLVEENF-RKGIIKAVVA-TPTL-SAGINTPAFRVIIRDIWRYSDFGM 354 (720)
T ss_dssp TSCSCHHHHHHHHHHTTTEE-EECTTSCHHHHHHHHHHH-HTTSSCEEEE-CSTT-GGGCCCCBSEEEECCSEECCSSSC
T ss_pred HHhcccchHHHHHHHhcCee-eecCCCCHHHHHHHHHHH-HCCCCeEEEE-CcHh-hccCCCCceEEEEcCCeeecCCCC
Confidence 1 244 35764 45589999 8999999887 5666 47999999999999 77
Q ss_pred CCCCHHHHHHHHhccccCC--CcceEEEEeccccH
Q 008235 509 FIISMKNYVEILTSMARHT--VSGILHSFFTKDDA 541 (573)
Q Consensus 509 ~P~s~~~YiqR~GR~gR~g--~~G~~i~~~~~~d~ 541 (573)
.|.+..+|+||+||+||.| ..|.|++|+++.+.
T Consensus 355 ~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 389 (720)
T 2zj8_A 355 ERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDP 389 (720)
T ss_dssp EECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCH
T ss_pred ccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccH
Confidence 6999999999999999998 57999999998873
No 31
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.4e-40 Score=374.33 Aligned_cols=325 Identities=13% Similarity=0.101 Sum_probs=246.3
Q ss_pred CCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHH-HhcCCcEEEEeCCCchhHHHHHHHHHHHHHHh
Q 008235 167 QACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKC-YSSAKDILETSGSSSTIVQIAWIVATAADSIA 245 (573)
Q Consensus 167 ~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~-il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~ 245 (573)
..|++.++|+.+ .+.+...||..+ +|+|.++++. +..|++++++|||| ||||++|.+|+++.+..
T Consensus 8 ~~~~~l~l~~~~--------~~~l~~~g~~~l-----~~~Q~~~i~~~~~~~~~~lv~apTG-sGKT~~~~l~il~~~~~ 73 (715)
T 2va8_A 8 MPIEDLKLPSNV--------IEIIKKRGIKKL-----NPPQTEAVKKGLLEGNRLLLTSPTG-SGKTLIAEMGIISFLLK 73 (715)
T ss_dssp CBGGGSSSCHHH--------HHHHHTTSCCBC-----CHHHHHHHHTTTTTTCCEEEECCTT-SCHHHHHHHHHHHHHHH
T ss_pred CcHHHcCCCHHH--------HHHHHhCCCCCC-----CHHHHHHHHHHhcCCCcEEEEcCCC-CcHHHHHHHHHHHHHHH
Confidence 346777777666 344566899998 9999999999 78899999999999 99999999999988764
Q ss_pred chhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC
Q 008235 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA 325 (573)
Q Consensus 246 ~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~ 325 (573)
. +.++||++|+|+||.|+++.++.+...|+++..++|+...... .+. +++|+|+|||+|..++....
T Consensus 74 ~---------~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~--~~~--~~~Iiv~Tpe~l~~~~~~~~ 140 (715)
T 2va8_A 74 N---------GGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA--WLK--NYDIIITTYEKLDSLWRHRP 140 (715)
T ss_dssp S---------CSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG--GGG--GCSEEEECHHHHHHHHHHCC
T ss_pred C---------CCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh--hcC--CCCEEEEcHHHHHHHHhCCh
Confidence 2 5699999999999999999998777779999999998765442 232 58999999999999998877
Q ss_pred CCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEE
Q 008235 326 IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQ 402 (573)
Q Consensus 326 ~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~ 402 (573)
..++++++|||||||.+.+ ...++.++..++ +.|++++|||+++ ...++. |+..+. +..... . ..+..
T Consensus 141 ~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~~--~~~~~r---~-~~l~~ 211 (715)
T 2va8_A 141 EWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAEP--VATNWR---P-VPLIE 211 (715)
T ss_dssp GGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCEE--EECCCC---S-SCEEE
T ss_pred hHhhccCEEEEechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCCc--cCCCCC---C-CCceE
Confidence 7789999999999999886 566777777776 7999999999986 455554 444332 211110 0 01111
Q ss_pred ------------EEEEcCC-------hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCC-----
Q 008235 403 ------------SVNVCAS-------DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY----- 458 (573)
Q Consensus 403 ------------~~~~~~~-------~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~----- 458 (573)
.+...+. ...... .+...+.. ++++||||+++..++.++..|.....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~ 282 (715)
T 2va8_A 212 GVIYPERKKKEYNVIFKDNTTKKVHGDDAIIA----YTLDSLSK-----NGQVLVFRNSRKMAESTALKIANYMNFVSLD 282 (715)
T ss_dssp EEEEECSSTTEEEEEETTSCEEEEESSSHHHH----HHHHHHTT-----TCCEEEECSSHHHHHHHHHHHHHTTTSSCCC
T ss_pred EEEecCCcccceeeecCcchhhhcccchHHHH----HHHHHHhc-----CCCEEEEECCHHHHHHHHHHHHHHHhhccCC
Confidence 1111110 133333 33333332 57999999999999999999986522
Q ss_pred -------------------------------CeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCC
Q 008235 459 -------------------------------SISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYE 502 (573)
Q Consensus 459 -------------------------------~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~ 502 (573)
.+. .+||. +..+++.| ++|..+++++ |+++ .+|||+|+++
T Consensus 283 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~-~~h~~l~~~~r~~v~~~f-~~g~~~vlva-T~~l-~~Gidip~~~ 358 (715)
T 2va8_A 283 ENALSEILKQLDDIEEGGSDEKELLKSLISKGVA-YHHAGLSKALRDLIEEGF-RQRKIKVIVA-TPTL-AAGVNLPART 358 (715)
T ss_dssp HHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEE-EECTTSCHHHHHHHHHHH-HTTCSCEEEE-CGGG-GGSSCCCBSE
T ss_pred hHHHHHHHHHHHHhhhccccccHHHHHHHhcCEE-EECCCCCHHHHHHHHHHH-HcCCCeEEEE-ChHH-hcccCCCceE
Confidence 244 36774 45589999 9999999888 5677 4799999999
Q ss_pred EEEe----CC-------CCCCHHHHHHHHhccccCC--CcceEEEEecccc
Q 008235 503 VVIV----PD-------FIISMKNYVEILTSMARHT--VSGILHSFFTKDD 540 (573)
Q Consensus 503 ~VI~----~d-------~P~s~~~YiqR~GR~gR~g--~~G~~i~~~~~~d 540 (573)
+||+ || .|.+..+|+||+||+||.| ..|.|+.|+++.+
T Consensus 359 ~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 359 VIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp EEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred EEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 9999 99 8999999999999999998 4799999998765
No 32
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-40 Score=382.94 Aligned_cols=312 Identities=11% Similarity=0.046 Sum_probs=239.9
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcC
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF 282 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~ 282 (573)
++|+|.++++.+.+|++++++|||| ||||++|.+|++..+. .+.++||++||++|+.|+++.+..+..
T Consensus 87 L~~~Q~eai~~l~~g~~vLV~apTG-SGKTlva~lai~~~l~----------~g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 87 LDPFQDTAISCIDRGESVLVSAHTS-AGKTVVAEYAIAQSLK----------NKQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp CCHHHHHHHHHHHHTCEEEEECCTT-SCHHHHHHHHHHHHHH----------TTCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCC-CChHHHHHHHHHHHhc----------cCCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 4999999999999999999999999 9999999999987763 367999999999999999999988632
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcCCCC
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKP 359 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~ 359 (573)
.++.++|+..... +++|+|+||++|.+++.++...+.++++|||||||+|.+ ...+..++..++...
T Consensus 155 --~vglltGd~~~~~--------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~ 224 (1010)
T 2xgj_A 155 --DVGLMTGDITINP--------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 224 (1010)
T ss_dssp --CEEEECSSCEECT--------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTC
T ss_pred --CEEEEeCCCccCC--------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCC
Confidence 6777888876432 589999999999999998888899999999999999988 566788888999999
Q ss_pred cEEEEeccCCccHH--HHHHHHhcCCceEEEcCCCccccccceEEEEEEcC---------Chh----H------------
Q 008235 360 HTVVFNDCLTYTSV--PAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCA---------SDE----E------------ 412 (573)
Q Consensus 360 q~l~~SAT~~~~~~--~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~---------~~~----~------------ 412 (573)
|++++|||+++... .++......+...+..... ...+.++++... ... .
T Consensus 225 ~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (1010)
T 2xgj_A 225 RYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 300 (1010)
T ss_dssp EEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC----SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--
T ss_pred eEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC----cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh
Confidence 99999999987422 2333334556423322211 123444443311 000 0
Q ss_pred ------------------H--------HHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCe------
Q 008235 413 ------------------K--------ILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI------ 460 (573)
Q Consensus 413 ------------------k--------~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~------ 460 (573)
| ...+..++..+... . ..++||||+|+..|+.++..|...++..
T Consensus 301 ~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~---~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~ 376 (1010)
T 2xgj_A 301 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-K---YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEA 376 (1010)
T ss_dssp ----------------------------CHHHHHHHHHHHH-T---CCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHH
T ss_pred hcccccccccccccccccccccccccchHHHHHHHHHHHhc-C---CCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHH
Confidence 1 12233344333322 1 3599999999999999999997765531
Q ss_pred --------------------------------eeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCE
Q 008235 461 --------------------------------STGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEV 503 (573)
Q Consensus 461 --------------------------------~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~ 503 (573)
...+||. +..+++.| ++|..++|++ |++. ++|||+|++++
T Consensus 377 i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F-~~G~ikVLVA-T~~l-a~GIDiP~~~v 453 (1010)
T 2xgj_A 377 LTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILF-QEGFLKVLFA-TETF-SIGLNMPAKTV 453 (1010)
T ss_dssp HHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHH-HTTCCSEEEE-EGGG-GGSTTCCBSEE
T ss_pred HHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHH-hcCCCcEEEE-ehHh-hccCCCCCceE
Confidence 2346775 44589999 9999999888 6677 48999999999
Q ss_pred EEe----CCC----CCCHHHHHHHHhccccCCC--cceEEEEeccc-cHHHHHHH
Q 008235 504 VIV----PDF----IISMKNYVEILTSMARHTV--SGILHSFFTKD-DAAHAGQM 547 (573)
Q Consensus 504 VI~----~d~----P~s~~~YiqR~GR~gR~g~--~G~~i~~~~~~-d~~~~~~l 547 (573)
||+ ||. |.++.+|+||+||+||.|. .|.|++|+++. +...+..+
T Consensus 454 VI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 454 VFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp EESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred EEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 999 999 8999999999999999996 59999999875 55444444
No 33
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.3e-40 Score=352.25 Aligned_cols=319 Identities=13% Similarity=0.069 Sum_probs=242.6
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh
Q 008235 201 LFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~ 280 (573)
+.++|+|.++++.++.+ ++++++||| +|||++++++++..+.. .+.++|||+||++|+.|+.+.+..+.
T Consensus 8 ~~l~~~Q~~~i~~~~~~-~~ll~~~tG-~GKT~~~~~~~~~~~~~---------~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-NCLIVLPTG-LGKTLIAMMIAEYRLTK---------YGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-CEEEECCTT-SCHHHHHHHHHHHHHHH---------SCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CCccHHHHHHHHHHhhC-CEEEEcCCC-CCHHHHHHHHHHHHHhc---------CCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 34599999999999999 999999999 99999999999987761 36789999999999999999999874
Q ss_pred c-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcC
Q 008235 281 A-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSIS 356 (573)
Q Consensus 281 ~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~ 356 (573)
. .+.++..++|+........... +++|+|+||++|...+..+.+.+.++++|||||||++.+ ...+...+....
T Consensus 77 ~~~~~~v~~~~g~~~~~~~~~~~~--~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~ 154 (494)
T 1wp9_A 77 NLPPEKIVALTGEKSPEERSKAWA--RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA 154 (494)
T ss_dssp CSCGGGEEEECSCSCHHHHHHHHH--HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC
T ss_pred CcchhheEEeeCCcchhhhhhhcc--CCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC
Confidence 3 3558889999988765443333 589999999999999988888899999999999999986 444455555556
Q ss_pred CCCcEEEEeccCCccHHH---HHHHHhcCCceEEEcCCCc-c---ccccceEEEEEE-----------------------
Q 008235 357 GKPHTVVFNDCLTYTSVP---AVQNLLLGSINRLSLNQSV-A---SQSACIIQSVNV----------------------- 406 (573)
Q Consensus 357 ~~~q~l~~SAT~~~~~~~---~~~~~l~~~~~~i~~~~~~-~---~~~~~i~~~~~~----------------------- 406 (573)
+..+++++|||+...... +...+...+. .+...... . .....+......
T Consensus 155 ~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (494)
T 1wp9_A 155 KNPLVIGLTASPGSTPEKIMEVINNLGIEHI-EYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPL 233 (494)
T ss_dssp SSCCEEEEESCSCSSHHHHHHHHHHTTCCEE-EECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCCCCcHHHHHHHHhcChhee-eccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999855333 3322221111 01000000 0 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 008235 407 -------------------------------------------------------------------------------- 406 (573)
Q Consensus 407 -------------------------------------------------------------------------------- 406 (573)
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (494)
T 1wp9_A 234 AETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGST 313 (494)
T ss_dssp HHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccc
Confidence
Q ss_pred ------------------------cCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeee
Q 008235 407 ------------------------CASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIST 462 (573)
Q Consensus 407 ------------------------~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~ 462 (573)
+.....|...|.++|..++.... +.++||||+++..++.++..|...|+.+..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~---~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~ 390 (494)
T 1wp9_A 314 KASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQ---NSKIIVFTNYRETAKKIVNELVKDGIKAKR 390 (494)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCT---TCCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCC---CCeEEEEEccHHHHHHHHHHHHHcCCCcEE
Confidence 00234466777777777654333 679999999999999999999999999886
Q ss_pred ecCC--------C-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCc
Q 008235 463 GSNC--------I-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVS 529 (573)
Q Consensus 463 ~~~~--------~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~ 529 (573)
+ || + +.++++.| ++|...+|++ +++.+ +|||+|++++||+||+|.++..|+||+||+||.|.
T Consensus 391 ~-~g~~~~~~~~~~~~~~r~~~~~~F-~~~~~~vLv~-T~~~~-~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~- 465 (494)
T 1wp9_A 391 F-VGQASKENDRGLSQREQKLILDEF-ARGEFNVLVA-TSVGE-EGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP- 465 (494)
T ss_dssp E-CCSSCC-------CCHHHHHHHHH-HHTSCSEEEE-CGGGG-GGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-
T ss_pred E-eccccccccccCCHHHHHHHHHHH-hcCCceEEEE-CCccc-cCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-
Confidence 5 55 3 45689999 8888888766 56663 79999999999999999999999999999999998
Q ss_pred ceEEEEeccccH
Q 008235 530 GILHSFFTKDDA 541 (573)
Q Consensus 530 G~~i~~~~~~d~ 541 (573)
|.++.|+++.+.
T Consensus 466 g~~~~l~~~~t~ 477 (494)
T 1wp9_A 466 GRVIILMAKGTR 477 (494)
T ss_dssp SEEEEEEETTSH
T ss_pred ceEEEEEecCCH
Confidence 999999998754
No 34
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=9.4e-41 Score=378.20 Aligned_cols=321 Identities=12% Similarity=0.096 Sum_probs=217.0
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHH-HHHHhhh
Q 008235 201 LFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV-RSVCKPL 279 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi-~~~~~~l 279 (573)
+.++|+|.++++.++.|+|+|+++||| +|||++|++|++..+....... .+.++|||+||++|+.|+ .+.++.+
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TG-sGKTl~~~~~i~~~l~~~~~~~----~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTG-CGKTRVAVYIAKDHLDKKKKAS----EPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTT-SCHHHHHHHHHHHHHHHHHHHT----CCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCC-CcHHHHHHHHHHHHHHhccccC----CCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 456999999999999999999999999 9999999999999887654211 347899999999999999 9999998
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHH------HcCCCCCCCccEEEEeCcccccC---cch-HH
Q 008235 280 KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLV------SLKAIDVSGVSLLVVDRLDSLSK---GDT-LS 349 (573)
Q Consensus 280 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l------~~~~~~l~~l~~lViDEad~ll~---~~~-l~ 349 (573)
...++++..++|+.....+...+.. +++|+|+||++|.+++ ....+.+.++++|||||||++.. ... +.
T Consensus 81 ~~~~~~v~~~~g~~~~~~~~~~~~~-~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~ 159 (699)
T 4gl2_A 81 LKKWYRVIGLSGDTQLKISFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 159 (699)
T ss_dssp HTTTSCEEEEC----CCCCHHHHHH-SCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHH
T ss_pred cCcCceEEEEeCCcchhhHHHhhhc-CCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHH
Confidence 6556999999999877665555555 7999999999999988 44557889999999999999876 222 22
Q ss_pred HHHHh----cC---------CCCcEEEEeccCCcc-----------HHHHHHHHhcCCceEEEcCCC---ccccccceEE
Q 008235 350 LIRQS----IS---------GKPHTVVFNDCLTYT-----------SVPAVQNLLLGSINRLSLNQS---VASQSACIIQ 402 (573)
Q Consensus 350 ~Il~~----l~---------~~~q~l~~SAT~~~~-----------~~~~~~~~l~~~~~~i~~~~~---~~~~~~~i~~ 402 (573)
.++.. .. +.+|++++|||++.. +..+...+....+........ .....+. .
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~--~ 237 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPC--K 237 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCE--E
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCc--e
Confidence 22221 11 678999999999873 222222211101100000000 0000000 0
Q ss_pred EEEEcCC-------------------------------------------------------------------------
Q 008235 403 SVNVCAS------------------------------------------------------------------------- 409 (573)
Q Consensus 403 ~~~~~~~------------------------------------------------------------------------- 409 (573)
.+..+..
T Consensus 238 ~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (699)
T 4gl2_A 238 KFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTI 317 (699)
T ss_dssp EEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1111100
Q ss_pred -------------------------------------------------------------hhHHHHHHHHHHHHHhccC
Q 008235 410 -------------------------------------------------------------DEEKILKGIQVLDHAYGDH 428 (573)
Q Consensus 410 -------------------------------------------------------------~~~k~~~l~~~L~~~~~~~ 428 (573)
...|+..|.++|...+...
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~ 397 (699)
T 4gl2_A 318 RMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRT 397 (699)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 0112222333444333221
Q ss_pred CCCCCCcEEEEecChhhHHHHHHHHHHC------CCCeeeecCCC-------------HHHHHHHHHhcCCCCCeEEEEe
Q 008235 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCK------GYSISTGSNCI-------------VSHIKNSVEADGRKRPAVSMID 489 (573)
Q Consensus 429 ~~~~~~k~lIF~~s~~~~~~l~~~L~~~------g~~~~~~~~~~-------------~~~~l~~F~~~g~~~~l~~lvd 489 (573)
. +..++||||+++..++.|+..|... |+.+..+ ||. |.++++.| ++|...+|++ |+
T Consensus 398 ~--~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~l-hg~~~~~~~~~~~~~eR~~~~~~F-~~g~~~VLVa-T~ 472 (699)
T 4gl2_A 398 E--ESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHL-IGAGHSSEFKPMTQNEQKEVISKF-RTGKINLLIA-TT 472 (699)
T ss_dssp S--SCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEEC-CCSCCCTTCCCCCHHHHHHHHHHH-CC---CCSEE-EC
T ss_pred C--CCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEE-ECCCCccCCCCCCHHHHHHHHHHH-hcCCCcEEEE-cc
Confidence 1 1479999999999999999999987 8888864 554 34589999 9999999988 67
Q ss_pred ccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEecc
Q 008235 490 KDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTK 538 (573)
Q Consensus 490 ~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~ 538 (573)
+++ +|||+|+|++|||||+|.|+..|+||+||+||.| .+++|+.+
T Consensus 473 ~~~-~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 473 VAE-EGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp SCC-TTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred ccc-cCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 884 8999999999999999999999999999976654 45555544
No 35
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.3e-40 Score=386.22 Aligned_cols=329 Identities=10% Similarity=0.101 Sum_probs=211.5
Q ss_pred CCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHH
Q 008235 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (573)
Q Consensus 193 ~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi 272 (573)
.|+..| +|+|.++++.++.|+|+++++||| ||||++|++|++..+...+. ..+.++|||+||++|+.|+
T Consensus 244 ~~~~~~-----r~~Q~~ai~~il~g~~~ll~a~TG-sGKTl~~~~~i~~~l~~~~~-----~~~~~vLvl~Pt~~L~~Q~ 312 (936)
T 4a2w_A 244 YETKKA-----RSYQIELAQPAINGKNALICAPTG-SGKTFVSILICEHHFQNMPA-----GRKAKVVFLATKVPVYEQQ 312 (936)
T ss_dssp ----CC-----CHHHHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHTTTTTCCS-----SCCCCEEEECSSHHHHHHH
T ss_pred cCCCCC-----CHHHHHHHHHHHcCCCEEEEeCCC-chHHHHHHHHHHHHHHhccc-----cCCCeEEEEeCCHHHHHHH
Confidence 467777 999999999999999999999999 99999999999987765421 1367899999999999999
Q ss_pred HHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCC-CCCCccEEEEeCcccccCcchHHH
Q 008235 273 RSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI-DVSGVSLLVVDRLDSLSKGDTLSL 350 (573)
Q Consensus 273 ~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~-~l~~l~~lViDEad~ll~~~~l~~ 350 (573)
++.++.+. ..+++++.++||.....+...+.. +++|+|+||++|.+++..+.+ .+.++++|||||||++.....+..
T Consensus 313 ~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~-~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~ 391 (936)
T 4a2w_A 313 KNVFKHHFERQGYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNV 391 (936)
T ss_dssp HHHHHHHHHTTTCCEEEECCC-----CCHHHHH-HCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHH
T ss_pred HHHHHHHhcccCceEEEEECCcchhhHHHHhcc-CCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHH
Confidence 99999974 458999999999877666556655 689999999999999998776 789999999999999988222333
Q ss_pred HHHhc--------CCCCcEEEEeccCCcc-----------HHHHH------------------HHHhcCCceEE-EcCCC
Q 008235 351 IRQSI--------SGKPHTVVFNDCLTYT-----------SVPAV------------------QNLLLGSINRL-SLNQS 392 (573)
Q Consensus 351 Il~~l--------~~~~q~l~~SAT~~~~-----------~~~~~------------------~~~l~~~~~~i-~~~~~ 392 (573)
++..+ .+.+|+++||||++.. +..+. ..++..|...+ .+...
T Consensus 392 i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~ 471 (936)
T 4a2w_A 392 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 471 (936)
T ss_dssp HHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCC
T ss_pred HHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccc
Confidence 33221 4568999999998531 11111 11222221111 11100
Q ss_pred ccccc---------------------cceEEE--EE--------------------------------------------
Q 008235 393 VASQS---------------------ACIIQS--VN-------------------------------------------- 405 (573)
Q Consensus 393 ~~~~~---------------------~~i~~~--~~-------------------------------------------- 405 (573)
..... ..+.+. ..
T Consensus 472 ~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 551 (936)
T 4a2w_A 472 IHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 551 (936)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 00000 000000 00
Q ss_pred -------------------------------------------------------EcCChhHHHHHHHHHHHHHhccCCC
Q 008235 406 -------------------------------------------------------VCASDEEKILKGIQVLDHAYGDHFH 430 (573)
Q Consensus 406 -------------------------------------------------------~~~~~~~k~~~l~~~L~~~~~~~~~ 430 (573)
.......|+..|.++|...+....
T Consensus 552 ~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~- 630 (936)
T 4a2w_A 552 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP- 630 (936)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCT-
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCC-
Confidence 000013355556666665544333
Q ss_pred CCCCcEEEEecChhhHHHHHHHHHHC----CCCeeee-------cCC-----CHHHHHHHHHhc-CCCCCeEEEEecccc
Q 008235 431 SEPLKVLYIVGKDSKFQNLVSTLKCK----GYSISTG-------SNC-----IVSHIKNSVEAD-GRKRPAVSMIDKDHI 493 (573)
Q Consensus 431 ~~~~k~lIF~~s~~~~~~l~~~L~~~----g~~~~~~-------~~~-----~~~~~l~~F~~~-g~~~~l~~lvd~~s~ 493 (573)
+.++||||+++..++.|+..|... ++.+..+ .|| +|.+++++| ++ |..++|++ ||+++
T Consensus 631 --~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F-r~~g~~~VLVa-T~~~~- 705 (936)
T 4a2w_A 631 --QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF-KTSKDNRLLIA-TSVAD- 705 (936)
T ss_dssp --TCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------------------------CCSEEEE-ECC---
T ss_pred --CCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHh-hccCCeeEEEE-eCchh-
Confidence 689999999999999999999986 3333321 244 455689999 76 99998877 67884
Q ss_pred CCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccH
Q 008235 494 STAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDA 541 (573)
Q Consensus 494 rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~ 541 (573)
+|||+|+|++||+||+|.|+..|+||+|| ||. +.|.++.|++..+.
T Consensus 706 eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 706 EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp ----CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred cCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 89999999999999999999999999999 998 78999999987644
No 36
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.9e-41 Score=375.12 Aligned_cols=304 Identities=11% Similarity=0.025 Sum_probs=233.7
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG 283 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~ 283 (573)
+|+|+.++|.++.|+|++++|||| ||||++|++|+++.+.. .++++|||+||||||.|+++.+..+
T Consensus 173 lpiq~~~i~~l~~g~dvlv~a~TG-SGKT~~~~lpil~~l~~---------~~~~vLvl~PtreLa~Qi~~~l~~~---- 238 (618)
T 2whx_A 173 EPDYEVDEDIFRKKRLTIMDLHPG-AGKTKRILPSIVREALK---------RRLRTLILAPTRVVAAEMEEALRGL---- 238 (618)
T ss_dssp CCCCCCCGGGGSTTCEEEECCCTT-SSTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTTTS----
T ss_pred CCccccCHHHHhcCCeEEEEcCCC-CCHHHHHHHHHHHHHHh---------CCCeEEEEcChHHHHHHHHHHhcCC----
Confidence 889888999999999999999999 99999999999998865 3679999999999999999887633
Q ss_pred cEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcC-CCC
Q 008235 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSIS-GKP 359 (573)
Q Consensus 284 i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~-~~~ 359 (573)
.+. +.++. . ......+..+.+.|.+.|...+... ..++++++|||||||+| + ...+..|+..++ +++
T Consensus 239 -~v~-~~~~~-l----~~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~ 309 (618)
T 2whx_A 239 -PIR-YQTPA-V----KSDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEA 309 (618)
T ss_dssp -CEE-ECCTT-S----SCCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSC
T ss_pred -cee-Eeccc-c----eeccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCc
Confidence 222 22211 0 0011124467788888887666554 45899999999999998 5 556777777765 789
Q ss_pred cEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEE
Q 008235 360 HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYI 439 (573)
Q Consensus 360 q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF 439 (573)
|+++||||++..+..++. .++. .+.+.... +. .+...++..|.. . ..++|||
T Consensus 310 q~il~SAT~~~~~~~~~~---~~~~-~~~v~~~~--------------~~--~~~~~ll~~l~~---~-----~~~~LVF 361 (618)
T 2whx_A 310 AAIFMTATPPGSTDPFPQ---SNSP-IEDIEREI--------------PE--RSWNTGFDWITD---Y-----QGKTVWF 361 (618)
T ss_dssp EEEEECSSCTTCCCSSCC---CSSC-EEEEECCC--------------CS--SCCSSSCHHHHH---C-----CSCEEEE
T ss_pred cEEEEECCCchhhhhhhc---cCCc-eeeecccC--------------CH--HHHHHHHHHHHh---C-----CCCEEEE
Confidence 999999999986543222 1232 33332210 00 000111222322 1 4699999
Q ss_pred ecChhhHHHHHHHHHHCCCCeeeecCCCHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEE---------------
Q 008235 440 VGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVV--------------- 504 (573)
Q Consensus 440 ~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~V--------------- 504 (573)
|+|+..|+.++..|...++.+..+|..++.++++.| ++|+..+|++ ||++ ++||||| |++|
T Consensus 362 ~~s~~~a~~l~~~L~~~g~~v~~lhg~~R~~~l~~F-~~g~~~VLVa-Tdv~-~rGiDi~-v~~VId~g~~~~P~~~~~~ 437 (618)
T 2whx_A 362 VPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKT-KLTDWDFVVT-TDIS-EMGANFR-AGRVIDPRRCLKPVILTDG 437 (618)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEECTTTHHHHTTHH-HHSCCSEEEE-CGGG-GTTCCCC-CSEEEECCEEEEEEEECSS
T ss_pred ECChhHHHHHHHHHHHcCCcEEEEChHHHHHHHHhh-cCCCcEEEEE-CcHH-HcCcccC-ceEEEECcceecceecccC
Confidence 999999999999999999999987656788899999 9999999888 7888 4999997 9998
Q ss_pred -----EeCCCCCCHHHHHHHHhccccCCC-cceEEEEec---cccHHHHHHHHHHHHHcCCCCCHHH
Q 008235 505 -----IVPDFIISMKNYVEILTSMARHTV-SGILHSFFT---KDDAAHAGQMIEILEQCGQVVPDAL 562 (573)
Q Consensus 505 -----I~~d~P~s~~~YiqR~GR~gR~g~-~G~~i~~~~---~~d~~~~~~l~~~l~~~~~~vp~~l 562 (573)
|||++|.+.++|+||+|||||+|. .|.|++|++ +.|...+..++..+...+..+|+.+
T Consensus 438 ~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~~ 504 (618)
T 2whx_A 438 PERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 504 (618)
T ss_dssp SCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred CCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCcch
Confidence 788889999999999999999975 899999998 8888899999988888777777643
No 37
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=7.9e-41 Score=358.97 Aligned_cols=308 Identities=11% Similarity=0.012 Sum_probs=223.6
Q ss_pred CCccCCCCCCCHHHHHHHHHHhcCCcE-EEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHH
Q 008235 194 GVEQDNPLFVNSWGIEFWKCYSSAKDI-LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (573)
Q Consensus 194 g~~~p~~~~~t~iQ~~aip~il~g~dv-l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi 272 (573)
|+.+| +|+|+ +||.+++|+|+ +++|||| ||||++|++|++..+.. .++++||++|||+||.|+
T Consensus 1 G~~q~-----~~iq~-~i~~~l~~~~~~lv~a~TG-sGKT~~~~~~~l~~~~~---------~~~~~lvl~Ptr~La~Q~ 64 (451)
T 2jlq_A 1 GSAMG-----EPDYE-VDEDIFRKKRLTIMDLHPG-AGKTKRILPSIVREALL---------RRLRTLILAPTRVVAAEM 64 (451)
T ss_dssp CCCCC-----SCCCC-CCGGGGSTTCEEEECCCTT-SSCCTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHH
T ss_pred CCCCC-----CCcHH-HHHHHHhcCCeEEEECCCC-CCHhhHHHHHHHHHHHh---------cCCcEEEECCCHHHHHHH
Confidence 56677 99985 79999999888 8889999 99999999999988764 367999999999999999
Q ss_pred HHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC--cch-HH
Q 008235 273 RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDT-LS 349 (573)
Q Consensus 273 ~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~--~~~-l~ 349 (573)
++.+..+ .+....+.... .. ..+..|.++|++.|...+... ..+.++++|||||||++ + ... +.
T Consensus 65 ~~~l~g~-----~v~~~~~~~~~-----~~-~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~ 131 (451)
T 2jlq_A 65 EEALRGL-----PIRYQTPAVKS-----DH-TGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARG 131 (451)
T ss_dssp HHHTTTS-----CEEECCTTCSC-----CC-CSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHH
T ss_pred HHHhcCc-----eeeeeeccccc-----cC-CCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHH
Confidence 9987633 32222221110 11 125679999999998887654 56889999999999977 4 222 22
Q ss_pred HHHH-hcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccC
Q 008235 350 LIRQ-SISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428 (573)
Q Consensus 350 ~Il~-~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~ 428 (573)
.+.. ..++++|+++||||++..+..+ +..++. .+.+.... .... + . .+...+...
T Consensus 132 ~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~-~~~~~~~~--p~~~----~--~--------~~~~~l~~~---- 187 (451)
T 2jlq_A 132 YISTRVEMGEAAAIFMTATPPGSTDPF---PQSNSP-IEDIEREI--PERS----W--N--------TGFDWITDY---- 187 (451)
T ss_dssp HHHHHHHTTSCEEEEECSSCTTCCCSS---CCCSSC-EEEEECCC--CSSC----C--S--------SSCHHHHHC----
T ss_pred HHHHhhcCCCceEEEEccCCCccchhh---hcCCCc-eEecCccC--Cchh----h--H--------HHHHHHHhC----
Confidence 2222 2356899999999998754332 223332 33332110 0000 0 0 011233321
Q ss_pred CCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCC
Q 008235 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPD 508 (573)
Q Consensus 429 ~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d 508 (573)
.+++||||+|+..|+.++..|...|+.+..+|...+.++++.| ++|+..+|++ ||++ .+|||+|+ ++|||||
T Consensus 188 ----~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~~~~~f-~~g~~~vLVa-T~v~-~~GiDip~-~~VI~~~ 259 (451)
T 2jlq_A 188 ----QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKT-KLTDWDFVVT-TDIS-EMGANFRA-GRVIDPR 259 (451)
T ss_dssp ----CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGG-GSSCCSEEEE-CGGG-GSSCCCCC-SEEEECC
T ss_pred ----CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHHHHHHhh-ccCCceEEEE-CCHH-HhCcCCCC-CEEEECC
Confidence 4699999999999999999999999999876444566689999 9999999888 6788 49999999 9999999
Q ss_pred --------------------CCCCHHHHHHHHhccccCCC-cceEEEEecccc---HHHHHHHHHHHHHcCCCCCHHH
Q 008235 509 --------------------FIISMKNYVEILTSMARHTV-SGILHSFFTKDD---AAHAGQMIEILEQCGQVVPDAL 562 (573)
Q Consensus 509 --------------------~P~s~~~YiqR~GR~gR~g~-~G~~i~~~~~~d---~~~~~~l~~~l~~~~~~vp~~l 562 (573)
+|.+..+|+||+|||||.|. .|.|++|+...+ ......+...+...++++|+++
T Consensus 260 ~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 260 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred CcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 99999999999999999998 899988875331 1222223444556777888765
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.5e-38 Score=369.04 Aligned_cols=311 Identities=10% Similarity=0.049 Sum_probs=233.3
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 200 PLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 200 ~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
++.++|+|.++|+.+++|+|++++|||| ||||++|++|+...+. .+.++||++||++|+.|+++.+..+
T Consensus 37 ~f~l~~~Q~~aI~~il~g~~vlv~apTG-sGKTlv~~~~i~~~~~----------~g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQGDSVFVAAHTS-AGKTVVAEYAIAMAHR----------NMTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp SSCCCHHHHHHHHHHHTTCEEEEECCTT-SCSHHHHHHHHHHHHH----------TTCEEEEEESCGGGHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEECCC-CcHHHHHHHHHHHHHh----------cCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3446999999999999999999999999 9999999999887543 3679999999999999999999886
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcC
Q 008235 280 KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSIS 356 (573)
Q Consensus 280 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~ 356 (573)
.. ++.+..++|+.... ..++|+|+||++|.+++......+.++.+|||||||++.+ ...+..++..++
T Consensus 106 ~~-~~~v~~l~G~~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 106 FD-DVNIGLITGDVQIN--------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp C---CCEEEECSSCEEC--------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred cC-CCeEEEEeCCCccC--------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 32 78889999987533 2589999999999999998888899999999999999988 677889999999
Q ss_pred CCCcEEEEeccCCccHHHHHHHHhc---CCceEEEcCCCccccccceEEEEEE-------c-------------------
Q 008235 357 GKPHTVVFNDCLTYTSVPAVQNLLL---GSINRLSLNQSVASQSACIIQSVNV-------C------------------- 407 (573)
Q Consensus 357 ~~~q~l~~SAT~~~~~~~~~~~~l~---~~~~~i~~~~~~~~~~~~i~~~~~~-------~------------------- 407 (573)
+..|++++|||+++.. +++..+.. .++..+..... ...+.+.+.. +
T Consensus 177 ~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r----~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (997)
T 4a4z_A 177 QHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR----PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILN 251 (997)
T ss_dssp TTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC----SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC
T ss_pred cCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCC----CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhh
Confidence 9999999999998743 45544432 33222222211 1112222111 0
Q ss_pred ------------------------------------------------------------------CChhHHHHHHHHHH
Q 008235 408 ------------------------------------------------------------------ASDEEKILKGIQVL 421 (573)
Q Consensus 408 ------------------------------------------------------------------~~~~~k~~~l~~~L 421 (573)
.....++..+...|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l 331 (997)
T 4a4z_A 252 GESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYL 331 (997)
T ss_dssp -----------------------------------------------------------------CCCCTTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 00112233333333
Q ss_pred HHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCC---------------------------------------eee
Q 008235 422 DHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS---------------------------------------IST 462 (573)
Q Consensus 422 ~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~---------------------------------------~~~ 462 (573)
.. .. ..++||||+|+..|+.++..|...++. +.
T Consensus 332 ~~----~~---~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~- 403 (997)
T 4a4z_A 332 RK----RE---LLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIA- 403 (997)
T ss_dssp HH----TT---CCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEE-
T ss_pred Hh----CC---CCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCee-
Confidence 32 22 579999999999999999999877663 33
Q ss_pred ecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCC---------CHHHHHHHHhccccCC-
Q 008235 463 GSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFII---------SMKNYVEILTSMARHT- 527 (573)
Q Consensus 463 ~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~---------s~~~YiqR~GR~gR~g- 527 (573)
.+||. +..+++.| +.|..++|++ |++. ++|||+|+ ..||++++|. +..+|+||+|||||.|
T Consensus 404 ~~H~gl~~~~R~~v~~~F-~~G~~kVLvA-T~~~-a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~ 479 (997)
T 4a4z_A 404 VHHGGLLPIVKELIEILF-SKGFIKVLFA-TETF-AMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGL 479 (997)
T ss_dssp EECTTSCHHHHHHHHHHH-HTTCCSEEEE-CTHH-HHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTT
T ss_pred eecCCCCHHHHHHHHHHH-HCCCCcEEEE-chHh-hCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCC
Confidence 35775 44589999 9999999888 6677 47999999 5555555555 9999999999999998
Q ss_pred -CcceEEEEec--cccHHHHHHH
Q 008235 528 -VSGILHSFFT--KDDAAHAGQM 547 (573)
Q Consensus 528 -~~G~~i~~~~--~~d~~~~~~l 547 (573)
..|.|++++. +.+...+..+
T Consensus 480 ~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 480 DSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp CSSEEEEEECCSSCCCHHHHHHH
T ss_pred CcceEEEEecCCCcchHHHHHHH
Confidence 5788888873 3355554443
No 39
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.6e-39 Score=363.40 Aligned_cols=307 Identities=9% Similarity=0.033 Sum_probs=225.9
Q ss_pred CCCCHHHHHHHHHHhcC------CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHH
Q 008235 201 LFVNSWGIEFWKCYSSA------KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g------~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~ 274 (573)
+.+|++|.++|+.++.+ +|+++++||| ||||++|++|++..+.. +.+++|++||++||.|+++
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TG-SGKTlvall~il~~l~~----------g~qvlvlaPtr~La~Q~~~ 435 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVG-SGKTVVAQLAILDNYEA----------GFQTAFMVPTSILAIQHYR 435 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSS-SSHHHHHHHHHHHHHHH----------TSCEEEECSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCC-CCHHHHHHHHHHHHHHc----------CCeEEEEeCcHHHHHHHHH
Confidence 34599999999999886 6999999999 99999999999988752 6789999999999999999
Q ss_pred HHhhh-hcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHH
Q 008235 275 VCKPL-KAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSL 350 (573)
Q Consensus 275 ~~~~l-~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~ 350 (573)
.+..+ ...+++++.++|+...... +..+..+.++|+|+||+.|.+ .+.+.++++|||||||++.. .+ +.
T Consensus 436 ~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~-~q-r~ 508 (780)
T 1gm5_A 436 RTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGV-KQ-RE 508 (780)
T ss_dssp HHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC-------C
T ss_pred HHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhH-HH-HH
Confidence 99987 5569999999999886553 455666569999999998754 45688999999999999753 11 11
Q ss_pred HHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCC
Q 008235 351 IRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFH 430 (573)
Q Consensus 351 Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~ 430 (573)
.+.....++|+++||||+.+.... ..++.+.- ...+... ......+...+... .+...+...+...+..
T Consensus 509 ~l~~~~~~~~vL~mSATp~p~tl~--~~~~g~~~-~s~i~~~-p~~r~~i~~~~~~~----~~~~~l~~~i~~~l~~--- 577 (780)
T 1gm5_A 509 ALMNKGKMVDTLVMSATPIPRSMA--LAFYGDLD-VTVIDEM-PPGRKEVQTMLVPM----DRVNEVYEFVRQEVMR--- 577 (780)
T ss_dssp CCCSSSSCCCEEEEESSCCCHHHH--HHHTCCSS-CEEECCC-CSSCCCCEECCCCS----STHHHHHHHHHHHTTT---
T ss_pred HHHHhCCCCCEEEEeCCCCHHHHH--HHHhCCcc-eeeeecc-CCCCcceEEEEecc----chHHHHHHHHHHHHhc---
Confidence 122234578999999998764333 33344331 1112211 11122333322221 2234455666555433
Q ss_pred CCCCcEEEEecCh--------hhHHHHHHHHHH---CCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccC
Q 008235 431 SEPLKVLYIVGKD--------SKFQNLVSTLKC---KGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHIS 494 (573)
Q Consensus 431 ~~~~k~lIF~~s~--------~~~~~l~~~L~~---~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~r 494 (573)
+.+++|||+++ ..++.+++.|.. .++.+.. +||+ +.++++.| ++|+..++++ |++. .+
T Consensus 578 --g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~-lHG~m~~~eR~~v~~~F-~~G~~~ILVa-T~vi-e~ 651 (780)
T 1gm5_A 578 --GGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGL-MHGRLSQEEKDRVMLEF-AEGRYDILVS-TTVI-EV 651 (780)
T ss_dssp --SCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCC-CCSSSCCSCSHHHHHHH-TTTSSSBCCC-SSCC-CS
T ss_pred --CCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEE-EeCCCCHHHHHHHHHHH-HCCCCeEEEE-CCCC-Cc
Confidence 46899999976 457888888887 3566664 5764 56799999 9999999877 5677 48
Q ss_pred CCccCCCCEEEeCCCCC-CHHHHHHHHhccccCCCcceEEEEeccccHH
Q 008235 495 TAELEEYEVVIVPDFII-SMKNYVEILTSMARHTVSGILHSFFTKDDAA 542 (573)
Q Consensus 495 GlDip~v~~VI~~d~P~-s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~ 542 (573)
|+|+|++++||+|++|+ +...|.||+||+||.|..|.|++++++.+..
T Consensus 652 GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 652 GIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp CSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred cccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 99999999999999997 6888999999999999999999999854433
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.7e-38 Score=377.52 Aligned_cols=338 Identities=12% Similarity=0.088 Sum_probs=247.4
Q ss_pred HHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcC-CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEE
Q 008235 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (573)
Q Consensus 183 ~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Li 261 (573)
.+...++++..+|..+ +|+|.++++.++++ .|++++|||| ||||++|.+|++..+... .+.++||
T Consensus 912 ~~~~~e~l~~~~f~~f-----npiQ~q~~~~l~~~~~nvlv~APTG-SGKTliaelail~~l~~~--------~~~kavy 977 (1724)
T 4f92_B 912 RNSAFESLYQDKFPFF-----NPIQTQVFNTVYNSDDNVFVGAPTG-SGKTICAEFAILRMLLQS--------SEGRCVY 977 (1724)
T ss_dssp CCHHHHTTTTTTCSBC-----CHHHHHHHHHHHSCCSCEEEECCTT-SCCHHHHHHHHHHHHHHC--------TTCCEEE
T ss_pred cCHHHHHHHHhcCCCC-----CHHHHHHHHHHhcCCCcEEEEeCCC-CCchHHHHHHHHHHHHhC--------CCCEEEE
Confidence 4455567777889888 99999999999875 7899999999 999999999999998765 3668999
Q ss_pred EcccHHHHHHHHHHHhh-hhc-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC--CCCCCccEEEEe
Q 008235 262 LVSSQEKAAKVRSVCKP-LKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA--IDVSGVSLLVVD 337 (573)
Q Consensus 262 l~PtreLa~Qi~~~~~~-l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~--~~l~~l~~lViD 337 (573)
++|||+||.|+++.+.. |+. +|++++.++|+...+. +.+. +++|+|+|||+|..++++.. ..+++|++||+|
T Consensus 978 i~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~--~~~~--~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViD 1053 (1724)
T 4f92_B 978 ITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL--KLLG--KGNIIISTPEKWDILSRRWKQRKNVQNINLFVVD 1053 (1724)
T ss_dssp ECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH--HHHH--HCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEEC
T ss_pred EcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcch--hhcC--CCCEEEECHHHHHHHHhCcccccccceeeEEEee
Confidence 99999999999998876 544 6999999999865433 2333 48999999999977776532 347899999999
Q ss_pred CcccccC--cchHHHHHH-------hcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcC
Q 008235 338 RLDSLSK--GDTLSLIRQ-------SISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCA 408 (573)
Q Consensus 338 Ead~ll~--~~~l~~Il~-------~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~ 408 (573)
|+|.|.+ +..++.++. .++.+.|++++|||+++ ..+++.++-..+.....+... ..+..++.++...+
T Consensus 1054 E~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~--~RPvpL~~~i~~~~ 1130 (1724)
T 4f92_B 1054 EVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPN--VRPVPLELHIQGFN 1130 (1724)
T ss_dssp CGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGG--GCSSCEEEEEEEEC
T ss_pred chhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCC--CCCCCeEEEEEecc
Confidence 9998887 444444433 34678999999999997 677776665444333444432 12223555544433
Q ss_pred C--hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC------------------------------
Q 008235 409 S--DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK------------------------------ 456 (573)
Q Consensus 409 ~--~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~------------------------------ 456 (573)
. ...+...+...+...+... .+..++||||+|+..|+.++..|...
T Consensus 1131 ~~~~~~~~~~~~~~~~~~i~~~--~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L 1208 (1724)
T 4f92_B 1131 ISHTQTRLLSMAKPVYHAITKH--SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTL 1208 (1724)
T ss_dssp CCSHHHHHHTTHHHHHHHHHHH--CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHH
T ss_pred CCCchhhhhhhcchHHHHHHHh--cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHH
Confidence 2 2222222222121111111 12579999999999999888766431
Q ss_pred ----CCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEe----------CCCCCCHHHHH
Q 008235 457 ----GYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIV----------PDFIISMKNYV 517 (573)
Q Consensus 457 ----g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~----------~d~P~s~~~Yi 517 (573)
...+ ..||+. |..+.+.| ++|..+++++ |++. ++|||+|.+.+||. +..|.++.+|+
T Consensus 1209 ~~~l~~GI-a~hHagL~~~~R~~VE~lF-~~G~i~VLva-T~tl-A~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~ 1284 (1724)
T 4f92_B 1209 KETLLNGV-GYLHEGLSPMERRLVEQLF-SSGAIQVVVA-SRSL-CWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVL 1284 (1724)
T ss_dssp HHHHHTTE-EEECTTSCHHHHHHHHHHH-HHTSBCEEEE-EGGG-SSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHH
T ss_pred HHHHhCCE-EEECCCCCHHHHHHHHHHH-HCCCCeEEEE-ChHH-HcCCCCCccEEEEecCccccCcccccCCCCHHHHH
Confidence 0112 346775 44578999 9999999988 5566 58999999999993 33578999999
Q ss_pred HHHhccccCCC--cceEEEEeccccHHHHHHH
Q 008235 518 EILTSMARHTV--SGILHSFFTKDDAAHAGQM 547 (573)
Q Consensus 518 qR~GR~gR~g~--~G~~i~~~~~~d~~~~~~l 547 (573)
||+|||||.|. .|.|++|+.+.+..++..+
T Consensus 1285 Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1285 QMVGHANRPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp HHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred HhhccccCCCCCCceEEEEEecchHHHHHHHH
Confidence 99999999996 7999999999888777655
No 41
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=8.9e-41 Score=357.15 Aligned_cols=287 Identities=10% Similarity=0.037 Sum_probs=203.7
Q ss_pred HHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCC
Q 008235 213 CYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPG 292 (573)
Q Consensus 213 ~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg 292 (573)
.+++|+|++++|||| ||||++|++|+++.+.. .++++||++||++||.|+++.+..+ ++. ...+.
T Consensus 4 ~l~~g~~vlv~a~TG-SGKT~~~l~~~l~~~~~---------~~~~~lil~Ptr~La~Q~~~~l~~~---~v~--~~~~~ 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPG-AGKTRRFLPQILAECAR---------RRLRTLVLAPTRVVLSEMKEAFHGL---DVK--FHTQA 68 (440)
T ss_dssp TTSTTCEEEECCCTT-SSTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTTTS---CEE--EESSC
T ss_pred HhhCCCCEEEEcCCC-CCHHHHHHHHHHHHHHh---------cCCeEEEEcchHHHHHHHHHHHhcC---CeE--Eeccc
Confidence 356899999999999 99999999999998764 3679999999999999999988755 332 11111
Q ss_pred CCHHHHHHHhhcCCCcEEEeCHHHHHHHHHc--------CCCCCCCccEEEEeCcccccC---cchHHHHHHhc-CCCCc
Q 008235 293 AAIDHQITGLRSCEPEFLVSTPERLLKLVSL--------KAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSI-SGKPH 360 (573)
Q Consensus 293 ~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~--------~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l-~~~~q 360 (573)
. -.|+||+++++++.. ....++++++|||||||++ + ...+..+...+ +.++|
T Consensus 69 ~---------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~ 132 (440)
T 1yks_A 69 F---------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESA 132 (440)
T ss_dssp C---------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCE
T ss_pred c---------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCce
Confidence 0 037777766543332 2245889999999999998 4 12222222222 46799
Q ss_pred EEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEe
Q 008235 361 TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIV 440 (573)
Q Consensus 361 ~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~ 440 (573)
+++||||+++.+..++.. ..++ ......+... ... .++..+.. . ..++||||
T Consensus 133 ~l~~SAT~~~~~~~~~~~--~~~~----------------~~~~~~~~~~-~~~-~~~~~l~~---~-----~~~~lVF~ 184 (440)
T 1yks_A 133 TILMTATPPGTSDEFPHS--NGEI----------------EDVQTDIPSE-PWN-TGHDWILA---D-----KRPTAWFL 184 (440)
T ss_dssp EEEECSSCTTCCCSSCCC--SSCE----------------EEEECCCCSS-CCS-SSCHHHHH---C-----CSCEEEEC
T ss_pred EEEEeCCCCchhhhhhhc--CCCe----------------eEeeeccChH-HHH-HHHHHHHh---c-----CCCEEEEe
Confidence 999999998764422211 1111 1111111111 011 11122222 1 46999999
Q ss_pred cChhhHHHHHHHHHHCCCCeeeecCCCHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEe--------------
Q 008235 441 GKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIV-------------- 506 (573)
Q Consensus 441 ~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~-------------- 506 (573)
+++..|+.++..|...++.+..+|..++.++++.| ++|+..+|++ ||+. .+|||+| +++||+
T Consensus 185 ~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F-~~g~~~vLVa-T~v~-e~GiDip-v~~VI~~g~~~~pv~~~~~~ 260 (440)
T 1yks_A 185 PSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTI-KQKKPDFILA-TDIA-EMGANLC-VERVLDCRTAFKPVLVDEGR 260 (440)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEECCSSSCC---------CCCSEEEE-SSST-TCCTTCC-CSEEEECCEEEEEEEETTTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhh-cCCCceEEEE-CChh-heeeccC-ceEEEeCCccceeeeccccc
Confidence 99999999999999999999876555777899999 9999999888 6787 4899999 999996
Q ss_pred -----CCCCCCHHHHHHHHhccccC-CCcceEEEEe---ccccHHHHHHHHHHHHHcCCCCCHHH
Q 008235 507 -----PDFIISMKNYVEILTSMARH-TVSGILHSFF---TKDDAAHAGQMIEILEQCGQVVPDAL 562 (573)
Q Consensus 507 -----~d~P~s~~~YiqR~GR~gR~-g~~G~~i~~~---~~~d~~~~~~l~~~l~~~~~~vp~~l 562 (573)
|++|.+..+|+||+||+||. |..|.|++|+ ++.|...+..+...+...+.++|..+
T Consensus 261 ~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~ 325 (440)
T 1yks_A 261 KVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGGM 325 (440)
T ss_dssp EEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGGC
T ss_pred ceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccccc
Confidence 89999999999999999997 6899999996 68888889999888888888887643
No 42
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.4e-37 Score=306.23 Aligned_cols=224 Identities=16% Similarity=0.271 Sum_probs=196.7
Q ss_pred cccceEEccCCCCCCCCCCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCc
Q 008235 149 ERAEVHLNGKSCANGHHGQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSS 228 (573)
Q Consensus 149 ~~~~i~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~ 228 (573)
....|.+.|.+.|.+ ..+|++.++++.+ .+++.+.||..| +|+|.++||.+++|+|++++||||
T Consensus 13 ~~~~i~~~~~~~p~~--~~~f~~~~l~~~l--------~~~l~~~g~~~~-----~~~Q~~~i~~~~~g~~~l~~apTG- 76 (242)
T 3fe2_A 13 RSKEITVRGHNCPKP--VLNFYEANFPANV--------MDVIARQNFTEP-----TAIQAQGWPVALSGLDMVGVAQTG- 76 (242)
T ss_dssp HHHTEEEESSCCCCC--CSSTTTTTCCHHH--------HHHHHTTTCCSC-----CHHHHHHHHHHHHTCCEEEEECTT-
T ss_pred hcCceEEeCCCCCCc--cCCHhhcCCCHHH--------HHHHHHCCCCCC-----CHHHHHHHHHHhCCCCEEEECCCc-
Confidence 356788889888766 5667777777666 345566899999 999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcCCcEEEEeCCCCCHHHHHHHhhcCCC
Q 008235 229 TIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEP 307 (573)
Q Consensus 229 SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~~i~~~~~~gg~~~~~~~~~l~~~~~ 307 (573)
||||++|++|++.++...+... ...++++|||+|||+|+.|+++.++.+ ...++++.+++||.....+...+.. ++
T Consensus 77 sGKT~~~~l~~l~~l~~~~~~~--~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~ 153 (242)
T 3fe2_A 77 SGKTLSYLLPAIVHINHQPFLE--RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER-GV 153 (242)
T ss_dssp SCHHHHHHHHHHHHHHTSCCCC--TTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH-CC
T ss_pred CHHHHHHHHHHHHHHHhccccc--cCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC-CC
Confidence 9999999999999987653221 125789999999999999999999998 4469999999999999998888888 89
Q ss_pred cEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCc
Q 008235 308 EFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSI 384 (573)
Q Consensus 308 ~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~ 384 (573)
+|+|+||++|.+++..+...+.++++|||||||+|++ ...+..|+..+++++|+++||||+|+.+..+++.++.+|+
T Consensus 154 ~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~ 233 (242)
T 3fe2_A 154 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYI 233 (242)
T ss_dssp SEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred CEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCE
Confidence 9999999999999999888999999999999999987 7889999999999999999999999999999999999996
Q ss_pred eEEEcCCC
Q 008235 385 NRLSLNQS 392 (573)
Q Consensus 385 ~~i~~~~~ 392 (573)
.|.++..
T Consensus 234 -~i~~~~~ 240 (242)
T 3fe2_A 234 -HINIGAL 240 (242)
T ss_dssp -EEEECC-
T ss_pred -EEEecCC
Confidence 7877653
No 43
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=6.3e-39 Score=357.24 Aligned_cols=312 Identities=13% Similarity=0.036 Sum_probs=218.5
Q ss_pred HHhCCCc-----cCCCCCCCHHHH-----HHHHHHh------cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCC
Q 008235 190 MRHDGVE-----QDNPLFVNSWGI-----EFWKCYS------SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFS 253 (573)
Q Consensus 190 l~~~g~~-----~p~~~~~t~iQ~-----~aip~il------~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~ 253 (573)
++..||. .| ||||+ ++||.++ .|+|++++|||| ||||++|++|++..+..
T Consensus 203 l~~~Gf~~~~~~~p-----t~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTG-SGKTl~~ll~il~~l~~-------- 268 (673)
T 2wv9_A 203 LYGNGVILGNGAYV-----SAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPG-AGKTRRILPQIIKDAIQ-------- 268 (673)
T ss_dssp EEEEEEECSSSCEE-----EEEECC-------CCCCCGGGGSTTCEEEECCCTT-TTTTTTHHHHHHHHHHH--------
T ss_pred eeeccccccCCCcc-----CceeeccccccchHHHhhHHHHhcCCeEEEEeCCC-CCHHHHHHHHHHHHHHh--------
Confidence 4456777 67 99999 9999988 899999999999 99999999999988764
Q ss_pred CCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccE
Q 008235 254 FTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSL 333 (573)
Q Consensus 254 ~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~ 333 (573)
.++++|||+|||+||.|+++.+..+ ++. ...+.. ......+--+-+.+.+.+...+... ..++++++
T Consensus 269 -~~~~~lilaPTr~La~Q~~~~l~~~---~i~--~~~~~l------~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~l 335 (673)
T 2wv9_A 269 -KRLRTAVLAPTRVVAAEMAEALRGL---PVR--YLTPAV------QREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNL 335 (673)
T ss_dssp -TTCCEEEEESSHHHHHHHHHHTTTS---CCE--ECCC---------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSE
T ss_pred -CCCcEEEEccHHHHHHHHHHHHhcC---Cee--eecccc------cccCCHHHHHHHHHhhhhHHHHhcc-cccccceE
Confidence 3679999999999999999988765 332 111100 0011101123333444443333332 56899999
Q ss_pred EEEeCcccccC--cchHHHHHHhc-CCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCCh
Q 008235 334 LVVDRLDSLSK--GDTLSLIRQSI-SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASD 410 (573)
Q Consensus 334 lViDEad~ll~--~~~l~~Il~~l-~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~ 410 (573)
|||||||++-. ...+..+...+ +.++|+++||||++..+..+... ..|+ ..+.. .+..
T Consensus 336 vViDEaH~~~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i--~~v~~--------------~~~~- 396 (673)
T 2wv9_A 336 FVMDEAHFTDPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPV--HDVSS--------------EIPD- 396 (673)
T ss_dssp EEEESTTCCCHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE--EEEEC--------------CCCS-
T ss_pred EEEeCCcccCccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCce--EEEee--------------ecCH-
Confidence 99999999821 22333333333 36799999999998764322110 1111 11110 0110
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHHHHHHHHhcCCCCCeEEEEec
Q 008235 411 EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDK 490 (573)
Q Consensus 411 ~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~l~~F~~~g~~~~l~~lvd~ 490 (573)
.... .++..+ ... ..++||||+++..|+.++..|...++.+..+|..++.++++.| ++|+..+|++ ||+
T Consensus 397 ~~~~-~~l~~l---~~~-----~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~eR~~v~~~F-~~g~~~VLVa-Tdv 465 (673)
T 2wv9_A 397 RAWS-SGFEWI---TDY-----AGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKC-KNGDWDFVIT-TDI 465 (673)
T ss_dssp SCCS-SCCHHH---HSC-----CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGG-GTCCCSEEEE-CGG
T ss_pred HHHH-HHHHHH---HhC-----CCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChHHHHHHHHHH-HCCCceEEEE-Cch
Confidence 0000 111222 221 5799999999999999999999999999887556788899999 9999999888 678
Q ss_pred cccCCCccCCCCEEEe--------------------CCCCCCHHHHHHHHhccccC-CCcceEEEEe---ccccHHHHHH
Q 008235 491 DHISTAELEEYEVVIV--------------------PDFIISMKNYVEILTSMARH-TVSGILHSFF---TKDDAAHAGQ 546 (573)
Q Consensus 491 ~s~rGlDip~v~~VI~--------------------~d~P~s~~~YiqR~GR~gR~-g~~G~~i~~~---~~~d~~~~~~ 546 (573)
+ .+|||+| |++||| ||+|.+..+|+||+||+||. |+.|.|++|+ ++.|..++..
T Consensus 466 ~-e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ 543 (673)
T 2wv9_A 466 S-EMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHW 543 (673)
T ss_dssp G-GTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHH
T ss_pred h-hcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHH
Confidence 8 4899999 999998 67999999999999999999 7899999996 5778777777
Q ss_pred HHHHHHHcCCCCCH
Q 008235 547 MIEILEQCGQVVPD 560 (573)
Q Consensus 547 l~~~l~~~~~~vp~ 560 (573)
+...+.....+++.
T Consensus 544 ie~~~~l~~~~~~~ 557 (673)
T 2wv9_A 544 TEAKILLDNIHLPN 557 (673)
T ss_dssp HHHHHHHHTSCBTT
T ss_pred HHHHHhhhhccCCc
Confidence 77766555444444
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.6e-37 Score=373.31 Aligned_cols=336 Identities=11% Similarity=0.095 Sum_probs=245.0
Q ss_pred CCCccCCCCCCCHHHHHHHHHHhc-CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhcc-CCCCCCcEEEEEcccHHHHH
Q 008235 193 DGVEQDNPLFVNSWGIEFWKCYSS-AKDILETSGSSSTIVQIAWIVATAADSIARKEKE-GFSFTGPFLLFLVSSQEKAA 270 (573)
Q Consensus 193 ~g~~~p~~~~~t~iQ~~aip~il~-g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~-~~~~~~~~~Lil~PtreLa~ 270 (573)
.||.++ ++||++++|.++. ++|++++|||| ||||++|.+|++..+....... .....+.++|||+|+++||.
T Consensus 75 ~g~~~l-----n~iQs~~~~~al~~~~N~lv~APTG-sGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~ 148 (1724)
T 4f92_B 75 EGFKTL-----NRIQSKLYRAALETDENLLLCAPTG-AGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQ 148 (1724)
T ss_dssp TTCSBC-----CHHHHHTHHHHHTCCCCEEEECCTT-SCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHH
T ss_pred CCCCCC-----CHHHHHHHHHHHcCCCcEEEEeCCc-chHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHH
Confidence 478888 9999999999886 68999999999 9999999999999997653221 11235789999999999999
Q ss_pred HHHHHHhh-hhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC--CCCCCccEEEEeCcccccC--c
Q 008235 271 KVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA--IDVSGVSLLVVDRLDSLSK--G 345 (573)
Q Consensus 271 Qi~~~~~~-l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~--~~l~~l~~lViDEad~ll~--~ 345 (573)
|+++.+.+ |..+|+++..++|+.....+ .+ . +++|+|+|||+|..++.+.. ..++++++|||||+|.+.+ +
T Consensus 149 e~~~~l~~~~~~~gi~V~~~tGd~~~~~~--~~-~-~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG 224 (1724)
T 4f92_B 149 EMVGSFGKRLATYGITVAELTGDHQLCKE--EI-S-ATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRG 224 (1724)
T ss_dssp HHHHHHHHHHTTTTCCEEECCSSCSSCCT--TG-G-GCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTH
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCCCCcc--cc-C-CCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccH
Confidence 99999976 57789999999999875442 12 2 58999999999865555433 2378999999999997776 4
Q ss_pred chHHHHHH-------hcCCCCcEEEEeccCCccHHHHHHHHhcCCce-EEEcCCCccccccceEEEEEEcCC--hhHHHH
Q 008235 346 DTLSLIRQ-------SISGKPHTVVFNDCLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCAS--DEEKIL 415 (573)
Q Consensus 346 ~~l~~Il~-------~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~-~i~~~~~~~~~~~~i~~~~~~~~~--~~~k~~ 415 (573)
..++.++. .+++..|++++|||+|+ ..++++.+-..+.. ...++.. ..+-.+++.++.... ...+..
T Consensus 225 ~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~--~RPvpL~~~~~~~~~~~~~~~~~ 301 (1724)
T 4f92_B 225 PVLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNS--FRPVPLEQTYVGITEKKAIKRFQ 301 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGG--GCSSCEEEECCEECCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCC--CccCccEEEEeccCCcchhhhhH
Confidence 44544443 35788999999999997 66777654433311 2222221 112246666655432 223333
Q ss_pred HHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC----C---------------------------------C
Q 008235 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK----G---------------------------------Y 458 (573)
Q Consensus 416 ~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~----g---------------------------------~ 458 (573)
.+...+...+.... ...++||||+|++.|+.++..|... + .
T Consensus 302 ~~~~~~~~~v~~~~--~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 379 (1724)
T 4f92_B 302 IMNEIVYEKIMEHA--GKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY 379 (1724)
T ss_dssp HHHHHHHHHHTTCC--SSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTT
T ss_pred HHHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhc
Confidence 44444444333332 2568999999999999988877542 0 1
Q ss_pred CeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEe----CC------CCCCHHHHHHHHhcc
Q 008235 459 SISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIV----PD------FIISMKNYVEILTSM 523 (573)
Q Consensus 459 ~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~----~d------~P~s~~~YiqR~GR~ 523 (573)
.+ ..|||. |..+.+.| ++|..+++++ |++. ++|+|+|.+++||. |+ .|-++.+|+||+|||
T Consensus 380 Gv-a~HHagL~~~~R~~vE~~F-~~G~i~vlva-TsTL-a~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRA 455 (1724)
T 4f92_B 380 GF-AIHHAGMTRVDRTLVEDLF-ADKHIQVLVS-TATL-AWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRA 455 (1724)
T ss_dssp TE-EEECSSSCTHHHHHHHHHH-HTTCCCEEEE-CHHH-HHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTB
T ss_pred CE-EEEcCCCCHHHHHHHHHHH-HCCCCeEEEE-cchh-HhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhc
Confidence 12 347874 45589999 9999999888 5455 47999999999996 44 356899999999999
Q ss_pred ccCCC--cceEEEEeccccHHHHHHH
Q 008235 524 ARHTV--SGILHSFFTKDDAAHAGQM 547 (573)
Q Consensus 524 gR~g~--~G~~i~~~~~~d~~~~~~l 547 (573)
||.|. .|.++++.++.+...+..+
T Consensus 456 GR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 456 GRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp SCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred cCCCCCCccEEEEEecchhHHHHHHH
Confidence 99984 7999999998877665544
No 45
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2e-36 Score=356.11 Aligned_cols=304 Identities=9% Similarity=0.026 Sum_probs=234.8
Q ss_pred CCCCCHHHHHHHHHHhc----CC--cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHH
Q 008235 200 PLFVNSWGIEFWKCYSS----AK--DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (573)
Q Consensus 200 ~~~~t~iQ~~aip~il~----g~--dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~ 273 (573)
++.+||+|.++|+.++. |+ |+++++||| ||||++|+++++..+. .+.+++||+||++||.|++
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TG-sGKT~val~aa~~~~~----------~g~~vlvlvPt~~La~Q~~ 669 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVG-FGKTEVAMRAAFLAVD----------NHKQVAVLVPTTLLAQQHY 669 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCC-TTTHHHHHHHHHHHHT----------TTCEEEEECSSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCC-CCHHHHHHHHHHHHHH----------hCCeEEEEechHHHHHHHH
Confidence 34459999999999987 66 999999999 9999999999887553 3679999999999999999
Q ss_pred HHHhhh-hcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHH
Q 008235 274 SVCKPL-KAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLS 349 (573)
Q Consensus 274 ~~~~~l-~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~ 349 (573)
+.+..+ ...++++..++|+.+...+ ...+..+.++|+|+||+.|. ..+.+.++++|||||||++. ....
T Consensus 670 ~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~g--~~~~ 742 (1151)
T 2eyq_A 670 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRFG--VRHK 742 (1151)
T ss_dssp HHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGSC--HHHH
T ss_pred HHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhcC--hHHH
Confidence 999864 6668999999887765443 45566656999999997652 35678999999999999973 3445
Q ss_pred HHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCC
Q 008235 350 LIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHF 429 (573)
Q Consensus 350 ~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~ 429 (573)
.++..++.+.++++||||+++.....+...+.++. .+.... .....+...+.... .. .....++..+ ..
T Consensus 743 ~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~-~i~~~~---~~r~~i~~~~~~~~-~~---~i~~~il~~l-~~-- 811 (1151)
T 2eyq_A 743 ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS-IIATPP---ARRLAVKTFVREYD-SM---VVREAILREI-LR-- 811 (1151)
T ss_dssp HHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEE-ECCCCC---CBCBCEEEEEEECC-HH---HHHHHHHHHH-TT--
T ss_pred HHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCce-EEecCC---CCccccEEEEecCC-HH---HHHHHHHHHH-hc--
Confidence 56666677899999999998776665555554432 222221 22234555555443 22 2222333333 22
Q ss_pred CCCCCcEEEEecChhhHHHHHHHHHHC--CCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCC
Q 008235 430 HSEPLKVLYIVGKDSKFQNLVSTLKCK--GYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYE 502 (573)
Q Consensus 430 ~~~~~k~lIF~~s~~~~~~l~~~L~~~--g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~ 502 (573)
+++++|||+++..++.++..|... ++.+.. +||+ +.++++.| ++|+..+|++ |++.. +|||+|+++
T Consensus 812 ---g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~-lhg~~~~~eR~~il~~F-~~g~~~VLVa-T~v~e-~GiDip~v~ 884 (1151)
T 2eyq_A 812 ---GGQVYYLYNDVENIQKAAERLAELVPEARIAI-GHGQMRERELERVMNDF-HHQRFNVLVC-TTIIE-TGIDIPTAN 884 (1151)
T ss_dssp ---TCEEEEECCCSSCHHHHHHHHHHHCTTSCEEE-CCSSCCHHHHHHHHHHH-HTTSCCEEEE-SSTTG-GGSCCTTEE
T ss_pred ---CCeEEEEECCHHHHHHHHHHHHHhCCCCeEEE-EeCCCCHHHHHHHHHHH-HcCCCcEEEE-CCcce-eeecccCCc
Confidence 579999999999999999999987 677765 5775 45589999 8999999877 56773 799999999
Q ss_pred EEEeCCC-CCCHHHHHHHHhccccCCCcceEEEEeccc
Q 008235 503 VVIVPDF-IISMKNYVEILTSMARHTVSGILHSFFTKD 539 (573)
Q Consensus 503 ~VI~~d~-P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~ 539 (573)
+||+++. +.+...|+||+||+||.|+.|.|++++.+.
T Consensus 885 ~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 885 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred EEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999998 468999999999999999999999998764
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3e-38 Score=347.07 Aligned_cols=283 Identities=11% Similarity=-0.027 Sum_probs=207.3
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG 283 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~ 283 (573)
.++|..+++.+..++|++++|||| ||||++|.+|+++ .+.++||++|||+||.|+++.+... ++
T Consensus 219 ~~~q~~i~~~L~~~~~vlv~ApTG-SGKT~a~~l~ll~-------------~g~~vLVl~PTReLA~Qia~~l~~~--~g 282 (666)
T 3o8b_A 219 FTDNSSPPAVPQSFQVAHLHAPTG-SGKSTKVPAAYAA-------------QGYKVLVLNPSVAATLGFGAYMSKA--HG 282 (666)
T ss_dssp CCCCCSCCCCCSSCEEEEEECCTT-SCTTTHHHHHHHH-------------TTCCEEEEESCHHHHHHHHHHHHHH--HS
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCc-hhHHHHHHHHHHH-------------CCCeEEEEcchHHHHHHHHHHHHHH--hC
Confidence 345555555556779999999999 9999999999885 2558999999999999999876654 25
Q ss_pred cEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCc
Q 008235 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPH 360 (573)
Q Consensus 284 i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q 360 (573)
..+...+|+.. +.. +++|+|+|||+| +....+.++++++||||||| +++ ...+..|++.++..+|
T Consensus 283 ~~vg~~vG~~~-------~~~-~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~ 350 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITT-GAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGA 350 (666)
T ss_dssp CCCEEECSSCE-------ECC-CCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTC
T ss_pred CCeeEEECcEe-------ccC-CCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCC
Confidence 56667777754 233 799999999997 56677889999999999996 555 5668889999887777
Q ss_pred --EEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEE
Q 008235 361 --TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLY 438 (573)
Q Consensus 361 --~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lI 438 (573)
+++||||++..+. ...|. ...+.... ...+. ... .... + .... .+++||
T Consensus 351 ~llil~SAT~~~~i~------~~~p~-i~~v~~~~---~~~i~----~~~-~~~~-------l----~~~~---~~~vLV 401 (666)
T 3o8b_A 351 RLVVLATATPPGSVT------VPHPN-IEEVALSN---TGEIP----FYG-KAIP-------I----EAIR---GGRHLI 401 (666)
T ss_dssp SEEEEEESSCTTCCC------CCCTT-EEEEECBS---CSSEE----ETT-EEEC-------G----GGSS---SSEEEE
T ss_pred ceEEEECCCCCcccc------cCCcc-eEEEeecc---cchhH----HHH-hhhh-------h----hhcc---CCcEEE
Confidence 6778999997422 12221 11111100 00111 111 0000 0 0111 579999
Q ss_pred EecChhhHHHHHHHHHHCCCCeeeecCCCHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEE----------eCC
Q 008235 439 IVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVI----------VPD 508 (573)
Q Consensus 439 F~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI----------~~d 508 (573)
||+|++.|+.+++.|...|+.+.. +||++.+.. | +.+..++|++ +|++ +|||||| |++|| |||
T Consensus 402 Fv~Tr~~ae~la~~L~~~g~~v~~-lHG~l~q~e--r-~~~~~~VLVA-TdVa-erGIDId-V~~VI~~Gl~~~~ViNyD 474 (666)
T 3o8b_A 402 FCHSKKKCDELAAKLSGLGINAVA-YYRGLDVSV--I-PTIGDVVVVA-TDAL-MTGYTGD-FDSVIDCNTCVTQTVDFS 474 (666)
T ss_dssp ECSCHHHHHHHHHHHHTTTCCEEE-ECTTSCGGG--S-CSSSCEEEEE-CTTH-HHHCCCC-BSEEEECCEEEEEEEECC
T ss_pred EeCCHHHHHHHHHHHHhCCCcEEE-ecCCCCHHH--H-HhCCCcEEEE-CChH-HccCCCC-CcEEEecCcccccccccc
Confidence 999999999999999999999986 588877643 5 4555577666 6788 4899997 99998 777
Q ss_pred -----------CCCCHHHHHHHHhccccCCCcceEEEEeccccHHH--H--HHHHHHHH
Q 008235 509 -----------FIISMKNYVEILTSMARHTVSGILHSFFTKDDAAH--A--GQMIEILE 552 (573)
Q Consensus 509 -----------~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~--~--~~l~~~l~ 552 (573)
+|.+.++|+||+||||| |+.|. ++|+++.|... + ..+++.++
T Consensus 475 ydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~ 531 (666)
T 3o8b_A 475 LDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYD 531 (666)
T ss_dssp CSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHH
T ss_pred cccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhc
Confidence 89999999999999999 99999 99999876544 3 44444443
No 47
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1e-36 Score=332.56 Aligned_cols=308 Identities=9% Similarity=-0.000 Sum_probs=228.2
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcC
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF 282 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~ 282 (573)
++|+|.++++.++.++|+++++||| +|||++|++|++..+.. ...++|||+||++|+.|+++.+..+...
T Consensus 114 l~~~Q~~ai~~~~~~~~~ll~~~tG-sGKT~~~~~~~~~~~~~---------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~ 183 (510)
T 2oca_A 114 PHWYQKDAVFEGLVNRRRILNLPTS-AGRSLIQALLARYYLEN---------YEGKILIIVPTTALTTQMADDFVDYRLF 183 (510)
T ss_dssp CCHHHHHHHHHHHHHSEEEEECCST-TTHHHHHHHHHHHHHHH---------CSSEEEEEESSHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHhcCCcEEEeCCC-CCHHHHHHHHHHHHHhC---------CCCeEEEEECcHHHHHHHHHHHHHhhcC
Confidence 4999999999999999999999999 99999999998877653 2458999999999999999999988544
Q ss_pred -CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCCCCcE
Q 008235 283 -GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHT 361 (573)
Q Consensus 283 -~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~ 361 (573)
++.+..++||.....+ +.. +++|+|+||+.|.. .....+.++++|||||||++. ...+..++..++...++
T Consensus 184 ~~~~v~~~~~~~~~~~~---~~~-~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~-~~~~~~il~~~~~~~~~ 255 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDK---YKN-DAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLAT-GKSISSIISGLNNCMFK 255 (510)
T ss_dssp CGGGEEECGGGCCTTGG---GCT-TCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCC-HHHHHHHGGGCTTCCEE
T ss_pred CccceEEEecCCccccc---ccc-CCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCC-cccHHHHHHhcccCcEE
Confidence 5788999998776554 333 78999999997643 334567889999999999988 46688888888888999
Q ss_pred EEEeccCCccHHHHH-HHHhcCCceEEEcCCCc-----cccccceEEEEEEcC----------C----------hhHHHH
Q 008235 362 VVFNDCLTYTSVPAV-QNLLLGSINRLSLNQSV-----ASQSACIIQSVNVCA----------S----------DEEKIL 415 (573)
Q Consensus 362 l~~SAT~~~~~~~~~-~~~l~~~~~~i~~~~~~-----~~~~~~i~~~~~~~~----------~----------~~~k~~ 415 (573)
++||||++.....+. ...+..+. .+.+.... ......+........ . ...+..
T Consensus 256 l~lSATp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 256 FGLSGSLRDGKANIMQYVGMFGEI-FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEEESCGGGCSSCHHHHHHHHCSE-ECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEEeCCCCCcccHHHhHHhhCCe-EEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 999999977643321 12222332 22222210 001111222222111 0 123445
Q ss_pred HHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEec
Q 008235 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDK 490 (573)
Q Consensus 416 ~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~ 490 (573)
.+.+++....... ..++||||+ ...++.++..|...+..+.. +||+ +.++++.| ++|...++++++++
T Consensus 335 ~l~~~l~~~~~~~----~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~-~~g~~~~~~r~~i~~~f-~~g~~~vLv~T~~~ 407 (510)
T 2oca_A 335 WIAKLAIKLAQKD----ENAFVMFKH-VSHGKAIFDLIKNEYDKVYY-VSGEVDTETRNIMKTLA-ENGKGIIIVASYGV 407 (510)
T ss_dssp HHHHHHHHHHTTT----CEEEEEESS-HHHHHHHHHHHHTTCSSEEE-ESSSTTHHHHHHHHHHH-HHCCSCEEEEEHHH
T ss_pred HHHHHHHHHHhcC----CCeEEEEec-HHHHHHHHHHHHHcCCCeEE-EECCCCHHHHHHHHHHH-hCCCCCEEEEEcCh
Confidence 5666666665422 356666666 88899999999998887775 5765 44589999 89999988773266
Q ss_pred cccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEec
Q 008235 491 DHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFT 537 (573)
Q Consensus 491 ~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~ 537 (573)
.+ +|+|+|++++||++++|.+...|+||+||+||.|..|.++++++
T Consensus 408 ~~-~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 408 FS-TGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HH-HSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred hh-cccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 63 79999999999999999999999999999999998875555554
No 48
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=307.24 Aligned_cols=214 Identities=15% Similarity=0.189 Sum_probs=179.5
Q ss_pred cceEEccCCCCCC-CCCCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcC--CcEEEEeCCC
Q 008235 151 AEVHLNGKSCANG-HHGQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA--KDILETSGSS 227 (573)
Q Consensus 151 ~~i~~~g~~~~~~-~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g--~dvl~~A~TG 227 (573)
..+.+.+.+.+.| ....+|+++++++.+ + +++...||..| ||+|.++||.++.| +|++++||||
T Consensus 75 ~~v~v~~~~~~~p~~~~~~f~~l~l~~~l----~----~~l~~~g~~~p-----t~iQ~~ai~~il~~~~~~~l~~a~TG 141 (300)
T 3fmo_B 75 NQVEVLQRDPNSPLYSVKSFEELRLKPQL----L----QGVYAMGFNRP-----SKIQENALPLMLAEPPQNLIAQSQSG 141 (300)
T ss_dssp SCEEEECSSTTCCCCCCCCSGGGTCCHHH----H----HHHHHTTCCSC-----CHHHHHHHHHHTSSSCCCEEEECCTT
T ss_pred ccceeccCCCCCCcCCcCCHhhcCCCHHH----H----HHHHHcCCCCC-----CHHHHHHHHHHHcCCCCeEEEECCCC
Confidence 4455556555433 234667777777666 3 44566899999 99999999999998 9999999999
Q ss_pred chhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcC--CcEEEEeCCCCCHHHHHHHhhcC
Q 008235 228 STIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSC 305 (573)
Q Consensus 228 ~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~--~i~~~~~~gg~~~~~~~~~l~~~ 305 (573)
||||++|++|+++++.... .++++|||+|||+||.|+++.+..+... ++.+..++||....... ..
T Consensus 142 -sGKT~a~~lp~l~~l~~~~-------~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~- 209 (300)
T 3fmo_B 142 -TGKTAAFVLAMLSQVEPAN-------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KI- 209 (300)
T ss_dssp -SSHHHHHHHHHHHHCCTTS-------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CC-
T ss_pred -CCccHHHHHHHHHhhhccC-------CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cC-
Confidence 9999999999999886432 5789999999999999999999998543 78899999987754332 23
Q ss_pred CCcEEEeCHHHHHHHHHc-CCCCCCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHh
Q 008235 306 EPEFLVSTPERLLKLVSL-KAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL 380 (573)
Q Consensus 306 ~~~IlV~TP~rL~~~l~~-~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l 380 (573)
+++|+|||||+|++++.+ +.+.++++++|||||||+|++ ...+..|+..++.++|+++||||++..+..+++.++
T Consensus 210 ~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l 289 (300)
T 3fmo_B 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV 289 (300)
T ss_dssp CCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHS
T ss_pred CCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHC
Confidence 789999999999999976 667899999999999999985 677888999999999999999999999999999999
Q ss_pred cCCceEEEcC
Q 008235 381 LGSINRLSLN 390 (573)
Q Consensus 381 ~~~~~~i~~~ 390 (573)
.+|+ .|.+.
T Consensus 290 ~~p~-~i~~~ 298 (300)
T 3fmo_B 290 PDPN-VIKLK 298 (300)
T ss_dssp SSCE-EEEEC
T ss_pred CCCe-EEEec
Confidence 9996 67664
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.7e-37 Score=333.61 Aligned_cols=272 Identities=11% Similarity=0.011 Sum_probs=194.7
Q ss_pred HHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCC
Q 008235 212 KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHP 291 (573)
Q Consensus 212 p~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~g 291 (573)
..+..|+|++++|||| ||||++|++|+++.+.. .++++||++|||+||.|+++.+.. +.+....+
T Consensus 16 ~~l~~~~~vlv~a~TG-sGKT~~~~l~il~~~~~---------~~~~~lvl~Ptr~La~Q~~~~l~g-----~~v~~~~~ 80 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPG-SGKTRKILPQIIKDAIQ---------QRLRTAVLAPTRVVAAEMAEALRG-----LPVRYQTS 80 (459)
T ss_dssp GGGSTTCEEEECCCTT-SCTTTTHHHHHHHHHHH---------TTCCEEEEECSHHHHHHHHHHTTT-----SCEEECC-
T ss_pred HHHhcCCcEEEECCCC-CCHHHHHHHHHHHHHHh---------CCCcEEEECchHHHHHHHHHHhcC-----ceEeEEec
Confidence 3456679999999999 99999999999998864 367899999999999999998873 33322222
Q ss_pred CCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccc-----cCcchHHHHHHhcCCCCcEEEEec
Q 008235 292 GAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL-----SKGDTLSLIRQSISGKPHTVVFND 366 (573)
Q Consensus 292 g~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~l-----l~~~~l~~Il~~l~~~~q~l~~SA 366 (573)
..... ...+..+.+.|.+.+...+... ..++++++|||||||++ +....+..+. ..+++|+++|||
T Consensus 81 ~~~~~------~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~--~~~~~~~il~SA 151 (459)
T 2z83_A 81 AVQRE------HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV--ELGEAAAIFMTA 151 (459)
T ss_dssp -------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH--HTTSCEEEEECS
T ss_pred ccccC------CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh--ccCCccEEEEEc
Confidence 11110 1113457788999887666554 56889999999999984 2222222222 236899999999
Q ss_pred cCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhH
Q 008235 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKF 446 (573)
Q Consensus 367 T~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~ 446 (573)
|++..+..+... ..|+ +.+... ++. .+...+..+|... .+++||||+|+..|
T Consensus 152 T~~~~~~~~~~~--~~pi--~~~~~~--------------~~~--~~~~~~~~~l~~~--------~~~~LVF~~s~~~~ 203 (459)
T 2z83_A 152 TPPGTTDPFPDS--NAPI--HDLQDE--------------IPD--RAWSSGYEWITEY--------AGKTVWFVASVKMG 203 (459)
T ss_dssp SCTTCCCSSCCC--SSCE--EEEECC--------------CCS--SCCSSCCHHHHHC--------CSCEEEECSCHHHH
T ss_pred CCCcchhhhccC--CCCe--EEeccc--------------CCc--chhHHHHHHHHhc--------CCCEEEEeCChHHH
Confidence 999764332211 2232 111110 000 0001111233332 47999999999999
Q ss_pred HHHHHHHHHCCCCeeeecCCCHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEe--------------------
Q 008235 447 QNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIV-------------------- 506 (573)
Q Consensus 447 ~~l~~~L~~~g~~~~~~~~~~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~-------------------- 506 (573)
+.++..|...|+.+..++..++..+++.| ++|..++|++ ||++ .+|||||+ ++||+
T Consensus 204 ~~l~~~L~~~g~~v~~lh~~~R~~~~~~f-~~g~~~iLVa-T~v~-~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~ 279 (459)
T 2z83_A 204 NEIAMCLQRAGKKVIQLNRKSYDTEYPKC-KNGDWDFVIT-TDIS-EMGANFGA-SRVIDCRKSVKPTILEEGEGRVILG 279 (459)
T ss_dssp HHHHHHHHHTTCCEEEESTTCCCCCGGGS-SSCCCSEEEE-SSCC----CCCSC-SEEEECCEECCEEEECSSSCEEEEC
T ss_pred HHHHHHHHhcCCcEEecCHHHHHHHHhhc-cCCCceEEEE-CChH-HhCeecCC-CEEEECCcccccccccccccccccc
Confidence 99999999999999987555677789999 9999999887 6788 48999999 99999
Q ss_pred CCCCCCHHHHHHHHhccccCCC-cceEEEEeccc
Q 008235 507 PDFIISMKNYVEILTSMARHTV-SGILHSFFTKD 539 (573)
Q Consensus 507 ~d~P~s~~~YiqR~GR~gR~g~-~G~~i~~~~~~ 539 (573)
|++|.+..+|+||+|||||.|. .|.|++|+++.
T Consensus 280 ~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 280 NPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp SCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7899999999999999999997 99999999875
No 50
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=289.20 Aligned_cols=196 Identities=15% Similarity=0.232 Sum_probs=166.5
Q ss_pred HHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc
Q 008235 184 NAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (573)
Q Consensus 184 ~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~ 263 (573)
+.+.+++.+.||..| +|+|.++|+.+++|+|++++|||| ||||++|++|++..+....... ....++++|||+
T Consensus 29 ~~l~~~l~~~g~~~~-----~~~Q~~~i~~~~~~~~~l~~apTG-sGKT~~~~l~~~~~l~~~~~~~-~~~~~~~~lil~ 101 (228)
T 3iuy_A 29 PDLLKSIIRVGILKP-----TPIQSQAWPIILQGIDLIVVAQTG-TGKTLSYLMPGFIHLDSQPISR-EQRNGPGMLVLT 101 (228)
T ss_dssp HHHHHHHHHHTCCSC-----CHHHHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHHC----------CCCSEEEEC
T ss_pred HHHHHHHHHCCCCCC-----CHHHHHHHHHHhCCCCEEEECCCC-ChHHHHHHHHHHHHHHhccchh-hccCCCcEEEEe
Confidence 345566667899999 999999999999999999999999 9999999999999886542111 112578999999
Q ss_pred ccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCccccc
Q 008235 264 SSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343 (573)
Q Consensus 264 PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll 343 (573)
||++||.|+++.+..+...++.+.+++||.....+...+.. +++|+|+||++|.+++..+...++++++|||||||+++
T Consensus 102 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~ 180 (228)
T 3iuy_A 102 PTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISK-GVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKML 180 (228)
T ss_dssp SSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHS-CCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHh
Confidence 99999999999999997779999999999998888888877 79999999999999999988889999999999999998
Q ss_pred C---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEE
Q 008235 344 K---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLS 388 (573)
Q Consensus 344 ~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~ 388 (573)
+ ...+..|+..+++++|+++||||+|+.+..++..++.+|+ .|.
T Consensus 181 ~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~-~i~ 227 (228)
T 3iuy_A 181 DMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPM-IVY 227 (228)
T ss_dssp HTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCE-EEE
T ss_pred ccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCE-EEe
Confidence 7 7789999999999999999999999999999999999996 443
No 51
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.6e-35 Score=293.45 Aligned_cols=236 Identities=15% Similarity=0.199 Sum_probs=188.4
Q ss_pred cceEEccCCCCCCCCCCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchh
Q 008235 151 AEVHLNGKSCANGHHGQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTI 230 (573)
Q Consensus 151 ~~i~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SG 230 (573)
..+.+.|...|......+|+++++++.+ . +++...||..| +|+|.++|+.+++|+|++++|||| ||
T Consensus 7 ~~~~~~~~~~~~~~~~~~f~~l~l~~~l----~----~~l~~~g~~~~-----~~~Q~~~i~~i~~~~~~l~~a~TG-sG 72 (253)
T 1wrb_A 7 IPVSVTGPDYSATNVIENFDELKLDPTI----R----NNILLASYQRP-----TPIQKNAIPAILEHRDIMACAQTG-SG 72 (253)
T ss_dssp CCCCEECCSSSCCSCCCSSGGGSCCCST----T----TTTTTTTCCSC-----CHHHHHHHHHHHTTCCEEEECCTT-SS
T ss_pred CceeeeCCCCCCCCccCCHhhCCCCHHH----H----HHHHHCCCCCC-----CHHHHHHHHHHhCCCCEEEECCCC-Ch
Confidence 3455667777654446678888888776 3 34456899999 999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHhchhccC--CCCCCcEEEEEcccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCHHHHHHHhhcCCC
Q 008235 231 VQIAWIVATAADSIARKEKEG--FSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEP 307 (573)
Q Consensus 231 KTlaf~lp~l~~l~~~~~~~~--~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~ 307 (573)
||++|++|++.++........ ....++++|||+|||+|+.|+++.++.+.. .++.++.++||.....+...+.. ++
T Consensus 73 KT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~ 151 (253)
T 1wrb_A 73 KTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQM-GC 151 (253)
T ss_dssp HHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSS-CC
T ss_pred HHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCC-CC
Confidence 999999999998875431100 012467999999999999999999999844 58999999999998888888877 89
Q ss_pred cEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhc--CC--CCcEEEEeccCCccHHHHHHHHh
Q 008235 308 EFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSI--SG--KPHTVVFNDCLTYTSVPAVQNLL 380 (573)
Q Consensus 308 ~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l--~~--~~q~l~~SAT~~~~~~~~~~~~l 380 (573)
+|+|+||++|.+++..+.+.+.++++|||||||+|++ ...+..|+..+ +. ++|+++||||+++.+..+++.++
T Consensus 152 ~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l 231 (253)
T 1wrb_A 152 HLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFL 231 (253)
T ss_dssp SEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHC
T ss_pred CEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHc
Confidence 9999999999999999888899999999999999987 67888888854 43 78999999999999999999999
Q ss_pred cCCceEEEcCCCccccccceEEE
Q 008235 381 LGSINRLSLNQSVASQSACIIQS 403 (573)
Q Consensus 381 ~~~~~~i~~~~~~~~~~~~i~~~ 403 (573)
.+|+ .+.++.. .....+|+|.
T Consensus 232 ~~~~-~i~~~~~-~~~~~~i~q~ 252 (253)
T 1wrb_A 232 YNYI-FMTVGRV-GSTSDSIKQE 252 (253)
T ss_dssp SSCE-EEEEC-------------
T ss_pred CCCE-EEEECCC-CCCcCCceec
Confidence 9996 7777764 3455667665
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.6e-35 Score=314.13 Aligned_cols=267 Identities=8% Similarity=0.028 Sum_probs=189.5
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCH
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAI 295 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~ 295 (573)
.|+|+++++||| ||||++|++|+++.+.. .++++|||+||++||.|+++.+. ++.+....|+...
T Consensus 1 kg~~~lv~a~TG-sGKT~~~l~~~l~~~~~---------~g~~~lvl~Pt~~La~Q~~~~~~-----~~~v~~~~~~~~~ 65 (431)
T 2v6i_A 1 KRELTVLDLHPG-AGKTRRVLPQLVREAVK---------KRLRTVILAPTRVVASEMYEALR-----GEPIRYMTPAVQS 65 (431)
T ss_dssp -CCEEEEECCTT-SCTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTT-----TSCEEEC------
T ss_pred CCCEEEEEcCCC-CCHHHHHHHHHHHHHHh---------CCCCEEEECcHHHHHHHHHHHhC-----CCeEEEEecCccc
Confidence 378999999999 99999999999977754 36799999999999999998776 4445544444221
Q ss_pred HHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC--cchHHHHHHhc-CCCCcEEEEeccCCccH
Q 008235 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSI-SGKPHTVVFNDCLTYTS 372 (573)
Q Consensus 296 ~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l-~~~~q~l~~SAT~~~~~ 372 (573)
....+.-+.+.|.+.+...+.. ...+.++++|||||||++.. ...+..+.... +.++|+++||||+++.+
T Consensus 66 ------~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 66 ------ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp ---------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCC
T ss_pred ------cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcch
Confidence 1111355777899988766665 55689999999999999832 22333333332 56899999999999753
Q ss_pred HHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHH
Q 008235 373 VPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVST 452 (573)
Q Consensus 373 ~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~ 452 (573)
..+... ..|+ +.+.. .... .+...++..+.. . .+++||||+++..|+.++..
T Consensus 139 ~~~~~~--~~~i--~~~~~--------------~~~~--~~~~~~~~~l~~----~----~~~~lVF~~~~~~~~~l~~~ 190 (431)
T 2v6i_A 139 EAFPPS--NSPI--IDEET--------------RIPD--KAWNSGYEWITE----F----DGRTVWFVHSIKQGAEIGTC 190 (431)
T ss_dssp CSSCCC--SSCC--EEEEC--------------CCCS--SCCSSCCHHHHS----C----SSCEEEECSSHHHHHHHHHH
T ss_pred hhhcCC--CCce--eeccc--------------cCCH--HHHHHHHHHHHc----C----CCCEEEEeCCHHHHHHHHHH
Confidence 321110 1121 11110 0110 011111223322 1 46899999999999999999
Q ss_pred HHHCCCCeeeecCCCHHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCE-----------------EEeCCCCCCHHH
Q 008235 453 LKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEV-----------------VIVPDFIISMKN 515 (573)
Q Consensus 453 L~~~g~~~~~~~~~~~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~-----------------VI~~d~P~s~~~ 515 (573)
|...++.+..+|.+++.++++.| ++|+..+|++ ||+. .+|+|+| +.+ ||+|+.|.+..+
T Consensus 191 L~~~~~~v~~lhg~~r~~~~~~f-~~g~~~vLVa-T~v~-e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~ 266 (431)
T 2v6i_A 191 LQKAGKKVLYLNRKTFESEYPKC-KSEKWDFVIT-TDIS-EMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPAS 266 (431)
T ss_dssp HHHTTCCEEEESTTTHHHHTTHH-HHSCCSEEEE-CGGG-GTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHH
T ss_pred HHHcCCeEEEeCCccHHHHHHhh-cCCCCeEEEE-CchH-HcCcccC-CcEEEecCccccceecccceeecccccCCHHH
Confidence 99999999876555677899999 9999999888 6677 4899999 655 678899999999
Q ss_pred HHHHHhccccCCC-cceEEEEe
Q 008235 516 YVEILTSMARHTV-SGILHSFF 536 (573)
Q Consensus 516 YiqR~GR~gR~g~-~G~~i~~~ 536 (573)
|+||+||+||.|. .|.+++|.
T Consensus 267 ~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 267 AAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHHHTTSSCCTTCCCCEEEEC
T ss_pred HHHhhhccCCCCCCCCeEEEEc
Confidence 9999999999985 56666665
No 53
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4.8e-35 Score=331.66 Aligned_cols=328 Identities=9% Similarity=0.007 Sum_probs=227.8
Q ss_pred CccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcC-CcEEEEeCCCchhHHHHHHHHHHHHHHhc
Q 008235 168 ACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIAR 246 (573)
Q Consensus 168 ~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~ 246 (573)
.|+...+++.+ .+.+ ...+ ..| +++|+++|+.++.+ +++++++||| ||||+ ++|++......
T Consensus 73 ~f~~~~l~~~~----~~~l----~~r~-~lP-----~~~q~~~i~~~l~~~~~vii~gpTG-SGKTt--llp~ll~~~~~ 135 (773)
T 2xau_A 73 PFTGREFTPKY----VDIL----KIRR-ELP-----VHAQRDEFLKLYQNNQIMVFVGETG-SGKTT--QIPQFVLFDEM 135 (773)
T ss_dssp TTTCSBCCHHH----HHHH----HHHT-TSG-----GGGGHHHHHHHHHHCSEEEEECCTT-SSHHH--HHHHHHHHHHC
T ss_pred CccccCCCHHH----HHHH----HHhh-cCC-----hHHHHHHHHHHHhCCCeEEEECCCC-CCHHH--HHHHHHHHhcc
Confidence 36666666665 3333 3344 566 99999999988875 6799999999 99998 57776322211
Q ss_pred hhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCC
Q 008235 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI 326 (573)
Q Consensus 247 ~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~ 326 (573)
.. ..+.+++|++|||+||.|+.+.+.... ++.+...+|+..... ..... +.+|+|+|||+|.+++... .
T Consensus 136 ~~-----~~g~~ilvl~P~r~La~q~~~~l~~~~--~~~v~~~vG~~i~~~--~~~~~-~~~I~v~T~G~l~r~l~~~-~ 204 (773)
T 2xau_A 136 PH-----LENTQVACTQPRRVAAMSVAQRVAEEM--DVKLGEEVGYSIRFE--NKTSN-KTILKYMTDGMLLREAMED-H 204 (773)
T ss_dssp GG-----GGTCEEEEEESCHHHHHHHHHHHHHHT--TCCBTTTEEEEETTE--EECCT-TCSEEEEEHHHHHHHHHHS-T
T ss_pred cc-----CCCceEEecCchHHHHHHHHHHHHHHh--CCchhheecceeccc--cccCC-CCCEEEECHHHHHHHHhhC-c
Confidence 11 136789999999999999987665431 222222222110000 01112 6899999999999887664 4
Q ss_pred CCCCccEEEEeCccc-ccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceE
Q 008235 327 DVSGVSLLVVDRLDS-LSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACII 401 (573)
Q Consensus 327 ~l~~l~~lViDEad~-ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~ 401 (573)
.+.++++|||||||. +++ ...+..|... .++.|+++||||++. ..+. .++.++. .+.+.... ..+.
T Consensus 205 ~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~--~~l~-~~~~~~~-vi~v~gr~----~pv~ 275 (773)
T 2xau_A 205 DLSRYSCIILDEAHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDA--EKFQ-RYFNDAP-LLAVPGRT----YPVE 275 (773)
T ss_dssp TCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCC--HHHH-HHTTSCC-EEECCCCC----CCEE
T ss_pred cccCCCEEEecCccccccchHHHHHHHHHHHHh-CCCceEEEEeccccH--HHHH-HHhcCCC-cccccCcc----cceE
Confidence 589999999999995 666 3344444443 357899999999964 4444 4555443 45554321 2466
Q ss_pred EEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHH-----------CCCCeeeecCCCHH-
Q 008235 402 QSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC-----------KGYSISTGSNCIVS- 469 (573)
Q Consensus 402 ~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~-----------~g~~~~~~~~~~~~- 469 (573)
+.|..+. ..+....++..+..+..... .+++||||+++..++.++..|.. .++.+.. +||++.
T Consensus 276 ~~~~~~~-~~~~~~~~l~~l~~~~~~~~---~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~-lhg~l~~ 350 (773)
T 2xau_A 276 LYYTPEF-QRDYLDSAIRTVLQIHATEE---AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYP-LYGSLPP 350 (773)
T ss_dssp EECCSSC-CSCHHHHHHHHHHHHHHHSC---SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE-ECTTCCH
T ss_pred EEEecCC-chhHHHHHHHHHHHHHHhcC---CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEE-eCCCCCH
Confidence 6666554 33344333444444433323 57999999999999999999975 4666765 477543
Q ss_pred ----HHHHHHHh-----cCCCCCeEEEEeccccCCCccCCCCEEEeCCC------------------CCCHHHHHHHHhc
Q 008235 470 ----HIKNSVEA-----DGRKRPAVSMIDKDHISTAELEEYEVVIVPDF------------------IISMKNYVEILTS 522 (573)
Q Consensus 470 ----~~l~~F~~-----~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~------------------P~s~~~YiqR~GR 522 (573)
.+++.| + +|..++|++ ||++ .+|||||+|++||+|++ |.+..+|+||+||
T Consensus 351 ~eR~~v~~~f-~~~~~~~g~~kVlVA-T~ia-e~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GR 427 (773)
T 2xau_A 351 HQQQRIFEPA-PESHNGRPGRKVVIS-TNIA-ETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGR 427 (773)
T ss_dssp HHHGGGGSCC-CCCSSSSCCEEEEEE-CTHH-HHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHG
T ss_pred HHHHHHHhhc-ccccCCCCceEEEEe-CcHH-HhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccc
Confidence 367778 6 777777777 5777 47999999999999988 8999999999999
Q ss_pred cccCCCcceEEEEeccccH
Q 008235 523 MARHTVSGILHSFFTKDDA 541 (573)
Q Consensus 523 ~gR~g~~G~~i~~~~~~d~ 541 (573)
|||. ..|.|+.|+++.+.
T Consensus 428 aGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 428 AGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp GGSS-SSEEEEESSCHHHH
T ss_pred cCCC-CCCEEEEEecHHHh
Confidence 9998 89999999987655
No 54
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.1e-34 Score=313.53 Aligned_cols=290 Identities=13% Similarity=0.067 Sum_probs=209.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh
Q 008235 201 LFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~ 280 (573)
+.++|+|.++++.++.++++++++||| +|||++|++++... +.++||||||++|+.|+.+.+..|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TG-sGKT~~~l~~i~~~-------------~~~~Lvl~P~~~L~~Q~~~~~~~~- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTG-SGKTHVAMAAINEL-------------STPTLIVVPTLALAEQWKERLGIF- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTT-SCHHHHHHHHHHHH-------------CSCEEEEESSHHHHHHHHHHGGGG-
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCC-CCHHHHHHHHHHHc-------------CCCEEEEECCHHHHHHHHHHHHhC-
Confidence 456999999999999999999999999 99999999988753 347999999999999999999885
Q ss_pred cCCcE-EEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCCCC
Q 008235 281 AFGIH-TVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359 (573)
Q Consensus 281 ~~~i~-~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~ 359 (573)
++. +..++|+... .++|+|+||+.|...+.. ...++++|||||||++.. .....++..++ ..
T Consensus 157 --~~~~v~~~~g~~~~----------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~-~~~~~~~~~~~-~~ 219 (472)
T 2fwr_A 157 --GEEYVGEFSGRIKE----------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPA-ESYVQIAQMSI-AP 219 (472)
T ss_dssp --CGGGEEEBSSSCBC----------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTS-TTTHHHHHTCC-CS
T ss_pred --CCcceEEECCCcCC----------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCC-hHHHHHHHhcC-CC
Confidence 788 8888887642 579999999999876642 124589999999999986 33445666654 57
Q ss_pred cEEEEeccCCc-------------------cHHHHHHHHhcCCc-eEEEcCCCcc-----------------------cc
Q 008235 360 HTVVFNDCLTY-------------------TSVPAVQNLLLGSI-NRLSLNQSVA-----------------------SQ 396 (573)
Q Consensus 360 q~l~~SAT~~~-------------------~~~~~~~~~l~~~~-~~i~~~~~~~-----------------------~~ 396 (573)
+++++|||+.. ...++...++..+. ..+.+..... ..
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 89999999973 22333222222221 0111110000 00
Q ss_pred ccceEEEE---------------------EEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHH
Q 008235 397 SACIIQSV---------------------NVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC 455 (573)
Q Consensus 397 ~~~i~~~~---------------------~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~ 455 (573)
...+.+.+ +.+. ...|...|.++|.. .. +.++||||++...++.++..|.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~----~~---~~k~lvF~~~~~~~~~l~~~l~- 370 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFN-SKNKIRKLREILER----HR---KDKIIIFTRHNELVYRISKVFL- 370 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHS-CSHHHHHHHHHHHH----TS---SSCBCCBCSCHHHHHHHHHHTT-
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhc-ChHHHHHHHHHHHh----CC---CCcEEEEECCHHHHHHHHHHhC-
Confidence 00000000 0011 33566666666665 22 5799999999999999999884
Q ss_pred CCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCc-
Q 008235 456 KGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVS- 529 (573)
Q Consensus 456 ~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~- 529 (573)
+.+ +||+ +.++++.| ++|...+|++ +++.+ +|+|+|++++||+|++|.++..|+||+||+||.|..
T Consensus 371 --~~~---~~g~~~~~~R~~~~~~F-~~g~~~vLv~-T~~~~-~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k 442 (472)
T 2fwr_A 371 --IPA---ITHRTSREEREEILEGF-RTGRFRAIVS-SQVLD-EGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGK 442 (472)
T ss_dssp --CCB---CCSSSCSHHHHTHHHHH-HHSSCSBCBC-SSCCC-SSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTT
T ss_pred --cce---eeCCCCHHHHHHHHHHH-hCCCCCEEEE-cCchh-cCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCC
Confidence 222 3553 55689999 8899999876 46663 799999999999999999999999999999999954
Q ss_pred c--eEEEEeccc
Q 008235 530 G--ILHSFFTKD 539 (573)
Q Consensus 530 G--~~i~~~~~~ 539 (573)
+ .++.|++..
T Consensus 443 ~~~~i~~lv~~~ 454 (472)
T 2fwr_A 443 KEAVLYELISRG 454 (472)
T ss_dssp CCEEEEEEEECS
T ss_pred ceEEEEEEEeCC
Confidence 3 455566643
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=283.07 Aligned_cols=200 Identities=17% Similarity=0.239 Sum_probs=176.7
Q ss_pred CccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhch
Q 008235 168 ACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARK 247 (573)
Q Consensus 168 ~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~ 247 (573)
+|+++++++.+ .+++...||..| +|+|.++|+.+++|+|++++|||| ||||++|++|++..+....
T Consensus 44 ~f~~l~l~~~l--------~~~l~~~g~~~~-----~~~Q~~~i~~i~~~~~~lv~a~TG-sGKT~~~~~~il~~l~~~~ 109 (249)
T 3ber_A 44 TFKDLGVTDVL--------CEACDQLGWTKP-----TKIQIEAIPLALQGRDIIGLAETG-SGKTGAFALPILNALLETP 109 (249)
T ss_dssp CTGGGTCCHHH--------HHHHHHTTCCSC-----CHHHHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHHHHSC
T ss_pred CHHHcCCCHHH--------HHHHHHcCCCCC-----CHHHHHHHHHHhCCCCEEEEcCCC-CCchhHhHHHHHHHHhcCC
Confidence 36667666655 455567899999 999999999999999999999999 9999999999999887642
Q ss_pred hccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHc-CC
Q 008235 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL-KA 325 (573)
Q Consensus 248 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~-~~ 325 (573)
.++++|||+|||+|+.|+++.++.+.. .++++..++||.....+...+.. +++|+|+||++|++++.. +.
T Consensus 110 -------~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~~ 181 (249)
T 3ber_A 110 -------QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK-KPHIIIATPGRLIDHLENTKG 181 (249)
T ss_dssp -------CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHT-CCSEEEECHHHHHHHHHHSTT
T ss_pred -------CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcCCC
Confidence 467899999999999999999999844 58999999999998888777777 899999999999999986 56
Q ss_pred CCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcC
Q 008235 326 IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLN 390 (573)
Q Consensus 326 ~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~ 390 (573)
+.+.++++|||||||++++ ...+..|+..++.++|+++||||++..+.++++.++.+|+ .+.++
T Consensus 182 ~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~-~i~v~ 248 (249)
T 3ber_A 182 FNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPV-KCAVS 248 (249)
T ss_dssp CCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCE-EEECC
T ss_pred cCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCE-EEEec
Confidence 7789999999999999987 6788999999999999999999999999999999999996 66553
No 56
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=9.5e-35 Score=322.56 Aligned_cols=308 Identities=10% Similarity=0.013 Sum_probs=187.3
Q ss_pred CCCCHHHHHHHHHHhc----C-CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHH-H
Q 008235 201 LFVNSWGIEFWKCYSS----A-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR-S 274 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~----g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~-~ 274 (573)
+.++|+|.++++.++. | +++++++||| ||||+++ ++++..+............++++|||+||++|+.|+. +
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TG-sGKT~~~-~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATG-TGKTVVA-FQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTT-SCHHHHH-HHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCC-CChHHHH-HHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHH
Confidence 3469999999999876 5 6699999999 9999995 4555555543211111124789999999999999999 7
Q ss_pred HHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHc----CCCCCCCccEEEEeCcccccC--cchH
Q 008235 275 VCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL----KAIDVSGVSLLVVDRLDSLSK--GDTL 348 (573)
Q Consensus 275 ~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~----~~~~l~~l~~lViDEad~ll~--~~~l 348 (573)
.++.+ +..+..+.++. +.. +.+|+|+||++|..++.. ..+....+++|||||||++.. ...+
T Consensus 255 ~~~~~---~~~~~~~~~~~--------~~~-~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~ 322 (590)
T 3h1t_A 255 TFTPF---GDARHKIEGGK--------VVK-SREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNW 322 (590)
T ss_dssp CCTTT---CSSEEECCC----------CCS-SCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------C
T ss_pred HHHhc---chhhhhhhccC--------CCC-CCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHH
Confidence 77766 44445554432 222 689999999999887652 234567899999999999986 4778
Q ss_pred HHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCc--c-cccc--------------------------c
Q 008235 349 SLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSV--A-SQSA--------------------------C 399 (573)
Q Consensus 349 ~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~--~-~~~~--------------------------~ 399 (573)
..++..++ ..++++||||...........++..++..+.+.... . .... .
T Consensus 323 ~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
T 3h1t_A 323 REILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGRE 401 (590)
T ss_dssp HHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------------
T ss_pred HHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccc
Confidence 88888886 478999999987654433444455443222211100 0 0000 0
Q ss_pred eEEEEEEcCCh------hHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCC--------eeeecC
Q 008235 400 IIQSVNVCASD------EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS--------ISTGSN 465 (573)
Q Consensus 400 i~~~~~~~~~~------~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~--------~~~~~~ 465 (573)
+....+..... ..+...+...|..++.... ...++||||+++..|+.++..|...+.. +. .+|
T Consensus 402 ~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~--~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~-~i~ 478 (590)
T 3h1t_A 402 IPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTD--RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVA-RVT 478 (590)
T ss_dssp -------CCSHHHHHHHHHTHHHHHHHHHHHHHHHC--TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEE-ECS
T ss_pred cccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcC--CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEE-EEe
Confidence 00000000000 1223344444544443322 2579999999999999999999876542 33 356
Q ss_pred CC----HHHHHHHHHhcCCCC--CeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCC
Q 008235 466 CI----VSHIKNSVEADGRKR--PAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTV 528 (573)
Q Consensus 466 ~~----~~~~l~~F~~~g~~~--~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~ 528 (573)
|+ +.+++++| +++... ++++.+|+. .+|+|+|+|++||+|++|.+...|+||+||+||.+.
T Consensus 479 g~~~~~r~~~l~~F-~~~~~~~~~ilvtt~~l-~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 479 SEEGKIGKGHLSRF-QELETSTPVILTTSQLL-TTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp STTHHHHHHHHHHH-HCTTCCCCCEEEESSTT-TTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred CCChHHHHHHHHHH-hCCCCCCCEEEEECChh-hcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 64 45589999 887654 333324666 389999999999999999999999999999999874
No 57
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.6e-34 Score=272.47 Aligned_cols=195 Identities=17% Similarity=0.221 Sum_probs=173.7
Q ss_pred CccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhch
Q 008235 168 ACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARK 247 (573)
Q Consensus 168 ~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~ 247 (573)
+|+++++++.+ .+++.+.||..| +|+|.++++.+++|+|++++|||| ||||++|++|++..+....
T Consensus 4 ~f~~~~l~~~l--------~~~l~~~g~~~~-----~~~Q~~~i~~~~~~~~~lv~apTG-sGKT~~~~~~~~~~~~~~~ 69 (206)
T 1vec_A 4 EFEDYCLKREL--------LMGIFEMGWEKP-----SPIQEESIPIALSGRDILARAKNG-TGKSGAYLIPLLERLDLKK 69 (206)
T ss_dssp SGGGSCCCHHH--------HHHHHTTTCCSC-----CHHHHHHHHHHHTTCCEEEECCSS-STTHHHHHHHHHHHCCTTS
T ss_pred ChhhcCCCHHH--------HHHHHHCCCCCC-----CHHHHHHHHHHccCCCEEEECCCC-CchHHHHHHHHHHHhcccC
Confidence 36667666655 455567899999 999999999999999999999999 9999999999998875432
Q ss_pred hccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-C-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC
Q 008235 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-F-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA 325 (573)
Q Consensus 248 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~ 325 (573)
.++++||++||++|+.|+++.+..+.. . ++.+..++||.....+...+.. +++|+|+||++|.+++..+.
T Consensus 70 -------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 70 -------DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDD-TVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp -------CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTS-CCSEEEECHHHHHHHHHTTC
T ss_pred -------CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCC-CCCEEEeCHHHHHHHHHcCC
Confidence 467899999999999999999999843 4 7899999999998888777776 89999999999999999888
Q ss_pred CCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCc
Q 008235 326 IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSI 384 (573)
Q Consensus 326 ~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~ 384 (573)
..+.++++|||||||++++ ...+..++..++.+.|+++||||+|..+.++++.++.+|+
T Consensus 142 ~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~ 203 (206)
T 1vec_A 142 AKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPY 203 (206)
T ss_dssp SCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred cCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCe
Confidence 8899999999999999987 6788899999998999999999999999999999999995
No 58
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.3e-34 Score=282.28 Aligned_cols=203 Identities=14% Similarity=0.227 Sum_probs=165.9
Q ss_pred CCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHh
Q 008235 166 GQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIA 245 (573)
Q Consensus 166 ~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~ 245 (573)
..+|+++++++.+ . +++...||..| +|+|.++|+.+++|+|++++|||| ||||++|++|++..+..
T Consensus 29 ~~~f~~l~l~~~l----~----~~l~~~g~~~~-----~~~Q~~ai~~i~~~~~~li~apTG-sGKT~~~~l~~l~~l~~ 94 (237)
T 3bor_A 29 VDNFDDMNLKESL----L----RGIYAYGFEKP-----SAIQQRAIIPCIKGYDVIAQAQSG-TGKTATFAISILQQLEI 94 (237)
T ss_dssp CCSGGGSCCCHHH----H----HHHHHHTCCSC-----CHHHHHHHHHHHTTCCEEECCCSS-HHHHHHHHHHHHHHCCT
T ss_pred cCChhhcCCCHHH----H----HHHHHCCCCCC-----CHHHHHHHHHHhCCCCEEEECCCC-CcHHHHHHHHHHHHHHh
Confidence 3457777777666 3 34456799999 999999999999999999999999 99999999999988754
Q ss_pred chhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC
Q 008235 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK 324 (573)
Q Consensus 246 ~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~ 324 (573)
.. .++++|||+||++|+.|+++.++.+.. .++.+..++||.....+...+..+.++|+|+||++|++++..+
T Consensus 95 ~~-------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~ 167 (237)
T 3bor_A 95 EF-------KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR 167 (237)
T ss_dssp TS-------CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTT
T ss_pred cC-------CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC
Confidence 31 467899999999999999999999843 5889999999998888877777745999999999999999998
Q ss_pred CCCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcC
Q 008235 325 AIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLN 390 (573)
Q Consensus 325 ~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~ 390 (573)
.+.+.++++|||||||++++ ...+..|+..++..+|+++||||+|+.+.++++.++.+|+ .|.++
T Consensus 168 ~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~-~i~v~ 235 (237)
T 3bor_A 168 YLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPI-RILVK 235 (237)
T ss_dssp SSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCE-EEC--
T ss_pred CcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCE-EEEec
Confidence 88899999999999999986 6778899999999999999999999999999999999996 66554
No 59
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.4e-34 Score=278.61 Aligned_cols=201 Identities=13% Similarity=0.159 Sum_probs=175.1
Q ss_pred CccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhch
Q 008235 168 ACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARK 247 (573)
Q Consensus 168 ~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~ 247 (573)
+|+++++++.+ .+++.+.||..| +|+|.++++.+++|+|++++|||| ||||++|++|++..+....
T Consensus 5 ~f~~~~l~~~l--------~~~l~~~g~~~~-----~~~Q~~~i~~~~~~~~~lv~a~TG-sGKT~~~~~~~l~~l~~~~ 70 (219)
T 1q0u_A 5 QFTRFPFQPFI--------IEAIKTLRFYKP-----TEIQERIIPGALRGESMVGQSQTG-TGKTHAYLLPIMEKIKPER 70 (219)
T ss_dssp CGGGSCCCHHH--------HHHHHHTTCCSC-----CHHHHHHHHHHHHTCCEEEECCSS-HHHHHHHHHHHHHHCCTTS
T ss_pred CHhhCCCCHHH--------HHHHHHCCCCCC-----CHHHHHHHHHHhCCCCEEEECCCC-ChHHHHHHHHHHHHHHhCc
Confidence 36666666655 455567899999 999999999999999999999999 9999999999998876432
Q ss_pred hccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-C----CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHH
Q 008235 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-F----GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVS 322 (573)
Q Consensus 248 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~----~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~ 322 (573)
.++++|||+||++|+.|+++.++.+.. . ++.+..++||.+...+...+.. +++|+|+||++|.+++.
T Consensus 71 -------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~ 142 (219)
T 1q0u_A 71 -------AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNV-QPHIVIGTPGRINDFIR 142 (219)
T ss_dssp -------CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSS-CCSEEEECHHHHHHHHH
T ss_pred -------CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCC-CCCEEEeCHHHHHHHHH
Confidence 467999999999999999999998743 3 7889999999887776666665 79999999999999999
Q ss_pred cCCCCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCC
Q 008235 323 LKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQ 391 (573)
Q Consensus 323 ~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~ 391 (573)
.+.+.+.++++|||||||++.+ ...+..|+..++.++|+++||||+|..+.++++.++.+|. .+.+..
T Consensus 143 ~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~-~~~~~~ 213 (219)
T 1q0u_A 143 EQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPT-FVHVLE 213 (219)
T ss_dssp TTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCE-EEECC-
T ss_pred cCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCe-EEEeec
Confidence 8888899999999999999986 6788899999999999999999999999999999999996 666654
No 60
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.3e-34 Score=285.48 Aligned_cols=192 Identities=16% Similarity=0.154 Sum_probs=171.6
Q ss_pred HHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE
Q 008235 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (573)
Q Consensus 183 ~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil 262 (573)
.+.+.+++...||..| +|+|.++++.++.|+|++++|||| ||||++|++|+++.+....... ..++++|||
T Consensus 62 ~~~l~~~l~~~g~~~~-----~~~Q~~~i~~~~~~~~~lv~a~TG-sGKT~~~~l~~l~~l~~~~~~~---~~~~~~lil 132 (262)
T 3ly5_A 62 NENTLKAIKEMGFTNM-----TEIQHKSIRPLLEGRDLLAAAKTG-SGKTLAFLIPAVELIVKLRFMP---RNGTGVLIL 132 (262)
T ss_dssp CHHHHHHHHHTTCCBC-----CHHHHHHHHHHHHTCCCEECCCTT-SCHHHHHHHHHHHHHHHTTCCG---GGCCCEEEE
T ss_pred CHHHHHHHHHCCCCCC-----CHHHHHHHHHHhCCCcEEEEccCC-CCchHHHHHHHHHHHHhccccc---cCCceEEEE
Confidence 5566677788999999 999999999999999999999999 9999999999999987643221 147889999
Q ss_pred cccHHHHHHHHHHHhhh-hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC-CCCCCCccEEEEeCcc
Q 008235 263 VSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK-AIDVSGVSLLVVDRLD 340 (573)
Q Consensus 263 ~PtreLa~Qi~~~~~~l-~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~-~~~l~~l~~lViDEad 340 (573)
+|||+||.|+++.++.+ ...++.+..++||.....+...+.. +++|+|+|||+|.+++... .+.+.++++|||||||
T Consensus 133 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 133 SPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN-GINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp CSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH-CCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred eCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC-CCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 99999999999999997 4468999999999999888888887 7999999999999998875 4778999999999999
Q ss_pred cccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCc
Q 008235 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSI 384 (573)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~ 384 (573)
+|++ ...+..|+..++..+|+++||||+++.+..+++.+++.+.
T Consensus 212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 9987 7889999999999999999999999999999999998764
No 61
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=282.66 Aligned_cols=220 Identities=18% Similarity=0.247 Sum_probs=177.5
Q ss_pred cccceEEccCCCCCCCCCCCcccc----CCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEe
Q 008235 149 ERAEVHLNGKSCANGHHGQACEKL----DCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS 224 (573)
Q Consensus 149 ~~~~i~~~g~~~~~~~~~~~~~~~----~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A 224 (573)
...++.+.|.+.|.| ..+|++. +++ +.+.+++.+.||..| +|+|.++|+.+++|+|++++|
T Consensus 9 ~~~~i~~~~~~~p~~--~~~f~~l~~~~~l~--------~~l~~~l~~~g~~~~-----~~~Q~~~i~~~~~~~~~l~~a 73 (245)
T 3dkp_A 9 NKHKIHVQGTDLPDP--IATFQQLDQEYKIN--------SRLLQNILDAGFQMP-----TPIQMQAIPVMLHGRELLASA 73 (245)
T ss_dssp HHTTEEEESSSCCCC--CSSHHHHHHHHCCC--------HHHHHHHHHTTCCSC-----CHHHHHHHHHHHTTCCEEEEC
T ss_pred HhCceEecCCCCCCc--ccCHHHhhhccCCC--------HHHHHHHHHCCCCCC-----CHHHHHHHHHHhCCCCEEEEC
Confidence 356778888877765 3334443 333 344566677899999 999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcCCcEEEEeCCCCCHHHHHHHhh
Q 008235 225 GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLR 303 (573)
Q Consensus 225 ~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~~i~~~~~~gg~~~~~~~~~l~ 303 (573)
||| ||||++|++|++..+.... ..++++|||+||++|+.|+++.+..+ ...++.+..++||...........
T Consensus 74 ~TG-sGKT~~~~l~~l~~l~~~~------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (245)
T 3dkp_A 74 PTG-SGKTLAFSIPILMQLKQPA------NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKS 146 (245)
T ss_dssp CTT-SCHHHHHHHHHHHHHCSCC------SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTS
T ss_pred CCC-CcHHHHHHHHHHHHHhhcc------cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhh
Confidence 999 9999999999998885421 24779999999999999999999997 445888888887755443333333
Q ss_pred cCCCcEEEeCHHHHHHHHHcC--CCCCCCccEEEEeCcccccC------cchHHHHHHhc-CCCCcEEEEeccCCccHHH
Q 008235 304 SCEPEFLVSTPERLLKLVSLK--AIDVSGVSLLVVDRLDSLSK------GDTLSLIRQSI-SGKPHTVVFNDCLTYTSVP 374 (573)
Q Consensus 304 ~~~~~IlV~TP~rL~~~l~~~--~~~l~~l~~lViDEad~ll~------~~~l~~Il~~l-~~~~q~l~~SAT~~~~~~~ 374 (573)
..+++|+|+||++|.+++... .+.+.++++|||||||+|++ ...+..++..+ +.+.|+++||||+|..+..
T Consensus 147 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~ 226 (245)
T 3dkp_A 147 SKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQ 226 (245)
T ss_dssp CCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHH
T ss_pred cCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHH
Confidence 347999999999999999886 47789999999999999975 45666666665 4678999999999999999
Q ss_pred HHHHHhcCCceEEEcCC
Q 008235 375 AVQNLLLGSINRLSLNQ 391 (573)
Q Consensus 375 ~~~~~l~~~~~~i~~~~ 391 (573)
+++.++.+|+ .+.++.
T Consensus 227 ~~~~~l~~p~-~i~~~~ 242 (245)
T 3dkp_A 227 WCKLNLDNVI-SVSIGA 242 (245)
T ss_dssp HHHHHSSSCE-EEEECC
T ss_pred HHHHhCCCCE-EEEeCC
Confidence 9999999996 777765
No 62
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=8.5e-34 Score=276.97 Aligned_cols=200 Identities=16% Similarity=0.230 Sum_probs=173.4
Q ss_pred CCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHh
Q 008235 166 GQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIA 245 (573)
Q Consensus 166 ~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~ 245 (573)
...|+++++++.+ .+++...||..| +|+|.++|+.+++|+|++++|||| ||||++|++|++..+..
T Consensus 23 ~~~f~~l~l~~~l--------~~~l~~~g~~~~-----~~~Q~~~i~~~~~~~~~l~~a~TG-sGKT~~~~l~~l~~l~~ 88 (230)
T 2oxc_A 23 PADFESLLLSRPV--------LEGLRAAGFERP-----SPVQLKAIPLGRCGLDLIVQAKSG-TGKTCVFSTIALDSLVL 88 (230)
T ss_dssp -CCGGGGTCCHHH--------HHHHHHTTCCSC-----CHHHHHHHHHHHTTCCEEEECCTT-SSHHHHHHHHHHHHCCT
T ss_pred CCCHhhcCCCHHH--------HHHHHHCCCCCC-----CHHHHHHHHHHhCCCCEEEECCCC-CcHHHHHHHHHHHHHHh
Confidence 3457777666655 445566899999 999999999999999999999999 99999999999988764
Q ss_pred chhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-C-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHc
Q 008235 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-F-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL 323 (573)
Q Consensus 246 ~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~ 323 (573)
.. .++++|||+||++|+.|+++.++.+.. . ++++..++||.....+...+. +++|+|+||++|.+++..
T Consensus 89 ~~-------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~Iiv~Tp~~l~~~~~~ 159 (230)
T 2oxc_A 89 EN-------LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK--KCHIAVGSPGRIKQLIEL 159 (230)
T ss_dssp TS-------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT--SCSEEEECHHHHHHHHHT
T ss_pred cC-------CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc--CCCEEEECHHHHHHHHhc
Confidence 32 467999999999999999999999843 3 899999999998877766664 589999999999999998
Q ss_pred CCCCCCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEc
Q 008235 324 KAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSL 389 (573)
Q Consensus 324 ~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~ 389 (573)
+.+.+.++++|||||||++++ ...+..|+..++..+|+++||||++..+.+++..++.+|+ ++.+
T Consensus 160 ~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~-~i~~ 228 (230)
T 2oxc_A 160 DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPT-FVRL 228 (230)
T ss_dssp TSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCE-EECC
T ss_pred CCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCe-EEEc
Confidence 888899999999999999976 5678889999998999999999999999999999999996 5554
No 63
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.1e-33 Score=270.81 Aligned_cols=199 Identities=15% Similarity=0.201 Sum_probs=173.5
Q ss_pred CccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhch
Q 008235 168 ACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARK 247 (573)
Q Consensus 168 ~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~ 247 (573)
.|+++++++.+ .+++...||..| +|+|.++++.+++|+|++++|||| ||||++|++|++..+....
T Consensus 15 ~f~~~~l~~~l--------~~~l~~~g~~~~-----~~~Q~~~i~~~~~~~~~li~~~TG-sGKT~~~~~~~~~~~~~~~ 80 (220)
T 1t6n_A 15 GFRDFLLKPEL--------LRAIVDCGFEHP-----SEVQHECIPQAILGMDVLCQAKSG-MGKTAVFVLATLQQLEPVT 80 (220)
T ss_dssp CSTTSCCCHHH--------HHHHHHTTCCCC-----CHHHHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHCCCCT
T ss_pred CHhhcCCCHHH--------HHHHHHCCCCCC-----CHHHHHHHHHHhCCCCEEEECCCC-CchhhhhhHHHHHhhhccC
Confidence 46666666665 344556899999 999999999999999999999999 9999999999998775321
Q ss_pred hccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-C-CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC
Q 008235 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-F-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA 325 (573)
Q Consensus 248 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~-~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~ 325 (573)
.++++|||+||++|+.|+++.++.+.. . ++++..++||.....+...+..+.++|+|+||++|.+++..+.
T Consensus 81 -------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~ 153 (220)
T 1t6n_A 81 -------GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS 153 (220)
T ss_dssp -------TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS
T ss_pred -------CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC
Confidence 357899999999999999999999844 3 8999999999998888877776568999999999999999888
Q ss_pred CCCCCccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEE
Q 008235 326 IDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLS 388 (573)
Q Consensus 326 ~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~ 388 (573)
+.+.++++|||||||++++ ...+..++..++.++|+++||||++..+.++++.++.+|+ .|.
T Consensus 154 ~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~-~i~ 219 (220)
T 1t6n_A 154 LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM-EIF 219 (220)
T ss_dssp SCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCE-EEE
T ss_pred CCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCe-EEe
Confidence 8899999999999999986 5678888888888999999999999999999999999996 443
No 64
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=274.38 Aligned_cols=205 Identities=15% Similarity=0.183 Sum_probs=174.0
Q ss_pred CCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhc
Q 008235 167 QACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIAR 246 (573)
Q Consensus 167 ~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~ 246 (573)
..|+++++++.+ .+++...||..| +|+|.++++.+++|+|++++|||| ||||++|++|++..+...
T Consensus 25 ~~f~~~~l~~~l--------~~~l~~~~~~~~-----~~~Q~~~i~~~~~~~~~li~a~TG-sGKT~~~~~~~l~~l~~~ 90 (236)
T 2pl3_A 25 TRFSDFPLSKKT--------LKGLQEAQYRLV-----TEIQKQTIGLALQGKDVLGAAKTG-SGKTLAFLVPVLEALYRL 90 (236)
T ss_dssp SBGGGSCCCHHH--------HHHHHHTTCCBC-----CHHHHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHHHHT
T ss_pred CCHhhcCCCHHH--------HHHHHHCCCCCC-----CHHHHHHHHHHhCCCCEEEEeCCC-CcHHHHHHHHHHHHHHhh
Confidence 346667666665 344566899999 999999999999999999999999 999999999999988764
Q ss_pred hhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC-
Q 008235 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK- 324 (573)
Q Consensus 247 ~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~- 324 (573)
.... ..++++|||+||++|+.|+++.++.+. ..++.+..++||.....+...+. +++|+|+||++|.+++...
T Consensus 91 ~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~iiv~Tp~~l~~~l~~~~ 165 (236)
T 2pl3_A 91 QWTS---TDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN--NINILVCTPGRLLQHMDETV 165 (236)
T ss_dssp TCCG---GGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHT--TCSEEEECHHHHHHHHHHCS
T ss_pred cccc---cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCC--CCCEEEECHHHHHHHHHhcC
Confidence 3211 147899999999999999999999984 45799999999998877766664 6899999999999998775
Q ss_pred CCCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCC
Q 008235 325 AIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQ 391 (573)
Q Consensus 325 ~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~ 391 (573)
.+.+.++++|||||||++++ ...+..++..++.++|+++||||+++.+..+++.++.+|. ++.++.
T Consensus 166 ~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~-~i~~~~ 234 (236)
T 2pl3_A 166 SFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPE-YVWVHE 234 (236)
T ss_dssp SCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCE-EEECCC
T ss_pred CcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCE-EEEeCC
Confidence 57789999999999999987 6788999999999999999999999999999999999996 676653
No 65
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=2.5e-33 Score=268.50 Aligned_cols=200 Identities=17% Similarity=0.225 Sum_probs=174.4
Q ss_pred ccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchh
Q 008235 169 CEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKE 248 (573)
Q Consensus 169 ~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~ 248 (573)
|+++++++.+ .+++.+.||..| +|+|.++++.+++|+|+++++||| ||||++|++|++..+.....
T Consensus 3 f~~~~l~~~l--------~~~l~~~~~~~~-----~~~Q~~~i~~~~~~~~~li~~~TG-sGKT~~~~~~~~~~l~~~~~ 68 (207)
T 2gxq_A 3 FKDFPLKPEI--------LEALHGRGLTTP-----TPIQAAALPLALEGKDLIGQARTG-TGKTLAFALPIAERLAPSQE 68 (207)
T ss_dssp GGGSCCCHHH--------HHHHHHTTCCSC-----CHHHHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHCCCCCC
T ss_pred hhhcCCCHHH--------HHHHHHcCCCCC-----CHHHHHHHHHHcCCCCEEEECCCC-ChHHHHHHHHHHHHHhhccc
Confidence 6666666665 345566899999 999999999999999999999999 99999999999998864321
Q ss_pred ccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCC
Q 008235 249 KEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDV 328 (573)
Q Consensus 249 ~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l 328 (573)
. ..++++||++||++|+.|+++.+..+.. ++++..++||.....+...+.. +++|+|+||++|.+++..+.+.+
T Consensus 69 ~----~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~ 142 (207)
T 2gxq_A 69 R----GRKPRALVLTPTRELALQVASELTAVAP-HLKVVAVYGGTGYGKQKEALLR-GADAVVATPGRALDYLRQGVLDL 142 (207)
T ss_dssp T----TCCCSEEEECSSHHHHHHHHHHHHHHCT-TSCEEEECSSSCSHHHHHHHHH-CCSEEEECHHHHHHHHHHTSSCC
T ss_pred c----CCCCcEEEEECCHHHHHHHHHHHHHHhh-cceEEEEECCCChHHHHHHhhC-CCCEEEECHHHHHHHHHcCCcch
Confidence 1 2478999999999999999999998843 3788899999988877777777 79999999999999999988889
Q ss_pred CCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEc
Q 008235 329 SGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSL 389 (573)
Q Consensus 329 ~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~ 389 (573)
.++++|||||||++++ ...+..++..++.++|+++||||+++.+.++++.++.+|. .+.+
T Consensus 143 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~-~i~~ 205 (207)
T 2gxq_A 143 SRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPV-LINV 205 (207)
T ss_dssp TTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCE-EEEC
T ss_pred hhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCe-EEEc
Confidence 9999999999999976 6788899999999999999999999999999999999996 5654
No 66
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=6.6e-33 Score=269.18 Aligned_cols=202 Identities=14% Similarity=0.233 Sum_probs=166.3
Q ss_pred CCCccccCCChHHHHHhHHHHHHHHHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHh
Q 008235 166 GQACEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIA 245 (573)
Q Consensus 166 ~~~~~~~~~p~~~~~~~~~~i~~~l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~ 245 (573)
...|+++++++.+ . +.+...||..| +|+|.++++.+++|+|+++++||| ||||++|++|++..+..
T Consensus 13 ~~~f~~l~l~~~l----~----~~l~~~g~~~~-----~~~Q~~~i~~~~~~~~~lv~~pTG-sGKT~~~~~~~l~~l~~ 78 (224)
T 1qde_A 13 VYKFDDMELDENL----L----RGVFGYGFEEP-----SAIQQRAIMPIIEGHDVLAQAQSG-TGKTGTFSIAALQRIDT 78 (224)
T ss_dssp CCCGGGGTCCHHH----H----HHHHHHTCCSC-----CHHHHHHHHHHHTTCCEEEECCTT-SSHHHHHHHHHHHHCCT
T ss_pred cCChhhcCCCHHH----H----HHHHHCCCCCC-----cHHHHHHHHHHhcCCCEEEECCCC-CcHHHHHHHHHHHHHhc
Confidence 3457777766665 3 44456799998 999999999999999999999999 99999999999988754
Q ss_pred chhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh-cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC
Q 008235 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK 324 (573)
Q Consensus 246 ~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~-~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~ 324 (573)
.. .++++||++||++|+.|+++.+..+. ..++++..++||.....+...+.. ++|+|+||++|++++..+
T Consensus 79 ~~-------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~iiv~Tp~~l~~~~~~~ 149 (224)
T 1qde_A 79 SV-------KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD--AQIVVGTPGRVFDNIQRR 149 (224)
T ss_dssp TC-------CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT--CSEEEECHHHHHHHHHTT
T ss_pred cC-------CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC--CCEEEECHHHHHHHHHhC
Confidence 32 47799999999999999999999984 458999999999887777666653 899999999999999998
Q ss_pred CCCCCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCC
Q 008235 325 AIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQ 391 (573)
Q Consensus 325 ~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~ 391 (573)
...+.++++|||||||++++ ...+..++..++++.|+++||||+++.+.++++.++.+|+ .+.+..
T Consensus 150 ~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~-~i~~~~ 218 (224)
T 1qde_A 150 RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV-RILVKK 218 (224)
T ss_dssp SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCE-EEC---
T ss_pred CcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCE-EEEecC
Confidence 88899999999999999887 6678899999999999999999999999999999999996 666654
No 67
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=2.3e-30 Score=280.43 Aligned_cols=321 Identities=12% Similarity=-0.002 Sum_probs=230.7
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcC
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~ 282 (573)
+++|....-.+..|+ |+...|| +||||++.+|++-..+ .|..+.|++||++||.|-.+++..+ ..+
T Consensus 77 ~dvQligg~~L~~G~--iaEM~TG-EGKTLva~lp~~lnAL----------~G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 77 FDVQVMGGIALHEGK--VAEMKTG-EGKTLAATMPIYLNAL----------IGKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp CHHHHHHHHHHHTTC--EEECCTT-SCHHHHTHHHHHHHHT----------TSSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhCCC--hhhccCC-CCccHHHHHHHHHHHh----------cCCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 999999999999998 8889999 9999999999985443 3668999999999999999999997 557
Q ss_pred CcEEEEeCCC--------------------------------------------------CCHHHHHHHhhcCCCcEEEe
Q 008235 283 GIHTVSLHPG--------------------------------------------------AAIDHQITGLRSCEPEFLVS 312 (573)
Q Consensus 283 ~i~~~~~~gg--------------------------------------------------~~~~~~~~~l~~~~~~IlV~ 312 (573)
|+++++++.. .+... .+.. +.+||+.+
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e-rr~a--Y~~DItYg 220 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT-RKEA--YLCDVTYG 220 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC-HHHH--HHSSEEEE
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH-HHHH--hcCCCEEc
Confidence 9999998872 11111 1111 25899999
Q ss_pred CHHHH-HHHHHcC------CCCCCCccEEEEeCcccccC-------------------cchHHHHHHhcC----------
Q 008235 313 TPERL-LKLVSLK------AIDVSGVSLLVVDRLDSLSK-------------------GDTLSLIRQSIS---------- 356 (573)
Q Consensus 313 TP~rL-~~~l~~~------~~~l~~l~~lViDEad~ll~-------------------~~~l~~Il~~l~---------- 356 (573)
|..-+ .|.|+.+ ....+.+.+.||||+|.+|= +..+..+...+.
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek 300 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEK 300 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCS
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcc
Confidence 99876 4566543 23357799999999996532 011111111110
Q ss_pred ----------------------------------------------CC--------------------------------
Q 008235 357 ----------------------------------------------GK-------------------------------- 358 (573)
Q Consensus 357 ----------------------------------------------~~-------------------------------- 358 (573)
.+
T Consensus 301 ~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQ 380 (822)
T 3jux_A 301 ARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQ 380 (822)
T ss_dssp SSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHH
T ss_pred cCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHH
Confidence 00
Q ss_pred -----------------------------CcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEE-EEEcC
Q 008235 359 -----------------------------PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQS-VNVCA 408 (573)
Q Consensus 359 -----------------------------~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~-~~~~~ 408 (573)
..+.+||+|+.....++...|- -. ++.+... .+...+.+. ++.+
T Consensus 381 aiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~-l~--vv~IPtn--kp~~R~d~~d~vy~- 454 (822)
T 3jux_A 381 AIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG-ME--VVVIPTH--KPMIRKDHDDLVFR- 454 (822)
T ss_dssp HHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC-CC--EEECCCS--SCCCCEECCCEEES-
T ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC-Ce--EEEECCC--CCcceeecCcEEEe-
Confidence 2467899999887777665553 22 4455432 333344442 3444
Q ss_pred ChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHHH---HHHHHhcCCCCCeE
Q 008235 409 SDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHI---KNSVEADGRKRPAV 485 (573)
Q Consensus 409 ~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~---l~~F~~~g~~~~l~ 485 (573)
+...|+..+...+...... +.++||||+|+..++.|+..|...|+++.++ ||+..+. +-.+ ......+++
T Consensus 455 t~~eK~~al~~~I~~~~~~-----gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vL-hgkq~~rE~~ii~~-ag~~g~VtV 527 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKK-----GQPVLVGTTSIEKSELLSSMLKKKGIPHQVL-NAKYHEKEAEIVAK-AGQKGMVTI 527 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHH-----TCCEEEEESSHHHHHHHHHHHHTTTCCCEEE-CSCHHHHHHHHHHH-HHSTTCEEE
T ss_pred cHHHHHHHHHHHHHHHhhC-----CCCEEEEECCHHHHHHHHHHHHHCCCCEEEe-eCCchHHHHHHHHh-CCCCCeEEE
Confidence 4788999988888775433 4599999999999999999999999999875 7765442 2222 222334555
Q ss_pred EEEeccccCCCccC--------CCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHH----HHHHHHHHH
Q 008235 486 SMIDKDHISTAELE--------EYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHA----GQMIEILEQ 553 (573)
Q Consensus 486 ~lvd~~s~rGlDip--------~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~----~~l~~~l~~ 553 (573)
+ ||++ +||+||+ ++.+||||++|.+...|+||+|||||.|.+|.+++|++.+|..+- ..+..++..
T Consensus 528 A-TdmA-gRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~ 605 (822)
T 3jux_A 528 A-TNMA-GRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNI 605 (822)
T ss_dssp E-ETTT-TTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHH
T ss_pred E-cchh-hCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHH
Confidence 5 7999 5999998 667999999999999999999999999999999999998874321 344445554
Q ss_pred cC
Q 008235 554 CG 555 (573)
Q Consensus 554 ~~ 555 (573)
.+
T Consensus 606 ~~ 607 (822)
T 3jux_A 606 LK 607 (822)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 68
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.98 E-value=1.6e-31 Score=308.60 Aligned_cols=316 Identities=9% Similarity=0.032 Sum_probs=218.0
Q ss_pred CCCHHHHHHHHHHhc--------------CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHH
Q 008235 202 FVNSWGIEFWKCYSS--------------AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQE 267 (573)
Q Consensus 202 ~~t~iQ~~aip~il~--------------g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Ptre 267 (573)
.++|+|..|++.++. +++.+++++|| ||||+++ ++++..+... ....++||||||++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TG-SGKT~t~-~~l~~ll~~~-------~~~~rvLvlvpr~e 341 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTG-SGKTLTS-FKAARLATEL-------DFIDKVFFVVDRKD 341 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTT-SSHHHHH-HHHHHHHTTC-------TTCCEEEEEECGGG
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCC-CCHHHHH-HHHHHHHHhc-------CCCceEEEEeCcHH
Confidence 349999999999876 37899999999 9999997 7777544321 13469999999999
Q ss_pred HHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC--CCCCCccEEEEeCcccccCc
Q 008235 268 KAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA--IDVSGVSLLVVDRLDSLSKG 345 (573)
Q Consensus 268 La~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~--~~l~~l~~lViDEad~ll~~ 345 (573)
|+.|+.+.+..+... .+.|+.+...+...+...+++|+|+||++|..++.... ..+....+||+||||++...
T Consensus 342 L~~Q~~~~f~~f~~~-----~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~ 416 (1038)
T 2w00_A 342 LDYQTMKEYQRFSPD-----SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG 416 (1038)
T ss_dssp CCHHHHHHHHTTSTT-----CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH
T ss_pred HHHHHHHHHHHhccc-----ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch
Confidence 999999999988532 24566666666666754478999999999999887542 24567899999999998754
Q ss_pred chHHHHHHhcCCCCcEEEEeccCCccHH----HHHHHHhcCCceEEEcCCC--ccccccceEEEEEE-------------
Q 008235 346 DTLSLIRQSISGKPHTVVFNDCLTYTSV----PAVQNLLLGSINRLSLNQS--VASQSACIIQSVNV------------- 406 (573)
Q Consensus 346 ~~l~~Il~~l~~~~q~l~~SAT~~~~~~----~~~~~~l~~~~~~i~~~~~--~~~~~~~i~~~~~~------------- 406 (573)
.....|+..++ +.++++||||+..... .....+++.++..+.+... +.... .+...+..
T Consensus 417 ~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~-p~~v~y~~v~~~~~~~~~e~d 494 (1038)
T 2w00_A 417 EAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVL-KFKVDYNDVRPQFKSLETETD 494 (1038)
T ss_dssp HHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSC-CEEEEECCCCGGGHHHHTCCC
T ss_pred HHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcC-CeEEEEEeccchhhhcccccc
Confidence 44667777775 5799999999875321 1222333333222211100 00000 01100100
Q ss_pred ------------cCChhHHHHHHHH-HHHHHhccC----CCCCCCcEEEEecChhhHHHHHHHHHHCC------------
Q 008235 407 ------------CASDEEKILKGIQ-VLDHAYGDH----FHSEPLKVLYIVGKDSKFQNLVSTLKCKG------------ 457 (573)
Q Consensus 407 ------------~~~~~~k~~~l~~-~L~~~~~~~----~~~~~~k~lIF~~s~~~~~~l~~~L~~~g------------ 457 (573)
.. ...+...+.. ++.++.... ....+.++||||+|+..|..++..|...+
T Consensus 495 ~~~~~~i~~~~~l~-~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~ 573 (1038)
T 2w00_A 495 EKKLSAAENQQAFL-HPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKP 573 (1038)
T ss_dssp HHHHHHTCSTTTTT-CHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCC
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccccc
Confidence 01 1233333333 444432211 00124689999999999999999998754
Q ss_pred CCeeeecCCC------------------------------------------------------HHHHHHHHHhcCCCCC
Q 008235 458 YSISTGSNCI------------------------------------------------------VSHIKNSVEADGRKRP 483 (573)
Q Consensus 458 ~~~~~~~~~~------------------------------------------------------~~~~l~~F~~~g~~~~ 483 (573)
+.+...+|++ +.+++++| ++|..++
T Consensus 574 ~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~F-k~g~i~I 652 (1038)
T 2w00_A 574 LRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRV-KNQDIDL 652 (1038)
T ss_dssp CCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHH-HTTSSSE
T ss_pred CcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH-HcCCCeE
Confidence 4444334431 33467889 8899888
Q ss_pred eEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCc----ceEEEEecc
Q 008235 484 AVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVS----GILHSFFTK 538 (573)
Q Consensus 484 l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~----G~~i~~~~~ 538 (573)
|++ +|+. ++|+|+|.+ +|+++|.|.+...|+||+||++|.+.. |.++.|+..
T Consensus 653 LIv-vd~l-ltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 653 LIV-VGMF-LTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp EEE-SSTT-SSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred EEE-cchH-HhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 876 6888 599999999 788999999999999999999999864 888888764
No 69
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=2.6e-32 Score=303.24 Aligned_cols=277 Identities=9% Similarity=0.016 Sum_probs=193.2
Q ss_pred HHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEe
Q 008235 210 FWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSL 289 (573)
Q Consensus 210 aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~ 289 (573)
.....+.|+|++++|||| ||||+ +++..+... ..++|++|||+||.|+++.+..+ |+.+..+
T Consensus 148 p~ar~l~rk~vlv~apTG-SGKT~----~al~~l~~~----------~~gl~l~PtR~LA~Qi~~~l~~~---g~~v~ll 209 (677)
T 3rc3_A 148 PDARAMQRKIIFHSGPTN-SGKTY----HAIQKYFSA----------KSGVYCGPLKLLAHEIFEKSNAA---GVPCDLV 209 (677)
T ss_dssp HHHHTSCCEEEEEECCTT-SSHHH----HHHHHHHHS----------SSEEEEESSHHHHHHHHHHHHHT---TCCEEEE
T ss_pred HHHHhcCCCEEEEEcCCC-CCHHH----HHHHHHHhc----------CCeEEEeCHHHHHHHHHHHHHhc---CCcEEEE
Confidence 334567899999999999 99998 445555432 23599999999999999998876 8889999
Q ss_pred CCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC---cchHHHHHHhcC-CCCcEEEEe
Q 008235 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSIS-GKPHTVVFN 365 (573)
Q Consensus 290 ~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~-~~~q~l~~S 365 (573)
+||....- ..-.+ ..+++++|++.+ .....+++|||||||+|++ ...+..++..++ ...|++++|
T Consensus 210 tG~~~~iv--~TpGr-~~~il~~T~e~~--------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~S 278 (677)
T 3rc3_A 210 TGEERVTV--QPNGK-QASHVSCTVEMC--------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEP 278 (677)
T ss_dssp CSSCEECC--STTCC-CCSEEEEEGGGC--------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECG
T ss_pred ECCeeEEe--cCCCc-ccceeEecHhHh--------hhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEecc
Confidence 98764310 00000 256777776543 1346789999999999987 567777888777 778999999
Q ss_pred ccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhh
Q 008235 366 DCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSK 445 (573)
Q Consensus 366 AT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~ 445 (573)
||.+. +..++... ..++........ ..+. .....- ..+... ....||||+|+..
T Consensus 279 AT~~~-i~~l~~~~-~~~~~v~~~~r~-----~~l~----~~~~~l-------~~l~~~--------~~g~iIf~~s~~~ 332 (677)
T 3rc3_A 279 AAIDL-VMELMYTT-GEEVEVRDYKRL-----TPIS----VLDHAL-------ESLDNL--------RPGDCIVCFSKND 332 (677)
T ss_dssp GGHHH-HHHHHHHH-TCCEEEEECCCS-----SCEE----ECSSCC-------CSGGGC--------CTTEEEECSSHHH
T ss_pred chHHH-HHHHHHhc-CCceEEEEeeec-----chHH----HHHHHH-------HHHHhc--------CCCCEEEEcCHHH
Confidence 99532 44444332 333322111111 0011 010000 001111 2456899999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhc--CCCCCeEEEEeccccCCCccCCCCEEEeCCC---------
Q 008235 446 FQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEAD--GRKRPAVSMIDKDHISTAELEEYEVVIVPDF--------- 509 (573)
Q Consensus 446 ~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~--g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~--------- 509 (573)
++.++..|...++.+.. +||+ |.++++.| ++ |+.+++++ ||++ .+|||+ +|++||+|++
T Consensus 333 ie~la~~L~~~g~~v~~-lHG~L~~~~R~~~~~~F-~~~~g~~~VLVA-Tdi~-e~GlDi-~v~~VI~~~~~k~~~~~~G 407 (677)
T 3rc3_A 333 IYSVSRQIEIRGLESAV-IYGSLPPGTKLAQAKKF-NDPNDPCKILVA-TDAI-GMGLNL-SIRRIIFYSLIKPSINEKG 407 (677)
T ss_dssp HHHHHHHHHHTTCCCEE-ECTTSCHHHHHHHHHHH-HCTTSSCCEEEE-CGGG-GSSCCC-CBSEEEESCSBC-------
T ss_pred HHHHHHHHHhcCCCeee-eeccCCHHHHHHHHHHH-HccCCCeEEEEe-CcHH-HCCcCc-CccEEEECCccccccccCC
Confidence 99999999999999886 4775 34589999 77 88888887 6788 489999 9999999999
Q ss_pred -----CCCHHHHHHHHhccccCCCc---ceEEEEeccccHHHHHHH
Q 008235 510 -----IISMKNYVEILTSMARHTVS---GILHSFFTKDDAAHAGQM 547 (573)
Q Consensus 510 -----P~s~~~YiqR~GR~gR~g~~---G~~i~~~~~~d~~~~~~l 547 (573)
|.+..+|+||+|||||.|.. |.|+.+ .+.+...+..+
T Consensus 408 ~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l-~~~d~~~~~~~ 452 (677)
T 3rc3_A 408 ERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM-NHEDLSLLKEI 452 (677)
T ss_dssp ----CBCCHHHHHHHHTTBTCTTSSCSSEEEEES-STTHHHHHHHH
T ss_pred ccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEE-ecchHHHHHHH
Confidence 78999999999999999964 666654 44555444443
No 70
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=8.9e-28 Score=264.64 Aligned_cols=133 Identities=11% Similarity=0.096 Sum_probs=114.1
Q ss_pred HHhCCCccCCCCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHH
Q 008235 190 MRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (573)
Q Consensus 190 l~~~g~~~p~~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa 269 (573)
-+-.|+ .| ||+|..++|.+++|+ |+.+.|| ||||++|++|++...+ .|..++||+||++||
T Consensus 73 ~R~lG~-~P-----t~VQ~~~ip~LlqG~--IaeakTG-eGKTLvf~Lp~~L~aL----------~G~qv~VvTPTreLA 133 (997)
T 2ipc_A 73 KRYLGM-RH-----FDVQLIGGAVLHEGK--IAEMKTG-EGKTLVATLAVALNAL----------TGKGVHVVTVNDYLA 133 (997)
T ss_dssp HHHTCC-CC-----CHHHHHHHHHHHTTS--EEECCST-HHHHHHHHHHHHHHHT----------TCSCCEEEESSHHHH
T ss_pred HHHhCC-CC-----cHHHHhhcccccCCc--eeeccCC-CchHHHHHHHHHHHHH----------hCCCEEEEeCCHHHH
Confidence 344688 88 999999999999998 9999999 9999999999975443 255799999999999
Q ss_pred HHHHHHHhhh-hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHH-HHHHHcCC------CCCC---CccEEEEeC
Q 008235 270 AKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLKA------IDVS---GVSLLVVDR 338 (573)
Q Consensus 270 ~Qi~~~~~~l-~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL-~~~l~~~~------~~l~---~l~~lViDE 338 (573)
.|+++++..| ..+|+++++++||.+... +.+.. ++||+||||++| +|+|..+. +.++ ++.++||||
T Consensus 134 ~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~--r~~ay-~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDE 210 (997)
T 2ipc_A 134 RRDAEWMGPVYRGLGLSVGVIQHASTPAE--RRKAY-LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDE 210 (997)
T ss_dssp HHHHHHHHHHHHTTTCCEEECCTTCCHHH--HHHHH-TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETT
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCCHHH--HHHHc-CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEec
Confidence 9999999998 556999999999988543 34444 699999999999 89998763 5677 899999999
Q ss_pred cccccC
Q 008235 339 LDSLSK 344 (573)
Q Consensus 339 ad~ll~ 344 (573)
||.|+.
T Consensus 211 aDsmLi 216 (997)
T 2ipc_A 211 VDSILI 216 (997)
T ss_dssp HHHHTT
T ss_pred hHHHHH
Confidence 999983
No 71
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.96 E-value=9.1e-29 Score=287.33 Aligned_cols=329 Identities=9% Similarity=-0.000 Sum_probs=212.1
Q ss_pred CCCCCHHHHHHHHHHhcC--CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHh
Q 008235 200 PLFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (573)
Q Consensus 200 ~~~~t~iQ~~aip~il~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~ 277 (573)
.+.++|+|.+++..++.. ..+|++.+|| +|||++++..+...+... ...++|||||+ .|+.|+...+.
T Consensus 151 ~~~LrpyQ~eav~~~l~~~~~~~LLad~tG-lGKTi~Ai~~i~~l~~~g--------~~~rvLIVvP~-sLl~Qw~~E~~ 220 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRHAPRVLLADEVG-LGKTIEAGMILHQQLLSG--------AAERVLIIVPE-TLQHQWLVEML 220 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSSSCEEEECCCTT-SCHHHHHHHHHHHHHHTS--------SCCCEEEECCT-TTHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEECCCC-CcHHHHHHHHHHHHHHhC--------CCCeEEEEeCH-HHHHHHHHHHH
Confidence 466799999999988874 5889999999 999999877766555432 23479999999 99999999885
Q ss_pred hhhcCCcEEEEeCCCCCHHHHHHH-hhcCCCcEEEeCHHHHHHHHHc-CCCCCCCccEEEEeCcccccC-c---ch-HHH
Q 008235 278 PLKAFGIHTVSLHPGAAIDHQITG-LRSCEPEFLVSTPERLLKLVSL-KAIDVSGVSLLVVDRLDSLSK-G---DT-LSL 350 (573)
Q Consensus 278 ~l~~~~i~~~~~~gg~~~~~~~~~-l~~~~~~IlV~TP~rL~~~l~~-~~~~l~~l~~lViDEad~ll~-~---~~-l~~ 350 (573)
.. +++.+..+.|+......... -.....+|+|+|++.|...... ..+...++++|||||||++.. . .. ...
T Consensus 221 ~~--f~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~ 298 (968)
T 3dmq_A 221 RR--FNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQA 298 (968)
T ss_dssp HH--SCCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHH
T ss_pred HH--hCCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHH
Confidence 53 26666665543322211110 0011479999999877432111 112345789999999999976 1 11 333
Q ss_pred HHHhcCCCCcEEEEeccCCc-c---HHHHHHHH----------------------------hcC-C--------------
Q 008235 351 IRQSISGKPHTVVFNDCLTY-T---SVPAVQNL----------------------------LLG-S-------------- 383 (573)
Q Consensus 351 Il~~l~~~~q~l~~SAT~~~-~---~~~~~~~~----------------------------l~~-~-------------- 383 (573)
+........+++++|||.-. . +..+...+ +.. +
T Consensus 299 l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~ 378 (968)
T 3dmq_A 299 IEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIG 378 (968)
T ss_dssp HHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTC
T ss_pred HHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhc
Confidence 33333355679999999742 1 11111100 000 0
Q ss_pred ------c------------------------------eEEEcCCCc--cccccceEEEEEE-------------------
Q 008235 384 ------I------------------------------NRLSLNQSV--ASQSACIIQSVNV------------------- 406 (573)
Q Consensus 384 ------~------------------------------~~i~~~~~~--~~~~~~i~~~~~~------------------- 406 (573)
+ ..+...... ......+......
T Consensus 379 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~ 458 (968)
T 3dmq_A 379 EQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK 458 (968)
T ss_dssp TTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCS
T ss_pred chhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhh
Confidence 0 000000000 0000000000110
Q ss_pred -------------------------cCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHH-CCCCe
Q 008235 407 -------------------------CASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC-KGYSI 460 (573)
Q Consensus 407 -------------------------~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~-~g~~~ 460 (573)
......|...|.+++.. .. +.++||||+++..++.++..|.. .|+.+
T Consensus 459 ~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~----~~---~~k~iVF~~~~~~~~~l~~~L~~~~g~~~ 531 (968)
T 3dmq_A 459 SAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS----HR---SQKVLVICAKAATALQLEQVLREREGIRA 531 (968)
T ss_dssp SGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH----TS---SSCCCEECSSTHHHHHHHHHHHTTTCCCE
T ss_pred hhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh----CC---CCCEEEEeCcHHHHHHHHHHHHHHcCCcE
Confidence 01134577777777765 22 67999999999999999999994 69998
Q ss_pred eeecCCC-----HHHHHHHHHhcCC--CCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEE
Q 008235 461 STGSNCI-----VSHIKNSVEADGR--KRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILH 533 (573)
Q Consensus 461 ~~~~~~~-----~~~~l~~F~~~g~--~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i 533 (573)
..+ ||+ +.++++.| ++|. ..+|++ +++.+ +|+|+|++++||+||+|.++..|+||+||+||.|+.|.++
T Consensus 532 ~~l-hG~~~~~~R~~~l~~F-~~g~~~~~vLva-T~v~~-~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~ 607 (968)
T 3dmq_A 532 AVF-HEGMSIIERDRAAAWF-AEEDTGAQVLLC-SEIGS-EGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQ 607 (968)
T ss_dssp EEE-CTTSCTTHHHHHHHHH-HSTTSSCEEEEC-SCCTT-CSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCE
T ss_pred EEE-eCCCCHHHHHHHHHHH-hCCCCcccEEEe-cchhh-cCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEE
Confidence 864 765 56689999 8887 666655 46763 7999999999999999999999999999999999998766
Q ss_pred EEeccccHHHHHHHHHHH
Q 008235 534 SFFTKDDAAHAGQMIEIL 551 (573)
Q Consensus 534 ~~~~~~d~~~~~~l~~~l 551 (573)
++....+...-..|.+.+
T Consensus 608 v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 608 IHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp EEEEEETTSHHHHHHHHH
T ss_pred EEEecCCChHHHHHHHHH
Confidence 664433322334444444
No 72
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.96 E-value=3.3e-28 Score=264.52 Aligned_cols=306 Identities=8% Similarity=0.024 Sum_probs=205.0
Q ss_pred CCHHHHHHHHHH----hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 203 VNSWGIEFWKCY----SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 203 ~t~iQ~~aip~i----l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
++|+|.++++.+ ..|+++|++++|| +|||++++. ++..+.... ....+|||||+ .|+.|+.+.+..
T Consensus 38 L~~~Q~~~v~~l~~~~~~~~~~ilad~~G-lGKT~~ai~-~i~~~~~~~-------~~~~~LIv~P~-~l~~qw~~e~~~ 107 (500)
T 1z63_A 38 LRPYQIKGFSWMRFMNKLGFGICLADDMG-LGKTLQTIA-VFSDAKKEN-------ELTPSLVICPL-SVLKNWEEELSK 107 (500)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCEEECCCTT-SCHHHHHHH-HHHHHHHTT-------CCSSEEEEECS-TTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCCCEEEEeCCC-CcHHHHHHH-HHHHHHhcC-------CCCCEEEEccH-HHHHHHHHHHHH
Confidence 599999999876 3578999999999 999999644 444444321 34579999995 589999999998
Q ss_pred hhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-cchHHHHHHhcCC
Q 008235 279 LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSISG 357 (573)
Q Consensus 279 l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l~~ 357 (573)
+.. ++++..++|+... .... .++|+|+|++.+..... +....+++||+||||++.. .......+..++
T Consensus 108 ~~~-~~~v~~~~g~~~~-----~~~~-~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~- 176 (500)
T 1z63_A 108 FAP-HLRFAVFHEDRSK-----IKLE-DYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELK- 176 (500)
T ss_dssp HCT-TSCEEECSSSTTS-----CCGG-GSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSC-
T ss_pred HCC-CceEEEEecCchh-----cccc-CCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhHHHHHHHHhhc-
Confidence 853 5677777776532 1112 58999999999865433 2334678999999999987 555566666664
Q ss_pred CCcEEEEeccCCcc-HHHHH------------------------------------HHHhcCCceEEEcCCCc---cccc
Q 008235 358 KPHTVVFNDCLTYT-SVPAV------------------------------------QNLLLGSINRLSLNQSV---ASQS 397 (573)
Q Consensus 358 ~~q~l~~SAT~~~~-~~~~~------------------------------------~~~l~~~~~~i~~~~~~---~~~~ 397 (573)
..+.+++|||.... ..++. ..++ .|+ .+.....+ ....
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~-~lrr~k~~~~~~~~l 254 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPF-ILRRTKYDKAIINDL 254 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTT-EECCCTTCHHHHTTS
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhH-eeeecccccchhhcC
Confidence 45789999997432 22211 1111 232 22111100 0011
Q ss_pred cceEEEEEEcC-C-------------------------------------------------------hhHHHHHHHHHH
Q 008235 398 ACIIQSVNVCA-S-------------------------------------------------------DEEKILKGIQVL 421 (573)
Q Consensus 398 ~~i~~~~~~~~-~-------------------------------------------------------~~~k~~~l~~~L 421 (573)
+......+.++ + ...|...+.++|
T Consensus 255 p~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 255 PDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEII 334 (500)
T ss_dssp CSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHH
Confidence 11222222221 0 123555556666
Q ss_pred HHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC-CCCeeeecCCC-----HHHHHHHHHhcC-CCCCeEEEEeccccC
Q 008235 422 DHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK-GYSISTGSNCI-----VSHIKNSVEADG-RKRPAVSMIDKDHIS 494 (573)
Q Consensus 422 ~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~-g~~~~~~~~~~-----~~~~l~~F~~~g-~~~~l~~lvd~~s~r 494 (573)
...... +.++||||++...++.++..|... |+.+..+ ||+ |.++++.| +++ ...++++-+++.+ +
T Consensus 335 ~~~~~~-----~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~~~~~R~~~~~~F-~~~~~~~vil~st~~~~-~ 406 (500)
T 1z63_A 335 EEALDE-----GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFL-YGELSKKERDDIISKF-QNNPSVKFIVLSVKAGG-F 406 (500)
T ss_dssp HHHHTT-----TCCEEEECSCHHHHHHHHHHHHHHHTCCCCEE-ETTSCHHHHHHHHHHH-HHCTTCCCCEEECCCC--C
T ss_pred HHHHcc-----CCcEEEEEehHHHHHHHHHHHHHhhCCCeEEE-ECCCCHHHHHHHHHHh-cCCCCCCEEEEeccccc-C
Confidence 665543 469999999999999999999875 8888764 664 55689999 666 4554433245663 7
Q ss_pred CCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceE--EEEeccc
Q 008235 495 TAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGIL--HSFFTKD 539 (573)
Q Consensus 495 GlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~--i~~~~~~ 539 (573)
|+|++++++||+||+|.++..|+||+||++|.|+.+.+ +.|++..
T Consensus 407 Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 407 GINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999999999999999999999999999976554 5566655
No 73
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=5.3e-27 Score=221.89 Aligned_cols=177 Identities=21% Similarity=0.251 Sum_probs=137.5
Q ss_pred HHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHH
Q 008235 376 VQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC 455 (573)
Q Consensus 376 ~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~ 455 (573)
...|+.+|. .|.++.. ..+..+|.|.++.++ ...|...|.++|... ..++||||+++..++.++..|..
T Consensus 8 ~~~~~~~p~-~i~v~~~-~~~~~~i~q~~~~~~-~~~K~~~L~~~l~~~--------~~~~lVF~~~~~~~~~l~~~L~~ 76 (191)
T 2p6n_A 8 SSGVDLGTE-NLYFQSM-GAASLDVIQEVEYVK-EEAKMVYLLECLQKT--------PPPVLIFAEKKADVDAIHEYLLL 76 (191)
T ss_dssp ----------------------CCSEEEEEECC-GGGHHHHHHHHHTTS--------CSCEEEECSCHHHHHHHHHHHHH
T ss_pred cccccCCCE-EEEECCC-CCCCcCceEEEEEcC-hHHHHHHHHHHHHhC--------CCCEEEEECCHHHHHHHHHHHHH
Confidence 346788896 7888764 366789999999997 678988777777542 46899999999999999999999
Q ss_pred CCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcc
Q 008235 456 KGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSG 530 (573)
Q Consensus 456 ~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G 530 (573)
.|+.+..+ ||+ +.++++.| ++|...++++ +|++ .+|+|+|++++||+||+|.+..+|+||+||+||.|+.|
T Consensus 77 ~g~~~~~l-hg~~~~~~R~~~l~~F-~~g~~~vLva-T~~~-~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g 152 (191)
T 2p6n_A 77 KGVEAVAI-HGGKDQEERTKAIEAF-REGKKDVLVA-TDVA-SKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTG 152 (191)
T ss_dssp HTCCEEEE-CTTSCHHHHHHHHHHH-HHTSCSEEEE-CHHH-HTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CC
T ss_pred cCCcEEEE-eCCCCHHHHHHHHHHH-hcCCCEEEEE-cCch-hcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCc
Confidence 99999874 775 45589999 8999998877 6788 48999999999999999999999999999999999999
Q ss_pred eEEEEeccc-cHHHHHHHHHHHHHcCCCCCHHHHHhhh
Q 008235 531 ILHSFFTKD-DAAHAGQMIEILEQCGQVVPDALRDLCH 567 (573)
Q Consensus 531 ~~i~~~~~~-d~~~~~~l~~~l~~~~~~vp~~l~~~~~ 567 (573)
.|++|+++. +...+..|.+.|+..++++|++|.+++.
T Consensus 153 ~~i~l~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 153 IATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred EEEEEEcCchhHHHHHHHHHHHHHccCcCCHHHHhhcC
Confidence 999999976 8899999999999999999999998864
No 74
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=212.02 Aligned_cols=163 Identities=18% Similarity=0.208 Sum_probs=138.8
Q ss_pred ccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HH
Q 008235 395 SQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VS 469 (573)
Q Consensus 395 ~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~ 469 (573)
.+..+|.|.++.++ ...|...|.++|.... +..++||||+++..++.++..|...|+.+..+ ||+ +.
T Consensus 15 ~~~~~i~q~~~~v~-~~~K~~~L~~ll~~~~------~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~l-hg~~~~~~r~ 86 (185)
T 2jgn_A 15 STSENITQKVVWVE-ESDKRSFLLDLLNATG------KDSLTLVFVETKKGADSLEDFLYHEGYACTSI-HGDRSQRDRE 86 (185)
T ss_dssp -CCTTEEEEEEECC-GGGHHHHHHHHHHHC-------CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEE-C--------C
T ss_pred CCCCCceEEEEEeC-cHHHHHHHHHHHHhcC------CCCeEEEEECCHHHHHHHHHHHHHcCCceEEE-eCCCCHHHHH
Confidence 45678999999997 6789999888887742 25799999999999999999999999999864 764 44
Q ss_pred HHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHH
Q 008235 470 HIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIE 549 (573)
Q Consensus 470 ~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~ 549 (573)
++++.| ++|...+|++ +|+.+ +|+|+|++++||+||+|.++.+|+||+||+||.|+.|.|++|+++.|...+..+.+
T Consensus 87 ~~~~~f-~~g~~~vLva-T~~~~-~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 163 (185)
T 2jgn_A 87 EALHQF-RSGKSPILVA-TAVAA-RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 163 (185)
T ss_dssp HHHHHH-HHTSSSEEEE-EC-------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHH
T ss_pred HHHHHH-HcCCCeEEEE-cChhh-cCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHH
Confidence 589999 8999998877 57884 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHhhhc
Q 008235 550 ILEQCGQVVPDALRDLCHT 568 (573)
Q Consensus 550 ~l~~~~~~vp~~l~~~~~~ 568 (573)
.+..+++++|++|..++..
T Consensus 164 ~l~~~~~~~~~~l~~~a~~ 182 (185)
T 2jgn_A 164 LLVEAKQEVPSWLENMAYE 182 (185)
T ss_dssp HHHHTTCCCCHHHHHHHC-
T ss_pred HHHhccCCCCHHHHHHHHH
Confidence 9999999999999999853
No 75
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=7.3e-24 Score=236.66 Aligned_cols=333 Identities=9% Similarity=0.016 Sum_probs=212.4
Q ss_pred CCHHHHHHHHHHh---------cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHH
Q 008235 203 VNSWGIEFWKCYS---------SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (573)
Q Consensus 203 ~t~iQ~~aip~il---------~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~ 273 (573)
+.|+|.+++..+. .++..|++.+|| +|||+..+..+...+...+.. .....++|||||+ .|+.|+.
T Consensus 56 LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mG-lGKT~~~i~~i~~l~~~~~~~---~p~~~~~LiV~P~-sll~qW~ 130 (644)
T 1z3i_X 56 LRPHQREGVKFLWDCVTGRRIENSYGCIMADEMG-LGKTLQCITLIWTLLKQSPDC---KPEIDKVIVVSPS-SLVRNWY 130 (644)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTT-SCHHHHHHHHHHHHHHCCTTS---SCSCSCEEEEECH-HHHHHHH
T ss_pred ccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCC-chHHHHHHHHHHHHHHhCccc---cCCCCcEEEEecH-HHHHHHH
Confidence 4899999998774 356789999999 999999766655444332211 0123469999997 8999999
Q ss_pred HHHhhhhcCCcEEEEeCCCCCHHH--HHHH-hhc----CCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-c
Q 008235 274 SVCKPLKAFGIHTVSLHPGAAIDH--QITG-LRS----CEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-G 345 (573)
Q Consensus 274 ~~~~~l~~~~i~~~~~~gg~~~~~--~~~~-l~~----~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-~ 345 (573)
+.+.++....+.++.++||..... .... +.. ...+|+|+|++.+.... ..+....+++||+||||++-. .
T Consensus 131 ~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 131 NEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh
Confidence 999998554677788888764322 1111 111 13789999999886543 334445788999999999976 4
Q ss_pred chHHHHHHhcCCCCcEEEEeccCCcc----HH---------------HHHHHHh--------------------------
Q 008235 346 DTLSLIRQSISGKPHTVVFNDCLTYT----SV---------------PAVQNLL-------------------------- 380 (573)
Q Consensus 346 ~~l~~Il~~l~~~~q~l~~SAT~~~~----~~---------------~~~~~~l-------------------------- 380 (573)
......+..+. ....+++|||.-.. +. .+...|.
T Consensus 209 ~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 287 (644)
T 1z3i_X 209 NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQEL 287 (644)
T ss_dssp HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHH
Confidence 44444444554 35679999996332 00 0000000
Q ss_pred ---cCCceEEEcCCCc--cccccceEEEEEEcC-C---------------------------------------------
Q 008235 381 ---LGSINRLSLNQSV--ASQSACIIQSVNVCA-S--------------------------------------------- 409 (573)
Q Consensus 381 ---~~~~~~i~~~~~~--~~~~~~i~~~~~~~~-~--------------------------------------------- 409 (573)
-.|. .+.-.... ...+..+. .++.|. +
T Consensus 288 ~~~l~~~-~lRR~k~~v~~~LP~k~~-~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 288 ISIVNRC-LIRRTSDILSKYLPVKIE-QVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHH-EECCCGGGGGGTSCCEEE-EEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHH-HHHhhHHhHhhhCCCceE-EEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 0010 00000000 00111111 112111 0
Q ss_pred -------------------------------hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCC
Q 008235 410 -------------------------------DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458 (573)
Q Consensus 410 -------------------------------~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~ 458 (573)
...|+..|..++..+... . +.++||||++...++.+...|...|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~-~---~~k~lIFs~~~~~~~~l~~~l~~~g~ 441 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTT-T---SDKVVLVSNYTQTLDLFEKLCRNRRY 441 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHH-C---CCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhc-C---CCEEEEEEccHHHHHHHHHHHHHCCC
Confidence 123444444444443221 1 46999999999999999999999999
Q ss_pred CeeeecCCC-----HHHHHHHHHhcCCCCCeEEEE--eccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcc-
Q 008235 459 SISTGSNCI-----VSHIKNSVEADGRKRPAVSMI--DKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSG- 530 (573)
Q Consensus 459 ~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lv--d~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G- 530 (573)
.+..+ ||. |.++++.| +++.....+.|+ ++.+ .|||++++++||+||+|.++..|.|++||++|.|+..
T Consensus 442 ~~~~l-~G~~~~~~R~~~i~~F-~~~~~~~~v~L~st~a~g-~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 518 (644)
T 1z3i_X 442 LYVRL-DGTMSIKKRAKIVERF-NNPSSPEFIFMLSSKAGG-CGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 518 (644)
T ss_dssp CEEEE-CSSCCHHHHHHHHHHH-HSTTCCCCEEEEEGGGSC-TTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSC
T ss_pred CEEEE-eCCCCHHHHHHHHHHh-cCCCCCcEEEEEeccccc-CCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCc
Confidence 99875 664 56689999 777765322233 4442 5999999999999999999999999999999999764
Q ss_pred -eEEEEeccc--cHHHHHHHHHHHH
Q 008235 531 -ILHSFFTKD--DAAHAGQMIEILE 552 (573)
Q Consensus 531 -~~i~~~~~~--d~~~~~~l~~~l~ 552 (573)
.++.|++.. |...+..+..-..
T Consensus 519 v~v~~lv~~~tiEe~i~~~~~~K~~ 543 (644)
T 1z3i_X 519 CYIYRLLSTGTIEEKILQRQAHKKA 543 (644)
T ss_dssp EEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCHHHHHHHHHHHHHH
Confidence 556667765 4445554444333
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.93 E-value=3.8e-25 Score=247.09 Aligned_cols=172 Identities=15% Similarity=0.094 Sum_probs=123.0
Q ss_pred CCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcE
Q 008235 357 GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKV 436 (573)
Q Consensus 357 ~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~ 436 (573)
...|+++||||++...... ...+....+... ....+. +.... ...+...+...|...... +.++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~-----~~~~~~~~~r~~-~l~~p~----i~v~~-~~~~~~~Ll~~l~~~~~~-----~~~v 442 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH-----SGRVVEQIIRPT-GLLDPL----VRVKP-TENQILDLMEGIRERAAR-----GERT 442 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH-----CSEEEEECSCTT-CCCCCE----EEEEC-STTHHHHHHHHHHHHHHT-----TCEE
T ss_pred hcCCEEEEecCCCHHHHHh-----hhCeeeeeeccC-CCCCCe----EEEec-ccchHHHHHHHHHHHHhc-----CCEE
Confidence 4679999999998643211 111111111110 011111 11222 334555555666655443 4699
Q ss_pred EEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCC--
Q 008235 437 LYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDF-- 509 (573)
Q Consensus 437 lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~-- 509 (573)
||||+|+..|+.|+..|...|+.+..+ ||+ +.++++.| +.|...++++ ||+. .+|+|+|+|++||+||.
T Consensus 443 lVf~~t~~~ae~L~~~L~~~gi~~~~l-h~~~~~~~R~~~~~~f-~~g~~~VLva-T~~l-~~GlDip~v~lVI~~d~d~ 518 (664)
T 1c4o_A 443 LVTVLTVRMAEELTSFLVEHGIRARYL-HHELDAFKRQALIRDL-RLGHYDCLVG-INLL-REGLDIPEVSLVAILDADK 518 (664)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEE-CTTCCHHHHHHHHHHH-HTTSCSEEEE-SCCC-CTTCCCTTEEEEEETTTTS
T ss_pred EEEECCHHHHHHHHHHHHhcCCCceee-cCCCCHHHHHHHHHHh-hcCCceEEEc-cChh-hcCccCCCCCEEEEeCCcc
Confidence 999999999999999999999998764 675 45689999 8999998777 5677 48999999999999997
Q ss_pred ---CCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHH
Q 008235 510 ---IISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIE 549 (573)
Q Consensus 510 ---P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~ 549 (573)
|.+..+|+||+|||||.+ .|.|++|+++.+..+...|.+
T Consensus 519 ~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 519 EGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp CSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 999999999999999985 899999999876655555443
No 77
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.6e-24 Score=247.82 Aligned_cols=325 Identities=11% Similarity=0.033 Sum_probs=214.6
Q ss_pred CCCHHHHHHHHHHh----cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHh
Q 008235 202 FVNSWGIEFWKCYS----SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (573)
Q Consensus 202 ~~t~iQ~~aip~il----~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~ 277 (573)
.+.|+|.+++..++ .|++.|++.+|| +|||+..+..+...+.... ....+||||| ..|+.|+.+.+.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademG-lGKT~~ai~~i~~l~~~~~-------~~~~~LIV~P-~sll~qW~~E~~ 306 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMG-LGKTVQTVAFISWLIFARR-------QNGPHIIVVP-LSTMPAWLDTFE 306 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTT-SSTTHHHHHHHHHHHHHHS-------CCSCEEEECC-TTTHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCC-cchHHHHHHHHHHHHHhcC-------CCCCEEEEEC-chHHHHHHHHHH
Confidence 46899999997665 789999999999 9999986655444333221 2345899999 678899999998
Q ss_pred hhhcCCcEEEEeCCCCCHHHHHHHh-----------hcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-c
Q 008235 278 PLKAFGIHTVSLHPGAAIDHQITGL-----------RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-G 345 (573)
Q Consensus 278 ~l~~~~i~~~~~~gg~~~~~~~~~l-----------~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-~ 345 (573)
.+.. ++.+.+++|+.......... ....++|+|+|++.+...... +......+|||||||++-. .
T Consensus 307 ~~~p-~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~ 383 (800)
T 3mwy_W 307 KWAP-DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE 383 (800)
T ss_dssp HHST-TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS
T ss_pred HHCC-CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch
Confidence 8753 67777777776544443322 123578999999998654322 1123578999999999976 5
Q ss_pred chHHHHHHhcCCCCcEEEEeccCCcc-HHH---HHHHHhc-----------------------------CCceEEEcCCC
Q 008235 346 DTLSLIRQSISGKPHTVVFNDCLTYT-SVP---AVQNLLL-----------------------------GSINRLSLNQS 392 (573)
Q Consensus 346 ~~l~~Il~~l~~~~q~l~~SAT~~~~-~~~---~~~~~l~-----------------------------~~~~~i~~~~~ 392 (573)
..+...+..+. ....+++|||.-.. +.+ ++..+.. .|+ .+.....
T Consensus 384 s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~-~lRR~k~ 461 (800)
T 3mwy_W 384 SSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPF-ILRRLKK 461 (800)
T ss_dssp SHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGG-EEECCGG
T ss_pred hHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHH-HhhhhHH
Confidence 56666666664 34568899997321 111 1111100 111 1111000
Q ss_pred -ccccccceEEEEEEcCC--------------------------------------------------------------
Q 008235 393 -VASQSACIIQSVNVCAS-------------------------------------------------------------- 409 (573)
Q Consensus 393 -~~~~~~~i~~~~~~~~~-------------------------------------------------------------- 409 (573)
.....+......+.|.-
T Consensus 462 dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~ 541 (800)
T 3mwy_W 462 DVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGK 541 (800)
T ss_dssp GGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----
T ss_pred hhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhccccc
Confidence 00001111111211110
Q ss_pred ------------hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHH
Q 008235 410 ------------DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIK 472 (573)
Q Consensus 410 ------------~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l 472 (573)
...|+..|..+|..+... +.++||||.....++.|...|...|+.+..+ ||. |.+++
T Consensus 542 ~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~-----g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i-~G~~~~~eR~~~i 615 (800)
T 3mwy_W 542 MTRENVLRGLIMSSGKMVLLDQLLTRLKKD-----GHRVLIFSQMVRMLDILGDYLSIKGINFQRL-DGTVPSAQRRISI 615 (800)
T ss_dssp CCSHHHHHHHHHTCHHHHHHHHHHHHHTTT-----TCCEEEEESCHHHHHHHHHHHHHHTCCCEEE-STTSCHHHHHHHH
T ss_pred ccHHHHHHHhhhcChHHHHHHHHHHHHhhC-----CCeEEEEechHHHHHHHHHHHHhCCCCEEEE-eCCCCHHHHHHHH
Confidence 123566666666665443 4699999999999999999999999998865 664 55689
Q ss_pred HHHHhcCCCCCeEEEE--eccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCc--ceEEEEeccc--cHHHHHH
Q 008235 473 NSVEADGRKRPAVSMI--DKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVS--GILHSFFTKD--DAAHAGQ 546 (573)
Q Consensus 473 ~~F~~~g~~~~l~~lv--d~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~--G~~i~~~~~~--d~~~~~~ 546 (573)
+.| +++.....+.|+ ++.+ .|||++.+++||+||+|.++..++||+||+.|.|+. ..++.|++.. |...+..
T Consensus 616 ~~F-~~~~~~~~v~LlSt~agg-~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~ 693 (800)
T 3mwy_W 616 DHF-NSPDSNDFVFLLSTRAGG-LGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLER 693 (800)
T ss_dssp HTT-SSTTCSCCCEEEEHHHHT-TTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHH
T ss_pred HHh-hCCCCCceEEEEeccccc-CCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHH
Confidence 999 776555322233 4443 599999999999999999999999999999999975 4556677765 4455544
Q ss_pred HH
Q 008235 547 MI 548 (573)
Q Consensus 547 l~ 548 (573)
+.
T Consensus 694 ~~ 695 (800)
T 3mwy_W 694 AR 695 (800)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.92 E-value=4.3e-24 Score=238.44 Aligned_cols=171 Identities=13% Similarity=0.077 Sum_probs=122.9
Q ss_pred CCCcEEEEeccCCccHHHHHHHHhcCCceEEEcCCCccccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcE
Q 008235 357 GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKV 436 (573)
Q Consensus 357 ~~~q~l~~SAT~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~ 436 (573)
...|+++||||++...... ...+....+... ....+ . +.... ...+...++..|...... +.++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~-----~~~~~~~~~r~~-~l~~p-~---i~v~~-~~~~~~~Ll~~l~~~~~~-----~~~v 448 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH-----TDEMVEQIIRPT-GLLDP-L---IDVRP-IEGQIDDLIGEIQARIER-----NERV 448 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH-----CSSCEEECCCTT-CCCCC-E---EEEEC-STTHHHHHHHHHHHHHTT-----TCEE
T ss_pred cCCCEEEEecCCChhHHHh-----hhCeeeeeeccc-CCCCC-e---EEEec-ccchHHHHHHHHHHHHhc-----CCeE
Confidence 4689999999997643221 111111111111 01111 1 11222 334455555666655433 4699
Q ss_pred EEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCC--
Q 008235 437 LYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDF-- 509 (573)
Q Consensus 437 lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~-- 509 (573)
||||+|+..|+.|+..|...|+.+..+ ||+ +.++++.| +.|...++++ ||+. .+|+|+|+|++||+||.
T Consensus 449 lVf~~t~~~ae~L~~~L~~~gi~~~~l-h~~~~~~~R~~~l~~f-~~g~~~VLVa-T~~l-~~GlDip~v~lVi~~d~d~ 524 (661)
T 2d7d_A 449 LVTTLTKKMSEDLTDYLKEIGIKVNYL-HSEIKTLERIEIIRDL-RLGKYDVLVG-INLL-REGLDIPEVSLVAILDADK 524 (661)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEE-CTTCCHHHHHHHHHHH-HHTSCSEEEE-SCCC-STTCCCTTEEEEEETTTTC
T ss_pred EEEECCHHHHHHHHHHHHhcCCCeEEE-eCCCCHHHHHHHHHHH-hcCCeEEEEe-cchh-hCCcccCCCCEEEEeCccc
Confidence 999999999999999999999999764 675 45689999 8899998777 5777 48999999999999997
Q ss_pred ---CCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHH
Q 008235 510 ---IISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMI 548 (573)
Q Consensus 510 ---P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~ 548 (573)
|.+..+|+||+|||||. ..|.|++|+++.+..+...|.
T Consensus 525 ~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 525 EGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp CTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred ccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 99999999999999998 789999999987665554443
No 79
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=209.36 Aligned_cols=159 Identities=12% Similarity=0.114 Sum_probs=120.3
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHH-HHHHHhhhhc
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAK-VRSVCKPLKA 281 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Q-i~~~~~~l~~ 281 (573)
++|+|.++++.++.|+++++++||| +|||++|+++++..+....... .+.++||++||++|+.| +.+.+..+..
T Consensus 34 l~~~Q~~~i~~~~~~~~~li~~~tG-sGKT~~~~~~~~~~~~~~~~~~----~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 34 LRPYQMEVAQPALEGKNIIICLPTG-SGKTRVAVYIAKDHLDKKKKAS----EPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECSCH-HHHHHHHHHHHHHHHHHHHHTT----CCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred chHHHHHHHHHHhcCCCEEEEcCCC-CCHHHHHHHHHHHHHhhccccc----CCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 4999999999999999999999999 9999999999998776543221 36789999999999999 7888888866
Q ss_pred CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC------CCCCCccEEEEeCcccccCcchHHHHHHhc
Q 008235 282 FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA------IDVSGVSLLVVDRLDSLSKGDTLSLIRQSI 355 (573)
Q Consensus 282 ~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~------~~l~~l~~lViDEad~ll~~~~l~~Il~~l 355 (573)
.++++..++|+.........+.. +++|+|+||++|..++.... ..+.++++|||||||++.+......++..+
T Consensus 109 ~~~~v~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp TTSCEEECCC---CCCCHHHHHH-HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHH
T ss_pred cCceEEEEeCCcccchhHHhhcc-CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHH
Confidence 68899999998776555545555 68999999999999988743 567899999999999998622222222211
Q ss_pred -----------------CCCCcEEEEecc
Q 008235 356 -----------------SGKPHTVVFNDC 367 (573)
Q Consensus 356 -----------------~~~~q~l~~SAT 367 (573)
.+.++++++|||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 167899999998
No 80
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.91 E-value=1.4e-23 Score=193.25 Aligned_cols=147 Identities=19% Similarity=0.157 Sum_probs=129.4
Q ss_pred ccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HH
Q 008235 395 SQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VS 469 (573)
Q Consensus 395 ~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~ 469 (573)
....+|.|.++.++ .+.|+..|.++|... . ..++||||+++..++.++..|...|+.+..+ ||+ +.
T Consensus 5 ~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~----~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~-hg~~~~~~r~ 75 (163)
T 2hjv_A 5 LTTRNIEHAVIQVR-EENKFSLLKDVLMTE----N---PDSCIIFCRTKEHVNQLTDELDDLGYPCDKI-HGGMIQEDRF 75 (163)
T ss_dssp -CCCCEEEEEEECC-GGGHHHHHHHHHHHH----C---CSSEEEECSSHHHHHHHHHHHHHTTCCEEEE-CTTSCHHHHH
T ss_pred cCcccceEEEEECC-hHHHHHHHHHHHHhc----C---CCcEEEEECCHHHHHHHHHHHHHcCCcEEEE-eCCCCHHHHH
Confidence 44567999999997 688999888888764 1 5799999999999999999999999999864 765 45
Q ss_pred HHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHH
Q 008235 470 HIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIE 549 (573)
Q Consensus 470 ~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~ 549 (573)
++++.| ++|...+|++ +|+. .+|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.|...+..+.+
T Consensus 76 ~~~~~f-~~g~~~vlv~-T~~~-~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~ 152 (163)
T 2hjv_A 76 DVMNEF-KRGEYRYLVA-TDVA-ARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 152 (163)
T ss_dssp HHHHHH-HTTSCSEEEE-CGGG-TTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHH
T ss_pred HHHHHH-HcCCCeEEEE-CChh-hcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHH
Confidence 589999 8999988877 5777 489999999999999999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 008235 550 ILEQ 553 (573)
Q Consensus 550 ~l~~ 553 (573)
.+..
T Consensus 153 ~~~~ 156 (163)
T 2hjv_A 153 YIGF 156 (163)
T ss_dssp HHTS
T ss_pred HHCC
Confidence 7743
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=7.6e-24 Score=196.86 Aligned_cols=155 Identities=16% Similarity=0.104 Sum_probs=132.1
Q ss_pred ccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHH
Q 008235 397 SACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHI 471 (573)
Q Consensus 397 ~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~ 471 (573)
..+|.|.++.++ ...|...|.++|... . ..++||||+++..++.++..|...|+.+..+ ||+ +..+
T Consensus 3 ~~~i~q~~~~~~-~~~K~~~L~~ll~~~----~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~-hg~~~~~~r~~~ 73 (172)
T 1t5i_A 3 LHGLQQYYVKLK-DNEKNRKLFDLLDVL----E---FNQVVIFVKSVQRCIALAQLLVEQNFPAIAI-HRGMPQEERLSR 73 (172)
T ss_dssp --CCEEEEEECC-GGGHHHHHHHHHHHS----C---CSSEEEECSSHHHHHHHHHHHHHTTCCEEEE-CTTSCHHHHHHH
T ss_pred cCCeEEEEEECC-hHHHHHHHHHHHHhC----C---CCcEEEEECCHHHHHHHHHHHHhcCCCEEEE-ECCCCHHHHHHH
Confidence 457999999997 678998888888764 2 5799999999999999999999999999864 765 4458
Q ss_pred HHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccc-cHHHHHHHHHH
Q 008235 472 KNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKD-DAAHAGQMIEI 550 (573)
Q Consensus 472 l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~-d~~~~~~l~~~ 550 (573)
++.| ++|...++++ +|+. .+|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++. +...+..+.+.
T Consensus 74 ~~~f-~~g~~~vLva-T~~~-~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~ 150 (172)
T 1t5i_A 74 YQQF-KDFQRRILVA-TNLF-GRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDR 150 (172)
T ss_dssp HHHH-HTTSCSEEEE-SSCC-STTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHH-HCCCCcEEEE-CCch-hcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHH
Confidence 9999 8999999877 5777 48999999999999999999999999999999999999999999875 67889999998
Q ss_pred HHHcCCCCCHHHH
Q 008235 551 LEQCGQVVPDALR 563 (573)
Q Consensus 551 l~~~~~~vp~~l~ 563 (573)
+.....++|.++.
T Consensus 151 ~~~~~~~~~~~~~ 163 (172)
T 1t5i_A 151 FEVNISELPDEID 163 (172)
T ss_dssp HCCCEEECC----
T ss_pred HhcchhhCChhhc
Confidence 8888888887753
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.5e-23 Score=195.53 Aligned_cols=154 Identities=10% Similarity=0.119 Sum_probs=128.3
Q ss_pred ccccceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HH
Q 008235 395 SQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VS 469 (573)
Q Consensus 395 ~~~~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~ 469 (573)
.+..+|.|.++.|+....|+..|.+++... . ..++||||+++..|+.++..|...|+.+.. +||+ +.
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~----~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~-~~g~~~~~~R~ 74 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSI----T---IGQAIIFCQTRRNAKWLTVEMIQDGHQVSL-LSGELTVEQRA 74 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTS----C---CSEEEEECSCHHHHHHHHHHHHTTTCCEEE-ECSSCCHHHHH
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhC----C---CCCEEEEECCHHHHHHHHHHHHHcCCcEEE-EeCCCCHHHHH
Confidence 345689999999986666998777776542 2 579999999999999999999999999886 4775 55
Q ss_pred HHHHHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCC------CCHHHHHHHHhccccCCCcceEEEEeccccHHH
Q 008235 470 HIKNSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFI------ISMKNYVEILTSMARHTVSGILHSFFTKDDAAH 543 (573)
Q Consensus 470 ~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P------~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~ 543 (573)
.+++.| ++|...++++ +|+. .+|+|+|++++||+||+| .+..+|+||+||+||.|+.|.|++|+++.+...
T Consensus 75 ~~~~~f-~~g~~~vLva-T~~~-~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~ 151 (175)
T 2rb4_A 75 SIIQRF-RDGKEKVLIT-TNVC-ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPS 151 (175)
T ss_dssp HHHHHH-HTTSCSEEEE-CCSC-CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHH
T ss_pred HHHHHH-HcCCCeEEEE-ecch-hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHH
Confidence 689999 8999998877 5787 489999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCC
Q 008235 544 AGQMIEILEQCGQVVP 559 (573)
Q Consensus 544 ~~~l~~~l~~~~~~vp 559 (573)
+..+.+.+.....++|
T Consensus 152 ~~~i~~~~~~~~~~~~ 167 (175)
T 2rb4_A 152 LMKIQDHFNSSIKQLN 167 (175)
T ss_dssp HHHHHHHHTCCCEEEC
T ss_pred HHHHHHHhcCcccccC
Confidence 9998888765554443
No 83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.91 E-value=2.6e-24 Score=198.57 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=131.8
Q ss_pred cceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHH
Q 008235 398 ACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIK 472 (573)
Q Consensus 398 ~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l 472 (573)
.+|.|.++.++..+.|...|.+++... . ..++||||+++..++.++..|...++.+..+ ||+ +.+++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~----~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~r~~~~ 73 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI----S---VTQAVIFCNTRRKVEELTTKLRNDKFTVSAI-YSDLPQQERDTIM 73 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT----T---CSCEEEEESSHHHHHHHHHHHHHTTCCEEEE-CTTSCHHHHHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC----C---CCCEEEEECCHHHHHHHHHHHHHcCCCEEEE-ECCCCHHHHHHHH
Confidence 468999999975555998888888764 2 5799999999999999999999999998864 765 45689
Q ss_pred HHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHH
Q 008235 473 NSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILE 552 (573)
Q Consensus 473 ~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~ 552 (573)
+.| ++|...++++ +|+. .+|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++.|...+..+.+++.
T Consensus 74 ~~f-~~g~~~vlv~-T~~~-~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (165)
T 1fuk_A 74 KEF-RSGSSRILIS-TDLL-ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 150 (165)
T ss_dssp HHH-HTTSCSEEEE-EGGG-TTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSS
T ss_pred HHH-HcCCCEEEEE-cChh-hcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHc
Confidence 999 8999998877 6787 489999999999999999999999999999999999999999999999999999999998
Q ss_pred HcCCCCCHHHHHh
Q 008235 553 QCGQVVPDALRDL 565 (573)
Q Consensus 553 ~~~~~vp~~l~~~ 565 (573)
...+++|.++.++
T Consensus 151 ~~~~~~~~~~~~~ 163 (165)
T 1fuk_A 151 TQIEELPSDIATL 163 (165)
T ss_dssp CCCEECCSCCTTT
T ss_pred cCccccCccHHhh
Confidence 8888888765543
No 84
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.89 E-value=4.1e-23 Score=201.91 Aligned_cols=164 Identities=12% Similarity=0.038 Sum_probs=124.8
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-h-
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K- 280 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~- 280 (573)
++++|.++++.+..|+++++++||| ||||.+|.++++..+...... .+.++|+++|||+|+.|+.+.+... .
T Consensus 62 ~~~~q~~~i~~i~~g~~~~i~g~TG-sGKTt~~~~~~~~~~~~~~~~-----~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 62 VKKFESEILEAISQNSVVIIRGATG-CGKTTQVPQFILDDFIQNDRA-----AECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTT-SSHHHHHHHHHHHHHHHTTCG-----GGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHhcCCEEEEEeCCC-CCcHHhHHHHHhcchhhcCCC-----CceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 5899999999999999999999999 999999999999877654321 3568999999999999998887664 2
Q ss_pred cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccc-cC----cchHHHHHHhc
Q 008235 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL-SK----GDTLSLIRQSI 355 (573)
Q Consensus 281 ~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~l-l~----~~~l~~Il~~l 355 (573)
..+..+....... ......+++|+|+|||+|++++.. .++++++|||||||++ ++ ...++.++...
T Consensus 136 ~~~~~~g~~~~~~------~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~ 206 (235)
T 3llm_A 136 EPGKSCGYSVRFE------SILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY 206 (235)
T ss_dssp CTTSSEEEEETTE------EECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred ccCceEEEeechh------hccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC
Confidence 2243333221111 111112588999999999999977 4889999999999986 55 24556666655
Q ss_pred CCCCcEEEEeccCCccHHHHHHHHhcCCc
Q 008235 356 SGKPHTVVFNDCLTYTSVPAVQNLLLGSI 384 (573)
Q Consensus 356 ~~~~q~l~~SAT~~~~~~~~~~~~l~~~~ 384 (573)
++.|+++||||++... +++.|...|+
T Consensus 207 -~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 207 -PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp -TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred -CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 5799999999999865 6666666664
No 85
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.88 E-value=3.5e-22 Score=192.06 Aligned_cols=145 Identities=9% Similarity=0.056 Sum_probs=124.3
Q ss_pred eEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHHH
Q 008235 400 IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKNS 474 (573)
Q Consensus 400 i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~~ 474 (573)
+.+.++.+. ...|+..|.+++... ...++||||+++..++.++..|...|+.+..+ ||+ +..+++.
T Consensus 6 ~~~~~~~~~-~~~k~~~l~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~l-hg~~~~~~r~~~~~~ 76 (212)
T 3eaq_A 6 YEEEAVPAP-VRGRLEVLSDLLYVA-------SPDRAMVFTRTKAETEEIAQGLLRLGHPAQAL-HGDLSQGERERVLGA 76 (212)
T ss_dssp BCCEEEECC-TTSHHHHHHHHHHHH-------CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEE-CSSSCHHHHHHHHHH
T ss_pred eeeeEEeCC-HHHHHHHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEE-ECCCCHHHHHHHHHH
Confidence 456677775 678998888888753 15799999999999999999999999999874 765 4558999
Q ss_pred HHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHc
Q 008235 475 VEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQC 554 (573)
Q Consensus 475 F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~ 554 (573)
| ++|..+++++ ||++ .+|+|+|+|++||+||+|.+..+|+||+||+||.|+.|.|++|+++.|...+..+.+.++..
T Consensus 77 f-~~g~~~vlva-T~~~-~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 77 F-RQGEVRVLVA-TDVA-ARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp H-HSSSCCEEEE-CTTT-TCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred H-HCCCCeEEEe-cChh-hcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 9 9999999877 6788 48999999999999999999999999999999999999999999999999999998887654
Q ss_pred CC
Q 008235 555 GQ 556 (573)
Q Consensus 555 ~~ 556 (573)
..
T Consensus 154 ~~ 155 (212)
T 3eaq_A 154 FK 155 (212)
T ss_dssp CE
T ss_pred Ce
Confidence 43
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.87 E-value=3.4e-21 Score=210.74 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=88.7
Q ss_pred CHHHHHHHH----HHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 204 NSWGIEFWK----CYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 204 t~iQ~~aip----~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
+|+|.+++. .+..|+++++.|||| +|||++|++|++.. ++++||++||++|+.|+.+.+..+
T Consensus 9 r~~Q~~~~~~v~~~~~~~~~~~~~a~TG-tGKT~~~l~~~~~~-------------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 9 RQWQAEKLGEAINALKHGKTLLLNAKPG-LGKTVFVEVLGMQL-------------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEECCTT-SCHHHHHHHHHHHH-------------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEEcCCC-CcHHHHHHHHHHhC-------------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 999999754 456789999999999 99999999998742 568999999999999999888875
Q ss_pred hcCCcEEEEeCCCCCH--------H---------------------------------------HHHHHhhcCCCcEEEe
Q 008235 280 KAFGIHTVSLHPGAAI--------D---------------------------------------HQITGLRSCEPEFLVS 312 (573)
Q Consensus 280 ~~~~i~~~~~~gg~~~--------~---------------------------------------~~~~~l~~~~~~IlV~ 312 (573)
+++++.+.|.... . ...+.+.. +++|||+
T Consensus 75 ---~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~-~adiVV~ 150 (540)
T 2vl7_A 75 ---GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLK-DKDVIAM 150 (540)
T ss_dssp ---TCCEEEC---------------------------------------------------------CTTGG-GCSEEEE
T ss_pred ---CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhh-cCCEEEE
Confidence 5555554432210 0 00011123 5799999
Q ss_pred CHHHHHHHHHcCCC-------CCCCccEEEEeCccccc
Q 008235 313 TPERLLKLVSLKAI-------DVSGVSLLVVDRLDSLS 343 (573)
Q Consensus 313 TP~rL~~~l~~~~~-------~l~~l~~lViDEad~ll 343 (573)
|+..|++.+..+.+ .+....+|||||||+|.
T Consensus 151 n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 151 TYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp ETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred ChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 99999875543221 24567899999999983
No 87
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.87 E-value=9.2e-22 Score=198.42 Aligned_cols=145 Identities=9% Similarity=0.047 Sum_probs=123.6
Q ss_pred ceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHHH
Q 008235 399 CIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIKN 473 (573)
Q Consensus 399 ~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l~ 473 (573)
++.|.++.+. ...|+..|.+++.... +.++||||+++..++.++..|...|+.+..+ ||+ +..+++
T Consensus 2 ~v~~~~i~~~-~~~K~~~L~~ll~~~~-------~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~l-hg~l~~~~r~~~~~ 72 (300)
T 3i32_A 2 TYEEEAVPAP-VRGRLEVLSDLLYVAS-------PDRAMVFTRTKAETEEIAQGLLRLGHPAQAL-HGDMSQGERERVMG 72 (300)
T ss_dssp CSEEEEEECC-SSSHHHHHHHHHHHHC-------CSSEEEECSSHHHHHHHHHHHHTTTCCEEEE-CSCCCTHHHHHHHH
T ss_pred ceEEEEEECC-HHHHHHHHHHHHHhcC-------CCCEEEEECCHHHHHHHHHHHHhCCCCEEEE-eCCCCHHHHHHHHH
Confidence 4678899886 6789998888887642 5799999999999999999999999999874 765 455899
Q ss_pred HHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHH
Q 008235 474 SVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQ 553 (573)
Q Consensus 474 ~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~ 553 (573)
.| ++|..+++++ ||++ .+|+|+|+|++||+||+|.+..+|+||+|||||.|+.|.|++|+++.+...+..+.+.+..
T Consensus 73 ~f-~~g~~~vLVa-T~va-~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 73 AF-RQGEVRVLVA-TDVA-ARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp HH-HHTSCCEEEE-CSTT-TCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred Hh-hcCCceEEEE-echh-hcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 99 9999999888 6888 4899999999999999999999999999999999999999999999999999999888765
Q ss_pred cC
Q 008235 554 CG 555 (573)
Q Consensus 554 ~~ 555 (573)
..
T Consensus 150 ~~ 151 (300)
T 3i32_A 150 RF 151 (300)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=6.4e-22 Score=198.79 Aligned_cols=154 Identities=10% Similarity=0.007 Sum_probs=125.7
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA- 281 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~- 281 (573)
++|+|.++++.++.+++.++++||| +|||+++++++...+.. ...++|||+||++|+.|+.+.+..+..
T Consensus 114 l~~~Q~~ai~~~l~~~~~ll~~~tG-sGKT~~~~~~~~~~~~~---------~~~~~lil~Pt~~L~~q~~~~l~~~~~~ 183 (282)
T 1rif_A 114 PHWYQKDAVFEGLVNRRRILNLPTS-AGRSLIQALLARYYLEN---------YEGKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp CCHHHHHHHHHHHHHSEEEECCCTT-SCHHHHHHHHHHHHHHH---------CSSEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred ccHHHHHHHHHHHhcCCeEEEcCCC-CCcHHHHHHHHHHHHHc---------CCCeEEEEECCHHHHHHHHHHHHHhccc
Confidence 4999999999999998899999999 99999998888776542 234899999999999999999999844
Q ss_pred CCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCCCCcE
Q 008235 282 FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHT 361 (573)
Q Consensus 282 ~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~ 361 (573)
.++.++.++||..... .... +.+|+|+||+++... ....+.++++|||||||++. ...+..++..+....++
T Consensus 184 ~~~~~~~~~~~~~~~~---~~~~-~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~-~~~~~~il~~~~~~~~~ 255 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD---KYKN-DAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT-GKSISSIISGLNNCMFK 255 (282)
T ss_dssp CGGGEEECSTTCSSTT---CCCT-TCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC-HHHHHHHTTTCTTCCEE
T ss_pred ccceEEEEeCCCcchh---hhcc-CCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC-cccHHHHHHHhhcCCeE
Confidence 3677888888876433 1112 689999999987432 23456789999999999998 56888888888788999
Q ss_pred EEEeccCCccHHH
Q 008235 362 VVFNDCLTYTSVP 374 (573)
Q Consensus 362 l~~SAT~~~~~~~ 374 (573)
++||||++.....
T Consensus 256 l~lSATp~~~~~~ 268 (282)
T 1rif_A 256 FGLSGSLRDGKAN 268 (282)
T ss_dssp EEECSSCCTTSTT
T ss_pred EEEeCCCCCcchH
Confidence 9999999876433
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.75 E-value=8e-23 Score=189.58 Aligned_cols=148 Identities=17% Similarity=0.124 Sum_probs=127.1
Q ss_pred cceEEEEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC-----HHHHH
Q 008235 398 ACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI-----VSHIK 472 (573)
Q Consensus 398 ~~i~~~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~l 472 (573)
.+|.|.++.++....|...|.+++... . ..++||||+++..++.++..|...|+.+.. +||+ +.+++
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~----~---~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~-~~g~~~~~~r~~~~ 73 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQP----E---ATRSIVFVRKRERVHELANWLREAGINNCY-LEGEMVQGKRNEAI 73 (170)
Confidence 368889999875478988877777652 2 579999999999999999999999998876 4765 44589
Q ss_pred HHHHhcCCCCCeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHH
Q 008235 473 NSVEADGRKRPAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILE 552 (573)
Q Consensus 473 ~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~ 552 (573)
+.| ++|...+|++ +|+. .+|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.|...+..+.+.+.
T Consensus 74 ~~f-~~g~~~vLva-T~~~-~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
T 2yjt_D 74 KRL-TEGRVNVLVA-TDVA-ARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE 150 (170)
Confidence 999 8999888877 5777 489999999999999999999999999999999999999999999999999998888776
Q ss_pred HcCC
Q 008235 553 QCGQ 556 (573)
Q Consensus 553 ~~~~ 556 (573)
....
T Consensus 151 ~~~~ 154 (170)
T 2yjt_D 151 EPIK 154 (170)
Confidence 5443
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.84 E-value=6.5e-19 Score=193.28 Aligned_cols=127 Identities=11% Similarity=0.086 Sum_probs=99.8
Q ss_pred CCHHHHHHHH----HHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 203 VNSWGIEFWK----CYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 203 ~t~iQ~~aip----~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
+.|.|.+.+. .+..|+|+++.|||| ||||++|++|++. .++++||++||++|+.|+.+.+..
T Consensus 4 ~r~~Q~~~~~~v~~~l~~~~~~~~~a~TG-tGKT~~~l~p~l~-------------~~~~v~i~~pt~~l~~q~~~~~~~ 69 (551)
T 3crv_A 4 LRDWQEKLKDKVIEGLRNNFLVALNAPTG-SGKTLFSLLVSLE-------------VKPKVLFVVRTHNEFYPIYRDLTK 69 (551)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEECCTT-SSHHHHHHHHHHH-------------HCSEEEEEESSGGGHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCC-ccHHHHHHHHHHh-------------CCCeEEEEcCCHHHHHHHHHHHHH
Confidence 4999999665 456789999999999 9999999999996 156899999999999999999999
Q ss_pred hhc-CCcEEEEeCCCCCH---------------------------------HHHH------------------HHhhcCC
Q 008235 279 LKA-FGIHTVSLHPGAAI---------------------------------DHQI------------------TGLRSCE 306 (573)
Q Consensus 279 l~~-~~i~~~~~~gg~~~---------------------------------~~~~------------------~~l~~~~ 306 (573)
+.. .+++++.+.|+..+ ..+. +.+.. .
T Consensus 70 l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~-~ 148 (551)
T 3crv_A 70 IREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY-K 148 (551)
T ss_dssp CCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG-G
T ss_pred HhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh-c
Confidence 843 48888888774321 1221 22233 6
Q ss_pred CcEEEeCHHHHHHHHHcCCCCC-CCccEEEEeCcccccC
Q 008235 307 PEFLVSTPERLLKLVSLKAIDV-SGVSLLVVDRLDSLSK 344 (573)
Q Consensus 307 ~~IlV~TP~rL~~~l~~~~~~l-~~l~~lViDEad~ll~ 344 (573)
+||||+|++.|++...+..+.+ .....|||||||+|.+
T Consensus 149 adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 149 ADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp CSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred CCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 8999999999998765544433 4678999999998764
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.78 E-value=2.3e-18 Score=168.30 Aligned_cols=138 Identities=12% Similarity=0.015 Sum_probs=112.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh
Q 008235 201 LFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~ 280 (573)
+.++++|.++++.++.++++++++||| +|||++++.++... +.++||++||++|+.|+.+.+..|
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG-~GKT~~a~~~~~~~-------------~~~~liv~P~~~L~~q~~~~~~~~- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTG-SGKTHVAMAAINEL-------------STPTLIVVPTLALAEQWKERLGIF- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSS-TTHHHHHHHHHHHS-------------CSCEEEEESSHHHHHHHHHHHGGG-
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCC-CCHHHHHHHHHHHc-------------CCCEEEEeCCHHHHHHHHHHHHhC-
Confidence 345999999999999999999999999 99999998876641 347999999999999999999885
Q ss_pred cCCcE-EEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCCCC
Q 008235 281 AFGIH-TVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359 (573)
Q Consensus 281 ~~~i~-~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~ 359 (573)
++. +..+.|+.. . ..+|+|+||+.+...+.. ...++++|||||||++.+ ..+..++..++ ..
T Consensus 157 --~~~~v~~~~g~~~---------~-~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~-~~~~~i~~~~~-~~ 219 (237)
T 2fz4_A 157 --GEEYVGEFSGRIK---------E-LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPA-ESYVQIAQMSI-AP 219 (237)
T ss_dssp --CGGGEEEESSSCB---------C-CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCT-TTHHHHHHTCC-CS
T ss_pred --CCCeEEEEeCCCC---------C-cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCC-hHHHHHHHhcc-CC
Confidence 777 777877653 1 579999999998766542 124589999999999984 44566776665 67
Q ss_pred cEEEEeccCCc
Q 008235 360 HTVVFNDCLTY 370 (573)
Q Consensus 360 q~l~~SAT~~~ 370 (573)
+++++|||++.
T Consensus 220 ~~l~LSATp~r 230 (237)
T 2fz4_A 220 FRLGLTATFER 230 (237)
T ss_dssp EEEEEEESCC-
T ss_pred EEEEEecCCCC
Confidence 89999999875
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.68 E-value=7e-15 Score=162.79 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=67.2
Q ss_pred CCHHHHHHH----HHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 203 VNSWGIEFW----KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 203 ~t~iQ~~ai----p~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
+.|.|.+.+ ..+.+|+|+++.|||| ||||++|++|++.++... +++++|++||++|+.|+.+.+..
T Consensus 4 ~R~~Q~~~~~~v~~~l~~~~~~~~~apTG-tGKT~a~l~p~l~~~~~~---------~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 4 NRQYQVEAIDFLRSSLQKSYGVALESPTG-SGKTIMALKSALQYSSER---------KLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp -CHHHHHHHHHHHHHHHHSSEEEEECCTT-SCHHHHHHHHHHHHHHHH---------TCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCEEEECCCC-CCHHHHHHHHHHHhhhhc---------CCeEEEECCCHHHHHHHHHHHHH
Confidence 489998876 4567899999999999 999999999999987642 56899999999999999999998
Q ss_pred hhc-CCcEEEEeCCC
Q 008235 279 LKA-FGIHTVSLHPG 292 (573)
Q Consensus 279 l~~-~~i~~~~~~gg 292 (573)
+.. .+++++.+.|+
T Consensus 74 l~~~~~~~~~~l~gr 88 (620)
T 4a15_A 74 LSSTMKIRAIPMQGR 88 (620)
T ss_dssp HHHHSCCCEEECCCH
T ss_pred HhhccCeEEEEEECC
Confidence 833 46777766664
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.50 E-value=6.1e-14 Score=139.40 Aligned_cols=130 Identities=8% Similarity=0.008 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC-CCCeeeecCCC-----HHHHHHHHHhcC-CCC
Q 008235 410 DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK-GYSISTGSNCI-----VSHIKNSVEADG-RKR 482 (573)
Q Consensus 410 ~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~-g~~~~~~~~~~-----~~~~l~~F~~~g-~~~ 482 (573)
...|+..|.++|..+... +.++||||++...++.|...|... |+.+..+ ||+ |.++++.| +++ ...
T Consensus 94 ~s~K~~~L~~ll~~~~~~-----~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l-~G~~~~~~R~~~i~~F-~~~~~~~ 166 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDE-----GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFL-YGELSKKERDDIISKF-QNNPSVK 166 (271)
T ss_dssp TCHHHHHHHHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHHHCSCCCEE-CTTSCHHHHHHHHHHH-HHCTTCC
T ss_pred cCHHHHHHHHHHHHHHhC-----CCeEEEEeccHHHHHHHHHHHHHhcCCcEEEE-ECCCCHHHHHHHHHHh-cCCCCCC
Confidence 567999999999887654 459999999999999999999884 8888764 664 55689999 666 555
Q ss_pred CeEEEEeccccCCCccCCCCEEEeCCCCCCHHHHHHHHhccccCCCcceE--EEEeccc--cHHHHHHH
Q 008235 483 PAVSMIDKDHISTAELEEYEVVIVPDFIISMKNYVEILTSMARHTVSGIL--HSFFTKD--DAAHAGQM 547 (573)
Q Consensus 483 ~l~~lvd~~s~rGlDip~v~~VI~~d~P~s~~~YiqR~GR~gR~g~~G~~--i~~~~~~--d~~~~~~l 547 (573)
++++.+++.+ +|||++++++||+||+|.++..|+||+||++|.|+.+.+ +.|++.. |...+..+
T Consensus 167 v~L~st~~~g-~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~ 234 (271)
T 1z5z_A 167 FIVLSVKAGG-FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLL 234 (271)
T ss_dssp EEEEECCTTC-CCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHH
T ss_pred EEEEehhhhc-CCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHH
Confidence 3333246663 799999999999999999999999999999999987654 6667665 44444433
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.08 E-value=2.2e-10 Score=126.57 Aligned_cols=144 Identities=11% Similarity=0.096 Sum_probs=95.6
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHH--HHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-h
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQ--IAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K 280 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKT--laf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~ 280 (573)
+++|..|++.++.++++++.+++| |||| ++++++++..+... .+.++++++||.++|.++.+.+..+ .
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pG-TGKTt~l~~ll~~l~~~~~~--------~~~~vll~APTg~AA~~L~e~~~~~~~ 221 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPG-TGKTTTVAKLLAALIQMADG--------ERCRIRLAAPTGKAAARLTESLGKALR 221 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTT-STHHHHHHHHHHHHHHTCSS--------CCCCEEEEBSSHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCC-CCHHHHHHHHHHHHHHhhhc--------CCCeEEEEeCChhHHHHHHHHHHHHHh
Confidence 789999999999999999999999 9999 77888887654211 3678999999999999999888764 2
Q ss_pred cCCcEEEEeCCCCCHHHHHHHhhcCCCc-EEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCCCC
Q 008235 281 AFGIHTVSLHPGAAIDHQITGLRSCEPE-FLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359 (573)
Q Consensus 281 ~~~i~~~~~~gg~~~~~~~~~l~~~~~~-IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~ 359 (573)
.+++..... .+... +.. ..+ ++-.+|+.. . +.........+++||||||+ |++...+..|+..++...
T Consensus 222 ~l~l~~~~~-~~~~~--~~~-----Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~~~~~~~Ll~~l~~~~ 290 (608)
T 1w36_D 222 QLPLTDEQK-KRIPE--DAS-----TLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MIDLPMMSRLIDALPDHA 290 (608)
T ss_dssp HSSCCSCCC-CSCSC--CCB-----TTTSCC-------------CTTSCCSCSEEEECSGG-GCBHHHHHHHHHTCCTTC
T ss_pred cCCCCHHHH-hccch--hhh-----hhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCCHHHHHHHHHhCCCCC
Confidence 233321111 00000 000 111 222233321 1 11222223378999999999 777778899999999999
Q ss_pred cEEEEecc
Q 008235 360 HTVVFNDC 367 (573)
Q Consensus 360 q~l~~SAT 367 (573)
|++++.-.
T Consensus 291 ~liLvGD~ 298 (608)
T 1w36_D 291 RVIFLGDR 298 (608)
T ss_dssp EEEEEECT
T ss_pred EEEEEcch
Confidence 99998643
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.00 E-value=3.3e-05 Score=84.41 Aligned_cols=127 Identities=13% Similarity=0.103 Sum_probs=84.5
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhh
Q 008235 201 LFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~ 280 (573)
+.+++.|..++..++.++.+++.+|.| ||||... ..++..+.. .+..+++++||...|..+.+.+.
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pG-TGKTt~i-~~l~~~l~~---------~g~~Vl~~ApT~~Aa~~L~e~~~--- 253 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPG-TGKSTTT-KAVADLAES---------LGLEVGLCAPTGKAARRLGEVTG--- 253 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTT-SCHHHHH-HHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHHT---
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCC-CCHHHHH-HHHHHHHHh---------cCCeEEEecCcHHHHHHhHhhhc---
Confidence 446999999999999999999999999 9999652 334433332 36689999999999887776432
Q ss_pred cCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCCCCc
Q 008235 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPH 360 (573)
Q Consensus 281 ~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q 360 (573)
.....++ +.+.. .+. . +..........++||||||+ |++...+..++..++...+
T Consensus 254 ---~~a~Tih---------~ll~~-~~~-------~----~~~~~~~~~~~dvlIIDEas-ml~~~~~~~Ll~~~~~~~~ 308 (574)
T 3e1s_A 254 ---RTASTVH---------RLLGY-GPQ-------G----FRHNHLEPAPYDLLIVDEVS-MMGDALMLSLLAAVPPGAR 308 (574)
T ss_dssp ---SCEEEHH---------HHTTE-ETT-------E----ESCSSSSCCSCSEEEECCGG-GCCHHHHHHHHTTSCTTCE
T ss_pred ---ccHHHHH---------HHHcC-Ccc-------h----hhhhhcccccCCEEEEcCcc-CCCHHHHHHHHHhCcCCCE
Confidence 1111111 01110 000 0 01111233467899999998 5557788888998888888
Q ss_pred EEEEec
Q 008235 361 TVVFND 366 (573)
Q Consensus 361 ~l~~SA 366 (573)
++++.-
T Consensus 309 lilvGD 314 (574)
T 3e1s_A 309 VLLVGD 314 (574)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 887743
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.94 E-value=7.6e-05 Score=82.61 Aligned_cols=67 Identities=9% Similarity=-0.090 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
+++.|..|+..++.+.-+++.+|.| ||||.+. .-++..+... .+.++|+++||...|.++.+.+...
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppG-TGKT~~~-~~~i~~l~~~--------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPG-TGKTVTS-ATIVYHLARQ--------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTT-SCHHHHH-HHHHHHHHTS--------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCC-CCHHHHH-HHHHHHHHHc--------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 5899999999999877789999999 9999763 4455555432 2568999999999999998877654
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00012 Score=83.04 Aligned_cols=67 Identities=10% Similarity=-0.084 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
+++.|.+|+..++.+.-+++.+|.| ||||.+. .-++.++... .+.++|+++||..-|.++.+.+..+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppG-TGKT~~i-~~~i~~l~~~--------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPG-TGKTVTS-ATIVYHLSKI--------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTT-SSHHHHH-HHHHHHHHHH--------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCC-CCHHHHH-HHHHHHHHhC--------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 5799999999998877789999999 9999763 4445555432 2558999999999999998887664
No 98
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.80 E-value=0.00016 Score=81.90 Aligned_cols=68 Identities=9% Similarity=-0.111 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 202 FVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 202 ~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.+++.|.+|+..++.+.-+++.+|.| ||||.+. .-++..+... .+.++|+++||..-|.++.+.+...
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppG-TGKT~ti-~~~i~~l~~~--------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPG-TGKTVTS-ATIVYHLARQ--------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTT-SCHHHHH-HHHHHHHHTT--------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCC-CCHHHHH-HHHHHHHHHc--------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 35899999999999887789999999 9999763 4455555532 2568999999999999988877654
No 99
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.71 E-value=0.0032 Score=69.77 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhc-
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA- 281 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~- 281 (573)
+++-|.+++. ..+..+++.|+.| ||||.+.+- -+.++..... ...-++|++++|+..|.++.+.+..+..
T Consensus 10 Ln~~Q~~av~--~~~~~~lV~a~aG-sGKT~~l~~-ri~~l~~~~~-----~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 10 LNDKQREAVA--APRSNLLVLAGAG-SGKTRVLVH-RIAWLMSVEN-----CSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp CCHHHHHHHT--CCSSCEEEEECTT-SCHHHHHHH-HHHHHHHTSC-----CCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHh--CCCCCEEEEECCC-CCHHHHHHH-HHHHHHHhCC-----CChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 4999999997 2357899999999 999977443 3333433210 1234799999999999999998887621
Q ss_pred --CCcEEEEeC
Q 008235 282 --FGIHTVSLH 290 (573)
Q Consensus 282 --~~i~~~~~~ 290 (573)
.++.+..++
T Consensus 81 ~~~~~~v~Tfh 91 (647)
T 3lfu_A 81 SQGGMWVGTFH 91 (647)
T ss_dssp CCTTCEEEEHH
T ss_pred ccCCcEEEcHH
Confidence 355555543
No 100
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.70 E-value=0.00016 Score=77.01 Aligned_cols=136 Identities=7% Similarity=0.035 Sum_probs=82.7
Q ss_pred hCCCccCCCCCCCHHHHHHHHHHhcC-----CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccH
Q 008235 192 HDGVEQDNPLFVNSWGIEFWKCYSSA-----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQ 266 (573)
Q Consensus 192 ~~g~~~p~~~~~t~iQ~~aip~il~g-----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 266 (573)
.+.|..+ ++-|.+++..++.. ..+++.++.| ||||.. +..++..+.... ...+++++||.
T Consensus 20 p~~~~~L-----n~~Q~~av~~~~~~i~~~~~~~li~G~aG-TGKT~l-l~~~~~~l~~~~--------~~~il~~a~T~ 84 (459)
T 3upu_A 20 HMTFDDL-----TEGQKNAFNIVMKAIKEKKHHVTINGPAG-TGATTL-TKFIIEALISTG--------ETGIILAAPTH 84 (459)
T ss_dssp -CCSSCC-----CHHHHHHHHHHHHHHHSSSCEEEEECCTT-SCHHHH-HHHHHHHHHHTT--------CCCEEEEESSH
T ss_pred CCccccC-----CHHHHHHHHHHHHHHhcCCCEEEEEeCCC-CCHHHH-HHHHHHHHHhcC--------CceEEEecCcH
Confidence 3566666 99999999877542 3889999999 999964 344555555431 23689999999
Q ss_pred HHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHH-hhc-CCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccC
Q 008235 267 EKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITG-LRS-CEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (573)
Q Consensus 267 eLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~-l~~-~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~ 344 (573)
..|..+.+.+. +.+..++. .... ... .....+.. .....+...++|||||++. ++
T Consensus 85 ~Aa~~l~~~~~------~~~~T~h~------~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~-~~ 141 (459)
T 3upu_A 85 AAKKILSKLSG------KEASTIHS------ILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSM-YD 141 (459)
T ss_dssp HHHHHHHHHHS------SCEEEHHH------HHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGG-CC
T ss_pred HHHHHHHhhhc------cchhhHHH------HhccCcccccccchhcc----------cccccccCCCEEEEECchh-CC
Confidence 88877766542 21222110 0000 000 00111111 1223456789999999994 44
Q ss_pred cchHHHHHHhcCCCCcEEEEe
Q 008235 345 GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 345 ~~~l~~Il~~l~~~~q~l~~S 365 (573)
...+..++..++...+++++.
T Consensus 142 ~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 142 RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHHHhccCCCEEEEEC
Confidence 667777777777666666664
No 101
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.57 E-value=0.00016 Score=80.28 Aligned_cols=66 Identities=12% Similarity=-0.010 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHhcCCcE-EEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 203 VNSWGIEFWKCYSSAKDI-LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dv-l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
+++-|.+|+..++..+++ |++.|.| ||||.+. +-++.++.. .+.++|+++||..=|.++.+.+...
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPG-TGKT~ti-~~~I~~l~~---------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPG-TGKTTTV-VEIILQAVK---------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTT-SCHHHHH-HHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCC-CCHHHHH-HHHHHHHHh---------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 578999999999988875 6778999 9999773 344444543 3668999999999888887766543
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.35 E-value=0.0024 Score=65.76 Aligned_cols=141 Identities=11% Similarity=0.103 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-
Q 008235 201 LFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL- 279 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l- 279 (573)
+.++|+|...+..+...+-+++..+-+ .|||.+...-++..+... .+..+++++||++-|..+.+.+..+
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq-~GKT~l~a~~~l~~a~~~--------~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQ-LGKTTVVAIFLAHFVCFN--------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSS-SCHHHHHHHHHHHHHHSS--------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCc-CChhHHHHHHHHHHHHhC--------CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 567999999998775557788899999 999988766665544432 3668999999999998888777765
Q ss_pred hcCC--cE--EEEeCCCCCHHHHHHHhhcCCCcEEE--eCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-cchHHHHH
Q 008235 280 KAFG--IH--TVSLHPGAAIDHQITGLRSCEPEFLV--STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIR 352 (573)
Q Consensus 280 ~~~~--i~--~~~~~gg~~~~~~~~~l~~~~~~IlV--~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il 352 (573)
.... ++ +.... ... -.+.+ |..|.+ ++|+.+ . =.++.++|+||+|.+-+ ...+..+.
T Consensus 233 ~~~P~ll~~~~~~~~-~~~-----I~f~n-Gs~i~~lsa~~~sl----r-----G~~~~~viiDE~a~~~~~~el~~al~ 296 (385)
T 2o0j_A 233 ELLPDFLQPGIVEWN-KGS-----IELDN-GSSIGAYASSPDAV----R-----GNSFAMIYIEDCAFIPNFHDSWLAIQ 296 (385)
T ss_dssp HHSCTTTSCCEEEEC-SSE-----EEETT-SCEEEEEECSHHHH----H-----TSCCSEEEEESGGGSTTHHHHHHHHH
T ss_pred HhChHhhhhhhccCC-ccE-----EEeCC-CCEEEEEECCCCCc----c-----CCCCCEEEechhhhcCCCHHHHHHHH
Confidence 1111 11 11110 000 01122 333332 335443 1 13467999999998765 33444444
Q ss_pred HhcC--CCCcEEEEec
Q 008235 353 QSIS--GKPHTVVFND 366 (573)
Q Consensus 353 ~~l~--~~~q~l~~SA 366 (573)
..+. .+.+++++|.
T Consensus 297 ~~ls~~~~~kiiiiST 312 (385)
T 2o0j_A 297 PVISSGRRSKIIITTT 312 (385)
T ss_dssp HHHHSTTCCEEEEEEC
T ss_pred HHhhcCCCCcEEEEeC
Confidence 4332 4556655543
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.03 E-value=0.0087 Score=65.56 Aligned_cols=141 Identities=11% Similarity=0.100 Sum_probs=86.5
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 200 PLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 200 ~~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
++.++|+|...+..+...+-+++..+-| +|||.+...-++..+... .+..++++.||++.|..+...++.+
T Consensus 161 ~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq-~GKS~~~a~~~l~~~~~~--------~~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQ-LGKTTVVAIFLAHFVCFN--------KDKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp BCCCCHHHHHHHHHHHHCSEEEEEECSS-SCHHHHHHHHHHHHHHTS--------SSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHhhccccEEEEEEcCc-cChHHHHHHHHHHHHHhC--------CCCeEEEEECCHHHHHHHHHHHHHH
Confidence 3567999999998775567889999999 999988766555555433 3568999999999999988877765
Q ss_pred -hcCC--cE--EEEeCCCCCHHHHHHHhhcCCCcEEE--eCHHHHHHHHHcCCCCCCCccEEEEeCcccccC-cchHHHH
Q 008235 280 -KAFG--IH--TVSLHPGAAIDHQITGLRSCEPEFLV--STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLI 351 (573)
Q Consensus 280 -~~~~--i~--~~~~~gg~~~~~~~~~l~~~~~~IlV--~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~-~~~l~~I 351 (573)
.... +. ..... .. . -.+.+ |..|.+ +.|+.+.- .+..++|+||+|.+-+ ...+..+
T Consensus 232 i~~~p~~~~~~~~~~~-~~----~-i~~~n-Gs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~~~~l~~~~ 295 (592)
T 3cpe_A 232 IELLPDFLQPGIVEWN-KG----S-IELDN-GSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNFHDSWLAI 295 (592)
T ss_dssp HTTSCTTTSCCEEEEC-SS----E-EEETT-SCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTTHHHHHHHH
T ss_pred HHhChHhhccccccCC-cc----E-EEecC-CCEEEEEeCCCCCccC---------CCcceEEEehhccCCchhHHHHHH
Confidence 2221 11 11000 00 0 01122 333333 33554421 1367999999998765 3334444
Q ss_pred HHhcC--CCCcEEEEe
Q 008235 352 RQSIS--GKPHTVVFN 365 (573)
Q Consensus 352 l~~l~--~~~q~l~~S 365 (573)
...+. .+.+++++|
T Consensus 296 ~~~l~~~~~~~ii~is 311 (592)
T 3cpe_A 296 QPVISSGRRSKIIITT 311 (592)
T ss_dssp HHHHSSSSCCEEEEEE
T ss_pred HHHhccCCCceEEEEe
Confidence 44443 345655554
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.25 E-value=0.043 Score=49.69 Aligned_cols=19 Identities=5% Similarity=-0.172 Sum_probs=16.0
Q ss_pred cCCcEEEEeCCCchhHHHHH
Q 008235 216 SAKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf 235 (573)
.|+.+++..|+| +|||...
T Consensus 37 ~g~~~~l~G~~G-~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPG-VGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSS-SSHHHHH
T ss_pred CCCEEEEECCCC-CCHHHHH
Confidence 478899999999 9999653
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.09 E-value=0.018 Score=60.20 Aligned_cols=107 Identities=14% Similarity=0.056 Sum_probs=64.9
Q ss_pred cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH
Q 008235 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ 298 (573)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~ 298 (573)
=.++.++.| +|||..+. +.+. . ...+|++||++++..+.+.+... +.. .
T Consensus 163 v~~I~G~aG-sGKTt~I~----~~~~-~----------~~~lVlTpT~~aa~~l~~kl~~~---~~~-----~------- 211 (446)
T 3vkw_A 163 VVLVDGVPG-CGKTKEIL----SRVN-F----------EEDLILVPGRQAAEMIRRRANAS---GII-----V------- 211 (446)
T ss_dssp EEEEEECTT-SCHHHHHH----HHCC-T----------TTCEEEESCHHHHHHHHHHHTTT---SCC-----C-------
T ss_pred EEEEEcCCC-CCHHHHHH----HHhc-c----------CCeEEEeCCHHHHHHHHHHhhhc---Ccc-----c-------
Confidence 346778999 99997632 2111 1 13599999999999888876543 110 0
Q ss_pred HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCCCCcEEEEecc
Q 008235 299 ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDC 367 (573)
Q Consensus 299 ~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~l~~SAT 367 (573)
....-|.|-++++ +.......-..++||||||- |++...+..++..++. .+++++.-.
T Consensus 212 -------~~~~~V~T~dsfL--~~~~~~~~~~~d~liiDE~s-m~~~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 212 -------ATKDNVRTVDSFL--MNYGKGARCQFKRLFIDEGL-MLHTGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp -------CCTTTEEEHHHHH--HTTTSSCCCCCSEEEEETGG-GSCHHHHHHHHHHTTC-SEEEEEECT
T ss_pred -------cccceEEEeHHhh--cCCCCCCCCcCCEEEEeCcc-cCCHHHHHHHHHhCCC-CEEEEecCc
Confidence 1122355655432 22222222358899999997 6666667677766654 666666544
No 106
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.12 E-value=0.15 Score=45.44 Aligned_cols=74 Identities=18% Similarity=0.322 Sum_probs=56.6
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.|+|+.-+..+.+.+... |+.+..++|+.+..... ..+..+..+|||+|. .+ ...+++..++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~~~ 105 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL---GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIENIS 105 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSCCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhcCC
Confidence 457999999999999998887765 88999999998865543 444556789999993 22 3457788888
Q ss_pred EEEEeC
Q 008235 333 LLVVDR 338 (573)
Q Consensus 333 ~lViDE 338 (573)
++|.-.
T Consensus 106 ~Vi~~~ 111 (163)
T 2hjv_A 106 LVINYD 111 (163)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888643
No 107
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.01 E-value=0.027 Score=53.37 Aligned_cols=111 Identities=6% Similarity=-0.018 Sum_probs=59.5
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcCCcEEEEeCCCCCH
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAI 295 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~~i~~~~~~gg~~~ 295 (573)
|.=+++..++| +|||.+. +-++.++.. .+.+++++.|...= +-...+ ..+|+.
T Consensus 12 G~i~litG~mG-sGKTT~l-l~~~~r~~~---------~g~kVli~~~~~d~-----r~~~~i~srlG~~---------- 65 (223)
T 2b8t_A 12 GWIEFITGPMF-AGKTAEL-IRRLHRLEY---------ADVKYLVFKPKIDT-----RSIRNIQSRTGTS---------- 65 (223)
T ss_dssp CEEEEEECSTT-SCHHHHH-HHHHHHHHH---------TTCCEEEEEECCCG-----GGCSSCCCCCCCS----------
T ss_pred cEEEEEECCCC-CcHHHHH-HHHHHHHHh---------cCCEEEEEEeccCc-----hHHHHHHHhcCCC----------
Confidence 45566778889 9999763 444444433 35678888775310 000011 111211
Q ss_pred HHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCCCCcEEEEe
Q 008235 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 296 ~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~l~~S 365 (573)
-..+-+.+...+++.+.... .-...++||||||+.+. .+.++.+......+.+++++.
T Consensus 66 ----------~~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~-~~~ve~l~~L~~~gi~Vil~G 123 (223)
T 2b8t_A 66 ----------LPSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD-DRICEVANILAENGFVVIISG 123 (223)
T ss_dssp ----------SCCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC-THHHHHHHHHHHTTCEEEEEC
T ss_pred ----------ccccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc-HHHHHHHHHHHhCCCeEEEEe
Confidence 11234566777777776532 23457899999998654 333333322222355555544
No 108
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=94.81 E-value=0.21 Score=45.79 Aligned_cols=72 Identities=18% Similarity=0.360 Sum_probs=55.8
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.|+|++-+..+...+... ++.+..++|+.+..... ..++.+..+|||+|. .+. ..+++..++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~---g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~Gldi~~v~ 124 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK---GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS-KGLDFPAIQ 124 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH---TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH-TTCCCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh-cCCCcccCC
Confidence 457999999999999998888766 88999999998865443 444556789999993 333 346788888
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||.
T Consensus 125 ~VI~ 128 (191)
T 2p6n_A 125 HVIN 128 (191)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 109
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.31 Score=48.63 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=25.1
Q ss_pred CCccEEEEeCcccccCcchHHHHHHhc---CCCCcEEEEeccCC
Q 008235 329 SGVSLLVVDRLDSLSKGDTLSLIRQSI---SGKPHTVVFNDCLT 369 (573)
Q Consensus 329 ~~l~~lViDEad~ll~~~~l~~Il~~l---~~~~q~l~~SAT~~ 369 (573)
...-+|||||+|+|.+.+.+..+++.. ..+.-+++.++|+.
T Consensus 131 ~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 345689999999998644444444422 12334556677764
No 110
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=94.58 E-value=0.18 Score=45.45 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=56.1
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.|+|+..+..+...+... |+.+..++|+.+..... ..++.+..+|||+|. . -...+++..+.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~-~~~Gid~~~~~ 104 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD---GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----V-CARGIDVKQVT 104 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT---TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----S-CCTTTCCTTEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----c-hhcCCCcccCC
Confidence 558999999999999988887765 88899999998865543 445566789999993 1 23457788898
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||.
T Consensus 105 ~Vi~ 108 (175)
T 2rb4_A 105 IVVN 108 (175)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 111
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=94.55 E-value=0.22 Score=49.59 Aligned_cols=119 Identities=8% Similarity=0.039 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHHHHHHHHhcCCCCCeEEEEe
Q 008235 410 DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRPAVSMID 489 (573)
Q Consensus 410 ~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~l~~F~~~g~~~~l~~lvd 489 (573)
...|+..|-.+|..+... +.++|||++.....+-+-.+|...++....+ .|..... +. +.......+.|+
T Consensus 107 ~SGKf~~L~~LL~~l~~~-----~~kVLIfsq~t~~LDilE~~l~~~~~~y~Rl-DG~~~~~--~~-k~~~~~~~i~Ll- 176 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEY-----ETETAIVCRPGRTMDLLEALLLGNKVHIKRY-DGHSIKS--AA-AANDFSCTVHLF- 176 (328)
T ss_dssp TCHHHHHHHHHHHHHTTS-----CEEEEEEECSTHHHHHHHHHHTTSSCEEEES-SSCCC----------CCSEEEEEE-
T ss_pred cCccHHHHHHHHHHHHhC-----CCEEEEEECChhHHHHHHHHHhcCCCceEeC-CCCchhh--hh-hcccCCceEEEE-
Confidence 467999999999887654 4699999999999999999999999988764 5542221 11 111223333343
Q ss_pred ccccC--CCc-----cCCCCEEEeCCCCCCHHH-HHHHHhccccCC----CcceEEEEeccc
Q 008235 490 KDHIS--TAE-----LEEYEVVIVPDFIISMKN-YVEILTSMARHT----VSGILHSFFTKD 539 (573)
Q Consensus 490 ~~s~r--GlD-----ip~v~~VI~~d~P~s~~~-YiqR~GR~gR~g----~~G~~i~~~~~~ 539 (573)
+++. |++ ....+.||.||.-.++.. .+|.+-|+-|.| +.-.++-|++..
T Consensus 177 -tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 177 -SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp -ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred -ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 2223 454 578899999998766654 577666666652 445677777755
No 112
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.50 E-value=0.19 Score=46.92 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=56.2
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+..+||.|+|++-+..+.+.+... |+.+..++|+.+...+. ..++.+..+|+|+|. +-...+++.+++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi~~v~ 101 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL---GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDIPQVD 101 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH---TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSCCCBS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc---CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCCccCc
Confidence 457999999999999888887765 88999999999876554 344566789999993 223457888888
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 113
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.48 E-value=0.017 Score=52.96 Aligned_cols=38 Identities=5% Similarity=-0.195 Sum_probs=25.4
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEccc
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 265 (573)
|+=.++..|.| +|||... +-++..+.. .+..++++.|.
T Consensus 3 g~i~vi~G~~g-sGKTT~l-l~~~~~~~~---------~g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMY-SGKTTEL-LSFVEIYKL---------GKKKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTT-SSHHHHH-HHHHHHHHH---------TTCEEEEEEEC
T ss_pred cEEEEEECCCC-CCHHHHH-HHHHHHHHH---------CCCeEEEEeec
Confidence 45567888999 9999764 333433332 25578888887
No 114
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.41 E-value=0.12 Score=47.50 Aligned_cols=106 Identities=5% Similarity=0.063 Sum_probs=54.4
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hcCCcEEEEeCCCCCH
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAI 295 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~~i~~~~~~gg~~~ 295 (573)
|+=.++..|.| ||||.+. +-++.+... .+.+++++.|... ...-...+ +..|+..
T Consensus 8 g~i~v~~G~mg-sGKTT~l-l~~a~r~~~---------~g~kV~v~k~~~d----~r~~~~~i~s~~g~~~--------- 63 (191)
T 1xx6_A 8 GWVEVIVGPMY-SGKSEEL-IRRIRRAKI---------AKQKIQVFKPEID----NRYSKEDVVSHMGEKE--------- 63 (191)
T ss_dssp CEEEEEECSTT-SSHHHHH-HHHHHHHHH---------TTCCEEEEEEC-----------CEEECTTSCEE---------
T ss_pred CEEEEEECCCC-CcHHHHH-HHHHHHHHH---------CCCEEEEEEeccC----ccchHHHHHhhcCCce---------
Confidence 44456678889 9999764 444444432 3678999988732 11000111 1112221
Q ss_pred HHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCCCCcEEEE
Q 008235 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVF 364 (573)
Q Consensus 296 ~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~l~~ 364 (573)
..+.+..+..+++.+. ...++|+||||+.+- .+.+..+....+.+..++++
T Consensus 64 -----------~a~~~~~~~~i~~~~~------~~~dvViIDEaqfl~-~~~v~~l~~l~~~~~~Vi~~ 114 (191)
T 1xx6_A 64 -----------QAVAIKNSREILKYFE------EDTEVIAIDEVQFFD-DEIVEIVNKIAESGRRVICA 114 (191)
T ss_dssp -----------ECEEESSSTHHHHHCC------TTCSEEEECSGGGSC-THHHHHHHHHHHTTCEEEEE
T ss_pred -----------eeEeeCCHHHHHHHHh------ccCCEEEEECCCCCC-HHHHHHHHHHHhCCCEEEEE
Confidence 1233444444444332 247899999999753 33344443333445555554
No 115
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.28 E-value=0.26 Score=43.80 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=56.2
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.|+|++-+..+...+... ++.+..++|+.+..... ..++.+...|||+|. .+ ...+++..+.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~~~ 100 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND---KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQVS 100 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCSCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc---CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCcccCC
Confidence 457999999999998888877765 78899999998865543 445556789999993 22 3456788888
Q ss_pred EEEEeC
Q 008235 333 LLVVDR 338 (573)
Q Consensus 333 ~lViDE 338 (573)
++|.-.
T Consensus 101 ~Vi~~~ 106 (165)
T 1fuk_A 101 LVINYD 106 (165)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 887643
No 116
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.27 E-value=0.079 Score=59.39 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hc
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA 281 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~ 281 (573)
++|-|.+|+.. .+..++|.|+.| ||||.+..-- +.++..... .....+|+|+.|+..|.++.+.+..+ ..
T Consensus 12 Ln~~Q~~av~~--~~g~~lV~AgAG-SGKT~vL~~r-i~~ll~~~~-----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~ 82 (724)
T 1pjr_A 12 LNKEQQEAVRT--TEGPLLIMAGAG-SGKTRVLTHR-IAYLMAEKH-----VAPWNILAITFTNKAAREMRERVQSLLGG 82 (724)
T ss_dssp SCHHHHHHHHC--CSSCEEEEECTT-SCHHHHHHHH-HHHHHHTTC-----CCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred CCHHHHHHHhC--CCCCEEEEEcCC-CCHHHHHHHH-HHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHhcc
Confidence 39999999875 357899999999 9999874433 333333210 12347999999999999999888775 22
Q ss_pred --CCcEEEEeC
Q 008235 282 --FGIHTVSLH 290 (573)
Q Consensus 282 --~~i~~~~~~ 290 (573)
.++.+..++
T Consensus 83 ~~~~~~v~Tfh 93 (724)
T 1pjr_A 83 AAEDVWISTFH 93 (724)
T ss_dssp GGTTSEEEEHH
T ss_pred cccCcEEeeHH
Confidence 256665543
No 117
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.00 E-value=0.061 Score=59.77 Aligned_cols=79 Identities=9% Similarity=0.006 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh-hc
Q 008235 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA 281 (573)
Q Consensus 203 ~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~ 281 (573)
+||-|.+++.. .+..++|.|+.| ||||.+..--+...+.... .....+|+|+.|+..|.++.+.+..+ ..
T Consensus 3 L~~~Q~~av~~--~~~~~lV~AgaG-SGKT~~l~~ri~~ll~~~~------~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 3 LNPGQQQAVEF--VTGPCLVLAGAG-SGKTRVITNKIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCHHHHHHHHC--CSSEEEECCCTT-SCHHHHHHHHHHHHHHHHC------CCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCC-CChHHHHHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 58999999875 367899999999 9999874433333332211 02357999999999999999888775 22
Q ss_pred ---CCcEEEEeC
Q 008235 282 ---FGIHTVSLH 290 (573)
Q Consensus 282 ---~~i~~~~~~ 290 (573)
.++.+..++
T Consensus 74 ~~~~~~~v~Tfh 85 (673)
T 1uaa_A 74 KEARGLMISTFH 85 (673)
T ss_dssp TTTTTSEEEEHH
T ss_pred ccccCCEEEeHH
Confidence 246666544
No 118
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.92 E-value=0.069 Score=63.56 Aligned_cols=71 Identities=11% Similarity=0.008 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 201 LFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
+.+|+-|.++|..- +.+++|.|+-| ||||.+.+--++..+..... ....-++|+|++|+..|..+.+.+..
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AG-SGKT~vl~~ri~~ll~~~~~----~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAG-SGKTAVLVERMIRKITAEEN----PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTT-CCHHHHHHHHHHHHHSCSSS----CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCC-CcHHHHHHHHHHHHHhcCCC----CCCccceEEEeccHHHHHHHHHHHHH
Confidence 45699999998753 88999999999 99998754444444443210 01244799999999999999887766
No 119
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=93.78 E-value=0.23 Score=44.64 Aligned_cols=74 Identities=12% Similarity=0.216 Sum_probs=56.3
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.|+|+.-+..+...+... ++.+..++|+.+..... ..+.++..+|+|+|.- -...+++..+.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~~~ 101 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ---NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERVN 101 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc---CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcchhhCC
Confidence 457999999999999888887765 88899999998865543 4455567899999931 23347788888
Q ss_pred EEEEeC
Q 008235 333 LLVVDR 338 (573)
Q Consensus 333 ~lViDE 338 (573)
+||.-.
T Consensus 102 ~Vi~~d 107 (172)
T 1t5i_A 102 IAFNYD 107 (172)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 888633
No 120
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.70 E-value=0.52 Score=49.10 Aligned_cols=52 Identities=6% Similarity=0.139 Sum_probs=38.2
Q ss_pred CCccEEEEeCccccc--C----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHh
Q 008235 329 SGVSLLVVDRLDSLS--K----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL 380 (573)
Q Consensus 329 ~~l~~lViDEad~ll--~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l 380 (573)
.+.+++|||++-++. . ..++..+...+.++.-+++++|+........+..|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 467899999998765 3 556666777776666678888887777766666664
No 121
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.68 E-value=0.062 Score=50.60 Aligned_cols=18 Identities=6% Similarity=-0.202 Sum_probs=15.5
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.++.+++..|+| +|||..
T Consensus 51 ~~~~~ll~G~~G-~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVK-SGRTHL 68 (242)
T ss_dssp SCSEEEEECSTT-SSHHHH
T ss_pred CCCeEEEECCCC-CCHHHH
Confidence 357899999999 999964
No 122
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.47 E-value=0.14 Score=47.85 Aligned_cols=39 Identities=0% Similarity=-0.198 Sum_probs=23.9
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccH
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQ 266 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 266 (573)
|+=.++..+-| ||||.+. +-++.+... .+.+++|+.|..
T Consensus 28 G~l~vitG~Mg-sGKTT~l-L~~a~r~~~---------~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMF-SGKSEEL-IRRVRRTQF---------AKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTT-SCHHHHH-HHHHHHHHH---------TTCCEEEEECC-
T ss_pred CEEEEEECCCC-CcHHHHH-HHHHHHHHH---------CCCEEEEEEecc
Confidence 33334556669 9999764 334433332 366899999864
No 123
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.38 E-value=0.48 Score=47.11 Aligned_cols=17 Identities=12% Similarity=-0.146 Sum_probs=14.8
Q ss_pred CCcEEEEeCCCchhHHHH
Q 008235 217 AKDILETSGSSSTIVQIA 234 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (573)
+..+++..|+| +|||..
T Consensus 37 ~~~lll~G~~G-tGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVG-TGKTHL 53 (324)
T ss_dssp CSSEEEECSSS-SSHHHH
T ss_pred CCeEEEECCCC-CcHHHH
Confidence 46899999999 999965
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.99 E-value=0.67 Score=42.45 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=24.8
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEe
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
..-.+|||||+|.+.. ...+..++...+.+..+++.+
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 4567999999998865 555666666655555454443
No 125
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.94 E-value=0.18 Score=50.70 Aligned_cols=39 Identities=8% Similarity=-0.036 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHh----cCC---cEEEEeCCCchhHHHHHHHHHHHHHH
Q 008235 204 NSWGIEFWKCYS----SAK---DILETSGSSSTIVQIAWIVATAADSI 244 (573)
Q Consensus 204 t~iQ~~aip~il----~g~---dvl~~A~TG~SGKTlaf~lp~l~~l~ 244 (573)
.|||..++..+. +|+ -+++..|.| +|||... .-+...+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G-~GKt~~a-~~la~~l~ 49 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPG-MGDDALI-YALSRYLL 49 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTT-SCHHHHH-HHHHHHHT
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCC-chHHHHH-HHHHHHHh
Confidence 688888876654 343 388999999 9999653 33444443
No 126
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=92.89 E-value=0.27 Score=53.91 Aligned_cols=114 Identities=10% Similarity=0.018 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 202 FVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 202 ~~t~iQ~~aip~il~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.+|.-|.+++..++.- .-.++.|+-| .|||.+..+.+- .+. ..++|.+||.+=+..+.+.+..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RG-RGKSa~lG~~~a-~~~------------~~~~vtAP~~~a~~~l~~~~~~- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARG-RGKSALAGQLIS-RIA------------GRAIVTAPAKASTDVLAQFAGE- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTT-SSHHHHHHHHHH-HSS------------SCEEEECSSCCSCHHHHHHHGG-
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCC-CCHHHHHHHHHH-HHH------------hCcEEECCCHHHHHHHHHHhhC-
Confidence 3588999999988873 3467889999 999966544332 221 1359999997765544333211
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhcCCCC
Q 008235 280 KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359 (573)
Q Consensus 280 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~ 359 (573)
.|-+..|..+.. .+.+.++||||||=.+ ..+.+..++...
T Consensus 240 ----------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI-p~pll~~ll~~~---- 279 (671)
T 2zpa_A 240 ----------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI-PAPLLHQLVSRF---- 279 (671)
T ss_dssp ----------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS-CHHHHHHHHTTS----
T ss_pred ----------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC-CHHHHHHHHhhC----
Confidence 022335655321 2345899999999744 477777777643
Q ss_pred cEEEEeccCCc
Q 008235 360 HTVVFNDCLTY 370 (573)
Q Consensus 360 q~l~~SAT~~~ 370 (573)
..++||.|...
T Consensus 280 ~~v~~~tTv~G 290 (671)
T 2zpa_A 280 PRTLLTTTVQG 290 (671)
T ss_dssp SEEEEEEEBSS
T ss_pred CeEEEEecCCc
Confidence 35777888653
No 127
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.75 E-value=0.22 Score=46.53 Aligned_cols=40 Identities=8% Similarity=-0.120 Sum_probs=25.6
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccH
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQ 266 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 266 (573)
.|.=.++..+-| +|||.. ++-.+.+... .+.+++|+.|..
T Consensus 27 ~G~I~vitG~M~-sGKTT~-Llr~~~r~~~---------~g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMF-SGKSEE-LIRRLRRGIY---------AKQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTT-SCHHHH-HHHHHHHHHH---------TTCCEEEEEEC-
T ss_pred CceEEEEECCCC-CCHHHH-HHHHHHHHHH---------cCCceEEEEecc
Confidence 345456778889 999965 3444444332 356789999854
No 128
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.69 E-value=1.1 Score=48.27 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=61.4
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
.+..+||.|+|+.-|..++..+......++.+..++|+.+..... ..+.++..+|||||. .+ ...+++.++
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~GiDip~v 411 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPNV 411 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTTC
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh-hcCCCcccC
Confidence 366899999999999999998887655588899999999865543 444556799999994 22 345788899
Q ss_pred cEEEEeCc
Q 008235 332 SLLVVDRL 339 (573)
Q Consensus 332 ~~lViDEa 339 (573)
++||.-..
T Consensus 412 ~~VI~~~~ 419 (563)
T 3i5x_A 412 HEVLQIGV 419 (563)
T ss_dssp CEEEEESC
T ss_pred CEEEEECC
Confidence 99886543
No 129
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.32 E-value=0.064 Score=47.24 Aligned_cols=54 Identities=11% Similarity=0.050 Sum_probs=30.6
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCC-CCcEEEEeccC-CccH---HHHHHHHhcC
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISG-KPHTVVFNDCL-TYTS---VPAVQNLLLG 382 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~-~~q~l~~SAT~-~~~~---~~~~~~~l~~ 382 (573)
.+.++|||||++.+.. ...+..+++.+.. ...+++++... |... .++..++...
T Consensus 82 ~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~~g 142 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYC 142 (149)
T ss_dssp GGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGGGS
T ss_pred hCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHhcC
Confidence 3568999999998655 4455555555432 24434555553 3322 4555555443
No 130
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.30 E-value=0.75 Score=47.96 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=25.9
Q ss_pred ccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHh
Q 008235 331 VSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL 380 (573)
Q Consensus 331 l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l 380 (573)
.+++|||.+=++.. ..++..+.....++.-+++++||........+..|.
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFK 236 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHH
Confidence 45666666654432 334444444444554555666666555555554443
No 131
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=92.29 E-value=0.53 Score=46.54 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=55.5
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+..+||.|+|++-+..+...+... ++.+..++|+.+...+. ..++.+..+|+|||- +-...+++.++.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~---g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------va~~Gidi~~v~ 98 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL---GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------VAARGLDIPQVD 98 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT---TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS------TTTCSTTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC---CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec------hhhcCcccccee
Confidence 457999999999988888777654 88999999998866554 344556789999993 223457888999
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||.
T Consensus 99 ~VI~ 102 (300)
T 3i32_A 99 LVVH 102 (300)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 132
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.25 E-value=0.78 Score=47.94 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=23.5
Q ss_pred CccEEEEeCcccccC----cchHHHHHHhc-CCCCcEEEEec
Q 008235 330 GVSLLVVDRLDSLSK----GDTLSLIRQSI-SGKPHTVVFND 366 (573)
Q Consensus 330 ~l~~lViDEad~ll~----~~~l~~Il~~l-~~~~q~l~~SA 366 (573)
+..+|+|||+|.+.+ ...+..++..+ ..+.++++.|.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 467999999999986 33444555443 34455555443
No 133
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.88 E-value=1.6 Score=47.24 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=61.6
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
.+..+||.|+|+.-|..+++.+......++.+..++|+.+..... ..+..+..+|||||. .+ ...+++.++
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip~v 360 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPNV 360 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTTC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCcccC
Confidence 366899999999999999998887644588899999998865543 445556789999994 22 345788899
Q ss_pred cEEEEeCc
Q 008235 332 SLLVVDRL 339 (573)
Q Consensus 332 ~~lViDEa 339 (573)
++||.-..
T Consensus 361 ~~VI~~~~ 368 (579)
T 3sqw_A 361 HEVLQIGV 368 (579)
T ss_dssp CEEEEESC
T ss_pred CEEEEcCC
Confidence 99987654
No 134
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.79 E-value=1.4 Score=44.33 Aligned_cols=17 Identities=12% Similarity=-0.103 Sum_probs=14.9
Q ss_pred CCcEEEEeCCCchhHHHH
Q 008235 217 AKDILETSGSSSTIVQIA 234 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (573)
+..+++..|+| +|||..
T Consensus 44 ~~~vll~G~~G-~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTG-TGKTAV 60 (387)
T ss_dssp CCCEEECBCTT-SSHHHH
T ss_pred CCcEEEECCCC-CCHHHH
Confidence 47899999999 999965
No 135
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=91.54 E-value=0.38 Score=43.80 Aligned_cols=72 Identities=19% Similarity=0.332 Sum_probs=47.2
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.|+|+.-+..+...+... |+.+..++|+.+.... ...++.+...|||+|. .+. ..+++..+.
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~---g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~~~ 116 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE---GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNVK 116 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT---TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSBS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc---CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh-cCCCcccCC
Confidence 567999999999999888887765 8889999998875433 3455566789999993 222 346778888
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||.
T Consensus 117 ~VI~ 120 (185)
T 2jgn_A 117 HVIN 120 (185)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
No 136
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.52 E-value=0.86 Score=41.89 Aligned_cols=130 Identities=11% Similarity=0.058 Sum_probs=68.7
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc------ccHHHHHHHHHHHhhhhcCCcEEEEeCC
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV------SSQEKAAKVRSVCKPLKAFGIHTVSLHP 291 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~------PtreLa~Qi~~~~~~l~~~~i~~~~~~g 291 (573)
-.+++..+.| .|||.+.+--++..+. .|.+++|+- .+-|. ..+..| ++.....--
T Consensus 29 g~i~v~tG~G-kGKTTaA~GlalRA~g----------~G~rV~~vQF~Kg~~~~gE~-----~~l~~L---~v~~~~~g~ 89 (196)
T 1g5t_A 29 GIIIVFTGNG-KGKTTAAFGTAARAVG----------HGKNVGVVQFIKGTWPNGER-----NLLEPH---GVEFQVMAT 89 (196)
T ss_dssp CCEEEEESSS-SCHHHHHHHHHHHHHH----------TTCCEEEEESSCCSSCCHHH-----HHHGGG---TCEEEECCT
T ss_pred ceEEEECCCC-CCHHHHHHHHHHHHHH----------CCCeEEEEEeeCCCCCccHH-----HHHHhC---CcEEEEccc
Confidence 4788899999 9999886554554443 367888883 22222 223333 333332222
Q ss_pred CCCHHHHH--HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccc-----cCcchHHHHHHhcCCCCcEEEE
Q 008235 292 GAAIDHQI--TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL-----SKGDTLSLIRQSISGKPHTVVF 364 (573)
Q Consensus 292 g~~~~~~~--~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~l-----l~~~~l~~Il~~l~~~~q~l~~ 364 (573)
|..+..+. ..... -...|..+... +.-..+++||+||+-.. ++.+++..++...+...-+|+.
T Consensus 90 gf~~~~~~~~~~~~~---------a~~~l~~a~~~-l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlT 159 (196)
T 1g5t_A 90 GFTWETQNREADTAA---------CMAVWQHGKRM-LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIIT 159 (196)
T ss_dssp TCCCCGGGHHHHHHH---------HHHHHHHHHHH-TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEE
T ss_pred ccccCCCCcHHHHHH---------HHHHHHHHHHH-HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEE
Confidence 22111100 00000 01122222221 22356899999999643 3366677777776666666666
Q ss_pred eccCCccHHHHH
Q 008235 365 NDCLTYTSVPAV 376 (573)
Q Consensus 365 SAT~~~~~~~~~ 376 (573)
+--.|+++.+++
T Consensus 160 Gr~ap~~l~e~A 171 (196)
T 1g5t_A 160 GRGCHRDILDLA 171 (196)
T ss_dssp CSSCCHHHHHHC
T ss_pred CCCCcHHHHHhC
Confidence 666666555544
No 137
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.41 E-value=0.56 Score=47.15 Aligned_cols=36 Identities=3% Similarity=-0.053 Sum_probs=23.4
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc
Q 008235 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS 264 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P 264 (573)
.=+++.+++| +||| +|++-+...+... +..++|++.
T Consensus 47 ~LiiIaG~pG-~GKT-t~al~ia~~~a~~---------g~~Vl~fSl 82 (338)
T 4a1f_A 47 SLVIIGARPS-MGKT-SLMMNMVLSALND---------DRGVAVFSL 82 (338)
T ss_dssp CEEEEEECTT-SCHH-HHHHHHHHHHHHT---------TCEEEEEES
T ss_pred cEEEEEeCCC-CCHH-HHHHHHHHHHHHc---------CCeEEEEeC
Confidence 4466778999 9999 4555555554432 456777764
No 138
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.27 E-value=1.5 Score=39.91 Aligned_cols=16 Identities=6% Similarity=-0.137 Sum_probs=14.4
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+.+++..|+| +|||..
T Consensus 55 ~~~~l~G~~G-tGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFG-VGKTYL 70 (202)
T ss_dssp CEEEEECSTT-SSHHHH
T ss_pred CeEEEECCCC-CCHHHH
Confidence 7899999999 999965
No 139
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.21 E-value=0.5 Score=47.95 Aligned_cols=16 Identities=13% Similarity=-0.236 Sum_probs=14.2
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+.+++..|+| +|||..
T Consensus 46 ~~vll~G~~G-~GKT~l 61 (384)
T 2qby_B 46 FSNLFLGLTG-TGKTFV 61 (384)
T ss_dssp CEEEEEECTT-SSHHHH
T ss_pred CcEEEECCCC-CCHHHH
Confidence 5799999999 999965
No 140
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=90.22 E-value=1.1 Score=45.73 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=56.8
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
.+.++||.|+|++-+..+++.+... ++.+..++|+.+..... ..++++..+|||+|. .+. ..+++.++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~v 345 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE---GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNV 345 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCCE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC---CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCcccC
Confidence 3668999999999999988887765 78899999999865543 444556789999994 343 35788888
Q ss_pred cEEEE
Q 008235 332 SLLVV 336 (573)
Q Consensus 332 ~~lVi 336 (573)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88775
No 141
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=89.86 E-value=3.9 Score=41.06 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=61.2
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.+++++-|..+++.++.. ++.+..++|+.+..+.. ..++.+..+|||+|. +-...+++.+++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~ 313 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE---GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTVS 313 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccCC
Confidence 568999999999999888888765 78889999998865543 445566789999994 223457889999
Q ss_pred EEEEeCccccc
Q 008235 333 LLVVDRLDSLS 343 (573)
Q Consensus 333 ~lViDEad~ll 343 (573)
+||.-....+.
T Consensus 314 ~Vi~~~~p~~~ 324 (395)
T 3pey_A 314 MVVNYDLPTLA 324 (395)
T ss_dssp EEEESSCCBCT
T ss_pred EEEEcCCCCCC
Confidence 99987665443
No 142
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=89.78 E-value=1.3 Score=44.97 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=56.8
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.|+|+.-|..+++.+... ++.+..++|+.+..+.. ..++.+..+|||+|. . -...+++.+++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~~~ 336 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE---GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----V-CARGIDVEQVS 336 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTSSCCCTTEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC---CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----c-cccCCCccCCC
Confidence 558999999999999998888776 78889999998866543 445566789999994 2 23457888999
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||.
T Consensus 337 ~Vi~ 340 (412)
T 3fht_A 337 VVIN 340 (412)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
No 143
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.78 E-value=1.4 Score=42.31 Aligned_cols=17 Identities=6% Similarity=-0.160 Sum_probs=14.7
Q ss_pred CcEEEEeCCCchhHHHHH
Q 008235 218 KDILETSGSSSTIVQIAW 235 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (573)
..+++..|+| +|||...
T Consensus 65 ~~vLl~G~~G-tGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPH-SGKTALA 81 (272)
T ss_dssp EEEEEECSTT-SSHHHHH
T ss_pred eEEEEECCCC-CcHHHHH
Confidence 6799999999 9999753
No 144
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.63 E-value=1.2 Score=44.02 Aligned_cols=18 Identities=6% Similarity=-0.154 Sum_probs=15.5
Q ss_pred CCcEEEEeCCCchhHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (573)
++.+++..|+| +|||...
T Consensus 152 ~~~lll~G~~G-tGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMG-IGKSYLL 169 (308)
T ss_dssp CCEEEEECSTT-SSHHHHH
T ss_pred CceEEEECCCC-CCHHHHH
Confidence 57899999999 9999653
No 145
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.53 E-value=2.1 Score=37.87 Aligned_cols=17 Identities=0% Similarity=-0.150 Sum_probs=14.6
Q ss_pred CCcEEEEeCCCchhHHHH
Q 008235 217 AKDILETSGSSSTIVQIA 234 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (573)
...+++..|+| +|||..
T Consensus 43 ~~~vll~G~~G-~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPG-VGKTAI 59 (187)
T ss_dssp SCEEEEESCGG-GCHHHH
T ss_pred CCceEEECCCC-CCHHHH
Confidence 46899999999 999964
No 146
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=89.29 E-value=1.9 Score=42.40 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=24.5
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEE
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVF 364 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~ 364 (573)
..-.+|||||+|.+.. ...+..+++..+.+..+++.
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~ 146 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILS 146 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 4567999999998865 55566666665555554443
No 147
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.14 E-value=0.82 Score=44.85 Aligned_cols=18 Identities=11% Similarity=-0.151 Sum_probs=15.1
Q ss_pred CCcEEEEeCCCchhHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (573)
+..+++..|+| +|||...
T Consensus 67 ~~~vll~G~~G-tGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPG-TGKTTVA 84 (309)
T ss_dssp CCEEEEEECTT-SSHHHHH
T ss_pred CceEEEECCCC-CCHHHHH
Confidence 35799999999 9999753
No 148
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=88.68 E-value=0.99 Score=49.82 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=62.1
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHH---HhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQIT---GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~---~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.|+|+.-|..+.+.+... |+.+..++|+.+...... .++.+.++|+|||- .+ ...+++..++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~---gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~v~ 515 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI---GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPEVS 515 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTTEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc---CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCCCC
Confidence 568999999999999888887765 888899999887655443 35556799999993 22 3457888999
Q ss_pred EEEEeCccccc
Q 008235 333 LLVVDRLDSLS 343 (573)
Q Consensus 333 ~lViDEad~ll 343 (573)
++|+-++|...
T Consensus 516 lVi~~d~d~~G 526 (661)
T 2d7d_A 516 LVAILDADKEG 526 (661)
T ss_dssp EEEETTTTCCT
T ss_pred EEEEeCccccc
Confidence 99999998643
No 149
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.60 E-value=1.6 Score=46.62 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=56.3
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+..+||.|+|+.-+..+++.+... |+.+..++||.+.... ...+..+..+|||||. .-...+++.+++
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~---g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~------a~~~GiD~p~v~ 306 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK---GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV------AFGMGINKPNVR 306 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT------TSCTTTCCTTCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC---CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhCCCCccCcc
Confidence 557999999999999988888765 8889999999986543 3445556799999994 123347888999
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||.
T Consensus 307 ~VI~ 310 (523)
T 1oyw_A 307 FVVH 310 (523)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9886
No 150
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.45 E-value=1.2 Score=44.73 Aligned_cols=17 Identities=12% Similarity=-0.033 Sum_probs=14.9
Q ss_pred CCcEEEEeCCCchhHHHH
Q 008235 217 AKDILETSGSSSTIVQIA 234 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (573)
+..+++..|+| +|||..
T Consensus 45 ~~~vli~G~~G-~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTG-TGKTAV 61 (386)
T ss_dssp CCCEEEEECTT-SSHHHH
T ss_pred CCeEEEECCCC-CCHHHH
Confidence 57899999999 999965
No 151
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=88.34 E-value=2.2 Score=43.55 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=55.8
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
..++||.|+|++-+..+++.+... ++.+..++|+.+..+.. ..++++...|||+|. +-...+++.+++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v~ 346 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA---NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQVS 346 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTEE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC---CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccCC
Confidence 448999999999999888887765 78889999998865443 445556789999994 223457888898
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||.
T Consensus 347 ~Vi~ 350 (410)
T 2j0s_A 347 LIIN 350 (410)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 152
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=88.20 E-value=0.64 Score=42.72 Aligned_cols=39 Identities=3% Similarity=-0.195 Sum_probs=26.2
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEccc
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 265 (573)
.|+=.++.+|.| ||||.- ++-.+..... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~Mg-sGKTt~-Ll~~i~n~~~---------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMF-SGKSTE-LMRRVRRFQI---------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTT-SCHHHH-HHHHHHHHHH---------TTCCEEEEEET
T ss_pred ceEEEEEECCCC-CcHHHH-HHHHHHHHHH---------cCCeEEEEccc
Confidence 356667889999 999954 4444443332 25678999885
No 153
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.15 E-value=1.2 Score=48.46 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=57.0
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
.+..+||.|+|+.-+.+++..+... |+.+..++||.+..... ..+..+..+|||||- +....+++.++
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~---g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~------a~~~GID~p~V 336 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL---GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV------AFGMGIDKPDV 336 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT------TSCTTCCCSCE
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC---CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhcCCCcccc
Confidence 3568999999999999999888765 88999999999866543 344556789999993 12335788899
Q ss_pred cEEEE
Q 008235 332 SLLVV 336 (573)
Q Consensus 332 ~~lVi 336 (573)
++||.
T Consensus 337 ~~VI~ 341 (591)
T 2v1x_A 337 RFVIH 341 (591)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 99884
No 154
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.08 E-value=2.2 Score=44.30 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=55.1
Q ss_pred EEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEE
Q 008235 258 FLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLL 334 (573)
Q Consensus 258 ~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~l 334 (573)
.+||.|+|+.-|..+++.+... ++.+..++|+.+..+.. ..++++...|||||. +-...+++.++++|
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~V 372 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK---EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKHV 372 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT---TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCEE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC---CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCEE
Confidence 3999999999999888887765 88899999998865443 445566789999994 23345788899988
Q ss_pred EE
Q 008235 335 VV 336 (573)
Q Consensus 335 Vi 336 (573)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 155
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=87.94 E-value=1.2 Score=44.31 Aligned_cols=74 Identities=14% Similarity=0.245 Sum_probs=56.0
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
.+.++||.|++++-+..+++.+... ++.+..++|+.+..... ..+.++..+|+|+|. .+.. .+++.++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~~~ 307 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI---GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVNDL 307 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT---TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCSCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc---CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCcccC
Confidence 3567999999999999998888765 78899999998865443 444556789999993 2222 3677788
Q ss_pred cEEEEe
Q 008235 332 SLLVVD 337 (573)
Q Consensus 332 ~~lViD 337 (573)
++||.-
T Consensus 308 ~~Vi~~ 313 (367)
T 1hv8_A 308 NCVINY 313 (367)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 888753
No 156
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=87.64 E-value=3.8 Score=45.13 Aligned_cols=78 Identities=24% Similarity=0.230 Sum_probs=61.3
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHH---HhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQIT---GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~---~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.|+|+.-|..+.+.+... |+.+..++|+.+...... .+..+.++|+|||- .+ ...+++..++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~---gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~v~ 509 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH---GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPEVS 509 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTTEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc---CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCCCC
Confidence 568999999999999888887765 788889999887654433 35566799999993 22 3457888999
Q ss_pred EEEEeCcccc
Q 008235 333 LLVVDRLDSL 342 (573)
Q Consensus 333 ~lViDEad~l 342 (573)
++|+=++|..
T Consensus 510 lVI~~d~d~~ 519 (664)
T 1c4o_A 510 LVAILDADKE 519 (664)
T ss_dssp EEEETTTTSC
T ss_pred EEEEeCCccc
Confidence 9999998854
No 157
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=87.55 E-value=2 Score=43.51 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=55.9
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.|++++-+..+++.+... ++.+..++|+.+..... ..+.++..+|||+|. .+ ...+++..++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~~~ 328 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL---GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQAVN 328 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH---TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTTEE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc---CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc-ccCCCccCCC
Confidence 558999999999999998888776 78899999998865543 445566789999993 22 3447888888
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||.
T Consensus 329 ~Vi~ 332 (400)
T 1s2m_A 329 VVIN 332 (400)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 158
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.50 E-value=3.1 Score=38.29 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=20.6
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEE
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVF 364 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~ 364 (573)
..-.+|||||+|.+.. ...+..++...+....+++.
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~ 162 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 162 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEE
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEE
Confidence 3457999999998753 34444444443333333433
No 159
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.49 E-value=1.8 Score=45.26 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=23.3
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~ 263 (573)
|.=+++.+++| +|||. |++-+...+... .|..++|+.
T Consensus 203 G~liiI~G~pG-~GKTt-l~l~ia~~~~~~--------~g~~Vl~~s 239 (454)
T 2r6a_A 203 SDLIIVAARPS-VGKTA-FALNIAQNVATK--------TNENVAIFS 239 (454)
T ss_dssp TCEEEEECCTT-SCHHH-HHHHHHHHHHHH--------SSCCEEEEE
T ss_pred CCEEEEECCCC-CCHHH-HHHHHHHHHHHh--------CCCcEEEEE
Confidence 35567778999 99994 555555544432 133567766
No 160
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=87.08 E-value=0.12 Score=46.44 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=52.6
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.|+|+.-+..+...+... ++.+..++|+.+..... ..+..+..+|||+|. .+. ..+++..++
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gid~~~~~ 100 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA---GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA-RGIDIPDVS 100 (170)
Confidence 457999999999998888877665 78888999987754433 344555688999993 222 335677777
Q ss_pred EEEEe
Q 008235 333 LLVVD 337 (573)
Q Consensus 333 ~lViD 337 (573)
++|.-
T Consensus 101 ~Vi~~ 105 (170)
T 2yjt_D 101 HVFNF 105 (170)
Confidence 77753
No 161
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=86.80 E-value=1.7 Score=43.89 Aligned_cols=75 Identities=13% Similarity=0.255 Sum_probs=57.5
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.+++++-+..+++.+... ++.+..++|+.+..... ..+.++...|||+|. . -...+++..++
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~-~~~Gidi~~~~ 320 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ---NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGMDIERVN 320 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----C-CSSCBCCTTEE
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----h-hhcCCCcccCC
Confidence 568999999999999998887765 78899999998865443 445556789999993 1 22457888899
Q ss_pred EEEEeCc
Q 008235 333 LLVVDRL 339 (573)
Q Consensus 333 ~lViDEa 339 (573)
+||.-..
T Consensus 321 ~Vi~~~~ 327 (391)
T 1xti_A 321 IAFNYDM 327 (391)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 9887544
No 162
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=86.78 E-value=0.8 Score=47.85 Aligned_cols=70 Identities=13% Similarity=0.235 Sum_probs=48.5
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEE
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lV 335 (573)
+.++||+|||++-|..+++.++.. ++++..++|. ........+.++..+|||||. .+ ...+++. +++||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~---~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~-----v~-e~GiDip-v~~VI 245 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA---GKSVVVLNRK-TFEREYPTIKQKKPDFILATD-----IA-EMGANLC-VERVL 245 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT---TCCEEECCSS-SCC--------CCCSEEEESS-----ST-TCCTTCC-CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc---CCCEEEecch-hHHHHHhhhcCCCceEEEECC-----hh-heeeccC-ceEEE
Confidence 458999999999999998887765 7889999983 444555667777799999994 22 3447788 88876
Q ss_pred E
Q 008235 336 V 336 (573)
Q Consensus 336 i 336 (573)
.
T Consensus 246 ~ 246 (440)
T 1yks_A 246 D 246 (440)
T ss_dssp E
T ss_pred e
Confidence 3
No 163
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=86.57 E-value=1.2 Score=44.93 Aligned_cols=15 Identities=7% Similarity=-0.137 Sum_probs=13.6
Q ss_pred cEEEEeCCCchhHHHH
Q 008235 219 DILETSGSSSTIVQIA 234 (573)
Q Consensus 219 dvl~~A~TG~SGKTla 234 (573)
.+++.+|+| +|||..
T Consensus 46 ~~li~G~~G-~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPG-TGKTVT 60 (389)
T ss_dssp EEEEECCTT-SSHHHH
T ss_pred eEEEECCCC-CCHHHH
Confidence 799999999 999965
No 164
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.25 E-value=1.8 Score=43.13 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=24.8
Q ss_pred CccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEe
Q 008235 330 GVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 330 ~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
...+|+|||+|.+.. ...+..+++..+....+++.+
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEe
Confidence 457999999998875 555666666655555555543
No 165
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=85.81 E-value=1.8 Score=42.95 Aligned_cols=16 Identities=13% Similarity=-0.049 Sum_probs=14.4
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
..+++..|+| +|||..
T Consensus 56 ~~vll~G~~G-tGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAG-LGKTTL 71 (338)
T ss_dssp CCEEEECSTT-SSHHHH
T ss_pred CeEEEECcCC-CCHHHH
Confidence 5799999999 999975
No 166
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=85.74 E-value=1.7 Score=40.94 Aligned_cols=40 Identities=3% Similarity=-0.207 Sum_probs=24.6
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccH
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQ 266 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 266 (573)
.|+=.+...+-| ||||.+. |-.+.+... .+.+++|+-|..
T Consensus 18 ~g~l~v~~G~Mg-sGKTT~l-L~~~~r~~~---------~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMF-SGKSTEL-MRRVRRFQI---------AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTT-SCHHHHH-HHHHHHHHT---------TTCCEEEEEETT
T ss_pred ceEEEEEECCCC-CcHHHHH-HHHHHHHHH---------CCCeEEEEeecC
Confidence 355445556669 9999763 333333322 367889988853
No 167
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.64 E-value=2.3 Score=41.64 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=25.3
Q ss_pred CccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEe
Q 008235 330 GVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 330 ~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
.-.+|||||+|.|.. ...+..++...+.+..+++.+
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEe
Confidence 467999999999875 556667776655555555544
No 168
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=85.62 E-value=1.5 Score=43.47 Aligned_cols=36 Identities=11% Similarity=0.017 Sum_probs=23.3
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~ 263 (573)
|.=+++.+++| +||| +|++-+...+... +..++|++
T Consensus 68 G~l~li~G~pG-~GKT-tl~l~ia~~~a~~---------g~~vl~~s 103 (315)
T 3bh0_A 68 RNFVLIAARPS-MGKT-AFALKQAKNMSDN---------DDVVNLHS 103 (315)
T ss_dssp TCEEEEECCTT-SSHH-HHHHHHHHHHHTT---------TCEEEEEE
T ss_pred CcEEEEEeCCC-CCHH-HHHHHHHHHHHHc---------CCeEEEEE
Confidence 35577778999 9999 4555555444322 34677776
No 169
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=84.26 E-value=2.1 Score=42.07 Aligned_cols=16 Identities=6% Similarity=-0.128 Sum_probs=14.4
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
..+++..|+| +|||..
T Consensus 39 ~~vll~G~~G-tGKT~l 54 (324)
T 1hqc_A 39 EHLLLFGPPG-LGKTTL 54 (324)
T ss_dssp CCCEEECCTT-CCCHHH
T ss_pred CcEEEECCCC-CCHHHH
Confidence 6899999999 999965
No 170
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=84.12 E-value=4.2 Score=42.31 Aligned_cols=38 Identities=8% Similarity=-0.021 Sum_probs=24.0
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS 264 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P 264 (573)
|.=+++.+++| +||| +|++-+...+... .+..++|++.
T Consensus 200 G~l~ii~G~pg-~GKT-~lal~ia~~~a~~--------~g~~vl~~sl 237 (444)
T 2q6t_A 200 GSLNIIAARPA-MGKT-AFALTIAQNAALK--------EGVGVGIYSL 237 (444)
T ss_dssp TCEEEEEECTT-SCHH-HHHHHHHHHHHHT--------TCCCEEEEES
T ss_pred CcEEEEEeCCC-CCHH-HHHHHHHHHHHHh--------CCCeEEEEEC
Confidence 34567778999 9999 4556555554432 1345677654
No 171
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=83.95 E-value=1.5 Score=43.40 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=26.4
Q ss_pred CCccEEEEeCccccc-C--cchHHHHHHhcCCCCcEEEEe
Q 008235 329 SGVSLLVVDRLDSLS-K--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 329 ~~l~~lViDEad~ll-~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
....+|+|||+|.+. . ...+..+++..+.+.++++.+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 467899999999997 4 566666666655566666543
No 172
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.55 E-value=1.8 Score=43.14 Aligned_cols=37 Identities=16% Similarity=0.389 Sum_probs=26.6
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEe
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
...+++||||+|.|.. ...+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 4578999999998875 666777777766655555443
No 173
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=83.50 E-value=3.3 Score=42.64 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=54.4
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCC--------CCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHP--------GAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSL 323 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~g--------g~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~ 323 (573)
.+.++||.+++++-+..+.+.+... |+.+..++| +.+..+. ...+..+.+.|||+|. .+ .
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~-~ 430 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD---GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VG-E 430 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT---TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GG-G
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc---CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cc-c
Confidence 3668999999999999988888776 888999999 6654333 3455566789999993 12 2
Q ss_pred CCCCCCCccEEEEeCc
Q 008235 324 KAIDVSGVSLLVVDRL 339 (573)
Q Consensus 324 ~~~~l~~l~~lViDEa 339 (573)
..+++..+++||+-+.
T Consensus 431 ~Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 431 EGLDVPEVDLVVFYEP 446 (494)
T ss_dssp GGGGSTTCCEEEESSC
T ss_pred cCCCchhCCEEEEeCC
Confidence 3477888888885443
No 174
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=83.43 E-value=2.6 Score=46.49 Aligned_cols=70 Identities=11% Similarity=0.209 Sum_probs=53.2
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEE
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lV 335 (573)
+.++||+|||++-+..+++.+... ++++..++|. ........+.++..+|||||- .+ ...+++. +.+||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~---g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~-e~GIDip-v~~VI 478 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA---GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----IS-EMGANFG-ASRVI 478 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT---TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GG-GTTCCCC-CSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC---CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hh-hcceeeC-CcEEE
Confidence 568999999999999888887765 8889999984 444555667777899999993 23 3446777 87766
Q ss_pred E
Q 008235 336 V 336 (573)
Q Consensus 336 i 336 (573)
.
T Consensus 479 ~ 479 (673)
T 2wv9_A 479 D 479 (673)
T ss_dssp E
T ss_pred E
Confidence 3
No 175
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=82.57 E-value=6.2 Score=41.54 Aligned_cols=87 Identities=10% Similarity=0.109 Sum_probs=53.2
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCC----
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHP---- 291 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~g---- 291 (573)
.|..+.+..-|| ||||++. ..+ ... .+..+|||+|+..+|.|+++.++.|.... +..+-.
T Consensus 13 ~~~~~~l~g~~g-s~ka~~~--a~l---~~~--------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~--v~~fp~~e~l 76 (483)
T 3hjh_A 13 AGEQRLLGELTG-AACATLV--AEI---AER--------HAGPVVLIAPDMQNALRLHDEISQFTDQM--VMNLADWETL 76 (483)
T ss_dssp TTCEEEEECCCT-THHHHHH--HHH---HHH--------SSSCEEEEESSHHHHHHHHHHHHHTCSSC--EEECCCCCSC
T ss_pred CCCeEEEeCCCc-hHHHHHH--HHH---HHH--------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc--EEEEeCcccc
Confidence 355677888899 9998753 222 111 12248999999999999999999874322 332211
Q ss_pred ---CCCH--H---HH---HHHhhcCCCcEEEeCHHHHH
Q 008235 292 ---GAAI--D---HQ---ITGLRSCEPEFLVSTPERLL 318 (573)
Q Consensus 292 ---g~~~--~---~~---~~~l~~~~~~IlV~TP~rL~ 318 (573)
.... + .. ...|......|||+|+..|+
T Consensus 77 pyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~ 114 (483)
T 3hjh_A 77 PYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLM 114 (483)
T ss_dssp TTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHH
T ss_pred cccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHh
Confidence 1111 1 11 12333435679999987765
No 176
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=82.51 E-value=1.8 Score=44.89 Aligned_cols=68 Identities=12% Similarity=0.214 Sum_probs=51.0
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEE
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLL 334 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~l 334 (573)
+.++||+|||++-+..+++.+... ++++..++|+ ........+.++..+|||||. .+. ..+++. +.+|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~---~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT~-----v~e-~GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA---GKKVLYLNRK-TFESEYPKCKSEKWDFVITTD-----ISE-MGANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT---TCCEEEESTT-THHHHTTHHHHSCCSEEEECG-----GGG-TSCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc---CCeEEEeCCc-cHHHHHHhhcCCCCeEEEECc-----hHH-cCcccC-CcEE
Confidence 347999999999999988888776 7889999987 344445666777899999994 333 345665 6555
No 177
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=82.37 E-value=4.4 Score=41.24 Aligned_cols=18 Identities=11% Similarity=-0.023 Sum_probs=15.6
Q ss_pred CCcEEEEeCCCchhHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (573)
++.+|+..|+| +|||...
T Consensus 148 ~~~vLL~GppG-tGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPG-NGKTMLA 165 (389)
T ss_dssp CSEEEEESSTT-SCHHHHH
T ss_pred CceEEEECCCC-CCHHHHH
Confidence 47899999999 9999653
No 178
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.88 E-value=23 Score=34.51 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCCCCCCccEEEEeCcccccC-cchHHHHHHhcC---CCCcEEEEeccCC
Q 008235 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSIS---GKPHTVVFNDCLT 369 (573)
Q Consensus 314 P~rL~~~l~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l~---~~~q~l~~SAT~~ 369 (573)
|..+...+.. +.+.++||||-+-.... ...+..+...+. +..-++++.||..
T Consensus 170 ~~~l~~al~~----~~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 170 KEEFQQAKEL----FSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp HHHHHHHHHH----GGGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred HHHHHHHHHH----hcCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 4444444432 35678999997765433 334555554443 2223667767754
No 179
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=81.60 E-value=3.2 Score=40.94 Aligned_cols=41 Identities=7% Similarity=0.051 Sum_probs=26.1
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccCC
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLT 369 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~~ 369 (573)
....+++||||||.|-. ...+..+++.-++..-++ |.++-+
T Consensus 80 ~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fI-l~t~~~ 122 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIV-LNTRRW 122 (305)
T ss_dssp SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEE-EEESCG
T ss_pred cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEE-EEECCh
Confidence 35678999999999875 555666666544444444 444433
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.04 E-value=2.2 Score=45.45 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=24.1
Q ss_pred CCccEEEEeCcccccC--c---chHHHHHHhcCCCCcEEEEeccC
Q 008235 329 SGVSLLVVDRLDSLSK--G---DTLSLIRQSISGKPHTVVFNDCL 368 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~---~~l~~Il~~l~~~~q~l~~SAT~ 368 (573)
..-.+|||||+|.|.. . ..+..++.. ....+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 3457999999999876 3 334444433 345577776664
No 181
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=80.92 E-value=1.8 Score=39.19 Aligned_cols=123 Identities=7% Similarity=0.016 Sum_probs=72.5
Q ss_pred CCCCHHHHHHHHHHhcCC-cEEE-EeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 201 LFVNSWGIEFWKCYSSAK-DILE-TSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 201 ~~~t~iQ~~aip~il~g~-dvl~-~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
...++-|..++..++..+ -+.+ .++-| ++||-..+.-++.... . .|..+.||+|+..-.....+..
T Consensus 33 ~~~~~~~~~a~~~l~~s~~~~~iv~g~gg-s~~~~~~~a~L~~~a~-~--------~Gr~V~vLAp~~~s~~~l~~~~-- 100 (189)
T 2l8b_A 33 VPRTAGYSDAVSVLAQDRPSLAIVSGQGG-AAGQRERVAELVMMAR-E--------QGREVQIIAADRRSQMNMKQDE-- 100 (189)
T ss_dssp CCCHHHHHHHHHHHHHHSCCEECCBCSSC-SHHHHHHHHHHHHHHH-H--------TTCCEEEECSTTHHHHHHSCTT--
T ss_pred cccCccchhHHHHHhccCCceEEEecccc-hHHHHHHHHHHHHHHH-h--------cCeEEEEEcCchHHHHHHHhhc--
Confidence 445678999999987764 3444 45666 9999886444433222 2 4789999999976554433221
Q ss_pred hhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcccccCcchHHHHHHhc-CC
Q 008235 279 LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI-SG 357 (573)
Q Consensus 279 l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l-~~ 357 (573)
++....+. . ..+......|..=+.||||||-.|. ..++..++... ..
T Consensus 101 ----~l~~~t~t----------------------~-----~~ll~~~~~~tp~s~lIVD~AekLS-~kE~~~Lld~A~~~ 148 (189)
T 2l8b_A 101 ----RLSGELIT----------------------G-----RRQLLEGMAFTPGSTVIVDQGEKLS-LKETLTLLDGAARH 148 (189)
T ss_dssp ----TCSSCSSS----------------------T-----TTTTTTSCCCCCCCEEEEEESSSHH-HHHHHHHHHHHHHT
T ss_pred ----CcCcceee----------------------h-----hhhhcCCCCCCCCCEEEEechhhcC-HHHHHHHHHHHHhc
Confidence 11100010 0 0111122223344589999999776 66666666554 46
Q ss_pred CCcEEEEecc
Q 008235 358 KPHTVVFNDC 367 (573)
Q Consensus 358 ~~q~l~~SAT 367 (573)
+.|+|++--+
T Consensus 149 naqvvll~~~ 158 (189)
T 2l8b_A 149 NVQVLITDSG 158 (189)
T ss_dssp TCCEEEEESS
T ss_pred CCEEEEeCCc
Confidence 7888887655
No 182
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=80.63 E-value=4.1 Score=44.88 Aligned_cols=75 Identities=11% Similarity=0.041 Sum_probs=56.9
Q ss_pred EEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHH---HHHHHhhc--CCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 258 FLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID---HQITGLRS--CEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 258 ~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~---~~~~~l~~--~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
..+|+++|+.-+..+.+.+... ++.+..+||+.+.. .+...+.. +..+|||||- .+ ...+++ .++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~---g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~-e~GlDi-~v~ 391 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIR---GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AI-GMGLNL-SIR 391 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GG-GSSCCC-CBS
T ss_pred CCEEEEcCHHHHHHHHHHHHhc---CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HH-HCCcCc-Ccc
Confidence 4477799998877777777664 78899999999876 55566665 5689999994 23 345788 899
Q ss_pred EEEEeCcccc
Q 008235 333 LLVVDRLDSL 342 (573)
Q Consensus 333 ~lViDEad~l 342 (573)
+||.-.+.+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9999888654
No 183
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=80.31 E-value=12 Score=39.18 Aligned_cols=77 Identities=9% Similarity=-0.005 Sum_probs=53.4
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+...+|++.+.+-+..+.+.+... +.++..++|+++.... ...+.++..+|||||+..+ .. .+++.+++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~---~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~----~~-GiDip~v~ 418 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNE---YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF----ST-GISVKNLH 418 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT---CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH----HH-SCCCCSEE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHc---CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh----hc-ccccccCc
Confidence 344555555566666666666554 5588999999886543 3445566789999996544 33 46889999
Q ss_pred EEEEeCcc
Q 008235 333 LLVVDRLD 340 (573)
Q Consensus 333 ~lViDEad 340 (573)
+||+..++
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99998887
No 184
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.13 E-value=11 Score=38.66 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=14.8
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+-+|+..|.| +|||+.
T Consensus 183 rGvLL~GPPG-TGKTll 198 (405)
T 4b4t_J 183 KGVILYGPPG-TGKTLL 198 (405)
T ss_dssp CCEEEESCSS-SSHHHH
T ss_pred CceEEeCCCC-CCHHHH
Confidence 7899999999 999975
No 185
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=79.67 E-value=3.9 Score=42.65 Aligned_cols=69 Identities=12% Similarity=0.187 Sum_probs=51.9
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEE
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lV 335 (573)
+..+||.|||+.-|.++++.+... ++.+..++|... ......+.++..+|||||- .+ ...+++.. .+||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~---g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~-~~GiDip~-~~VI 256 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS---GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----IS-EMGANFRA-GRVI 256 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT---TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GG-GSSCCCCC-SEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc---CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HH-HhCcCCCC-CEEE
Confidence 347999999999999888887765 788888888654 4445666777899999994 23 34467777 6665
No 186
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=79.09 E-value=1.9 Score=43.99 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=47.6
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.+++++-+..+++.+... ++.+..++|+.+..... ..+.++..+|||+|. +-...+++.+++
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~v~ 350 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR---DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD------LLARGIDVQQVS 350 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT---TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS------SCC--CCGGGCS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc---CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC------ccccCCCccCCC
Confidence 457999999999999888877665 78889999998765443 445556789999994 122346777888
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
+||.
T Consensus 351 ~Vi~ 354 (414)
T 3eiq_A 351 LVIN 354 (414)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8774
No 187
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=79.00 E-value=2.1 Score=50.38 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=67.3
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
.+.+++|+||+++-+..+++.++.+- .++++..++|+++..... ..+.++.++|||||. .+ ...+++.++
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~-p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~-e~GiDip~v 883 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----II-ETGIDIPTA 883 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHC-TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TT-GGGSCCTTE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhC-CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cc-eeeecccCC
Confidence 36789999999998888888877652 267889999998865443 445566799999994 22 345789999
Q ss_pred cEEEEeCcccccCcchHHHHHHhc
Q 008235 332 SLLVVDRLDSLSKGDTLSLIRQSI 355 (573)
Q Consensus 332 ~~lViDEad~ll~~~~l~~Il~~l 355 (573)
++||+..+|.+. ..++.+...+.
T Consensus 884 ~~VIi~~~~~~~-l~~l~Qr~GRv 906 (1151)
T 2eyq_A 884 NTIIIERADHFG-LAQLHQLRGRV 906 (1151)
T ss_dssp EEEEETTTTSSC-HHHHHHHHTTC
T ss_pred cEEEEeCCCCCC-HHHHHHHHhcc
Confidence 999998887532 34444444444
No 188
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=78.28 E-value=4 Score=40.47 Aligned_cols=58 Identities=7% Similarity=-0.109 Sum_probs=29.3
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHH-HHHHHHHHhhh
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK-AAKVRSVCKPL 279 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreL-a~Qi~~~~~~l 279 (573)
|.-+++.+|+| +|||.. ++-++..+....... +.+..++|+.--..+ ..++...+..+
T Consensus 107 G~i~~i~G~~G-sGKT~l-a~~la~~~~~~~~~g---g~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFG-SGKTQL-CHQLSVNVQLPPEKG---GLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTT-SSHHHH-HHHHHHHTTSCGGGT---CCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCC-CCHhHH-HHHHHHHHhcccccC---CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 46678889999 999954 333333322111110 014467777643211 33444444443
No 189
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=77.92 E-value=6.3 Score=40.98 Aligned_cols=18 Identities=17% Similarity=-0.130 Sum_probs=15.3
Q ss_pred CCcEEEEeCCCchhHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (573)
.+.+++..|+| +|||+..
T Consensus 167 ~~~vLL~GppG-tGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPG-TGKSYLA 184 (444)
T ss_dssp CSEEEEECSTT-SSHHHHH
T ss_pred CceEEEECCCC-CCHHHHH
Confidence 37899999999 9999753
No 190
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=77.84 E-value=2 Score=44.55 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=33.4
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHH
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAA 270 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~ 270 (573)
...++++.++|| ||||.. +-+++..+.. .+..++|+=|..|+..
T Consensus 52 ~~~h~~i~G~tG-sGKs~~-~~~li~~~~~---------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATG-TGKSVL-LRELAYTGLL---------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTT-SSHHHH-HHHHHHHHHH---------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCC-CCHHHH-HHHHHHHHHH---------CCCcEEEEeCCCchhH
Confidence 458999999999 999986 3445555543 2567899999988864
No 191
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=77.72 E-value=7.3 Score=43.67 Aligned_cols=75 Identities=9% Similarity=0.103 Sum_probs=56.5
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhh--------hcCCcEEEEeCCCCCHHHHHHHhh--------cCCCcEEEeCHHHHHH
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPL--------KAFGIHTVSLHPGAAIDHQITGLR--------SCEPEFLVSTPERLLK 319 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l--------~~~~i~~~~~~gg~~~~~~~~~l~--------~~~~~IlV~TP~rL~~ 319 (573)
+..+||.+|+++-+.++++.+... ...++.+..++|+.+..++...+. .+...|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 568999999999999998888752 124889999999999877765543 34578999994
Q ss_pred HHHcCCCCCCCccEEEE
Q 008235 320 LVSLKAIDVSGVSLLVV 336 (573)
Q Consensus 320 ~l~~~~~~l~~l~~lVi 336 (573)
.+. ..+++.++.+||-
T Consensus 378 iae-~GidIp~v~~VId 393 (773)
T 2xau_A 378 IAE-TSLTIDGIVYVVD 393 (773)
T ss_dssp HHH-HTCCCTTEEEEEE
T ss_pred HHH-hCcCcCCeEEEEe
Confidence 233 3477888887764
No 192
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=76.84 E-value=5.4 Score=43.47 Aligned_cols=69 Identities=12% Similarity=0.215 Sum_probs=51.7
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEE
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lV 335 (573)
+.++||.|+|++-|..+++.+... ++++..++|. ........++++..+|||||. .+. ..+++. +++||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~---g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v~~-rGiDi~-v~~VI 423 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS---GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----ISE-MGANFR-AGRVI 423 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT---TCCEEEECTT-THHHHTTHHHHSCCSEEEECG-----GGG-TTCCCC-CSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc---CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----HHH-cCcccC-ceEEE
Confidence 447999999999999888887765 7888889875 444455666677899999994 333 446675 77763
No 193
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=76.21 E-value=3.9 Score=44.85 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=50.4
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEE
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLL 334 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~l 334 (573)
.+.++||.++|++-+.++++.++.. ++.+..++|+.+... ..+++.+|||||. .+..+ +++. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~---g~~v~~lHG~l~q~e----r~~~~~~VLVATd-----VaerG-IDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL---GINAVAYYRGLDVSV----IPTIGDVVVVATD-----ALMTG-YTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT---TCCEEEECTTSCGGG----SCSSSCEEEEECT-----THHHH-CCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC---CCcEEEecCCCCHHH----HHhCCCcEEEECC-----hHHcc-CCCC-CcEE
Confidence 3568999999999999988887765 889999999987653 2334679999993 34443 4564 7776
Q ss_pred E
Q 008235 335 V 335 (573)
Q Consensus 335 V 335 (573)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 194
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=76.01 E-value=4.7 Score=42.07 Aligned_cols=16 Identities=6% Similarity=-0.118 Sum_probs=14.0
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
..+++..|+| +|||..
T Consensus 51 ~~vLL~GppG-tGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPG-TGKTTL 66 (447)
T ss_dssp CEEEEECSTT-SSHHHH
T ss_pred cEEEEECCCC-CcHHHH
Confidence 4699999999 999965
No 195
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=75.19 E-value=4.1 Score=43.01 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=26.1
Q ss_pred cEEEEeCcccccC-------------cchHHHHHHhcCCCCcEEEEeccCCc
Q 008235 332 SLLVVDRLDSLSK-------------GDTLSLIRQSISGKPHTVVFNDCLTY 370 (573)
Q Consensus 332 ~~lViDEad~ll~-------------~~~l~~Il~~l~~~~q~l~~SAT~~~ 370 (573)
..|+|||+|.|.. ...+..+++.+.....++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 5899999998875 12344455555556677777777554
No 196
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=75.03 E-value=13 Score=36.93 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=23.0
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEecc
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDC 367 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT 367 (573)
..-.+|||||+|.|.. ...+..+++..+... +++++++
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~-~~Il~~~ 157 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV-KFLLATT 157 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSE-EEEEEES
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCce-EEEEEeC
Confidence 4567999999998864 444555555444433 3444444
No 197
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=74.94 E-value=3.7 Score=41.98 Aligned_cols=72 Identities=7% Similarity=0.101 Sum_probs=52.8
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEE-EeCCCCCHHHHHHHhhcCCCcEEEe----CHHHHHHHHHcCCCCCCC
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTV-SLHPGAAIDHQITGLRSCEPEFLVS----TPERLLKLVSLKAIDVSG 330 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~-~~~gg~~~~~~~~~l~~~~~~IlV~----TP~rL~~~l~~~~~~l~~ 330 (573)
+.++||.|+|+.-|..++..+... |+.+. .++|. ... ...++++..+|||| |. +-...+++.+
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~--~r~-~~~f~~g~~~vLvat~s~T~------~~~~GiDip~ 319 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRF---KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYYG------KLTRGVDLPE 319 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHT---TCCEEESSSCH--HHH-HHHHHTTSCSEEEEECCTTC------CCCCCCCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc---CCceehhhcCc--chH-HHHHhCCCCeEEEEecCcCc------hhhccCcccc
Confidence 357999999999999888888765 78887 56653 333 67777778999999 72 1234578888
Q ss_pred -ccEEEEeCc
Q 008235 331 -VSLLVVDRL 339 (573)
Q Consensus 331 -l~~lViDEa 339 (573)
+++||.-..
T Consensus 320 ~v~~VI~~~~ 329 (414)
T 3oiy_A 320 RIKYVIFWGT 329 (414)
T ss_dssp TCCEEEEESC
T ss_pred ccCEEEEECC
Confidence 888875433
No 198
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=73.45 E-value=28 Score=34.08 Aligned_cols=18 Identities=11% Similarity=-0.123 Sum_probs=13.6
Q ss_pred CCcEEEEeCCCchhHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (573)
++-++++.++| +|||...
T Consensus 104 ~~vi~ivG~~G-sGKTTl~ 121 (306)
T 1vma_A 104 PFVIMVVGVNG-TGKTTSC 121 (306)
T ss_dssp CEEEEEECCTT-SSHHHHH
T ss_pred CeEEEEEcCCC-ChHHHHH
Confidence 34567778999 9999653
No 199
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=73.29 E-value=8.3 Score=39.04 Aligned_cols=16 Identities=0% Similarity=-0.149 Sum_probs=13.1
Q ss_pred CcEEE--EeCCCchhHHHH
Q 008235 218 KDILE--TSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~--~A~TG~SGKTla 234 (573)
..+++ ..|.| +|||..
T Consensus 51 ~~~li~i~G~~G-~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVG-IGKTTL 68 (412)
T ss_dssp EEEEEECTTCCS-SSHHHH
T ss_pred CEEEEeCcCcCC-CCHHHH
Confidence 46777 79999 999965
No 200
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=72.87 E-value=5.6 Score=42.58 Aligned_cols=18 Identities=0% Similarity=-0.261 Sum_probs=15.6
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.|..+++..|+| +|||..
T Consensus 107 ~g~~vll~Gp~G-tGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPG-VGKTSL 124 (543)
T ss_dssp CSCEEEEESSSS-SSHHHH
T ss_pred CCCEEEEECCCC-CCHHHH
Confidence 467899999999 999964
No 201
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=71.94 E-value=4.2 Score=43.07 Aligned_cols=120 Identities=16% Similarity=0.155 Sum_probs=65.3
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHH---HHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH---QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~---~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.|+++.-|..++..+... ++.+.+++|+..... ....+..+..+|||||- ++. ..+++.+++
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~---~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~-~GiDip~v~ 427 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTAD---GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIA-RGIDVSQVN 427 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTT---TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTTCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhh-cCCCccCCC
Confidence 457999999999998888877664 778888999876433 23555666789999994 333 457888899
Q ss_pred EEEEeCcccccC-cchHHHHHHhcCC-------CCcEEEEeccCCccHHHHHHHHhcCCc
Q 008235 333 LLVVDRLDSLSK-GDTLSLIRQSISG-------KPHTVVFNDCLTYTSVPAVQNLLLGSI 384 (573)
Q Consensus 333 ~lViDEad~ll~-~~~l~~Il~~l~~-------~~q~l~~SAT~~~~~~~~~~~~l~~~~ 384 (573)
+||....-.... ...+..+++.+.. ..-+++++..-..........++...+
T Consensus 428 ~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i 487 (508)
T 3fho_A 428 LVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPI 487 (508)
T ss_dssp EEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCC
T ss_pred EEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCc
Confidence 988533321100 1344455555431 122344443322333444455555544
No 202
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=71.92 E-value=7.6 Score=37.86 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=51.0
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
.+..+||.+++++-+..+++.+. .+..++|+.+..... ..+.++..+|||+|. .+. ..+++..+
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~-------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~~ 285 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD-------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS-RGLDIPLV 285 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT-------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH-TTCCCCCB
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh-------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc-cCCCccCC
Confidence 46679999999998887766544 356788888765443 444556789999994 333 35788889
Q ss_pred cEEEEeC
Q 008235 332 SLLVVDR 338 (573)
Q Consensus 332 ~~lViDE 338 (573)
+++|.-.
T Consensus 286 ~~Vi~~~ 292 (337)
T 2z0m_A 286 EKVINFD 292 (337)
T ss_dssp SEEEESS
T ss_pred CEEEEec
Confidence 9888643
No 203
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=71.73 E-value=2.5 Score=46.72 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=51.7
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhh---hcCCcEEEEeCCC--------CCHHHHH---HHhhcCCCcEEEeCHHHHHHHH
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPL---KAFGIHTVSLHPG--------AAIDHQI---TGLRSCEPEFLVSTPERLLKLV 321 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l---~~~~i~~~~~~gg--------~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l 321 (573)
+.++||.++|+..+..+.+.+... ...|+.+..++|+ ++..++. ..++++..+|||||- +
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 678999999999999999988864 3338999999998 7765543 445566789999993 2
Q ss_pred HcCCCCCCCccEEEE
Q 008235 322 SLKAIDVSGVSLLVV 336 (573)
Q Consensus 322 ~~~~~~l~~l~~lVi 336 (573)
-...+++.++++||.
T Consensus 474 ~~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 474 AEEGLDIKECNIVIR 488 (699)
T ss_dssp CCTTSCCCSCCCCEE
T ss_pred cccCCccccCCEEEE
Confidence 234578888998873
No 204
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=70.58 E-value=9.4 Score=40.27 Aligned_cols=75 Identities=15% Similarity=0.271 Sum_probs=44.9
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcC-CcEEEEeCC--------CCCHHHH---HHHhhc-CCCcEEEeCHHHHHHHHH
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHP--------GAAIDHQ---ITGLRS-CEPEFLVSTPERLLKLVS 322 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~-~i~~~~~~g--------g~~~~~~---~~~l~~-~~~~IlV~TP~rL~~~l~ 322 (573)
+.++||.|+++.-+..+.+.+...... ++.+..++| +++..+. ...++. +..+|||||. .+
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~- 462 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----VA- 462 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC-----CT-
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----hh-
Confidence 568999999999999999999876321 345555554 5554433 344455 5789999993 22
Q ss_pred cCCCCCCCccEEEE
Q 008235 323 LKAIDVSGVSLLVV 336 (573)
Q Consensus 323 ~~~~~l~~l~~lVi 336 (573)
...+++..+++||.
T Consensus 463 ~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 463 DEGIDIAECNLVIL 476 (555)
T ss_dssp TCCEETTSCSEEEE
T ss_pred hcCCccccCCEEEE
Confidence 23477888888775
No 205
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=68.97 E-value=3.4 Score=35.41 Aligned_cols=20 Identities=5% Similarity=0.066 Sum_probs=16.7
Q ss_pred HhcCCcEEEEeCCCchhHHHH
Q 008235 214 YSSAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 214 il~g~dvl~~A~TG~SGKTla 234 (573)
+..+.++++..|+| +|||..
T Consensus 24 ~~~~~~vll~G~~G-tGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAG-SPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETT-CCHHHH
T ss_pred hCCCCcEEEECCCC-ccHHHH
Confidence 34568999999999 999964
No 206
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=68.55 E-value=1.1e+02 Score=32.22 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=28.5
Q ss_pred CccEEEEeCcccccC----cchHHHHH---Hhc-C--CCCcEEEEeccCCccHHHHHHHHhc
Q 008235 330 GVSLLVVDRLDSLSK----GDTLSLIR---QSI-S--GKPHTVVFNDCLTYTSVPAVQNLLL 381 (573)
Q Consensus 330 ~l~~lViDEad~ll~----~~~l~~Il---~~l-~--~~~q~l~~SAT~~~~~~~~~~~~l~ 381 (573)
++++++||=+-++.. ..++..+. +.+ + +..-+++++||........++.|..
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~ 436 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHE 436 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHh
Confidence 346777777765543 22333333 322 2 2223567888887666666666543
No 207
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=68.24 E-value=19 Score=35.61 Aligned_cols=50 Identities=10% Similarity=0.075 Sum_probs=34.5
Q ss_pred ccEEEEeCcccccC----cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHHHh
Q 008235 331 VSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL 380 (573)
Q Consensus 331 l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~~l 380 (573)
.+++++|.+.++-. ..++..+...+.++..++++.++....+...++.|.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 45677888876543 455556666666777788888888777777776664
No 208
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=68.22 E-value=3.7 Score=35.21 Aligned_cols=20 Identities=5% Similarity=-0.168 Sum_probs=16.9
Q ss_pred hcCCcEEEEeCCCchhHHHHH
Q 008235 215 SSAKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf 235 (573)
..+.++++..|+| +|||...
T Consensus 22 ~~~~~vll~G~~G-tGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPG-TGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTT-SSHHHHH
T ss_pred CCCCCEEEECCCC-CCHHHHH
Confidence 4568999999999 9999753
No 209
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=67.47 E-value=20 Score=37.80 Aligned_cols=17 Identities=6% Similarity=-0.160 Sum_probs=13.4
Q ss_pred CcEEEEeCCCchhHHHHH
Q 008235 218 KDILETSGSSSTIVQIAW 235 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (573)
+-+++++++| +|||...
T Consensus 102 ~vI~ivG~~G-vGKTTl~ 118 (504)
T 2j37_W 102 NVIMFVGLQG-SGKTTTC 118 (504)
T ss_dssp EEEEEECSTT-SSHHHHH
T ss_pred eEEEEECCCC-CCHHHHH
Confidence 4577788999 9999654
No 210
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=66.91 E-value=26 Score=33.56 Aligned_cols=95 Identities=7% Similarity=0.075 Sum_probs=60.6
Q ss_pred CCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH---HHH
Q 008235 225 GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITG 301 (573)
Q Consensus 225 ~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~---~~~ 301 (573)
... +||..+ ++-++..+.. .+.++||.+.++..+..+...+... .|+.+..++|+++.... ...
T Consensus 92 ~~~-s~K~~~-L~~ll~~~~~---------~~~kvlIFs~~~~~~~~l~~~L~~~--~g~~~~~l~G~~~~~~R~~~i~~ 158 (271)
T 1z5z_A 92 VRR-SGKMIR-TMEIIEEALD---------EGDKIAIFTQFVDMGKIIRNIIEKE--LNTEVPFLYGELSKKERDDIISK 158 (271)
T ss_dssp STT-CHHHHH-HHHHHHHHHH---------TTCCEEEEESCHHHHHHHHHHHHHH--HCSCCCEECTTSCHHHHHHHHHH
T ss_pred ccc-CHHHHH-HHHHHHHHHh---------CCCeEEEEeccHHHHHHHHHHHHHh--cCCcEEEEECCCCHHHHHHHHHH
Confidence 345 889644 4555555433 2568999999999988888877652 26778889999875443 344
Q ss_pred hhcC-CCc-EEEeCHHHHHHHHHcCCCCCCCccEEEEeC
Q 008235 302 LRSC-EPE-FLVSTPERLLKLVSLKAIDVSGVSLLVVDR 338 (573)
Q Consensus 302 l~~~-~~~-IlV~TP~rL~~~l~~~~~~l~~l~~lViDE 338 (573)
++.+ .+. +|++|-- -...+++..+.+||+=+
T Consensus 159 F~~~~~~~v~L~st~~------~g~Glnl~~a~~VI~~d 191 (271)
T 1z5z_A 159 FQNNPSVKFIVLSVKA------GGFGINLTSANRVIHFD 191 (271)
T ss_dssp HHHCTTCCEEEEECCT------TCCCCCCTTCSEEEECS
T ss_pred hcCCCCCCEEEEehhh------hcCCcCcccCCEEEEEC
Confidence 4553 355 5666621 12346777777776533
No 211
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=66.08 E-value=69 Score=32.89 Aligned_cols=18 Identities=0% Similarity=-0.331 Sum_probs=13.2
Q ss_pred CCcEEEEeCCCchhHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (573)
++-++++.++| +|||...
T Consensus 98 ~~vi~i~G~~G-sGKTT~~ 115 (425)
T 2ffh_A 98 RNLWFLVGLQG-SGKTTTA 115 (425)
T ss_dssp SEEEEEECCTT-SSHHHHH
T ss_pred CeEEEEECCCC-CCHHHHH
Confidence 34466678999 9999653
No 212
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=66.05 E-value=1.2 Score=46.70 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=0.0
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.|||+.-|..++..+... ++.+..++|+.+..... ..+..+..+|||||. .+. ..+++.++.
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~---~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~-~GlDip~v~ 403 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE---GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA-RGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC---CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccc-cCCccccCC
Confidence 457999999999988888777665 78888899988755433 444556789999993 333 346777888
Q ss_pred EEE
Q 008235 333 LLV 335 (573)
Q Consensus 333 ~lV 335 (573)
+||
T Consensus 404 ~VI 406 (479)
T 3fmp_B 404 VVI 406 (479)
T ss_dssp ---
T ss_pred EEE
Confidence 876
No 213
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=65.77 E-value=11 Score=39.75 Aligned_cols=76 Identities=13% Similarity=0.284 Sum_probs=33.2
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhc---------CCcEEEEeCCCCCHHHH---HHHhhc-CCCcEEEeCHHHHHHHH
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKA---------FGIHTVSLHPGAAIDHQ---ITGLRS-CEPEFLVSTPERLLKLV 321 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~---------~~i~~~~~~gg~~~~~~---~~~l~~-~~~~IlV~TP~rL~~~l 321 (573)
.+.++||.|+++..+..+.+.+..... .|.....++||++..+. ...++. +.++|||||- .+
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~ 463 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VA 463 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----ch
Confidence 366899999999999999999877521 13333444556654443 344455 5689999993 22
Q ss_pred HcCCCCCCCccEEEE
Q 008235 322 SLKAIDVSGVSLLVV 336 (573)
Q Consensus 322 ~~~~~~l~~l~~lVi 336 (573)
. ..+++..+++||.
T Consensus 464 ~-~GiDip~v~~VI~ 477 (556)
T 4a2p_A 464 D-EGIDIVQCNLVVL 477 (556)
T ss_dssp ----------CEEEE
T ss_pred h-cCCCchhCCEEEE
Confidence 2 3467888888875
No 214
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=65.65 E-value=6.5 Score=43.24 Aligned_cols=78 Identities=13% Similarity=0.236 Sum_probs=43.8
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcC-CcEEEEeCC--------CCCHHHHH---HHhhc-CCCcEEEeCHHHHHHHH
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHP--------GAAIDHQI---TGLRS-CEPEFLVSTPERLLKLV 321 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~-~i~~~~~~g--------g~~~~~~~---~~l~~-~~~~IlV~TP~rL~~~l 321 (573)
.+.++||.|++++-|..+.+.+.....+ ++++..++| |.+..++. ..++. +..+|||||- +
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~------v 470 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS------V 470 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE------S
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec------h
Confidence 3568999999999999999988876322 367777755 66654443 34444 5789999993 2
Q ss_pred HcCCCCCCCccEEEEeC
Q 008235 322 SLKAIDVSGVSLLVVDR 338 (573)
Q Consensus 322 ~~~~~~l~~l~~lViDE 338 (573)
-...+++.++++||.=.
T Consensus 471 ~~~GiDip~v~~VI~~d 487 (696)
T 2ykg_A 471 ADEGIDIAQCNLVILYE 487 (696)
T ss_dssp SCCC---CCCSEEEEES
T ss_pred hhcCCcCccCCEEEEeC
Confidence 23457888999988633
No 215
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=65.18 E-value=5 Score=41.96 Aligned_cols=69 Identities=12% Similarity=0.217 Sum_probs=48.8
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEE
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lV 335 (573)
+.++||.|||+.-|..+++.+... ++.+..++|. ........+..+..+|||||- .+ ...+++.. .+||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~---g~~v~~lh~~-~R~~~~~~f~~g~~~iLVaT~-----v~-~~GiDip~-~~VI 258 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA---GKKVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----IS-EMGANFGA-SRVI 258 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT---TCCEEEESTT-CCCCCGGGSSSCCCSEEEESS-----CC----CCCSC-SEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc---CCcEEecCHH-HHHHHHhhccCCCceEEEECC-----hH-HhCeecCC-CEEE
Confidence 457999999999999888888776 7888888885 333334555666789999993 22 23467777 6555
No 216
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=65.12 E-value=3.6 Score=41.48 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=24.8
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEccc
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 265 (573)
|.-+++..|.| +|||. +++.++..+.. .+..++|+..-
T Consensus 61 G~i~~I~GppG-sGKST-Lal~la~~~~~---------~gg~VlyId~E 98 (356)
T 3hr8_A 61 GRIVEIFGQES-SGKTT-LALHAIAEAQK---------MGGVAAFIDAE 98 (356)
T ss_dssp TEEEEEEESTT-SSHHH-HHHHHHHHHHH---------TTCCEEEEESS
T ss_pred CcEEEEECCCC-CCHHH-HHHHHHHHHHh---------cCCeEEEEecc
Confidence 46678889999 99995 45555554433 24457777653
No 217
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=62.58 E-value=6.2 Score=36.72 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=29.2
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.|.-+++.+|+| +|||.. ++-++..+.. .+..++++.-. +-..++.+.+..+
T Consensus 22 ~G~~~~i~G~~G-sGKTtl-~~~~~~~~~~---------~~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPG-TGKTIF-SQQFLWNGLK---------MGEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTT-SSHHHH-HHHHHHHHHH---------TTCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCC-CCHHHH-HHHHHHHHHh---------cCCeEEEEEcc-CCHHHHHHHHHHc
Confidence 456778889999 999964 3333333332 13356666532 2334555554433
No 218
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=62.51 E-value=13 Score=42.70 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=63.9
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH---HHHhhcCC--CcEEEeCHHHHHHHHHcCCCCCC
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCE--PEFLVSTPERLLKLVSLKAIDVS 329 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~---~~~l~~~~--~~IlV~TP~rL~~~l~~~~~~l~ 329 (573)
.+.++||.|++++-+..+...+... .|+.+..++|+++.... ...++.+. ++|||+|. . -...+++.
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~--~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-v-----~~~GlDl~ 573 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER--EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-I-----GSEGRNFQ 573 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT--TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-C-----TTCSSCCT
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH--cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-h-----hhcCCCcc
Confidence 4668999999999998888877742 28899999999875433 35556644 99999992 1 23457888
Q ss_pred CccEEEEeCcccccCcchHHHHHHhc
Q 008235 330 GVSLLVVDRLDSLSKGDTLSLIRQSI 355 (573)
Q Consensus 330 ~l~~lViDEad~ll~~~~l~~Il~~l 355 (573)
.+.+||+-+.+ .+...+.+.+.+.
T Consensus 574 ~~~~VI~~d~p--~~~~~~~Q~~GR~ 597 (968)
T 3dmq_A 574 FASHMVMFDLP--FNPDLLEQRIGRL 597 (968)
T ss_dssp TCCEEECSSCC--SSHHHHHHHHHTT
T ss_pred cCcEEEEecCC--CCHHHHHHHhhcc
Confidence 99999987665 3333444444443
No 219
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=61.98 E-value=64 Score=31.16 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=27.2
Q ss_pred CCccEEEEeCccccc-C---cchHHHHHHhcCCCCcEEEEeccCCccHHHHHHH
Q 008235 329 SGVSLLVVDRLDSLS-K---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQN 378 (573)
Q Consensus 329 ~~l~~lViDEad~ll-~---~~~l~~Il~~l~~~~q~l~~SAT~~~~~~~~~~~ 378 (573)
.+.++||||++-.+. + ...+..+...+.+..-++++.++........++.
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 232 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 232 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHH
Confidence 456899999994433 3 3344444444444444555677654433333433
No 220
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=61.94 E-value=11 Score=43.72 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=53.5
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEe----CHHHHHHHHHcCCCCCCCc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVS----TPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~----TP~rL~~~l~~~~~~l~~l 331 (573)
+.++||.|+|+.-|..+++.+... +++..++|+.. .....++.+..+|||| |- .+. ..+++.++
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~----~~v~~lhg~~~--~~l~~F~~G~~~VLVaTas~Td-----v~~-rGIDip~V 342 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK----FRIGIVTATKK--GDYEKFVEGEIDHLIGTAHYYG-----TLV-RGLDLPER 342 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS----SCEEECTTSSS--HHHHHHHHTSCSEEEEECC------------CCSCCTTT
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc----cCeeEEeccHH--HHHHHHHcCCCcEEEEecCCCC-----eeE-eccccCCc
Confidence 467999999999988877766554 78899999874 4456677778999999 52 233 46889995
Q ss_pred -cEEEEeCcc
Q 008235 332 -SLLVVDRLD 340 (573)
Q Consensus 332 -~~lViDEad 340 (573)
++||.-.+.
T Consensus 343 I~~VI~~~~P 352 (1054)
T 1gku_B 343 IRFAVFVGCP 352 (1054)
T ss_dssp CCEEEEESCC
T ss_pred ccEEEEeCCC
Confidence 998876665
No 221
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=61.67 E-value=82 Score=28.09 Aligned_cols=129 Identities=10% Similarity=0.033 Sum_probs=49.5
Q ss_pred HHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchh---ccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCc-EEE
Q 008235 212 KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKE---KEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGI-HTV 287 (573)
Q Consensus 212 p~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~---~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i-~~~ 287 (573)
++.+.|-.+-+.+..| -|=|+.+.+|+...-..... .......+.++||+-........+...+..+ |+ .+.
T Consensus 15 ~~~~hgG~i~v~S~~g-~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~---g~~~v~ 90 (206)
T 3mm4_A 15 PRGSHMASTDSESETR-VKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM---GVSEVE 90 (206)
T ss_dssp C----------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT---TCSEEE
T ss_pred cccccCCceeeeccCC-CcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc---CCCeee
Confidence 3456778888889999 99999999997543221110 1111224568888888877776666666654 44 333
Q ss_pred EeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcC--------CCCCCCccEEEEeCcccccC---cchHHHHHHh--
Q 008235 288 SLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK--------AIDVSGVSLLVVDRLDSLSK---GDTLSLIRQS-- 354 (573)
Q Consensus 288 ~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~--------~~~l~~l~~lViDEad~ll~---~~~l~~Il~~-- 354 (573)
.+. +....++++... ...-...++||+|=. |.+ .+.+..|...
T Consensus 91 ~a~----------------------~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~~G~el~~~lr~~~~ 146 (206)
T 3mm4_A 91 QCD----------------------SGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEMDGYEATREIRKVEK 146 (206)
T ss_dssp EES----------------------SHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSSCHHHHHHHHHHHHH
T ss_pred eeC----------------------CHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCCCHHHHHHHHHhhhh
Confidence 332 223333333321 122234678888832 333 4444444443
Q ss_pred -cCCCCcEEEEeccC
Q 008235 355 -ISGKPHTVVFNDCL 368 (573)
Q Consensus 355 -l~~~~q~l~~SAT~ 368 (573)
..+...++++|+..
T Consensus 147 ~~~~~~piI~ls~~~ 161 (206)
T 3mm4_A 147 SYGVRTPIIAVSGHD 161 (206)
T ss_dssp TTTCCCCEEEEESSC
T ss_pred hcCCCCcEEEEECCC
Confidence 24677899999876
No 222
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=61.66 E-value=12 Score=42.00 Aligned_cols=77 Identities=13% Similarity=0.228 Sum_probs=37.1
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhc---------CCcEEEEeCCCCCHHHHH---HHhhc-CCCcEEEeCHHHHHHHH
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKA---------FGIHTVSLHPGAAIDHQI---TGLRS-CEPEFLVSTPERLLKLV 321 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~---------~~i~~~~~~gg~~~~~~~---~~l~~-~~~~IlV~TP~rL~~~l 321 (573)
.+.++||.|+++..+..+.+.+..... .|.....++||++...+. ..++. +.++|||||- .+
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~-----~~ 704 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VA 704 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEEC-----C-
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC-----ch
Confidence 367899999999999999999976421 134444556666654433 44455 6789999993 22
Q ss_pred HcCCCCCCCccEEEEe
Q 008235 322 SLKAIDVSGVSLLVVD 337 (573)
Q Consensus 322 ~~~~~~l~~l~~lViD 337 (573)
...+++..+++||.=
T Consensus 705 -~~GIDlp~v~~VI~y 719 (797)
T 4a2q_A 705 -DEGIDIVQCNLVVLY 719 (797)
T ss_dssp -------CCCSEEEEE
T ss_pred -hcCCCchhCCEEEEe
Confidence 234678888888753
No 223
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=61.44 E-value=20 Score=39.56 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=53.0
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhh-c--------------------------------CCcEEEEeCCCCCHHHHHH--
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLK-A--------------------------------FGIHTVSLHPGAAIDHQIT-- 300 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~-~--------------------------------~~i~~~~~~gg~~~~~~~~-- 300 (573)
+..+||.+|++.-+..+...+.... . ....+..++||.+..++..
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 5679999999999998888876531 1 0124788999998766543
Q ss_pred -HhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEE
Q 008235 301 -GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVV 336 (573)
Q Consensus 301 -~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lVi 336 (573)
.+..+...|||||. .+ ...+++..+.+||-
T Consensus 332 ~~f~~g~~~vlvaT~-----~l-~~Gidip~~~~VI~ 362 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----TL-AAGVNLPARTVIIG 362 (715)
T ss_dssp HHHHTTCSCEEEECG-----GG-GGSSCCCBSEEEEC
T ss_pred HHHHcCCCeEEEECh-----HH-hcccCCCceEEEEe
Confidence 34456789999994 22 34577888877553
No 224
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=60.20 E-value=13 Score=45.98 Aligned_cols=44 Identities=9% Similarity=-0.059 Sum_probs=29.7
Q ss_pred HHHHhc------CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEccc
Q 008235 211 WKCYSS------AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265 (573)
Q Consensus 211 ip~il~------g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 265 (573)
+..++. |+.+++..|+| +|||....--+. .... .|.+++|+..-
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppG-tGKT~LA~ala~-ea~~---------~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPES-SGKTTLTLQVIA-AAQR---------EGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTT-SSHHHHHHHHHH-HHHT---------TTCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCC-CCHHHHHHHHHH-HHHH---------cCCcEEEEEcc
Confidence 556665 68999999999 999976433222 2221 36678888764
No 225
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=60.14 E-value=12 Score=36.84 Aligned_cols=17 Identities=0% Similarity=-0.435 Sum_probs=13.7
Q ss_pred CCcEEEEeCCCchhHHHH
Q 008235 217 AKDILETSGSSSTIVQIA 234 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (573)
|.-+++.+++| +|||..
T Consensus 98 g~i~~i~G~~g-sGKT~l 114 (322)
T 2i1q_A 98 QSVTEFAGVFG-SGKTQI 114 (322)
T ss_dssp TEEEEEEESTT-SSHHHH
T ss_pred CeEEEEECCCC-CCHHHH
Confidence 35678889999 999954
No 226
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=60.00 E-value=5.7 Score=37.00 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=16.1
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAWIVATA 240 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l 240 (573)
|.-+++.+++| +|||. |++-++
T Consensus 30 G~l~~i~G~pG-~GKT~-l~l~~~ 51 (251)
T 2zts_A 30 GTTVLLTGGTG-TGKTT-FAAQFI 51 (251)
T ss_dssp TCEEEEECCTT-SSHHH-HHHHHH
T ss_pred CeEEEEEeCCC-CCHHH-HHHHHH
Confidence 46678889999 99994 444443
No 227
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=59.42 E-value=10 Score=44.29 Aligned_cols=74 Identities=8% Similarity=0.121 Sum_probs=56.9
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEE-EeCCCCCHHHHHHHhhcCCCcEEEe----CHHHHHHHHHcCCCCCCC
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTV-SLHPGAAIDHQITGLRSCEPEFLVS----TPERLLKLVSLKAIDVSG 330 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~-~~~gg~~~~~~~~~l~~~~~~IlV~----TP~rL~~~l~~~~~~l~~ 330 (573)
+.++||.|||++-|..+...+... |+.+. .++|. ... ...++++..+|||| |- .+ ...+++.+
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~---g~~~~~~lhg~--rr~-l~~F~~G~~~VLVatas~Td-----vl-arGIDip~ 376 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRF---KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYYG-----KL-TRGVDLPE 376 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHT---TCCEEESSSSH--HHH-HHHHHHTSCSEEEEETTTHH-----HH-CCSCCCTT
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC---CCCeeeEecCc--HHH-HHHHHCCCCCEEEEecCCCC-----ee-EecCcCCC
Confidence 357999999999999888887765 78887 77762 334 67777778999999 62 23 45588999
Q ss_pred -ccEEEEeCccc
Q 008235 331 -VSLLVVDRLDS 341 (573)
Q Consensus 331 -l~~lViDEad~ 341 (573)
+++||.=..-.
T Consensus 377 ~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 377 RIKYVIFWGTPS 388 (1104)
T ss_dssp TCCEEEEESCCE
T ss_pred CCCEEEEECCCC
Confidence 99999776665
No 228
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=56.01 E-value=1.5e+02 Score=28.68 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=23.1
Q ss_pred CcEEEEecChhhHHHHHHHHHHCCCC
Q 008235 434 LKVLYIVGKDSKFQNLVSTLKCKGYS 459 (573)
Q Consensus 434 ~k~lIF~~s~~~~~~l~~~L~~~g~~ 459 (573)
....|||.+...+.-+...|...|+.
T Consensus 205 ~~~aI~~~~d~~a~g~~~al~~~G~~ 230 (350)
T 3h75_A 205 KTQLVWSANDEMALGAMQAARELGRK 230 (350)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CcCEEEECChHHHHHHHHHHHHcCCC
Confidence 57889999999999999999999876
No 229
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=55.45 E-value=2.5 Score=42.64 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCcc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~ 332 (573)
+.++||.|++++-+..+++.+... ++.+..++|+.+..... ..+.++...|+|+|. .+. ..+++..++
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gldi~~~~ 329 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND---KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA-RGIDVQQVS 329 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc---CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-----hhh-cCCCcccCC
Confidence 458999999999988887776654 77888899987654433 334455688999994 222 346677777
Q ss_pred EEEE
Q 008235 333 LLVV 336 (573)
Q Consensus 333 ~lVi 336 (573)
++|.
T Consensus 330 ~Vi~ 333 (394)
T 1fuu_A 330 LVIN 333 (394)
T ss_dssp ----
T ss_pred EEEE
Confidence 7764
No 230
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=55.31 E-value=22 Score=36.66 Aligned_cols=17 Identities=12% Similarity=-0.167 Sum_probs=13.9
Q ss_pred CcEEEEeCCCchhHHHHH
Q 008235 218 KDILETSGSSSTIVQIAW 235 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (573)
+.++++.++| +|||...
T Consensus 100 ~vI~ivG~~G-vGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQG-SGKTTTA 116 (432)
T ss_dssp CCEEEECCSS-SSTTHHH
T ss_pred eEEEEECCCC-CCHHHHH
Confidence 5788889999 9999654
No 231
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=55.17 E-value=19 Score=44.60 Aligned_cols=46 Identities=11% Similarity=-0.013 Sum_probs=29.7
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHH
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~ 273 (573)
.|+.++++.|+| +|||.....-+.+.+. .|-.++|+.- -++..+++
T Consensus 1080 ~g~~vll~G~~G-tGKT~la~~~~~ea~k----------~Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPES-SGKTTLTLQVIAAAQR----------EGKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTT-SSHHHHHHHHHHHHHT----------TTCCEEEECT-TSCCCHHH
T ss_pred CCcEEEEECCCC-CCHHHHHHHHHHHHHH----------cCCeEEEEEc-cccHHHHH
Confidence 568999999999 9999764433333322 3556777753 34445555
No 232
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=54.27 E-value=13 Score=29.97 Aligned_cols=34 Identities=18% Similarity=0.041 Sum_probs=28.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~ 467 (573)
..+++|||.+-..+...+..|...|+++..+ .|.
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l-~GG 88 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDV-EGG 88 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEEEE-TTH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEEEE-cCc
Confidence 5799999999999999999999999976654 553
No 233
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=53.47 E-value=12 Score=30.19 Aligned_cols=31 Identities=10% Similarity=0.070 Sum_probs=27.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCCeeee
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSISTG 463 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~ 463 (573)
..+++|||.+-..+...+..|...|+.+..+
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l 86 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNV 86 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEe
Confidence 6799999999999999999999999988764
No 234
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=53.42 E-value=30 Score=37.09 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=53.0
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhc-----CCcEEEEeCCCCCH--HHHHHHhhcCCCc---EEEeCHHHHHHHHHcC
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKA-----FGIHTVSLHPGAAI--DHQITGLRSCEPE---FLVSTPERLLKLVSLK 324 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~-----~~i~~~~~~gg~~~--~~~~~~l~~~~~~---IlV~TP~rL~~~l~~~ 324 (573)
.+.++||.|++++-|..+++.+..+.. .+-.+..++|.... ...+..++++..+ |+|+|- ++ ..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l-~~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LL-TT 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TT-TT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hh-hc
Confidence 357899999999999999999877521 23335667777653 2233555553333 777772 22 23
Q ss_pred CCCCCCccEEEEeCc
Q 008235 325 AIDVSGVSLLVVDRL 339 (573)
Q Consensus 325 ~~~l~~l~~lViDEa 339 (573)
.+++..+.+||++..
T Consensus 512 GiDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 512 GVDAPTCKNVVLARV 526 (590)
T ss_dssp TCCCTTEEEEEEESC
T ss_pred CccchheeEEEEEec
Confidence 478899999998655
No 235
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=53.02 E-value=26 Score=38.68 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=52.4
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhh-hc-----------------------------CCcEEEEeCCCCCHHHHH---HHh
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPL-KA-----------------------------FGIHTVSLHPGAAIDHQI---TGL 302 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l-~~-----------------------------~~i~~~~~~gg~~~~~~~---~~l 302 (573)
+..+||.||||.-+..+...+... .. +...+..++||.+..++. ..+
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 567999999999998888877653 11 012478899999876654 344
Q ss_pred hcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeC
Q 008235 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDR 338 (573)
Q Consensus 303 ~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDE 338 (573)
..+...|||||. .+ ...+++..+.+ |||.
T Consensus 317 ~~g~~~vlvaT~-----~l-~~Gvdip~~~~-VI~~ 345 (720)
T 2zj8_A 317 RKGIIKAVVATP-----TL-SAGINTPAFRV-IIRD 345 (720)
T ss_dssp HTTSSCEEEECS-----TT-GGGCCCCBSEE-EECC
T ss_pred HCCCCeEEEECc-----Hh-hccCCCCceEE-EEcC
Confidence 556789999994 12 23467777776 5553
No 236
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=52.91 E-value=62 Score=37.42 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=22.8
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhh
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLK 280 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~ 280 (573)
.+.++||+|++++-|..+++.+..+.
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhh
Confidence 45689999999999999999998874
No 237
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=52.83 E-value=1.2e+02 Score=26.51 Aligned_cols=87 Identities=16% Similarity=0.032 Sum_probs=55.1
Q ss_pred EEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHHHHHHHHhcCCCCC
Q 008235 404 VNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVEADGRKRP 483 (573)
Q Consensus 404 ~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~l~~F~~~g~~~~ 483 (573)
+..+.+..+-...+.+.+.. ... . ...+-|.|.+...+..+...|...|+++..+..++ ..| ...+
T Consensus 37 ~~~~~~~~~e~~~i~~~I~~-~~~-g---~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~-----~~~----~~~v 102 (174)
T 3dmn_A 37 VVVTPNFEAGVDQVVDQLAM-NDS-E---RDTTAIIGKSLAECEALTKALKARGEQVTLIQTEN-----QRL----APGV 102 (174)
T ss_dssp EEEESSHHHHHHHHHHHHHH-HHH-T---TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC------CC----CSSE
T ss_pred EEEeCCHHHHHHHHHHHHHH-hcc-C---CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccc-----ccc----CCCe
Confidence 44454555666667777766 322 2 46788999999999999999999999887543222 012 2333
Q ss_pred eEEEEeccccCCCccCCCCEEEeCCC
Q 008235 484 AVSMIDKDHISTAELEEYEVVIVPDF 509 (573)
Q Consensus 484 l~~lvd~~s~rGlDip~v~~VI~~d~ 509 (573)
.+. + +..+.|+.++ .||.+++
T Consensus 103 ~v~-t-~~~~KGlEf~---~V~~~~~ 123 (174)
T 3dmn_A 103 IVV-P-SFLAKGLEFD---AVIVWNA 123 (174)
T ss_dssp EEE-E-GGGCTTCCEE---EEEEETC
T ss_pred EEE-E-ccccCCcCCC---EEEEecC
Confidence 322 3 5545599875 5666554
No 238
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=52.78 E-value=23 Score=40.13 Aligned_cols=16 Identities=6% Similarity=-0.261 Sum_probs=13.7
Q ss_pred cEEEEeCCCchhHHHHH
Q 008235 219 DILETSGSSSTIVQIAW 235 (573)
Q Consensus 219 dvl~~A~TG~SGKTlaf 235 (573)
.+++..||| +|||...
T Consensus 590 ~vLl~Gp~G-tGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTG-VGKTELA 605 (854)
T ss_dssp EEEEBSCSS-SSHHHHH
T ss_pred EEEEECCCC-CCHHHHH
Confidence 689999999 9999753
No 239
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=52.47 E-value=55 Score=29.51 Aligned_cols=72 Identities=7% Similarity=-0.021 Sum_probs=46.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHHC-----CCCeeeecCCC--HHHHHHHHHhcCCCCCeEEEE----eccccCCCccCCC
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCK-----GYSISTGSNCI--VSHIKNSVEADGRKRPAVSMI----DKDHISTAELEEY 501 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~-----g~~~~~~~~~~--~~~~l~~F~~~g~~~~l~~lv----d~~s~rGlDip~v 501 (573)
..++||.|+++.-+..+++.+... ++.+..+ +|+ .....+.+ ..+...+++++. +...-..+++.++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~~~~~~-~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVF-FGGLSIKKDEEVL-KKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEE-SCCSCHHHHHHHH-HHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEE-eCCCChHHHHHHH-hcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 458999999999999998887765 5666654 443 33445555 455556655511 1111125677888
Q ss_pred CEEEe
Q 008235 502 EVVIV 506 (573)
Q Consensus 502 ~~VI~ 506 (573)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 240
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=51.53 E-value=18 Score=39.82 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=51.6
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhh-hc--------------------------CCcEEEEeCCCCCHHHHHH---HhhcC
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPL-KA--------------------------FGIHTVSLHPGAAIDHQIT---GLRSC 305 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l-~~--------------------------~~i~~~~~~gg~~~~~~~~---~l~~~ 305 (573)
+..+||.+||+.-+..+...+... .. .+..+..++||.+..++.. .+..+
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 557999999999998888777653 10 0124677899998765543 34456
Q ss_pred CCcEEEeCHHHHHHHHHcCCCCCCCccEEEE
Q 008235 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVV 336 (573)
Q Consensus 306 ~~~IlV~TP~rL~~~l~~~~~~l~~l~~lVi 336 (573)
...|||||. .-...+++..+.+||-
T Consensus 322 ~~~vlvaT~------~l~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 322 NIKVVVATP------TLAAGVNLPARRVIVR 346 (702)
T ss_dssp SCCEEEECS------TTTSSSCCCBSEEEEC
T ss_pred CCeEEEECc------HHhccCCCCceEEEEc
Confidence 789999994 2234577888877543
No 241
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=51.44 E-value=10 Score=38.18 Aligned_cols=25 Identities=0% Similarity=-0.296 Sum_probs=19.1
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..+++|.|..+. .+|| ||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTG-SGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTG-AGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTT-SSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCC-CCccEEe
Confidence 45667899886555 5999 9999774
No 242
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=50.93 E-value=13 Score=29.48 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=28.0
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCCeeeecCC
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC 466 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~ 466 (573)
..+++|||.+-..+...+..|...|+++..+ .|
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l-~G 88 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNV-EG 88 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEE-TT
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeEEe-CC
Confidence 5789999999989999999999999966654 44
No 243
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=50.88 E-value=13 Score=38.56 Aligned_cols=37 Identities=11% Similarity=-0.002 Sum_probs=24.1
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS 264 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P 264 (573)
|.=+++.+++| +||| +|++-+...+... +..++|++-
T Consensus 197 G~liiIaG~pG-~GKT-tlal~ia~~~a~~---------g~~vl~fSl 233 (444)
T 3bgw_A 197 RNFVLIAARPS-MGKT-AFALKQAKNMSDN---------DDVVNLHSL 233 (444)
T ss_dssp SCEEEEEECSS-SSHH-HHHHHHHHHHHHT---------TCEEEEECS
T ss_pred CcEEEEEeCCC-CChH-HHHHHHHHHHHHc---------CCEEEEEEC
Confidence 34567778999 9999 4555555554432 346777763
No 244
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=50.74 E-value=15 Score=29.08 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=28.0
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCCeeeecCC
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC 466 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~ 466 (573)
..+++|||.+-..+...+..|...|+++..+ .|
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l-~G 88 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNV-EG 88 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEE-TT
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEe-cc
Confidence 5799999999999999999999999966554 44
No 245
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=50.60 E-value=25 Score=41.03 Aligned_cols=74 Identities=8% Similarity=-0.052 Sum_probs=50.3
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcC------------------------------------CcEEEEeCCCCCHHHHH
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAF------------------------------------GIHTVSLHPGAAIDHQI 299 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~------------------------------------~i~~~~~~gg~~~~~~~ 299 (573)
+..+||.|+++.-|.++...+..+... ...++.++||.....+.
T Consensus 441 ~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~ 520 (1108)
T 3l9o_A 441 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 520 (1108)
T ss_dssp CCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHH
T ss_pred CCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHH
Confidence 457999999999999888877653110 01178899999866543
Q ss_pred ---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEE
Q 008235 300 ---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (573)
Q Consensus 300 ---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lV 335 (573)
..+..+..+|||||. +-...+++..+.+||
T Consensus 521 ~v~~~F~~G~ikVLVAT~------vla~GIDiP~v~~VI 553 (1108)
T 3l9o_A 521 VIEILFQEGFLKVLFATE------TFSIGLNMPAKTVVF 553 (1108)
T ss_dssp HHHHHHHHTCCCEEEEES------CCCSCCCC--CEEEE
T ss_pred HHHHHHhCCCCeEEEECc------HHhcCCCCCCceEEE
Confidence 344556799999994 123447888888855
No 246
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=50.03 E-value=12 Score=38.42 Aligned_cols=25 Identities=0% Similarity=-0.100 Sum_probs=19.7
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|+.+. .+|| ||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTG-SGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTG-SGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTT-SSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCC-CCCceEe
Confidence 56677899886555 5999 9999875
No 247
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=49.79 E-value=1.7e+02 Score=32.78 Aligned_cols=24 Identities=0% Similarity=-0.175 Sum_probs=17.5
Q ss_pred HHHHHhcC--CcEEEEeCCCchhHHHH
Q 008235 210 FWKCYSSA--KDILETSGSSSTIVQIA 234 (573)
Q Consensus 210 aip~il~g--~dvl~~A~TG~SGKTla 234 (573)
.+..+..+ .+++++.|+| +|||..
T Consensus 182 l~~~l~~~~~~~vlL~G~pG-~GKT~l 207 (854)
T 1qvr_A 182 VIQILLRRTKNNPVLIGEPG-VGKTAI 207 (854)
T ss_dssp HHHHHHCSSCCCCEEEECTT-SCHHHH
T ss_pred HHHHHhcCCCCceEEEcCCC-CCHHHH
Confidence 33444443 5799999999 999964
No 248
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=49.45 E-value=21 Score=27.08 Aligned_cols=32 Identities=13% Similarity=0.039 Sum_probs=27.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCCeeeec
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSISTGS 464 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~ 464 (573)
..+++|||.+-..+...+..|...|+......
T Consensus 41 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l 72 (85)
T 2jtq_A 41 NDTVKVYCNAGRQSGQAKEILSEMGYTHVENA 72 (85)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE
T ss_pred CCcEEEEcCCCchHHHHHHHHHHcCCCCEEec
Confidence 57899999998899999999999999754434
No 249
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=49.24 E-value=13 Score=37.56 Aligned_cols=42 Identities=5% Similarity=-0.021 Sum_probs=29.0
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHH
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreL 268 (573)
.+.+++++++|| ||||...-. ++..+.. .+..++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G-~GKs~~~~~-~~~~~~~---------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPG-AGKSFTAKM-LLLREYM---------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTT-SSHHHHHHH-HHHHHHT---------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCC-CCHHHHHHH-HHHHHHH---------CCCEEEEEeCCcCH
Confidence 457899999999 999965333 3333322 36678888887664
No 250
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=48.83 E-value=23 Score=28.30 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=28.2
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~ 467 (573)
..+++|||.+-..+...+..|...|+.-+..+.|.
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG 86 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGG 86 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCC
Confidence 56899999999999999999999999633334553
No 251
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=48.67 E-value=22 Score=40.66 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=39.8
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcC---------CcEEEEeCCCCCHHHHH---HHhhc-CCCcEEEeCHHHHHHHH
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAF---------GIHTVSLHPGAAIDHQI---TGLRS-CEPEFLVSTPERLLKLV 321 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~---------~i~~~~~~gg~~~~~~~---~~l~~-~~~~IlV~TP~rL~~~l 321 (573)
.+.++||.++|+..+..+.+.+.....+ |.....++|+++..++. ..++. +.++|||+|- .+
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~~ 704 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VA 704 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----C-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----ch
Confidence 4678999999999999999998875211 33344445666654433 44555 6789999993 22
Q ss_pred HcCCCCCCCccEEEEeCc
Q 008235 322 SLKAIDVSGVSLLVVDRL 339 (573)
Q Consensus 322 ~~~~~~l~~l~~lViDEa 339 (573)
...+++..+++||.=..
T Consensus 705 -~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 705 -DEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp ------CCCCSEEEEESC
T ss_pred -hcCCcchhCCEEEEeCC
Confidence 23478888999887443
No 252
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=48.02 E-value=50 Score=36.97 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=24.1
Q ss_pred cEEEEeCcccccC-------------cchHHHHHHhc---CCCCcEEEEeccCCcc
Q 008235 332 SLLVVDRLDSLSK-------------GDTLSLIRQSI---SGKPHTVVFNDCLTYT 371 (573)
Q Consensus 332 ~~lViDEad~ll~-------------~~~l~~Il~~l---~~~~q~l~~SAT~~~~ 371 (573)
..|+|||+|.++. ...+..++..+ .....++++.||-.++
T Consensus 572 ~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~ 627 (806)
T 3cf2_A 572 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627 (806)
T ss_dssp EEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSS
T ss_pred ceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCch
Confidence 5888999999875 11233344333 4556788888885544
No 253
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=47.78 E-value=1.4e+02 Score=30.58 Aligned_cols=17 Identities=6% Similarity=-0.167 Sum_probs=12.8
Q ss_pred CcEEEEeCCCchhHHHHH
Q 008235 218 KDILETSGSSSTIVQIAW 235 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (573)
+-+++++++| +|||...
T Consensus 101 ~vI~ivG~~G-vGKTT~a 117 (433)
T 2xxa_A 101 AVVLMAGLQG-AGKTTSV 117 (433)
T ss_dssp EEEEEECSTT-SSHHHHH
T ss_pred eEEEEECCCC-CCHHHHH
Confidence 4566678888 9999654
No 254
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=47.49 E-value=22 Score=35.18 Aligned_cols=90 Identities=13% Similarity=0.232 Sum_probs=48.5
Q ss_pred cEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH
Q 008235 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ 298 (573)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~ 298 (573)
-+++..|.| +|||.. ++.++...... ..+..++++..-..+. |. .++.+ |+..
T Consensus 30 iteI~G~pG-sGKTtL-~Lq~~~~~~~~-------g~g~~vlyId~E~s~~-~~--ra~~l---Gvd~------------ 82 (333)
T 3io5_A 30 LLILAGPSK-SFKSNF-GLTMVSSYMRQ-------YPDAVCLFYDSEFGIT-PA--YLRSM---GVDP------------ 82 (333)
T ss_dssp EEEEEESSS-SSHHHH-HHHHHHHHHHH-------CTTCEEEEEESSCCCC-HH--HHHHT---TCCG------------
T ss_pred eEEEECCCC-CCHHHH-HHHHHHHHHhc-------CCCceEEEEeccchhh-HH--HHHHh---CCCH------------
Confidence 467788999 999954 45555444432 0255788887644342 22 23333 3210
Q ss_pred HHHhhcCCCcEEEeCHH---HH-HHHHHc-CCCCCCCccEEEEeCccccc
Q 008235 299 ITGLRSCEPEFLVSTPE---RL-LKLVSL-KAIDVSGVSLLVVDRLDSLS 343 (573)
Q Consensus 299 ~~~l~~~~~~IlV~TP~---rL-~~~l~~-~~~~l~~l~~lViDEad~ll 343 (573)
-++++..|. .+ ++++.. ..+.-..+++||||=+-.|.
T Consensus 83 --------d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 --------ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --------GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred --------HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 124444333 33 222211 11233468999999998886
No 255
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=47.11 E-value=13 Score=36.78 Aligned_cols=25 Identities=8% Similarity=-0.249 Sum_probs=18.5
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTG-SGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTS-SGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTT-SSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCC-CCCceEe
Confidence 34566789875444 5999 9999874
No 256
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=46.92 E-value=14 Score=43.41 Aligned_cols=59 Identities=5% Similarity=-0.112 Sum_probs=42.5
Q ss_pred EEEEcCChhHHHHHHHHHHHHHhccCCCCCCCcEEEEecChh-hHHHHHHHHHHCCCCeee
Q 008235 403 SVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDS-KFQNLVSTLKCKGYSIST 462 (573)
Q Consensus 403 ~~~~~~~~~~k~~~l~~~L~~~~~~~~~~~~~k~lIF~~s~~-~~~~l~~~L~~~g~~~~~ 462 (573)
.+..+.+...-...+...|..+....+ ....-+.|.|.+.. .+..+...|...|+++..
T Consensus 313 ~i~~~~~~~~Ea~~ia~~I~~l~~~~g-~~~~diAVL~R~~~~~~~~i~~~L~~~gIP~~~ 372 (1166)
T 3u4q_B 313 TVMQAANRRAELEGIAREIHALVREKG-YRYKDVAILARQPEDYKDMVKEVFADYEIPYFI 372 (1166)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHTSC-CCGGGEEEEESCGGGTHHHHHHHHHHTTCCEEE
T ss_pred EEEEcCChHHHHHHHHHHHHHHHHhcC-CChhheEEEeCChHHHHHHHHHHHHHcCCCEEE
Confidence 344555566667777777777765222 12456889999974 788999999999999874
No 257
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=46.73 E-value=13 Score=37.29 Aligned_cols=25 Identities=0% Similarity=-0.296 Sum_probs=19.0
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTG-SGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTG-AGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTT-SSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCC-CCCceEe
Confidence 45667889886555 5999 9999774
No 258
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=46.21 E-value=13 Score=37.27 Aligned_cols=25 Identities=4% Similarity=-0.173 Sum_probs=18.5
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTG-SGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTG-TGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTT-SSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCC-CCCCeEE
Confidence 34566789876554 5999 9999874
No 259
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=46.09 E-value=80 Score=29.33 Aligned_cols=92 Identities=9% Similarity=0.033 Sum_probs=52.3
Q ss_pred hhHHHH-HHHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC----CCCeeeecCCC-HHHHHHHHHhcCCCCC
Q 008235 410 DEEKIL-KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK----GYSISTGSNCI-VSHIKNSVEADGRKRP 483 (573)
Q Consensus 410 ~~~k~~-~l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~----g~~~~~~~~~~-~~~~l~~F~~~g~~~~ 483 (573)
...|-. .+..++..+..... ..++||.++++.-+..++..+... ++.+..+..|. .......+ .....+
T Consensus 90 GsGKT~~~~~~il~~l~~~~~---~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~I 164 (249)
T 3ber_A 90 GSGKTGAFALPILNALLETPQ---RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL--AKKPHI 164 (249)
T ss_dssp TSCHHHHHHHHHHHHHHHSCC---SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH--HTCCSE
T ss_pred CCCchhHhHHHHHHHHhcCCC---CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh--cCCCCE
Confidence 344543 34455555554433 568999999999999888877654 67776543332 22223333 234455
Q ss_pred eEEEE----ecc-ccCCCccCCCCEEEe
Q 008235 484 AVSMI----DKD-HISTAELEEYEVVIV 506 (573)
Q Consensus 484 l~~lv----d~~-s~rGlDip~v~~VI~ 506 (573)
++++. +.. ...++++.++++||.
T Consensus 165 ~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 165 IIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp EEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred EEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 54411 111 113577888887774
No 260
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=46.06 E-value=12 Score=37.61 Aligned_cols=25 Identities=0% Similarity=-0.126 Sum_probs=19.5
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|+.+. .+|| ||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTG-SGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTG-SGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTT-SSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCC-CCCceEe
Confidence 56667899886555 5999 9999875
No 261
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=46.04 E-value=1.9e+02 Score=27.76 Aligned_cols=17 Identities=12% Similarity=-0.205 Sum_probs=12.5
Q ss_pred CcEEEEeCCCchhHHHHH
Q 008235 218 KDILETSGSSSTIVQIAW 235 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (573)
+-++++.++| +|||...
T Consensus 99 ~vi~i~G~~G-~GKTT~~ 115 (297)
T 1j8m_F 99 YVIMLVGVQG-TGKTTTA 115 (297)
T ss_dssp EEEEEECSSC-SSTTHHH
T ss_pred eEEEEECCCC-CCHHHHH
Confidence 3456678999 9999654
No 262
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=45.93 E-value=14 Score=36.66 Aligned_cols=26 Identities=0% Similarity=-0.144 Sum_probs=19.7
Q ss_pred HHHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 209 EFWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 209 ~aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
..+..++.|.|..+. .+|| ||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTG-SGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTG-AGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTT-SSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCC-CCCcEEE
Confidence 356677899886554 5999 9999774
No 263
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=45.92 E-value=14 Score=37.04 Aligned_cols=25 Identities=0% Similarity=-0.202 Sum_probs=18.9
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTG-SGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTG-SGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTT-SSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCC-CCCceEE
Confidence 45567789886554 5999 9999874
No 264
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=45.88 E-value=13 Score=37.09 Aligned_cols=25 Identities=0% Similarity=-0.075 Sum_probs=18.7
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTG-SGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTG-SGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTT-SSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccC-CCceEee
Confidence 34567789886555 5999 9999874
No 265
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=45.87 E-value=1.1e+02 Score=30.32 Aligned_cols=16 Identities=13% Similarity=-0.203 Sum_probs=12.2
Q ss_pred cEEEEeCCCchhHHHHH
Q 008235 219 DILETSGSSSTIVQIAW 235 (573)
Q Consensus 219 dvl~~A~TG~SGKTlaf 235 (573)
-++++.+.| +|||..+
T Consensus 81 ~I~i~G~~G-~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPG-VGKSTAI 96 (355)
T ss_dssp EEEEECCTT-SSHHHHH
T ss_pred EEEEECCCC-CCHHHHH
Confidence 466678899 9999653
No 266
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=45.83 E-value=13 Score=38.30 Aligned_cols=25 Identities=4% Similarity=-0.108 Sum_probs=19.9
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|+.+. .+|| ||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTG-SGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTG-SGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTT-SSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCC-CCCeeEe
Confidence 56778899886555 5999 9999874
No 267
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=45.75 E-value=14 Score=36.29 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=19.8
Q ss_pred HHHHHHhcCCcEEEEeCCCchhHHHH
Q 008235 209 EFWKCYSSAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 209 ~aip~il~g~dvl~~A~TG~SGKTla 234 (573)
...-.+..|.++++..|+| +|||..
T Consensus 38 ~l~~~l~~~~~vll~G~pG-tGKT~l 62 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPG-LAKTLS 62 (331)
T ss_dssp HHHHHHHHTCCEEEESCCC-HHHHHH
T ss_pred HHHHHHHcCCeEEEECCCC-CcHHHH
Confidence 3444556689999999999 999964
No 268
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=45.74 E-value=91 Score=34.79 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhh---cC
Q 008235 229 TIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLR---SC 305 (573)
Q Consensus 229 SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~---~~ 305 (573)
|||.. .+.-++..+.. .+-++||.+..+..+..+...+... |+.+..+.|+++.......+. .+
T Consensus 555 s~K~~-~L~~lL~~~~~---------~g~kvLIFsq~~~~ld~L~~~L~~~---g~~~~~i~G~~~~~eR~~~i~~F~~~ 621 (800)
T 3mwy_W 555 SGKMV-LLDQLLTRLKK---------DGHRVLIFSQMVRMLDILGDYLSIK---GINFQRLDGTVPSAQRRISIDHFNSP 621 (800)
T ss_dssp CHHHH-HHHHHHHHHTT---------TTCCEEEEESCHHHHHHHHHHHHHH---TCCCEEESTTSCHHHHHHHHHTTSST
T ss_pred ChHHH-HHHHHHHHHhh---------CCCeEEEEechHHHHHHHHHHHHhC---CCCEEEEeCCCCHHHHHHHHHHhhCC
Confidence 67743 34444544432 3668999999999888887777654 888899999998766554443 32
Q ss_pred CCc---EEEeCHHHHHHHHHcCCCCCCCccEEEEeCc
Q 008235 306 EPE---FLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (573)
Q Consensus 306 ~~~---IlV~TP~rL~~~l~~~~~~l~~l~~lViDEa 339 (573)
... +|++| .. -.-.++|.....||+=+.
T Consensus 622 ~~~~~v~LlSt-~a-----gg~GlNL~~a~~VI~~D~ 652 (800)
T 3mwy_W 622 DSNDFVFLLST-RA-----GGLGINLMTADTVVIFDS 652 (800)
T ss_dssp TCSCCCEEEEH-HH-----HTTTCCCTTCCEEEESSC
T ss_pred CCCceEEEEec-cc-----ccCCCCccccceEEEecC
Confidence 222 55555 21 233577888888776443
No 269
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=45.60 E-value=14 Score=37.20 Aligned_cols=25 Identities=4% Similarity=-0.278 Sum_probs=18.4
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTG-SGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTS-SGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTT-SSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCC-CCCceEE
Confidence 34556789876554 5999 9999874
No 270
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=45.17 E-value=15 Score=37.21 Aligned_cols=25 Identities=4% Similarity=-0.234 Sum_probs=18.4
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTG-SGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTG-TGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTT-SSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCC-CCCCEeE
Confidence 34567789876555 5999 9999774
No 271
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=45.14 E-value=14 Score=37.79 Aligned_cols=25 Identities=0% Similarity=-0.214 Sum_probs=18.3
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTG-SGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTG-SGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTT-SSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCC-CCCCeEe
Confidence 34567789775444 5999 9999874
No 272
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=44.95 E-value=22 Score=27.63 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=26.9
Q ss_pred CcEEEEecChhhHHHHHHHHHHCCCCeeeecCC
Q 008235 434 LKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC 466 (573)
Q Consensus 434 ~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~ 466 (573)
.+++|||.+-..+...+..|...|+.+.. +.|
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~-l~G 85 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMS-LEG 85 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEE-ETT
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEE-Ecc
Confidence 68999999998999999999999999443 444
No 273
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=44.84 E-value=14 Score=37.15 Aligned_cols=25 Identities=4% Similarity=-0.197 Sum_probs=18.4
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTG-SGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTG-TGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTT-SSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCC-CCCceEE
Confidence 34566789876554 5999 9999764
No 274
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=44.81 E-value=13 Score=37.63 Aligned_cols=25 Identities=0% Similarity=-0.104 Sum_probs=19.4
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTG-SGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTG-SGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTT-SSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCC-CCCeEee
Confidence 56677899886555 5999 9999774
No 275
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=44.73 E-value=15 Score=36.90 Aligned_cols=25 Identities=0% Similarity=-0.043 Sum_probs=18.6
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTG-SGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATG-AGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTT-SSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCC-CCceeee
Confidence 34567789886555 5999 9999874
No 276
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=44.66 E-value=25 Score=41.38 Aligned_cols=61 Identities=11% Similarity=-0.003 Sum_probs=40.6
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhc--cCCCCCCcEEEEEcccHHHHHHHHHHHhh
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEK--EGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~--~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 278 (573)
.|.. +|.|.-| ||||.+..-=++..+...... .........+|+|+=|+.=|..+.+.+..
T Consensus 16 ~g~~-lV~AsAG-SGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 16 QGER-LIEASAG-TGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp SSCE-EEECCTT-SCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCCE-EEEECCC-CCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4544 8999999 999988665556555432100 00001345799999999998888877765
No 277
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=44.62 E-value=15 Score=36.76 Aligned_cols=25 Identities=0% Similarity=-0.235 Sum_probs=18.6
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTG-SGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTA-SGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTT-SSHHHHH
T ss_pred HHHHHHcCCccceeeecCCC-CCCCeEE
Confidence 34567789776554 5999 9999874
No 278
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=44.54 E-value=15 Score=36.75 Aligned_cols=24 Identities=0% Similarity=-0.259 Sum_probs=18.0
Q ss_pred HHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 211 WKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 211 ip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
+..++.|.|..+. .+|| ||||...
T Consensus 82 v~~~l~G~n~tifAYGqTG-SGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTG-AGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTT-SSHHHHH
T ss_pred HHHHhCCCceeEEeecCCC-CCCCEEe
Confidence 4556789876555 5999 9999874
No 279
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=44.11 E-value=12 Score=37.37 Aligned_cols=25 Identities=0% Similarity=-0.104 Sum_probs=18.8
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTG-SGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTG-SGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTT-SSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCC-CCCcEec
Confidence 45567789886555 5999 9999874
No 280
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=43.92 E-value=16 Score=36.92 Aligned_cols=25 Identities=0% Similarity=-0.152 Sum_probs=18.4
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTG-SGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTG-AGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTT-SSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCC-CCCceEe
Confidence 34566789876555 5999 9999764
No 281
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=43.88 E-value=16 Score=36.79 Aligned_cols=24 Identities=0% Similarity=-0.298 Sum_probs=18.0
Q ss_pred HHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 211 WKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 211 ip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
+..++.|.|..+. .+|| ||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTG-SGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTG-AGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTT-SSHHHHH
T ss_pred HHHHhCCCcceEEEECCCC-CCcceEe
Confidence 4556789876554 5999 9999774
No 282
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=43.87 E-value=60 Score=37.40 Aligned_cols=78 Identities=8% Similarity=0.033 Sum_probs=52.3
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhc------------------------------------CCcEEEEeCCCCCHHHHH
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKA------------------------------------FGIHTVSLHPGAAIDHQI 299 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~------------------------------------~~i~~~~~~gg~~~~~~~ 299 (573)
...+||.++|+.-|.++...+..+.. +...+..++||.....+.
T Consensus 336 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~ 415 (997)
T 4a4z_A 336 LLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKE 415 (997)
T ss_dssp CCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHH
Confidence 45699999999998888777654311 012468889999865543
Q ss_pred ---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCcc
Q 008235 300 ---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (573)
Q Consensus 300 ---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEad 340 (573)
..+..+..+|||||- .+.. .+++.. ..+|+....
T Consensus 416 ~v~~~F~~G~~kVLvAT~-----~~a~-GIDiP~-~~VVi~~~~ 452 (997)
T 4a4z_A 416 LIEILFSKGFIKVLFATE-----TFAM-GLNLPT-RTVIFSSIR 452 (997)
T ss_dssp HHHHHHHTTCCSEEEECT-----HHHH-SCCCCC-SEEEESCSE
T ss_pred HHHHHHHCCCCcEEEEch-----HhhC-CCCCCC-ceEEEeccc
Confidence 344566799999994 3443 467777 666664443
No 283
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=43.85 E-value=16 Score=34.61 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=15.7
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.+..+++..|+| +|||..
T Consensus 28 ~~~~vll~G~~G-tGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERG-TGKELI 45 (265)
T ss_dssp SCSCEEEECCTT-SCHHHH
T ss_pred CCCCEEEECCCC-CcHHHH
Confidence 458899999999 999964
No 284
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=43.67 E-value=18 Score=32.95 Aligned_cols=18 Identities=22% Similarity=-0.112 Sum_probs=14.4
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.|.-+++.+|+| +|||..
T Consensus 22 ~G~~~~i~G~~G-sGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPG-TGKTIF 39 (235)
T ss_dssp TTCEEEEECSTT-SSHHHH
T ss_pred CCCEEEEEcCCC-CCHHHH
Confidence 356678889999 999954
No 285
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=43.50 E-value=18 Score=36.52 Aligned_cols=38 Identities=13% Similarity=-0.030 Sum_probs=25.1
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS 264 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P 264 (573)
.|.-+++.++.| +|||. |++.++..+... +..++|+..
T Consensus 73 ~G~li~I~G~pG-sGKTt-lal~la~~~~~~---------g~~vlyi~~ 110 (366)
T 1xp8_A 73 RGRITEIYGPES-GGKTT-LALAIVAQAQKA---------GGTCAFIDA 110 (366)
T ss_dssp TTSEEEEEESTT-SSHHH-HHHHHHHHHHHT---------TCCEEEEES
T ss_pred CCcEEEEEcCCC-CChHH-HHHHHHHHHHHC---------CCeEEEEEC
Confidence 346678889999 99994 556666555432 345666664
No 286
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=43.41 E-value=99 Score=29.12 Aligned_cols=83 Identities=8% Similarity=0.090 Sum_probs=53.2
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
|.||-+|+...+++-|+-.|-. +.. .|..++++.-+.+-+.++.+.++.. |.++..+.....
T Consensus 5 L~gKvalVTGas~GIG~aiA~~------la~---------~Ga~Vv~~~~~~~~~~~~~~~i~~~---g~~~~~~~~Dvt 66 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKK------FAL---------NDSIVVAVELLEDRLNQIVQELRGM---GKEVLGVKADVS 66 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHH------HHH---------cCCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEEccCC
Confidence 5788888875444377755432 222 3777887777777777777777655 556666666666
Q ss_pred HHHHHHHhh------cCCCcEEEeCHH
Q 008235 295 IDHQITGLR------SCEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~------~~~~~IlV~TP~ 315 (573)
..++...+- -++.||||-..|
T Consensus 67 ~~~~v~~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 67 KKKDVEEFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 555544332 147899998765
No 287
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=42.86 E-value=15 Score=37.15 Aligned_cols=25 Identities=4% Similarity=-0.194 Sum_probs=18.3
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||.+.
T Consensus 92 lv~~~l~G~n~tifAYGqTG-SGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTG-TGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTT-SSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCC-CCcceec
Confidence 34556789876555 5999 9999763
No 288
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=42.70 E-value=36 Score=38.11 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=14.6
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+.+|+..|.| +|||+.
T Consensus 239 ~GILL~GPPG-TGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPG-TGKTLI 254 (806)
T ss_dssp CEEEEECCTT-SCHHHH
T ss_pred CeEEEECCCC-CCHHHH
Confidence 7899999999 999975
No 289
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=42.53 E-value=14 Score=37.48 Aligned_cols=23 Identities=0% Similarity=-0.140 Sum_probs=17.6
Q ss_pred HHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 212 KCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 212 p~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
..++.|.|..+. .+|| ||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTG-SGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTG-AGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTT-SSHHHHH
T ss_pred HHhhcCceeeEeeecCCC-CCCCeEe
Confidence 456789886555 5999 9999774
No 290
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=42.49 E-value=14 Score=45.03 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=56.2
Q ss_pred HHHHHHhc------CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcC
Q 008235 209 EFWKCYSS------AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF 282 (573)
Q Consensus 209 ~aip~il~------g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~ 282 (573)
..+-.++- |+-+.+..|.| ||||.. +++++..... .|-.++++.+-.+|.... ++.+
T Consensus 1417 ~~lD~~lg~gG~prg~~iei~g~~~-sGkttl-~~~~~a~~~~---------~g~~~~~i~~e~~~~~~~---~~~~--- 1479 (1706)
T 3cmw_A 1417 LSLDIALGAGGLPMGRIVEIYGPES-SGKTTL-TLQVIAAAQR---------EGKTCAFIDAEHALDPIY---ARKL--- 1479 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTT-SSHHHH-HHHHHHHHHH---------TTCCEEEECTTSCCCHHH---HHHT---
T ss_pred HHHHHhcCCCCCCCCCEEEEEcCCC-CCHHHH-HHHHHHHHHh---------cCCeEEEEecCCCCCHHH---HHHc---
Confidence 44555555 36688889999 999965 4556644433 366788888755554433 3333
Q ss_pred CcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHc--CCCCCCCccEEEEeCcccccC
Q 008235 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL--KAIDVSGVSLLVVDRLDSLSK 344 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~--~~~~l~~l~~lViDEad~ll~ 344 (573)
|+.. -+++|.-|..--++|.- ..+.-..++.||||.+..|..
T Consensus 1480 Gv~~--------------------~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1480 GVDI--------------------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp TCCG--------------------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred CCCH--------------------HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 3321 12555555332111110 001123477999999988766
No 291
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=42.30 E-value=1.2e+02 Score=32.78 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=59.0
Q ss_pred CCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHh
Q 008235 226 SSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGL 302 (573)
Q Consensus 226 TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l 302 (573)
.. |||-.. +.-++..+... .+.++||.+.++..+..+...+... |+.+..++|+++..... ..+
T Consensus 396 ~~-s~K~~~-l~~ll~~~~~~--------~~~k~lIFs~~~~~~~~l~~~l~~~---g~~~~~l~G~~~~~~R~~~i~~F 462 (644)
T 1z3i_X 396 QL-SGKMLV-LDYILAMTRTT--------TSDKVVLVSNYTQTLDLFEKLCRNR---RYLYVRLDGTMSIKKRAKIVERF 462 (644)
T ss_dssp GG-SHHHHH-HHHHHHHHHHH--------CCCEEEEEESCHHHHHHHHHHHHHH---TCCEEEECSSCCHHHHHHHHHHH
T ss_pred cc-ChHHHH-HHHHHHHHhhc--------CCCEEEEEEccHHHHHHHHHHHHHC---CCCEEEEeCCCCHHHHHHHHHHh
Confidence 45 788543 33344433322 3668999999999888887776654 88899999998865443 344
Q ss_pred hcCCC---cEEEeCHHHHHHHHHcCCCCCCCccEEEEeCc
Q 008235 303 RSCEP---EFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (573)
Q Consensus 303 ~~~~~---~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEa 339 (573)
+.+.. -+|++|- .-.-.+++..+..||+=+.
T Consensus 463 ~~~~~~~~v~L~st~------a~g~Glnl~~a~~Vi~~d~ 496 (644)
T 1z3i_X 463 NNPSSPEFIFMLSSK------AGGCGLNLIGANRLVMFDP 496 (644)
T ss_dssp HSTTCCCCEEEEEGG------GSCTTCCCTTEEEEEECSC
T ss_pred cCCCCCcEEEEEecc------cccCCcccccCCEEEEECC
Confidence 44222 2566662 1123467777777765443
No 292
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=42.08 E-value=18 Score=38.30 Aligned_cols=21 Identities=0% Similarity=-0.089 Sum_probs=17.5
Q ss_pred HHhcCCcEEEEeCCCchhHHHH
Q 008235 213 CYSSAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 213 ~il~g~dvl~~A~TG~SGKTla 234 (573)
.+..|..++++.||| ||||..
T Consensus 256 ~v~~g~~i~I~GptG-SGKTTl 276 (511)
T 2oap_1 256 AIEHKFSAIVVGETA-SGKTTT 276 (511)
T ss_dssp HHHTTCCEEEEESTT-SSHHHH
T ss_pred HHhCCCEEEEECCCC-CCHHHH
Confidence 345688899999999 999964
No 293
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=41.98 E-value=26 Score=36.97 Aligned_cols=29 Identities=3% Similarity=-0.190 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCchhHHHH
Q 008235 205 SWGIEFWKCYSSAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 205 ~iQ~~aip~il~g~dvl~~A~TG~SGKTla 234 (573)
.+=..+.-.+..|.++++..|+| +|||..
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPG-tGKT~L 57 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPG-IAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSS-SSHHHH
T ss_pred HHHHHHHHHHhcCCeeEeecCch-HHHHHH
Confidence 34445566677889999999999 999964
No 294
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=41.74 E-value=11 Score=34.54 Aligned_cols=18 Identities=17% Similarity=-0.025 Sum_probs=14.5
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.|+-+++..||| +|||..
T Consensus 33 ~g~~ilI~GpsG-sGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSG-VGKSET 50 (205)
T ss_dssp TTEEEEEECCCT-TTTHHH
T ss_pred CCEEEEEECCCC-CCHHHH
Confidence 356789999999 999843
No 295
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=41.73 E-value=22 Score=34.23 Aligned_cols=18 Identities=28% Similarity=0.159 Sum_probs=14.2
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.|.=+++.+|+| +|||..
T Consensus 34 ~G~~~~i~G~~G-~GKTTl 51 (296)
T 1cr0_A 34 GGEVIMVTSGSG-MGKSTF 51 (296)
T ss_dssp TTCEEEEEESTT-SSHHHH
T ss_pred CCeEEEEEeCCC-CCHHHH
Confidence 456677889999 999954
No 296
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=41.50 E-value=17 Score=36.91 Aligned_cols=25 Identities=0% Similarity=-0.214 Sum_probs=18.6
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTG-SGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTG-SGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTT-SSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCC-CCCCeEe
Confidence 34567789775554 5999 9999874
No 297
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=41.37 E-value=1.2e+02 Score=23.66 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=40.4
Q ss_pred HHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCCHHHHHHHHH
Q 008235 421 LDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKNSVE 476 (573)
Q Consensus 421 L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~l~~F~ 476 (573)
+..+..... ..++||..|...-..++.+++...|+.+..+....-..-++.|.
T Consensus 42 mkklaeekn---fekiliisndkqllkemlelisklgykvflllqdqdeneleefk 94 (134)
T 2lci_A 42 MKKLAEEKN---FEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFK 94 (134)
T ss_dssp HHHHHHCCS---CCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHH
T ss_pred HHHHHhhcC---cceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHH
Confidence 344444433 68999999999999999999999999998766555555677773
No 298
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=41.36 E-value=46 Score=27.27 Aligned_cols=35 Identities=9% Similarity=0.036 Sum_probs=27.9
Q ss_pred CcEEEEe-cChhhHHHHHHHHHHCCCCeeeecCCCHH
Q 008235 434 LKVLYIV-GKDSKFQNLVSTLKCKGYSISTGSNCIVS 469 (573)
Q Consensus 434 ~k~lIF~-~s~~~~~~l~~~L~~~g~~~~~~~~~~~~ 469 (573)
.+++||| .+-..+..++..|...|+++.. +.|...
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~-l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQ-LEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEE-ETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEE-EeCcHH
Confidence 6899999 5778888999999999997665 455444
No 299
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=40.92 E-value=25 Score=35.25 Aligned_cols=18 Identities=11% Similarity=-0.023 Sum_probs=14.2
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.|.-++++.||| ||||..
T Consensus 122 ~~g~i~I~GptG-SGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTG-SGKSTT 139 (356)
T ss_dssp SSEEEEEECSTT-SCHHHH
T ss_pred CCCEEEEECCCC-CCHHHH
Confidence 345678889999 999964
No 300
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=40.83 E-value=25 Score=28.07 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=28.4
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCC-eeeecCCCH
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS-ISTGSNCIV 468 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~-~~~~~~~~~ 468 (573)
..+++|||.+-..+...+..|...|+. +.. +.|..
T Consensus 58 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~-l~GG~ 93 (108)
T 1gmx_A 58 DTPVMVMCYHGNSSKGAAQYLLQQGYDVVYS-IDGGF 93 (108)
T ss_dssp TSCEEEECSSSSHHHHHHHHHHHHTCSSEEE-ETTHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHcCCceEEE-ecCCH
Confidence 578999999988999999999999996 544 45543
No 301
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=40.46 E-value=12 Score=32.58 Aligned_cols=16 Identities=0% Similarity=-0.176 Sum_probs=14.3
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
..+++..|+| +|||..
T Consensus 44 ~~~ll~G~~G-~GKT~l 59 (195)
T 1jbk_A 44 NNPVLIGEPG-VGKTAI 59 (195)
T ss_dssp CEEEEECCTT-SCHHHH
T ss_pred CceEEECCCC-CCHHHH
Confidence 6799999999 999965
No 302
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=40.37 E-value=28 Score=35.78 Aligned_cols=17 Identities=18% Similarity=-0.015 Sum_probs=13.6
Q ss_pred CCcEEEEeCCCchhHHHH
Q 008235 217 AKDILETSGSSSTIVQIA 234 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (573)
|.-++++.||| ||||..
T Consensus 167 ggii~I~GpnG-SGKTTl 183 (418)
T 1p9r_A 167 HGIILVTGPTG-SGKSTT 183 (418)
T ss_dssp SEEEEEECSTT-SCHHHH
T ss_pred CCeEEEECCCC-CCHHHH
Confidence 44578889999 999964
No 303
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=39.92 E-value=1.5e+02 Score=28.66 Aligned_cols=19 Identities=5% Similarity=-0.135 Sum_probs=14.5
Q ss_pred cCCcEEEEeCCCchhHHHHH
Q 008235 216 SAKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf 235 (573)
.|.=+.++.|+| +|||...
T Consensus 99 ~g~vi~lvG~nG-sGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNG-GGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTT-SCHHHHH
T ss_pred CCcEEEEEcCCC-CCHHHHH
Confidence 355567789999 9999753
No 304
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=39.83 E-value=22 Score=37.31 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=23.8
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS 264 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P 264 (573)
|.=+++.+++| +|||. |++-++..+... .+..++|++-
T Consensus 242 G~l~li~G~pG-~GKT~-lal~~a~~~a~~--------~g~~vl~~s~ 279 (503)
T 1q57_A 242 GEVIMVTSGSG-MVMST-FVRQQALQWGTA--------MGKKVGLAML 279 (503)
T ss_dssp TCEEEEEESSC-HHHHH-HHHHHHHHHTTT--------SCCCEEEEES
T ss_pred CeEEEEeecCC-CCchH-HHHHHHHHHHHh--------cCCcEEEEec
Confidence 45577789999 99994 555555444322 1445677653
No 305
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=39.76 E-value=17 Score=36.84 Aligned_cols=25 Identities=0% Similarity=-0.146 Sum_probs=18.8
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. .+|| ||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTG-SGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTG-SGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTT-SSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCC-CCCceEe
Confidence 45567889886555 5999 9999774
No 306
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=39.52 E-value=15 Score=33.43 Aligned_cols=33 Identities=9% Similarity=0.190 Sum_probs=0.0
Q ss_pred EEEEeCcccccC--------cchHHHHHHhcCCCCcEEEEe
Q 008235 333 LLVVDRLDSLSK--------GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 333 ~lViDEad~ll~--------~~~l~~Il~~l~~~~q~l~~S 365 (573)
+|||||||.++. ...+..+-..-....++++++
T Consensus 90 vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~t 130 (199)
T 2r2a_A 90 IVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLT 130 (199)
T ss_dssp EEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEE
T ss_pred EEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEEC
No 307
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=39.51 E-value=31 Score=27.66 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=28.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~ 467 (573)
..+++|||.+-..+...+..|...|+.. ..+.|.
T Consensus 56 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~-~~l~GG 89 (110)
T 2k0z_A 56 DKKVLLHCRAGRRALDAAKSMHELGYTP-YYLEGN 89 (110)
T ss_dssp SSCEEEECSSSHHHHHHHHHHHHTTCCC-EEEESC
T ss_pred CCEEEEEeCCCchHHHHHHHHHHCCCCE-EEecCC
Confidence 5789999999999999999999999976 444443
No 308
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=39.50 E-value=22 Score=35.70 Aligned_cols=38 Identities=11% Similarity=-0.008 Sum_probs=24.4
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS 264 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P 264 (573)
.|+-+++.++.| +|||.. ++-++..+... +..++|+..
T Consensus 62 ~G~ii~I~G~pG-sGKTtL-al~la~~~~~~---------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPES-SGKTTL-TLQVIAAAQRE---------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTT-SSHHHH-HHHHHHHHHHT---------TCCEEEEES
T ss_pred CCeEEEEECCCC-CCHHHH-HHHHHHHHHHC---------CCeEEEEeC
Confidence 346678889999 999954 44444444322 445777765
No 309
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=39.02 E-value=20 Score=37.10 Aligned_cols=25 Identities=4% Similarity=-0.144 Sum_probs=18.4
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..++.|.|..+. ..|| ||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTG-SGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTG-SGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTT-SSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCC-CCCCEEe
Confidence 34556789876555 5999 9999874
No 310
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=38.58 E-value=39 Score=31.14 Aligned_cols=32 Identities=6% Similarity=-0.071 Sum_probs=20.9
Q ss_pred HHHHHHHhcC----CcEEEEeCCCchhHHHHHHHHHHH
Q 008235 208 IEFWKCYSSA----KDILETSGSSSTIVQIAWIVATAA 241 (573)
Q Consensus 208 ~~aip~il~g----~dvl~~A~TG~SGKTlaf~lp~l~ 241 (573)
..++..++.+ +.+++..|.| +|||..+ ..++.
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPG-tGKTt~a-~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPAN-TGKSYFG-MSFIH 80 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGG-GCHHHHH-HHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCC-CCHHHHH-HHHHH
Confidence 3445555555 3588889999 9999543 43443
No 311
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=38.43 E-value=62 Score=37.30 Aligned_cols=77 Identities=10% Similarity=-0.011 Sum_probs=52.0
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcC------------------------------------CcEEEEeCCCCCHHHHH
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAF------------------------------------GIHTVSLHPGAAIDHQI 299 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~------------------------------------~i~~~~~~gg~~~~~~~ 299 (573)
...+||.++|+.-|..+...+..+... ...++.++||.......
T Consensus 343 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~ 422 (1010)
T 2xgj_A 343 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 422 (1010)
T ss_dssp CCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHH
Confidence 447999999999998888777653110 11278899999865543
Q ss_pred ---HHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEEEEeCc
Q 008235 300 ---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (573)
Q Consensus 300 ---~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~lViDEa 339 (573)
..+.++...|||||. .+. ..+++..+.+ ||+..
T Consensus 423 ~ve~~F~~G~ikVLVAT~-----~la-~GIDiP~~~v-VI~~~ 458 (1010)
T 2xgj_A 423 VIEILFQEGFLKVLFATE-----TFS-IGLNMPAKTV-VFTSV 458 (1010)
T ss_dssp HHHHHHHTTCCSEEEEEG-----GGG-GSTTCCBSEE-EESCS
T ss_pred HHHHHHhcCCCcEEEEeh-----Hhh-ccCCCCCceE-EEeCC
Confidence 345566799999994 233 3467777766 55543
No 312
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=38.23 E-value=21 Score=29.43 Aligned_cols=34 Identities=6% Similarity=-0.100 Sum_probs=27.7
Q ss_pred CCcEEEEecChhh--HHHHHHHHHHCCCCeeeecCCC
Q 008235 433 PLKVLYIVGKDSK--FQNLVSTLKCKGYSISTGSNCI 467 (573)
Q Consensus 433 ~~k~lIF~~s~~~--~~~l~~~L~~~g~~~~~~~~~~ 467 (573)
..+++|||.+-.. +...+..|...|+.+..+ .|.
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l-~GG 106 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYEL-AGA 106 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEE-TTH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEe-CCc
Confidence 5789999999877 889999999999985544 553
No 313
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=38.08 E-value=37 Score=28.75 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=28.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~ 467 (573)
..+++|||.+-..+...+..|...|+.-+..+.|.
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG 90 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGG 90 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTH
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCH
Confidence 56899999999999999999999999633334553
No 314
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=38.04 E-value=18 Score=36.31 Aligned_cols=21 Identities=5% Similarity=-0.048 Sum_probs=17.6
Q ss_pred HHhcCCcEEEEeCCCchhHHHH
Q 008235 213 CYSSAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 213 ~il~g~dvl~~A~TG~SGKTla 234 (573)
.+..|..++++.||| ||||..
T Consensus 171 ~i~~G~~i~ivG~sG-sGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETG-SGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSS-SCHHHH
T ss_pred HHhcCCEEEEECCCC-CCHHHH
Confidence 345789999999999 999964
No 315
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=37.43 E-value=1.6e+02 Score=29.31 Aligned_cols=18 Identities=6% Similarity=-0.145 Sum_probs=14.0
Q ss_pred CCcEEEEeCCCchhHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (573)
|.=+.++.|+| +|||...
T Consensus 157 g~vi~lvG~nG-sGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNG-GGKTTSL 174 (359)
T ss_dssp SEEEEEECCTT-SCHHHHH
T ss_pred CeEEEEEcCCC-ChHHHHH
Confidence 45567789999 9999754
No 316
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=37.41 E-value=2.6e+02 Score=26.06 Aligned_cols=42 Identities=7% Similarity=-0.165 Sum_probs=29.8
Q ss_pred CcEEEEecChhhHHHHHHHHHHCCCC--eeeecCCCHHHHHHHH
Q 008235 434 LKVLYIVGKDSKFQNLVSTLKCKGYS--ISTGSNCIVSHIKNSV 475 (573)
Q Consensus 434 ~k~lIF~~s~~~~~~l~~~L~~~g~~--~~~~~~~~~~~~l~~F 475 (573)
....|||.+...|.-+...|...|+. +..+-.++....+..+
T Consensus 187 ~~~ai~~~~d~~a~g~~~al~~~g~~~di~vig~d~~~~~~~~~ 230 (305)
T 3g1w_A 187 NLAGIFATEANGGVGVGDAVRLESRAGEIQIISFDTDKGTLDLV 230 (305)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCHHHHHHH
T ss_pred CceEEEECCCcchhhHHHHHHhcCCCCCeEEEEeCCCHHHHHHH
Confidence 57899999999999999999999874 3222233444445555
No 317
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=37.32 E-value=2.8e+02 Score=26.49 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=23.1
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCCe
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~~ 460 (573)
..+.-|||.+...|--+...|...|+.+
T Consensus 241 ~~~~ai~~~nd~~A~g~~~al~~~G~~v 268 (338)
T 3dbi_A 241 AKFSALVASNDDMAIGAMKALHERGVAV 268 (338)
T ss_dssp CCCSEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred CCCeEEEECChHHHHHHHHHHHHcCCCC
Confidence 3578899999998988999998888753
No 318
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=37.30 E-value=69 Score=28.91 Aligned_cols=63 Identities=6% Similarity=0.034 Sum_probs=40.4
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCH-HHHHHHhhcCCCcEEEeCHHHHHHHHHc
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAI-DHQITGLRSCEPEFLVSTPERLLKLVSL 323 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~-~~~~~~l~~~~~~IlV~TP~rL~~~l~~ 323 (573)
....++++|..+|...+.+.+..+ +..+....|+... -...+.+ ..++||+|+--+. ..+|+.
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~---~~~i~i~~~~l~~~v~~a~~~-~~~~dVIISRGgt-a~~lr~ 67 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEK---NFIPITKTASLTRASKIAFGL-QDEVDAIISRGAT-SDYIKK 67 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHH---TCEEEEEECCHHHHHHHHHHH-TTTCSEEEEEHHH-HHHHHT
T ss_pred CCcEEEEEccHHHHHHHHHHHhhh---CCceEEEECCHHHHHHHHHHh-cCCCeEEEECChH-HHHHHH
Confidence 457999999999998777777765 3344445555432 1223344 4489999987544 455554
No 319
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=37.26 E-value=1.2e+02 Score=27.56 Aligned_cols=94 Identities=13% Similarity=0.032 Sum_probs=52.4
Q ss_pred EcCChhHHHHH-HHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC-----CCCeeeecCCCH--HHHHHHHHh
Q 008235 406 VCASDEEKILK-GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK-----GYSISTGSNCIV--SHIKNSVEA 477 (573)
Q Consensus 406 ~~~~~~~k~~~-l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~-----g~~~~~~~~~~~--~~~l~~F~~ 477 (573)
..+....|-.. +..++..+..... ..++||.|+++.-+..++..+... ++.+..+ +|+. .+..+.+
T Consensus 67 ~a~TGsGKT~~~~l~~l~~l~~~~~---~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~-- 140 (230)
T 2oxc_A 67 QAKSGTGKTCVFSTIALDSLVLENL---STQILILAPTREIAVQIHSVITAIGIKMEGLECHVF-IGGTPLSQDKTRL-- 140 (230)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCTTSC---SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEE-CTTSCHHHHHHHT--
T ss_pred ECCCCCcHHHHHHHHHHHHHHhcCC---CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEE-eCCCCHHHHHHhc--
Confidence 33334555543 4455555544333 579999999999999999888765 4556554 4432 2223333
Q ss_pred cCCCCCeEEEE----eccccCCCccCCCCEEEe
Q 008235 478 DGRKRPAVSMI----DKDHISTAELEEYEVVIV 506 (573)
Q Consensus 478 ~g~~~~l~~lv----d~~s~rGlDip~v~~VI~ 506 (573)
....++++.. +......+++.++++||.
T Consensus 141 -~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 141 -KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp -TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred -cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 2344444411 111112566777777764
No 320
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=36.71 E-value=33 Score=29.22 Aligned_cols=31 Identities=6% Similarity=0.065 Sum_probs=25.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCC-eeee
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS-ISTG 463 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~-~~~~ 463 (573)
..++||||.+-..+...+..|...|+. +..+
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l 111 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAGITPAYNV 111 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTTCCSEEEE
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCcceEEE
Confidence 578999999988889999999999995 5544
No 321
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=36.45 E-value=36 Score=28.64 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=28.5
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCC-eeeecCCCH
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS-ISTGSNCIV 468 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~-~~~~~~~~~ 468 (573)
..+++|||.+-..+...+..|...|+. +..+ .|..
T Consensus 82 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l-~GG~ 117 (137)
T 1qxn_A 82 EKPVVVFCKTAARAALAGKTLREYGFKTIYNS-EGGM 117 (137)
T ss_dssp TSCEEEECCSSSCHHHHHHHHHHHTCSCEEEE-SSCH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCcceEEE-cCcH
Confidence 679999999998999999999999995 5444 5543
No 322
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=36.19 E-value=16 Score=32.40 Aligned_cols=18 Identities=6% Similarity=-0.093 Sum_probs=15.0
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.|+=++++.|+| +|||..
T Consensus 4 ~g~~i~i~GpsG-sGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHG-VGRRHI 21 (180)
T ss_dssp CCCEEEEECCTT-SSHHHH
T ss_pred CCCEEEEECCCC-CCHHHH
Confidence 567788889999 999964
No 323
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=36.00 E-value=1.3e+02 Score=28.41 Aligned_cols=86 Identities=12% Similarity=0.006 Sum_probs=47.6
Q ss_pred HHHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCC
Q 008235 212 KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHP 291 (573)
Q Consensus 212 p~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~g 291 (573)
+.++.|+-+||...+|+-|+-++- .+.. .|..++++.-+.+-+.+..+.+... +..+..+..
T Consensus 19 ~~m~~~k~~lVTGas~GIG~aia~------~la~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~ 80 (279)
T 3sju_A 19 SHMSRPQTAFVTGVSSGIGLAVAR------TLAA---------RGIAVYGCARDAKNVSAAVDGLRAA---GHDVDGSSC 80 (279)
T ss_dssp ------CEEEEESTTSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHTT---TCCEEEEEC
T ss_pred ccccCCCEEEEeCCCCHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEC
Confidence 345678888888776646765543 2332 3667887877777666666655543 444555555
Q ss_pred CCCHHHHHHHhh------cCCCcEEEeCHH
Q 008235 292 GAAIDHQITGLR------SCEPEFLVSTPE 315 (573)
Q Consensus 292 g~~~~~~~~~l~------~~~~~IlV~TP~ 315 (573)
..........+. .+++|+||-..|
T Consensus 81 Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg 110 (279)
T 3sju_A 81 DVTSTDEVHAAVAAAVERFGPIGILVNSAG 110 (279)
T ss_dssp CTTCHHHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 554443332221 136899998765
No 324
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=35.97 E-value=28 Score=34.80 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=23.7
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS 264 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P 264 (573)
.|+-+++.+|.| +|||.. ++-++..+.. .+..++|+.-
T Consensus 60 ~G~iv~I~G~pG-sGKTtL-al~la~~~~~---------~g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPES-SGKTTV-ALHAVANAQA---------AGGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTT-SSHHHH-HHHHHHHHHH---------TTCCEEEEES
T ss_pred CCeEEEEECCCC-CCHHHH-HHHHHHHHHh---------CCCeEEEEEC
Confidence 356688889999 999954 4444433332 2445666653
No 325
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=35.96 E-value=38 Score=28.37 Aligned_cols=35 Identities=9% Similarity=0.092 Sum_probs=28.2
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCCeeeecCCC
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~ 467 (573)
..+++|||.+-..+...+..|...|+.-+..+.|.
T Consensus 91 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG 125 (139)
T 3d1p_A 91 AKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGS 125 (139)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTH
T ss_pred CCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCc
Confidence 57899999999999999999999999633334554
No 326
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=35.79 E-value=30 Score=28.70 Aligned_cols=35 Identities=6% Similarity=0.014 Sum_probs=28.4
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCC-eeeecCCCH
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS-ISTGSNCIV 468 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~-~~~~~~~~~ 468 (573)
..+++|||.+-..+...+..|...|+. +.. +.|..
T Consensus 82 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~-l~GG~ 117 (129)
T 1tq1_A 82 SDNIIVGCQSGGRSIKATTDLLHAGFTGVKD-IVGGY 117 (129)
T ss_dssp TSSEEEEESSCSHHHHHHHHHHHHHCCSEEE-EECCH
T ss_pred CCeEEEECCCCcHHHHHHHHHHHcCCCCeEE-eCCcH
Confidence 579999999988999999999999996 544 35543
No 327
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=35.77 E-value=26 Score=34.93 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=16.0
Q ss_pred cCCcEEEEeCCCchhHHHHH
Q 008235 216 SAKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf 235 (573)
.+..+++..|+| +|||...
T Consensus 50 ~~~~vll~GppG-tGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTG-SGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTT-SSHHHHH
T ss_pred CCCeEEEECCCC-CCHHHHH
Confidence 357899999999 9999753
No 328
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=35.56 E-value=38 Score=28.55 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=20.6
Q ss_pred cEEEEeCcccccC--cchHHHHHHhc-CCCCcEEEEec
Q 008235 332 SLLVVDRLDSLSK--GDTLSLIRQSI-SGKPHTVVFND 366 (573)
Q Consensus 332 ~~lViDEad~ll~--~~~l~~Il~~l-~~~~q~l~~SA 366 (573)
..|+|||+|.+-. ...+..++... +.+..+++.|.
T Consensus 77 ~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 77 GVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 5899999998864 33444444433 23445555443
No 329
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=35.47 E-value=22 Score=34.68 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.7
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.+..+++..|+| +|||+.
T Consensus 24 ~~~~vLi~Ge~G-tGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSG-TGKELV 41 (304)
T ss_dssp TTSCEEEESCTT-SCHHHH
T ss_pred CCCcEEEECCCC-chHHHH
Confidence 457899999999 999975
No 330
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=35.41 E-value=38 Score=29.93 Aligned_cols=14 Identities=0% Similarity=-0.365 Sum_probs=10.9
Q ss_pred EEEEeCCCchhHHHH
Q 008235 220 ILETSGSSSTIVQIA 234 (573)
Q Consensus 220 vl~~A~TG~SGKTla 234 (573)
+.++++.| ||||..
T Consensus 7 i~i~G~sG-sGKTTl 20 (169)
T 1xjc_A 7 WQVVGYKH-SGKTTL 20 (169)
T ss_dssp EEEECCTT-SSHHHH
T ss_pred EEEECCCC-CCHHHH
Confidence 55677999 999953
No 331
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=34.91 E-value=34 Score=29.14 Aligned_cols=34 Identities=3% Similarity=-0.099 Sum_probs=27.8
Q ss_pred CCcEEEEecCh--hhHHHHHHHHHHCCCCeeeecCCC
Q 008235 433 PLKVLYIVGKD--SKFQNLVSTLKCKGYSISTGSNCI 467 (573)
Q Consensus 433 ~~k~lIF~~s~--~~~~~l~~~L~~~g~~~~~~~~~~ 467 (573)
..+++|||.+- ..+..++..|...|+++..+ .|.
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l-~GG 107 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKEL-IGG 107 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEE-ESH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEe-CCc
Confidence 57899999987 58899999999999986554 453
No 332
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=34.81 E-value=92 Score=28.50 Aligned_cols=97 Identities=10% Similarity=0.020 Sum_probs=48.8
Q ss_pred EcCChhHHHHH-HHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC----CCCeeeecCCC-HHHHHHHHHhcC
Q 008235 406 VCASDEEKILK-GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK----GYSISTGSNCI-VSHIKNSVEADG 479 (573)
Q Consensus 406 ~~~~~~~k~~~-l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~----g~~~~~~~~~~-~~~~l~~F~~~g 479 (573)
..+....|-.. +..++..+..... ..++||.++++.-+..++..+... ++.+.....|. .....+.+ ..+
T Consensus 73 ~apTGsGKT~~~~l~~l~~l~~~~~---~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l-~~~ 148 (237)
T 3bor_A 73 QAQSGTGKTATFAISILQQLEIEFK---ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKL-QAE 148 (237)
T ss_dssp CCCSSHHHHHHHHHHHHHHCCTTSC---SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC--------------C
T ss_pred ECCCCCcHHHHHHHHHHHHHHhcCC---CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHH-hcC
Confidence 33344556543 4444444332222 569999999999999999888765 34554433332 22233344 344
Q ss_pred CCCCeEEEE----eccccCCCccCCCCEEEe
Q 008235 480 RKRPAVSMI----DKDHISTAELEEYEVVIV 506 (573)
Q Consensus 480 ~~~~l~~lv----d~~s~rGlDip~v~~VI~ 506 (573)
...+++++- +...-..++..++++||.
T Consensus 149 ~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 149 APHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp CCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred CCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 455554410 222112466777777764
No 333
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=34.76 E-value=20 Score=35.42 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=16.9
Q ss_pred HhcCCcEEEEeCCCchhHHHH
Q 008235 214 YSSAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 214 il~g~dvl~~A~TG~SGKTla 234 (573)
+..|..++++.||| ||||..
T Consensus 168 i~~g~~v~i~G~~G-sGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTG-SGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTT-SCHHHH
T ss_pred ccCCCEEEEECCCC-CCHHHH
Confidence 34688999999999 999963
No 334
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=34.68 E-value=1.7e+02 Score=26.72 Aligned_cols=83 Identities=13% Similarity=0.029 Sum_probs=49.7
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+++...+|+-|..++- .+.. .|..++++.-+.+-..++...+... +-++..+.....
T Consensus 7 ~~~k~vlITGas~giG~~~a~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 68 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAE------ALAR---------EGAAVVVADINAEAAEAVAKQIVAD---GGTAISVAVDVS 68 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCEEEEEECCTT
T ss_pred cCCCEEEEECCCChHHHHHHH------HHHH---------CCCEEEEEcCCHHHHHHHHHHHHhc---CCcEEEEEccCC
Confidence 367888888766646765543 3332 3667888888777776666666543 444555555554
Q ss_pred HHHHHHHhhc------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-..|
T Consensus 69 ~~~~~~~~~~~~~~~~g~id~li~~Ag 95 (253)
T 3qiv_A 69 DPESAKAMADRTLAEFGGIDYLVNNAA 95 (253)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4443332211 36888888765
No 335
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.66 E-value=29 Score=34.17 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=25.8
Q ss_pred CCCccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEecc
Q 008235 328 VSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDC 367 (573)
Q Consensus 328 l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SAT 367 (573)
..+.++|||||+|. ++ ...+..++...+.+..+++.|..
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 34678999999998 55 56677777776655555555443
No 336
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=34.35 E-value=23 Score=34.19 Aligned_cols=16 Identities=6% Similarity=-0.234 Sum_probs=14.0
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+-+++..|+| +|||..
T Consensus 37 ~~lLl~GppG-tGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKG-QGKSFQ 52 (293)
T ss_dssp SEEEEEECTT-SCHHHH
T ss_pred eEEEEECCCC-CCHHHH
Confidence 6788999999 999964
No 337
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=34.08 E-value=31 Score=30.56 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=28.1
Q ss_pred CccEEEEeCcccccC---cchHHHHHHhcCCCCcEEEEec
Q 008235 330 GVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFND 366 (573)
Q Consensus 330 ~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~l~~SA 366 (573)
.-.++++||.+.-+| ...+..++..+....|++++|-
T Consensus 86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith 125 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITL 125 (173)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 357999999999999 5666666666666778777753
No 338
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.93 E-value=59 Score=33.41 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=14.6
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+-+|+..|.| +|||+.
T Consensus 207 rGiLL~GPPG-tGKT~l 222 (428)
T 4b4t_K 207 RGVLLYGPPG-TGKTML 222 (428)
T ss_dssp CEEEEESCTT-TTHHHH
T ss_pred ceEEEECCCC-CCHHHH
Confidence 7799999999 999975
No 339
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=33.74 E-value=1.1e+02 Score=34.22 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=38.5
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHh-hcC-CCcEEEeC
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGL-RSC-EPEFLVST 313 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l-~~~-~~~IlV~T 313 (573)
+..+||.|.|++-+..+...+... |+.+.+++|+....+ ...+ ..+ ...|+|||
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~~---gi~~~vLhg~~~~rE-r~ii~~ag~~g~VlIAT 487 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKNK---GIPHQVLNAKNHERE-AQIIEEAGQKGAVTIAT 487 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHTT---TCCCEEECSSCHHHH-HHHHTTTTSTTCEEEEE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHC---CCCEEEeeCCccHHH-HHHHHHcCCCCeEEEeC
Confidence 345999999999998888877664 889999999854332 2222 221 25799999
No 340
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=33.13 E-value=18 Score=37.48 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=49.6
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHH---HHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCc
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~---~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l 331 (573)
.+.++||.+++++.+..+.+.+. +..++|+.+.... ...+.++.++|||+|- +-...+++..+
T Consensus 348 ~~~k~lvF~~~~~~~~~l~~~l~--------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~------~~~~Gldlp~~ 413 (472)
T 2fwr_A 348 RKDKIIIFTRHNELVYRISKVFL--------IPAITHRTSREEREEILEGFRTGRFRAIVSSQ------VLDEGIDVPDA 413 (472)
T ss_dssp SSSCBCCBCSCHHHHHHHHHHTT--------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSS------CCCSSSCSCCB
T ss_pred CCCcEEEEECCHHHHHHHHHHhC--------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcC------chhcCcccccC
Confidence 36689999999999888777653 3356777765433 3445566799999992 12345788899
Q ss_pred cEEEEeCc
Q 008235 332 SLLVVDRL 339 (573)
Q Consensus 332 ~~lViDEa 339 (573)
.++|+-..
T Consensus 414 ~~Vi~~~~ 421 (472)
T 2fwr_A 414 NVGVIMSG 421 (472)
T ss_dssp SEEEEECC
T ss_pred cEEEEECC
Confidence 98887443
No 341
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=33.05 E-value=1.3e+02 Score=28.32 Aligned_cols=83 Identities=17% Similarity=0.115 Sum_probs=48.1
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+||...+|+-|+.++- .+.. .|..++++.-+.+-+.++...+... +-.+..+.....
T Consensus 2 l~~k~~lVTGas~GIG~aia~------~la~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 63 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIAR------ELGV---------AGAKILLGARRQARIEAIATEIRDA---GGTALAQVLDVT 63 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHH------HHHH---------TTCEEEEEESSHHHHHHHHHHHHHT---TCEEEEEECCTT
T ss_pred CCCCEEEEeCCccHHHHHHHH------HHHH---------CCCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEEcCCC
Confidence 356777777655546665543 2332 3667777777776666666655544 445555555554
Q ss_pred HHHHHHHhh------cCCCcEEEeCHH
Q 008235 295 IDHQITGLR------SCEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~------~~~~~IlV~TP~ 315 (573)
.......+. .+++|+||-..|
T Consensus 64 d~~~v~~~~~~~~~~~g~iD~lVnnAG 90 (264)
T 3tfo_A 64 DRHSVAAFAQAAVDTWGRIDVLVNNAG 90 (264)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 444333221 136899998765
No 342
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=32.85 E-value=49 Score=31.56 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=15.6
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.+..+++..|+| +|||..
T Consensus 49 ~~~~vll~G~~G-tGKT~l 66 (310)
T 1ofh_A 49 TPKNILMIGPTG-VGKTEI 66 (310)
T ss_dssp CCCCEEEECCTT-SSHHHH
T ss_pred CCceEEEECCCC-CCHHHH
Confidence 357899999999 999965
No 343
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=32.77 E-value=1.6e+02 Score=27.14 Aligned_cols=83 Identities=13% Similarity=0.068 Sum_probs=48.5
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+|+...+|+-|+.++- .+.. .|..++++.-..+-+.++...+... +-++..+.....
T Consensus 10 l~~k~vlVTGas~gIG~~ia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~ 71 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAG------TFAK---------AGASVVVTDLKSEGAEAVAAAIRQA---GGKAIGLECNVT 71 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHH------HHHH---------HTCEEEEEESSHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEECCCC
Confidence 467888887666546665443 2332 2667777777777666666666544 444444555554
Q ss_pred HHHHHHHhhc------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-..|
T Consensus 72 d~~~v~~~~~~~~~~~g~id~lv~nAg 98 (256)
T 3gaf_A 72 DEQHREAVIKAALDQFGKITVLVNNAG 98 (256)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4433322211 36899998866
No 344
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=32.36 E-value=17 Score=34.60 Aligned_cols=20 Identities=15% Similarity=-0.046 Sum_probs=15.9
Q ss_pred hcCCcEEEEeCCCchhHHHHH
Q 008235 215 SSAKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf 235 (573)
..|.-++++.||| ||||...
T Consensus 23 ~~g~~v~i~Gp~G-sGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTG-SGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTT-CSHHHHH
T ss_pred CCCCEEEEECCCC-ccHHHHH
Confidence 3567788899999 9999653
No 345
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=32.10 E-value=14 Score=32.56 Aligned_cols=19 Identities=16% Similarity=-0.055 Sum_probs=16.1
Q ss_pred hcCCcEEEEeCCCchhHHHH
Q 008235 215 SSAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTla 234 (573)
..++.++++.+.| ||||..
T Consensus 9 ~~~~~i~i~G~~G-sGKst~ 27 (180)
T 3iij_A 9 MLLPNILLTGTPG-VGKTTL 27 (180)
T ss_dssp CCCCCEEEECSTT-SSHHHH
T ss_pred ccCCeEEEEeCCC-CCHHHH
Confidence 3567899999999 999975
No 346
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=32.07 E-value=24 Score=35.20 Aligned_cols=15 Identities=7% Similarity=-0.177 Sum_probs=12.0
Q ss_pred cEEEEeCCCchhHHHH
Q 008235 219 DILETSGSSSTIVQIA 234 (573)
Q Consensus 219 dvl~~A~TG~SGKTla 234 (573)
-++++.||| ||||..
T Consensus 9 lI~I~Gptg-SGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTA-SGKTEL 23 (340)
T ss_dssp EEEEECSTT-SSHHHH
T ss_pred eEEEECCCc-CcHHHH
Confidence 466778999 999954
No 347
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.01 E-value=24 Score=36.43 Aligned_cols=16 Identities=19% Similarity=0.005 Sum_probs=14.8
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+-+|+..|.| +|||+.
T Consensus 216 rGvLLyGPPG-TGKTll 231 (434)
T 4b4t_M 216 KGALMYGPPG-TGKTLL 231 (434)
T ss_dssp CEEEEESCTT-SSHHHH
T ss_pred CeeEEECcCC-CCHHHH
Confidence 7899999999 999975
No 348
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=31.94 E-value=1.6e+02 Score=28.08 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=48.2
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+|+...+|+-|+-++- .+.. .|..++++.-..+-+.++.+.+... +.++..+.....
T Consensus 29 l~gk~vlVTGas~gIG~~la~------~l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 90 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATAT------EFAR---------RGARLVLSDVDQPALEQAVNGLRGQ---GFDAHGVVCDVR 90 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred cCCCEEEEeCCCCHHHHHHHH------HHHH---------CCCEEEEEECCHHHHHHHHHHHHhc---CCceEEEEccCC
Confidence 467888888777646765543 2332 3667777777766666555555443 444444545554
Q ss_pred HHHHHHHhhc------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-+.|
T Consensus 91 d~~~v~~~~~~~~~~~g~id~lvnnAg 117 (301)
T 3tjr_A 91 HLDEMVRLADEAFRLLGGVDVVFSNAG 117 (301)
T ss_dssp CHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 4433332211 36899998766
No 349
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=31.86 E-value=1.4e+02 Score=27.78 Aligned_cols=83 Identities=17% Similarity=0.072 Sum_probs=49.0
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+|+...+|+-|+.++- .+.. .|..++++.-+.+-+.++...+... +..+..+.....
T Consensus 27 l~~k~vlITGas~gIG~~la~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 88 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIAR------KLGS---------LGARVVLTARDVEKLRAVEREIVAA---GGEAESHACDLS 88 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCEEEEEECCTT
T ss_pred cCCCEEEEECCCChHHHHHHH------HHHH---------CCCEEEEEECCHHHHHHHHHHHHHh---CCceeEEEecCC
Confidence 467878887666646665543 3332 3667777777776666666655543 445555555555
Q ss_pred HHHHHHHhhc------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.......+.. +.+|+||-..|
T Consensus 89 ~~~~v~~~~~~~~~~~g~id~lv~~Ag 115 (262)
T 3rkr_A 89 HSDAIAAFATGVLAAHGRCDVLVNNAG 115 (262)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4444332211 35889988765
No 350
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=31.75 E-value=20 Score=35.40 Aligned_cols=15 Identities=0% Similarity=-0.243 Sum_probs=12.1
Q ss_pred cEEEEeCCCchhHHHH
Q 008235 219 DILETSGSSSTIVQIA 234 (573)
Q Consensus 219 dvl~~A~TG~SGKTla 234 (573)
=+++.+||| ||||..
T Consensus 5 ~i~i~Gptg-sGKt~l 19 (322)
T 3exa_A 5 LVAIVGPTA-VGKTKT 19 (322)
T ss_dssp EEEEECCTT-SCHHHH
T ss_pred EEEEECCCc-CCHHHH
Confidence 356789999 999954
No 351
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=31.60 E-value=2e+02 Score=26.94 Aligned_cols=86 Identities=16% Similarity=0.071 Sum_probs=51.5
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+|+...+|+-|..++ ..+.. .|..++++.-+.+-+.+..+.+......+..+..+.+...
T Consensus 9 l~~k~vlVTGas~gIG~aia------~~l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~ 73 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVA------AGLVA---------AGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDIT 73 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHH------HHHHH---------TTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTT
T ss_pred cCCCEEEEeCCCcHHHHHHH------HHHHH---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Confidence 46788888876664666544 33333 3667888877777666666666655332335555555555
Q ss_pred HHHHHHHhhc------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.......+-. +++|+||-..|
T Consensus 74 ~~~~v~~~~~~~~~~~g~id~lv~nAg 100 (281)
T 3svt_A 74 NEDETARAVDAVTAWHGRLHGVVHCAG 100 (281)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4444332211 36899998765
No 352
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=31.56 E-value=20 Score=35.66 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=14.9
Q ss_pred CCcEEEEeCCCchhHHHH
Q 008235 217 AKDILETSGSSSTIVQIA 234 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (573)
++.+++..|+| +|||..
T Consensus 70 ~~~vLl~GppG-tGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPG-TGKTAI 86 (368)
T ss_dssp TCEEEEEESTT-SSHHHH
T ss_pred CCEEEEECCCC-CCHHHH
Confidence 46899999999 999975
No 353
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=31.44 E-value=28 Score=35.62 Aligned_cols=14 Identities=7% Similarity=-0.097 Sum_probs=11.6
Q ss_pred EEEEeCCCchhHHHH
Q 008235 220 ILETSGSSSTIVQIA 234 (573)
Q Consensus 220 vl~~A~TG~SGKTla 234 (573)
+++.+||| ||||..
T Consensus 5 i~i~Gptg-sGKttl 18 (409)
T 3eph_A 5 IVIAGTTG-VGKSQL 18 (409)
T ss_dssp EEEEECSS-SSHHHH
T ss_pred EEEECcch-hhHHHH
Confidence 56778999 999954
No 354
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=31.34 E-value=38 Score=28.32 Aligned_cols=34 Identities=9% Similarity=0.014 Sum_probs=27.9
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCC-eeeecCCC
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS-ISTGSNCI 467 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~-~~~~~~~~ 467 (573)
..+++|||.+-..+..++..|...|+. +.. +.|.
T Consensus 86 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~-l~GG 120 (139)
T 2hhg_A 86 DKKFVFYCAGGLRSALAAKTAQDMGLKPVAH-IEGG 120 (139)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHHHTCCSEEE-ETTH
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCCeEE-ecCC
Confidence 578999999988899999999999996 554 4553
No 355
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=31.21 E-value=20 Score=35.21 Aligned_cols=14 Identities=7% Similarity=-0.062 Sum_probs=11.8
Q ss_pred EEEEeCCCchhHHHH
Q 008235 220 ILETSGSSSTIVQIA 234 (573)
Q Consensus 220 vl~~A~TG~SGKTla 234 (573)
+++++||| ||||..
T Consensus 13 i~i~Gptg-sGKt~l 26 (316)
T 3foz_A 13 IFLMGPTA-SGKTAL 26 (316)
T ss_dssp EEEECCTT-SCHHHH
T ss_pred EEEECCCc-cCHHHH
Confidence 67789999 999954
No 356
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=31.15 E-value=2.1e+02 Score=26.50 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=50.4
Q ss_pred HhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCC
Q 008235 214 YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (573)
Q Consensus 214 il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~ 293 (573)
.+.|+-+|+...+|+-|+.++-. +.. .|..++++.-+.+-+.++.+.+... +.++..+....
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv 69 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARR------CAE---------QGADLVLAARTVERLEDVAKQVTDT---GRRALSVGTDI 69 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCT
T ss_pred CcCCcEEEEECCCcHHHHHHHHH------HHH---------CcCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEcCC
Confidence 35788888887665477765532 222 3677888887777666666665543 44455555555
Q ss_pred CHHHHHHHhh------cCCCcEEEeCHH
Q 008235 294 AIDHQITGLR------SCEPEFLVSTPE 315 (573)
Q Consensus 294 ~~~~~~~~l~------~~~~~IlV~TP~ 315 (573)
........+. .+++|+||-..|
T Consensus 70 ~~~~~v~~~~~~~~~~~g~id~lv~nAg 97 (264)
T 3ucx_A 70 TDDAQVAHLVDETMKAYGRVDVVINNAF 97 (264)
T ss_dssp TCHHHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 5444333221 136888887754
No 357
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=31.10 E-value=19 Score=34.87 Aligned_cols=19 Identities=11% Similarity=-0.050 Sum_probs=15.9
Q ss_pred cCCcEEEEeCCCchhHHHHH
Q 008235 216 SAKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf 235 (573)
.++.+++..|+| +|||+..
T Consensus 48 ~~~~vLL~Gp~G-tGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPG-CGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSS-SSHHHHH
T ss_pred CCceEEEECCCC-cCHHHHH
Confidence 357899999999 9999753
No 358
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=31.06 E-value=22 Score=31.95 Aligned_cols=18 Identities=11% Similarity=-0.143 Sum_probs=15.7
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.++.++++.++| ||||..
T Consensus 24 ~~~~i~l~G~~G-sGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMG-AGKTTL 41 (199)
T ss_dssp CCCEEEEECCTT-SCHHHH
T ss_pred CCCEEEEEcCCC-CCHHHH
Confidence 567899999999 999965
No 359
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=30.90 E-value=51 Score=34.75 Aligned_cols=19 Identities=5% Similarity=0.076 Sum_probs=16.1
Q ss_pred cCCcEEEEeCCCchhHHHHH
Q 008235 216 SAKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf 235 (573)
.+-++++..+|| ||||.+.
T Consensus 166 ~~pHlLIaG~TG-SGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTG-SGASVGV 184 (512)
T ss_dssp GSCSEEEECCTT-SSHHHHH
T ss_pred cCceEEEECCCC-CCHHHHH
Confidence 467999999999 9999653
No 360
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=30.87 E-value=73 Score=29.52 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=23.1
Q ss_pred CHHHHHHHHHcCCCCCCCccEEEEeCcc
Q 008235 313 TPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (573)
Q Consensus 313 TP~rL~~~l~~~~~~l~~l~~lViDEad 340 (573)
||..+++.|....++++++.++-+||--
T Consensus 44 tp~~~y~~L~~~~idw~~v~~f~~DEr~ 71 (226)
T 3lwd_A 44 TPKPFFTSLAAKALPWARVDVTLADERW 71 (226)
T ss_dssp TTHHHHHHHHTSCSCGGGEEEEESEEES
T ss_pred CHHHHHHHHHhcCCCchhEEEEEeeecc
Confidence 6777777777777899999999999953
No 361
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=30.64 E-value=20 Score=34.49 Aligned_cols=17 Identities=18% Similarity=0.061 Sum_probs=15.1
Q ss_pred CCcEEEEeCCCchhHHHH
Q 008235 217 AKDILETSGSSSTIVQIA 234 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (573)
++.+++..|+| +|||..
T Consensus 54 ~~~vll~Gp~G-tGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPG-NGKTLL 70 (297)
T ss_dssp CSEEEEESSSS-SCHHHH
T ss_pred CCeEEEECcCC-CCHHHH
Confidence 57899999999 999975
No 362
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=30.62 E-value=25 Score=31.63 Aligned_cols=19 Identities=5% Similarity=-0.001 Sum_probs=14.6
Q ss_pred cCCcEEEEeCCCchhHHHHH
Q 008235 216 SAKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf 235 (573)
.|+-+.++.|+| +|||...
T Consensus 3 ~g~~i~lvGpsG-aGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSG-AGKSTLL 21 (198)
T ss_dssp --CCEEEECCTT-SSHHHHH
T ss_pred CCCEEEEECCCC-CCHHHHH
Confidence 467789999999 9999653
No 363
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=30.59 E-value=21 Score=33.35 Aligned_cols=17 Identities=12% Similarity=-0.052 Sum_probs=14.8
Q ss_pred CCcEEEEeCCCchhHHHH
Q 008235 217 AKDILETSGSSSTIVQIA 234 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (573)
.+.+++..|+| +|||..
T Consensus 39 ~~~vll~G~~G-tGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPG-CGKTLL 55 (262)
T ss_dssp CCEEEEESCTT-SSHHHH
T ss_pred CceEEEECCCC-CCHHHH
Confidence 47899999999 999965
No 364
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=30.54 E-value=38 Score=30.93 Aligned_cols=31 Identities=0% Similarity=-0.152 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHHH
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTlaf 235 (573)
+.-|..++..+..|.-+.+..|.| ||||..+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nG-sGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAG-SGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTT-SSTTHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCC-CCHHHHH
Confidence 444667788888888888999999 9999643
No 365
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=30.54 E-value=23 Score=31.89 Aligned_cols=16 Identities=19% Similarity=0.059 Sum_probs=13.6
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
|-+++++|+| +|||..
T Consensus 2 RpIVi~GPSG-~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSG-TGKSTL 17 (186)
T ss_dssp CCEEEECCTT-SSHHHH
T ss_pred CEEEEECCCC-CCHHHH
Confidence 4589999999 999864
No 366
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=30.47 E-value=1.2e+02 Score=31.33 Aligned_cols=77 Identities=6% Similarity=0.022 Sum_probs=51.8
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHH---HHhhcC-CCc-EEEeCHHHHHHHHHcCCCCCCC
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSC-EPE-FLVSTPERLLKLVSLKAIDVSG 330 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~---~~l~~~-~~~-IlV~TP~rL~~~l~~~~~~l~~ 330 (573)
+.++||.+.+++.+..+...+... .|+.+..++|+++..... ..++++ .+. ||++|- . -...+++..
T Consensus 341 ~~k~lvF~~~~~~~~~l~~~l~~~--~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~-----~-~~~Glnl~~ 412 (500)
T 1z63_A 341 GDKIAIFTQFVDMGKIIRNIIEKE--LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-----A-GGFGINLTS 412 (500)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHH--HTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC-----C-C-CCCCCTT
T ss_pred CCcEEEEEehHHHHHHHHHHHHHh--hCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc-----c-ccCCCchhh
Confidence 568999999999988888877653 267778889998755443 344443 243 677762 1 123477888
Q ss_pred ccEEEEeCcc
Q 008235 331 VSLLVVDRLD 340 (573)
Q Consensus 331 l~~lViDEad 340 (573)
++.+|+=+.+
T Consensus 413 ~~~vi~~d~~ 422 (500)
T 1z63_A 413 ANRVIHFDRW 422 (500)
T ss_dssp CSEEEESSCC
T ss_pred CCEEEEeCCC
Confidence 8888875543
No 367
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=30.41 E-value=33 Score=34.02 Aligned_cols=50 Identities=6% Similarity=-0.055 Sum_probs=26.8
Q ss_pred HHHHhc-----CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEccc
Q 008235 211 WKCYSS-----AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265 (573)
Q Consensus 211 ip~il~-----g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 265 (573)
+..++. |.-+++.+|+| +|||.. ++-++......... .+.+..++|+.-.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~G-sGKTtl-a~~la~~~~~~~~~---gg~~~~vlyi~~E 165 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFR-TGKTQL-SHTLCVTAQLPGAG---GYPGGKIIFIDTE 165 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTT-CTHHHH-HHHHHHHTTSCBTT---TBCCCEEEEEESS
T ss_pred HHHHhcCCCCCCeEEEEECCCC-CCHHHH-HHHHHHHHhccccc---CCCCCeEEEEECC
Confidence 455554 35577889999 999954 44343332111000 0124567777643
No 368
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=30.30 E-value=20 Score=34.10 Aligned_cols=18 Identities=22% Similarity=0.091 Sum_probs=15.4
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.++.+++..|+| +|||..
T Consensus 50 ~~~~~ll~G~~G-tGKT~l 67 (285)
T 3h4m_A 50 PPKGILLYGPPG-TGKTLL 67 (285)
T ss_dssp CCSEEEEESSSS-SSHHHH
T ss_pred CCCeEEEECCCC-CcHHHH
Confidence 357899999999 999965
No 369
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=30.20 E-value=2.2e+02 Score=26.26 Aligned_cols=83 Identities=13% Similarity=0.049 Sum_probs=46.6
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+++...+|+-|+.++- .+.. .|..++++.-+.+-..++...+... +.++..+.+...
T Consensus 7 l~~k~vlVTGas~giG~~ia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 68 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVE------ELAS---------LGASVYTCSRNQKELNDCLTQWRSK---GFKVEASVCDLS 68 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCEEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEcCCC
Confidence 467888888777656775543 2332 2566777766655544444444332 445555555554
Q ss_pred HHHHHHHhhc-------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS-------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~-------~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-..|
T Consensus 69 ~~~~~~~~~~~~~~~~~g~id~lv~~Ag 96 (260)
T 2ae2_A 69 SRSERQELMNTVANHFHGKLNILVNNAG 96 (260)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCCEEEECCC
Confidence 4443333221 36899998765
No 370
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=30.14 E-value=1.9e+02 Score=26.94 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=46.5
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+++...+|+-|+.++-. +.. .|..++++.-+.+-..++...+... +..+..+.....
T Consensus 19 l~~k~vlVTGas~gIG~aia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 80 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEE------LAG---------LGARVYTCSRNEKELDECLEIWREK---GLNVEGSVCDLL 80 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEECCcchHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEECCCC
Confidence 4678888887776577765532 222 2566777766655444444444332 334444445554
Q ss_pred HHHHHHHhhc-------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS-------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~-------~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-..|
T Consensus 81 ~~~~~~~~~~~~~~~~~g~id~lv~nAg 108 (273)
T 1ae1_A 81 SRTERDKLMQTVAHVFDGKLNILVNNAG 108 (273)
T ss_dssp CHHHHHHHHHHHHHHTTSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCcEEEECCC
Confidence 4433332221 46899998866
No 371
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=29.82 E-value=48 Score=42.41 Aligned_cols=47 Identities=9% Similarity=0.200 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCccCCCCCCCHHHHH----HHHHHhcCCcEEEEeCCCchhHHHHHH
Q 008235 183 LNAIENAMRHDGVEQDNPLFVNSWGIE----FWKCYSSAKDILETSGSSSTIVQIAWI 236 (573)
Q Consensus 183 ~~~i~~~l~~~g~~~p~~~~~t~iQ~~----aip~il~g~dvl~~A~TG~SGKTlaf~ 236 (573)
.+.+.+++.+.++. + ++.+.. .+..+...+-|+++.||| ||||.++-
T Consensus 891 ~~~i~~~~~~~~l~-~-----~~~~~~K~~ql~e~~~~r~gvmlvGptg-sGKTt~~~ 941 (2695)
T 4akg_A 891 VQCLKDAGQRSGFS-M-----SEEFLKKCMQFYYMQKTQQALILVGKAG-CGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHTCC-C-----CHHHHHHHHHHHHHHHHCSEEEEECSTT-SSHHHHHH
T ss_pred HHHHHHHHHHcCCc-c-----cHHHHHHHHHHHHHHHhcceEEEECCCC-CCHHHHHH
Confidence 56666666666543 3 555432 234445567899999999 99999874
No 372
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=29.72 E-value=22 Score=32.12 Aligned_cols=20 Identities=5% Similarity=-0.110 Sum_probs=16.6
Q ss_pred HhcCCcEEEEeCCCchhHHHH
Q 008235 214 YSSAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 214 il~g~dvl~~A~TG~SGKTla 234 (573)
+..|+-++++.|+| ||||..
T Consensus 9 ~~~~~~i~l~G~sG-sGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSG-VGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTT-SCHHHH
T ss_pred cccCCEEEEECCCC-CCHHHH
Confidence 44678899999999 999964
No 373
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=29.55 E-value=2.2e+02 Score=26.05 Aligned_cols=83 Identities=18% Similarity=0.059 Sum_probs=46.4
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+++...+|+-|+.++- .+.. .|..++++.-+.+-..++.+.+... +.++..+.....
T Consensus 5 l~~k~~lVTGas~gIG~aia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 66 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATAR------ALAA---------EGAAVAIAARRVEKLRALGDELTAA---GAKVHVLELDVA 66 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHH------HHHH---------CCCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEECCCC
Confidence 467888888777657776553 2222 3566777766655555555544432 334444445544
Q ss_pred HHHHHHHhh------cCCCcEEEeCHH
Q 008235 295 IDHQITGLR------SCEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~------~~~~~IlV~TP~ 315 (573)
.......+. .+++|+||-..|
T Consensus 67 ~~~~~~~~~~~~~~~~g~id~lv~nAg 93 (247)
T 2jah_A 67 DRQGVDAAVASTVEALGGLDILVNNAG 93 (247)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 433332221 136899998765
No 374
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=29.25 E-value=45 Score=31.91 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCccCCCCCCCHHHHH-HHHHHhcCC-----cEEEEeCCCchhHHHHHH
Q 008235 184 NAIENAMRHDGVEQDNPLFVNSWGIE-FWKCYSSAK-----DILETSGSSSTIVQIAWI 236 (573)
Q Consensus 184 ~~i~~~l~~~g~~~p~~~~~t~iQ~~-aip~il~g~-----dvl~~A~TG~SGKTlaf~ 236 (573)
+.|.+.|+..|+ .|++.. ++..++.|+ .+++..|.| +|||+.+.
T Consensus 73 n~i~~~l~~qg~--------~~~~~~~~l~~~l~~~~~~~n~~~l~Gppg-tGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGY--------DPQYAASVFLGWATKKFGKRNTIWLFGPAT-TGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTC--------CHHHHHHHHHHHHTTCSTTCCEEEEECSTT-SSHHHHHH
T ss_pred HHHHHHHHHcCC--------CHHHHHHHHHHHHhCCCCCCcEEEEECCCC-CCHHHHHH
Confidence 345555555653 446644 356666663 488889999 99997653
No 375
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=29.07 E-value=51 Score=42.75 Aligned_cols=48 Identities=8% Similarity=0.096 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhCCCccCCCCCCCHHHHH-HH---HHHhcCCcEEEEeCCCchhHHHHHH
Q 008235 182 CLNAIENAMRHDGVEQDNPLFVNSWGIE-FW---KCYSSAKDILETSGSSSTIVQIAWI 236 (573)
Q Consensus 182 ~~~~i~~~l~~~g~~~p~~~~~t~iQ~~-ai---p~il~g~dvl~~A~TG~SGKTlaf~ 236 (573)
+..+|.+.+.+.|+. | +|.+.. ++ ..+...+-++++.||| ||||.+|-
T Consensus 873 l~~ai~~~~~~~~L~-~-----~~~~v~KviQLye~~~vRhGvmlVGp~g-sGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-T-----KQEWVEKILQLHQILNINHGVMMVGPSG-GGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-C-----CHHHHHHHHHHHHHHTTCSEEEEECSSS-SSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-c-----CHHHHHHHHHHHHHHHheeeEEEECCCC-CCHHHHHH
Confidence 477888888887654 3 565543 32 3344456799999999 99999874
No 376
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=29.02 E-value=33 Score=37.94 Aligned_cols=25 Identities=4% Similarity=0.098 Sum_probs=19.7
Q ss_pred HHHHHhcCCcEEEE--eCCCchhHHHHH
Q 008235 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (573)
Q Consensus 210 aip~il~g~dvl~~--A~TG~SGKTlaf 235 (573)
.+..+++|.|..+. .+|| ||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtg-sGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTG-SGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTT-SSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCC-Cchhhcc
Confidence 56778899886555 5999 9999763
No 377
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=29.01 E-value=1.9e+02 Score=25.22 Aligned_cols=71 Identities=8% Similarity=0.059 Sum_probs=40.3
Q ss_pred CCcEEEEecChhhHHHHHHHHHHC-----CCCeeeecCCCHH--HHHHHHHhcCCCCCeEEEE----eccccCCCccCCC
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCK-----GYSISTGSNCIVS--HIKNSVEADGRKRPAVSMI----DKDHISTAELEEY 501 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~-----g~~~~~~~~~~~~--~~l~~F~~~g~~~~l~~lv----d~~s~rGlDip~v 501 (573)
..++||.|+++.-+..++..+... ++.+..+ +|+.. .....+ .....++++.. +...-..+++.++
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~--~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 147 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-TGGTNLRDDIMRL--DDTVHVVIATPGRILDLIKKGVAKVDHV 147 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEE-CSSSCHHHHHHHT--TSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEE-eCCccHHHHHHhc--CCCCCEEEeCHHHHHHHHHcCCcCcccC
Confidence 568999999999999988888654 4555543 44322 223333 23344444411 1111114566777
Q ss_pred CEEEe
Q 008235 502 EVVIV 506 (573)
Q Consensus 502 ~~VI~ 506 (573)
++||.
T Consensus 148 ~~lVi 152 (206)
T 1vec_A 148 QMIVL 152 (206)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77763
No 378
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=28.99 E-value=23 Score=31.15 Aligned_cols=18 Identities=6% Similarity=-0.267 Sum_probs=14.9
Q ss_pred CCcEEEEeCCCchhHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (573)
++.++++.++| ||||...
T Consensus 5 ~~~i~l~G~~G-sGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMG-AGKTSVG 22 (185)
T ss_dssp CCEEEEECSTT-SSHHHHH
T ss_pred CCEEEEECCCC-CCHHHHH
Confidence 46789999999 9999653
No 379
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=28.87 E-value=1.3e+02 Score=26.85 Aligned_cols=50 Identities=4% Similarity=-0.008 Sum_probs=32.1
Q ss_pred EEEcCChhHHHHH-HHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC
Q 008235 404 VNVCASDEEKILK-GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK 456 (573)
Q Consensus 404 ~~~~~~~~~k~~~-l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~ 456 (573)
++..+....|-.. +..++..+..... ..++||.|+++.-+..+++.+...
T Consensus 45 lv~a~TGsGKT~~~~~~~l~~l~~~~~---~~~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 45 VGQSQTGTGKTHAYLLPIMEKIKPERA---EVQAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp EEECCSSHHHHHHHHHHHHHHCCTTSC---SCCEEEECSSHHHHHHHHHHHHHH
T ss_pred EEECCCCChHHHHHHHHHHHHHHhCcC---CceEEEEcCcHHHHHHHHHHHHHH
Confidence 3344445566554 4444544433222 568999999999999988877654
No 380
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=28.85 E-value=1.4e+02 Score=28.19 Aligned_cols=83 Identities=12% Similarity=0.043 Sum_probs=50.1
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.||-+|+...+++-|+..| ..+.. .|..+++..-..+-+.++.+.+... +.++..+.....
T Consensus 7 L~gKvalVTGas~GIG~aia------~~la~---------~Ga~Vvi~~~~~~~~~~~~~~l~~~---g~~~~~~~~Dv~ 68 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYA------EGLAA---------AGARVILNDIRATLLAESVDTLTRK---GYDAHGVAFDVT 68 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHH------HHHHH---------TTCEEEECCSCHHHHHHHHHHHHHT---TCCEEECCCCTT
T ss_pred CCCCEEEEeCCCcHHHHHHH------HHHHH---------CCCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEEeeCC
Confidence 46788887644433555443 33333 3777777777777666666655544 566666666666
Q ss_pred HHHHHHHhh------cCCCcEEEeCHH
Q 008235 295 IDHQITGLR------SCEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~------~~~~~IlV~TP~ 315 (573)
...+...+- .++.||||-..|
T Consensus 69 ~~~~v~~~~~~~~~~~G~iDiLVNNAG 95 (255)
T 4g81_D 69 DELAIEAAFSKLDAEGIHVDILINNAG 95 (255)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHCCCCcEEEECCC
Confidence 555543331 146899998765
No 381
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=28.85 E-value=34 Score=34.32 Aligned_cols=19 Identities=0% Similarity=-0.169 Sum_probs=14.8
Q ss_pred cCCc--EEEEeCCCchhHHHHH
Q 008235 216 SAKD--ILETSGSSSTIVQIAW 235 (573)
Q Consensus 216 ~g~d--vl~~A~TG~SGKTlaf 235 (573)
.|.+ +++..+|| ||||.+.
T Consensus 82 ~G~n~tifAYGqTG-SGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTG-SGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTT-SSHHHHH
T ss_pred CCceeEEEeeCCCC-CCCCEEE
Confidence 4777 46667999 9999774
No 382
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=28.81 E-value=22 Score=32.41 Aligned_cols=19 Identities=11% Similarity=-0.022 Sum_probs=16.0
Q ss_pred hcCCcEEEEeCCCchhHHHH
Q 008235 215 SSAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTla 234 (573)
..|+=+++++|+| +|||..
T Consensus 17 ~~g~~ivl~GPSG-aGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASG-VGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTT-SSHHHH
T ss_pred CCCCEEEEECcCC-CCHHHH
Confidence 3678888999999 999964
No 383
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=28.80 E-value=23 Score=35.20 Aligned_cols=16 Identities=13% Similarity=-0.078 Sum_probs=13.2
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+-++++.||| ||||-.
T Consensus 41 ~lIvI~GPTg-sGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATG-TGKSRL 56 (339)
T ss_dssp EEEEEECSTT-SSHHHH
T ss_pred ceEEEECCCC-CCHHHH
Confidence 4578889999 999954
No 384
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=28.46 E-value=1.7e+02 Score=27.22 Aligned_cols=85 Identities=18% Similarity=0.096 Sum_probs=46.9
Q ss_pred HHhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE-cccHHHHHHHHHHHhhhhcCCcEEEEeCC
Q 008235 213 CYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL-VSSQEKAAKVRSVCKPLKAFGIHTVSLHP 291 (573)
Q Consensus 213 ~il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil-~PtreLa~Qi~~~~~~l~~~~i~~~~~~g 291 (573)
.+..++-+||...+|+-|+.++- .+.. .|..++++ ....+...++...+... +-++..+..
T Consensus 22 ~m~~~k~vlITGas~gIG~a~a~------~l~~---------~G~~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 83 (272)
T 4e3z_A 22 SMSDTPVVLVTGGSRGIGAAVCR------LAAR---------QGWRVGVNYAANREAADAVVAAITES---GGEAVAIPG 83 (272)
T ss_dssp --CCSCEEEETTTTSHHHHHHHH------HHHH---------TTCEEEEEESSCHHHHHHHHHHHHHT---TCEEEEEEC
T ss_pred hccCCCEEEEECCCchHHHHHHH------HHHH---------CCCEEEEEcCCChhHHHHHHHHHHhc---CCcEEEEEc
Confidence 34566777776655546665443 3332 35666665 66777766666665544 445555555
Q ss_pred CCCHHHHHHHhhc------CCCcEEEeCHH
Q 008235 292 GAAIDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 292 g~~~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
..........+.. +++|+||-..|
T Consensus 84 Dl~~~~~v~~~~~~~~~~~g~id~li~nAg 113 (272)
T 4e3z_A 84 DVGNAADIAAMFSAVDRQFGRLDGLVNNAG 113 (272)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 5554433332211 36888887765
No 385
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.37 E-value=82 Score=32.39 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=14.8
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+-+|+..|.| +|||+.
T Consensus 217 rGvLLyGPPG-TGKTlL 232 (437)
T 4b4t_I 217 KGVILYGAPG-TGKTLL 232 (437)
T ss_dssp SEEEEESSTT-TTHHHH
T ss_pred CCCceECCCC-chHHHH
Confidence 7899999999 999975
No 386
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.21 E-value=51 Score=34.24 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=14.7
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+-+|+..|.| +|||+.
T Consensus 244 rGILLyGPPG-TGKTlL 259 (467)
T 4b4t_H 244 KGILLYGPPG-TGKTLC 259 (467)
T ss_dssp SEEEECSCTT-SSHHHH
T ss_pred CceEeeCCCC-CcHHHH
Confidence 7899999999 999975
No 387
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=28.11 E-value=38 Score=28.27 Aligned_cols=31 Identities=6% Similarity=0.035 Sum_probs=26.2
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCC-eeee
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS-ISTG 463 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~-~~~~ 463 (573)
..+++|||.+-..+...+..|...|+. +..+
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l 105 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNGFKSAYAI 105 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHTCSEEEEC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcCCcceEEe
Confidence 568999999988889999999999996 5444
No 388
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=27.98 E-value=2.1e+02 Score=26.54 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=45.2
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.++-+++...+|+-|+.++- .+.. .|..++++.-..+-...+...+... +.++..+.+...
T Consensus 29 l~~k~vlITGasggIG~~la~------~L~~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~ 90 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAY------EFAK---------LKSKLVLWDINKHGLEETAAKCKGL---GAKVHTFVVDCS 90 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred cCCCEEEEECCCchHHHHHHH------HHHH---------CCCEEEEEEcCHHHHHHHHHHHHhc---CCeEEEEEeeCC
Confidence 467888888777756765543 2332 2556777766655444444444433 334444445544
Q ss_pred HHHHHHHhh------cCCCcEEEeCHH
Q 008235 295 IDHQITGLR------SCEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~------~~~~~IlV~TP~ 315 (573)
.......+. .+++|+||-..|
T Consensus 91 ~~~~v~~~~~~~~~~~g~iD~li~~Ag 117 (272)
T 1yb1_A 91 NREDIYSSAKKVKAEIGDVSILVNNAG 117 (272)
T ss_dssp CHHHHHHHHHHHHHHTCCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHCCCCcEEEECCC
Confidence 333332221 136888887765
No 389
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=27.95 E-value=26 Score=31.73 Aligned_cols=18 Identities=11% Similarity=-0.138 Sum_probs=14.7
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.|+=++++.|+| +|||..
T Consensus 7 ~g~~i~l~GpsG-sGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSG-VGKGTV 24 (208)
T ss_dssp CCCEEEEECCTT-SCHHHH
T ss_pred CCcEEEEECcCC-CCHHHH
Confidence 456678889999 999964
No 390
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.91 E-value=31 Score=35.61 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=14.8
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+-+|+..|.| +|||+.
T Consensus 216 rGvLL~GPPG-tGKTll 231 (437)
T 4b4t_L 216 KGVLLYGPPG-TGKTLL 231 (437)
T ss_dssp CEEEEESCTT-SSHHHH
T ss_pred CeEEEECCCC-CcHHHH
Confidence 7899999999 999975
No 391
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=27.91 E-value=1.3e+02 Score=33.41 Aligned_cols=70 Identities=9% Similarity=0.045 Sum_probs=45.5
Q ss_pred CCcEEEEecChhhHHHHHHHHHHC----CCCeeeecCCCH-----HHHHHHHHhcCCCCCeEEEEeccccCCCccCCCCE
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCK----GYSISTGSNCIV-----SHIKNSVEADGRKRPAVSMIDKDHISTAELEEYEV 503 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~-----~~~l~~F~~~g~~~~l~~lvd~~s~rGlDip~v~~ 503 (573)
+.+++|.++|+.-|..++..+... |+.+..+ +|.. ...++.+ .+|...+++++-... ...+.+.++.+
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l-~G~~~~~~r~~~~~~l-~~g~~~IvVgT~~ll-~~~~~~~~l~l 493 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALL-IGATTPSEKEKIKSGL-RNGQIDVVIGTHALI-QEDVHFKNLGL 493 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEEC-CSSSCHHHHHHHHHHH-HSSCCCEEEECTTHH-HHCCCCSCCCE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEE-eCCCCHHHHHHHHHHH-hcCCCCEEEECHHHH-hhhhhccCCce
Confidence 469999999999998888777643 6787764 5532 3356667 777777765511111 01566666666
Q ss_pred EE
Q 008235 504 VI 505 (573)
Q Consensus 504 VI 505 (573)
||
T Consensus 494 VV 495 (780)
T 1gm5_A 494 VI 495 (780)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 392
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=27.88 E-value=24 Score=33.06 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=14.1
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+.+++..|+| +|||..
T Consensus 46 ~~vll~G~~G-tGKT~l 61 (257)
T 1lv7_A 46 KGVLMVGPPG-TGKTLL 61 (257)
T ss_dssp CEEEEECCTT-SCHHHH
T ss_pred CeEEEECcCC-CCHHHH
Confidence 5699999999 999965
No 393
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=27.85 E-value=1.5e+02 Score=27.95 Aligned_cols=83 Identities=12% Similarity=-0.036 Sum_probs=48.0
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+||...+|+-|+.++ ..+.. .|..++++.-+.+-+.++...+.. .+.++..+.....
T Consensus 6 l~gk~vlVTGas~GIG~aia------~~la~---------~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~ 67 (280)
T 3tox_A 6 LEGKIAIVTGASSGIGRAAA------LLFAR---------EGAKVVVTARNGNALAELTDEIAG---GGGEAAALAGDVG 67 (280)
T ss_dssp TTTCEEEESSTTSHHHHHHH------HHHHH---------TTCEEEECCSCHHHHHHHHHHHTT---TTCCEEECCCCTT
T ss_pred CCCCEEEEECCCcHHHHHHH------HHHHH---------CCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEECCCC
Confidence 45777777765554666544 23332 366777777766655555555443 3455566666655
Q ss_pred HHHHHHHhhc------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-..|
T Consensus 68 ~~~~v~~~~~~~~~~~g~iD~lvnnAg 94 (280)
T 3tox_A 68 DEALHEALVELAVRRFGGLDTAFNNAG 94 (280)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4444433321 36899998765
No 394
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=27.77 E-value=2.4e+02 Score=25.58 Aligned_cols=87 Identities=16% Similarity=0.085 Sum_probs=47.5
Q ss_pred HhcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCC
Q 008235 214 YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (573)
Q Consensus 214 il~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~ 293 (573)
.+.|+-+++...+|+-|+.++ ..+.. .|..++++.-+.+-..++.+.+.........+..+.-..
T Consensus 11 ~l~~k~vlITGas~gIG~~ia------~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~ 75 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAA------RAYAA---------HGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLEN 75 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHH------HHHHH---------TTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTT
T ss_pred cCCCCEEEEeCCCChHHHHHH------HHHHH---------CCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEecccc
Confidence 357788888766654666544 33333 366788888777776677776665532334333332211
Q ss_pred CHHHHHHH----hh--cCCCcEEEeCHH
Q 008235 294 AIDHQITG----LR--SCEPEFLVSTPE 315 (573)
Q Consensus 294 ~~~~~~~~----l~--~~~~~IlV~TP~ 315 (573)
........ +. .+++|+||-..|
T Consensus 76 ~~~~~~~~~~~~~~~~~g~id~lv~nAg 103 (247)
T 3i1j_A 76 ATAQQYRELAARVEHEFGRLDGLLHNAS 103 (247)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 22222211 11 136888887765
No 395
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=27.43 E-value=44 Score=32.85 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=26.9
Q ss_pred CCCccEEEEeCccc-ccC--cchHHHHHHhcCCCCcEEEEeccC
Q 008235 328 VSGVSLLVVDRLDS-LSK--GDTLSLIRQSISGKPHTVVFNDCL 368 (573)
Q Consensus 328 l~~l~~lViDEad~-ll~--~~~l~~Il~~l~~~~q~l~~SAT~ 368 (573)
+..-+++||||+|. |.. ...+..+++..+++..+++.+.++
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~ 117 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKL 117 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCC
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 45678999999998 654 555666666655555555544443
No 396
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=27.33 E-value=26 Score=30.53 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=14.0
Q ss_pred CCcEEEEeCCCchhHHHH
Q 008235 217 AKDILETSGSSSTIVQIA 234 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (573)
++-++++.+.| ||||..
T Consensus 3 ~~~i~l~G~~G-sGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSS-AGKSGI 19 (178)
T ss_dssp CCEEEEECCTT-SSHHHH
T ss_pred ceEEEEECCCC-CCHHHH
Confidence 45678889999 999965
No 397
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=27.28 E-value=1.2e+02 Score=28.83 Aligned_cols=46 Identities=13% Similarity=0.023 Sum_probs=35.1
Q ss_pred CCcEEEEec---------------------ChhhHHHHHHHHHHCCCCeeeecC---CCHHHHHHHHHhc
Q 008235 433 PLKVLYIVG---------------------KDSKFQNLVSTLKCKGYSISTGSN---CIVSHIKNSVEAD 478 (573)
Q Consensus 433 ~~k~lIF~~---------------------s~~~~~~l~~~L~~~g~~~~~~~~---~~~~~~l~~F~~~ 478 (573)
.+-+|||.| +...++.|...|...|+.+..... .++.+.+++|.+.
T Consensus 17 rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~ 86 (271)
T 3h11_B 17 RGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLM 86 (271)
T ss_dssp CCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHS
T ss_pred CCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHh
Confidence 467888887 446899999999999999875422 3566789999553
No 398
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=27.17 E-value=35 Score=32.63 Aligned_cols=16 Identities=6% Similarity=-0.016 Sum_probs=13.6
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+.+++..|.| +|||..
T Consensus 45 ~GvlL~Gp~G-tGKTtL 60 (274)
T 2x8a_A 45 AGVLLAGPPG-CGKTLL 60 (274)
T ss_dssp SEEEEESSTT-SCHHHH
T ss_pred CeEEEECCCC-CcHHHH
Confidence 3499999999 999964
No 399
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=27.09 E-value=2.3e+02 Score=26.45 Aligned_cols=83 Identities=20% Similarity=0.157 Sum_probs=46.9
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE-cccHHHHHHHHHHHhhhhcCCcEEEEeCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL-VSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil-~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~ 293 (573)
+.|+-+||...+|+-|+-++- .+.. .|..++++ ....+.+.++...+... +.++..+.+..
T Consensus 29 l~gk~~lVTGas~GIG~aia~------~la~---------~G~~V~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~Dv 90 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAK------RLAL---------EGAAVALTYVNAAERAQAVVSEIEQA---GGRAVAIRADN 90 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEEESSCHHHHHHHHHHHHHT---TCCEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHH------HHHH---------CCCEEEEEeCCCHHHHHHHHHHHHhc---CCcEEEEECCC
Confidence 467888888766546765443 3332 36666665 44455555555555544 44555555555
Q ss_pred CHHHHHHHhh------cCCCcEEEeCHH
Q 008235 294 AIDHQITGLR------SCEPEFLVSTPE 315 (573)
Q Consensus 294 ~~~~~~~~l~------~~~~~IlV~TP~ 315 (573)
........+. .+++|+||-..|
T Consensus 91 ~d~~~v~~~~~~~~~~~g~iD~lvnnAg 118 (271)
T 3v2g_A 91 RDAEAIEQAIRETVEALGGLDILVNSAG 118 (271)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 5444333221 136899998765
No 400
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=27.08 E-value=1.7e+02 Score=27.31 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=45.5
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc-cHHHHHHHHHHHhhhhcCCcEEEEeCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS-SQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P-treLa~Qi~~~~~~l~~~~i~~~~~~gg~ 293 (573)
+.|+-+++...+|+-|+.++ ..+.. .|..++++.- ..+....+...+... +.++..+....
T Consensus 27 l~~k~vlITGas~gIG~~la------~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~ 88 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIA------KTLAS---------MGLKVWINYRSNAEVADALKNELEEK---GYKAAVIKFDA 88 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHH------HHHHH---------TTCEEEEEESSCHHHHHHHHHHHHHT---TCCEEEEECCT
T ss_pred cCCCEEEEECCCcHHHHHHH------HHHHH---------CCCEEEEEeCCCHHHHHHHHHHHHhc---CCceEEEECCC
Confidence 35777887765554566444 33332 3667777765 455555555555544 44455555554
Q ss_pred CHHHHHHHhhc------CCCcEEEeCHH
Q 008235 294 AIDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 294 ~~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
........+.. +++|+||-..|
T Consensus 89 ~~~~~v~~~~~~~~~~~g~id~li~nAg 116 (271)
T 4iin_A 89 ASESDFIEAIQTIVQSDGGLSYLVNNAG 116 (271)
T ss_dssp TCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 43333322211 36888888765
No 401
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=26.89 E-value=1.3e+02 Score=27.84 Aligned_cols=83 Identities=14% Similarity=0.041 Sum_probs=48.7
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+|+...+|+-|+.++- .+.. .|..++++.-+.+-+.++...+... +.++..+.....
T Consensus 5 ~~~k~vlVTGas~GIG~aia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~ 66 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAK------KFAA---------EGFTVFAGRRNGEKLAPLVAEIEAA---GGRIVARSLDAR 66 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHH------HHHH---------TTCEEEEEESSGGGGHHHHHHHHHT---TCEEEEEECCTT
T ss_pred CCCCEEEEECCCchHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEECcCC
Confidence 467888888766646775543 2332 3667777776665555555555443 445555555555
Q ss_pred HHHHHHHhhc-----CCCcEEEeCHH
Q 008235 295 IDHQITGLRS-----CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~-----~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-..|
T Consensus 67 ~~~~v~~~~~~~~~~g~id~lv~nAg 92 (252)
T 3h7a_A 67 NEDEVTAFLNAADAHAPLEVTIFNVG 92 (252)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CHHHHHHHHHHHHhhCCceEEEECCC
Confidence 4444333221 36788987765
No 402
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=26.84 E-value=27 Score=31.20 Aligned_cols=19 Identities=11% Similarity=-0.122 Sum_probs=15.4
Q ss_pred hcCCcEEEEeCCCchhHHHH
Q 008235 215 SSAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTla 234 (573)
..|.-++++.|+| ||||..
T Consensus 4 ~~g~~i~l~G~~G-sGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSG-VGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTT-SCHHHH
T ss_pred CCCCEEEEECCCC-CCHHHH
Confidence 3567788889999 999864
No 403
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=26.83 E-value=2e+02 Score=26.41 Aligned_cols=86 Identities=13% Similarity=0.006 Sum_probs=48.2
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+|+...+|+-|+.++- .+.. .|..++++.-+.+-+.++.+.+......+..+..+.....
T Consensus 5 ~~~k~~lVTGas~GIG~aia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 69 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAA------GLAT---------DGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDIT 69 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHH------HHHH---------HTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHH------HHHH---------CCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCC
Confidence 456778887666646765443 2332 2667888888777777777766654221123333334444
Q ss_pred HHHHHHHhh------cCCCcEEEeCHH
Q 008235 295 IDHQITGLR------SCEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~------~~~~~IlV~TP~ 315 (573)
.......+- .+++|+||-..|
T Consensus 70 ~~~~v~~~~~~~~~~~g~iD~lvnnAg 96 (250)
T 3nyw_A 70 DCTKADTEIKDIHQKYGAVDILVNAAA 96 (250)
T ss_dssp CHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 333322221 136889988866
No 404
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=26.60 E-value=2.6e+02 Score=22.72 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=28.1
Q ss_pred CCC-CHHHHHHHHhccccCCCcceEEEEeccccHHHHHHHHHHHHHcCCCC
Q 008235 509 FII-SMKNYVEILTSMARHTVSGILHSFFTKDDAAHAGQMIEILEQCGQVV 558 (573)
Q Consensus 509 ~P~-s~~~YiqR~GR~gR~g~~G~~i~~~~~~d~~~~~~l~~~l~~~~~~v 558 (573)
+|. .+..|+.++... =.|+...++..+....-..+..+.+.|+..|..+
T Consensus 61 ~p~~~~~~fl~~l~~~-l~~k~~~~f~t~g~~~~~a~~~l~~~l~~~G~~~ 110 (138)
T 5nul_A 61 LEESEFEPFIEEISTK-ISGKKVALFGSYGWGDGKWMRDFEERMNGYGCVV 110 (138)
T ss_dssp CCTTTHHHHHHHHGGG-CTTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEE
T ss_pred CChHHHHHHHHHHHhh-cCCCEEEEEEecCCCCChHHHHHHHHHHHCCCEE
Confidence 354 789999988653 1222222222222222356788888898877644
No 405
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=26.58 E-value=26 Score=34.29 Aligned_cols=17 Identities=18% Similarity=-0.113 Sum_probs=14.8
Q ss_pred CcEEEEeCCCchhHHHHH
Q 008235 218 KDILETSGSSSTIVQIAW 235 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (573)
+.+++..|+| +|||...
T Consensus 52 ~~vLl~GppG-tGKT~la 68 (322)
T 3eie_A 52 SGILLYGPPG-TGKSYLA 68 (322)
T ss_dssp CEEEEECSSS-SCHHHHH
T ss_pred CeEEEECCCC-CcHHHHH
Confidence 6799999999 9999753
No 406
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=26.55 E-value=1.6e+02 Score=27.17 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=47.8
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+|+...+|+-|+.++ ..+.. .|..++++.-+.+-+.+....+... +-++..+.....
T Consensus 4 l~~k~vlVTGas~gIG~aia------~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~ 65 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMA------TRFAK---------EGARVVITGRTKEKLEEAKLEIEQF---PGQILTVQMDVR 65 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHH------HHHHH---------TTCEEEEEESCHHHHHHHHHHHCCS---TTCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHH------HHHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEccCC
Confidence 46777777665553565444 33333 3667888877777666666655543 344555555555
Q ss_pred HHHHHHHhhc------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-..|
T Consensus 66 ~~~~v~~~~~~~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 66 NTDDIQKMIEQIDEKFGRIDILINNAA 92 (257)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4443332211 36899998765
No 407
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=26.54 E-value=42 Score=30.07 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=25.2
Q ss_pred CCCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEeccCC
Q 008235 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLT 369 (573)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~SAT~~ 369 (573)
+.+.++||+||+..|-. ...+..|.+.+.....+++-+.|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecC
Confidence 56778999999988843 3334444444433333454467764
No 408
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=26.54 E-value=2.3e+02 Score=25.15 Aligned_cols=96 Identities=9% Similarity=0.000 Sum_probs=49.9
Q ss_pred EEEcCChhHHHHH-HHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHC----CCCeeeecCCCHHH--HHHHHH
Q 008235 404 VNVCASDEEKILK-GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK----GYSISTGSNCIVSH--IKNSVE 476 (573)
Q Consensus 404 ~~~~~~~~~k~~~-l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~--~l~~F~ 476 (573)
++..+....|-.. +..++..+..... ..++||.|+++.-+..++..+... ++.+..+ +|.... ..+.+
T Consensus 55 lv~~pTGsGKT~~~~~~~l~~l~~~~~---~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~- 129 (224)
T 1qde_A 55 LAQAQSGTGKTGTFSIAALQRIDTSVK---APQALMLAPTRELALQIQKVVMALAFHMDIKVHAC-IGGTSFVEDAEGL- 129 (224)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTCC---SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEE-CC----------C-
T ss_pred EEECCCCCcHHHHHHHHHHHHHhccCC---CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEE-eCCcchHHHHhcC-
Confidence 3344444556544 4555555433333 579999999999999998887764 5555543 443322 22222
Q ss_pred hcCCCCCeEEEE----eccccCCCccCCCCEEEe
Q 008235 477 ADGRKRPAVSMI----DKDHISTAELEEYEVVIV 506 (573)
Q Consensus 477 ~~g~~~~l~~lv----d~~s~rGlDip~v~~VI~ 506 (573)
....++++.. +...-..+++.++++||.
T Consensus 130 --~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 130 --RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp --TTCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred --CCCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 1234443311 111112566777777763
No 409
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=26.39 E-value=2.4e+02 Score=25.66 Aligned_cols=83 Identities=11% Similarity=0.045 Sum_probs=45.3
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.++-+++...||+-|..++- .+.. .|..++++.-+.+-...+.+.+... +.++..+.+...
T Consensus 11 l~~k~vlItGasggiG~~la~------~l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~ 72 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVT------ALAE---------AGARVIIADLDEAMATKAVEDLRME---GHDVSSVVMDVT 72 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEeCCCchHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEecCC
Confidence 357788888777756665443 3333 2566777776655544444444432 333444445544
Q ss_pred HHHHHHHhhc------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-..|
T Consensus 73 ~~~~~~~~~~~~~~~~~~id~vi~~Ag 99 (260)
T 3awd_A 73 NTESVQNAVRSVHEQEGRVDILVACAG 99 (260)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3333322211 36888887755
No 410
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=26.36 E-value=2.8e+02 Score=24.86 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=47.6
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHH
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID 296 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~ 296 (573)
++-+++...+|+-|+.++- .+.. .|..++++.-+.+-..++...+..- .+.++..+.......
T Consensus 2 ~k~vlITGas~gIG~~ia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~ 64 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIAR------ALAR---------DGYALALGARSVDRLEKIAHELMQE--QGVEVFYHHLDVSKA 64 (235)
T ss_dssp CCEEEEESCSSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHHH--HCCCEEEEECCTTCH
T ss_pred CCEEEEECCCcHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhh--cCCeEEEEEeccCCH
Confidence 5667777666646665543 3333 3667888887777666666555422 144555555555544
Q ss_pred HHHHHhhc------CCCcEEEeCHH
Q 008235 297 HQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 297 ~~~~~l~~------~~~~IlV~TP~ 315 (573)
.....+.. +++|+||-..|
T Consensus 65 ~~v~~~~~~~~~~~g~id~li~~Ag 89 (235)
T 3l77_A 65 ESVEEFSKKVLERFGDVDVVVANAG 89 (235)
T ss_dssp HHHHHHCC-HHHHHSSCSEEEECCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCc
Confidence 44433322 36899998876
No 411
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=26.33 E-value=42 Score=35.12 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=23.7
Q ss_pred CCccEEEEeCcccccC--cchHHHHHHhcCCCCcEEEEe
Q 008235 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (573)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~S 365 (573)
..++++|||||++|-+ ...+..++..+ +.|+|+.+
T Consensus 413 ~~~rlvvlDEA~kmD~~~~~~~~~l~~~l--glQliiat 449 (483)
T 3euj_A 413 LPCRLLFLDQAARLDAMSINTLFELCERL--DMQLLIAA 449 (483)
T ss_dssp CCCCEEEESSGGGSCHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred CceeEEEEeccccCCHHHHHHHHHHHHHc--CCEEEEEC
Confidence 5899999999966653 44444555544 57888643
No 412
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=26.08 E-value=26 Score=29.99 Aligned_cols=14 Identities=21% Similarity=-0.092 Sum_probs=11.8
Q ss_pred EEEEeCCCchhHHHH
Q 008235 220 ILETSGSSSTIVQIA 234 (573)
Q Consensus 220 vl~~A~TG~SGKTla 234 (573)
++++.++| ||||..
T Consensus 4 I~l~G~~G-sGKsT~ 17 (179)
T 3lw7_A 4 ILITGMPG-SGKSEF 17 (179)
T ss_dssp EEEECCTT-SCHHHH
T ss_pred EEEECCCC-CCHHHH
Confidence 67789999 999964
No 413
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=25.94 E-value=73 Score=29.58 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=22.5
Q ss_pred CHHHHHHHHHcCCCCCCCccEEEEeCc
Q 008235 313 TPERLLKLVSLKAIDVSGVSLLVVDRL 339 (573)
Q Consensus 313 TP~rL~~~l~~~~~~l~~l~~lViDEa 339 (573)
||..+++.|....++++++.++-+||-
T Consensus 45 tp~~~y~~L~~~~i~w~~v~~f~~DEr 71 (232)
T 3lhi_A 45 SPIAFFNALSQKDLDWKNVGITLADER 71 (232)
T ss_dssp TTHHHHHHHHTSCCCGGGEEEEESEEE
T ss_pred CHHHHHHHHHhcCCCchheEEEEeeec
Confidence 577777777777789999999999994
No 414
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=25.90 E-value=2.1e+02 Score=26.06 Aligned_cols=95 Identities=9% Similarity=0.010 Sum_probs=52.5
Q ss_pred hhHHHH-HHHHHHHHHhccCC--CCCCCcEEEEecChhhHHHHHHHHHH----CCCCeeeecCCC-HHHHHHHHHhcCCC
Q 008235 410 DEEKIL-KGIQVLDHAYGDHF--HSEPLKVLYIVGKDSKFQNLVSTLKC----KGYSISTGSNCI-VSHIKNSVEADGRK 481 (573)
Q Consensus 410 ~~~k~~-~l~~~L~~~~~~~~--~~~~~k~lIF~~s~~~~~~l~~~L~~----~g~~~~~~~~~~-~~~~l~~F~~~g~~ 481 (573)
...|-. ++..++..+..... .....++||.|+++.-+..++..+.. .++.+..++.|. .......+ ..+ .
T Consensus 76 GsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~-~ 153 (242)
T 3fe2_A 76 GSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL-ERG-V 153 (242)
T ss_dssp TSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH-HHC-C
T ss_pred cCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHh-cCC-C
Confidence 344543 34455555443210 01256899999999999888776655 377777654442 33344555 332 4
Q ss_pred CCeEEEE----eccccCCCccCCCCEEEe
Q 008235 482 RPAVSMI----DKDHISTAELEEYEVVIV 506 (573)
Q Consensus 482 ~~l~~lv----d~~s~rGlDip~v~~VI~ 506 (573)
.+++++- +...-..+++.++++||.
T Consensus 154 ~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 154 EICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp SEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 4544411 222112567888888774
No 415
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=25.83 E-value=1.8e+02 Score=26.41 Aligned_cols=83 Identities=19% Similarity=0.132 Sum_probs=47.3
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+++...+|+-|+-++ ..+.. .|..++++..+.+-..++...+... +.++..+.....
T Consensus 3 l~~k~vlITGas~gIG~~~a------~~l~~---------~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 64 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVA------HALAS---------KGATVVGTATSQASAEKFENSMKEK---GFKARGLVLNIS 64 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHH------HHHHH---------TTCEEEEEESSHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEECCCChHHHHHH------HHHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEecCC
Confidence 35677777766654666544 33332 3667888888777666666655544 444444545544
Q ss_pred HHHHHHHhh------cCCCcEEEeCHH
Q 008235 295 IDHQITGLR------SCEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~------~~~~~IlV~TP~ 315 (573)
.......+. .+++|++|-..|
T Consensus 65 ~~~~~~~~~~~~~~~~~~id~li~~Ag 91 (247)
T 3lyl_A 65 DIESIQNFFAEIKAENLAIDILVNNAG 91 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 433332221 125788887765
No 416
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=25.75 E-value=28 Score=32.84 Aligned_cols=14 Identities=7% Similarity=-0.273 Sum_probs=11.7
Q ss_pred EEEEeCCCchhHHHH
Q 008235 220 ILETSGSSSTIVQIA 234 (573)
Q Consensus 220 vl~~A~TG~SGKTla 234 (573)
++++.||| ||||..
T Consensus 4 i~I~G~~G-SGKSTl 17 (253)
T 2ze6_A 4 HLIYGPTC-SGKTDM 17 (253)
T ss_dssp EEEECCTT-SSHHHH
T ss_pred EEEECCCC-cCHHHH
Confidence 57789999 999964
No 417
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=25.75 E-value=33 Score=32.99 Aligned_cols=17 Identities=6% Similarity=-0.267 Sum_probs=14.2
Q ss_pred CcEEEEeCCCchhHHHHH
Q 008235 218 KDILETSGSSSTIVQIAW 235 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (573)
..+++..|+| +|||...
T Consensus 48 ~~~ll~G~~G-tGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTG-VGKTELA 64 (311)
T ss_dssp EEEEEESCSS-SSHHHHH
T ss_pred eEEEEECCCC-cCHHHHH
Confidence 3689999999 9999653
No 418
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=25.33 E-value=1.6e+02 Score=27.54 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=48.3
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+|+...+|+-|+.++ ..+.. .|..++++.-..+-+.++.+.+... +.++..+.....
T Consensus 24 l~gk~~lVTGas~gIG~aia------~~la~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 85 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGRAMA------EGLAV---------AGARILINGTDPSRVAQTVQEFRNV---GHDAEAVAFDVT 85 (271)
T ss_dssp CTTCEEEETTCSSHHHHHHH------HHHHH---------TTCEEEECCSCHHHHHHHHHHHHHT---TCCEEECCCCTT
T ss_pred CCCCEEEEeCCCcHHHHHHH------HHHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEcCCC
Confidence 46788888765554666544 33333 3667777777766666665555443 445555555555
Q ss_pred HHHHHHHhhc------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-..|
T Consensus 86 d~~~v~~~~~~~~~~~g~iD~lv~nAg 112 (271)
T 4ibo_A 86 SESEIIEAFARLDEQGIDVDILVNNAG 112 (271)
T ss_dssp CHHHHHHHHHHHHHHTCCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence 4444333221 36899998765
No 419
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=25.29 E-value=30 Score=30.61 Aligned_cols=18 Identities=22% Similarity=0.047 Sum_probs=15.3
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.+..++++.+.| ||||..
T Consensus 9 ~~~~I~l~G~~G-sGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPG-TGKTSM 26 (184)
T ss_dssp SSCEEEEECSTT-SSHHHH
T ss_pred CCCEEEEECCCC-CCHHHH
Confidence 467789999999 999965
No 420
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=25.27 E-value=73 Score=34.05 Aligned_cols=26 Identities=8% Similarity=0.015 Sum_probs=18.8
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSI 244 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~ 244 (573)
.-++++...|| ||||.+. -.++..+.
T Consensus 214 ~pHlLIaG~TG-SGKS~~L-~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTG-SGKSVGV-NAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTT-SSHHHHH-HHHHHHHH
T ss_pred CCeeEEECCCC-CCHHHHH-HHHHHHHH
Confidence 46899999999 9999654 44444443
No 421
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=25.23 E-value=2e+02 Score=26.80 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=46.0
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc-cHHHHHHHHHHHhhhhcCCcEEEEeCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS-SQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P-treLa~Qi~~~~~~l~~~~i~~~~~~gg~ 293 (573)
+.|+-+|+...+|+-|+.++- .+.. .|..++++.- ..+.+.++...+... +.++..+....
T Consensus 26 l~~k~vlVTGas~gIG~aia~------~la~---------~G~~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~ 87 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIAL------ELAA---------AGAKVAVNYASSAGAADEVVAAIAAA---GGEAFAVKADV 87 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHH------HHHH---------TTCEEEEEESSCHHHHHHHHHHHHHT---TCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHH------HHHH---------CCCEEEEEeCCChHHHHHHHHHHHhc---CCcEEEEECCC
Confidence 467878877655546665443 2332 3666766655 555555555555543 44455555555
Q ss_pred CHHHHHHHhhc------CCCcEEEeCHH
Q 008235 294 AIDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 294 ~~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
........+.. +++|+||-..|
T Consensus 88 ~d~~~v~~~~~~~~~~~g~id~lv~nAg 115 (269)
T 4dmm_A 88 SQESEVEALFAAVIERWGRLDVLVNNAG 115 (269)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 54443332211 36889988765
No 422
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=25.20 E-value=2.6e+02 Score=26.06 Aligned_cols=83 Identities=14% Similarity=0.066 Sum_probs=45.5
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+++...+|+-|+.++- .+.. .|..++++.-+.+-..++...+... +.++..+.+...
T Consensus 20 l~~k~vlVTGas~gIG~~ia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 81 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIAR------RLGK---------EGLRVFVCARGEEGLRTTLKELREA---GVEADGRTCDVR 81 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEECCCC
Confidence 467888888777657776543 2222 2566777766655444444444433 333444444544
Q ss_pred HHHHHHHhh------cCCCcEEEeCHH
Q 008235 295 IDHQITGLR------SCEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~------~~~~~IlV~TP~ 315 (573)
.......+. .+++|+||-..|
T Consensus 82 ~~~~v~~~~~~~~~~~g~iD~lv~~Ag 108 (277)
T 2rhc_B 82 SVPEIEALVAAVVERYGPVDVLVNNAG 108 (277)
T ss_dssp CHHHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 333332221 135899998765
No 423
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=25.13 E-value=45 Score=29.49 Aligned_cols=15 Identities=13% Similarity=-0.252 Sum_probs=11.6
Q ss_pred cEEEEeCCCchhHHHH
Q 008235 219 DILETSGSSSTIVQIA 234 (573)
Q Consensus 219 dvl~~A~TG~SGKTla 234 (573)
=+++++++| ||||..
T Consensus 8 ~i~i~G~sG-sGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSG-TGKTTL 22 (174)
T ss_dssp EEEEECCTT-SCHHHH
T ss_pred EEEEEeCCC-CCHHHH
Confidence 356778999 999853
No 424
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=25.08 E-value=28 Score=34.18 Aligned_cols=16 Identities=19% Similarity=0.003 Sum_probs=14.5
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+.+++..|+| +|||+.
T Consensus 46 ~~iLL~GppG-tGKT~l 61 (322)
T 1xwi_A 46 RGILLFGPPG-TGKSYL 61 (322)
T ss_dssp SEEEEESSSS-SCHHHH
T ss_pred ceEEEECCCC-ccHHHH
Confidence 7899999999 999965
No 425
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=24.94 E-value=2.8e+02 Score=24.73 Aligned_cols=72 Identities=6% Similarity=-0.043 Sum_probs=41.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHHC---CCCeeeecCCCH-HHHHHHHHhcCCCCCeEEEE----eccccCCCccCCCCEE
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCK---GYSISTGSNCIV-SHIKNSVEADGRKRPAVSMI----DKDHISTAELEEYEVV 504 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~---g~~~~~~~~~~~-~~~l~~F~~~g~~~~l~~lv----d~~s~rGlDip~v~~V 504 (573)
..++||.++++.-+..++..+... ++.+..+++|.. ......+ .. ...+++++. +...-..+++.++++|
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~l 171 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI-SK-GVDIIIATPGRLNDLQMNNSVNLRSITYL 171 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH-HS-CCSEEEECHHHHHHHHHTTCCCCTTCCEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh-cC-CCCEEEECHHHHHHHHHcCCcCcccceEE
Confidence 578999999999999999988874 566665433322 2233444 22 244544411 1111125677778877
Q ss_pred Ee
Q 008235 505 IV 506 (573)
Q Consensus 505 I~ 506 (573)
|.
T Consensus 172 Vi 173 (228)
T 3iuy_A 172 VI 173 (228)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 426
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=24.90 E-value=29 Score=34.97 Aligned_cols=19 Identities=16% Similarity=-0.017 Sum_probs=15.6
Q ss_pred hcCCcEEEEeCCCchhHHHH
Q 008235 215 SSAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTla 234 (573)
..|.-++++.||| ||||..
T Consensus 134 ~~g~~i~ivG~~G-sGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTG-SGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSS-SSHHHH
T ss_pred cCCCEEEEECCCC-CCHHHH
Confidence 3567788999999 999964
No 427
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=24.87 E-value=32 Score=34.38 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=15.4
Q ss_pred CCcEEEEeCCCchhHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (573)
...+++..|+| +|||...
T Consensus 72 ~~~ill~Gp~G-tGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTG-SGKTLMA 89 (376)
T ss_dssp CCCEEEECCTT-SSHHHHH
T ss_pred CCCEEEECCCC-CCHHHHH
Confidence 46899999999 9999653
No 428
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=24.84 E-value=32 Score=34.31 Aligned_cols=18 Identities=17% Similarity=-0.095 Sum_probs=15.2
Q ss_pred CCcEEEEeCCCchhHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (573)
.+.+++..|+| +|||+..
T Consensus 84 ~~~iLL~GppG-tGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPG-TGKSYLA 101 (355)
T ss_dssp CCCEEEECSTT-SCHHHHH
T ss_pred CceEEEECCCC-CcHHHHH
Confidence 36799999999 9999753
No 429
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=24.65 E-value=32 Score=30.68 Aligned_cols=18 Identities=11% Similarity=-0.082 Sum_probs=14.6
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.|.=+.+..|+| ||||..
T Consensus 6 ~g~ii~l~Gp~G-sGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSG-AGKTSL 23 (205)
T ss_dssp CCCEEEEECCTT-SCHHHH
T ss_pred CCcEEEEECcCC-CCHHHH
Confidence 466677889999 999964
No 430
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=24.47 E-value=2.2e+02 Score=26.52 Aligned_cols=83 Identities=14% Similarity=0.085 Sum_probs=45.2
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE-cccHHHHHHHHHHHhhhhcCCcEEEEeCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL-VSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil-~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~ 293 (573)
+.|+-+|+...+|+-|+.++-. +.. .|..++++ ....+.+.++...+... +-++..+....
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~------la~---------~G~~Vv~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl 86 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAAR------LAS---------DGFTVVINYAGKAAAAEEVAGKIEAA---GGKALTAQADV 86 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHH------HHH---------HTCEEEEEESSCSHHHHHHHHHHHHT---TCCEEEEECCT
T ss_pred cCCCEEEEeCCCCHHHHHHHHH------HHH---------CCCEEEEEcCCCHHHHHHHHHHHHhc---CCeEEEEEcCC
Confidence 4688888887666477755532 222 25566665 44455555555555544 33444454555
Q ss_pred CHHHHHHHhhc------CCCcEEEeCHH
Q 008235 294 AIDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 294 ~~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
........+.. +++|+||-..|
T Consensus 87 ~~~~~v~~~~~~~~~~~g~iD~lvnnAG 114 (267)
T 3u5t_A 87 SDPAAVRRLFATAEEAFGGVDVLVNNAG 114 (267)
T ss_dssp TCHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 44443332211 36888888765
No 431
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=24.46 E-value=2.6e+02 Score=24.34 Aligned_cols=100 Identities=11% Similarity=0.095 Sum_probs=52.4
Q ss_pred EEcCChhHHHHH-HHHHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCC--CCeeeecCCC-HHHHHHHHHhcCC
Q 008235 405 NVCASDEEKILK-GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKG--YSISTGSNCI-VSHIKNSVEADGR 480 (573)
Q Consensus 405 ~~~~~~~~k~~~-l~~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g--~~~~~~~~~~-~~~~l~~F~~~g~ 480 (573)
+..+....|-.. +..++..+..........++||.|+++.-+..+++.+.... +.+..++.+. .....+.+ .. .
T Consensus 43 i~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 120 (207)
T 2gxq_A 43 GQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL-LR-G 120 (207)
T ss_dssp EECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH-HH-C
T ss_pred EECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh-hC-C
Confidence 333334556544 44444444321111125789999999999999999988763 4555443332 22233333 22 2
Q ss_pred CCCeEEEE----eccccCCCccCCCCEEEe
Q 008235 481 KRPAVSMI----DKDHISTAELEEYEVVIV 506 (573)
Q Consensus 481 ~~~l~~lv----d~~s~rGlDip~v~~VI~ 506 (573)
..++++.. +......+++.++++||.
T Consensus 121 ~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 121 ADAVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp CSEEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred CCEEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 34444311 111112566777887774
No 432
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=24.36 E-value=1.8e+02 Score=27.28 Aligned_cols=83 Identities=13% Similarity=0.086 Sum_probs=46.7
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+||...+|+-|..++- .+.. .|..++++.-+.+-+.++...+... +..+..+.....
T Consensus 26 l~~k~~lVTGas~GIG~aia~------~la~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~ 87 (270)
T 3ftp_A 26 LDKQVAIVTGASRGIGRAIAL------ELAR---------RGAMVIGTATTEAGAEGIGAAFKQA---GLEGRGAVLNVN 87 (270)
T ss_dssp TTTCEEEETTCSSHHHHHHHH------HHHH---------TTCEEEEEESSHHHHHHHHHHHHHH---TCCCEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEEeCC
Confidence 467777776555536665442 3332 3677888888777766666666554 333333334444
Q ss_pred HHHHHHHhh------cCCCcEEEeCHH
Q 008235 295 IDHQITGLR------SCEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~------~~~~~IlV~TP~ 315 (573)
.......+. .+++|+||-..|
T Consensus 88 d~~~v~~~~~~~~~~~g~iD~lvnnAg 114 (270)
T 3ftp_A 88 DATAVDALVESTLKEFGALNVLVNNAG 114 (270)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 333332221 136899998765
No 433
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=24.36 E-value=36 Score=31.15 Aligned_cols=18 Identities=6% Similarity=-0.162 Sum_probs=15.6
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.|+=+.++.|+| +|||..
T Consensus 22 ~G~~~~lvGpsG-sGKSTL 39 (218)
T 1z6g_A 22 NIYPLVICGPSG-VGKGTL 39 (218)
T ss_dssp CCCCEEEECSTT-SSHHHH
T ss_pred CCCEEEEECCCC-CCHHHH
Confidence 678888999999 999964
No 434
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=24.10 E-value=2.9e+02 Score=26.02 Aligned_cols=83 Identities=17% Similarity=0.098 Sum_probs=47.1
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEccc--HHHHHHHHHHHhhhhcCCcEEEEeCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS--QEKAAKVRSVCKPLKAFGIHTVSLHPG 292 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Pt--reLa~Qi~~~~~~l~~~~i~~~~~~gg 292 (573)
+.|+-+||...+|+-|+.++- .+.. .|..++++.-. .+.+.++...+... +.++..+.+.
T Consensus 47 l~~k~vlVTGas~GIG~aia~------~la~---------~G~~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D 108 (294)
T 3r3s_A 47 LKDRKALVTGGDSGIGRAAAI------AYAR---------EGADVAINYLPAEEEDAQQVKALIEEC---GRKAVLLPGD 108 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEECCGGGHHHHHHHHHHHHHT---TCCEEECCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHH------HHHH---------CCCEEEEEeCCcchhHHHHHHHHHHHc---CCcEEEEEec
Confidence 467888888766646765543 2332 36666665543 34444555554443 4555666666
Q ss_pred CCHHHHHHHhhc------CCCcEEEeCHH
Q 008235 293 AAIDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 293 ~~~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.........+.. +++|+||-..|
T Consensus 109 v~d~~~v~~~~~~~~~~~g~iD~lv~nAg 137 (294)
T 3r3s_A 109 LSDESFARSLVHKAREALGGLDILALVAG 137 (294)
T ss_dssp TTSHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 554444333221 36899988765
No 435
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=23.96 E-value=2.9e+02 Score=25.88 Aligned_cols=83 Identities=14% Similarity=0.067 Sum_probs=48.0
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.++-+|+...+|+-|+.++ ..+.. .|..++++.-..+-+.++...+... +-++..+.....
T Consensus 26 ~~~k~~lVTGas~GIG~aia------~~la~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 87 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATA------LALAA---------DGVTVGALGRTRTEVEEVADEIVGA---GGQAIALEADVS 87 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHH------HHHHH---------TTCEEEEEESSHHHHHHHHHHHTTT---TCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHH------HHHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEccCC
Confidence 35777888766654676554 23332 3667888887777666666655443 444555555554
Q ss_pred HHHHHHHhhc------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-..|
T Consensus 88 d~~~v~~~~~~~~~~~g~iD~lVnnAg 114 (283)
T 3v8b_A 88 DELQMRNAVRDLVLKFGHLDIVVANAG 114 (283)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 4433322211 36899998765
No 436
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=23.92 E-value=1e+02 Score=28.57 Aligned_cols=27 Identities=41% Similarity=0.603 Sum_probs=22.4
Q ss_pred CHHHHHHHHHcCCCCCCCccEEEEeCc
Q 008235 313 TPERLLKLVSLKAIDVSGVSLLVVDRL 339 (573)
Q Consensus 313 TP~rL~~~l~~~~~~l~~l~~lViDEa 339 (573)
||..+++.|....++++++.++-+||-
T Consensus 48 tp~~~y~~L~~~~idw~~v~~f~~DEr 74 (233)
T 3nwp_A 48 TPLKLFQLLSMKSIDWSDVYITLADER 74 (233)
T ss_dssp TTHHHHHHHHHCCSCGGGEEEEESEEE
T ss_pred CHHHHHHHHHhcCCChhHeEEEeCeec
Confidence 567777777777789999999999994
No 437
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=23.81 E-value=40 Score=32.27 Aligned_cols=15 Identities=13% Similarity=0.014 Sum_probs=13.4
Q ss_pred cEEEEeCCCchhHHHH
Q 008235 219 DILETSGSSSTIVQIA 234 (573)
Q Consensus 219 dvl~~A~TG~SGKTla 234 (573)
.+++..|+| +|||..
T Consensus 40 ~~ll~G~~G-~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPG-TGKTAT 54 (319)
T ss_dssp CEEEESSSS-SSHHHH
T ss_pred eEEEECcCC-cCHHHH
Confidence 599999999 999964
No 438
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=23.79 E-value=32 Score=35.64 Aligned_cols=18 Identities=11% Similarity=-0.032 Sum_probs=15.4
Q ss_pred CCcEEEEeCCCchhHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (573)
++.+++..|+| +|||...
T Consensus 63 ~~~iLl~GppG-tGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPG-TGKTALA 80 (456)
T ss_dssp TCEEEEECCTT-SSHHHHH
T ss_pred CCeEEEECCCc-CCHHHHH
Confidence 37899999999 9999653
No 439
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=23.52 E-value=2e+02 Score=26.32 Aligned_cols=83 Identities=20% Similarity=0.187 Sum_probs=45.0
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc-cHHHHHHHHHHHhhhhcCCcEEEEeCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS-SQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P-treLa~Qi~~~~~~l~~~~i~~~~~~gg~ 293 (573)
+.++-+++...+|+-|+.++ ..+.. .|..++++.- ..+.+.++.+.+... +.++..+.+..
T Consensus 2 l~~k~~lVTGas~gIG~~ia------~~l~~---------~G~~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv 63 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIA------LQLAE---------EGYNVAVNYAGSKEKAEAVVEEIKAK---GVDSFAIQANV 63 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHH------HHHHH---------TTCEEEEEESSCHHHHHHHHHHHHHT---TSCEEEEECCT
T ss_pred CCCCEEEEECCCChHHHHHH------HHHHH---------CCCEEEEEeCCCHHHHHHHHHHHHhc---CCcEEEEEccC
Confidence 34666777655553566444 33333 3666666543 556656665555543 44555555555
Q ss_pred CHHHHHHHhhc------CCCcEEEeCHH
Q 008235 294 AIDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 294 ~~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
........+-. +++|+||-..|
T Consensus 64 ~d~~~v~~~~~~~~~~~g~id~lv~nAg 91 (246)
T 3osu_A 64 ADADEVKAMIKEVVSQFGSLDVLVNNAG 91 (246)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 54443332211 36899998766
No 440
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=23.50 E-value=3.1e+02 Score=25.43 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=46.2
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEccc------------HHHHHHHHHHHhhhhcC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS------------QEKAAKVRSVCKPLKAF 282 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Pt------------reLa~Qi~~~~~~l~~~ 282 (573)
+.|+-+||...+|+-|+.++- .+.. .|..++++.-. .+-..+....+...
T Consensus 11 l~gk~vlVTGas~gIG~~ia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 72 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAV------RLAA---------DGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI--- 72 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHH------HHHH---------TTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH---
T ss_pred CCCCEEEEECCCChHHHHHHH------HHHH---------CCCeEEEEecccccccccccccchHHHHHHHHHHHhc---
Confidence 567888888766647775543 2332 36666665432 44444444444443
Q ss_pred CcEEEEeCCCCCHHHHHHHhhc------CCCcEEEeCHH
Q 008235 283 GIHTVSLHPGAAIDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
+-++..+............+.. +++|+||-..|
T Consensus 73 ~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg 111 (278)
T 3sx2_A 73 GSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAG 111 (278)
T ss_dssp TCCEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4455555555554444333221 36899998866
No 441
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=23.43 E-value=36 Score=31.36 Aligned_cols=21 Identities=5% Similarity=-0.135 Sum_probs=16.0
Q ss_pred HhcCCcEEEEeCCCchhHHHHH
Q 008235 214 YSSAKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 214 il~g~dvl~~A~TG~SGKTlaf 235 (573)
+..|.=++++.|.| +|||..+
T Consensus 13 ~~~G~ii~l~GpsG-sGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSG-AGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTT-SCHHHHH
T ss_pred CCCCcEEEEECCCC-CCHHHHH
Confidence 44677888899999 9999753
No 442
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=23.28 E-value=34 Score=29.98 Aligned_cols=17 Identities=12% Similarity=-0.029 Sum_probs=14.2
Q ss_pred CCcEEEEeCCCchhHHHH
Q 008235 217 AKDILETSGSSSTIVQIA 234 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (573)
|.-+++..+.| ||||..
T Consensus 3 ~~~I~i~G~~G-sGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPG-VGSTTS 19 (192)
T ss_dssp CCEEEEECCTT-SCHHHH
T ss_pred CeEEEEECCCC-CCHHHH
Confidence 56688889999 999964
No 443
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=23.24 E-value=32 Score=34.22 Aligned_cols=18 Identities=22% Similarity=0.012 Sum_probs=15.5
Q ss_pred CCcEEEEeCCCchhHHHHH
Q 008235 217 AKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (573)
.+.+++..|+| +|||...
T Consensus 117 ~~~vLl~GppG-tGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPG-TGKTLIG 134 (357)
T ss_dssp CSEEEEESSTT-SSHHHHH
T ss_pred CceEEEECCCC-CCHHHHH
Confidence 47899999999 9999753
No 444
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=23.14 E-value=39 Score=29.09 Aligned_cols=17 Identities=6% Similarity=-0.023 Sum_probs=14.4
Q ss_pred CCcEEEEeCCCchhHHHH
Q 008235 217 AKDILETSGSSSTIVQIA 234 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (573)
+.-++++.|.| ||||..
T Consensus 4 ~~~i~l~G~~G-sGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMG-AGKSTI 20 (173)
T ss_dssp CCCEEEECCTT-SCHHHH
T ss_pred CCeEEEECCCC-CCHHHH
Confidence 56788999999 999964
No 445
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=23.06 E-value=27 Score=30.76 Aligned_cols=18 Identities=6% Similarity=-0.047 Sum_probs=14.9
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.|.-++++.|.| ||||..
T Consensus 8 ~g~~i~l~G~~G-sGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPG-SGKSTI 25 (191)
T ss_dssp TTEEEEEEECTT-SCHHHH
T ss_pred CCeEEEEECCCC-CCHHHH
Confidence 466788889999 999964
No 446
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=22.98 E-value=3.1e+02 Score=25.86 Aligned_cols=83 Identities=8% Similarity=0.028 Sum_probs=45.3
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEccc------------HHHHHHHHHHHhhhhcC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS------------QEKAAKVRSVCKPLKAF 282 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Pt------------reLa~Qi~~~~~~l~~~ 282 (573)
+.|+-+||...+|+-|+.++- .+.. .|..++++.-. .+-+.+....+...
T Consensus 26 l~gk~~lVTGas~GIG~aia~------~la~---------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 87 (299)
T 3t7c_A 26 VEGKVAFITGAARGQGRSHAI------TLAR---------EGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL--- 87 (299)
T ss_dssp TTTCEEEEESTTSHHHHHHHH------HHHH---------TTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT---
T ss_pred cCCCEEEEECCCCHHHHHHHH------HHHH---------CCCEEEEEecccccccccccccCHHHHHHHHHHHHhc---
Confidence 467888888766646775543 2222 36666666432 34444444444443
Q ss_pred CcEEEEeCCCCCHHHHHHHhhc------CCCcEEEeCHH
Q 008235 283 GIHTVSLHPGAAIDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
+.++..+............+.. +++|+||-..|
T Consensus 88 ~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg 126 (299)
T 3t7c_A 88 GRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAA 126 (299)
T ss_dssp TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 4455555555554444332211 36899998765
No 447
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=22.89 E-value=1.6e+02 Score=24.38 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHhccccCCCcceEEEEecccc------HHHHHHHHHHHHHcCCC
Q 008235 508 DFIISMKNYVEILTSMARHTVSGILHSFFTKDD------AAHAGQMIEILEQCGQV 557 (573)
Q Consensus 508 d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~~~d------~~~~~~l~~~l~~~~~~ 557 (573)
++|..+..|+.++.+. .-.|..+.++.-.+ -..++.|.+.|...|..
T Consensus 66 ~~p~~~~~fl~~l~~~---~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~ 118 (148)
T 3f6r_A 66 EMQDDFLSLFEEFDRI---GLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGAT 118 (148)
T ss_dssp EECHHHHHHHTTGGGT---CCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCE
T ss_pred CCcHHHHHHHHHhhcc---CCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 4677888999887542 12333333332222 23467777888777653
No 448
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=22.88 E-value=2.8e+02 Score=26.88 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=30.8
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCc-EEEEEccc---HHHHHHHHHHHhh
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGP-FLLFLVSS---QEKAAKVRSVCKP 278 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~-~~Lil~Pt---reLa~Qi~~~~~~ 278 (573)
.|+.+++...-| .|+..++.+-. .|. .+.|+.-| .+-+.++.+.+..
T Consensus 153 ~gk~~lVlGaGG-~g~aia~~L~~---------------~Ga~~V~i~nR~~~~~~~a~~la~~~~~ 203 (315)
T 3tnl_A 153 IGKKMTICGAGG-AATAICIQAAL---------------DGVKEISIFNRKDDFYANAEKTVEKINS 203 (315)
T ss_dssp TTSEEEEECCSH-HHHHHHHHHHH---------------TTCSEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCh-HHHHHHHHHHH---------------CCCCEEEEEECCCchHHHHHHHHHHhhh
Confidence 567787776545 88887765432 254 56777777 7777776666554
No 449
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=22.77 E-value=42 Score=31.66 Aligned_cols=22 Identities=5% Similarity=-0.094 Sum_probs=18.0
Q ss_pred HHhcCCcEEEEeCCCchhHHHHH
Q 008235 213 CYSSAKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 213 ~il~g~dvl~~A~TG~SGKTlaf 235 (573)
..+.|..++++.+.| ||||...
T Consensus 44 ~~l~g~~i~l~G~~G-sGKSTl~ 65 (250)
T 3nwj_A 44 PYLNGRSMYLVGMMG-SGKTTVG 65 (250)
T ss_dssp HHHTTCCEEEECSTT-SCHHHHH
T ss_pred hhcCCCEEEEECCCC-CCHHHHH
Confidence 344589999999999 9999753
No 450
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=22.66 E-value=3.1e+02 Score=25.34 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=44.8
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHH-hhhhcCCcEEEEeCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC-KPLKAFGIHTVSLHPGA 293 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~-~~l~~~~i~~~~~~gg~ 293 (573)
+.|+-+|+...+|+-|+.++- .+.. .|..++++.-+.+-+..+...+ ... +..+..+.+..
T Consensus 19 l~~k~~lVTGas~gIG~~ia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl 80 (267)
T 1vl8_A 19 LRGRVALVTGGSRGLGFGIAQ------GLAE---------AGCSVVVASRNLEEASEAAQKLTEKY---GVETMAFRCDV 80 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHHhc---CCeEEEEEcCC
Confidence 467888888777657776553 2332 3667777766655444444444 222 33344444454
Q ss_pred CHHHHHHHhhc------CCCcEEEeCHH
Q 008235 294 AIDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 294 ~~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
........+.. +++|+||-..|
T Consensus 81 ~~~~~v~~~~~~~~~~~g~iD~lvnnAg 108 (267)
T 1vl8_A 81 SNYEEVKKLLEAVKEKFGKLDTVVNAAG 108 (267)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 44333322211 36889987765
No 451
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=22.64 E-value=1.6e+02 Score=27.75 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=46.8
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+||...+|+-|..++ ..+.. .|..++++.-+.+-+.++.+.+... +-++..+.....
T Consensus 30 l~gk~~lVTGas~GIG~aia------~~la~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~ 91 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVA------LAYAE---------AGAQVAVAARHSDALQVVADEIAGV---GGKALPIRCDVT 91 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHH------HHHHH---------TTCEEEEEESSGGGGHHHHHHHHHT---TCCCEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHH------HHHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEEcCCC
Confidence 46788888876664676544 23332 3667777776655555555555443 333344444544
Q ss_pred HHHHHHHhhc------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.......+-. +++|+||-..|
T Consensus 92 d~~~v~~~~~~~~~~~g~iD~lvnnAg 118 (276)
T 3r1i_A 92 QPDQVRGMLDQMTGELGGIDIAVCNAG 118 (276)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4433332211 36899988765
No 452
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=22.62 E-value=2.8e+02 Score=25.23 Aligned_cols=83 Identities=11% Similarity=0.142 Sum_probs=43.6
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc-cHHHHHHHHHHHhhhhcCCcEEEEeCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS-SQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P-treLa~Qi~~~~~~l~~~~i~~~~~~gg~ 293 (573)
+.|+-+++...||+-|+-++ ..+.. .|..++++.- ..+-...+.+.+... +-.+..+.+..
T Consensus 5 l~~k~vlITGasggiG~~~a------~~l~~---------~G~~V~~~~r~~~~~~~~~~~~l~~~---~~~~~~~~~D~ 66 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMA------IRFAT---------EKAKVVVNYRSKEDEANSVLEEIKKV---GGEAIAVKGDV 66 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHH------HHHHH---------TTCEEEEEESSCHHHHHHHHHHHHHT---TCEEEEEECCT
T ss_pred CCCCEEEEeCCCChHHHHHH------HHHHH---------CCCEEEEEcCCChHHHHHHHHHHHhc---CCceEEEECCC
Confidence 45677777766664566544 33333 2556666665 555444444444433 34444555555
Q ss_pred CHHHHHHHhhc------CCCcEEEeCHH
Q 008235 294 AIDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 294 ~~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
........+.. +++|+||-..|
T Consensus 67 ~~~~~~~~~~~~~~~~~g~id~li~~Ag 94 (261)
T 1gee_A 67 TVESDVINLVQSAIKEFGKLDVMINNAG 94 (261)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 43333322211 26889987755
No 453
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=22.61 E-value=50 Score=29.76 Aligned_cols=29 Identities=10% Similarity=-0.244 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHhcCCcEEEEeCCCchhHHHH
Q 008235 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 204 t~iQ~~aip~il~g~dvl~~A~TG~SGKTla 234 (573)
++.+... ..+..|.-++++.+.| ||||..
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~G-sGKsT~ 41 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSA-SGKSTL 41 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTT-SSHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCC-CCHHHH
Confidence 4555444 4455677888899999 999864
No 454
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=22.49 E-value=1.7e+02 Score=28.49 Aligned_cols=82 Identities=15% Similarity=0.047 Sum_probs=48.8
Q ss_pred CCcEEEEecCh------------hhHHHHHHHHHHCCCCeeeecC---CCHHHHHHHHHhcC---CCCCeEEEEeccccC
Q 008235 433 PLKVLYIVGKD------------SKFQNLVSTLKCKGYSISTGSN---CIVSHIKNSVEADG---RKRPAVSMIDKDHIS 494 (573)
Q Consensus 433 ~~k~lIF~~s~------------~~~~~l~~~L~~~g~~~~~~~~---~~~~~~l~~F~~~g---~~~~l~~lvd~~s~r 494 (573)
.+-+|||.|.. ..++.|...|..+|+.+..... .++.+.+++|.+.. ....+++. +.+ -
T Consensus 61 rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~~h~~~~D~~vv~--ilS-H 137 (316)
T 2fp3_A 61 RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQFFKLLTMVTSSSYVQNTECFVMV--LMT-H 137 (316)
T ss_dssp SEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEEEECSCCHHHHHHHHHHHHTSHHHHTCSCEEEE--EES-C
T ss_pred CcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEccCCCHHHHHHHHHHHHHHhhcCCCCEEEEE--Ecc-C
Confidence 46788988763 7899999999999999875322 34666888885432 23333331 222 3
Q ss_pred CCccCCCCEEEeCCCC-CCHHHHH
Q 008235 495 TAELEEYEVVIVPDFI-ISMKNYV 517 (573)
Q Consensus 495 GlDip~v~~VI~~d~P-~s~~~Yi 517 (573)
|..+.+-..|+-.|-. -++++.+
T Consensus 138 G~~~~g~g~i~g~D~~~v~l~~I~ 161 (316)
T 2fp3_A 138 GNSVEGKEKVEFRDGSVVDMQKIK 161 (316)
T ss_dssp EECCTTCCEEECTTSCEEEHHHHH
T ss_pred CCccCCCCEEEeecCcEEeHHHHH
Confidence 5554444455444433 3344333
No 455
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=22.45 E-value=39 Score=29.82 Aligned_cols=16 Identities=19% Similarity=0.059 Sum_probs=12.8
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+=+.+..|+| +|||..
T Consensus 2 ~ii~l~GpsG-aGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSG-TGKSTL 17 (186)
T ss_dssp CCEEEESSSS-SSHHHH
T ss_pred CEEEEECCCC-CCHHHH
Confidence 3467789999 999964
No 456
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=22.29 E-value=54 Score=27.58 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=20.7
Q ss_pred cEEEEeCcccccC--cchHHHHHHhcCCCCcEEEE
Q 008235 332 SLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVF 364 (573)
Q Consensus 332 ~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l~~ 364 (573)
..|+|||+|.+-. ...+..++...+.+.++++.
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~ 112 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGI 112 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEE
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 4799999998865 44455555444445554443
No 457
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=22.23 E-value=1.4e+02 Score=27.86 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=45.6
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc---cHHHHHHHHHHHhhhhcCCcEEEEeCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS---SQEKAAKVRSVCKPLKAFGIHTVSLHP 291 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P---treLa~Qi~~~~~~l~~~~i~~~~~~g 291 (573)
+.|+-+|+...+|+-|+.++- .+.. .|..++++.- ..+-+.++...+... +.++..+..
T Consensus 9 l~~k~vlVTGas~GIG~aia~------~la~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 70 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAK------TFAL---------ESVNLVLHYHQAKDSDTANKLKDELEDQ---GAKVALYQS 70 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHH------HHTT---------SSCEEEEEESCGGGHHHHHHHHHHHHTT---TCEEEEEEC
T ss_pred CCCCEEEEECCCchHHHHHHH------HHHH---------CCCEEEEEecCccCHHHHHHHHHHHHhc---CCcEEEEEC
Confidence 357888888666546765543 2332 3666666632 334444444444433 556666666
Q ss_pred CCCHHHHHHHhhc------CCCcEEEeCHH
Q 008235 292 GAAIDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 292 g~~~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
......+...+.. +++|+||-..|
T Consensus 71 Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg 100 (262)
T 3ksu_A 71 DLSNEEEVAKLFDFAEKEFGKVDIAINTVG 100 (262)
T ss_dssp CCCSHHHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 6554444433321 36788888765
No 458
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=22.22 E-value=1.1e+02 Score=28.32 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=37.6
Q ss_pred EEEcccH-HHHHHHHHHHhhh-hcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCC----CCCCCccE
Q 008235 260 LFLVSSQ-EKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA----IDVSGVSL 333 (573)
Q Consensus 260 Lil~Ptr-eLa~Qi~~~~~~l-~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~----~~l~~l~~ 333 (573)
+++.++. +|+....+.+... ...+--+..+.||. ||..+.+.|.... ++++++.+
T Consensus 4 ~~~~~~~~~l~~~aA~~i~~~i~~~~~~~l~lsgGs-------------------tp~~~~~~L~~~~~~~~~~w~~v~~ 64 (238)
T 1y89_A 4 HKIFPTADAVVKSLADDMLAYSQQGQPVHISLSGGS-------------------TPKMLFKLLASQPYANDIQWKNLHF 64 (238)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTSSCEEEEECCSH-------------------HHHHHHHHHTSTTHHHHSCGGGEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHhCCCEEEEECCCc-------------------cHHHHHHHHHhhhhccCCChhHeEE
Confidence 4556664 4777676666553 22233445555653 4556666665433 77889999
Q ss_pred EEEeCcc
Q 008235 334 LVVDRLD 340 (573)
Q Consensus 334 lViDEad 340 (573)
+-+||--
T Consensus 65 f~~DEr~ 71 (238)
T 1y89_A 65 WWGDERC 71 (238)
T ss_dssp EESEEES
T ss_pred EeceecC
Confidence 9999864
No 459
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=21.98 E-value=3.5e+02 Score=24.84 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=44.4
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+++...+|+-|+.++- .+.. .|..++++.-+.+-...+...+... +.++..+.....
T Consensus 5 l~~k~vlVTGas~gIG~~ia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 66 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATAL------RLAE---------EGTAIALLDMNREALEKAEASVREK---GVEARSYVCDVT 66 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHTT---TSCEEEEECCTT
T ss_pred cCCCEEEEeCCCcHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEecCC
Confidence 457888888776647765442 3332 2566777666555444444444332 334444444544
Q ss_pred HHHHHHHhh------cCCCcEEEeCHH
Q 008235 295 IDHQITGLR------SCEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~------~~~~~IlV~TP~ 315 (573)
.......+. .+++|+||-..|
T Consensus 67 ~~~~~~~~~~~~~~~~g~id~lv~nAg 93 (262)
T 1zem_A 67 SEEAVIGTVDSVVRDFGKIDFLFNNAG 93 (262)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 333332221 136888887755
No 460
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=21.92 E-value=36 Score=31.68 Aligned_cols=16 Identities=13% Similarity=-0.047 Sum_probs=13.6
Q ss_pred CcEEEEeCCCchhHHHH
Q 008235 218 KDILETSGSSSTIVQIA 234 (573)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (573)
+.+++..|+| +|||..
T Consensus 50 ~g~ll~G~~G-~GKTtl 65 (254)
T 1ixz_A 50 KGVLLVGPPG-VGKTHL 65 (254)
T ss_dssp SEEEEECCTT-SSHHHH
T ss_pred CeEEEECCCC-CCHHHH
Confidence 3499999999 999964
No 461
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=21.87 E-value=2.4e+02 Score=26.34 Aligned_cols=82 Identities=13% Similarity=0.050 Sum_probs=45.3
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+||...+|+-|+-++- .+.. .|..++++... +-..+....+. ..+.++..+.....
T Consensus 29 l~gk~~lVTGas~GIG~aia~------~la~---------~G~~V~~~~r~-~~~~~~~~~~~---~~~~~~~~~~~Dv~ 89 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGRAIAH------GYAR---------AGAHVLAWGRT-DGVKEVADEIA---DGGGSAEAVVADLA 89 (273)
T ss_dssp CTTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEEESS-THHHHHHHHHH---TTTCEEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHH------HHHH---------CCCEEEEEcCH-HHHHHHHHHHH---hcCCcEEEEEecCC
Confidence 467888888766646765443 3332 36677777643 33333333333 23555555555555
Q ss_pred HHHHHHHhhc-----CCCcEEEeCHH
Q 008235 295 IDHQITGLRS-----CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~-----~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-..|
T Consensus 90 d~~~v~~~~~~~~~~g~iD~lv~nAg 115 (273)
T 3uf0_A 90 DLEGAANVAEELAATRRVDVLVNNAG 115 (273)
T ss_dssp CHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHhcCCCcEEEECCC
Confidence 4444333321 36899998765
No 462
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=21.71 E-value=35 Score=29.24 Aligned_cols=15 Identities=7% Similarity=-0.046 Sum_probs=12.3
Q ss_pred cEEEEeCCCchhHHHH
Q 008235 219 DILETSGSSSTIVQIA 234 (573)
Q Consensus 219 dvl~~A~TG~SGKTla 234 (573)
-+++..+.| ||||..
T Consensus 3 ~i~l~G~~G-sGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDC-CFKSTV 17 (173)
T ss_dssp EEEEECSSS-SSHHHH
T ss_pred EEEEECCCC-CCHHHH
Confidence 367789999 999964
No 463
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=21.70 E-value=38 Score=33.38 Aligned_cols=15 Identities=7% Similarity=-0.150 Sum_probs=12.7
Q ss_pred cEEEEeCCCchhHHHH
Q 008235 219 DILETSGSSSTIVQIA 234 (573)
Q Consensus 219 dvl~~A~TG~SGKTla 234 (573)
-++++.||| ||||..
T Consensus 7 ~i~i~GptG-sGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTA-AGKTDL 21 (323)
T ss_dssp EEEEECCTT-SCHHHH
T ss_pred EEEEECCCC-CCHHHH
Confidence 578889999 999964
No 464
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=21.61 E-value=87 Score=29.10 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=28.7
Q ss_pred CccEEEEeCcccc-cC----cchHHHHHHhcCCCCcEEEEeccCC-ccHHHHHHHHhcCCc
Q 008235 330 GVSLLVVDRLDSL-SK----GDTLSLIRQSISGKPHTVVFNDCLT-YTSVPAVQNLLLGSI 384 (573)
Q Consensus 330 ~l~~lViDEad~l-l~----~~~l~~Il~~l~~~~q~l~~SAT~~-~~~~~~~~~~l~~~~ 384 (573)
+.+++||||.=+. .. ...+..|...++...-++..+.... .++.+++....+-++
T Consensus 84 ~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v 144 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQV 144 (228)
T ss_dssp CCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCc
Confidence 3679999995543 22 3334444444444444554443322 245666666655443
No 465
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=21.45 E-value=41 Score=30.07 Aligned_cols=18 Identities=11% Similarity=-0.057 Sum_probs=15.3
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.|+-+++.++.| +|||..
T Consensus 15 ~G~gvli~G~SG-aGKStl 32 (181)
T 3tqf_A 15 DKMGVLITGEAN-IGKSEL 32 (181)
T ss_dssp TTEEEEEEESSS-SSHHHH
T ss_pred CCEEEEEEcCCC-CCHHHH
Confidence 467899999999 999944
No 466
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=21.43 E-value=4.3e+02 Score=24.37 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=46.1
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-++|...||+-|+-++-. +.. .|..++++.-+.+-...+...+..... +-.+..+.+...
T Consensus 30 l~~k~vlVTGasggIG~~la~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~ 93 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARA------LVQ---------QGLKVVGCARTVGNIEELAAECKSAGY-PGTLIPYRCDLS 93 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEEECCTT
T ss_pred cCCCEEEEECCCchHHHHHHHH------HHH---------CCCEEEEEECChHHHHHHHHHHHhcCC-CceEEEEEecCC
Confidence 4678888887777567755432 332 256677777665544444444443311 223444445544
Q ss_pred HHHHHHHhhc------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-..|
T Consensus 94 ~~~~v~~~~~~~~~~~g~iD~vi~~Ag 120 (279)
T 1xg5_A 94 NEEDILSMFSAIRSQHSGVDICINNAG 120 (279)
T ss_dssp CHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 3333322211 36899988765
No 467
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=21.42 E-value=3.3e+02 Score=25.36 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=45.7
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+++...+|+-|+.++- .+.. .|..++++.-+.+-+.++...+.. .+ .+..+.....
T Consensus 27 l~~k~vlVTGas~gIG~aia~------~L~~---------~G~~V~~~~r~~~~~~~~~~~l~~---~~-~~~~~~~Dv~ 87 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQ------GLLE---------AGARVFICARDAEACADTATRLSA---YG-DCQAIPADLS 87 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEECSCHHHHHHHHHHHTT---SS-CEEECCCCTT
T ss_pred CCCCEEEEeCCCChHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHh---cC-ceEEEEeeCC
Confidence 467888888776656775543 2332 256677776665554444444432 23 4445555554
Q ss_pred HHHHHHHhhc------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-..|
T Consensus 88 d~~~v~~~~~~~~~~~g~iD~lvnnAg 114 (276)
T 2b4q_A 88 SEAGARRLAQALGELSARLDILVNNAG 114 (276)
T ss_dssp SHHHHHHHHHHHHHHCSCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4443332211 36899998765
No 468
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=21.40 E-value=3.5e+02 Score=25.06 Aligned_cols=83 Identities=10% Similarity=0.044 Sum_probs=44.9
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEccc------------HHHHHHHHHHHhhhhcC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS------------QEKAAKVRSVCKPLKAF 282 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~Pt------------reLa~Qi~~~~~~l~~~ 282 (573)
+.|+-+||...+|+-|+.++- .+.. .|..++++.-. .+-..+....+...
T Consensus 8 l~gk~vlVTGas~gIG~~ia~------~l~~---------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 69 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAV------KLAE---------EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--- 69 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT---
T ss_pred cCCCEEEEeCCCChHHHHHHH------HHHH---------CCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc---
Confidence 467888888766646765443 3332 36666666432 34444444444433
Q ss_pred CcEEEEeCCCCCHHHHHHHhhc------CCCcEEEeCHH
Q 008235 283 GIHTVSLHPGAAIDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 283 ~i~~~~~~gg~~~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
+.++..+............+.. +++|+||-..|
T Consensus 70 ~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg 108 (287)
T 3pxx_A 70 GRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAG 108 (287)
T ss_dssp TSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4455555555544443322211 36899998765
No 469
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=21.31 E-value=86 Score=29.79 Aligned_cols=65 Identities=15% Similarity=0.094 Sum_probs=37.7
Q ss_pred cEEEEEcccHHHHHHHHHHHhh-----hhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHH---cCCCCC
Q 008235 257 PFLLFLVSSQEKAAKVRSVCKP-----LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVS---LKAIDV 328 (573)
Q Consensus 257 ~~~Lil~PtreLa~Qi~~~~~~-----l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~---~~~~~l 328 (573)
|.++|.-...+|+..+.+.+.. +...+.-+..+.||. ||..+++.|. ...+++
T Consensus 5 ~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~LsgGs-------------------tP~~ly~~L~~~~~~~idw 65 (266)
T 3eb9_A 5 PTISVHATPQELSAAGCRKIVEIIEASGSQQWPLSIALAGGS-------------------TPKMTYARLHDEHLNLLRE 65 (266)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHCGGGCSEEEEECCSH-------------------HHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCC-------------------CHHHHHHHHHHHhhcCCCh
Confidence 4444444445566666655532 233355556666664 3444444443 235678
Q ss_pred -CCccEEEEeCcc
Q 008235 329 -SGVSLLVVDRLD 340 (573)
Q Consensus 329 -~~l~~lViDEad 340 (573)
+++.++-+||--
T Consensus 66 ~~~v~~f~~DEr~ 78 (266)
T 3eb9_A 66 KRALRFFMGDERM 78 (266)
T ss_dssp SCCEEEEESEEES
T ss_pred HHcEEEEeeeeec
Confidence 999999999953
No 470
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=21.27 E-value=3.1e+02 Score=21.66 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=49.5
Q ss_pred CCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhhcCCCcEEEeCHHHHHHHHHcCCCCCCCccEE
Q 008235 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLL 334 (573)
Q Consensus 255 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~~~~~~IlV~TP~rL~~~l~~~~~~l~~l~~l 334 (573)
...++||+-+.......+...+... |+.+.. .+.+....+..+... ..+++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~---g~~v~~---------------------~~~~~~~a~~~~~~~-----~~dli 58 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESL---GYDVLG---------------------VFDNGEEAVRCAPDL-----RPDIA 58 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHH---TCEEEE---------------------EESSHHHHHHHHHHH-----CCSEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHC---CCeeEE---------------------EECCHHHHHHHHHhC-----CCCEE
Confidence 4568899988888777777766654 333321 133444445555432 25678
Q ss_pred EEeCccc-ccC-cchHHHHHHhcCCCCcEEEEeccCCc
Q 008235 335 VVDRLDS-LSK-GDTLSLIRQSISGKPHTVVFNDCLTY 370 (573)
Q Consensus 335 ViDEad~-ll~-~~~l~~Il~~l~~~~q~l~~SAT~~~ 370 (573)
|+|-.-- -.+ .+.+..+... +...++++|+....
T Consensus 59 i~d~~~~~~~~g~~~~~~l~~~--~~~~ii~ls~~~~~ 94 (140)
T 3cg0_A 59 LVDIMLCGALDGVETAARLAAG--CNLPIIFITSSQDV 94 (140)
T ss_dssp EEESSCCSSSCHHHHHHHHHHH--SCCCEEEEECCCCH
T ss_pred EEecCCCCCCCHHHHHHHHHhC--CCCCEEEEecCCCH
Confidence 8884321 122 4445555554 66789999887553
No 471
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=21.22 E-value=4.5e+02 Score=24.28 Aligned_cols=28 Identities=14% Similarity=0.123 Sum_probs=23.7
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCCe
Q 008235 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (573)
Q Consensus 433 ~~k~lIF~~s~~~~~~l~~~L~~~g~~~ 460 (573)
+.+.-|||.+...|.-+...|...|+.+
T Consensus 196 ~~~~ai~~~~d~~A~g~~~al~~~g~~v 223 (301)
T 3miz_A 196 DRPTAIMSGNDEMAIQIYIAAMALGLRI 223 (301)
T ss_dssp TCCSEEEESSHHHHHHHHHHHHTTTCCH
T ss_pred CCCcEEEECCHHHHHHHHHHHHHcCCCC
Confidence 3578899999999999999999988763
No 472
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=21.22 E-value=42 Score=30.22 Aligned_cols=22 Identities=5% Similarity=-0.123 Sum_probs=15.9
Q ss_pred HHhcCCcEEEEeCCCchhHHHHH
Q 008235 213 CYSSAKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 213 ~il~g~dvl~~A~TG~SGKTlaf 235 (573)
.+..|.=+.++.|+| +|||..+
T Consensus 16 ~i~~Gei~~l~GpnG-sGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSA-VGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTT-SSHHHHH
T ss_pred CCCCCCEEEEECCCC-CCHHHHH
Confidence 566777788889999 9999653
No 473
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=21.18 E-value=40 Score=29.12 Aligned_cols=14 Identities=14% Similarity=-0.050 Sum_probs=11.9
Q ss_pred EEEEeCCCchhHHHH
Q 008235 220 ILETSGSSSTIVQIA 234 (573)
Q Consensus 220 vl~~A~TG~SGKTla 234 (573)
++++.+.| ||||..
T Consensus 5 I~i~G~~G-sGKST~ 18 (181)
T 1ly1_A 5 ILTIGCPG-SGKSTW 18 (181)
T ss_dssp EEEECCTT-SSHHHH
T ss_pred EEEecCCC-CCHHHH
Confidence 67789999 999964
No 474
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=21.01 E-value=1.9e+02 Score=26.70 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=44.7
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE-cccHHHHHHHHHHHhhhhcCCcEEEEeCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL-VSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil-~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~ 293 (573)
+.|+-+|+...+|+-|+.++- .+.. .|..++++ ....+.+.+....+... +-++..+....
T Consensus 6 l~~k~vlVTGas~GIG~aia~------~la~---------~G~~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv 67 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAI------RFAQ---------EGANVVLTYNGAAEGAATAVAEIEKL---GRSALAIKADL 67 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEEECSSCHHHHHHHHHHHTT---TSCCEEEECCT
T ss_pred CCCCEEEEECCCchHHHHHHH------HHHH---------CCCEEEEEcCCCHHHHHHHHHHHHhc---CCceEEEEcCC
Confidence 467888888766546765443 3332 36667666 44445555555555443 33344444554
Q ss_pred CHHHHHHHhhc------CCCcEEEeCHH
Q 008235 294 AIDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 294 ~~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
........+-. +++|+||-..|
T Consensus 68 ~~~~~v~~~~~~~~~~~g~id~lv~nAg 95 (259)
T 3edm_A 68 TNAAEVEAAISAAADKFGEIHGLVHVAG 95 (259)
T ss_dssp TCHHHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 44433332211 35788887755
No 475
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=20.84 E-value=2.6e+02 Score=25.75 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=48.7
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+|+...+|+-|+.++- .+.. .|..++++.-+.+-+.++...+..... -++..+.....
T Consensus 8 l~~k~vlVTGas~gIG~aia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~ 70 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIAT------VFAR---------AGANVAVAGRSTADIDACVADLDQLGS--GKVIGVQTDVS 70 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHTTSS--SCEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhhCC--CcEEEEEcCCC
Confidence 467878877655546665443 2332 366788888777776666666655421 34444445554
Q ss_pred HHHHHHHhh------cCCCcEEEeCHH
Q 008235 295 IDHQITGLR------SCEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~------~~~~~IlV~TP~ 315 (573)
.......+. .+++|+||-..|
T Consensus 71 ~~~~v~~~~~~~~~~~g~id~lvnnAg 97 (262)
T 3pk0_A 71 DRAQCDALAGRAVEEFGGIDVVCANAG 97 (262)
T ss_dssp SHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 444333221 136899998766
No 476
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=20.80 E-value=1.8e+02 Score=26.85 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=47.6
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEE-cccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL-VSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil-~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
.|+-+|+...+|+-|+.++ ..+.. .|..++++ ..+.+-+.++...+... +.++..+.....
T Consensus 3 ~~k~vlVTGas~gIG~aia------~~l~~---------~G~~vv~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~ 64 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAA------IRLAE---------NGYNIVINYARSKKAALETAEEIEKL---GVKVLVVKANVG 64 (258)
T ss_dssp CCCEEEESSCSSHHHHHHH------HHHHH---------TTCEEEEEESSCHHHHHHHHHHHHTT---TCCEEEEECCTT
T ss_pred CCCEEEEecCCchHHHHHH------HHHHH---------CCCEEEEEcCCCHHHHHHHHHHHHhc---CCcEEEEEcCCC
Confidence 5677777765554666544 33333 36677775 67777666666666544 445555555555
Q ss_pred HHHHHHHhhc------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-..|
T Consensus 65 ~~~~v~~~~~~~~~~~g~id~lv~nAg 91 (258)
T 3oid_A 65 QPAKIKEMFQQIDETFGRLDVFVNNAA 91 (258)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4444332211 36899998765
No 477
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=20.70 E-value=1e+02 Score=28.14 Aligned_cols=19 Identities=21% Similarity=0.113 Sum_probs=15.3
Q ss_pred cCCcEEEEeCCCchhHHHHH
Q 008235 216 SAKDILETSGSSSTIVQIAW 235 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf 235 (573)
.|.-+.+..|.| +|||...
T Consensus 29 ~G~~~~l~GpnG-sGKSTLl 47 (251)
T 2ehv_A 29 EGTTVLLTGGTG-TGKTTFA 47 (251)
T ss_dssp TTCEEEEECCTT-SSHHHHH
T ss_pred CCcEEEEEeCCC-CCHHHHH
Confidence 467788889999 9999654
No 478
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=20.69 E-value=27 Score=34.18 Aligned_cols=17 Identities=18% Similarity=0.006 Sum_probs=14.7
Q ss_pred CCcEEEEeCCCchhHHHH
Q 008235 217 AKDILETSGSSSTIVQIA 234 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (573)
+..+++..|+| +|||..
T Consensus 45 ~~~vLl~G~~G-tGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRG-TGKSTA 61 (350)
T ss_dssp GCCEEEECCGG-GCTTHH
T ss_pred CceEEEECCCC-ccHHHH
Confidence 35799999999 999965
No 479
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=20.65 E-value=45 Score=29.90 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=13.3
Q ss_pred CccEEEEeCcccccC
Q 008235 330 GVSLLVVDRLDSLSK 344 (573)
Q Consensus 330 ~l~~lViDEad~ll~ 344 (573)
+.++|||||...+++
T Consensus 105 ~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 105 NFALVVVDSITAHYR 119 (220)
T ss_dssp TEEEEEEECCCCCTT
T ss_pred CCCEEEEcCcHHHhh
Confidence 588999999998876
No 480
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=20.55 E-value=3.2e+02 Score=27.43 Aligned_cols=11 Identities=18% Similarity=0.111 Sum_probs=8.8
Q ss_pred EEEEeCccccc
Q 008235 333 LLVVDRLDSLS 343 (573)
Q Consensus 333 ~lViDEad~ll 343 (573)
+||+||+|..+
T Consensus 197 ~livD~a~~~~ 207 (409)
T 3jzl_A 197 IVFVDNCYGEF 207 (409)
T ss_dssp EEEEECTTCTT
T ss_pred EEEEeCCcccc
Confidence 88999998543
No 481
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=20.46 E-value=2.8e+02 Score=25.19 Aligned_cols=82 Identities=22% Similarity=0.241 Sum_probs=42.2
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc-cHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS-SQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P-treLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
.|+-+++...||+-|+.++ ..+.. .|..++++.- ..+-..++.+.+... +-++..+.....
T Consensus 3 ~~k~vlVTGas~giG~~ia------~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 64 (246)
T 2uvd_A 3 KGKVALVTGASRGIGRAIA------IDLAK---------QGANVVVNYAGNEQKANEVVDEIKKL---GSDAIAVRADVA 64 (246)
T ss_dssp TTCEEEETTCSSHHHHHHH------HHHHH---------TTCEEEEEESSCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCEEEEECCCcHHHHHHH------HHHHH---------CCCEEEEEeCCCHHHHHHHHHHHHhc---CCcEEEEEcCCC
Confidence 5676777666654666544 33332 2556666655 545444444444433 333444444444
Q ss_pred HHHHHHHhhc------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-..|
T Consensus 65 ~~~~~~~~~~~~~~~~g~id~lv~nAg 91 (246)
T 2uvd_A 65 NAEDVTNMVKQTVDVFGQVDILVNNAG 91 (246)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3333322211 36888887765
No 482
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=20.45 E-value=45 Score=29.78 Aligned_cols=18 Identities=6% Similarity=0.004 Sum_probs=15.0
Q ss_pred cCCcEEEEeCCCchhHHHH
Q 008235 216 SAKDILETSGSSSTIVQIA 234 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (573)
.|.-++++.|.| ||||..
T Consensus 28 ~g~~i~l~G~~G-sGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSG-SGKTTI 45 (200)
T ss_dssp CCCEEEEECCTT-SCHHHH
T ss_pred CCcEEEEECCCC-CCHHHH
Confidence 467788899999 999964
No 483
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=20.43 E-value=2.5e+02 Score=26.30 Aligned_cols=83 Identities=18% Similarity=0.076 Sum_probs=45.2
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEc-ccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV-SSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~-PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
.|+-+||...+|+-|+.++- .+.. .|..++++. ...+-+.++...+... +.++..+.....
T Consensus 28 ~~k~~lVTGas~GIG~aia~------~la~---------~G~~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~ 89 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGLGIAR------ALAA---------SGFDIAITGIGDAEGVAPVIAELSGL---GARVIFLRADLA 89 (280)
T ss_dssp CCCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEEESCCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCEEEEecCCCHHHHHHHH------HHHH---------CCCeEEEEeCCCHHHHHHHHHHHHhc---CCcEEEEEecCC
Confidence 46778887666646765543 2332 366777776 4555555555555443 444444444444
Q ss_pred HHHHH----HHhhc--CCCcEEEeCHHH
Q 008235 295 IDHQI----TGLRS--CEPEFLVSTPER 316 (573)
Q Consensus 295 ~~~~~----~~l~~--~~~~IlV~TP~r 316 (573)
..... ..+.. +++|+||-..|.
T Consensus 90 d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 90 DLSSHQATVDAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp SGGGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 33222 22211 368999988764
No 484
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=20.40 E-value=3.9e+02 Score=24.79 Aligned_cols=83 Identities=12% Similarity=0.039 Sum_probs=46.0
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc-------------cHHHHHHHHHHHhhhhc
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS-------------SQEKAAKVRSVCKPLKA 281 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P-------------treLa~Qi~~~~~~l~~ 281 (573)
+.|+-+|+...+|+-|..++- .+.. .|..++++.- +.+-..++...+...
T Consensus 13 l~gk~~lVTGas~gIG~a~a~------~la~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 75 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAV------RLAA---------EGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ-- 75 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHH------HHHH---------TTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT--
T ss_pred cCCCEEEEECCCcHHHHHHHH------HHHH---------CCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc--
Confidence 567888888766646765443 3332 3666666643 444444555544443
Q ss_pred CCcEEEEeCCCCCHHHHHHHhhc------CCCcEEEeCHH
Q 008235 282 FGIHTVSLHPGAAIDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 282 ~~i~~~~~~gg~~~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
+.++..+............+-. +++|+||-..|
T Consensus 76 -~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg 114 (280)
T 3pgx_A 76 -GRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAG 114 (280)
T ss_dssp -TCCEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred -CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4455555555554444333211 36899998765
No 485
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=20.39 E-value=4.9e+02 Score=23.73 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=27.8
Q ss_pred HHHHHHhccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCC
Q 008235 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (573)
Q Consensus 419 ~~L~~~~~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~ 459 (573)
+.+..++..+ +.+.-|||.+...|..+...|...|+.
T Consensus 177 ~~~~~~l~~~----~~~~ai~~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 177 DAAKKLMKLK----NTPKALFCNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp HHHHHHTTSS----SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCC----CCCcEEEEcCCHHHHHHHHHHHHcCCC
Confidence 4455555543 357789999999999999999998875
No 486
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=20.34 E-value=6.1e+02 Score=27.13 Aligned_cols=57 Identities=7% Similarity=-0.088 Sum_probs=40.6
Q ss_pred EEEcCChhHHHHHHHHHHHHHh-ccCCCCCCCcEEEEecChhhHHHHHHHHHHCCCCeee
Q 008235 404 VNVCASDEEKILKGIQVLDHAY-GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIST 462 (573)
Q Consensus 404 ~~~~~~~~~k~~~l~~~L~~~~-~~~~~~~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~ 462 (573)
+..+.+...-...+...+..+. ..+. +...+-|.|.+...+..+...|...|+++..
T Consensus 314 ~~~~~~~~~e~~~va~~I~~l~~~~g~--~~~diaVL~r~~~~~~~l~~~L~~~gIp~~~ 371 (673)
T 1uaa_A 314 VLSANNEEHEAERVTGELIAHHFVNKT--QYKDYAILYRGNHQSRVFEKFLMQNRIPYKI 371 (673)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHHHCC--CTTTEEEEESSSGGGTTHHHHHHHTTCCEEE
T ss_pred EEecCCHHHHHHHHHHHHHHHHhccCC--CccCEEEEEechhhHHHHHHHHHHCCCCEEE
Confidence 3445545555666666676665 2221 2567889999999999999999999999874
No 487
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2
Probab=20.30 E-value=4.5e+02 Score=23.49 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=42.6
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHH
Q 008235 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID 296 (573)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~ 296 (573)
++-+++...||+-|+.++-. +....... ......++++.-+.+-..++...+.. .+.++..+.+.....
T Consensus 2 ~k~vlITGasggiG~~la~~------l~~~G~~~--~~~~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~ 70 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALE------FARAARHH--PDFEPVLVLSSRTAADLEKISLECRA---EGALTDTITADISDM 70 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHH------HHHHTTTC--TTCCEEEEEEESCHHHHHHHHHHHHT---TTCEEEEEECCTTSH
T ss_pred CCEEEEECCCChHHHHHHHH------HHHhcCcc--cccceEEEEEeCCHHHHHHHHHHHHc---cCCeeeEEEecCCCH
Confidence 45577777776567765532 22221000 00011566666655544444444432 244555555555444
Q ss_pred HHHHHhhc------CCCcEEEeCHH
Q 008235 297 HQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 297 ~~~~~l~~------~~~~IlV~TP~ 315 (573)
.....+.. +++|+||-..|
T Consensus 71 ~~v~~~~~~~~~~~g~id~li~~Ag 95 (244)
T 2bd0_A 71 ADVRRLTTHIVERYGHIDCLVNNAG 95 (244)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 33332221 35888887765
No 488
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=20.27 E-value=72 Score=30.29 Aligned_cols=52 Identities=4% Similarity=0.012 Sum_probs=28.2
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhh
Q 008235 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (573)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 279 (573)
.|.-+++...+| +||| ++.+-.+..-.. +|-.++|++-. |=..|+.+.+..+
T Consensus 20 ~gs~~li~g~p~-~~~~-~l~~qfl~~g~~---------~Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 20 HSLILIHEEDAS-SRGK-DILFYILSRKLK---------SDNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp TCEEEEEECSGG-GCHH-HHHHHHHHHHHH---------TTCEEEEEECS-SCHHHHHHHHHHT
T ss_pred CCcEEEEEeCCC-ccHH-HHHHHHHHHHHH---------CCCcEEEEEEe-CCHHHHHHHHHHc
Confidence 346677776777 6666 444444433332 35567777643 2334455555554
No 489
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=20.27 E-value=3.7e+02 Score=24.47 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=44.8
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+|+...+|+-|+.++ ..+.. .|..++++.-+.+-+.+....+ +-++..+.....
T Consensus 4 l~gk~vlVTGas~gIG~a~a------~~l~~---------~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dv~ 62 (247)
T 3rwb_A 4 LAGKTALVTGAAQGIGKAIA------ARLAA---------DGATVIVSDINAEGAKAAAASI------GKKARAIAADIS 62 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHH------HHHHH---------TTCEEEEECSCHHHHHHHHHHH------CTTEEECCCCTT
T ss_pred cCCCEEEEECCCCHHHHHHH------HHHHH---------CCCEEEEEeCCHHHHHHHHHHh------CCceEEEEcCCC
Confidence 46788888866654676544 33332 3667777777766555444433 233444445554
Q ss_pred HHHHHHHhhc------CCCcEEEeCHH
Q 008235 295 IDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
.......+.. +++|+||-..|
T Consensus 63 ~~~~v~~~~~~~~~~~g~id~lv~nAg 89 (247)
T 3rwb_A 63 DPGSVKALFAEIQALTGGIDILVNNAS 89 (247)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence 4433332211 36899998765
No 490
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=20.27 E-value=4e+02 Score=24.67 Aligned_cols=83 Identities=8% Similarity=-0.000 Sum_probs=45.4
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcc-------------cHHHHHHHHHHHhhhhc
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS-------------SQEKAAKVRSVCKPLKA 281 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~P-------------treLa~Qi~~~~~~l~~ 281 (573)
+.|+-+||...+|+-|+.++-. +.. .|..++++.- +.+-+.+....+...
T Consensus 9 l~~k~~lVTGas~GIG~a~a~~------la~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 71 (277)
T 3tsc_A 9 LEGRVAFITGAARGQGRAHAVR------MAA---------EGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA-- 71 (277)
T ss_dssp TTTCEEEEESTTSHHHHHHHHH------HHH---------TTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT--
T ss_pred cCCCEEEEECCccHHHHHHHHH------HHH---------cCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc--
Confidence 5678888887665467755432 222 3666666542 444444444444433
Q ss_pred CCcEEEEeCCCCCHHHHHHHhhc------CCCcEEEeCHH
Q 008235 282 FGIHTVSLHPGAAIDHQITGLRS------CEPEFLVSTPE 315 (573)
Q Consensus 282 ~~i~~~~~~gg~~~~~~~~~l~~------~~~~IlV~TP~ 315 (573)
+.++..+............+-. +++|+||-..|
T Consensus 72 -~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg 110 (277)
T 3tsc_A 72 -NRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAG 110 (277)
T ss_dssp -TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred -CCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4445555555554444333221 36899998765
No 491
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=20.20 E-value=2.7e+02 Score=26.05 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=44.7
Q ss_pred hcCCcEEEEeCCCchhHHHHHHHHHHHHHHhchhccCCCCCCcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCC
Q 008235 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (573)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~ 294 (573)
+.|+-+++...||+-|..++- .+.. .|..++++.-+.+-..++...+... +.++..+.+...
T Consensus 42 l~~k~vlITGasggIG~~la~------~L~~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~ 103 (285)
T 2c07_A 42 GENKVALVTGAGRGIGREIAK------MLAK---------SVSHVICISRTQKSCDSVVDEIKSF---GYESSGYAGDVS 103 (285)
T ss_dssp CSSCEEEEESTTSHHHHHHHH------HHTT---------TSSEEEEEESSHHHHHHHHHHHHTT---TCCEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHH------HHHH---------cCCEEEEEcCCHHHHHHHHHHHHhc---CCceeEEECCCC
Confidence 457888888777756776553 2322 2556666554444444444444332 444444555544
Q ss_pred HHHHHHHhh------cCCCcEEEeCHH
Q 008235 295 IDHQITGLR------SCEPEFLVSTPE 315 (573)
Q Consensus 295 ~~~~~~~l~------~~~~~IlV~TP~ 315 (573)
.......+. .+++|+||...|
T Consensus 104 d~~~v~~~~~~~~~~~~~id~li~~Ag 130 (285)
T 2c07_A 104 KKEEISEVINKILTEHKNVDILVNNAG 130 (285)
T ss_dssp CHHHHHHHHHHHHHHCSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 444333322 136889888765
No 492
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=20.20 E-value=4.5e+02 Score=23.16 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=27.6
Q ss_pred CCCCCCHHHHHHHHhccccCCCcceEEEEec----cc-c--HHHHHHHHHHHHHcCCCC
Q 008235 507 PDFIISMKNYVEILTSMARHTVSGILHSFFT----KD-D--AAHAGQMIEILEQCGQVV 558 (573)
Q Consensus 507 ~d~P~s~~~YiqR~GR~gR~g~~G~~i~~~~----~~-d--~~~~~~l~~~l~~~~~~v 558 (573)
-++|.+...|+..+.......-.|..+.++. .. + -...+.|.+.|+..|..+
T Consensus 80 G~~p~~~~~fl~~L~~~~~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~ 138 (191)
T 1bvy_F 80 GHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAEN 138 (191)
T ss_dssp TBCCTTTHHHHHHHHTCCSSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCC
T ss_pred CCcCHHHHHHHHHHHhccchhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeE
Confidence 3577788888887743221112233333332 11 1 335677777777766543
No 493
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=20.11 E-value=46 Score=35.88 Aligned_cols=15 Identities=20% Similarity=0.091 Sum_probs=13.8
Q ss_pred cEEEEeCCCchhHHHH
Q 008235 219 DILETSGSSSTIVQIA 234 (573)
Q Consensus 219 dvl~~A~TG~SGKTla 234 (573)
++++..|+| +|||..
T Consensus 329 ~vLL~GppG-tGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPG-TAKSQM 343 (595)
T ss_dssp CEEEEESSC-CTHHHH
T ss_pred ceEEECCCc-hHHHHH
Confidence 899999999 999964
No 494
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=20.01 E-value=92 Score=34.54 Aligned_cols=55 Identities=20% Similarity=0.126 Sum_probs=38.2
Q ss_pred CcEEEEEcccHHHHHHHHHHHhhhhcCCcEEEEeCCCCCHHHHHHHhh-c-CCCcEEEeCH
Q 008235 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLR-S-CEPEFLVSTP 314 (573)
Q Consensus 256 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~i~~~~~~gg~~~~~~~~~l~-~-~~~~IlV~TP 314 (573)
+..+||.|.|++-+..+...+... |+...+++|+.... +...+. . ....|+|||.
T Consensus 474 gqpVLVFt~S~e~sE~Ls~~L~~~---Gi~~~vLhgkq~~r-E~~ii~~ag~~g~VtVATd 530 (822)
T 3jux_A 474 GQPVLVGTTSIEKSELLSSMLKKK---GIPHQVLNAKYHEK-EAEIVAKAGQKGMVTIATN 530 (822)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTT---TCCCEEECSCHHHH-HHHHHHHHHSTTCEEEEET
T ss_pred CCCEEEEECCHHHHHHHHHHHHHC---CCCEEEeeCCchHH-HHHHHHhCCCCCeEEEEcc
Confidence 456999999999998888877654 89999999983322 211111 1 1347999994
Done!