Your job contains 1 sequence.
>008236
MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI
PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH
QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI
KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID
TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS
NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN
GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS
VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE
TYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTKEHESLRKVKAVNSDPSCGERTK
NKNFDDVSNDSSYSQLSSDEIIDSFYTREAKQI
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008236
(573 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2012100 - symbol:AHG2 "ABA-HYPERSENSITIVE GERM... 1529 7.0e-157 1
TAIR|locus:2094533 - symbol:AT3G25430 species:3702 "Arabi... 264 8.2e-22 2
ZFIN|ZDB-GENE-040426-880 - symbol:parn "poly(A)-specific ... 205 5.9e-18 3
UNIPROTKB|F1NEI8 - symbol:F1NEI8 "Uncharacterized protein... 188 5.9e-17 3
UNIPROTKB|E1BVT8 - symbol:PNLDC1 "Uncharacterized protein... 213 4.2e-16 2
UNIPROTKB|P69341 - symbol:PARN "Poly(A)-specific ribonucl... 192 1.2e-15 3
UNIPROTKB|E2QZA0 - symbol:PARN "Uncharacterized protein" ... 183 1.3e-15 3
UNIPROTKB|F6XU41 - symbol:PARN "Uncharacterized protein" ... 187 1.7e-15 3
RGD|1565449 - symbol:Parn "poly(A)-specific ribonuclease"... 191 2.9e-15 3
UNIPROTKB|O95453 - symbol:PARN "Poly(A)-specific ribonucl... 186 5.7e-15 3
UNIPROTKB|F1SB65 - symbol:PNLDC1 "Uncharacterized protein... 192 7.0e-15 2
UNIPROTKB|F1MX01 - symbol:PNLDC1 "Uncharacterized protein... 188 9.6e-15 2
UNIPROTKB|E2R0L8 - symbol:PNLDC1 "Uncharacterized protein... 186 1.6e-14 2
MGI|MGI:1921358 - symbol:Parn "poly(A)-specific ribonucle... 182 2.9e-14 3
UNIPROTKB|Q8NA58 - symbol:PNLDC1 "Poly(A)-specific ribonu... 179 6.1e-13 2
UNIPROTKB|E9PU60 - symbol:Pnldc1 "Protein Pnldc1" species... 169 1.2e-12 2
UNIPROTKB|B4DSB0 - symbol:PARN "cDNA FLJ58618, highly sim... 184 6.1e-12 2
POMBASE|SPBC29A10.09c - symbol:SPBC29A10.09c "CAF1 family... 158 9.4e-12 2
UNIPROTKB|H3BRK1 - symbol:PARN "Poly(A)-specific ribonucl... 177 2.6e-11 1
WB|WBGene00010734 - symbol:K10C8.1 species:6239 "Caenorha... 163 4.4e-09 2
UNIPROTKB|F1RLR7 - symbol:PARN "Uncharacterized protein" ... 120 2.9e-05 2
ZFIN|ZDB-GENE-070912-533 - symbol:toe1 "target of EGR1, m... 85 0.00011 3
>TAIR|locus:2012100 [details] [associations]
symbol:AHG2 "ABA-HYPERSENSITIVE GERMINATION 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0009451 "RNA
modification" evidence=ISS] [GO:0006970 "response to osmotic
stress" evidence=IMP] [GO:0009651 "response to salt stress"
evidence=IMP] [GO:0009737 "response to abscisic acid stimulus"
evidence=IMP] [GO:0009751 "response to salicylic acid stimulus"
evidence=IMP] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0005634
GO:GO:0005737 GO:GO:0006952 GO:GO:0006950 GO:GO:0046872
GO:GO:0006397 GO:GO:0009751 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0004535 EMBL:AC002304 KO:K01148 EMBL:AB194966
EMBL:AB223028 EMBL:AB223029 EMBL:AB223027 IPI:IPI00525311
IPI:IPI00846849 IPI:IPI00929965 RefSeq:NP_001077725.4
RefSeq:NP_175983.5 UniGene:At.49981 ProteinModelPortal:Q9LG26
SMR:Q9LG26 STRING:Q9LG26 PRIDE:Q9LG26 EnsemblPlants:AT1G55870.1
GeneID:842037 KEGG:ath:AT1G55870 TAIR:At1g55870 eggNOG:NOG145331
HOGENOM:HOG000078691 InParanoid:Q9LG26 OMA:GVCPFRW PhylomeDB:Q9LG26
ProtClustDB:CLSN2927348 Genevestigator:Q9LG26 GermOnline:AT1G55870
Uniprot:Q9LG26
Length = 689
Score = 1529 (543.3 bits), Expect = 7.0e-157, P = 7.0e-157
Identities = 296/524 (56%), Positives = 389/524 (74%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
MDFLAKYQFDFN CIHEG+SYLSR +E++A K + + ++ +DS +E++ L +
Sbjct: 150 MDFLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELK---LVRL 206
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D+LFA RM+ L+EW GLL + SE N S Q ET+F MRPA+SL GFTSH
Sbjct: 207 ADVLFAARMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSH 266
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL ++ V+RKHF DL Y+ + ++S S++++VY +S+SDK+ LMKE KDE+K AE I
Sbjct: 267 QLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVYTDSDSDKENLMKEAKDERKRLAERKI 326
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+++IGFR VIDLL+SEKKLIVGHNCFLDIAH+YSKF GPLP TAE+F++S+N +FP+I+D
Sbjct: 327 QSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVD 386
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TKILLN N +L QRMKKSSTSLS AFS LCPQI S+S+ LQ V ++VE+D++R S
Sbjct: 387 TKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCS 446
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
NWN+G KHEAGYDAFMTGC+FAQAC+HLG DFKQ S ++ A NEKL +++N LYLSWT
Sbjct: 447 NWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWTR 506
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
G+II+L TG+ S A N R + K +E IV++W FP LKA I+ECI K +G S
Sbjct: 507 GDIIDLRTGH----SNADNWRVS---KFKYENIVLIWNFPRKLKARGIKECICKAFGSAS 559
Query: 421 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 480
V SVYHVD++AVFV F +E+V FL LK L+ ++ P+SVLHPL+K+LEGGNT AA YE
Sbjct: 560 VTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYE 619
Query: 481 TYKEICSSTVSKVLFADQAKAVGIKWKTKL-VESSDKTKEHESL 523
YKEICSS VS+V+F+DQA+ VG+K +T+ + +T+E ++
Sbjct: 620 AYKEICSSHVSEVMFSDQAETVGVKSRTRPNAQCETETREENTV 663
>TAIR|locus:2094533 [details] [associations]
symbol:AT3G25430 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0005737
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0006397
GO:GO:0003723 GO:GO:0090305 SUPFAM:SSF53098 EMBL:AB025639
GO:GO:0004535 HSSP:O95453 EMBL:AY062664 EMBL:BT008385
IPI:IPI00518969 RefSeq:NP_189170.1 UniGene:At.27268
ProteinModelPortal:Q8W4C3 SMR:Q8W4C3 PRIDE:Q8W4C3
EnsemblPlants:AT3G25430.1 GeneID:822127 KEGG:ath:AT3G25430
TAIR:At3g25430 eggNOG:NOG322908 HOGENOM:HOG000084601
InParanoid:Q8W4C3 KO:K01148 OMA:NHLMKEI PhylomeDB:Q8W4C3
ProtClustDB:CLSN2915430 Genevestigator:Q8W4C3 Uniprot:Q8W4C3
Length = 618
Score = 264 (98.0 bits), Expect = 8.2e-22, Sum P(2) = 8.2e-22
Identities = 77/277 (27%), Positives = 144/277 (51%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
+A+ FDFN CI+EG+SYLSR QE A K ++ E+ L ++ T + D
Sbjct: 139 MAREGFDFNICIYEGISYLSRAQES-ASKFLS---ENPILADSVTVSSSPAT----VADT 190
Query: 64 LFAERMKDRLSEWLGGLLRNRDEGSEV-QPSFNDSKQQFE--TIFFKMRPAISLNGFTSH 120
+F R++ R+ W + D GS+ S ++ + + R ++++ +
Sbjct: 191 VFVGRIRSRVKNWRQSCI---DSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSER 247
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q+ LI ++ + D+ L V+ ++ +Q V V++ S+ DK + +E+KD +K +
Sbjct: 248 QVQLILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEK-EENRR 306
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
++ GFR V+D +SS +K +V N D I++KF GPLP ++F SS++ FP+++
Sbjct: 307 VR---GFREVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPNVV 363
Query: 240 DTKILLNSNSILQQ--RMKKSSTSLSKAFSVLCPQIA 274
D + S L + + +SL++ F+ + ++A
Sbjct: 364 DLSQFMKEISPLSNISNLPAAMSSLNRFFAPVDVEVA 400
Score = 65 (27.9 bits), Expect = 8.2e-22, Sum P(2) = 8.2e-22
Identities = 31/138 (22%), Positives = 61/138 (44%)
Query: 387 KILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV--ISVYHVDETAVFVQFSRAEMVSK 444
++ E +V +WG + A ++ + K + P V ++D ++ + F +
Sbjct: 479 RVSSENLVFIWGLGKKMTAAKLKNVLQKSH-PVFAREFDVKYIDRSSAILVFWESGPSET 537
Query: 445 FLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGI 504
FL + ++ + S+ +A+ L G A YETYK C + AD A+++
Sbjct: 538 FLSAVNNEEQLDG--SLREMVAEGLRG-----AGYETYKRACRLGFWE---ADLAESLD- 586
Query: 505 KWKTKLVESSDKTKEHES 522
K +ESSD + ++
Sbjct: 587 ----KALESSDTDPDSDT 600
>ZFIN|ZDB-GENE-040426-880 [details] [associations]
symbol:parn "poly(A)-specific ribonuclease
(deadenylation nuclease)" species:7955 "Danio rerio" [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR001374 InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR012677 InterPro:IPR014789 Pfam:PF01424 Pfam:PF04857
Pfam:PF08675 PROSITE:PS51061 ZFIN:ZDB-GENE-040426-880 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0046872 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0006402
GO:GO:0004535 KO:K01148 eggNOG:NOG145331 CTD:5073
HOGENOM:HOG000007285 HOVERGEN:HBG053512 EMBL:AY398393 EMBL:BC050496
IPI:IPI00501510 IPI:IPI00554410 RefSeq:NP_957382.1 UniGene:Dr.78689
ProteinModelPortal:Q7ZU92 SMR:Q7ZU92 STRING:Q7ZU92 PRIDE:Q7ZU92
GeneID:791461 KEGG:dre:791461 NextBio:20930638 ArrayExpress:Q7ZU92
Uniprot:Q7ZU92
Length = 660
Score = 205 (77.2 bits), Expect = 5.9e-18, Sum P(3) = 5.9e-18
Identities = 73/271 (26%), Positives = 120/271 (44%)
Query: 89 EVQPSFNDS-KQQFETIFFKMRPAISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENS 146
E Q F S +++ E + + L T Q LI Q + K+ K L V +
Sbjct: 174 EDQREFIRSVEEKVEALLKNTDQTLDLEPCTGFQRKLIYQTLNSKYSKGL---HVEALET 230
Query: 147 CSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCF 206
+ + I D++ +E + +Q+ E++ ++GF VI +S KL+VGHN
Sbjct: 231 EKKERFIQISKVDDEERRRREQQKQQREQEELN--DAVGFSRVIRAISKSGKLVVGHNML 288
Query: 207 LDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAF 266
LD+ H +F GPLP ++F FP ++DTK++ +ST + F
Sbjct: 289 LDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLLDTKLM-------------AST---QPF 332
Query: 267 SVLCPQIALGSKSTHLALQPSVKVEVEVDD-IRSSNWNSGVKHEAGYDAFMTGCVFAQAC 325
+ +L L +P E + ++S + ++ HEAGYDAF+TG F
Sbjct: 333 KEIIHNTSLAELHKQLRQKPFRPPTTECPEGLQSYDTSTEQLHEAGYDAFITGLCFISMA 392
Query: 326 SHLGIDFKQQSSSENLAHNEKLREHVNLLYL 356
++LG F S A ++ L N L+L
Sbjct: 393 NYLG-SFLTPPKSHISARSKLLEPFYNKLFL 422
Score = 79 (32.9 bits), Expect = 5.9e-18, Sum P(3) = 5.9e-18
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + S T + N+
Sbjct: 113 IDFLASQGFDFNKVFRSGIPYLNQEEECQLREQYEERRGQMNGAGPVSYTPPSGTGVCNV 172
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQP 92
P+ E ++ + E + LL+N D+ +++P
Sbjct: 173 PEDQ-REFIRS-VEEKVEALLKNTDQTLDLEP 202
Score = 55 (24.4 bits), Expect = 5.9e-18, Sum P(3) = 5.9e-18
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 399 FPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
FP K D+ + S +G I V VD+T+ FV S+ E V
Sbjct: 450 FPKEWKTSDLYQLFS-AFGN---IQVSWVDDTSAFVSLSQTEQV 489
>UNIPROTKB|F1NEI8 [details] [associations]
symbol:F1NEI8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=IEA] [GO:0019901 "protein kinase binding"
evidence=IEA] InterPro:IPR001374 InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR012677 InterPro:IPR014789
Pfam:PF01424 Pfam:PF04857 Pfam:PF08675 PROSITE:PS51061
GO:GO:0005634 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
GO:GO:0046872 Gene3D:3.30.70.330 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0004535 GO:GO:0000289 GeneTree:ENSGT00530000063673
OMA:LEQTDSC EMBL:AADN02023913 IPI:IPI00576818
Ensembl:ENSGALT00000004886 Uniprot:F1NEI8
Length = 631
Score = 188 (71.2 bits), Expect = 5.9e-17, Sum P(3) = 5.9e-17
Identities = 59/216 (27%), Positives = 106/216 (49%)
Query: 153 VYIES-ESDKK---MLMKEVKDEQKIDAEMSIKA--------SIGFRHVIDLLSSEKKLI 200
+++E+ ESDKK +++ +V +E++ E +A ++GF V+ +++ KL+
Sbjct: 225 IHVETLESDKKERYIVISKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLV 284
Query: 201 VGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSST 260
+GHN LD+ H +F+ PLP EF + FP ++DTK++ ++ + ++T
Sbjct: 285 IGHNMLLDVMHTIHQFYCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPF---KDIINNT 341
Query: 261 SLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCV 320
SL++ L + + P KVE + S + S HEAGYDA++TG
Sbjct: 342 SLAE----------LEKRLKEVPFSPP-KVE-SAEGFPSYDTASEQLHEAGYDAYITGLC 389
Query: 321 FAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYL 356
F + LG F + A ++ + N L+L
Sbjct: 390 FISMANFLG-SFLSPPKNHVSARSKLIEPFFNKLFL 424
Score = 89 (36.4 bits), Expect = 5.9e-17, Sum P(3) = 5.9e-17
Identities = 31/125 (24%), Positives = 59/125 (47%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDE--SLDSWHSLKEIRDTHLF 58
+DFLA FDFN G+ YL++E+E + + Y+++ + SL I +
Sbjct: 113 IDFLANQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRSQANGAGSLSYI-SPNAT 167
Query: 59 NIPDILFAERMK--DRLSEWLGGLLRNRD-EGSEVQPSFN-DSKQQFETIFFKMRPAISL 114
P ++ ++ K D++ E + L+N + E E++P K ++T+ +K I +
Sbjct: 168 KCPVVIPEDQKKIIDKIVEQIEEFLKNEENESLELEPCTGFQRKLIYQTLSWKYPKGIHV 227
Query: 115 NGFTS 119
S
Sbjct: 228 ETLES 232
Score = 53 (23.7 bits), Expect = 5.9e-17, Sum P(3) = 5.9e-17
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 399 FPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
FP K D+ + S +G I V +D+T+ FV S+ E V
Sbjct: 452 FPKEWKTSDLYQLFS-AFGN---IQVSWIDDTSAFVSLSQPEQV 491
>UNIPROTKB|E1BVT8 [details] [associations]
symbol:PNLDC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00530000063673 OMA:SCDRESC
EMBL:AADN02035516 IPI:IPI00600799 Ensembl:ENSGALT00000018991
Uniprot:E1BVT8
Length = 529
Score = 213 (80.0 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 63/238 (26%), Positives = 119/238 (50%)
Query: 112 ISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDE 171
+ L + Q+L +QLV+R+ ++ + + G+N V+V S +++L E
Sbjct: 179 VILQDLSDSQMLDVQLVLRQALPNV-WTQPLGDNE----VMVKKVSLQHRRLL--ESSSH 231
Query: 172 QKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSV 231
E+ + ++ GF ++ ++ KK +VGHN +D+ H++ KF+ PLP + EEF ++
Sbjct: 232 DSCQKELILTSARGFTNLFQIIVRAKKPLVGHNMLMDLCHLHDKFYNPLPESYEEFKKNI 291
Query: 232 NKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHL-ALQPSVKV 290
+ FP +IDTK + + SI + ++L + + VLC S+ L + P+ V
Sbjct: 292 HHLFPVLIDTKTV--TKSIWKNYQFPRVSNLLEVYEVLC--------SSDLNPVDPACPV 341
Query: 291 EVEVDDIRSSNW-NSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKL 347
D S+ + HEA YDAF+ G V ++ L + +++ N + ++ L
Sbjct: 342 IAFASD--SARYAEKAAPHEAAYDAFLCGSVLLKSAHLLLCELTDDAATANPSFSQYL 397
Score = 63 (27.2 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQED 28
+ FL+ Y FD+N + +G+ Y++ QE+
Sbjct: 110 IQFLSHYGFDYNKFLKDGIPYMNELQEN 137
>UNIPROTKB|P69341 [details] [associations]
symbol:PARN "Poly(A)-specific ribonuclease PARN"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001374
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR012677
InterPro:IPR014789 Pfam:PF01424 Pfam:PF04857 Pfam:PF08675
PROSITE:PS51061 GO:GO:0005634 GO:GO:0005737 GO:GO:0000184
GO:GO:0000166 GO:GO:0046872 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004535 GO:GO:0000289 KO:K01148
eggNOG:NOG145331 EMBL:BC150015 IPI:IPI00730593
RefSeq:NP_001094588.1 UniGene:Bt.15863 ProteinModelPortal:P69341
SMR:P69341 STRING:P69341 PRIDE:P69341 Ensembl:ENSBTAT00000024087
GeneID:524155 KEGG:bta:524155 CTD:5073 GeneTree:ENSGT00530000063673
HOGENOM:HOG000007285 HOVERGEN:HBG053512 InParanoid:A6QQW2
OMA:LEQTDSC OrthoDB:EOG4JHCFF NextBio:20873902 Uniprot:P69341
Length = 638
Score = 192 (72.6 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 68/246 (27%), Positives = 111/246 (45%)
Query: 112 ISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 170
+ L T Q LI Q + K+ K + + E VI ++ E K+ ++
Sbjct: 200 LDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAK 259
Query: 171 EQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISS 230
EQ+ + ++GF VI +++ KL++GHN LD+ H +F+ PLP EF
Sbjct: 260 EQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEM 314
Query: 231 VNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKV 290
FP ++DTK++ ++ + ++TSL++ L K T P KV
Sbjct: 315 TTCVFPRLLDTKLMASTQPF---KDIINNTSLAELEKRL--------KET--PFNPP-KV 360
Query: 291 EVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREH 350
E + S + S HEAGYDA++TG F ++LG F S A ++ +
Sbjct: 361 E-SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKSHVSARSKLIEPF 418
Query: 351 VNLLYL 356
N L+L
Sbjct: 419 FNKLFL 424
Score = 73 (30.8 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQE 27
+DFLA FDFN G+ YL++E+E
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEE 139
Score = 52 (23.4 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 399 FPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 452 FPKEWKTSDLYQLFS-AFGN---IQISWIDDTSAFVSLSQPEQV 491
>UNIPROTKB|E2QZA0 [details] [associations]
symbol:PARN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001374 InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR012677 InterPro:IPR014789
Pfam:PF01424 Pfam:PF04857 Pfam:PF08675 PROSITE:PS51061
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0046872
Gene3D:3.30.70.330 GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0006402
GO:GO:0004535 Ensembl:ENSCAFT00000029839 Uniprot:E2QZA0
Length = 496
Score = 183 (69.5 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 66/247 (26%), Positives = 111/247 (44%)
Query: 112 ISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 170
+ L T Q LI Q + K+ K + + E VI ++ E K+ ++
Sbjct: 202 LDLEPCTGFQRKLIYQTLSWKYPKGIHVDTLETEKKERYIVISKVDEEERKR------RE 255
Query: 171 EQKIDAEMS-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFIS 229
+QK+ E + ++GF VI +++ KL++GHN LD+ H +F+ PLP EF
Sbjct: 256 QQKLAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKE 315
Query: 230 SVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVK 289
FP ++DTK++ ++ + ++TSL++ L K T P K
Sbjct: 316 MTTCVFPRLLDTKLMASTQPF---KDIINNTSLAELEKRL--------KET--PFNPP-K 361
Query: 290 VEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLRE 349
VE + S + + HEAGYDA++TG F ++L F A ++ +
Sbjct: 362 VE-SAEGFPSYDTATEQLHEAGYDAYITGLCFISMANYLVGSFLSPPKIHVSARSKLIEP 420
Query: 350 HVNLLYL 356
N L+L
Sbjct: 421 FFNKLFL 427
Score = 78 (32.5 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS 45
+DFLA FDFN G+ YL+ E+E + + Y+++ L S
Sbjct: 115 IDFLASQGFDFNKVFRNGIPYLNHEEE----RQLREQYDEKRLQS 155
Score = 51 (23.0 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 399 FPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 455 FPKEWKTSDLYQLFS-AFGN---IHISWIDDTSAFVSLSQPEQV 494
>UNIPROTKB|F6XU41 [details] [associations]
symbol:PARN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001374 InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR012677 InterPro:IPR014789
Pfam:PF01424 Pfam:PF04857 Pfam:PF08675 PROSITE:PS51061
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0046872
Gene3D:3.30.70.330 GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0006402
GO:GO:0004535 KO:K01148 CTD:5073 GeneTree:ENSGT00530000063673
OMA:LEQTDSC Ensembl:ENSCAFT00000029839 EMBL:AAEX03004504
EMBL:AAEX03004505 RefSeq:XP_536966.2 GeneID:479839 KEGG:cfa:479839
Uniprot:F6XU41
Length = 638
Score = 187 (70.9 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 67/247 (27%), Positives = 112/247 (45%)
Query: 112 ISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 170
+ L T Q LI Q + K+ K + + E VI ++ E K+ ++
Sbjct: 200 LDLEPCTGFQRKLIYQTLSWKYPKGIHVDTLETEKKERYIVISKVDEEERKR------RE 253
Query: 171 EQKIDAEMS-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFIS 229
+QK+ E + ++GF VI +++ KL++GHN LD+ H +F+ PLP EF
Sbjct: 254 QQKLAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKE 313
Query: 230 SVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVK 289
FP ++DTK++ ++ + ++TSL++ L K T P K
Sbjct: 314 MTTCVFPRLLDTKLMASTQPF---KDIINNTSLAELEKRL--------KET--PFNPP-K 359
Query: 290 VEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLRE 349
VE + S + + HEAGYDA++TG F ++LG F A ++ +
Sbjct: 360 VE-SAEGFPSYDTATEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEP 417
Query: 350 HVNLLYL 356
N L+L
Sbjct: 418 FFNKLFL 424
Score = 78 (32.5 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS 45
+DFLA FDFN G+ YL+ E+E + + Y+++ L S
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNHEEE----RQLREQYDEKRLQS 153
Score = 51 (23.0 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 399 FPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 452 FPKEWKTSDLYQLFS-AFGN---IHISWIDDTSAFVSLSQPEQV 491
>RGD|1565449 [details] [associations]
symbol:Parn "poly(A)-specific ribonuclease" species:10116
"Rattus norvegicus" [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0019901 "protein kinase binding" evidence=ISO]
InterPro:IPR001374 InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR012677 InterPro:IPR014789 Pfam:PF01424 Pfam:PF04857
Pfam:PF08675 PROSITE:PS51061 RGD:1565449 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0046872 Gene3D:3.30.70.330
GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0006402 GO:GO:0004535 KO:K01148
CTD:5073 EMBL:HQ123458 RefSeq:NP_001257344.1 UniGene:Rn.98642
GeneID:360464 KEGG:rno:360464 Uniprot:G3CM75
Length = 624
Score = 191 (72.3 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 63/219 (28%), Positives = 103/219 (47%)
Query: 112 ISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 170
+ LN T Q LI Q + K+ K + + + VI ++ E K+ ++
Sbjct: 193 LELNPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYAK 252
Query: 171 EQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISS 230
EQ+ + ++GF VI +++ KL+VGHN LD+ H +F+ PLP+ EF
Sbjct: 253 EQE-----ELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPVDLNEFKEM 307
Query: 231 VNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKV 290
FP ++DTK++ ++ + ++TSL++ L K T P KV
Sbjct: 308 TTCVFPRLLDTKLMASTQPF---KDIINNTSLAELEKRL--------KET--PFDPP-KV 353
Query: 291 EVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 329
E + S + S HEAGYDA++TG F ++LG
Sbjct: 354 E-SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 391
Score = 70 (29.7 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQE 27
+DFLA FDFN G+ YL++E+E
Sbjct: 113 IDFLASQGFDFNKVFCSGIPYLNQEEE 139
Score = 52 (23.4 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 399 FPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 445 FPKEWKTSDLYQLFS-AFGN---IQISWIDDTSAFVSLSQPEQV 484
>UNIPROTKB|O95453 [details] [associations]
symbol:PARN "Poly(A)-specific ribonuclease PARN"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IPI] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0004518
"nuclease activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] [GO:0005737 "cytoplasm" evidence=TAS] [GO:0007292
"female gamete generation" evidence=TAS] [GO:0009451 "RNA
modification" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR001374
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR012677
InterPro:IPR014789 Pfam:PF01424 Pfam:PF04857 Pfam:PF08675
PROSITE:PS51061 PDB:2A1R GO:GO:0005829 GO:GO:0005634 GO:GO:0005730
GO:GO:0000184 GO:GO:0000166 GO:GO:0046872 Gene3D:3.30.70.330
EMBL:CH471112 GO:GO:0003730 SUPFAM:SSF53098 GO:GO:0007292
GO:GO:0004535 GO:GO:0000289 GO:GO:0009451 DNASU:2987
PharmGKB:PA29072 BRENDA:3.1.13.4 EMBL:AC009167 KO:K01148
eggNOG:NOG145331 CTD:5073 HOGENOM:HOG000007285 HOVERGEN:HBG053512
OMA:LEQTDSC EMBL:AJ005698 EMBL:AK293189 EMBL:AK301648 EMBL:AK315020
EMBL:AC092291 EMBL:BC050029 IPI:IPI00294744 RefSeq:NP_001127949.1
RefSeq:NP_001229921.1 RefSeq:NP_002573.1 UniGene:Hs.253197 PDB:2A1S
PDB:3CTR PDBsum:2A1R PDBsum:2A1S PDBsum:3CTR
ProteinModelPortal:O95453 SMR:O95453 DIP:DIP-31124N IntAct:O95453
STRING:O95453 PhosphoSite:O95453 SWISS-2DPAGE:O95453 PaxDb:O95453
PRIDE:O95453 DNASU:5073 Ensembl:ENST00000341484
Ensembl:ENST00000420015 Ensembl:ENST00000437198 GeneID:5073
KEGG:hsa:5073 UCSC:uc010uzc.2 GeneCards:GC16M014529 HGNC:HGNC:8609
HPA:CAB011673 HPA:HPA006314 HPA:HPA012010 MIM:604212
neXtProt:NX_O95453 PharmGKB:PA32949 InParanoid:O95453 ChiTaRS:PARN
EvolutionaryTrace:O95453 NextBio:19548 ArrayExpress:O95453
Bgee:O95453 CleanEx:HS_PARN Genevestigator:O95453
GermOnline:ENSG00000140694 Uniprot:O95453
Length = 639
Score = 186 (70.5 bits), Expect = 5.7e-15, Sum P(3) = 5.7e-15
Identities = 67/246 (27%), Positives = 110/246 (44%)
Query: 112 ISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 170
+ L T Q LI Q + K+ K + + E VI ++ E K+ ++
Sbjct: 200 LDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAK 259
Query: 171 EQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISS 230
EQ+ + ++GF VI +++ KL++GHN LD+ H +F+ PLP EF
Sbjct: 260 EQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEM 314
Query: 231 VNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKV 290
FP ++DTK++ ++ + ++TSL++ L K T P KV
Sbjct: 315 TTCVFPRLLDTKLMASTQPF---KDIINNTSLAELEKRL--------KET--PFNPP-KV 360
Query: 291 EVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREH 350
E + S + S HEAGYDA++TG F ++LG F A ++ +
Sbjct: 361 E-SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPF 418
Query: 351 VNLLYL 356
N L+L
Sbjct: 419 FNKLFL 424
Score = 73 (30.8 bits), Expect = 5.7e-15, Sum P(3) = 5.7e-15
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQE 27
+DFLA FDFN G+ YL++E+E
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEE 139
Score = 52 (23.4 bits), Expect = 5.7e-15, Sum P(3) = 5.7e-15
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 399 FPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 452 FPKEWKTSDLYQLFS-AFGN---IQISWIDDTSAFVSLSQPEQV 491
>UNIPROTKB|F1SB65 [details] [associations]
symbol:PNLDC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
GeneTree:ENSGT00530000063673 CTD:154197 OMA:SCDRESC EMBL:CU855864
RefSeq:XP_001926376.2 UniGene:Ssc.85453 Ensembl:ENSSSCT00000004474
GeneID:100152694 KEGG:ssc:100152694 Uniprot:F1SB65
Length = 531
Score = 192 (72.6 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 63/218 (28%), Positives = 105/218 (48%)
Query: 112 ISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 170
++L G T Q +QLV+RK ++ LR Q VIV S+ + L D
Sbjct: 181 MTLPGITGFQAFEVQLVLRKALPNIWTVLR-------DQGVIVKKVSKQHRWYLENTSCD 233
Query: 171 EQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISS 230
+ E + ++ GF +L +K +VGHN +D+ H++ KFF PLP + E+F +
Sbjct: 234 RESCWKEKILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYEDFKLN 293
Query: 231 VNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKV 290
++ FP +IDTK + + + ++ ++LS+ + VL + S + + S K
Sbjct: 294 IHNLFPILIDTKNV--TKDVWKELSFPRVSNLSEVYEVLNSDLNPTKDSGPVIIHAS-KC 350
Query: 291 EVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
E V+ + HEA YDAF+ G V + +HL
Sbjct: 351 EKYVE--------TKYPHEAAYDAFLCGSVLLKV-AHL 379
Score = 74 (31.1 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 33
+ FL +Y FD+N + G+ Y++ EQE K ++H
Sbjct: 112 VQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IRH 143
>UNIPROTKB|F1MX01 [details] [associations]
symbol:PNLDC1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
GeneTree:ENSGT00530000063673 OMA:SCDRESC EMBL:DAAA02027371
EMBL:DAAA02027372 IPI:IPI01001609 Ensembl:ENSBTAT00000020180
Uniprot:F1MX01
Length = 531
Score = 188 (71.2 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 63/218 (28%), Positives = 103/218 (47%)
Query: 112 ISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 170
++L G Q +QLV+RK D+ LR Q VIV S + L D
Sbjct: 181 MTLPGIAGFQAFEVQLVLRKALPDIWTVLR-------DQGVIVKKVSTQHRWYLETTSCD 233
Query: 171 EQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISS 230
+ E + ++ GF +L +K +VGHN +D+ H++ KFF PLP + +EF +
Sbjct: 234 RESCWKEKILLSARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLN 293
Query: 231 VNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKV 290
++ FP +IDTK + + I ++ ++LS+ + VL + S + + S +
Sbjct: 294 IHNLFPVLIDTKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIIHAS-RC 350
Query: 291 EVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
E V+ + HEA YDAF+ G V + +HL
Sbjct: 351 EKYVE--------TKYPHEAAYDAFLCGSVLLKV-AHL 379
Score = 77 (32.2 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 33
+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 112 VQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKH 143
>UNIPROTKB|E2R0L8 [details] [associations]
symbol:PNLDC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00530000063673 CTD:154197 OMA:SCDRESC
EMBL:AAEX03000318 RefSeq:XP_541182.3 Ensembl:ENSCAFT00000001145
GeneID:484065 KEGG:cfa:484065 Uniprot:E2R0L8
Length = 531
Score = 186 (70.5 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 61/218 (27%), Positives = 104/218 (47%)
Query: 112 ISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 170
++L G Q +QLV+R+ D+ LR Q +IV S+ + L D
Sbjct: 181 MTLPGIAGFQAFEVQLVLRQALPDIWTVLR-------DQGIIVKKVSKQHRWYLENTSCD 233
Query: 171 EQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISS 230
+ E + ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +
Sbjct: 234 RESCWKEKILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKLN 293
Query: 231 VNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKV 290
++ FP +IDTK + + I ++ ++LS+ + VL + S + + S K
Sbjct: 294 IHNLFPILIDTKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVVIHAS-KC 350
Query: 291 EVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
E V+ + HEA YDAF+ G V + +HL
Sbjct: 351 EKYVE--------TKYPHEAAYDAFLCGSVLLKV-AHL 379
Score = 77 (32.2 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 33
+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 112 VQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKH 143
>MGI|MGI:1921358 [details] [associations]
symbol:Parn "poly(A)-specific ribonuclease (deadenylation
nuclease)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISO]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006402 "mRNA catabolic process" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0019901 "protein
kinase binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001374 InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR012677 InterPro:IPR014789
Pfam:PF01424 Pfam:PF04857 Pfam:PF08675 PROSITE:PS51061
MGI:MGI:1921358 GO:GO:0005737 GO:GO:0005730 GO:GO:0000184
GO:GO:0000166 GO:GO:0046872 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004535 GO:GO:0000289 KO:K01148
eggNOG:NOG145331 CTD:5073 GeneTree:ENSGT00530000063673
HOGENOM:HOG000007285 HOVERGEN:HBG053512 OrthoDB:EOG4JHCFF
ChiTaRS:PARN EMBL:AK004572 EMBL:AK045181 EMBL:BC021899
IPI:IPI00311534 RefSeq:NP_083037.1 UniGene:Mm.182350 PDB:1UG8
PDB:1WHV PDB:2ROK PDB:3D45 PDBsum:1UG8 PDBsum:1WHV PDBsum:2ROK
PDBsum:3D45 ProteinModelPortal:Q8VDG3 SMR:Q8VDG3 DIP:DIP-48330N
STRING:Q8VDG3 PhosphoSite:Q8VDG3 PaxDb:Q8VDG3 PRIDE:Q8VDG3
Ensembl:ENSMUST00000058884 GeneID:74108 KEGG:mmu:74108
InParanoid:Q8VDG3 EvolutionaryTrace:Q8VDG3 NextBio:339800
Bgee:Q8VDG3 Genevestigator:Q8VDG3 GermOnline:ENSMUSG00000022685
Uniprot:Q8VDG3
Length = 624
Score = 182 (69.1 bits), Expect = 2.9e-14, Sum P(3) = 2.9e-14
Identities = 62/220 (28%), Positives = 103/220 (46%)
Query: 111 AISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVK 169
++ L+ T Q LI Q + K+ K + + + VI ++ E K+ ++
Sbjct: 192 SLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYT 251
Query: 170 DEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFIS 229
EQ+ + ++GF VI +++ KL+VGHN LD+ H +F+ PLP EF
Sbjct: 252 KEQE-----ELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKE 306
Query: 230 SVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVK 289
FP ++DTK++ ++ + ++TSL++ L K T P K
Sbjct: 307 MAICVFPRLLDTKLMASTQPF---KDIINNTSLAELEKRL--------KET--PFDPP-K 352
Query: 290 VEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 329
VE + S + S HEAGYDA++TG F ++LG
Sbjct: 353 VE-SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 391
Score = 70 (29.7 bits), Expect = 2.9e-14, Sum P(3) = 2.9e-14
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQE 27
+DFLA FDFN G+ YL++E+E
Sbjct: 113 IDFLASQGFDFNKVFCSGIPYLNQEEE 139
Score = 52 (23.4 bits), Expect = 2.9e-14, Sum P(3) = 2.9e-14
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 399 FPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 445 FPKEWKTSDLYQLFS-AFGN---IQISWIDDTSAFVSLSQPEQV 484
>UNIPROTKB|Q8NA58 [details] [associations]
symbol:PNLDC1 "Poly(A)-specific ribonuclease PARN-like
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
GO:GO:0016021 GO:GO:0005634 EMBL:CH471051 GO:GO:0003676
SUPFAM:SSF53098 HSSP:O95453 eggNOG:NOG145331 EMBL:AK093139
EMBL:AK097559 EMBL:AL139045 EMBL:BC112246 IPI:IPI00167911
IPI:IPI00797928 RefSeq:NP_775787.1 UniGene:Hs.349077
ProteinModelPortal:Q8NA58 PhosphoSite:Q8NA58 DMDM:160419239
PaxDb:Q8NA58 PRIDE:Q8NA58 Ensembl:ENST00000275275
Ensembl:ENST00000392167 GeneID:154197 KEGG:hsa:154197
UCSC:uc003qsx.1 UCSC:uc003qsy.1 CTD:154197 GeneCards:GC06P160221
HGNC:HGNC:21185 HPA:HPA052026 neXtProt:NX_Q8NA58
PharmGKB:PA134892245 HOGENOM:HOG000115590 HOVERGEN:HBG101204
OMA:SCDRESC OrthoDB:EOG40P46K PhylomeDB:Q8NA58 GenomeRNAi:154197
NextBio:87251 Bgee:Q8NA58 CleanEx:HS_PNLDC1 Genevestigator:Q8NA58
Uniprot:Q8NA58
Length = 520
Score = 179 (68.1 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 58/218 (26%), Positives = 107/218 (49%)
Query: 112 ISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 170
++L G T Q +QLV+R+ ++ L+ G V+V S+ + L D
Sbjct: 170 MTLPGITGFQAFEVQLVLRQALPNIWTVLKDEG-------VVVKKVSKQHRWYLQNTSCD 222
Query: 171 EQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISS 230
+ E + ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +
Sbjct: 223 RESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQN 282
Query: 231 VNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKV 290
++ FP +IDTK + + I ++ ++LS+ + VL + +K++ + + +
Sbjct: 283 IHSLFPVLIDTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN-PTKNSGPEIVHASRC 339
Query: 291 EVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
E V+ + HEA YDAF+ G V + +HL
Sbjct: 340 EKYVE--------TKCPHEAAYDAFLCGSVLLKV-AHL 368
Score = 69 (29.3 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 33
+ FL +Y F++N + G+ Y++ EQE K ++H
Sbjct: 101 VQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH 132
>UNIPROTKB|E9PU60 [details] [associations]
symbol:Pnldc1 "Protein Pnldc1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00530000063673 IPI:IPI00365411
Ensembl:ENSRNOT00000060412 Uniprot:E9PU60
Length = 531
Score = 169 (64.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 65/254 (25%), Positives = 118/254 (46%)
Query: 112 ISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 170
++L G + Q +QLV+R+ ++ L+ G VIV S+ + L D
Sbjct: 181 MTLPGISGFQAFEVQLVLRQALPNIWTVLKEEG-------VIVKKVSQPHRWYLEHASCD 233
Query: 171 EQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISS 230
+ E + ++ GF +L +K +VGHN D+ H++ KFF PLP + ++F +
Sbjct: 234 QVTCWKEQILLSARGFSVFFQMLVKAQKPLVGHNMMTDLLHLHEKFFRPLPESYDQFKQN 293
Query: 231 VNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKV 290
++ FP +IDTK + + I ++ ++LS+ + VL S++L P+
Sbjct: 294 IHSLFPVLIDTKNV--TKDIWKELRFPRVSNLSEVYEVL---------SSNL--NPTKNS 340
Query: 291 EVEVDDIRSSNWNSGVK--HEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLR 348
+ R + K HEA YDAF+ G V + +HL + Q+ H
Sbjct: 341 GPVIIHARQCKKYAETKCPHEAAYDAFLCGSVLLKV-AHLLL---QRVHGSGAVHEPAFP 396
Query: 349 EHVNLL--YLSWTN 360
+++++L Y++ N
Sbjct: 397 QYLDVLAPYVNQVN 410
Score = 77 (32.2 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKH 33
+ FL +Y FD+N + G+ Y++ EQE K +KH
Sbjct: 112 VQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKH 143
>UNIPROTKB|B4DSB0 [details] [associations]
symbol:PARN "cDNA FLJ58618, highly similar to
Poly(A)-specific ribonuclease PARN (EC 3.1.13.4)" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR012677 InterPro:IPR014789
Pfam:PF04857 Pfam:PF08675 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0046872 Gene3D:3.30.70.330 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0006402 GO:GO:0004535 EMBL:AC009167 HOVERGEN:HBG053512
EMBL:AC092291 UniGene:Hs.253197 HGNC:HGNC:8609 ChiTaRS:PARN
EMBL:AK299653 IPI:IPI00976057 SMR:B4DSB0 STRING:B4DSB0
Ensembl:ENST00000539279 UCSC:uc010uzf.2 Uniprot:B4DSB0
Length = 464
Score = 184 (69.8 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 56/201 (27%), Positives = 95/201 (47%)
Query: 156 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 215
E E ++ K K++++++ ++GF VI +++ KL++GHN LD+ H +
Sbjct: 71 EEERKRREQQKHAKEQEELND------AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQ 124
Query: 216 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 275
F+ PLP EF FP ++DTK++ ++ + ++TSL++ L
Sbjct: 125 FYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPF---KDIINNTSLAELEKRL------ 175
Query: 276 GSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQ 335
K T P KVE + S + S HEAGYDA++TG F ++LG F
Sbjct: 176 --KET--PFNPP-KVE-SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSP 228
Query: 336 SSSENLAHNEKLREHVNLLYL 356
A ++ + N L+L
Sbjct: 229 PKIHVSARSKLIEPFFNKLFL 249
Score = 52 (23.4 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 399 FPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 277 FPKEWKTSDLYQLFS-AFGN---IQISWIDDTSAFVSLSQPEQV 316
>POMBASE|SPBC29A10.09c [details] [associations]
symbol:SPBC29A10.09c "CAF1 family ribonuclease
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003676
"nucleic acid binding" evidence=ISM] [GO:0003723 "RNA binding"
evidence=IC] [GO:0004540 "ribonuclease activity" evidence=ISM]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006402 "mRNA catabolic
process" evidence=ISM] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 PomBase:SPBC29A10.09c GO:GO:0005634 EMBL:CU329671
GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0006402 GO:GO:0004540
HSSP:O95453 eggNOG:NOG145331 PIR:T40064 RefSeq:NP_596054.1
ProteinModelPortal:O94386 EnsemblFungi:SPBC29A10.09c.1
GeneID:2540515 KEGG:spo:SPBC29A10.09c OMA:ASIDHIC OrthoDB:EOG4DZ542
NextBio:20801642 Uniprot:O94386
Length = 427
Score = 158 (60.7 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 56/204 (27%), Positives = 91/204 (44%)
Query: 122 LLLIQLVVRKHFKDLAYLRVSG--ENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
L+ I+ K + +L+V ENS +Q S + K L +++ +Q I ++
Sbjct: 201 LVKIEFPTLKSYPKRTFLQVRKAIENSTTQC------SATSKSELKEDIASDQLILNNLN 254
Query: 180 -IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
IK ++G RH+ D + +KK +V HN D+ +++S F G +P T EF F I
Sbjct: 255 LIKQNVGLRHLWDYILKKKKSVVCHNGMADLVYLFSLFEGKVPETILEFSELCLSSFKSI 314
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFS-VLCPQIALGSKSTHLALQPSVKVEVEVDDI 297
DTK+L + LQ T L S + P + S S + + +E +
Sbjct: 315 YDTKLLYLKSDDLQHVSDGIPTDLLSLVSKISLPPVPSNSSSQRSNVSLNSLIECPYKSM 374
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVF 321
S HEAG D++ T +F
Sbjct: 375 MSRKR----PHEAGKDSYDTALLF 394
Score = 77 (32.2 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS 45
FL + FDFN + EGV YLSR +E + VN D+ S
Sbjct: 110 FLIQQGFDFNKQLTEGVPYLSRIEERNLIDKVNERSTDDLTSS 152
>UNIPROTKB|H3BRK1 [details] [associations]
symbol:PARN "Poly(A)-specific ribonuclease PARN"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001374 InterPro:IPR006941 InterPro:IPR012337
Pfam:PF01424 Pfam:PF04857 PROSITE:PS51061 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC009167 EMBL:AC092291
HGNC:HGNC:8609 ChiTaRS:PARN Ensembl:ENST00000569444 Uniprot:H3BRK1
Length = 261
Score = 177 (67.4 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 52/174 (29%), Positives = 83/174 (47%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP ++DTK
Sbjct: 89 AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK 148
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNW 302
++ ++ + ++TSL++ L K T P KVE + S +
Sbjct: 149 LMASTQPF---KDIINNTSLAELEKRL--------KET--PFNPP-KVE-SAEGFPSYDT 193
Query: 303 NSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYL 356
S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 194 ASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFL 246
>WB|WBGene00010734 [details] [associations]
symbol:K10C8.1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
GO:GO:0005634 GO:GO:0040011 GO:GO:0003676 SUPFAM:SSF53098
eggNOG:NOG145331 GeneTree:ENSGT00530000063673 EMBL:Z74474
PIR:T23559 RefSeq:NP_506169.2 UniGene:Cel.3035
ProteinModelPortal:Q21412 SMR:Q21412 DIP:DIP-24647N
MINT:MINT-1067350 STRING:Q21412 EnsemblMetazoa:K10C8.1
GeneID:187256 KEGG:cel:CELE_K10C8.1 UCSC:K10C8.1 CTD:187256
WormBase:K10C8.1 HOGENOM:HOG000018664 InParanoid:Q21412 OMA:PIVGHNF
NextBio:934662 Uniprot:Q21412
Length = 566
Score = 163 (62.4 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 63/250 (25%), Positives = 115/250 (46%)
Query: 99 QQFETIFFKMRP--AISLN---GFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIV 153
+ + I KM+P ++SL +S + +I + K F +L E QN+
Sbjct: 178 EPMQKIPLKMKPNSSVSLRMPRNLSSVEKYMIIYELTKAFPQ--FLFTCDEKQ--QNL-- 231
Query: 154 YIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIY 213
++++ SD + K+ + + S+K G ++ ++ KL+VGHN LD ++Y
Sbjct: 232 HVKNISDDYLKEKDNLERARARCSESVK---GVSAILQVVHMTGKLVVGHNSLLDAMYMY 288
Query: 214 SKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQI 273
FF LP + F N FP I+DTK+L + + S +L F
Sbjct: 289 HYFFSHLPANYQMFKDKFNALFPRIMDTKLLAQALRFELPGVGDSLENLGDYF------- 341
Query: 274 ALGSKSTHLALQPSVK--VEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID 331
GS + + P ++ +E ++ + + N V H AG+D+++TG VF + +H+ I+
Sbjct: 342 --GSDKSDKTVPPELRGFIEPWMNPLEDESEN--VYHNAGFDSYVTGEVFLKL-AHIYIN 396
Query: 332 FKQQSSSENL 341
+ +E L
Sbjct: 397 RRNNFKNEIL 406
Score = 50 (22.7 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDK 29
M FL K +F+ N +GV + +R++ K
Sbjct: 103 MRFLVKNKFNLNQVFMDGVEFCTRKEFKK 131
>UNIPROTKB|F1RLR7 [details] [associations]
symbol:PARN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR012677
InterPro:IPR014789 Pfam:PF04857 Pfam:PF08675 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 GO:GO:0046872
Gene3D:3.30.70.330 GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0004535
GO:GO:0000289 GeneTree:ENSGT00530000063673 EMBL:CU694585
EMBL:CU466495 Ensembl:ENSSSCT00000008633 Uniprot:F1RLR7
Length = 350
Score = 120 (47.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 43/150 (28%), Positives = 67/150 (44%)
Query: 207 LDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAF 266
LD+ H +F+ PLP EF FP ++DTK++ ++ + ++TSL++
Sbjct: 3 LDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPF---KDIINNTSLAELE 59
Query: 267 SVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACS 326
L K T P KVE + S + S HEAGYDA++TG F +
Sbjct: 60 KRL--------KET--PFNPP-KVE-SAEGFPSYDTASEQLHEAGYDAYITGLCFISMAN 107
Query: 327 HLGIDFKQQSSSENLAHNEKLREHVNLLYL 356
+LG F A ++ + N L+L
Sbjct: 108 YLG-SFLSPPKIHVSARSKLIEPFFNKLFL 136
Score = 52 (23.4 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 399 FPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 164 FPKEWKTSDLYQLFS-AFGN---IQISWIDDTSAFVSLSQPEQV 203
>ZFIN|ZDB-GENE-070912-533 [details] [associations]
symbol:toe1 "target of EGR1, member 1 (nuclear)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000571
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 PROSITE:PS50103
ZFIN:ZDB-GENE-070912-533 GO:GO:0005634 GO:GO:0008270 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00390000004077 EMBL:BX649522
EMBL:CU571172 IPI:IPI00898852 Ensembl:ENSDART00000115364
Bgee:F1Q5Z4 Uniprot:F1Q5Z4
Length = 487
Score = 85 (35.0 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 190 IDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH-IIDTKI----- 243
++LL + K L++ HN +D+ +Y F+ LP F + +++ FP I DTK
Sbjct: 151 VELLRANKPLVL-HNGLIDLVFLYQCFYAHLPDRLGTFTADLSQMFPSGIYDTKYATEYE 209
Query: 244 LLNSNSILQQRMKKSSTSLSKA 265
L + S L+ KK SKA
Sbjct: 210 LRFTASYLEYAYKKCKLENSKA 231
Score = 79 (32.9 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 32/102 (31%), Positives = 51/102 (50%)
Query: 285 QPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHN 344
QP E + + + G H AG+DAFMTG +FA A +L + K++SSS +
Sbjct: 380 QPEASTEAQ-EKPKGKKVEGGT-HRAGFDAFMTGYIFAYA-RNL-MKNKEESSSTPV--- 432
Query: 345 EKLREHVNLLYLSWTNGEIINLSTGNRT-SESLASNKRKNHY 385
+ +N L+LS G+ + L T S+S ++ +K Y
Sbjct: 433 --ISTCLNKLFLS---GKSVPLHVAKSTFSKSSKAHVQKMAY 469
Score = 49 (22.3 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 1 MDFLAKYQFDFNACIHEGVSY 21
+ FL ++ FDFN EG+ Y
Sbjct: 111 VQFLVQHGFDFNKQYAEGIPY 131
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 573 559 0.00099 119 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 624 (66 KB)
Total size of DFA: 331 KB (2167 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 50.80u 0.16s 50.96t Elapsed: 00:00:03
Total cpu time: 50.81u 0.16s 50.97t Elapsed: 00:00:03
Start: Tue May 21 13:38:52 2013 End: Tue May 21 13:38:55 2013