BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008236
(573 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225461941|ref|XP_002266069.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Vitis vinifera]
Length = 734
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/576 (64%), Positives = 464/576 (80%), Gaps = 8/576 (1%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLAKYQFDFNACI+EG+SYLSREQE++ L+ +NS +DE W ++KE+RDT L ++
Sbjct: 152 IDFLAKYQFDFNACIYEGISYLSREQENEMLRCLNSECDDEMSLLWRNMKEVRDTPLVSV 211
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D+LF+ERMK+R +EW LL++R GS+ + ND KQQF+TIFFKMRPA+ LNGFT+H
Sbjct: 212 ADVLFSERMKNRFNEWRKELLQDRKGGSQFLETSNDMKQQFQTIFFKMRPALILNGFTAH 271
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL LIQLV++KHFKDL Y+R SG+ S S+ +IVYI+S++DK +LMKEVKD + +AEM I
Sbjct: 272 QLRLIQLVIKKHFKDLVYIRSSGDGSYSE-LIVYIDSDNDKNLLMKEVKDGLRREAEMKI 330
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
K ++GFRHVIDLLSSE+KLIVGHNC LDIAHIY+KFFGPLPLTAE+F+SS++KYFP++ID
Sbjct: 331 KTAVGFRHVIDLLSSEQKLIVGHNCLLDIAHIYNKFFGPLPLTAEDFVSSIHKYFPYMID 390
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TKILLN+N++L+ MK STSLSKAF+ LCPQIA SK++ LA QP V+VEV+VDD+RSS
Sbjct: 391 TKILLNTNNVLKHLMKNGSTSLSKAFASLCPQIASSSKNSGLAFQPWVEVEVQVDDMRSS 450
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
NWNSG KHEAGYDAFMTGCVFAQACS+LGIDFK+ SSS NLAHN+ L++HVN LY SW N
Sbjct: 451 NWNSGAKHEAGYDAFMTGCVFAQACSNLGIDFKKHSSSANLAHNKNLQKHVNHLYFSWVN 510
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
G+II+L TGNR + + K YPKILF IVIVWGFPS L + IRECISK +GP S
Sbjct: 511 GDIIDLGTGNRIAATTVCYNLKRRYPKILFSNIVIVWGFPSQLSSKKIRECISKAFGPIS 570
Query: 421 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 480
V ++YH+DETAVFVQFS+ E+V+ FL LK +L+ DPISVLHPL+ LLEGGNTCAASYE
Sbjct: 571 VTTIYHLDETAVFVQFSKPELVADFLVLKETLETIQDPISVLHPLSVLLEGGNTCAASYE 630
Query: 481 TYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSD--KTKEHESLRKVKAVN---SDPSC 535
TYKEICSS +SKV+FADQAKAVGIKWKTKL+ES + KT+E ES K SDP+
Sbjct: 631 TYKEICSSPISKVMFADQAKAVGIKWKTKLIESKEKVKTQEDESFSKENGATDAASDPA- 689
Query: 536 GERTKNKNFDDVSNDSSYSQLSSDEIIDSFYTREAK 571
+++K + +DV ++ S ++S EIIDS Y + K
Sbjct: 690 -DKSKTRKIEDVIDNLSDDRISGSEIIDSLYAAQTK 724
>gi|296089929|emb|CBI39748.3| unnamed protein product [Vitis vinifera]
Length = 715
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/563 (64%), Positives = 457/563 (81%), Gaps = 8/563 (1%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLAKYQFDFNACI+EG+SYLSREQE++ L+ +NS +DE W ++KE+RDT L ++
Sbjct: 152 IDFLAKYQFDFNACIYEGISYLSREQENEMLRCLNSECDDEMSLLWRNMKEVRDTPLVSV 211
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D+LF+ERMK+R +EW LL++R GS+ + ND KQQF+TIFFKMRPA+ LNGFT+H
Sbjct: 212 ADVLFSERMKNRFNEWRKELLQDRKGGSQFLETSNDMKQQFQTIFFKMRPALILNGFTAH 271
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL LIQLV++KHFKDL Y+R SG+ S S+ +IVYI+S++DK +LMKEVKD + +AEM I
Sbjct: 272 QLRLIQLVIKKHFKDLVYIRSSGDGSYSE-LIVYIDSDNDKNLLMKEVKDGLRREAEMKI 330
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
K ++GFRHVIDLLSSE+KLIVGHNC LDIAHIY+KFFGPLPLTAE+F+SS++KYFP++ID
Sbjct: 331 KTAVGFRHVIDLLSSEQKLIVGHNCLLDIAHIYNKFFGPLPLTAEDFVSSIHKYFPYMID 390
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TKILLN+N++L+ MK STSLSKAF+ LCPQIA SK++ LA QP V+VEV+VDD+RSS
Sbjct: 391 TKILLNTNNVLKHLMKNGSTSLSKAFASLCPQIASSSKNSGLAFQPWVEVEVQVDDMRSS 450
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
NWNSG KHEAGYDAFMTGCVFAQACS+LGIDFK+ SSS NLAHN+ L++HVN LY SW N
Sbjct: 451 NWNSGAKHEAGYDAFMTGCVFAQACSNLGIDFKKHSSSANLAHNKNLQKHVNHLYFSWVN 510
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
G+II+L TGNR + + K YPKILF IVIVWGFPS L + IRECISK +GP S
Sbjct: 511 GDIIDLGTGNRIAATTVCYNLKRRYPKILFSNIVIVWGFPSQLSSKKIRECISKAFGPIS 570
Query: 421 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 480
V ++YH+DETAVFVQFS+ E+V+ FL LK +L+ DPISVLHPL+ LLEGGNTCAASYE
Sbjct: 571 VTTIYHLDETAVFVQFSKPELVADFLVLKETLETIQDPISVLHPLSVLLEGGNTCAASYE 630
Query: 481 TYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSD--KTKEHESLRKVKAVN---SDPSC 535
TYKEICSS +SKV+FADQAKAVGIKWKTKL+ES + KT+E ES K SDP+
Sbjct: 631 TYKEICSSPISKVMFADQAKAVGIKWKTKLIESKEKVKTQEDESFSKENGATDAASDPA- 689
Query: 536 GERTKNKNFDDVSNDSSYSQLSS 558
+++K + +DV ++ S ++S+
Sbjct: 690 -DKSKTRKIEDVIDNLSDDRISA 711
>gi|255563538|ref|XP_002522771.1| conserved hypothetical protein [Ricinus communis]
gi|223538009|gb|EEF39622.1| conserved hypothetical protein [Ricinus communis]
Length = 699
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/575 (63%), Positives = 447/575 (77%), Gaps = 18/575 (3%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FLAKYQFDFN CI EG+SYLSR QE++AL+ +N YED +L+ ++ D L +I
Sbjct: 136 LEFLAKYQFDFNTCILEGMSYLSRRQEEEALRRLNLRYEDSNLN------DVGDVPLASI 189
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
DILF+ERMK+RLSEW GLL+N G+ + S QF+TIF+KMRPA+ L+GFTSH
Sbjct: 190 TDILFSERMKNRLSEWRDGLLKN---GNGIGDS------QFQTIFYKMRPALCLSGFTSH 240
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL LIQLV RKHF++LAY+ G++S Q ++VYI+SE+DK +LMKEVKDE + AEM I
Sbjct: 241 QLKLIQLVTRKHFENLAYVGC-GQSSSLQELVVYIDSENDKDLLMKEVKDEYRKGAEMKI 299
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
K +IGFRHVIDLLSS +KLIVGHNCFLDIAHI+SKF GPLP TAEEF+S+VNKYFPHIID
Sbjct: 300 KNAIGFRHVIDLLSSAQKLIVGHNCFLDIAHIHSKFLGPLPPTAEEFVSAVNKYFPHIID 359
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGS-KSTHLALQPSVKVEVEVDDIRS 299
TKILLN+N++L QRMKKS TSLS AFS+LCPQ+A S K + A +P V VEV+VDD RS
Sbjct: 360 TKILLNANNVLLQRMKKSGTSLSAAFSLLCPQLATSSNKGINWASRPCVNVEVQVDDTRS 419
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT 359
SNW+SGVKHEAGYDAFMTGCVFAQAC+HLG+DFK +SSSENLAHNEKL++ +NLLY+SW
Sbjct: 420 SNWSSGVKHEAGYDAFMTGCVFAQACNHLGVDFKLKSSSENLAHNEKLQKLINLLYISWI 479
Query: 360 NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPT 419
N +II+L TGNR +ESL N + P ILF+ IV++W FPS LKA +IRECI K +G
Sbjct: 480 NWDIIDLRTGNRVAESLGFNYLRKQRPNILFKNIVLIWRFPSRLKAGEIRECICKAFGLN 539
Query: 420 SVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASY 479
SV S+YHVDETAVFVQFS+AE+VS+FL LK SLDR+NDPISVLHPL+KLL+GGNTCAA Y
Sbjct: 540 SVTSIYHVDETAVFVQFSKAELVSEFLVLKESLDRSNDPISVLHPLSKLLDGGNTCAADY 599
Query: 480 ETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESS-DKTKEHESLRKVKAVNSDPSCGER 538
ETYKEICSS +SKV FADQA AVGI WKTKLVES D +H+ + + S +
Sbjct: 600 ETYKEICSSPISKVRFADQAAAVGINWKTKLVESKIDAESQHQDSFYKEDARTTKSASTK 659
Query: 539 TKNKNFDDVSNDSSYSQLSSDEIIDSFYTREAKQI 573
N V +D + + D++IDSFY E ++I
Sbjct: 660 KSNAGDHSVIDDLLSGRSACDQVIDSFYAAEDQRI 694
>gi|147799285|emb|CAN76999.1| hypothetical protein VITISV_007764 [Vitis vinifera]
Length = 720
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/576 (61%), Positives = 442/576 (76%), Gaps = 22/576 (3%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLAKYQFDFNACI+EGVSYLSREQE++ L+ +NS +DE W ++KE+RDT L ++
Sbjct: 152 IDFLAKYQFDFNACIYEGVSYLSREQENEMLRCLNSECDDEMSLLWRNMKEVRDTPLVSV 211
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D+LF+ERMK+R +EW LL++R GS+ + ND KQQF+TIFFKMRPA+ LNGFT+H
Sbjct: 212 ADVLFSERMKNRFNEWRKELLQDRKGGSQFLETSNDMKQQFQTIFFKMRPALILNGFTAH 271
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL LIQLV++KHFKDL Y+R SG+ S S+ +IVYI+S++DK +LMKEVKD + +AEM I
Sbjct: 272 QLRLIQLVIKKHFKDLVYIRSSGDGSYSE-LIVYIDSDNDKNLLMKEVKDGLRREAEMKI 330
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
K ++GFRHVIDLLSSE+KLIVGHNC LDIAHIY+KFFGPLPLTAE+F+SS++KYFP++ID
Sbjct: 331 KTAVGFRHVIDLLSSEQKLIVGHNCLLDIAHIYNKFFGPLPLTAEDFVSSIHKYFPYMID 390
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TKILLN+N++L+ MK STSLSKAFS LCPQIA SK++ LA +P V+VEV+VDD+RSS
Sbjct: 391 TKILLNTNNVLKHLMKNGSTSLSKAFSSLCPQIASSSKNSGLAFKPWVEVEVQVDDMRSS 450
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
NWNSG KHEAGYDAFMTGCVFAQACS+LGIDFK+ SSS NLAHN+ L++HVN LY SW N
Sbjct: 451 NWNSGAKHEAGYDAFMTGCVFAQACSNLGIDFKKHSSSANLAHNKNLQKHVNHLYFSWVN 510
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
G+II+LSTGNR + + K YPKILF IVIVWGFPS L + IRECISKV+GP S
Sbjct: 511 GDIIDLSTGNRIAATAVCYNLKRRYPKILFSNIVIVWGFPSQLSSKKIRECISKVFGPIS 570
Query: 421 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 480
V +YH+DETAVFVQFS+ E+V+ FL P + SYE
Sbjct: 571 VTMIYHLDETAVFVQFSKPELVADFL--------------FCIPSQYCWKVETLVLPSYE 616
Query: 481 TYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSD--KTKEHESLRKVKAVN---SDPSC 535
TYKEICSS +SKV+FADQAKAVGIKWKTKL+ES + KT+E ES K SDP+
Sbjct: 617 TYKEICSSPISKVMFADQAKAVGIKWKTKLIESKEKVKTQEDESFSKENGATDAASDPA- 675
Query: 536 GERTKNKNFDDVSNDSSYSQLSSDEIIDSFYTREAK 571
+++K + +DV +D S ++S EIIDS Y + K
Sbjct: 676 -DKSKTRKIEDVIDDLSDDRISGSEIIDSLYAAQTK 710
>gi|224061228|ref|XP_002300380.1| predicted protein [Populus trichocarpa]
gi|222847638|gb|EEE85185.1| predicted protein [Populus trichocarpa]
Length = 675
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/513 (67%), Positives = 416/513 (81%), Gaps = 8/513 (1%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLAKY FDFN CI +GVSYLSR QED+AL+ +N YE+E + + RD L +I
Sbjct: 139 IDFLAKYHFDFNVCIRQGVSYLSRGQEDEALRLLNLRYENELSE------QARDVPLVSI 192
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF-NDSKQQFETIFFKMRPAISLNGFTS 119
DILF+ERMK+RL EW GLL++ GS+++ SF NDS QQF+ IF+KMRPA+SLNGFTS
Sbjct: 193 TDILFSERMKNRLREWRDGLLKDTSGGSQLEGSFLNDSNQQFQNIFYKMRPALSLNGFTS 252
Query: 120 HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
QL LIQ V +KHFKDLA +RV GE+SCSQ ++VY +SESD+ +L KEV D+ + AEM
Sbjct: 253 RQLRLIQSVTKKHFKDLASVRVEGESSCSQQLVVYTDSESDRDLLKKEVMDDYRRQAEMK 312
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
IKA+IGFRHVIDLLSSEKKLIVGHNCFLD+AHI+SKF GPLPL AEEF+ SVNK FP+II
Sbjct: 313 IKAAIGFRHVIDLLSSEKKLIVGHNCFLDLAHIHSKFLGPLPLEAEEFVYSVNKCFPYII 372
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSK-STHLALQPSVKVEVEVDDIR 298
DTKILLN+N+IL+QRMKKS TSLS AF LCPQIA SK S +L SVKVEV+VDDIR
Sbjct: 373 DTKILLNTNNILKQRMKKSKTSLSSAFLSLCPQIAFASKESCNLTFSSSVKVEVQVDDIR 432
Query: 299 SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSW 358
SS+W SGVKHEAGYDAFMTGCVFAQAC+ LGIDFK S SENLA NE+L++H NLLYLSW
Sbjct: 433 SSSWISGVKHEAGYDAFMTGCVFAQACNLLGIDFKLYSPSENLACNERLQKHANLLYLSW 492
Query: 359 TNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGP 418
NG+II+LSTG+RT+ESL K ILFE IV++WGFPS LK I++ ISKV+GP
Sbjct: 493 INGDIIDLSTGHRTAESLRCRDLKKSQTGILFENIVLIWGFPSKLKTAVIKDRISKVFGP 552
Query: 419 TSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAAS 478
TSV S+ +DETAVFVQFS+ ++V+ FL +K +L+R+ND SVLHPL+ +LEGGNTCAAS
Sbjct: 553 TSVTSICRLDETAVFVQFSKLKLVADFLVVKETLERSNDAFSVLHPLSTILEGGNTCAAS 612
Query: 479 YETYKEICSSTVSKVLFADQAKAVGIKWKTKLV 511
YETYK+ICSS SK+LFADQA+AVGI+WKTKLV
Sbjct: 613 YETYKDICSSPTSKLLFADQAEAVGIRWKTKLV 645
>gi|356524370|ref|XP_003530802.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Glycine max]
Length = 718
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/573 (58%), Positives = 430/573 (75%), Gaps = 5/573 (0%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
MDFLAKYQFDFNACIHEG+SYLSREQE +AL+ +NSTY+ LK +RD L +
Sbjct: 146 MDFLAKYQFDFNACIHEGISYLSREQEREALRSLNSTYDSSEWSDIGKLKNVRDIPLLST 205
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
DILF RMK++ EW GL + +++ ++Q DSK F+ FF+M PA+ LNGFTSH
Sbjct: 206 ADILFTARMKNKFGEWRDGLFQEQNQEDQIQGISKDSK--FQVTFFEMHPALRLNGFTSH 263
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL LIQLV+RKHFKDL+Y+ V+ E S SQ ++VY +S+ + +L+K+VK+E E I
Sbjct: 264 QLKLIQLVIRKHFKDLSYVSVNSETSGSQQLVVYTDSKDELNLLLKKVKEENHRAEEKKI 323
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+A++GFRHVIDLLSSE+KLIVG+NCFLDIAH+YSKF GPLP + +EF++SVNK FPHI+D
Sbjct: 324 QAAVGFRHVIDLLSSEQKLIVGYNCFLDIAHVYSKFIGPLPGSPDEFVASVNKCFPHIVD 383
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
T ILLN+N + Q++MK+S SL+ AF++ CPQIA GS+ST L VKV+VEVD RS
Sbjct: 384 TIILLNTNLMFQEKMKRSRKSLASAFTLFCPQIAAGSRSTDLGSLSHVKVDVEVDGSRSC 443
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
+WN G KHEAGYDAFMTGC+FAQ CS LGIDFK + SS LA NEKL+++VN LYLSW +
Sbjct: 444 SWNPGGKHEAGYDAFMTGCIFAQLCSDLGIDFKLRDSSNQLALNEKLQKYVNRLYLSWIH 503
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
G+II+L+TGN+ ++S S+ K YP ILFE IVI+WGFPS LKA ++RECISK +GPTS
Sbjct: 504 GDIIDLNTGNKVADSSPSHSLKKRYPTILFENIVIIWGFPSKLKANEVRECISKAFGPTS 563
Query: 421 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 480
V+SV+H+D TA FVQFS+ E+VS FL +K SL+R++ ISVLHPL+KLLEGGNTCAA+Y+
Sbjct: 564 VVSVFHLDATAAFVQFSKTELVSDFLLVKDSLERSDGAISVLHPLSKLLEGGNTCAANYD 623
Query: 481 TYKEICSSTVSKVLFADQAKAVGIKWKTKLVES--SDKTKEHESLR-KVKAVNSDPSCGE 537
TY EIC S +S+ LFADQAK VGIKWKTKL E + + +EHE+ + VN+ E
Sbjct: 624 TYNEICGSPLSEGLFADQAKKVGIKWKTKLTECKVASRGEEHENPSLQANDVNTAMKNVE 683
Query: 538 RTKNKNFDDVSNDSSYSQLSSDEIIDSFYTREA 570
+TK D + N SS Q+S+ EI DS EA
Sbjct: 684 KTKPNTIDQLGNASSRGQVSTFEIEDSSRVAEA 716
>gi|356569615|ref|XP_003552994.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Glycine max]
Length = 714
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/572 (59%), Positives = 433/572 (75%), Gaps = 7/572 (1%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
MDFLAKYQFDFNACIHEG+SYLSREQE KAL+ +NSTY+ E D LK++RD L +
Sbjct: 146 MDFLAKYQFDFNACIHEGISYLSREQERKALRSLNSTYDSEWSD-IGKLKDVRDIPLLSA 204
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
DILF RMK++ SEW GL + +++ ++Q NDSK F+ FF+M PA+ LN FTSH
Sbjct: 205 ADILFTARMKNKFSEWRDGLFQEQNQEDQIQGISNDSK--FQVTFFEMHPALRLNRFTSH 262
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL LIQL++RKHFKDL+Y+ V+ E S SQ ++VY + + + +L+K+VK+E EM I
Sbjct: 263 QLKLIQLLIRKHFKDLSYVSVNSEASGSQQLVVYTDLKDELNLLLKKVKEENHRAEEMKI 322
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+A++GFRHVIDLLSSE+KLIVG+NCFLDIAH+YSKF GPLP T EEF++SV+K FPHI+D
Sbjct: 323 QAAVGFRHVIDLLSSEQKLIVGYNCFLDIAHVYSKFIGPLPGTPEEFVASVSKCFPHIVD 382
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TKILL++N + Q++MK+S SL+ AF+ CPQIA GS+ST L VKV VEVDD RS
Sbjct: 383 TKILLSTNLMFQEKMKRSRKSLASAFTSFCPQIAAGSRSTDLGSLSHVKVNVEVDDSRSC 442
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
+W+ G KHEAGYDAFMTGC+FAQ CS LGIDFK SS+ LA NEKL+++VN LYLSW +
Sbjct: 443 SWSPGGKHEAGYDAFMTGCIFAQLCSDLGIDFKLHDSSKPLALNEKLQKYVNRLYLSWMH 502
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
+II+L+TGN+ ++S + K YPKI+FE IVI+WGF S LKA +IRECISKV+GPTS
Sbjct: 503 RDIIDLNTGNKVADSSLRSLTK-RYPKIMFENIVIIWGFSSKLKANEIRECISKVFGPTS 561
Query: 421 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 480
V+SV+H+D TA FVQFS+ E+VS FL +K SL+R+ ISVLHPL+KLLEGGNTC A+Y+
Sbjct: 562 VVSVFHLDATAAFVQFSKTELVSDFLLVKDSLERSGGAISVLHPLSKLLEGGNTCGANYD 621
Query: 481 TYKEICSSTVSKVLFADQAKAVGIKWKTKLVE--SSDKTKEHESLRKVKAVNSDPSCGER 538
TY+EIC S++S+ LFADQA+AVGIKWKTKL E + + KEHE+ VN+ ER
Sbjct: 622 TYREICGSSLSEGLFADQAEAVGIKWKTKLTEYKVASRGKEHENPSVQDNVNTVMKNVER 681
Query: 539 TKNKNFDDVSNDSSYSQLSSDEIIDSFYTREA 570
TK D + N S Q+S+ EI DS Y EA
Sbjct: 682 TKPNTIDQLGNAPSCGQVSTFEIEDS-YVAEA 712
>gi|449461041|ref|XP_004148252.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis
sativus]
gi|449524565|ref|XP_004169292.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis
sativus]
Length = 700
Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust.
Identities = 302/524 (57%), Positives = 397/524 (75%), Gaps = 5/524 (0%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
M+FLAKYQFDFNACI+EG+SYLSR ED A K +N Y DE LD+ ++ + D I
Sbjct: 153 MEFLAKYQFDFNACIYEGISYLSRAHEDAARKRLNFAYGDEMLDASSNVTNVMDKKRVGI 212
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
PD+LF ERMK+RL EW LL R+ + Q ND K+QF+TIFFKMRPA++L+ FTSH
Sbjct: 213 PDVLFKERMKNRLHEWRDRLLSERNMEFQGQEGSNDHKRQFQTIFFKMRPALTLSDFTSH 272
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
Q+ LIQLV++KHF+DL ++ V+ N+ Q ++V+++S DK++LM+EV +QK EM I
Sbjct: 273 QIKLIQLVIKKHFEDLCFVVVNDGNADLQQLVVFVDSRDDKELLMQEVNRDQKEVNEMKI 332
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+++IGFRHVIDLLSSEKKLIVGHNCFLD+ HI+ KF G LP T EEF+SS+ K+FP+I+D
Sbjct: 333 QSAIGFRHVIDLLSSEKKLIVGHNCFLDMLHIHRKFIGSLPSTTEEFVSSLGKHFPYIMD 392
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TKILLN N+IL +RM KS+TSLS AF +LCP IA S+ A V+VEV+VDD+RSS
Sbjct: 393 TKILLNGNNILIRRMNKSNTSLSSAFGLLCPHIAFSSQRVS-AWNSGVQVEVQVDDLRSS 451
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
WNSG HEAGYDAFMTGCVFAQAC +GIDF +S+SENL NE L++H+N LYLSW
Sbjct: 452 KWNSGDTHEAGYDAFMTGCVFAQACDLMGIDFVDRSTSENLLGNEILQKHINRLYLSWAR 511
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
G+II+LSTGN+ +ES + K H K+ F+ IV++WGFP++L A I+ CISK +G T+
Sbjct: 512 GDIIDLSTGNQVTESFTTRK---HRAKVSFQNIVLIWGFPTNLTARKIKACISKAFGQTN 568
Query: 421 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 480
V SV H+DE+AVFVQF++ EMVS+FLDLK L++ +DP+SVLHPL +L + T AA YE
Sbjct: 569 VSSVNHLDESAVFVQFTKPEMVSEFLDLKEKLEKRDDPLSVLHPLTELFDVRTTHAAGYE 628
Query: 481 TYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDK-TKEHESL 523
YK+ICSS +SK LF+DQA+AVGI KT ++S +K ++ H+++
Sbjct: 629 AYKKICSSPMSKHLFSDQAEAVGINRKTTSIKSEEKRSRMHQAV 672
>gi|297847952|ref|XP_002891857.1| Poly(A)-specific ribonuclease [Arabidopsis lyrata subsp. lyrata]
gi|297337699|gb|EFH68116.1| Poly(A)-specific ribonuclease [Arabidopsis lyrata subsp. lyrata]
Length = 689
Score = 593 bits (1528), Expect = e-166, Method: Compositional matrix adjust.
Identities = 301/532 (56%), Positives = 384/532 (72%), Gaps = 10/532 (1%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
MDFLAKYQFDFN CIHEG+SYLSR QE++A K + + +E + S E D L +
Sbjct: 150 MDFLAKYQFDFNTCIHEGISYLSRRQEEEASKRLEMLHGEEGIVS---SGETEDLKLVRL 206
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D LFA RM+ L+EW GLL + SE N S Q ET+F MRPA+SL GFTSH
Sbjct: 207 ADTLFAVRMEKMLNEWRSGLLHGGNASSEFPRISNGSTQSMETVFHHMRPALSLKGFTSH 266
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL ++ V+ KHF DL Y+ + ++SCSQ +VY +SESDK+ LMKE KDE+K AE I
Sbjct: 267 QLRVLNSVLGKHFGDLVYIHSNDKDSCSQGFVVYTDSESDKENLMKEAKDERKRLAERKI 326
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+++IGFR VIDLL+SEKKLIVGHNCFLDIAH+YSKF GPLP TAE+F++S+N +FP+I+D
Sbjct: 327 QSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVD 386
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TKILLN N +L QRMKKSSTSLS AFS LCPQI S+S+ LQ V ++VE+D++R S
Sbjct: 387 TKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCS 446
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
NWN+G KHEAGYDAFMTGC+FAQAC+HLG DFKQ S +N A NEKL +++N LYLSWT
Sbjct: 447 NWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDNFAQNEKLEKYINRLYLSWTR 506
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
G+IINL TG+ +++ +K K +E IV++W FP LKA +I+ECI K +G S
Sbjct: 507 GDIINLRTGHSNADNWRVSKFK-------YENIVLIWNFPRKLKAREIKECICKAFGSAS 559
Query: 421 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 480
V SVYHVD++AVFV F +E+V FL LK L+ ++ P+SVLHPL+K+LEGGNT AA YE
Sbjct: 560 VTSVYHVDDSAVFVLFKNSELVWDFLTLKRQLESSDGPVSVLHPLSKILEGGNTGAADYE 619
Query: 481 TYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTKEHESLRKVKAVNSD 532
YKEICSS +SK+LF+DQA+ VG+K +T+ + + E+ V SD
Sbjct: 620 AYKEICSSNISKILFSDQAETVGVKSRTRPDPQGETQRREENTVAVTHKASD 671
>gi|240254282|ref|NP_001077725.4| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
gi|78484002|dbj|BAE47490.1| polyA specific ribonuclease [Arabidopsis thaliana]
gi|332195191|gb|AEE33312.1| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
Length = 540
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 291/509 (57%), Positives = 382/509 (75%), Gaps = 10/509 (1%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
MDFLAKYQFDFN CIHEG+SYLSR +E++A K + + ++ +DS +E++ L +
Sbjct: 1 MDFLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELK---LVRL 57
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D+LFA RM+ L+EW GLL + SE N S Q ET+F MRPA+SL GFTSH
Sbjct: 58 ADVLFAARMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSH 117
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL ++ V+RKHF DL Y+ + ++S S++++VY +S+SDK+ LMKE KDE+K AE I
Sbjct: 118 QLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVYTDSDSDKENLMKEAKDERKRLAERKI 177
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+++IGFR VIDLL+SEKKLIVGHNCFLDIAH+YSKF GPLP TAE+F++S+N +FP+I+D
Sbjct: 178 QSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVD 237
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TKILLN N +L QRMKKSSTSLS AFS LCPQI S+S+ LQ V ++VE+D++R S
Sbjct: 238 TKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCS 297
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
NWN+G KHEAGYDAFMTGC+FAQAC+HLG DFKQ S ++ A NEKL +++N LYLSWT
Sbjct: 298 NWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWTR 357
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
G+II+L TG+ +++ +K K +E IV++W FP LKA I+ECI K +G S
Sbjct: 358 GDIIDLRTGHSNADNWRVSKFK-------YENIVLIWNFPRKLKARGIKECICKAFGSAS 410
Query: 421 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 480
V SVYHVD++AVFV F +E+V FL LK L+ ++ P+SVLHPL+K+LEGGNT AA YE
Sbjct: 411 VTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYE 470
Query: 481 TYKEICSSTVSKVLFADQAKAVGIKWKTK 509
YKEICSS VS+V+F+DQA+ VG+K +T+
Sbjct: 471 AYKEICSSHVSEVMFSDQAETVGVKSRTR 499
>gi|240254280|ref|NP_175983.5| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
gi|60390594|sp|Q9LG26.2|PARN_ARATH RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease; Short=AtPARN;
AltName: Full=Protein ABA hypersensitive germination 2
gi|65736526|dbj|BAD98514.1| poly(A)-specific ribonuclease [Arabidopsis thaliana]
gi|332195190|gb|AEE33311.1| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
Length = 689
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 291/509 (57%), Positives = 382/509 (75%), Gaps = 10/509 (1%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
MDFLAKYQFDFN CIHEG+SYLSR +E++A K + + ++ +DS +E++ L +
Sbjct: 150 MDFLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELK---LVRL 206
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D+LFA RM+ L+EW GLL + SE N S Q ET+F MRPA+SL GFTSH
Sbjct: 207 ADVLFAARMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSH 266
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL ++ V+RKHF DL Y+ + ++S S++++VY +S+SDK+ LMKE KDE+K AE I
Sbjct: 267 QLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVYTDSDSDKENLMKEAKDERKRLAERKI 326
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+++IGFR VIDLL+SEKKLIVGHNCFLDIAH+YSKF GPLP TAE+F++S+N +FP+I+D
Sbjct: 327 QSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVD 386
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TKILLN N +L QRMKKSSTSLS AFS LCPQI S+S+ LQ V ++VE+D++R S
Sbjct: 387 TKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCS 446
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
NWN+G KHEAGYDAFMTGC+FAQAC+HLG DFKQ S ++ A NEKL +++N LYLSWT
Sbjct: 447 NWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWTR 506
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
G+II+L TG+ +++ +K K +E IV++W FP LKA I+ECI K +G S
Sbjct: 507 GDIIDLRTGHSNADNWRVSKFK-------YENIVLIWNFPRKLKARGIKECICKAFGSAS 559
Query: 421 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 480
V SVYHVD++AVFV F +E+V FL LK L+ ++ P+SVLHPL+K+LEGGNT AA YE
Sbjct: 560 VTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYE 619
Query: 481 TYKEICSSTVSKVLFADQAKAVGIKWKTK 509
YKEICSS VS+V+F+DQA+ VG+K +T+
Sbjct: 620 AYKEICSSHVSEVMFSDQAETVGVKSRTR 648
>gi|78484000|dbj|BAE47489.1| polyA specific ribonuclease [Arabidopsis thaliana]
Length = 540
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 290/509 (56%), Positives = 381/509 (74%), Gaps = 10/509 (1%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
MDFLAKYQFDFN CIHEG+SYLSR +E++A K + + ++ +DS +E++ L +
Sbjct: 1 MDFLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELK---LVRL 57
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D+LFA RM+ L+EW GLL + SE N S Q ET+F MRPA+SL GFTSH
Sbjct: 58 ADVLFAARMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSH 117
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL ++ V+RKHF DL Y+ + ++S S++++VY +S+SDK+ LMKE KDE+K AE I
Sbjct: 118 QLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVYTDSDSDKENLMKEAKDERKRLAERKI 177
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+++IGFR VIDLL+SEKKLIVGHNCFLDIAH+YSKF GPLP TAE+F++S+N +FP+I+D
Sbjct: 178 QSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVD 237
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TKILLN N +L QRMKKSSTSLS AFS LCPQI S+S+ LQ V ++VE+D++R S
Sbjct: 238 TKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCS 297
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
NWN+G KHEAGYDAFMTGC+FAQAC+HLG DFKQ S ++ A NEKL +++N LYLSWT
Sbjct: 298 NWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWTR 357
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
+II+L TG+ +++ +K K +E IV++W FP LKA I+ECI K +G S
Sbjct: 358 XDIIDLRTGHSNADNWRVSKFK-------YENIVLIWNFPRKLKARGIKECICKAFGSAS 410
Query: 421 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 480
V SVYHVD++AVFV F +E+V FL LK L+ ++ P+SVLHPL+K+LEGGNT AA YE
Sbjct: 411 VTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYE 470
Query: 481 TYKEICSSTVSKVLFADQAKAVGIKWKTK 509
YKEICSS VS+V+F+DQA+ VG+K +T+
Sbjct: 471 AYKEICSSHVSEVMFSDQAETVGVKSRTR 499
>gi|116310355|emb|CAH67368.1| OSIGBa0128P10.2 [Oryza sativa Indica Group]
Length = 702
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 253/505 (50%), Positives = 350/505 (69%), Gaps = 13/505 (2%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLAKYQFDFN C EG+ YLSR QE++AL+ + + + +E+ ++ +E D L +
Sbjct: 133 IDFLAKYQFDFNTCFREGIYYLSRTQEEEALQKLYTLHNNETSAYPNTSEEEEDAPLKSA 192
Query: 61 PDILFAERMKDRLSEWLGGLLRNR--DEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
D+LF ERMK + +EW ++ N+ D+ F D QF+T+FFKMRPAI LNGFT
Sbjct: 193 ADVLFTERMKIKFNEWRNSIVSNQRVDDHRSENFKFAD---QFQTVFFKMRPAIMLNGFT 249
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
SHQL LI+ ++R HF+DL Y+ E+ S+ +VY ++ DK LMK V+++ E
Sbjct: 250 SHQLKLIRQILRTHFRDLVYVCTFLEDGVSEKRVVYTDTNEDKISLMKNVREDLLKSREA 309
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+K+++G RHVIDLL+SE+KLIVGH+CFLDIA IYSKF GPLP + EEF S+N+ FPH+
Sbjct: 310 KVKSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYSKFVGPLPSSMEEFALSINRMFPHM 369
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQI-ALGSKSTHLALQPSVKVEVEVDDI 297
DT+ L++ N +Q RM+ S SLS AFS+LCP + A KS+ L PSV++EVE D+
Sbjct: 370 ADTRHLMSVNDAVQYRMRHKSKSLSSAFSLLCPALHAPDEKSSTL---PSVRIEVEADET 426
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + SG KHEAGYDAFMTGCVF Q C++ GI F+Q S E+LA N L++H+NLL
Sbjct: 427 VLSCFTSGAKHEAGYDAFMTGCVFVQLCAYHGIKFEQLSPLEDLATNINLKKHINLLPPC 486
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
W +G +++LSTG T A KR+ YP +++ ++++WGF S ++ DI++CI KV+G
Sbjct: 487 WNSGTVLDLSTG--TERPDAGYKRR--YPAAVYDNVILIWGFQSKVRPKDIKDCICKVFG 542
Query: 418 PTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAA 477
SV SV+ +D TAV VQFS+ E V+ FLDLK +L+ + ISVLHPL+ +LEGG T AA
Sbjct: 543 RASVTSVFPIDSTAVLVQFSKQESVNDFLDLKATLESADSAISVLHPLSTILEGGKTRAA 602
Query: 478 SYETYKEICSSTVSKVLFADQAKAV 502
Y+TY++IC S+VSK FADQA+AV
Sbjct: 603 KYDTYRDICRSSVSKFSFADQAEAV 627
>gi|116309728|emb|CAH66773.1| OSIGBa0115M15.11 [Oryza sativa Indica Group]
Length = 703
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 253/505 (50%), Positives = 350/505 (69%), Gaps = 13/505 (2%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLAKYQFDFN C EG+ YLSR QE++AL+ + + + +E+ ++ +E D L +
Sbjct: 134 IDFLAKYQFDFNTCFREGIYYLSRTQEEEALQKLYTLHNNETSAYPNTSEEEEDAPLKSA 193
Query: 61 PDILFAERMKDRLSEWLGGLLRNR--DEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
D+LF ERMK + +EW ++ N+ D+ F D QF+T+FFKMRPAI LNGFT
Sbjct: 194 ADVLFTERMKIKFNEWRNSIVSNQRVDDHRSENFKFAD---QFQTVFFKMRPAIMLNGFT 250
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
SHQL LI+ ++R HF+DL Y+ E+ S+ +VY ++ DK LMK V+++ E
Sbjct: 251 SHQLKLIRQILRTHFRDLVYVCTFLEDGVSEKRVVYTDTNEDKISLMKNVREDLLKSREA 310
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+K+++G RHVIDLL+SE+KLIVGH+CFLDIA IYSKF GPLP + EEF S+N+ FPH+
Sbjct: 311 KVKSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYSKFVGPLPSSMEEFALSINRMFPHM 370
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQI-ALGSKSTHLALQPSVKVEVEVDDI 297
DT+ L++ N +Q RM+ S SLS AFS+LCP + A KS+ L PSV++EVE D+
Sbjct: 371 ADTRHLMSVNDAVQYRMRHKSKSLSSAFSLLCPALHAPDEKSSTL---PSVRIEVEADET 427
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + SG KHEAGYDAFMTGCVF Q C++ GI F+Q S E+LA N L++H+NLL
Sbjct: 428 VLSCFTSGAKHEAGYDAFMTGCVFVQLCAYHGIKFEQLSPLEDLATNINLKKHINLLPPC 487
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
W +G +++LSTG T A KR+ YP +++ ++++WGF S ++ DI++CI KV+G
Sbjct: 488 WNSGTVLDLSTG--TERPDAGYKRR--YPAAVYDNVILIWGFQSKVRPKDIKDCICKVFG 543
Query: 418 PTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAA 477
SV SV+ +D TAV VQFS+ E V+ FLDLK +L+ + ISVLHPL+ +LEGG T AA
Sbjct: 544 RASVTSVFPIDSTAVLVQFSKQESVNDFLDLKATLESADSAISVLHPLSTILEGGKTRAA 603
Query: 478 SYETYKEICSSTVSKVLFADQAKAV 502
Y+TY++IC S+VSK FADQA+AV
Sbjct: 604 KYDTYRDICRSSVSKFSFADQAEAV 628
>gi|222629021|gb|EEE61153.1| hypothetical protein OsJ_15114 [Oryza sativa Japonica Group]
Length = 893
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 253/505 (50%), Positives = 350/505 (69%), Gaps = 13/505 (2%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLAKYQFDFN C EG+ YLSR QE++AL+ + + + +E+ ++ +E D L +
Sbjct: 324 IDFLAKYQFDFNTCFREGIYYLSRTQEEEALQKLYTLHNNETSAYPNTSEEEEDAPLKSA 383
Query: 61 PDILFAERMKDRLSEWLGGLLRNR--DEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
D+LF ERMK + +EW ++ N+ D+ F D QF+T+FFKMRPAI LNGFT
Sbjct: 384 ADVLFTERMKIKFNEWRNSIVSNQRVDDHRSENFKFAD---QFQTVFFKMRPAIMLNGFT 440
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
SHQL LI+ ++R HF+DL Y+ E+ S+ +VY ++ DK LMK V+++ E
Sbjct: 441 SHQLKLIRQILRTHFRDLVYVCTFLEDGVSEKRVVYTDTNEDKISLMKNVREDLLKSREA 500
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+K+++G RHVIDLL+SE+KLIVGH+CFLDIA IYSKF GPLP + EEF S+N+ FPH+
Sbjct: 501 KVKSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYSKFVGPLPSSMEEFALSINRMFPHM 560
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQI-ALGSKSTHLALQPSVKVEVEVDDI 297
DT+ L++ N +Q RM+ S SLS AFS+LCP + A KS+ L PSV++EVE D+
Sbjct: 561 ADTRHLMSVNDAVQYRMRHKSKSLSSAFSLLCPALHAPDEKSSTL---PSVRIEVEADET 617
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + SG KHEAGYDAFMTGCVF Q C++ GI F+Q S E+LA N L++H+NLL
Sbjct: 618 VLSCFTSGAKHEAGYDAFMTGCVFVQLCAYHGIKFEQLSPLEDLATNINLKKHINLLPPC 677
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
W +G +++LSTG T A KR+ YP +++ ++++WGF S ++ DI++CI KV+G
Sbjct: 678 WNSGTVLDLSTG--TERPDAGYKRR--YPAAVYDNVILIWGFQSKVRPKDIKDCICKVFG 733
Query: 418 PTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAA 477
SV SV+ +D TAV VQFS+ E V+ FLDLK +L+ + ISVLHPL+ +LEGG T AA
Sbjct: 734 RASVTSVFPIDSTAVLVQFSKQESVNDFLDLKATLESADSAISVLHPLSTILEGGKTRAA 793
Query: 478 SYETYKEICSSTVSKVLFADQAKAV 502
Y+TY++IC S+VSK FADQA+AV
Sbjct: 794 KYDTYRDICRSSVSKFSFADQAEAV 818
>gi|218195015|gb|EEC77442.1| hypothetical protein OsI_16244 [Oryza sativa Indica Group]
Length = 931
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 253/505 (50%), Positives = 350/505 (69%), Gaps = 13/505 (2%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLAKYQFDFN C EG+ YLSR QE++AL+ + + + +E+ ++ +E D L +
Sbjct: 362 IDFLAKYQFDFNTCFREGIYYLSRTQEEEALQKLYTLHNNETSAYPNTSEEEEDAPLKSA 421
Query: 61 PDILFAERMKDRLSEWLGGLLRNR--DEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
D+LF ERMK + +EW ++ N+ D+ F D QF+T+FFKMRPAI LNGFT
Sbjct: 422 ADVLFTERMKIKFNEWRNSIVSNQRVDDHRSENFKFAD---QFQTVFFKMRPAIMLNGFT 478
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
SHQL LI+ ++R HF+DL Y+ E+ S+ +VY ++ DK LMK V+++ E
Sbjct: 479 SHQLKLIRQILRTHFRDLVYVCTFLEDGVSEKRVVYTDTNEDKISLMKNVREDLLKSREA 538
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+K+++G RHVIDLL+SE+KLIVGH+CFLDIA IYSKF GPLP + EEF S+N+ FPH+
Sbjct: 539 KVKSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYSKFVGPLPSSMEEFALSINRMFPHM 598
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQI-ALGSKSTHLALQPSVKVEVEVDDI 297
DT+ L++ N +Q RM+ S SLS AFS+LCP + A KS+ L PSV++EVE D+
Sbjct: 599 ADTRHLMSVNDAVQYRMRHKSKSLSSAFSLLCPALHAPDEKSSTL---PSVRIEVEADET 655
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + SG KHEAGYDAFMTGCVF Q C++ GI F+Q S E+LA N L++H+NLL
Sbjct: 656 VLSCFTSGAKHEAGYDAFMTGCVFVQLCAYHGIKFEQLSPLEDLATNINLKKHINLLPPC 715
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
W +G +++LSTG T A KR+ YP +++ ++++WGF S ++ DI++CI KV+G
Sbjct: 716 WNSGTVLDLSTG--TERPDAGYKRR--YPAAVYDNVILIWGFQSKVRPKDIKDCICKVFG 771
Query: 418 PTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAA 477
SV SV+ +D TAV VQFS+ E V+ FLDLK +L+ + ISVLHPL+ +LEGG T AA
Sbjct: 772 RASVTSVFPIDSTAVLVQFSKQESVNDFLDLKATLESADSAISVLHPLSTILEGGKTRAA 831
Query: 478 SYETYKEICSSTVSKVLFADQAKAV 502
Y+TY++IC S+VSK FADQA+AV
Sbjct: 832 KYDTYRDICRSSVSKFSFADQAEAV 856
>gi|242076112|ref|XP_002447992.1| hypothetical protein SORBIDRAFT_06g019420 [Sorghum bicolor]
gi|241939175|gb|EES12320.1| hypothetical protein SORBIDRAFT_06g019420 [Sorghum bicolor]
Length = 719
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 247/515 (47%), Positives = 352/515 (68%), Gaps = 6/515 (1%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLAKYQFDFN C EG+SYLSR QE++AL+ N+ + ++ S + +E D L +
Sbjct: 157 IDFLAKYQFDFNTCFREGISYLSRAQEEEALQKFNTLHHGQTATSSTNSEEDGDIPLKSA 216
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
DILF ERMK EW ++ + + + QF+T+FFKMRPAI LNGF+SH
Sbjct: 217 SDILFTERMKMNFKEWRDVIVSKPMVDNHLSVNIKCGAGQFQTVFFKMRPAIMLNGFSSH 276
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL LIQ V+RK+F+DL ++ GE+ S+ +VY +++ D+ +LMK+V+++Q + E +
Sbjct: 277 QLKLIQQVLRKNFRDLVFVCTFGEDDTSEKKVVYSDTDEDRMLLMKDVQEDQLKNREERV 336
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
K++IG RHVIDLLSSE+KLI+GH+CFLDIA +YSKF GPLP + +EF S +K FPHI D
Sbjct: 337 KSAIGIRHVIDLLSSERKLIIGHSCFLDIAQVYSKFVGPLPSSIKEFALSFHKIFPHIAD 396
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
T+ LL+ N +Q+ MK+ S SLS AFS+LCP A S + + V +EVE D+ SS
Sbjct: 397 TRHLLSVNQAVQELMKQKSKSLSSAFSLLCP--ASYSSAEKASSHSPVTIEVEGDETTSS 454
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
++ SG KHEAGYDA+MTGC+FAQ C++LGI F+Q S ++LA N +L++H+N L SW +
Sbjct: 455 SFISGAKHEAGYDAYMTGCIFAQLCAYLGIKFEQFSPLDDLATNTRLQKHINFLSPSWNS 514
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
G +I+LSTG + YP +++ IV++WGF S ++ +I++CI KV+G S
Sbjct: 515 GTVIDLSTGMERPDP----GYMRRYPAAVYDNIVVIWGFMSKVRPKEIKDCICKVFGSGS 570
Query: 421 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 480
V +V+ +D TA VQF + E V+ FLDLK +L+R + + +LHPL+ +LEGG T AA Y+
Sbjct: 571 VTTVFSIDSTAALVQFKKQESVNDFLDLKSALERADSAVLILHPLSTILEGGQTRAAKYD 630
Query: 481 TYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSD 515
TY++ICSS+ SK LFADQA+AV K + E+ D
Sbjct: 631 TYRDICSSSESKSLFADQAEAVCATSKNQFKENVD 665
>gi|293331279|ref|NP_001169499.1| uncharacterized protein LOC100383372 [Zea mays]
gi|224029697|gb|ACN33924.1| unknown [Zea mays]
gi|413918598|gb|AFW58530.1| hypothetical protein ZEAMMB73_225129 [Zea mays]
Length = 693
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 249/515 (48%), Positives = 350/515 (67%), Gaps = 6/515 (1%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FLAKYQFDFN C EG+SYLSR QE++AL+ N + ++ S + +E D L +
Sbjct: 149 IEFLAKYQFDFNTCFREGISYLSRAQEEEALQKFNMLHHGRTVTSSTNSEEDGDMPLKSA 208
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
DILF ERMK EW + + + + QF+T+FFKMRPAI LNGF+SH
Sbjct: 209 SDILFTERMKMNFKEWRDAIASKPMVDNHLSGNIKCGSGQFQTVFFKMRPAIILNGFSSH 268
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL LIQ V+RK+F+DL ++ GE+ S+ +VY +++ D+ +LMK+V+++ + E I
Sbjct: 269 QLKLIQQVLRKNFRDLIFVCTFGEDDTSEKKVVYSDTDEDRILLMKDVQEDLLKNREERI 328
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
K++IG RHVIDLLSSE+KLIVGH+CFLDIA +YSKF PLP + +EF S +K+FPHI D
Sbjct: 329 KSAIGIRHVIDLLSSERKLIVGHSCFLDIAQVYSKFVRPLPSSIKEFALSFHKFFPHIAD 388
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
T+ L++ N +Q+ MK S SLS AF +LCP A S + V +EVE D+ SS
Sbjct: 389 TRHLMSVNQAVQKLMKHKSKSLSSAFLLLCP--ASYSSVEKPSSHSPVTIEVEGDETMSS 446
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
+ SG KHEAGYDA+MTGC+FAQ C++LGI F+Q S +NLA N KL++H+N L SW +
Sbjct: 447 RFISGAKHEAGYDAYMTGCIFAQLCAYLGIQFEQFSPLDNLATNTKLQKHINFLSPSWNS 506
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
G +++LSTG T + + + YP +++ IV++WGF S ++ +I++CI KV+G S
Sbjct: 507 GTVLDLSTGMETPDPGYTRR----YPAAVYDNIVVIWGFLSKVRPKEIKDCICKVFGSGS 562
Query: 421 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 480
V +V+ +D TA VQF + E V+ FLDLK L+R + IS+LHPL+ +LEGG T AA Y+
Sbjct: 563 VTTVFSIDSTAALVQFKKQESVNDFLDLKAVLERADSAISILHPLSTILEGGQTRAAKYD 622
Query: 481 TYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSD 515
TY++ICSS+ SK LFADQA+AV K +L+E+ D
Sbjct: 623 TYRDICSSSESKYLFADQAEAVCATSKNQLIENVD 657
>gi|357167784|ref|XP_003581331.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Brachypodium
distachyon]
Length = 729
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/502 (48%), Positives = 343/502 (68%), Gaps = 8/502 (1%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLAKYQFDFN C HEG+SYLSR QE++AL+ +N Y D + S ++ +E D L +
Sbjct: 159 IDFLAKYQFDFNTCFHEGISYLSRAQEEEALQKLNVLYHD-GIASPNTSEE-EDVPLRST 216
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D+LF ERMK + EW ++ N + S QF+T+FFKM PAI LNGFTSH
Sbjct: 217 ADLLFTERMKIKFKEWRDVIISNPRMDNHWLECNKFSTHQFQTVFFKMHPAILLNGFTSH 276
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL LIQ V+RK FKDL Y+ GE++ S+ +VY + +D LMK+++++ E +
Sbjct: 277 QLKLIQQVLRKDFKDLMYISTFGEDNTSEKRVVYTDDSNDSVSLMKDLQEDLLRSREARV 336
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
K+++G RHVIDLL+SE+KLIVGH+CFLDIA +YSKF GPLP T +EF ++K P+I D
Sbjct: 337 KSAVGIRHVIDLLASERKLIVGHSCFLDIAQVYSKFIGPLPSTVKEFALGIHKILPYIAD 396
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
T+ L++++ +Q M++ S SLS FS+LCP A S + V++EVE D+ S
Sbjct: 397 TRHLMSASDSVQYLMRQKSKSLSSVFSLLCP--AFHSTVAEPSTLSPVRIEVEADETMLS 454
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
+ SG KHEAGYDAFMTGCVFAQ C HL + F+ +NLA N KL++++NLL S+ +
Sbjct: 455 CFASGAKHEAGYDAFMTGCVFAQLCDHLDVKFEHLPPRDNLAMNNKLQKYINLLSPSFNS 514
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
G ++LSTG ++ K YP +L++ +V++WG+ S L+ DI++CI KV+GP S
Sbjct: 515 GTSLDLSTGMERPDT----GYKRRYPTVLYDNVVLIWGYQSELRPRDIKDCICKVFGPAS 570
Query: 421 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 480
V +++ +D TAV VQFS+ E V+ F+DLK +L++ + ISVLHPL+ +LEGG T AA+Y+
Sbjct: 571 VTTIFSIDSTAVLVQFSKQESVNDFMDLKAALEKTDSAISVLHPLSTILEGGKTRAANYD 630
Query: 481 TYKEICSSTVSKVLFADQAKAV 502
TY++IC S+VSK FADQA+AV
Sbjct: 631 TYRDICGSSVSKYFFADQAEAV 652
>gi|413918597|gb|AFW58529.1| hypothetical protein ZEAMMB73_225129 [Zea mays]
Length = 686
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 243/515 (47%), Positives = 343/515 (66%), Gaps = 13/515 (2%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FLAKYQFDFN C E QE++AL+ N + ++ S + +E D L +
Sbjct: 149 IEFLAKYQFDFNTCFREA-------QEEEALQKFNMLHHGRTVTSSTNSEEDGDMPLKSA 201
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
DILF ERMK EW + + + + QF+T+FFKMRPAI LNGF+SH
Sbjct: 202 SDILFTERMKMNFKEWRDAIASKPMVDNHLSGNIKCGSGQFQTVFFKMRPAIILNGFSSH 261
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL LIQ V+RK+F+DL ++ GE+ S+ +VY +++ D+ +LMK+V+++ + E I
Sbjct: 262 QLKLIQQVLRKNFRDLIFVCTFGEDDTSEKKVVYSDTDEDRILLMKDVQEDLLKNREERI 321
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
K++IG RHVIDLLSSE+KLIVGH+CFLDIA +YSKF PLP + +EF S +K+FPHI D
Sbjct: 322 KSAIGIRHVIDLLSSERKLIVGHSCFLDIAQVYSKFVRPLPSSIKEFALSFHKFFPHIAD 381
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
T+ L++ N +Q+ MK S SLS AF +LCP A S + V +EVE D+ SS
Sbjct: 382 TRHLMSVNQAVQKLMKHKSKSLSSAFLLLCP--ASYSSVEKPSSHSPVTIEVEGDETMSS 439
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
+ SG KHEAGYDA+MTGC+FAQ C++LGI F+Q S +NLA N KL++H+N L SW +
Sbjct: 440 RFISGAKHEAGYDAYMTGCIFAQLCAYLGIQFEQFSPLDNLATNTKLQKHINFLSPSWNS 499
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
G +++LSTG T + + + YP +++ IV++WGF S ++ +I++CI KV+G S
Sbjct: 500 GTVLDLSTGMETPDPGYTRR----YPAAVYDNIVVIWGFLSKVRPKEIKDCICKVFGSGS 555
Query: 421 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 480
V +V+ +D TA VQF + E V+ FLDLK L+R + IS+LHPL+ +LEGG T AA Y+
Sbjct: 556 VTTVFSIDSTAALVQFKKQESVNDFLDLKAVLERADSAISILHPLSTILEGGQTRAAKYD 615
Query: 481 TYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSD 515
TY++ICSS+ SK LFADQA+AV K +L+E+ D
Sbjct: 616 TYRDICSSSESKYLFADQAEAVCATSKNQLIENVD 650
>gi|215697086|dbj|BAG91080.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 502
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/437 (50%), Positives = 304/437 (69%), Gaps = 13/437 (2%)
Query: 69 MKDRLSEWLGGLLRNR--DEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQ 126
MK + +EW ++ N+ D+ F D QF+T+FFKMRPAI LNGFTSHQL LI+
Sbjct: 1 MKIKFNEWRNSIVSNQRVDDHRSENFKFAD---QFQTVFFKMRPAIMLNGFTSHQLKLIR 57
Query: 127 LVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGF 186
++R HF+DL Y+ E+ S+ +VY ++ DK LMK V+++ E +K+++G
Sbjct: 58 QILRTHFRDLVYVCTFLEDGVSEKRVVYTDTNEDKISLMKNVREDLLKSREAKVKSAVGI 117
Query: 187 RHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLN 246
RHVIDLL+SE+KLIVGH+CFLDIA IYSKF GPLP + EEF S+N+ FPH+ DT+ L++
Sbjct: 118 RHVIDLLASERKLIVGHSCFLDIAQIYSKFVGPLPSSMEEFALSINRMFPHMADTRHLMS 177
Query: 247 SNSILQQRMKKSSTSLSKAFSVLCPQI-ALGSKSTHLALQPSVKVEVEVDDIRSSNWNSG 305
N +Q RM+ S SLS AFS+LCP + A KS+ L PSV++EVE D+ S + SG
Sbjct: 178 VNDAVQYRMRHKSKSLSSAFSLLCPALHAPDEKSSTL---PSVRIEVEADETVLSCFTSG 234
Query: 306 VKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIIN 365
KHEAGYDAFMTGCVF Q C++ GI F+Q S E+LA N L++H+NLL W +G +++
Sbjct: 235 AKHEAGYDAFMTGCVFVQLCAYHGIKFEQLSPLEDLATNINLKKHINLLPPCWNSGTVLD 294
Query: 366 LSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVY 425
LSTG T A KR+ YP +++ ++++WGF S ++ DI++CI KV+G SV SV+
Sbjct: 295 LSTG--TERPDAGYKRR--YPAAVYDNVILIWGFQSKVRPKDIKDCICKVFGRASVTSVF 350
Query: 426 HVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEI 485
+D TAV VQFS+ E V+ FLDLK +L+ + ISVLHPL+ +LEGG T AA Y+TY++I
Sbjct: 351 PIDSTAVLVQFSKQESVNDFLDLKATLESADSAISVLHPLSTILEGGKTRAAKYDTYRDI 410
Query: 486 CSSTVSKVLFADQAKAV 502
C S+VSK FADQA+AV
Sbjct: 411 CRSSVSKFSFADQAEAV 427
>gi|8778305|gb|AAF79314.1|AC002304_7 F14J16.11 [Arabidopsis thaliana]
Length = 660
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 201/375 (53%), Positives = 264/375 (70%), Gaps = 19/375 (5%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
MDFLAKYQ +E++A K + + ++ +DS +E++ L +
Sbjct: 209 MDFLAKYQ----------------REEEEASKRLKMLHGEDGIDSSGETEELK---LVRL 249
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D+LFA RM+ L+EW GLL + SE N S Q ET+F MRPA+SL GFTSH
Sbjct: 250 ADVLFAARMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSH 309
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL ++ V+RKHF DL Y+ + ++S S++++VY +S+SDK+ LMKE KDE+K AE I
Sbjct: 310 QLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVYTDSDSDKENLMKEAKDERKRLAERKI 369
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+++IGFR VIDLL+SEKKLIVGHNCFLDIAH+YSKF GPLP TAE+F++S+N +FP+I+D
Sbjct: 370 QSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVD 429
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TKILLN N +L QRMKKSSTSLS AFS LCPQI S+S+ LQ V ++VE+D++R S
Sbjct: 430 TKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCS 489
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
NWN+G KHEAGYDAFMTGC+FAQAC+HLG DFKQ S ++ A NEKL +++N LYLSWT
Sbjct: 490 NWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWTR 549
Query: 361 GEIINLSTGNRTSES 375
+ + R ES
Sbjct: 550 ELVWDFLALKRQLES 564
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 63/78 (80%), Gaps = 1/78 (1%)
Query: 432 VFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVS 491
+++ ++R E+V FL LK L+ ++ P+SVLHPL+K+LEGGNT AA YE YKEICSS VS
Sbjct: 543 LYLSWTR-ELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYEAYKEICSSHVS 601
Query: 492 KVLFADQAKAVGIKWKTK 509
+V+F+DQA+ VG+K +T+
Sbjct: 602 EVMFSDQAETVGVKSRTR 619
>gi|57834081|emb|CAE05998.4| OSJNBa0016O02.8 [Oryza sativa Japonica Group]
Length = 622
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 199/479 (41%), Positives = 285/479 (59%), Gaps = 66/479 (13%)
Query: 26 QEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNR- 84
QE++AL+ + + + +E+ ++ +E D L + D+LF ERMK + +EW ++ N+
Sbjct: 133 QEEEALQKLYTLHNNETSAYPNTSEEEEDAPLKSAADVLFTERMKIKFNEWRNSIVSNQR 192
Query: 85 -DEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSG 143
D+ F D QF+T+FFKMRPAI LNGFTSHQL LI+ ++R HF+DL Y+
Sbjct: 193 VDDHRSENFKFAD---QFQTVFFKMRPAIMLNGFTSHQLKLIRQILRTHFRDLVYVCTFL 249
Query: 144 ENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGH 203
E+ S+ +VY ++ DK LMK V+++ E +K+++G RHVIDLL+SE+KLIVGH
Sbjct: 250 EDGVSEKRVVYTDTNEDKISLMKNVREDLLKSREAKVKSAVGIRHVIDLLASERKLIVGH 309
Query: 204 NCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLS 263
+CFLDIA IYSKF GPLP + EEF S+N+ FPH+ DT+ L++ N +Q R S LS
Sbjct: 310 SCFLDIAQIYSKFVGPLPSSMEEFALSINRMFPHMADTRHLMSVNDAVQYRYLASLQVLS 369
Query: 264 KAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQ 323
LC + H G+K E
Sbjct: 370 --MKQLC--------AYH-----------------------GIKFE-------------- 382
Query: 324 ACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKN 383
Q S E+LA N L++H+NLL W +G +++LSTG T A KR+
Sbjct: 383 ----------QLSPLEDLATNINLKKHINLLPPCWNSGTVLDLSTG--TERPDAGYKRR- 429
Query: 384 HYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVS 443
YP +++ ++++WGF S ++ DI++CI KV+G SV SV+ +D TAV VQFS+ E V+
Sbjct: 430 -YPAAVYDNVILIWGFQSKVRPKDIKDCICKVFGRASVTSVFPIDSTAVLVQFSKQESVN 488
Query: 444 KFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAV 502
FLDLK +L+ + ISVLHPL+ +LEGG T AA Y+TY++IC S+VSK FADQA+AV
Sbjct: 489 DFLDLKATLESADSAISVLHPLSTILEGGKTRAAKYDTYRDICRSSVSKFSFADQAEAV 547
>gi|302807724|ref|XP_002985556.1| hypothetical protein SELMODRAFT_424560 [Selaginella moellendorffii]
gi|300146762|gb|EFJ13430.1| hypothetical protein SELMODRAFT_424560 [Selaginella moellendorffii]
Length = 603
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 157/531 (29%), Positives = 260/531 (48%), Gaps = 78/531 (14%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKA---LKHVNSTYEDESLDSWHSLKEIRDTHL 57
++FLAK+QFDFNACI++G+SYLS EQE A LK ++ L+S+ +L + L
Sbjct: 113 LEFLAKHQFDFNACIYDGISYLSHEQEKLARHKLKLTDADGAPRELESFSAL----EIPL 168
Query: 58 FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGF 117
D++F+E ++ + EW +L+ + E + R + +
Sbjct: 169 NRTADVIFSESVRVQAGEWRDKVLQREKDAHEPEE----------------RLCLVVEVA 212
Query: 118 TSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE 177
+H+ L+ V+RK F+DL E+ + I++ S ++ +L+ + + +++ E
Sbjct: 213 GNHEANLVHQVLRKSFQDLVPFT---EDGAKKVKILFPRSVKERALLVGQWEKDRRSRLE 269
Query: 178 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 237
I +IGFR +ID L KK +VGHNCFLDIAHIY+KFF LPL+ EF SS++++FP
Sbjct: 270 NQIMDAIGFRQLIDALVESKKPVVGHNCFLDIAHIYNKFFATLPLSCSEFCSSIHQHFPC 329
Query: 238 IIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDI 297
I DTK LL ++S Q+ + K T+L FS ++ P+ KV++E
Sbjct: 330 IFDTKYLLKADSAAQEMLGKGGTTLGPVFS-------------NVGKLPN-KVQIEFGSS 375
Query: 298 RSSNWN-SGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ-----QSSSENLAHNEKLREHV 351
++ + +KHEAGYDA+MT VFA C + +D + + E L H
Sbjct: 376 SLCRYDGTEMKHEAGYDAYMTAAVFANICQFMKMDPANLPSLCEQAKEGEEERSGLGSHA 435
Query: 352 NLLYLSWTNGEIINLSTGN--------RTSESLASNKRKNHYPKILFECIVIVWGFPS-- 401
N LYL W +++LSTG ++S S+ K K+ + ++WG S
Sbjct: 436 NHLYLGWRGHFVLDLSTGQEATGPRSLKSSRSIEREKAKS---------VALMWGSGSTR 486
Query: 402 -------HLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDR 454
L+A D++ C + P + V +DE++ FV F R E + +
Sbjct: 487 SLEVDSRSLEA-DVKACFTAKSPPH--VEVVRIDESSAFVVFRRKESLESLVQ-AFECSG 542
Query: 455 NNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIK 505
++D + V + G A YE ++++C S +S D ++ ++
Sbjct: 543 HHDKVGVCDVSGLVARGWKI--ARYEFFEKLCESPLSTAKLTDAVTSMHLQ 591
>gi|302810647|ref|XP_002987014.1| hypothetical protein SELMODRAFT_446815 [Selaginella moellendorffii]
gi|300145179|gb|EFJ11857.1| hypothetical protein SELMODRAFT_446815 [Selaginella moellendorffii]
Length = 603
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 156/525 (29%), Positives = 254/525 (48%), Gaps = 82/525 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FLAK+QFDFNACI++G+SYLS EQE A + T D+ + +E+ + I
Sbjct: 113 LEFLAKHQFDFNACIYDGISYLSHEQEKLARHKLKLT------DADGAPRELESFSVLEI 166
Query: 61 P-----DILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 115
P D++F+E ++ + EW +L+ + E + R + +
Sbjct: 167 PLNRTADVIFSESVRVQAGEWRDKVLQREKDAQEPEE----------------RLCLVVE 210
Query: 116 GFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 175
+H+ L+ V+RK F+DL E+ + I++ S ++ +L+ + + +++
Sbjct: 211 VAGNHEANLVHQVLRKSFQDLVPFT---EDGAKKVKILFSRSVKERALLVGQWEKDRRSR 267
Query: 176 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
E I ++GFR +ID L KK +VGHNCFLDIAHIYSKFF LPL+ EF SS++++F
Sbjct: 268 LENQIMDAVGFRQLIDTLVESKKPVVGHNCFLDIAHIYSKFFATLPLSCSEFCSSIHQHF 327
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVD 295
P I DTK LL ++S Q+ + K T+L FS ++ P+ KV +E
Sbjct: 328 PCIFDTKYLLKADSAAQEMLGKGGTTLGPVFS-------------NVGKLPN-KVPIEFG 373
Query: 296 DIRSSNWN-SGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ-----QSSSENLAHNEKLRE 349
++ + +KHEAGYDA+MT VFA C + +D + + E L
Sbjct: 374 SSNLCRYDGTEMKHEAGYDAYMTAAVFANICQFVKMDPANLPSLCEQAKEGEEERSGLGS 433
Query: 350 HVNLLYLSWTNGEIINLSTGN--------RTSESLASNKRKNHYPKILFECIVIVWGFPS 401
H N LYL W +++LSTG ++S S+ K K+ + ++WG S
Sbjct: 434 HANHLYLGWRGHFVLDLSTGQEATGPRSLKSSRSIEREKAKS---------VALMWGSGS 484
Query: 402 ---------HLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSL 452
L+A D++ C + P + V +DE++ FV F R E + +
Sbjct: 485 TRSSEVDSRSLEA-DVKACFTAKSPPH--VEVVRIDESSAFVVFRRKESLESLVQ-AFEC 540
Query: 453 DRNNDPISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFAD 497
++D + V + G A YE ++++C S +S D
Sbjct: 541 SGHHDKVGVCDVSGLVARGWKI--ARYEFFEKLCESPLSTAKLTD 583
>gi|168026131|ref|XP_001765586.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683224|gb|EDQ69636.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 487
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 129/389 (33%), Positives = 211/389 (54%), Gaps = 40/389 (10%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSW-HSLKEIRDTHLFN 59
++FL K++FDFNACI++G+SYLS EQE A + S ++ S H+ EI L
Sbjct: 119 LEFLTKHRFDFNACIYDGISYLSHEQEAVARVLMGSVSVKQNFPSGVHNSSEI---PLTK 175
Query: 60 IPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS 119
D+ F E+++ ++ W LL NR Q+++ + +RP+++++ +
Sbjct: 176 PGDVAFVEKIRTQIGRWRDELLFNR--------------QKWQVVNENLRPSLNIDVTSH 221
Query: 120 HQLLLIQLVVRKHFKDLAYL---RVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDA 176
+Q L+Q +++ HF DL R +G + + ++Y+ + D +++E+ DE++
Sbjct: 222 YQSRLVQQIIKTHFPDLVAAVNARGNGPHDRIRIRVIYVSPKEDMSKVIQELADEERNAL 281
Query: 177 EMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP 236
E + ++GFR V+D ++ +VGHNC LD+ HIYSKF GPLP T+ EF SS+ + FP
Sbjct: 282 ETRVSNAVGFRKVLDAIAEAGLPVVGHNCILDMTHIYSKFVGPLPATSAEFSSSLRQQFP 341
Query: 237 HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQI---ALGSKSTHLAL-----QPSV 288
+IDTK LL + L+ + STSL+ F+ +C A+ S +
Sbjct: 342 CVIDTKYLLRAEPTLRGILASRSTSLAVVFTHICQVFADKAVASGRFYFGKGKILNNAFT 401
Query: 289 KVEVEVDD---IRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNE 345
KV VEV + ++G+KHEAG+DA+MTG VFAQAC L +D ++ +
Sbjct: 402 KVAVEVAEEFQRYGGTKDTGLKHEAGFDAYMTGSVFAQACHLLHVD---AATIRKIPDAV 458
Query: 346 KLRE-----HVNLLYLSWTNGEIINLSTG 369
K+ E + NLL L W +++L+TG
Sbjct: 459 KVGEQGFASYANLLALGWVGNMVLDLTTG 487
>gi|302772366|ref|XP_002969601.1| hypothetical protein SELMODRAFT_410403 [Selaginella moellendorffii]
gi|300163077|gb|EFJ29689.1| hypothetical protein SELMODRAFT_410403 [Selaginella moellendorffii]
Length = 648
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 148/509 (29%), Positives = 248/509 (48%), Gaps = 34/509 (6%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FLAK+ FDFNACI+ G+SYLSR++E K + EDE + + +
Sbjct: 139 LEFLAKHHFDFNACIYNGISYLSRKEEGKLRALLAKKGEDE----------LPEVSMRKT 188
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D++F+ER++ ++ W + + + + + S S E P++ +N
Sbjct: 189 SDLIFSERVRLQVGLWRASKIMAKHKAKQEESSGRSSMPDDEAPL----PSLVINVSDKR 244
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID-AEMS 179
Q L+ V +F DL + E +Q ++Y S S+ K+ ++ D+ K+D E
Sbjct: 245 QAKLVLKAVSSNFDDLVPMIEGNEKEATQVKVIYTGS-SEHKIALQADLDKAKLDLMEYD 303
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++GFR VID +S KK IVGHNC LD+AHIY+KF GPLP F + +++ FP +I
Sbjct: 304 VMEAVGFRQVIDAISESKKPIVGHNCVLDLAHIYNKFIGPLPDNYSGFCNVIHELFPAVI 363
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK +L +L R S+TSL +S + A K+T + +V VE+ D
Sbjct: 364 DTKYMLK---VL--RTSISTTSLYPVYSYYFGEDA--KKNTKMKAHSTVNVEIA--DGFH 414
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ--QSSSENLAHNEKLREHVNLLYLS 357
++ +KHEAG+DA+MTG +FAQ + + + S + L + E NLLY+
Sbjct: 415 KYSDAELKHEAGFDAYMTGAIFAQLWRTVVSNPTEFYALSKKILRGTHAISEFSNLLYMG 474
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYP-KILFECIVIVWGFPSHLKAWDIRECISKVY 416
W +++L TG S A +R+++ + + VIVW + +++ + +
Sbjct: 475 WAGHFVLDLKTGKEAKGSKALPERESYSARRPASDAAVIVWSQDPVGSSRQLQKLVKSCF 534
Query: 417 GPT---SVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGN 473
T S + V V E A F+ F +F S+ N L+ +A L
Sbjct: 535 EETQFSSEVEVIPVSENAAFLAFKSLRSSEEFSQALESIKTNRKK---LNTIAARLSSSG 591
Query: 474 TCAASYETYKEICSSTVSKVLFADQAKAV 502
A + T++++C S +S D +++
Sbjct: 592 LQGARFGTFEKLCKSELSTFNIGDAIQSI 620
>gi|302774905|ref|XP_002970869.1| hypothetical protein SELMODRAFT_451150 [Selaginella moellendorffii]
gi|300161580|gb|EFJ28195.1| hypothetical protein SELMODRAFT_451150 [Selaginella moellendorffii]
Length = 648
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 146/509 (28%), Positives = 246/509 (48%), Gaps = 34/509 (6%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FLAK+ FDFNACI+ G+SYLSR++E K + EDE + + +
Sbjct: 139 LEFLAKHHFDFNACIYNGISYLSRKEEGKLRALLAKKGEDE----------LPEVSMRKT 188
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D++F+ER++ ++ W + + + + + S S E P++ +N
Sbjct: 189 SDLIFSERVRLQVGLWRASKIMAKHKAKQEESSGRSSMPDDEAPL----PSLVINVSDKR 244
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID-AEMS 179
Q L+ V +F DL + E +Q ++Y S S+ K+ ++ D+ K+D E
Sbjct: 245 QAKLVLKAVSSNFDDLVPMIEDNEKEATQVKVIYTGS-SEHKIALQADLDKAKLDLMECD 303
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++GFR VID +S KK IVGHNC LD+AHIY+KF GPLP F + +++ FP +I
Sbjct: 304 VMEAVGFRQVIDAISESKKPIVGHNCVLDLAHIYNKFIGPLPDNYSGFCNVIHELFPAVI 363
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK +L +L R S+TSL +S + A + T + V VE+ D
Sbjct: 364 DTKYMLK---VL--RTSISTTSLYPVYSYYFGEDAKKNTKT----KAHSTVNVEIADGFH 414
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ--QSSSENLAHNEKLREHVNLLYLS 357
++ +KHEAG+DA+MTG +FAQ + + + S + L + E NLLY+
Sbjct: 415 KYSDAELKHEAGFDAYMTGAIFAQLWRTVVSNPTEFYALSKKILRGTHAISEFSNLLYMG 474
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYP-KILFECIVIVWGFPSHLKAWDIRECISKVY 416
W +++L TG S A +R+++ + + VIVW + +++ + +
Sbjct: 475 WAGHFVLDLKTGKEAKGSKALPERESYSARRPASDAAVIVWSQDPVGSSRQLQKLVKSCF 534
Query: 417 GPT---SVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGN 473
T S + V V E A F+ F +F +L+ L+ +A L
Sbjct: 535 EETQFSSEVEVIPVSENAAFLAFKSLRSSEEF---SQALESIKTKRKKLNTIAARLSSSG 591
Query: 474 TCAASYETYKEICSSTVSKVLFADQAKAV 502
A + T++++C S +S D +++
Sbjct: 592 LEGARFGTFEKLCKSELSTFNIGDAIQSI 620
>gi|255572662|ref|XP_002527264.1| ribonuclease, putative [Ricinus communis]
gi|223533357|gb|EEF35108.1| ribonuclease, putative [Ricinus communis]
Length = 624
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 129/484 (26%), Positives = 217/484 (44%), Gaps = 63/484 (13%)
Query: 9 FDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAER 68
FDFNAC+++G+SYLSR QE A + + + + + + T + D +F +R
Sbjct: 150 FDFNACVNDGISYLSRAQESAARVRMKNPFLAKDI--------VESTSTPGVADSVFVQR 201
Query: 69 MKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLV 128
+ R+ W + S E + RP I+++ + Q+ L+ +
Sbjct: 202 TRSRVKNWKNACTDTSSTDEALVKSLRKLVLGLEE--YNSRPCINIDVCSERQVHLVIEM 259
Query: 129 VRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFR 187
+++ DL L V + +Q V +V S+ D+ +L E+ Q ++ E + K GFR
Sbjct: 260 LQEFADDLVPLIVPAKGGGTQAVRVVLTSSKEDRDLLQMEL---QNLEDEQNKKIR-GFR 315
Query: 188 HVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNS 247
VIDL+S +K +V HN D+A I+SKF PLP + EEF S+ FP +ID L+
Sbjct: 316 EVIDLISGSEKPVVSHNSLNDLAFIHSKFLAPLPPSMEEFTCSLRLVFPQVIDVNHLMKE 375
Query: 248 NSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK 307
S L K T++ A S L K+ A V +E+ + N G
Sbjct: 376 ISPL-----KKVTNIPMATSYL--------KNWFFA---PVDMEIPFPAMV----NEGKI 415
Query: 308 HEAGYDAFMTGCVFAQACSHLGIDFKQ-QSSSENLAHNEKLREHVNLLYLSWTNGEIINL 366
H G++ +FA+ C L + QS+ +NLA + +VN+ + +
Sbjct: 416 H--GHNVMRICQLFAKLCYILKLAPNSIQSNEKNLA--SAIEAYVNIFSPYFPGPQ---- 467
Query: 367 STGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECIS---KVYGPTSVIS 423
+ +N R K+ + +V +WGF + A ++ + KV+ +
Sbjct: 468 EPTDEDVRIWTNNTR-----KVSCQDLVFLWGFRYRMSAGMLKSLLQQSHKVF--SEEFD 520
Query: 424 VYHVDETAVFVQFSRAEMVSKFLD-LKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETY 482
V VD++ V F + + LD LKGS + ++ PL +++ G AASY+TY
Sbjct: 521 VRFVDKSCAIVVFWEPGLSNTLLDVLKGSSE-------IVGPLREMVSEG-VRAASYDTY 572
Query: 483 KEIC 486
+C
Sbjct: 573 NRVC 576
>gi|224136934|ref|XP_002326981.1| predicted protein [Populus trichocarpa]
gi|222835296|gb|EEE73731.1| predicted protein [Populus trichocarpa]
Length = 626
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 128/496 (25%), Positives = 221/496 (44%), Gaps = 71/496 (14%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
+A+ FDFN+CI++G+SYLSREQE A + + +++ T ++ D
Sbjct: 143 MARQGFDFNSCINDGISYLSREQESTAKIQMGNPILAKNV--------TESTSTLSVADS 194
Query: 64 LFAERMKDRLSEWLGGL--LRNRDEGSEVQPSFNDS--KQQFETIFFKMRPAISLNGFTS 119
+F ER+K + W R EG+++Q + S K + RP ++++ +
Sbjct: 195 VFVERIKSHIKNWKKACKETSTRKEGNQIQDALVRSLRKLVLGNEEYDSRPCMNIDVCSE 254
Query: 120 HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVK-DEQKIDAE 177
Q L+ ++++ D+ L + + Q V +V S+ DK +L +++ DEQ++ +
Sbjct: 255 RQAQLVVEMLQEFADDVVPLIIPAKGGAMQAVRVVLTSSKEDKDLLQGKLQNDEQELKKK 314
Query: 178 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 237
+ GFR VIDL+S+ +K +V H D+ I+SKF PLP T +EF+ S+ FP
Sbjct: 315 VR-----GFREVIDLISASQKPVVSHGSLNDLTVIHSKFIAPLPPTVDEFMCSLRLAFPL 369
Query: 238 IIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDI 297
+ID L+ S L++ TS+ A S L + P + +E+ +
Sbjct: 370 VIDVNHLMKEISPLRK-----VTSIPVAISQL----------KNRFFTP-IDMEIPCQAM 413
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
N H G + +FA+ CS L ID S E + L + N+
Sbjct: 414 E----NEDTIH--GQNVVKICELFARLCSILKIDPAAVKSDEEKGAS-ALEAYANIFSPF 466
Query: 358 WT------NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIREC 411
T +GEI + RT + E +V +WGF + A ++
Sbjct: 467 CTASEEPIDGEIKIWTNNTRT---------------VSCEDMVFLWGFGDRVTAGILKSL 511
Query: 412 ISKVYGPTSV-ISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLE 470
+ + + S V VD + V F + + FL+ ++++ +D + PL +++
Sbjct: 512 LQESHEAFSKEFDVRLVDNSCAIVIFWQHGLTETFLN---TMNKCSD---MRGPLREMVS 565
Query: 471 GGNTCAASYETYKEIC 486
G AA YETY C
Sbjct: 566 EGLR-AAGYETYNRAC 580
>gi|356527283|ref|XP_003532241.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Glycine max]
Length = 619
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 131/497 (26%), Positives = 227/497 (45%), Gaps = 76/497 (15%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
+A+ FDFNAC++ G+SYLSR QE A + + SL+ ++ + + D
Sbjct: 137 MARQGFDFNACVYNGISYLSRAQESAARIRLGTALP--------SLRVMKSSSPSTVADT 188
Query: 64 LFAERMKDRLSEWLGGLL-----RNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
+F ER++ ++ W ++RDE E+ S + E F+ RP ++++ +
Sbjct: 189 VFVERIRSKVKYWRESCKSSDTNKSRDE--ELVNSLRNIVLGNEQ--FRSRPCMTVDVCS 244
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVKDEQKIDAE 177
Q+ LI +V + DL L + ++ V IV S+ DK +L +E+++ ++ ++
Sbjct: 245 ERQVQLILEMVLDYSDDLLPLPIPTKSGTIHAVRIVLANSKEDKDLLERELRNLEEEES- 303
Query: 178 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 237
K GFR VIDL+S+ +K ++ HNC D I+SKF PLP +EF+SS+ FP
Sbjct: 304 ---KKIRGFREVIDLISASQKPVISHNCLNDCTLIHSKFIAPLPPEIDEFVSSLCSVFPE 360
Query: 238 IIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDI 297
++D L+ + +++ T++ A S L + H V++E+ D
Sbjct: 361 VLDINYLMKKHGTMRK-----VTNIPSAISYL---------NNHFF----APVDLEIPD- 401
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFK-QQSSSENLAHNEKLREHVNLLYL 356
+ G H G A +F + CS L I +S +++LA +L + N+ +
Sbjct: 402 -QATVKEGKIH--GLTALRLSYLFMKLCSILKISPNVTESGNKHLA--PELEDFTNVFHP 456
Query: 357 SWT------NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRE 410
T NG + + T N K+ E +V +WGF + A ++
Sbjct: 457 FSTPIQDSFNGGDVGMWTNNTK--------------KVSCEHLVFLWGFKIGITAGMLKS 502
Query: 411 CISKVYGPTSV-ISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLL 469
+ + S V VD++ V F ++ + +FLD+ S + D L +L+
Sbjct: 503 LLRSSHDIFSREFDVKLVDKSCAIVVFWQSGVSKRFLDILNSEEIRGD-------LKELV 555
Query: 470 EGGNTCAASYETYKEIC 486
G SYETY IC
Sbjct: 556 SDGMR-VTSYETYNTIC 571
>gi|449502106|ref|XP_004161545.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like [Cucumis sativus]
Length = 610
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 130/492 (26%), Positives = 233/492 (47%), Gaps = 66/492 (13%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
+A+ FDF A +++G+SYLSR QE A + S ++++ ++ + ++ D
Sbjct: 136 MAREGFDFGAWVYDGISYLSRAQESIAKTQMGSQTLPPNINA------VKPSSELSVADT 189
Query: 64 LFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQF--ETIFFKMRPAISLNGFTSHQ 121
+F +R+K R+ W D S+ + + ++ + + RP+I ++ ++ Q
Sbjct: 190 IFVQRVKSRVKNWKDAY----DSSSKTSDALLSTLKKLIVGSEQYGSRPSIVIDVYSERQ 245
Query: 122 LLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIK 181
+LL+ ++++ DL + +S + +Q V + S + K+L++ K+ Q ++ + + K
Sbjct: 246 VLLVLELLKEFSDDLVPVVISAKGGGTQAVRAILTSSKEDKILLE--KELQYLEDKENKK 303
Query: 182 ASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDT 241
GFR VID++S+ +K IV +N D I+SKF PLP + +E+ SS++ FP + D
Sbjct: 304 FR-GFREVIDVISASQKPIVSYNSLHDFTFIHSKFLAPLPTSIDEYASSLHSVFPRVHDV 362
Query: 242 KILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPS-VKVEVEVDDIRSS 300
K L++ L + M S++ A+S L K+ + A PS + + VE
Sbjct: 363 KHLMSKIGGLSKPM-----SIAAAYSYL--------KNXYYA--PSYLDIPVEA------ 401
Query: 301 NWNSGVKHEA-GYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT 359
G H+ G++A +FAQ CS L ID S++N L E N+ S
Sbjct: 402 ---PGNDHKPHGHNAIRLCHLFAQVCSVLKIDLSGVQSNDNECLASMLDECSNVSSFS-- 456
Query: 360 NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPT 419
+ + + A R K+ +V +WG L A R + + G
Sbjct: 457 ---PYHCKPKDEDVKIWAQGVR-----KVSCRHLVFLWGLREGLTA---RLLKASLEGTH 505
Query: 420 SV----ISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTC 475
V V VD+ V FS+ ++ FLD +++ +N ++ L +++ G
Sbjct: 506 EVFCEEFDVRFVDKKCAIVVFSQPDLSETFLD---AINSDN----IVGSLREMVSEGLR- 557
Query: 476 AASYETYKEICS 487
AA YETYK+ICS
Sbjct: 558 AAGYETYKKICS 569
>gi|449462471|ref|XP_004148964.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis
sativus]
Length = 610
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 128/491 (26%), Positives = 229/491 (46%), Gaps = 64/491 (13%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
+A+ FDF A +++G+SYLSR QE A + S ++++ ++ + ++ D
Sbjct: 136 MAREGFDFGAWVYDGISYLSRAQESIAKTQMGSQTLPPNINA------VKPSSELSVADT 189
Query: 64 LFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQF--ETIFFKMRPAISLNGFTSHQ 121
+F +R+K R+ W D S+ + + ++ + + RP+I ++ ++ Q
Sbjct: 190 IFVQRVKSRVKNWKDAY----DSSSKTSDALLSTLKKLIVGSEQYGSRPSIVIDVYSERQ 245
Query: 122 LLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIK 181
+LL+ ++++ DL + +S + +Q V + S + K+L++ K+ Q ++ + + K
Sbjct: 246 VLLVLELLKEFSDDLVPVVISAKGGGTQAVRAILTSSKEDKILLE--KELQYLEDKENKK 303
Query: 182 ASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDT 241
GFR VID++S+ +K IV +N D I+SKF PLP + +E+ SS++ FP + D
Sbjct: 304 FR-GFREVIDVISASQKPIVSYNSLHDFTFIHSKFLAPLPTSIDEYASSLHSVFPRVHDV 362
Query: 242 KILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSN 301
K L++ L + M S++ A+S L Q S + + VE
Sbjct: 363 KHLMSKIGGLSKPM-----SIAAAYSYLKKQYYAPSY---------LDIPVEA------- 401
Query: 302 WNSGVKHEA-GYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
G H+ G++A +FAQ CS L ID S++N L E N+ S
Sbjct: 402 --PGNDHKPHGHNAIRLCHLFAQVCSVLKIDLSGVQSNDNECLASMLDECSNVSSFS--- 456
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
+ + + A R K+ +V +WG L A R + + G
Sbjct: 457 --PYHCKPKDEDVKIWAQGVR-----KVSCRHLVFLWGLREGLTA---RLLKASLEGTHE 506
Query: 421 V----ISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCA 476
V V VD+ V FS+ ++ FLD +++ +N ++ L +++ G A
Sbjct: 507 VFCEEFDVRFVDKKCAIVVFSQPDLSETFLD---AINSDN----IVGSLREMVSEGLR-A 558
Query: 477 ASYETYKEICS 487
A YETYK+ICS
Sbjct: 559 AGYETYKKICS 569
>gi|357141478|ref|XP_003572239.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Brachypodium
distachyon]
Length = 596
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 179/399 (44%), Gaps = 54/399 (13%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
+A+ FDFN CI++G+SYLSR QE A + + + L++ + + D
Sbjct: 123 MARDGFDFNMCIYDGISYLSRVQESLARQKIFIPH----------LRQPSPSPSTTVADS 172
Query: 64 LFAERMKDRLSEWLGGLLR--NRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQ 121
+F R+K R+ W G +GS V + K + RP++S++ + Q
Sbjct: 173 VFTTRIKSRIQHWRKGYAEPSKTADGSLVN---SLRKLILGGESYGSRPSMSIDVCSDRQ 229
Query: 122 LLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+ L+ + + DL L V + S+ V +++ SE DK +L+ ++ QK++ E S+
Sbjct: 230 VQLVLETINRVSDDLVPLVVPDKAGMSRAVRVIFTSSEEDKNLLLMDI---QKLEDEHSV 286
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
K GFR VIDLLSS +K I+ +NC D+ I++KF GPLP EF S+ F ++D
Sbjct: 287 KFR-GFREVIDLLSSSQKPIISYNCLNDLTMIHTKFIGPLPPNMHEFTCSLRMVFSSVVD 345
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
L L +++ ++ A S +L Q V +E+E+ +
Sbjct: 346 VGHLWREIGPL-----RNAKNIQAALS-------------YLQRQYFVPMEIEIP--QQD 385
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
NS K G + +FA+ L I K QS S H + + N+ Y
Sbjct: 386 GTNSVTK--GGENVLRITKLFAKLSMLLKISPKHQSQSGEQHHT--VEDFCNIFYPGCMA 441
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGF 399
GE S+ + K + + + ++ +WGF
Sbjct: 442 GE----------SDDVDCTKEPDITRTVSTDSVIFLWGF 470
>gi|9279724|dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 129/533 (24%), Positives = 229/533 (42%), Gaps = 98/533 (18%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
+A+ FDFN CI+EG+SYLSR QE + + +S+ S + DT
Sbjct: 139 MAREGFDFNICIYEGISYLSRAQESASKFLSENPILADSVTVSSSPATVADT-------- 190
Query: 64 LFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIF-----FKMRPAISLNGFT 118
+F R++ R+ W + D GS+ +D + + R ++++ +
Sbjct: 191 VFVGRIRSRVKNWRQSCI---DSGSKTGD--DDLVSSLRRLVLGSEQYGSRLCLTIDVCS 245
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVKDEQKIDAE 177
Q+ LI ++ + D+ L V+ ++ +Q V V++ S+ DK + +E+KD +K +
Sbjct: 246 ERQVQLILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKEEN- 304
Query: 178 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 237
+ GFR V+D +SS +K +V N D I++KF GPLP ++F SS++ FP+
Sbjct: 305 ---RRVRGFREVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPN 361
Query: 238 IIDTKILLNSNSILQQ--RMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVD 295
++D + S L + + +SL++ F+ V+VEV
Sbjct: 362 VVDLSQFMKEISPLSNISNLPAAMSSLNRFFA---------------------PVDVEV- 399
Query: 296 DIRSSNWNSGVKHEAGY-----DAFMTGCVFAQACSHLGIDFKQQSSSEN---LAHNEKL 347
+N VK + G+ +A M +FA+ C+ D S+E+ LA +
Sbjct: 400 ----ANQGCPVKLDEGHQSHGQNAVMISQLFAKLCTIQKSDLSTIQSNEDFQALASD--- 452
Query: 348 REHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWD 407
EH N + N N+ ++ S ++S E +V +WG + A
Sbjct: 453 -EHANSVTSCSKNAGDENVKVWSKNSRRVSS------------ENLVFIWGLGKKMTAAK 499
Query: 408 IRECISKVYGP-TSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLA 466
++ + K + V ++D ++ + F + FL + ++ + S+ +A
Sbjct: 500 LKNVLQKSHPVFAREFDVKYIDRSSAILVFWESGPSETFLSAVNNEEQLDG--SLREMVA 557
Query: 467 KLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTKE 519
+ L G A YETYK C +G W+ L ES DK E
Sbjct: 558 EGLRG-----AGYETYKRACR--------------LGF-WEADLAESLDKALE 590
>gi|15230837|ref|NP_189170.1| Poly(A)-specific ribonuclease PARN-like protein [Arabidopsis
thaliana]
gi|75162449|sp|Q8W4C3.1|PARNL_ARATH RecName: Full=Poly(A)-specific ribonuclease PARN-like; AltName:
Full=Polyadenylate-specific ribonuclease-like protein
gi|17065176|gb|AAL32742.1| Unknown protein [Arabidopsis thaliana]
gi|30725444|gb|AAP37744.1| At3g25430 [Arabidopsis thaliana]
gi|332643489|gb|AEE77010.1| Poly(A)-specific ribonuclease PARN-like protein [Arabidopsis
thaliana]
Length = 618
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 130/534 (24%), Positives = 231/534 (43%), Gaps = 100/534 (18%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
+A+ FDFN CI+EG+SYLSR QE + + +S+ S + DT
Sbjct: 139 MAREGFDFNICIYEGISYLSRAQESASKFLSENPILADSVTVSSSPATVADT-------- 190
Query: 64 LFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIF-----FKMRPAISLNGFT 118
+F R++ R+ W + D GS+ +D + + R ++++ +
Sbjct: 191 VFVGRIRSRVKNWRQSCI---DSGSKTGD--DDLVSSLRRLVLGSEQYGSRLCLTIDVCS 245
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVKDEQKIDAE 177
Q+ LI ++ + D+ L V+ ++ +Q V V++ S+ DK + +E+KD +K +
Sbjct: 246 ERQVQLILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKEEN- 304
Query: 178 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 237
+ GFR V+D +SS +K +V N D I++KF GPLP ++F SS++ FP+
Sbjct: 305 ---RRVRGFREVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPN 361
Query: 238 IIDTKILLNSNSILQQ--RMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVD 295
++D + S L + + +SL++ F+ V+VEV
Sbjct: 362 VVDLSQFMKEISPLSNISNLPAAMSSLNRFFA---------------------PVDVEV- 399
Query: 296 DIRSSNWNSGVKHEAGY-----DAFMTGCVFAQACSHLGIDFKQQSSSEN---LAHNEKL 347
+N VK + G+ +A M +FA+ C+ D S+E+ LA +
Sbjct: 400 ----ANQGCPVKLDEGHQSHGQNAVMISQLFAKLCTIQKSDLSTIQSNEDFQALASD--- 452
Query: 348 REHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWD 407
EH N + N N+ ++ S ++S E +V +WG + A
Sbjct: 453 -EHANSVTSCSKNAGDENVKVWSKNSRRVSS------------ENLVFIWGLGKKMTAAK 499
Query: 408 IRECISKVYGPTSV--ISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPL 465
++ + K + P V ++D ++ + F + FL + ++ + S+ +
Sbjct: 500 LKNVLQKSH-PVFAREFDVKYIDRSSAILVFWESGPSETFLSAVNNEEQLDG--SLREMV 556
Query: 466 AKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTKE 519
A+ L G A YETYK C ++ F W+ L ES DK E
Sbjct: 557 AEGLRG-----AGYETYKRAC-----RLGF----------WEADLAESLDKALE 590
>gi|242079291|ref|XP_002444414.1| hypothetical protein SORBIDRAFT_07g021600 [Sorghum bicolor]
gi|241940764|gb|EES13909.1| hypothetical protein SORBIDRAFT_07g021600 [Sorghum bicolor]
Length = 599
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 124/492 (25%), Positives = 228/492 (46%), Gaps = 76/492 (15%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
+A FDFN CI++G+SYLSR QE A + + ++ + L S + ++ D
Sbjct: 126 MANDGFDFNMCIYDGISYLSRVQESLARQKIFTSRPQQLLPSPST----------SVSDS 175
Query: 64 LFAERMKDRLSEWLGGLL--RNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQ 121
+F R+K ++ W G +D+GS V S + ET + RP++S++ + Q
Sbjct: 176 VFVNRIKSKILHWRKGYADPSKKDDGSLVS-SLSRLILGGET--YGSRPSMSIDVCSDRQ 232
Query: 122 LLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+ L+ V + DL L V + ++ V +++ S+ DK +L+ ++ QK++ E +
Sbjct: 233 VQLVLEAVNQISDDLVSLVVPHKAGAARFVRVIFTNSKEDKNLLLMDI---QKLEDEQNF 289
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
K GFR VIDLLSS +K I+ +NC D+ ++SKF PLP EF+ S+ F +++D
Sbjct: 290 KFR-GFREVIDLLSSSQKPIISYNCLNDMTMLHSKFIAPLPPNMHEFLCSLKMVFSNVVD 348
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
+ + L KA ++ Q AL ++L Q V +E+E+ +
Sbjct: 349 IS-----------HLWRQIGPLRKAKNI---QAAL----SYLQRQYCVPIEIEIP--QQD 388
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT- 359
+S K+E + +FA+ + L I + Q S + E+ N+ Y S
Sbjct: 389 GTSSVTKNEK--NVLRITKLFAKLSNLLKISPECQLQSHE--QCTAVEEYCNIFYPSCVV 444
Query: 360 -NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGP 418
+ N + + T+E ++++ I+ +WGF + ++E + G
Sbjct: 445 EGSDDANFAIESDTTEIVSTDN------------IIFLWGF----REKSVKELKPYLIGL 488
Query: 419 TSVIS----VYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNT 474
S V +D+T + F + ++ L + N++ S+ L++ L+
Sbjct: 489 HQAFSEDFEVKLLDKTCSALIFRDSNTATQLLK-----EINSEGPSLNRFLSEGLK---- 539
Query: 475 CAASYETYKEIC 486
AA +E Y+++C
Sbjct: 540 -AAGFEVYRKVC 550
>gi|357504877|ref|XP_003622727.1| Poly(A)-specific ribonuclease PARN-like protein [Medicago
truncatula]
gi|355497742|gb|AES78945.1| Poly(A)-specific ribonuclease PARN-like protein [Medicago
truncatula]
Length = 513
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 138/538 (25%), Positives = 225/538 (41%), Gaps = 110/538 (20%)
Query: 19 VSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLG 78
+SYLSR QE A + + S SL ++ + + D +F ER++ R+ W
Sbjct: 20 ISYLSRAQESVAKIRLGT--------SSPSLGVMKSSSPPTVADTVFIERIRSRIKHW-- 69
Query: 79 GLLRNRDEGSEVQPSFNDSKQQFETIF--------------------------------- 105
RN + S + S D K+ F
Sbjct: 70 ---RNTCKNSGTKTS-KDGKKIFSKFCTMRFFLGSPFILYHSFCADELINSIRNIISGSE 125
Query: 106 -FKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKML 164
FK+RP ++++ + Q+ LI +V DL L + + +Q V V + + K +
Sbjct: 126 QFKLRPCLNVDVCSDRQVQLILQMVVDFSDDLLPLVIPSKGGTTQAVRVVLTKSREDKEV 185
Query: 165 MKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 224
++ + + I+ GFR VIDL+S+ +K ++ HNC D I+SKF PLP
Sbjct: 186 LERELRSLEEEESKKIR---GFREVIDLISASQKPVISHNCLNDCTLIHSKFIAPLPSEV 242
Query: 225 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTH-LA 283
+EF+SS+ K FP +ID LL K S ++ K ++ + AL +TH LA
Sbjct: 243 DEFVSSLCKIFPKVIDVNYLL-----------KKSGTMKKVTNI---RNALSYMNTHFLA 288
Query: 284 LQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID-FKQQSSSENLA 342
L VE+E+ D N G G DA +F + CS L I +S + LA
Sbjct: 289 L-----VEMEIPD--QDTINKG--KIDGLDALRLSYLFMKLCSVLKISPVVTESGNRQLA 339
Query: 343 HNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSH 402
+L + N+ + N I S+ N +N RK + ++F +WGF
Sbjct: 340 --PQLEDFTNVFHSCSAN---IQESSCNEDVSVWTNNTRKANCEHLVF-----LWGFKFG 389
Query: 403 LKAWDIRECISKVYGP-TSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISV 461
+ A ++ + + + V VD++ FV F + FL++ N++ IS
Sbjct: 390 MTAGMLKSVLRESHDIFLEEFDVKFVDKSCAFVVFWEPGLSKDFLNV-----MNDEQIS- 443
Query: 462 LHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTKE 519
L +L+ G YETY+ +C +G+ W+ L ES +K+ E
Sbjct: 444 -GGLKELVSDGLR-VTGYETYRTMCR--------------LGL-WEIDLAESLEKSLE 484
>gi|222640635|gb|EEE68767.1| hypothetical protein OsJ_27469 [Oryza sativa Japonica Group]
Length = 601
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 111/400 (27%), Positives = 185/400 (46%), Gaps = 56/400 (14%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
+A FDFN CI++G+SYLSR QE A + + + ++++ + +I D
Sbjct: 128 MAHSGFDFNMCIYDGISYLSRAQESLARERIFIPH----------VRQLSSSPSTSIADS 177
Query: 64 LFAERMKDRLSEWLGGLLR--NRDEGSEVQPSFNDSKQQ-FETIFFKMRPAISLNGFTSH 120
+F R+K R+ W G + +GS V N +Q + + RP+ S++ +
Sbjct: 178 VFLTRIKSRIEHWRKGYTKPCKTADGSLV----NTLRQLILGSESYGSRPSFSIDVCSDR 233
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q+ L+ DL L V + ++ V +++ S DK +L+ ++K K++ E +
Sbjct: 234 QVQLVLEAANHISDDLVPLVVPDKAGTARAVRVIFTSSPEDKNLLLMDIK---KMEDEHN 290
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+K GFR VIDLLSS +K I+ +N D I+SKF PLP EF+ S+ F ++I
Sbjct: 291 LKFR-GFREVIDLLSSSQKPIISYNFLNDFTMIHSKFVAPLPPNLHEFMCSLRMVFSNVI 349
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
D M + L KA ++ Q AL ++L Q V ++VE I
Sbjct: 350 DI-----------SHMWREIGPLRKAKNI---QGAL----SYLQRQYFVPMDVE---IPQ 388
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT 359
+ N+ V ++G + +FA+ + L I Q+ S + H + E+ +LY S T
Sbjct: 389 QDGNNSVT-KSGENVLRITKLFAKLSNLLKISPNGQTHSGDKCHT--VEEYSYILYPSCT 445
Query: 360 NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGF 399
E SE S+ N + + +V +WGF
Sbjct: 446 AEE----------SEDDKSSNESNTTRSVRTDNVVFLWGF 475
>gi|297742825|emb|CBI35579.3| unnamed protein product [Vitis vinifera]
Length = 6458
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 124/439 (28%), Positives = 194/439 (44%), Gaps = 75/439 (17%)
Query: 106 FKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKML 164
++ RP ++L+ + HQ+ L+ V+ + F DL L + + +Q V ++ SE DK +L
Sbjct: 6070 YRSRPCVNLDVCSEHQVQLVLEVLGEFFDDLVPLLIPAKGGGTQAVRVILTSSEEDKDLL 6129
Query: 165 MKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 224
+E++D + E K GFR VIDL+S+ +K +V HN + A I+SKF PLP
Sbjct: 6130 KRELQDLE----EEQNKRVCGFREVIDLISASQKPVVSHNSLNEFAFIHSKFLSPLPPNM 6185
Query: 225 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 284
+EF+ S+ FPH++D L+ L K T+LS A S L +
Sbjct: 6186 DEFMCSLRMVFPHVLDVNHLMKEIGPL-----KKVTNLSAAASCLKRRFF---------- 6230
Query: 285 QPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ-QSSSENLAH 343
V +++E+ S N H G++ + A CS L I + QS +LA
Sbjct: 6231 ---VPIDMEIPHQAS---NEDKIH--GHNVLKISHLLANLCSILKITPEMIQSDGGHLA- 6281
Query: 344 NEKLREHVNLLYLSWTNGE-IINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSH 402
L + N+ + TN E I+ T ++ K+ E +V +WGF
Sbjct: 6282 -SALEGYANIFHPHSTNTEDPIDGGIKVWTDDTR----------KVSSEGLVFIWGFRGR 6330
Query: 403 LKAWDIRECISKVYGPTSVIS----VYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDP 458
+ A ++ + G SV S V VD + V F ++ + FL+ S +
Sbjct: 6331 MSAGGLKRLLQ---GSHSVFSEEFDVRMVDGSCAIVVFWQSGLSQTFLEAISS-----NW 6382
Query: 459 ISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTK 518
IS L L +++ G AA YETYK C +G W+ L +S DK
Sbjct: 6383 ISGL--LREMVSEGLR-AAGYETYKNACR--------------LGF-WEADLADSLDKAL 6424
Query: 519 E---HESLRKVKAVNSDPS 534
E H S +A + PS
Sbjct: 6425 EEPDHNSEADSEAKPTGPS 6443
>gi|359494766|ref|XP_003634836.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Vitis vinifera]
Length = 515
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 124/439 (28%), Positives = 194/439 (44%), Gaps = 75/439 (17%)
Query: 106 FKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKML 164
++ RP ++L+ + HQ+ L+ V+ + F DL L + + +Q V ++ SE DK +L
Sbjct: 127 YRSRPCVNLDVCSEHQVQLVLEVLGEFFDDLVPLLIPAKGGGTQAVRVILTSSEEDKDLL 186
Query: 165 MKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 224
+E++D + E K GFR VIDL+S+ +K +V HN + A I+SKF PLP
Sbjct: 187 KRELQDLE----EEQNKRVCGFREVIDLISASQKPVVSHNSLNEFAFIHSKFLSPLPPNM 242
Query: 225 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 284
+EF+ S+ FPH++D L+ L K T+LS A S L +
Sbjct: 243 DEFMCSLRMVFPHVLDVNHLMKEIGPL-----KKVTNLSAAASCLKRRFF---------- 287
Query: 285 QPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ-QSSSENLAH 343
V +++E+ S N H G++ + A CS L I + QS +LA
Sbjct: 288 ---VPIDMEIPHQAS---NEDKIH--GHNVLKISHLLANLCSILKITPEMIQSDGGHLA- 338
Query: 344 NEKLREHVNLLYLSWTNGE-IINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSH 402
L + N+ + TN E I+ T ++ K+ E +V +WGF
Sbjct: 339 -SALEGYANIFHPHSTNTEDPIDGGIKVWTDDTR----------KVSSEGLVFIWGFRGR 387
Query: 403 LKAWDIRECISKVYGPTSVIS----VYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDP 458
+ A ++ + G SV S V VD + V F ++ + FL+ S +
Sbjct: 388 MSAGGLKRLLQ---GSHSVFSEEFDVRMVDGSCAIVVFWQSGLSQTFLEAISS-----NW 439
Query: 459 ISVLHPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTK 518
IS L L +++ G AA YETYK C +G W+ L +S DK
Sbjct: 440 ISGL--LREMVSEG-LRAAGYETYKNACR--------------LGF-WEADLADSLDKAL 481
Query: 519 E---HESLRKVKAVNSDPS 534
E H S +A + PS
Sbjct: 482 EEPDHNSEADSEAKPTGPS 500
>gi|218201212|gb|EEC83639.1| hypothetical protein OsI_29373 [Oryza sativa Indica Group]
Length = 602
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 184/400 (46%), Gaps = 56/400 (14%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
+A FDFN CI++G+SYLSR QE A + + + ++++ + +I D
Sbjct: 129 MAHSGFDFNMCIYDGISYLSRAQESLARERIFIPH----------VRQLSSSPSTSIADS 178
Query: 64 LFAERMKDRLSEWLGGLLR--NRDEGSEVQPSFNDSKQQ-FETIFFKMRPAISLNGFTSH 120
+F R+K R+ W G + +GS V N +Q + + RP+ S++ +
Sbjct: 179 VFLTRIKSRIEHWRKGYTKPCKTADGSLV----NTLRQLVLGSESYGSRPSFSIDVCSDR 234
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q+ L+ DL L V + ++ V +++ S DK +L+ ++K K++ E +
Sbjct: 235 QVQLVLEAANHISDDLVPLVVPDKAGTARAVRVIFTSSPEDKNLLLMDIK---KMEDEHN 291
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+K GFR VIDLLSS +K I+ +N D I+SKF PLP EF+ S+ F ++I
Sbjct: 292 LKFR-GFREVIDLLSSSQKPIISYNFLNDFTMIHSKFVAPLPPNLHEFMCSLRMVFSNVI 350
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
D M + L KA ++ Q AL ++L Q V ++VE I
Sbjct: 351 DI-----------SHMWREIGPLRKAKNI---QGAL----SYLQRQYFVPMDVE---IPQ 389
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT 359
+ N+ V ++G + +FA+ + L I Q+ + H + E+ +LY S T
Sbjct: 390 QDGNNSVT-KSGENVLRITKLFAKLSNLLKISPNGQTHPGDKCHT--VEEYSYILYPSCT 446
Query: 360 NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGF 399
E SE S+ N + + +V +WGF
Sbjct: 447 AEE----------SEDDKSSNESNTTRSVRTDNVVFLWGF 476
>gi|118487753|gb|ABK95700.1| unknown [Populus trichocarpa]
Length = 454
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 123/482 (25%), Positives = 211/482 (43%), Gaps = 69/482 (14%)
Query: 19 VSYLSREQEDKA-LKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWL 77
+SYLSREQE A ++ N +S T ++ D +F ER+K + W
Sbjct: 8 ISYLSREQESTAKIQMGNPILAKNVTES---------TSTLSVADSVFVERIKSHIKNWK 58
Query: 78 GGL--LRNRDEGSEVQPSFNDS--KQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHF 133
R EG+++Q + S K + RP ++++ + Q L+ ++++
Sbjct: 59 KACKETSTRKEGNQIQDALVRSLRKLVLGNEEYDSRPCMNIDVCSERQAQLVVEMLQEFA 118
Query: 134 KDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVK-DEQKIDAEMSIKASIGFRHVID 191
D+ L + + Q V +V S+ DK +L +++ DEQ++ ++ GFR VID
Sbjct: 119 DDVVPLIIPAKGGAMQAVRVVLTSSKEDKDLLQGKLQNDEQELKKKVR-----GFREVID 173
Query: 192 LLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSIL 251
L+S+ +K +V H D+ I+SKF PLP T +EF+ S+ FP +ID L+ S L
Sbjct: 174 LISASQKPVVSHGSLNDLTVIHSKFIAPLPPTVDEFMCSLRLAFPLVIDVNHLMKEISAL 233
Query: 252 QQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAG 311
++ TS+ A S L + P + +E+ + N H G
Sbjct: 234 RK-----VTSIPVAISQL----------KNRFFTP-IDMEIPCQAME----NEDTIH--G 271
Query: 312 YDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT------NGEIIN 365
+ +FA+ CS L ID S E + L + N+ T +GEI
Sbjct: 272 QNVVKICELFARLCSILKIDPAAVKSDEEKGAS-ALEAYANIFSPFCTASEEPIDGEI-- 328
Query: 366 LSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV-ISV 424
+ +NK N+ + E +V +WGF + A ++ + + + S V
Sbjct: 329 ---------KIWTNKWTNNTRTVSCEDLVFLWGFGDRVTAGVLKSLLQESHEAFSKEFDV 379
Query: 425 YHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYETYKE 484
VD + V F + + FL+ ++++ +D + PL +++ G AA YETY
Sbjct: 380 RLVDNSCAIVIFWQHGLTETFLN---TMNKCSD---MRGPLREMVSEGLR-AAGYETYNR 432
Query: 485 IC 486
C
Sbjct: 433 AC 434
>gi|148236825|ref|NP_001081143.1| poly(A)-specific ribonuclease PARN [Xenopus laevis]
gi|46329632|gb|AAH68919.1| Parn-A protein [Xenopus laevis]
Length = 631
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 116/450 (25%), Positives = 184/450 (40%), Gaps = 80/450 (17%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHS-----LKEIRDT 55
+DFLA FDFN G+ YL++E+E + + YED S + +
Sbjct: 113 IDFLANQGFDFNKVFRNGIPYLNQEEE----RVLRDQYEDRRSQSNGASTMSYISPNSSK 168
Query: 56 HLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 115
+IPD + D++ E + L+N + V+P
Sbjct: 169 TPVSIPDE--QKGFIDKVVERVEDFLKNEQKSMNVEPC---------------------- 204
Query: 116 GFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKM-LMKEVKDEQK 173
T +Q LI Q + K+ + + V E VI ++ E K+M K+ K+ ++
Sbjct: 205 --TGYQRKLIYQTLNWKYPRGIHVETVESEKKERYIVISKVDEEERKRMEQQKQAKEREE 262
Query: 174 IDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNK 233
+D ++GF +I +SS KL+VGHN LD+ H +FF LP EF N
Sbjct: 263 LDD------AVGFSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNC 316
Query: 234 YFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE 293
FP ++DTK++ ++N F + +L L P +V+
Sbjct: 317 VFPRVLDTKLMASTN----------------PFKEIIYNTSLAELEKRLKEAPFKPPKVD 360
Query: 294 -VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVN 352
+ +S N S HEAGYDA++TG F ++LG F ++ +R N
Sbjct: 361 SAEGFQSYNTASEQPHEAGYDAYITGLCFISMANYLG-SFLSPPKDYVSCRSKIVRPFFN 419
Query: 353 LLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECI 412
L+L I+++ N L KR N V+ FP K D+ +
Sbjct: 420 KLFLM----RIMDIPYLNLEGPDLQP-KRDN----------VLHVTFPKEWKTSDLYQLF 464
Query: 413 SKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
S +G I V +D+T+ FV S+ E V
Sbjct: 465 S-AFG---NIQVSWIDDTSAFVSLSQPEQV 490
>gi|326501938|dbj|BAK06461.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 595
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 123/488 (25%), Positives = 214/488 (43%), Gaps = 66/488 (13%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
+A+ FDFN CI++G+SYLSR QE A + + + L++ + ++ D
Sbjct: 122 MARDGFDFNMCIYDGISYLSRVQESLARQKTFTPH----------LQQPSPSASTSVADS 171
Query: 64 LFAERMKDRLSEWLGGLLR--NRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQ 121
+F R+K R+ W G +GS V + K + + RP++++ + Q
Sbjct: 172 VFTNRIKSRIQNWRKGCAEPSKTADGSLVS---SLRKLIMGSESYGSRPSMTILVCSDRQ 228
Query: 122 LLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+ L+ V+ DL L V + + V +++ S DK +L+ +++ K++ E S
Sbjct: 229 VQLVLETVKGTSDDLVTLVVPDKAGVPRAVRVIFTSSAEDKNLLLMDIR---KLEDEQSS 285
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
K GFR VIDL+SS +K I+ +NC D+ I+++F PLP EF+ S F ++D
Sbjct: 286 KFR-GFREVIDLVSSSEKPIISYNCLNDLTMIHAQFIAPLPPNLHEFMCSSRLVFSSVVD 344
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
L S L+ KA ++ Q AL ++L Q V +E+E I
Sbjct: 345 IGHLWREISPLR-----------KAKNI---QAAL----SYLQRQHFVPMEIE---IPLQ 383
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
+ GV ++G + +FA+ L I K QS S H + +H N+L S
Sbjct: 384 DGTRGVT-KSGENVLRITKLFAKLSKLLKITPKCQSQSGEQHHT--VEDHRNILCPSCMV 440
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
E S+ + + + +V +WGF A D+R +++++ S
Sbjct: 441 EE----------SDGVDCTNEPGTTRTVSTQSVVFLWGF-RETSAEDLRSRLTRLHHVFS 489
Query: 421 V-ISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASY 479
+ +D+T + F ++ S+ L IS+ P AA +
Sbjct: 490 KDFDLRLLDKTCSALIFRSSDTASELL----------GDISLESPSLNNFFSEGLKAAGF 539
Query: 480 ETYKEICS 487
+ Y++ CS
Sbjct: 540 DVYRKACS 547
>gi|60390587|sp|Q90ZA1.1|PARN_XENLA RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Deadenylating nuclease; AltName: Full=Deadenylation
nuclease; AltName: Full=Polyadenylate-specific
ribonuclease; AltName: Full=parn-A
gi|14495249|gb|AAK64218.1|AF309688_1 poly(A)-specific ribonuclease [Xenopus laevis]
Length = 631
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 116/450 (25%), Positives = 184/450 (40%), Gaps = 80/450 (17%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHS-----LKEIRDT 55
+DFLA FDFN G+ YL++E+E + + YED S + +
Sbjct: 113 IDFLANQGFDFNKVFRNGIPYLNQEEE----RVLRDQYEDRRSQSNGASTMSYISPNSSK 168
Query: 56 HLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 115
+IPD + D++ E + L+N + V+P
Sbjct: 169 TPVSIPDE--QKGFIDKVVERVEDFLKNEQKSMNVEPC---------------------- 204
Query: 116 GFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKM-LMKEVKDEQK 173
T +Q LI Q + K+ + + V E VI ++ E K+M K+ K+ ++
Sbjct: 205 --TGYQRKLIYQTLNWKYPRGIHVETVESEKKERYIVISKVDEEERKRMEQQKQAKEREE 262
Query: 174 IDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNK 233
+D ++GF +I +SS KL+VGHN LD+ H +FF LP EF N
Sbjct: 263 LDD------AVGFSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNC 316
Query: 234 YFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE 293
FP ++DTK++ ++N F + +L L P +V+
Sbjct: 317 VFPRVLDTKLMASTN----------------PFKEIIYNTSLAELEKRLKEAPFKPPKVD 360
Query: 294 -VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVN 352
+ +S N S HEAGYDA++TG F ++LG F ++ +R N
Sbjct: 361 SAEGFQSYNTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKDYVSCRSKIVRPFFN 419
Query: 353 LLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECI 412
L+L I+++ N L KR N V+ FP K D+ +
Sbjct: 420 KLFLM----RIMDIPYLNLEGPDLQP-KRDN----------VLHVTFPKEWKTSDLYQLF 464
Query: 413 SKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
S +G I V +D+T+ FV S+ E V
Sbjct: 465 S-AFG---NIQVSWIDDTSAFVSLSQPEQV 490
>gi|261335987|emb|CBH09267.1| putative poly(A)-specific ribonuclease (parn) [Heliconius
melpomene]
Length = 624
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 187/455 (41%), Gaps = 98/455 (21%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN I EG+SY++ E ++S
Sbjct: 107 LDFLASQGFDFNKLIKEGISYMT-----------------EPIES--------------- 134
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
R+++ L+E +L ++D V P +++KQQ E I K+R + N
Sbjct: 135 -------RLRENLTERQSRILNDKD--PIVIP--DENKQQIEDICEKVRTFLDENKTDEM 183
Query: 121 QLLLIQLVVRK--------HFKDLAYLRVSG-ENSCSQNVIVYIESESDKKMLMKEVKDE 171
++ +R+ FKD A++ EN + I+S SD K KD+
Sbjct: 184 EIERCNAFIRRLLFQELGSRFKDEAFVETKVLENKSRVLKVTRIKSASDSKS-----KDD 238
Query: 172 QK-IDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISS 230
QK + ++GF V ++S +KL+VGHN LD+ H S FF PLP F
Sbjct: 239 QKREKEWEEFEEAVGFSKVARMISQSEKLVVGHNMLLDVLHTLSHFFQPLPEDYASFKEF 298
Query: 231 VNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKV 290
+ FP ++DTK + +S+ + K +ST L L+ P
Sbjct: 299 AHCMFPRLLDTKYM---SSLPPFKDKVASTVLPHLIQT-------------LSEPPFTLP 342
Query: 291 EVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREH 350
E+ R + HEAGYDA++TG F +H+ + + + L+
Sbjct: 343 EIPALSSRGYTFAQDKHHEAGYDAYVTGLCFLAMHAHV-TRMRGEKCTRVTPDAAVLKPF 401
Query: 351 VNLLYLSWT---NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWD 407
+N LYL+ T + INL+ G S S ++H V FP K W
Sbjct: 402 INKLYLAKTAHQDSPYINLA-GTDPSPS------RDH---------VFHLTFP---KEWQ 442
Query: 408 IRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
R I++++ I+V ++ET V SR E+
Sbjct: 443 -RNDINQLFSAYGQITVNFLNETTALVALSRKELA 476
>gi|49115955|gb|AAH73682.1| Unknown (protein for IMAGE:5572400), partial [Xenopus laevis]
Length = 517
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 116/450 (25%), Positives = 183/450 (40%), Gaps = 80/450 (17%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS-----WHSLKEIRDT 55
+DFLA FDFN G+ YL++E+E + + YED S +
Sbjct: 113 IDFLANQGFDFNKVFRNGIPYLNQEEE----RVLRDQYEDRRSQSNGASTMSYISPNSSK 168
Query: 56 HLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 115
+IPD + D++ E + L+N + V+P
Sbjct: 169 TPVSIPDE--QKGFIDKVVERVEDFLKNEQKSMNVEPC---------------------- 204
Query: 116 GFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKM-LMKEVKDEQK 173
T +Q LI Q + K+ + + V E VI ++ E K+M K+ K+ ++
Sbjct: 205 --TGYQRKLIYQTLNWKYPRGIHVETVESEKKERYIVISKVDEEERKRMEQQKQAKEREE 262
Query: 174 IDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNK 233
+D ++GF +I +SS KL+VGHN LD+ H +FF LP EF N
Sbjct: 263 LDD------AVGFSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNC 316
Query: 234 YFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE 293
FP ++DTK++ ++N F + +L L P +V+
Sbjct: 317 VFPRVLDTKLMASTN----------------PFKEIIYNTSLAELEKRLKEAPFKPPKVD 360
Query: 294 -VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVN 352
+ +S N S HEAGYDA++TG F ++LG F ++ +R N
Sbjct: 361 SAEGFQSYNTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKDYVSCRSKIVRPFFN 419
Query: 353 LLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECI 412
L+L I+++ N L KR N V+ FP K D+ +
Sbjct: 420 KLFLM----RIMDIPYLNLEGPDLQP-KRDN----------VLHVTFPKEWKTSDLYQLF 464
Query: 413 SKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
S +G I V +D+T+ FV S+ E V
Sbjct: 465 S-AFG---NIQVSWIDDTSAFVSLSQPEQV 490
>gi|115530723|emb|CAL49352.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Xenopus
(Silurana) tropicalis]
Length = 519
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 117/452 (25%), Positives = 186/452 (41%), Gaps = 84/452 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDE-------SLDSWHSLKEIR 53
+DFLA FDFN G+ YL++E+E K + YE+ S S+ S +
Sbjct: 113 IDFLANQGFDFNKVFRNGIPYLNQEEE----KQLRDQYEERRSQSNGASAMSYVSPNASK 168
Query: 54 DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAIS 113
+IPD + D++ E + L+N + +V+P
Sbjct: 169 TP--VSIPDE--QKGFIDKVVERVEDFLKNEQKSMDVEPC-------------------- 204
Query: 114 LNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKM-LMKEVKDE 171
T +Q LI Q + K+ + + + E VI ++ E K+M K+ K+
Sbjct: 205 ----TGYQRKLIYQTLNWKYPRGIHVETLESEKKERYIVISKVDEEERKRMEQQKQAKER 260
Query: 172 QKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSV 231
+++D ++GF +I +SS KL+VGHN LDI H +FF LP EF
Sbjct: 261 EELDD------AVGFSRIIQAISSSGKLVVGHNMLLDIMHTIHQFFCQLPDELNEFKEVT 314
Query: 232 NKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVE 291
N FP ++DTK++ ++N F + +L L P +
Sbjct: 315 NCVFPRVLDTKLMASTN----------------PFKEIIYNTSLAELEKRLKEAPFKPPK 358
Query: 292 VE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREH 350
V+ + S N S HEAGYDA++TG F ++LG F + ++ +R
Sbjct: 359 VDSAEGFPSYNTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKGYVSSRSKIIRPF 417
Query: 351 VNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRE 410
N L+L I+++ N L KR N V+ FP K D+ +
Sbjct: 418 FNKLFLM----RIMDIPYLNLEGPDLQP-KRDN----------VLHVAFPKEWKTSDLYQ 462
Query: 411 CISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
S +G I V +D+T+ FV S + V
Sbjct: 463 LFS-AFG---NIQVSWIDDTSAFVSLSHPDQV 490
>gi|197246532|gb|AAI69159.1| Unknown (protein for IMAGE:8898488) [Xenopus (Silurana) tropicalis]
Length = 525
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 117/452 (25%), Positives = 186/452 (41%), Gaps = 84/452 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDE-------SLDSWHSLKEIR 53
+DFLA FDFN G+ YL++E+E K + YE+ S S+ S +
Sbjct: 113 IDFLANQGFDFNKVFRNGIPYLNQEEE----KQLRDQYEERRSQSNGASAMSYVSPNASK 168
Query: 54 DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAIS 113
+IPD + D++ E + L+N + +V+P
Sbjct: 169 TP--VSIPDE--QKGFIDKVVERVEDFLKNEQKSMDVEPC-------------------- 204
Query: 114 LNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKM-LMKEVKDE 171
T +Q LI Q + K+ + + + E VI ++ E K+M K+ K+
Sbjct: 205 ----TGYQRKLIYQTLNWKYPRGIHVETLESEKKERYIVISKVDEEERKRMEQQKQAKER 260
Query: 172 QKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSV 231
+++D ++GF +I +SS KL+VGHN LDI H +FF LP EF
Sbjct: 261 EELDD------AVGFSRIIQAISSSGKLVVGHNMLLDIMHTIHQFFCQLPDELNEFKEVT 314
Query: 232 NKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVE 291
N FP ++DTK++ ++N F + +L L P +
Sbjct: 315 NCVFPRVLDTKLMASTN----------------PFKEIIYNTSLAELEKRLKEAPFKPPK 358
Query: 292 VE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREH 350
V+ + S N S HEAGYDA++TG F ++LG F + ++ +R
Sbjct: 359 VDSAEGFPSYNTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKGYVSSRSKIIRPF 417
Query: 351 VNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRE 410
N L+L I+++ N L KR N V+ FP K D+ +
Sbjct: 418 FNKLFLM----RIMDIPYLNLEGPDLQP-KRDN----------VLHVAFPKEWKTSDLYQ 462
Query: 411 CISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
S +G I V +D+T+ FV S + V
Sbjct: 463 LFS-AFG---NIQVSWIDDTSAFVSLSHPDQV 490
>gi|440801121|gb|ELR22146.1| ribonuclease, putative [Acanthamoeba castellanii str. Neff]
Length = 546
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 143/322 (44%), Gaps = 54/322 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +++FDFN I+EGV YLSR E K V E + L S + + D N
Sbjct: 109 LQFLLEHKFDFNKFIYEGVGYLSRYVEGKMRPQVEE--EIQKLLDAASQEALPDIVPTNP 166
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D+ F +K + WL G +GSE P I+ N F
Sbjct: 167 RDVEFVAGIKASIDGWLQG------DGSE--PLL----------------LIAPNSFLRR 202
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
L+ VR ++ +L +V G N+ + SE +K E+ +++ + E
Sbjct: 203 ---LVYQEVRGNYPELNVEKVQG---TWDNMSISRMSEEEKARRRAELVQQKRDEFE--- 253
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
A+IGFR V + +S+ +K +VGHN LD+ + Y F LP + F ++NK FP I D
Sbjct: 254 -AAIGFRQVWEAMSASRKPVVGHNLLLDLLYSYFHFEDRLPSSFRNFKVAINKVFPTIFD 312
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TK + ++ + R+ ++ G + A++ V V V +
Sbjct: 313 TKHIAATDPAYKDRL-----------------LSTGLGDVYAAVKGGVNV-VHAEGFDRY 354
Query: 301 NWNSGVKHEAGYDAFMTGCVFA 322
N HEAG+DA+MTG +FA
Sbjct: 355 RENEEYAHEAGFDAYMTGAIFA 376
>gi|308235956|ref|NP_001184102.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Xenopus
(Silurana) tropicalis]
Length = 632
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 114/448 (25%), Positives = 184/448 (41%), Gaps = 76/448 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYED-ESLDSWHSLKEIRDTHLFN 59
+DFLA FDFN G+ YL++E+E K + YE+ S + S +
Sbjct: 113 IDFLANQGFDFNKVFRNGIPYLNQEEE----KQLRDQYEERRSQSNGASAMSYVSPNASK 168
Query: 60 IPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGF 117
P + E+ D++ E + L+N + +++P
Sbjct: 169 TPVSIPDEQKGFIDKVVERVEDFLKNEQKSMDLEPC------------------------ 204
Query: 118 TSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKM-LMKEVKDEQKID 175
T +Q LI Q + K+ + + + E VI ++ E K+M K+ K+ +++D
Sbjct: 205 TGYQRKLIYQTLNWKYPRGIHVETLESEKKERYIVISKVDEEERKRMEQQKQAKEREELD 264
Query: 176 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
++GF +I +SS KL+VGHN LDI H +FF LP EF N F
Sbjct: 265 ------DAVGFSRIIQAISSSGKLVVGHNMLLDIMHTIHQFFCQLPDELNEFKEVTNCVF 318
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-V 294
P ++DTK++ ++N F + +L L P +V+
Sbjct: 319 PRVLDTKLMASTN----------------PFKEIIYNTSLAELEKRLKEAPFKPPKVDSA 362
Query: 295 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLL 354
+ S N S HEAGYDA++TG F ++LG F + ++ +R N L
Sbjct: 363 EGFPSYNTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKGYVSSRSKIIRPFFNKL 421
Query: 355 YLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISK 414
+L I+++ N L KR N V+ FP K D+ + S
Sbjct: 422 FLM----RIMDIPYLNLEGPDLQP-KRDN----------VLHVAFPKEWKTSDLYQLFS- 465
Query: 415 VYGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I V +D+T+ FV S + V
Sbjct: 466 AFG---NIQVSWIDDTSAFVSLSHPDQV 490
>gi|403222320|dbj|BAM40452.1| uncharacterized protein TOT_020000708 [Theileria orientalis strain
Shintoku]
Length = 625
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 152/364 (41%), Gaps = 107/364 (29%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDK-------ALKHVNS-----TYEDESLDSWHS 48
++FL FDFN+ I G+ +L ++E++ L H++ EDE
Sbjct: 178 LNFLKDNNFDFNSWIRHGICHLKPKEEEERKSLILSKLAHIDELTRGINKEDEEF----K 233
Query: 49 LKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKM 108
+ E T++ ++ D E + R+ WL F+ K+ E F++
Sbjct: 234 VNEYDLTNIQDLEDRKTVEEVVKRVEGWL----------------FSQDKKPLE---FEV 274
Query: 109 RPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQN----VIVYIES----ESD 160
A LLI V+ F ++ NSC ++ V VY ESD
Sbjct: 275 ESAF--------LRLLIHSVISIKFPNIY------SNSCKKDDRKLVRVYKSQRELLESD 320
Query: 161 KKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPL 220
+ L+ E+ + I+ +G R + D +SS KK++VGHNCF DI H+Y F+G L
Sbjct: 321 RATLLSELSE---------IEREVGLRTLFDTISSHKKILVGHNCFYDILHVYQTFYGDL 371
Query: 221 PLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKST 280
P T E F + K FP + DTK +S+ F +L PQ +L
Sbjct: 372 PDTVESFKAEWLKVFPKVFDTKY------------------ISEFFHILNPQSSLKMLYE 413
Query: 281 HLALQPSVKVEVE------------------VDDIRSSNWNSGV-----KHEAGYDAFMT 317
+ + +VEVE +DDI GV +H+AGYD+FMT
Sbjct: 414 SVLSSSTSRVEVEALPGTKWDITLPGSRRGVIDDIGDRGATEGVVKKFDEHDAGYDSFMT 473
Query: 318 GCVF 321
G VF
Sbjct: 474 GLVF 477
>gi|321455833|gb|EFX66955.1| hypothetical protein DAPPUDRAFT_203845 [Daphnia pulex]
Length = 582
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 147/342 (42%), Gaps = 65/342 (19%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FLA FDFN I EG+ YL+ +E+K + + ++DS +
Sbjct: 111 LSFLATQGFDFNKLIKEGIPYLNLLEEEKVKLKLEKRNKFSNVDS-------------KV 157
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQP---SFNDSKQQFETIFFKMR-------P 110
P + +E SE+ P + D T FF+ P
Sbjct: 158 P--------------------CHNNEISEIPPDQKGYVDHIVSKVTTFFESNGNDEEKSP 197
Query: 111 AISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 170
AI +S Q LI VR + +L + VS + +C V ++ + L KE D
Sbjct: 198 AILEFQCSSLQSELIFSHVRTRYPNLLF--VSAKKTCG-GCTVTVKKAASSCNLEKESVD 254
Query: 171 EQKIDA--EMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFI 228
++ + A + I+ +GF V+ +++ KL+VGHN LD+ HI +F PLP EEF
Sbjct: 255 KKSLPAAEKPRIEDYMGFSEVVRKITNSGKLVVGHNMLLDLCHILGQFCEPLPEDYEEFK 314
Query: 229 SSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSV 288
+ N +FP +IDTK++ + +K F L P ALG L P
Sbjct: 315 AMTNTFFPRVIDTKVM----------------ATTKPFRDLLPNSALGPLLKALLKAPFR 358
Query: 289 KVE-VEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 329
E V D S +S +HEAGYDAF+TG ++LG
Sbjct: 359 NTEIVTAKDFPSYKDDSLKEHEAGYDAFVTGRCLIALTNYLG 400
>gi|427786977|gb|JAA58940.1| Putative polya-specific ribonuclease parn [Rhipicephalus
pulchellus]
Length = 637
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 123/466 (26%), Positives = 207/466 (44%), Gaps = 60/466 (12%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSRE---QEDKAL--KHVNSTYEDESLDSWHS----LKE 51
+ FL+++ FDFN GVSYL E Q +AL +H E S ++ S ++
Sbjct: 109 LQFLSQHGFDFNKLFSHGVSYLRAEEATQLSQALSERHAQQLKEVGSPNNGPSKISKVEV 168
Query: 52 IRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDE-GSEVQPSFNDSKQQF---ETIFFK 107
+DT F I D+L ++++ L G + DE G S DS + E K
Sbjct: 169 PKDTQQF-IDDVL--DKVQQFLDSASGTEVDMEDEDGVGSAASKQDSPEDLCMREASPKK 225
Query: 108 MRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKE 167
+ L+ + LI V F D L ++ ++ V I +++ E
Sbjct: 226 DGSTLHLSECNGFKRKLIYQEVNARFGDKVQLNTESDSDGMLHIAVRITGTPEEQRARLE 285
Query: 168 VKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEF 227
++ QK + E ++ + GF V++LL+S KLIVGHN LDI H+ S+F LP EF
Sbjct: 286 LR--QKKERE-DLELAHGFGRVLELLASSGKLIVGHNMLLDIMHLLSQFVDDLPKDYNEF 342
Query: 228 ISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPS 287
S V FP ++DTK+L + ++I + ++ A +L Q L +PS
Sbjct: 343 KSMVRAAFPCLVDTKVLASDDAI-------KDSFVTTALELLLKQ---------LRNRPS 386
Query: 288 VKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEK- 346
VE ++ + N HEAGYDA++TG C LG K + S L
Sbjct: 387 CVPPVESENGYGYSLNQTKYHEAGYDAYVTGMCLLGLCQQLG---KYKDHSVELKETSPV 443
Query: 347 LREHVNLLYLSWTNGEIINLS-TGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKA 405
L+ ++N +++ + +I L+ GN S ++H ++ FP +A
Sbjct: 444 LKPYLNRVHM-MQSPDIPTLNMAGNEVIPS------RSH---------ILHATFPMEWRA 487
Query: 406 WDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 451
D+ + ++ I+++ ++ T FV + + + ++ L GS
Sbjct: 488 NDLYQ----LFNSFGQITIHWINSTQAFVAMASSPLATQALKKLGS 529
>gi|443696772|gb|ELT97394.1| hypothetical protein CAPTEDRAFT_177560 [Capitella teleta]
Length = 612
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 119/460 (25%), Positives = 186/460 (40%), Gaps = 95/460 (20%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFL + FDFN C EG+SY++ ++E HV + L+ H+ RD
Sbjct: 124 IDFLINHNFDFNKCFKEGISYMNCDEE----LHVT-----KKLEQRHAEAAARDAQRLLS 174
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
P +K +++ L R + + S N+S + PA N F
Sbjct: 175 PSRSLHNDLKPGQKQYMQDL---RIKITNFVKSSNES--------LSLDPA---NAFL-- 218
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+ L L+ K+ + + E ++ I S++D + + K ++ Q + +
Sbjct: 219 RKLTYNLLHGKYPNQIHVQTKTNEKHQQYLLLQKISSKTDVENIEKMRRNSQLGE----V 274
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+ ++GF VI LL +KLI+GHN LD+ H+ KF LP + EEF + FP IID
Sbjct: 275 QDAVGFAKVIQLLRESEKLIIGHNMLLDLLHMVDKFCAVLPQSYEEFKLLASSVFPQIID 334
Query: 241 TKILLN---SNSILQQRMKKSSTSLSKAFSVLCPQI-------ALGSKSTHLALQPSVKV 290
TK++ N I+ S K P+I A GS S+H
Sbjct: 335 TKVMATLPPLNDIISSSNLSDLLSTVKESPFSSPEIEWADNMDAYGSASSH--------- 385
Query: 291 EVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSEN----LAHNEK 346
+HEA YDAF TG F +L S+EN LAH +
Sbjct: 386 ----------------EHEAAYDAFSTGVCFISMAQYLA-----SKSAENTDDILAHLKP 424
Query: 347 LREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAW 406
VN++ + + INL + T KNH V FPS K+
Sbjct: 425 FLNKVNVMRMQ--DIPFINLDAPDLTP-------CKNH---------VFHVTFPSEWKSN 466
Query: 407 DIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFL 446
D+ + ++ P + + VD T+ FV + + S+ L
Sbjct: 467 DLYQ----LFFPYGGVQISWVDGTSAFVSLVKKDQASEVL 502
>gi|156351496|ref|XP_001622538.1| hypothetical protein NEMVEDRAFT_v1g1365 [Nematostella vectensis]
gi|156209100|gb|EDO30438.1| predicted protein [Nematostella vectensis]
Length = 459
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 148/336 (44%), Gaps = 49/336 (14%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSW-----HSLKEIRDT 55
+DFL+ + FDF I +G+SYL E K + + S + HS
Sbjct: 110 LDFLSGHNFDFQKWITQGISYLRPYDEQKLRDNFQERQAEHSFGPFTSPPVHSPTGSSTK 169
Query: 56 HLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 115
+++ P I+ E E++ G S+++ D + ++ N
Sbjct: 170 NVYKTPVIVPPEH-----QEFVSGAC------SKIEEMVKDPDGKRTSL-------PPCN 211
Query: 116 GFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 175
G+ LI V+ F+ +L N + IV + + ++K K ++E+
Sbjct: 212 GYLRK---LIYQTVKHRFRSGIHLE-KNMNEKKECFIVATKVDDNEK---KTFEEEKMAK 264
Query: 176 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
+ I++++GF V+ ++S KL+VGHN LD+ HI +FF PLP ++F ++V
Sbjct: 265 EDELIESAVGFSAVMKMISDSGKLVVGHNMLLDLLHIVDQFFCPLPADLDDFKATVQSLL 324
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVD 295
P ++DTK++ + ++ F P LG HL + P + EV D
Sbjct: 325 PRVLDTKVM----------------ATTQPFKNHLPSTVLGDLVKHLTVSPFRRPEVFTD 368
Query: 296 DIRSSNWNSGVK--HEAGYDAFMTGCVFAQACSHLG 329
+ S + G + HEA YDA++TG F ++LG
Sbjct: 369 Q-QFSLYEEGSENLHEAAYDAYITGLSFVSMANYLG 403
>gi|224132034|ref|XP_002321239.1| predicted protein [Populus trichocarpa]
gi|222862012|gb|EEE99554.1| predicted protein [Populus trichocarpa]
Length = 628
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 120/496 (24%), Positives = 210/496 (42%), Gaps = 69/496 (13%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
+A+ FDFN+CI++G+SYLSREQE A + + +++ T ++ D
Sbjct: 143 MARQGFDFNSCINDGISYLSREQESAAKIQMGNPILAKNV--------TESTSTLSVADS 194
Query: 64 LFAERMKDRLSEWLGGL--LRNRDEGSEVQPSFNDS--KQQFETIFFKMRPAISLNGFTS 119
+F ER+K + W R EG+++Q + S K + RP ++++ +
Sbjct: 195 VFVERIKSHIKNWKKACKETSTRKEGNQIQDALVRSLRKLVLGNEEYDSRPCMNIDVCSE 254
Query: 120 HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVKDEQKIDAEM 178
Q L+ ++++ D+ L + + Q V +V S+ DK +L + +
Sbjct: 255 RQAQLVVEMLQEFADDVVPLIIPAKGGAMQAVRVVLTSSKEDKDLLQENTVISFTREGSP 314
Query: 179 SIKASIGFRHVIDLLSSEK-KLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 237
K G +++L++ K +V H D+ I+SKF PLP T +EF+ S+ FP
Sbjct: 315 GTK---GKSLIVNLVAEYNLKPVVSHGSLNDLTVIHSKFIAPLPPTVDEFMCSLRLAFPL 371
Query: 238 IIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDI 297
+ID L+ S L++ TS+ A S L + P + +E+ +
Sbjct: 372 VIDVNHLMKEISPLRK-----VTSIPVAISQL----------KNRFFTP-IDMEIPCQAM 415
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
N H G + +FA+ CS L ID S E + L + N+
Sbjct: 416 E----NEDTIH--GQNVVKICELFARLCSILKIDPAAVKSDEEKGAS-ALEAYANIFSPF 468
Query: 358 WT------NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIREC 411
T +GEI + RT + E +V +WGF + A ++
Sbjct: 469 CTASEEPIDGEIKIWTNNTRT---------------VSCEDMVFLWGFGDRVTAGILKSL 513
Query: 412 ISKVYGPTSV-ISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLE 470
+ + + S V VD + V F + + FL+ ++++ +D + PL +++
Sbjct: 514 LQESHEAFSKEFDVRLVDNSCAIVIFWQHGLTETFLN---TMNKCSD---MRGPLREMVS 567
Query: 471 GGNTCAASYETYKEIC 486
G AA YETY C
Sbjct: 568 EGLR-AAGYETYNRAC 582
>gi|297831446|ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 120/508 (23%), Positives = 212/508 (41%), Gaps = 109/508 (21%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLF----- 58
+A+ FDFN CI+EG+SYLSR QE S + S I H+
Sbjct: 139 MAREGFDFNTCIYEGISYLSRAQE--------------SASKFLSGNPILADHITVSSSP 184
Query: 59 -NIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIF-----FKMRPAI 112
+ D +F R++ R+ W + D GS+ +D + + R +
Sbjct: 185 ATVADTVFVGRIRSRVKNWRQSCI---DSGSKT--GDDDLVSSLRRLVLGSEQYGSRLCL 239
Query: 113 SLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVKDE 171
+++ + Q+ LI ++ + D+ L V+ ++ +Q V V++ S+ DK + +E++D
Sbjct: 240 TIDVCSERQVQLILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELQDL 299
Query: 172 QKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSV 231
+K + + GFR V+DL+SS +K +V N D I++KF GPLP ++F SS+
Sbjct: 300 EKEEN----RRVRGFREVVDLISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNLDDFSSSL 355
Query: 232 NKYFPHIIDTKILLNSNSILQQ--RMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVK 289
+ FP+++D + S L + + +SL++ F V
Sbjct: 356 SSAFPNVVDLSQFMKEISPLSNISNLPAAMSSLNRFF---------------------VP 394
Query: 290 VEVEVDDIRSSNWNSGVK----HEA-GYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHN 344
V+VEV +N VK H++ G +A M +FA+ C+ Q+S + N
Sbjct: 395 VDVEV-----ANQGCPVKLNEGHQSHGQNAVMISQLFAKLCTI------QKSDQSTVQSN 443
Query: 345 EKLR-----EHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGF 399
E + EH N + N G+ S+ + ++WG
Sbjct: 444 EDFQALASDEHANSVTSCSKNA-------GDENSK---------------LRELGVIWGL 481
Query: 400 PSHLKAWDIRECISKVYGP-TSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDP 458
+ A ++ + K + V ++D + V F + FL + N+
Sbjct: 482 AKKMTAAKLKNVLQKSHPVFAQEFDVKYLDRSCAIVVFWESGPSETFLSVV------NNE 535
Query: 459 ISVLHPLAKLLEGGNTCAASYETYKEIC 486
+ L +++ G A+ YETYK C
Sbjct: 536 EQLDGSLREMVAQG-LRASGYETYKRAC 562
>gi|384488069|gb|EIE80249.1| hypothetical protein RO3G_04954 [Rhizopus delemar RA 99-880]
Length = 747
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 147/332 (44%), Gaps = 70/332 (21%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
DFL K FDFN +++G+ YL++ QE+K + K + D + NI
Sbjct: 308 FDFLVKQSFDFNKWVYQGIPYLTK-QEEKVYRE-------------QGEKRMAD-DMPNI 352
Query: 61 P----DILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 116
P + F + K ++ +WL +D+G +++
Sbjct: 353 PVDEKEFEFMKAAKQKIEQWLKD--NKKDDG------------------------VNIVA 386
Query: 117 FTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDA 176
++Q LI VR ++ +L + + G +I + KE K E+
Sbjct: 387 KNAYQRRLIYQEVRNNYSELTAIGMQG----------FIRITKLTEKQQKERKKEKLEKF 436
Query: 177 EMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP 236
E + ++GFR VID++S KK++VGHN LDI H+ +F PLP T EF +K FP
Sbjct: 437 ENDCRQAVGFRKVIDMISESKKMVVGHNMLLDICHVIGQFVQPLPDTLAEFKVLTHKLFP 496
Query: 237 HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDD 296
++IDTK + + L ++ ++T+L Q+ + A P + + +
Sbjct: 497 NLIDTKYMCAAEPEL-FKIFGTATALE--------QLRFETSKEAFA-NPRIDMHPQF-- 544
Query: 297 IRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ + HEAGYDAFMTG F + S+L
Sbjct: 545 ---PRYLTEKAHEAGYDAFMTGAAFLRLTSYL 573
>gi|158285726|ref|XP_308433.4| AGAP007399-PA [Anopheles gambiae str. PEST]
gi|157020132|gb|EAA04629.5| AGAP007399-PA [Anopheles gambiae str. PEST]
Length = 631
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 108/464 (23%), Positives = 189/464 (40%), Gaps = 86/464 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDK---------ALKHVN--STYEDESLDSWHSL 49
M FLA FDFN EG+SY + +E + A + N + E + + +
Sbjct: 114 MRFLADNGFDFNRLFREGLSYANETEEQRYRADLKDRQATRAANILAAAESDLTEEEPKV 173
Query: 50 KEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMR 109
E+ D ++ +P E Q +D+ E R
Sbjct: 174 GEVNDVNMIPVP--------------------------PEHQQQVDDTAASIEEFLQSDR 207
Query: 110 PAISLNGFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEV 168
+ + + Q LI Q++ +++ + ++ VS EN+ I+ E + ++
Sbjct: 208 QELIVGSCNAFQRKLIYQMIEQRYQRKVSTSTVSLENNQKA-----IKVERKRSTEEEQA 262
Query: 169 KDEQKIDAEMS-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEF 227
DEQ+ E ++ ++G V+ L+ +KLI+GHN LD+ ++ +FF PLP +EF
Sbjct: 263 LDEQRRTRENDDLETNVGLSLVLQELAKARKLIIGHNMLLDLFYVLRQFFKPLPADYQEF 322
Query: 228 ISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPS 287
+YFP ++DTK L + I ++ +S+ L+ + + + + H L
Sbjct: 323 KKLTKEYFPLLLDTKYLCTNAEI---KVNVNSSVLAHVYDAVS-KAPFSIPTVHPELP-- 376
Query: 288 VKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKL 347
+ VDD + KHEAGYDA++TG F S + Q NL H
Sbjct: 377 -DYQYSVDDEK--------KHEAGYDAYLTGLCFLGLVSKFKANLLQLPKDPNLKH---- 423
Query: 348 REHVNLLYLS-WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAW 406
++N ++++ T+ I L+ T + + H + FP +
Sbjct: 424 --YLNRIFITRLTDVNYIYLNGKEPT-------QTREH---------IFYATFPETWRTG 465
Query: 407 DIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKG 450
DI+ K +GP + V +D T+ FV S L + G
Sbjct: 466 DIQNKF-KPFGP---VHVSWLDNTSAFVALHNRSAASSVLKMIG 505
>gi|84994634|ref|XP_952039.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65302200|emb|CAI74307.1| hypothetical protein, conserved [Theileria annulata]
Length = 623
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 115/485 (23%), Positives = 195/485 (40%), Gaps = 121/485 (24%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLS--REQEDKAL-----------------KHVNSTYEDE 41
++FL FDFN+ I +G+++L+ E+E K+L +V ST
Sbjct: 185 LNFLKDNNFDFNSWIRDGITHLTPKEEEERKSLIVSKLHQIQLNLKNLSDSNVESTRNTS 244
Query: 42 SLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQF 101
++++ + + I+D + D E+M +R++EW +L DEG
Sbjct: 245 NVNTEYDVSSIKD-----LEDRRVVEQMIERINEW---ILVEGDEG-------------- 282
Query: 102 ETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDK 161
R + ++ LL+ V+ + +L NS +N + Y+
Sbjct: 283 -------RAPLEFEVESAFLRLLMHSVISIKYPNLY------SNSSQRNGVRYVMVYK-T 328
Query: 162 KMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLP 221
+M + E + + + +I +G R + D +S K++VGHNCF DI HIY F+G LP
Sbjct: 329 QMELLEEERKLLEEELEAINKQVGLRTLFDKISKNNKILVGHNCFYDILHIYQTFYGDLP 388
Query: 222 LTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTH 281
E+F + FP I DTK +S+ + P L S
Sbjct: 389 ENVEDFKKKWVQVFPTIFDTKY------------------ISEYYQQFTPHTTLKSLYNS 430
Query: 282 LALQPSVKVEVEVDDIRSSNWNSGV---------KHEAGYDAFMTGCVFAQACSHLGIDF 332
+V E+ + + G +HEAGYD+ MT VF L
Sbjct: 431 FLPNQNVLNRFEISSLGTRGIVCGYGNVLNEAEKEHEAGYDSLMTAIVFIH---QLETVI 487
Query: 333 KQQSSSENLAHNEKLREHVNLL--YLSWTN-------------GEIINLSTGNRTSESLA 377
K ++SS N NL+ YL +N GE++N + S+
Sbjct: 488 KNKNSSLN-----------NLIKAYLDTSNTANSMGKVIMNIFGEVVNSVRLVKCQPSVI 536
Query: 378 SNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFS 437
+ + K + ++GFP+ K W+I K++ P V S+ +DET+ ++
Sbjct: 537 NMNNEEDMSKHFY-----MFGFPNVWKKWEIM----KIWSPLWV-SISWIDETSCWIIAK 586
Query: 438 RAEMV 442
+E V
Sbjct: 587 NSEDV 591
>gi|296417778|ref|XP_002838529.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634469|emb|CAZ82720.1| unnamed protein product [Tuber melanosporum]
Length = 455
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 149/344 (43%), Gaps = 69/344 (20%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL + F+FN+ G+ YLSR +E ++ N ++ KE D H+
Sbjct: 114 IGFLLESGFNFNSTYTSGIRYLSRREERYVIERENRLAQE--------FKE--DIHI--- 160
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D S+ +D +E+Q +D F+ + + G S+
Sbjct: 161 ----------DEASQQF-----VKDFIAEIQEWVDDPNPTFDFV----NISTVGQGVNSY 201
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
Q LI VVRK F L L G + Q ++ + ++K MK +DE++ E +
Sbjct: 202 QKRLIHQVVRKTFPHLQTL---GRPTFVQ--VIRTDPAAEK---MK--RDERRARFETDV 251
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+ IG RHVID L S +K ++GHN F D+ ++Y F GPLP T++EF ++++ FP +ID
Sbjct: 252 ERGIGLRHVIDALFSSQKPLIGHNLFTDLINLYECFIGPLPDTSKEFAHAIHESFPIVID 311
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLC----PQIALGSKSTHLALQPSVKVEVEVDD 296
TK + ++ ++L + +L P I L T A
Sbjct: 312 TKFIATCDT----ETATYGSNLQGIWDLLSTQDFPAIGLDLGYTRYA------------- 354
Query: 297 IRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSEN 340
S + HEAGYD++ T + + + +SEN
Sbjct: 355 ------TSRLAHEAGYDSYNTAQILIRLIGRYQAYLSRHLASEN 392
>gi|429327871|gb|AFZ79631.1| hypothetical protein BEWA_024800 [Babesia equi]
Length = 582
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 136/306 (44%), Gaps = 62/306 (20%)
Query: 167 EVKDEQ--KIDAEM-SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLT 223
E+ +EQ ++ +EM S+ +G R ++D +S+ KK+IVGHNCF DI HIY F+ LP +
Sbjct: 265 ELYNEQILQLKSEMASVDEEVGLRLLLDAISANKKIIVGHNCFYDILHIYQTFYKDLPES 324
Query: 224 AEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC------------- 270
+EF + PH DTK + S I +ST+L F LC
Sbjct: 325 VQEFKDAWISKHPHTFDTKYIAESQDIFSNN---TSTTLKGLFDHLCATEVGKSVEFVIK 381
Query: 271 --PQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
P +T L + D I N +S H+AGYD+FMT VF + +
Sbjct: 382 PLPNTTWNVPTTLYPLISKRYLNTCGDLINDINVDSVAMHDAGYDSFMTSIVFILQVNAI 441
Query: 329 ----GIDFK---QQSSSENLAHNEKLREH-------------VNLLYLSWTNGEIINLST 368
K +Q++ E E R + VN + L + ++NL
Sbjct: 442 LRSKNTTIKSILEQNTKETRYEGELPRGNHGINKLMSMLEGVVNSIRLVKSQPNVMNL-- 499
Query: 369 GNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD 428
N++SE N H+ ++GFP+ K W+ I+K++ P IS+ +D
Sbjct: 500 -NKSSE----NDMARHF---------YMFGFPNTWKKWE----ITKIWSPL-WISISWID 540
Query: 429 ETAVFV 434
ET+ ++
Sbjct: 541 ETSCWI 546
>gi|37681897|gb|AAQ97826.1| poly(A)-specific ribonuclease [Danio rerio]
Length = 660
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 107/443 (24%), Positives = 184/443 (41%), Gaps = 67/443 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + S T + N+
Sbjct: 113 IDFLASQGFDFNKVFRSGIPYLTQEEECQLREQYEERRGQMNGAGPVSYTPPSGTGVCNV 172
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
P+ + E + LL+N D+ +++P GF
Sbjct: 173 PED--QREFIRSVEEKVEALLKNTDQTLDLEP---------------------CTGF--Q 207
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+ L+ Q + K+ K L + E + + I D++ +E + +Q+ + +
Sbjct: 208 RKLIYQTLNSKYSKGLHVETLETEK---KERFIQISKVDDEERRRREQQKQQR--EQEEL 262
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
++GF VI +S KL+VGHN LD+ H +F GPLP ++F FP ++D
Sbjct: 263 NDAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLLD 322
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDD-IRS 299
TK++ + ++ F + +L L +P E + ++S
Sbjct: 323 TKLMAS----------------TQPFKEIIHNTSLAELHKQLRQKPFRPPTTECPEGLQS 366
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT 359
+ ++ HEAGYDAF+TG F ++LG F S A ++ L N L+L
Sbjct: 367 YDTSTEQLHEAGYDAFITGLCFISMANYLG-SFLTPPKSHISARSKLLEPFYNKLFLM-- 423
Query: 360 NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPT 419
+I++ N + L +++H V+ FP K D+ + S +G
Sbjct: 424 --RVIDIPYLNMSGPDL--QPKRDH---------VLYVTFPKEWKTSDLYQLFS-AFG-- 467
Query: 420 SVISVYHVDETAVFVQFSRAEMV 442
I V VD+T+ FV S+ E V
Sbjct: 468 -NIQVSWVDDTSAFVSLSQTEQV 489
>gi|41055217|ref|NP_957382.1| poly(A)-specific ribonuclease PARN [Danio rerio]
gi|29791562|gb|AAH50496.1| Zgc:56067 [Danio rerio]
Length = 647
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 109/444 (24%), Positives = 187/444 (42%), Gaps = 69/444 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + S T + N+
Sbjct: 113 IDFLASQGFDFNKVFRSGIPYLNQEEECQLREQYEERRGQMNGAGPVSYTPPSGTGVCNV 172
Query: 61 PDILFAERMKDR-LSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS 119
P+ +R R + E + LL+N D+ +++P GF
Sbjct: 173 PE---DQREFIRSVEEKVEALLKNTDQTLDLEP---------------------CTGF-- 206
Query: 120 HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
+ L+ Q + K+ K L V + + + I D++ +E + +Q+ +
Sbjct: 207 QRKLIYQTLNSKYSKGL---HVEALETEKKERFIQISKVDDEERRRREQQKQQR--EQEE 261
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++GF VI +S KL+VGHN LD+ H +F GPLP ++F FP ++
Sbjct: 262 LNDAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLL 321
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDD-IR 298
DTK++ + ++ F + +L L +P E + ++
Sbjct: 322 DTKLMAS----------------TQPFKEIIHNTSLAELHKQLRQKPFRPPTTECPEGLQ 365
Query: 299 SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSW 358
S + ++ HEAGYDAF+TG F ++LG F S A ++ L N L+L
Sbjct: 366 SYDTSTEQLHEAGYDAFITGLCFISMANYLG-SFLTPPKSHISARSKLLEPFYNKLFLM- 423
Query: 359 TNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGP 418
+I++ N + L +++H V+ FP K D+ + S +G
Sbjct: 424 ---RVIDIPYLNMSGPDL--QPKRDH---------VLYVTFPKEWKTSDLYQLFS-AFG- 467
Query: 419 TSVISVYHVDETAVFVQFSRAEMV 442
I V VD+T+ FV S+ E V
Sbjct: 468 --NIQVSWVDDTSAFVSLSQTEQV 489
>gi|60390548|sp|Q7ZU92.2|PARN_DANRE RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease
Length = 660
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 109/444 (24%), Positives = 187/444 (42%), Gaps = 69/444 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + S T + N+
Sbjct: 113 IDFLASQGFDFNKVFRSGIPYLNQEEECQLREQYEERRGQMNGAGPVSYTPPSGTGVCNV 172
Query: 61 PDILFAERMKDR-LSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS 119
P+ +R R + E + LL+N D+ +++P GF
Sbjct: 173 PE---DQREFIRSVEEKVEALLKNTDQTLDLEP---------------------CTGF-- 206
Query: 120 HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
+ L+ Q + K+ K L V + + + I D++ +E + +Q+ +
Sbjct: 207 QRKLIYQTLNSKYSKGL---HVEALETEKKERFIQISKVDDEERRRREQQKQQR--EQEE 261
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++GF VI +S KL+VGHN LD+ H +F GPLP ++F FP ++
Sbjct: 262 LNDAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLL 321
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDD-IR 298
DTK++ + ++ F + +L L +P E + ++
Sbjct: 322 DTKLMAS----------------TQPFKEIIHNTSLAELHKQLRQKPFRPPTTECPEGLQ 365
Query: 299 SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSW 358
S + ++ HEAGYDAF+TG F ++LG F S A ++ L N L+L
Sbjct: 366 SYDTSTEQLHEAGYDAFITGLCFISMANYLG-SFLTPPKSHISARSKLLEPFYNKLFLM- 423
Query: 359 TNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGP 418
+I++ N + L +++H V+ FP K D+ + S +G
Sbjct: 424 ---RVIDIPYLNMSGPDL--QPKRDH---------VLYVTFPKEWKTSDLYQLFS-AFG- 467
Query: 419 TSVISVYHVDETAVFVQFSRAEMV 442
I V VD+T+ FV S+ E V
Sbjct: 468 --NIQVSWVDDTSAFVSLSQTEQV 489
>gi|237649000|ref|NP_001153677.1| poly(A)-specific ribonuclease [Bombyx mori]
gi|224176033|dbj|BAH23570.1| similar to poly(A)-specific ribonuclease, PARN [Bombyx mori]
Length = 628
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 119/451 (26%), Positives = 193/451 (42%), Gaps = 87/451 (19%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN I +G+SY++ E K + N T ++ ++ D H +
Sbjct: 107 LDFLASQGFDFNKLIKDGISYMTVPIECKLRE--NLTERQKTYSKGKDSIKVPDEHKAYV 164
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
DI +++ ++L +EG + + N F
Sbjct: 165 EDIC------NQVHQFL-------EEGQLDEMEID-----------------KCNSFV-- 192
Query: 121 QLLLIQLVVRKHFKDLAYLRVS-GENSCSQNVIVYIESESDKK---MLMKEVKDEQKIDA 176
+LLL Q +R FKD + EN + ++S+ D K L KE + E DA
Sbjct: 193 RLLLFQ-ELRARFKDKILVETKILENKNRLLNVKRVKSQDDLKNHDALKKEREWEDFEDA 251
Query: 177 EMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP 236
+GF V ++S +KL+VGHN LD+ H + FF PLP +F + FP
Sbjct: 252 -------VGFSKVARMISESEKLVVGHNMLLDVMHTLNHFFQPLPAEYTQFKEFTHCMFP 304
Query: 237 HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDD 296
HI+DTK + +S+ + K +S+ L + L+ P +V D+
Sbjct: 305 HILDTKYM---SSLPPFKDKVNSSILKHLLAT-------------LSAAPFSLPKVVSDE 348
Query: 297 IRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKL-REHVNLLY 355
R + HEAGYDA++TG F SHL + + ++ L+ L + +N ++
Sbjct: 349 GRGYSQLHEKHHEAGYDAYVTGLCFLAMHSHLA-NMRGDDTTRFLSITSPLIKPFLNKVF 407
Query: 356 LSWT---NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECI 412
LS T + INL+ E L ++H V FP + W R I
Sbjct: 408 LSRTAHQDSPFINLA----GPEPLPP---RDH---------VFHLAFP---REWQ-RNEI 447
Query: 413 SKVYGPTSVISVYHVDETAVFVQFSRAEMVS 443
++++ P I+V +D+T+ FV +R E +
Sbjct: 448 TQLFSPFGPITVQFIDDTSAFVALARREQAT 478
>gi|156388175|ref|XP_001634577.1| predicted protein [Nematostella vectensis]
gi|156221661|gb|EDO42514.1| predicted protein [Nematostella vectensis]
Length = 640
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 147/336 (43%), Gaps = 49/336 (14%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSW-----HSLKEIRDT 55
+DFL+ + FDF I +G+SYL E K + + S + HS
Sbjct: 152 LDFLSSHNFDFQKWITQGISYLRPYDEQKLRDNFQERQAEHSFGPFTSPPVHSPTGSSTK 211
Query: 56 HLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 115
+++ P I+ E E++ G S+++ D + ++ N
Sbjct: 212 NVYKTPVIVPPEH-----QEFVSGAC------SKIEEMVKDPDGKRTSL-------PPCN 253
Query: 116 GFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 175
G+ LI V+ F+ +L +N + + ++ D K +++ +
Sbjct: 254 GYLRK---LIYQTVKHRFRSGIHLE---KNMNEKKECFIVATKVDDNEKKKFEEEKMAKE 307
Query: 176 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
E+ I++++GF V+ ++S KL+VGHN LD+ HI +FF PLP ++F ++V
Sbjct: 308 DEL-IESAVGFSAVMKMISDSGKLVVGHNMLLDLLHIVDQFFCPLPADLDDFKATVQSLL 366
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVD 295
P ++DTK++ + ++ F P LG HL + P + EV D
Sbjct: 367 PRVLDTKVM----------------ATTQPFKNHLPSTVLGDLVKHLTVSPFRRPEVFTD 410
Query: 296 DIRSSNWNSGVK--HEAGYDAFMTGCVFAQACSHLG 329
+ S + G + HEA YDA++TG F ++LG
Sbjct: 411 Q-QFSLYEEGSENLHEAAYDAYITGLSFVSMANYLG 445
>gi|348540666|ref|XP_003457808.1| PREDICTED: poly(A)-specific ribonuclease PARN [Oreochromis
niloticus]
Length = 679
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 110/459 (23%), Positives = 183/459 (39%), Gaps = 97/459 (21%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + +E R+ H +
Sbjct: 113 IDFLASQGFDFNKVFCHGIPYLNQEEEAQLREQT---------------EERRNQHANGV 157
Query: 61 PDILF------------AERMKD---RLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIF 105
F E KD ++ E + LL N ++ +++P
Sbjct: 158 GTPSFISPSSSKGSSHVPEEHKDFINKVVEKVEALLGNSEKTLDLEP------------- 204
Query: 106 FKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLM 165
GF + L+ Q + K K L V E I ++ E K+
Sbjct: 205 --------CTGF--QRKLIYQTLNWKFPKGLHVETVETEKKERYIQISKVDEEERKR--- 251
Query: 166 KEVKDEQKIDAEMS-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 224
+++QK++ E + ++GF VI +S KL+VGHN LD+ H +F+ PLP
Sbjct: 252 ---REQQKLEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFYCPLPEDL 308
Query: 225 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 284
++F FP ++DTK++ + ++ F L +L L
Sbjct: 309 QDFKEVTMCVFPRLLDTKLMAS----------------TQPFKELITNTSLAELEKQLKE 352
Query: 285 QPSVKVEVEV-DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAH 343
P +VE + S + HEAGYDA++TG F ++LG F + A
Sbjct: 353 SPFKSPQVETAEGFPSYDTAQEQLHEAGYDAYITGLCFIAMANYLG-SFLTPPKAYISAR 411
Query: 344 NEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHL 403
++ + N L+L II++ N T L +++H V+ FP
Sbjct: 412 SKLIEPFFNKLFLM----RIIDIPYLNITGPDL--QPKRDH---------VLYVTFPKEW 456
Query: 404 KAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
K D+ + S +G I V +D+T+ FV S+ + V
Sbjct: 457 KTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSQTDQV 491
>gi|156085621|ref|XP_001610220.1| CAF1 family ribonuclease containing protein [Babesia bovis]
gi|154797472|gb|EDO06652.1| CAF1 family ribonuclease containing protein [Babesia bovis]
Length = 551
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 113/458 (24%), Positives = 182/458 (39%), Gaps = 96/458 (20%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSR----------EQEDKALKHVNSTYEDESLDSWHSLK 50
+ FL FDF++ IH GV +L+ EQ K L H+ ++ ++K
Sbjct: 103 LQFLKDNNFDFHSWIHHGVEHLTPSEESDLKFAIEQRKKELDHMLQQAPPDT-----AVK 157
Query: 51 EIR-DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMR 109
+ D D L AER +R+ W+ +G+ + E+ F
Sbjct: 158 GVDFDLSSLGADDRLMAERTIERIQTWIS-------DGTSAPLEI-----EMESAF---- 201
Query: 110 PAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVK 169
Q LL+ ++ + F + + VI +S+ + L KE
Sbjct: 202 -----------QRLLMHTIIGQQFPQVY---SHSARRGDERVICVYKSQIE---LYKEQL 244
Query: 170 DEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFIS 229
+ D E I IG R + D + + K++VGHNCF DI H+Y F+G LP EEF
Sbjct: 245 STLETDIE-RINEQIGVRVLFDEIVNNGKILVGHNCFYDILHVYQTFYGELPEGVEEFRK 303
Query: 230 SVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA------------LGS 277
S + F + DTK + + + + S +L F +C + L
Sbjct: 304 SWTERFRNTFDTKYIGEFHESVA--APQHSATLRGLFDHMCSTESANKAGQRFRVHTLPG 361
Query: 278 KSTHLALQPSVKVEV----EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACS------H 327
S HL PS + + DI ++ + H+AGYD+FMT VF C H
Sbjct: 362 TSWHL---PSTVLPLLDNGTSTDISTNTGKTTQSHDAGYDSFMTCLVFILQCDRILRSKH 418
Query: 328 LGIDFKQQSSSENLAHN---EKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNH 384
L D +++L HN + L N + L + INLS S+ + +
Sbjct: 419 LKWDRLASDGTDHLDHNTLLDNLSSVSNCIRLVKSQPNAINLS-------SIRQSDMARY 471
Query: 385 YPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVI 422
+ ++ G+P+ + WDI + S ++ SVI
Sbjct: 472 F---------LMSGYPNSWRKWDIMKVWSPLWVSVSVI 500
>gi|170066704|ref|XP_001868194.1| poly(A)-specific ribonuclease [Culex quinquefasciatus]
gi|167862920|gb|EDS26303.1| poly(A)-specific ribonuclease [Culex quinquefasciatus]
Length = 539
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 158/366 (43%), Gaps = 66/366 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTH--LF 58
M FLA + FDFN EG+SY E++ + E + E + + +
Sbjct: 72 MRFLADHGFDFNKLFREGLSYCGEADEERMRMDLKERQEQRAAALEAEEGEEANGNDAVN 131
Query: 59 NIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
+P E++ + E +G L + ++ + + NGF
Sbjct: 132 MVPVPATEEKLMAEIEERIGVFLASEEKDFTI---------------------TNCNGF- 169
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIE--SESDKKMLMKEVKDEQKIDA 176
+ L+ Q++ K K ++ V EN + ++V + E D+K+ ++V E
Sbjct: 170 -QRKLVYQMIEAKFRKQISTSSVELENK-HKGILVERKRTKEQDRKLEQEKVAQEN---- 223
Query: 177 EMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP 236
+ +++++G V+ LS +KLIVGHN LD+ + +FF PLP ++F +V + FP
Sbjct: 224 -VDLESAVGLSLVLQELSKTRKLIVGHNMLLDLMFVIRQFFRPLPYNFQDFKKTVRELFP 282
Query: 237 HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL------CPQIALGSKSTHLALQPSVKV 290
++DTK L + + ++ S+ L F + P++ GS+
Sbjct: 283 LLLDTKYLCTNAEL---KVHVFSSVLGHVFEAVRKEPFKLPEVKSGSEE----------- 328
Query: 291 EVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREH 350
S + + +HEAGYDA++TG F S+ +D NL ++ L+ +
Sbjct: 329 -------HSYSMDQEKQHEAGYDAYLTGLCFLGLASYFKVDLT------NLTNDATLKMY 375
Query: 351 VNLLYL 356
N +YL
Sbjct: 376 FNRIYL 381
>gi|71031200|ref|XP_765242.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352198|gb|EAN32959.1| hypothetical protein, conserved [Theileria parva]
Length = 624
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 131/504 (25%), Positives = 216/504 (42%), Gaps = 99/504 (19%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLS--REQEDKAL-------------KHVNSTYEDESLDS 45
++FL FDFN+ I G+++L+ E+E K+L NS E+ ++
Sbjct: 185 LNFLKDNNFDFNSWIRNGITHLTPKEEEERKSLIVSKLHQIRLNLQNLSNSNIENNGRNT 244
Query: 46 WHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIF 105
+ E + + ++ D E+M +R+++W+ DEG E + + + E+ F
Sbjct: 245 NNMNTEYDVSSIKDLEDRRVVEQMIERINKWI------VDEGDEGRKPL---EFEVESAF 295
Query: 106 FKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLM 165
+ LL+ V+ + +L Y S N + V+VY +M +
Sbjct: 296 LR---------------LLMHSVISIKYPNL-YSNSSQRNGV-RCVVVY-----KTQMEL 333
Query: 166 KEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAE 225
E + + + +I IG R + D +S K++VGHNCF DI HIY F+G LP E
Sbjct: 334 LEEERKVLEEELEAINKQIGLRTLFDTVSKNNKILVGHNCFYDILHIYQTFYGDLPENVE 393
Query: 226 EFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQ 285
+F + FP I DTK + + Q T+L ++ P ++ +L
Sbjct: 394 DFKKKWVQVFPTIFDTKYI---SEYYHQFT--PHTTLKSLYNSFLPNQNGFNRVKISSLG 448
Query: 286 PSVKVEVEVDDIRSSNWNSGVK-HEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHN 344
S V D I N G K HEAGYD+ MT VF + L K ++SS N
Sbjct: 449 KSGMVSGYGDVI-----NEGEKEHEAGYDSLMTAIVFIR---QLETVIKSKNSSLN---- 496
Query: 345 EKLREHVNLL--YLSWTN-------------GEIINLSTGNRTSESLASNKRKNHYPKIL 389
NL+ YL +N GEI+N + S+ + + K
Sbjct: 497 -------NLINAYLDTSNTPNGMGKVIRNIFGEIMNSVRLVKCQPSVINMNNEEDMSKHF 549
Query: 390 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLK 449
+ ++GFP+ K W+I K++ P V S+ +DET+ ++ +E V K ++L
Sbjct: 550 Y-----MFGFPNVWKKWEIM----KIWSPLWV-SISWIDETSCWIIAKNSEDV-KNINLI 598
Query: 450 GSLDRNNDPISVLHPLAKLLEGGN 473
+ +N P L+ + LE N
Sbjct: 599 YKMMKN--PQFKLYNYGQYLEKMN 620
>gi|345485560|ref|XP_001607788.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Nasonia
vitripennis]
Length = 779
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 144/330 (43%), Gaps = 61/330 (18%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPD 62
FLA FDFN EG+ YL++E E+K +N D+ +++R+ L IP
Sbjct: 111 FLANEGFDFNKLFKEGIPYLTKEDEEK----LNKKMVDK--------QKVREEGLDLIP- 157
Query: 63 ILFAERMKDRLSEWLGGL---LRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS 119
++ K ++ E G+ + + D+G E++ N F
Sbjct: 158 --ISDDDKPQIDEICSGIEDYVNSEDDGKELRIE-------------------RCNAFIR 196
Query: 120 HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
L+ R + + L EN ++ I ++ +++ E K+ K++ + +
Sbjct: 197 R---LVHQEARLRWPNKIRLETRNENGNQFIIVSKIGTKEEEEQKETERKERVKLEVQEA 253
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ S+ R + D K+IVGHN LD+ HI +FF PLP + EF S V+ FP ++
Sbjct: 254 VGLSVLLRKIAD----SGKVIVGHNMLLDLCHIIHQFFAPLPESYHEFKSLVHCLFPRLL 309
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTKI+ S Q ++L++ L H A P E E RS
Sbjct: 310 DTKIICQSG----QFKDSVPSNLNQLLETL-----------HSA--PFSIPETENIPDRS 352
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHLG 329
N+ HEAGYDA++TG F C+ LG
Sbjct: 353 YKLNNDKSHEAGYDAYITGLCFIALCNRLG 382
>gi|426254329|ref|XP_004020831.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Ovis
aries]
Length = 577
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 105/449 (23%), Positives = 186/449 (41%), Gaps = 77/449 (17%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHL--- 57
+DFLA FDFN G+ YL++E+E + + Y+++ L S + + T
Sbjct: 52 IDFLASQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRLQS-NGAGALSYTSPNTS 106
Query: 58 ---FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISL 114
IPD ++ D++ E + LL++ + + + P
Sbjct: 107 KCPVTIPDD--QKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC--- 144
Query: 115 NGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKI 174
GF + L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 145 TGF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE- 201
Query: 175 DAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKY 234
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF
Sbjct: 202 ----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCV 257
Query: 235 FPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE- 293
FP ++DTK++ + ++ F + +L L P +VE
Sbjct: 258 FPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVES 301
Query: 294 VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNL 353
+ S + S HEAGYDA++TG F ++LG F S A ++ + N
Sbjct: 302 AEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKSHVSARSKLIEPFFNK 360
Query: 354 LYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECIS 413
L+L ++++ N L +++H V+ FP K D+ + S
Sbjct: 361 LFLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS 405
Query: 414 KVYGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I + +D+T+ FV S+ E V
Sbjct: 406 -AFG---NIQISWIDDTSAFVSLSQPEQV 430
>gi|291390633|ref|XP_002711808.1| PREDICTED: poly(A)-specific ribonuclease (deadenylation nuclease)
[Oryctolagus cuniculus]
Length = 638
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 103/448 (22%), Positives = 186/448 (41%), Gaps = 75/448 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDE--SLDSWHSLKEIRDT--- 55
+DFLA FDFN G+ YL +E+E + + Y+++ + +L +
Sbjct: 113 IDFLASQGFDFNKVFCNGIPYLIQEEE----RQLREQYDEKRSQTNGAGTLAYVSPNASK 168
Query: 56 HLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 115
H IP+ ++ D++ E + LL++ + + + P
Sbjct: 169 HPVTIPED--QKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---T 206
Query: 116 GFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 175
GF + L+ Q + RK+ K + + E VI ++ E K+ + + EQ+
Sbjct: 207 GF--QRKLIYQTLSRKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQRLAKEQE-- 262
Query: 176 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF + F
Sbjct: 263 ---ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTSCVF 319
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-V 294
P ++DTK++ + ++ F + +L L P +VE
Sbjct: 320 PRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFSPPKVESA 363
Query: 295 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLL 354
+ S + S HEAGYDA++TG F ++LG F A ++ + N L
Sbjct: 364 EGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKL 422
Query: 355 YLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISK 414
+L ++++ N L +++H V+ FP K D+ + S
Sbjct: 423 FLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS- 466
Query: 415 VYGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I + +D+T+ FV S+ E V
Sbjct: 467 AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|320165859|gb|EFW42758.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 813
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 102/207 (49%), Gaps = 34/207 (16%)
Query: 159 SDKKMLMKEVKDEQKIDAEMSIKA--------SIGFRHVIDLLSSEKKLIVGHNCFLDIA 210
+++K +E + + ++ A+ IKA +IGFRHVID +S KKL+VGHN LD+A
Sbjct: 295 AEEKAQRQEARTQAQLAAQQEIKALADEMMHQAIGFRHVIDCISEHKKLVVGHNMLLDLA 354
Query: 211 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL- 269
H + KF G LP ++F + + FP++ DTK L S+S L R + ST+L+ L
Sbjct: 355 HTFDKFIGDLPEQLDDFKNQFAQVFPYVADTK-HLASSSELGGRFE--STALADLVRTLL 411
Query: 270 -----CP-QIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVF-- 321
P + L + LQP V + + HEAGYDA++TG F
Sbjct: 412 YESDSAPINVELPDEFNAYPLQP-----VSSSAAAAGAQPNERLHEAGYDAYITGLGFVA 466
Query: 322 -AQACSHLGIDFKQQSSSENLAHNEKL 347
A +HL SE +A N L
Sbjct: 467 LAHKLAHL--------RSERIAQNSAL 485
>gi|348584112|ref|XP_003477816.1| PREDICTED: poly(A)-specific ribonuclease PARN-like isoform 2 [Cavia
porcellus]
Length = 591
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/459 (23%), Positives = 182/459 (39%), Gaps = 97/459 (21%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDK----------------ALKHVNSTYEDESLD 44
+DFLA FDFN G+ YL++E+E + AL +V+ +
Sbjct: 67 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALAYVSPNTSKCPVT 126
Query: 45 SWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETI 104
K+ D + I D+L +E K E G R K ++T+
Sbjct: 127 IPEDQKKFIDQVVEKIEDLLQSEANKTLDLEPCTGFQR---------------KLIYQTL 171
Query: 105 FFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKML 164
+K I + + K Y+ +S N E E ++
Sbjct: 172 SWKYPKGIHIETLETE-------------KKERYIVISKVN----------EEERKRREQ 208
Query: 165 MKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 224
K K++++++ ++GF VI +++ KL+VGHN LD+ H +F+ PLP+
Sbjct: 209 QKHAKEQEELND------AVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPVDL 262
Query: 225 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 284
+EF FP ++DTK++ + ++ F + +L L
Sbjct: 263 KEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKE 306
Query: 285 QPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAH 343
P +VE + S + S HEAGYDA++TG F ++LG F A
Sbjct: 307 TPFSPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSAR 365
Query: 344 NEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHL 403
+E + N L+L ++++ N L +++H V+ FP
Sbjct: 366 SEIIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEW 410
Query: 404 KAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
K+ D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 411 KSSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 445
>gi|348584110|ref|XP_003477815.1| PREDICTED: poly(A)-specific ribonuclease PARN-like isoform 1 [Cavia
porcellus]
Length = 637
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/459 (23%), Positives = 182/459 (39%), Gaps = 97/459 (21%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDK----------------ALKHVNSTYEDESLD 44
+DFLA FDFN G+ YL++E+E + AL +V+ +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALAYVSPNTSKCPVT 172
Query: 45 SWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETI 104
K+ D + I D+L +E K E G R K ++T+
Sbjct: 173 IPEDQKKFIDQVVEKIEDLLQSEANKTLDLEPCTGFQR---------------KLIYQTL 217
Query: 105 FFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKML 164
+K I + + K Y+ +S N E E ++
Sbjct: 218 SWKYPKGIHIETLETE-------------KKERYIVISKVN----------EEERKRREQ 254
Query: 165 MKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 224
K K++++++ ++GF VI +++ KL+VGHN LD+ H +F+ PLP+
Sbjct: 255 QKHAKEQEELND------AVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPVDL 308
Query: 225 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 284
+EF FP ++DTK++ + ++ F + +L L
Sbjct: 309 KEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKE 352
Query: 285 QPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAH 343
P +VE + S + S HEAGYDA++TG F ++LG F A
Sbjct: 353 TPFSPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSAR 411
Query: 344 NEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHL 403
+E + N L+L ++++ N L +++H V+ FP
Sbjct: 412 SEIIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEW 456
Query: 404 KAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
K+ D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 457 KSSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|344292090|ref|XP_003417761.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Loxodonta
africana]
Length = 592
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 189/448 (42%), Gaps = 75/448 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS--WHSLKEIRDTHLF 58
+DFLA FDFN G+ YL++E+E + + Y+++ L S +L + +
Sbjct: 67 IDFLASQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRLQSNGAGALSYV-SPNTS 121
Query: 59 NIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 116
P ++ E+ K D++ E + LL++ DE + + P G
Sbjct: 122 KCPVMVPEEQKKFIDQVVEKIEDLLQS-DENKNLD----------------LEPC---TG 161
Query: 117 FTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDA 176
F + L+ Q + K+ K + + E VI ++ E K+ +++QK
Sbjct: 162 F--QRKLIYQTLSWKYPKGIHIETLETEKKERYIVISKVDEEERKR------REQQKHAK 213
Query: 177 EM-SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
E+ + ++GF VI +++ KL++GHN LD+ H +F+ PLP EF F
Sbjct: 214 ELEGLNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVF 273
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-V 294
P ++DTK++ + ++ F + +L L P +VE
Sbjct: 274 PRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESA 317
Query: 295 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLL 354
+ S + S HEAGYDA++TG F +LG F A ++ + N L
Sbjct: 318 EGFPSYDTASEQLHEAGYDAYITGLCFISMADYLG-SFLSPPKIHVSARSKLIEPFFNKL 376
Query: 355 YLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISK 414
+L ++++ N L +++H V+ FP K D+ + S
Sbjct: 377 FLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS- 420
Query: 415 VYGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I + +D+T+ FV S+ E V
Sbjct: 421 AFG---NIQISWIDDTSAFVSLSQPEQV 445
>gi|301765382|ref|XP_002918111.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Ailuropoda
melanoleuca]
Length = 638
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/447 (23%), Positives = 187/447 (41%), Gaps = 73/447 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS--WHSLKEIRDTHLF 58
+DFLA FDFN G+ YL++E+E + + Y+++ L S +L + +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRLQSNGAGTLSYV-SPNTS 167
Query: 59 NIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 116
P + ++ K D++ E + LL++ + + + P G
Sbjct: 168 KCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TG 207
Query: 117 FTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDA 176
F + L+ Q + K+ K + + E VI ++ E K+ +++ EQ+
Sbjct: 208 F--QRKLIYQTLSWKYPKGIHVDTLETEKKERYIVISKVDEEERKRREQQKLAKEQE--- 262
Query: 177 EMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP 236
+ ++GF VI +++ KLI+GHN LD+ H +F+ PLP EF FP
Sbjct: 263 --ELNDAVGFSRVIHAIANSGKLIIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFP 320
Query: 237 HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VD 295
++DTK++ + ++ F + +L L P +VE +
Sbjct: 321 RLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAE 364
Query: 296 DIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLY 355
S + + HEAGYDA++TG F ++LG F A ++ + N L+
Sbjct: 365 GFPSYDTATEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLF 423
Query: 356 LSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKV 415
L ++++ N L +++H V+ FP K D+ + S
Sbjct: 424 LM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-A 467
Query: 416 YGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I + +D+T+ FV S+ E V
Sbjct: 468 FG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|149725913|ref|XP_001490195.1| PREDICTED: poly(A)-specific ribonuclease PARN-like isoform 1 [Equus
caballus]
Length = 637
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/448 (23%), Positives = 188/448 (41%), Gaps = 75/448 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS--WHSLKEIRDTHLF 58
+DFLA FDFN G+ YL++E+E + + Y+++ L S +L + +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRLQSNGAGALSYV-SPNTS 167
Query: 59 NIPDILFAERMK--DRLSEWLGGLLRNR-DEGSEVQPSFNDSKQQFETIFFKMRPAISLN 115
P + ++ K D + E + LL++ D+ +++P
Sbjct: 168 KCPVTIPEDQKKFIDHVIEKIEDLLQSEEDKNLDLEP---------------------CT 206
Query: 116 GFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 175
GF + L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 207 GF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE-- 262
Query: 176 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF F
Sbjct: 263 ---ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVF 319
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-V 294
P ++DTK++ + ++ F + +L L P +VE
Sbjct: 320 PRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESA 363
Query: 295 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLL 354
+ S + S HEAGYDA++TG F ++LG F + A ++ + N L
Sbjct: 364 EGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGT-FLSPPKTHVSARSKLVEPFFNKL 422
Query: 355 YLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISK 414
+L ++++ N L +++H V+ FP K D+ + S
Sbjct: 423 FLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS- 466
Query: 415 VYGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I + +D+T+ FV S+ E V
Sbjct: 467 AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|155371965|ref|NP_001094588.1| poly(A)-specific ribonuclease PARN [Bos taurus]
gi|223590122|sp|P69341.2|PARN_BOVIN RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Deadenylating nuclease; AltName: Full=Deadenylation
nuclease; AltName: Full=Polyadenylate-specific
ribonuclease
gi|151556271|gb|AAI50016.1| PARN protein [Bos taurus]
gi|296473404|tpg|DAA15519.1| TPA: poly(A)-specific ribonuclease PARN [Bos taurus]
Length = 638
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/444 (22%), Positives = 181/444 (40%), Gaps = 67/444 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHL-FN 59
+DFLA FDFN G+ YL++E+E + + + + S +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYTSPNTSKCPVT 172
Query: 60 IPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS 119
IPD ++ D++ E + LL++ + + + P GF
Sbjct: 173 IPDD--QKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF-- 208
Query: 120 HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 209 QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE-----E 263
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP ++
Sbjct: 264 LNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLL 323
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIR 298
DTK++ + ++ F + +L L P +VE +
Sbjct: 324 DTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFP 367
Query: 299 SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSW 358
S + S HEAGYDA++TG F ++LG F S A ++ + N L+L
Sbjct: 368 SYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKSHVSARSKLIEPFFNKLFLM- 425
Query: 359 TNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGP 418
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 426 ---RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG- 469
Query: 419 TSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 470 --NIQISWIDDTSAFVSLSQPEQV 491
>gi|440804573|gb|ELR25450.1| RNA binding domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 631
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 130/288 (45%), Gaps = 54/288 (18%)
Query: 159 SDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFG 218
SD++ K + Q+ DAE+ +A++GFR VID+L+ KK +VGHN LD+ H S F
Sbjct: 229 SDEERSAKRQEKAQQGDAEL--EAAVGFRRVIDVLTEAKKPVVGHNLLLDLVHTLS-FLQ 285
Query: 219 PLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSK 278
P T+++F S ++ FP I+DTK +++S+ L + C ALG
Sbjct: 286 LPPPTSDQFKSQLHSLFPTIVDTKFVVSSSPELVSQ---------------CASTALG-- 328
Query: 279 STHLALQPSVKVEVEVDDIRSSNWNSGVK---------HEAGYDAFMTGCVFAQACSHLG 329
TH A D + ++ +G HEAG+DA +TG + + HL
Sbjct: 329 DTHAAFD-----GPRFQDRPAISFPAGFGAYAEDKSRFHEAGFDALITGVAYLRMAYHLA 383
Query: 330 IDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKIL 389
+ + S+ + L + E+ N L+L ++ NL+ + T +
Sbjct: 384 -EARTGSADDLLPTGPLMEEYRNKLFLLRSDIPYYNLAGPDPTPDRAG------------ 430
Query: 390 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFS 437
+ V F L+ D I + +G + V VD+T++F+ S
Sbjct: 431 ---VFYVHNFSPSLRTGD----IVRHFGSFGRVFVNWVDDTSLFITLS 471
>gi|440896814|gb|ELR48641.1| Poly(A)-specific ribonuclease PARN, partial [Bos grunniens mutus]
Length = 617
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/444 (22%), Positives = 181/444 (40%), Gaps = 67/444 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHL-FN 59
+DFLA FDFN G+ YL++E+E + + + + S +
Sbjct: 108 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYTSPNTSKCPVT 167
Query: 60 IPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS 119
IPD ++ D++ E + LL++ + + + P GF
Sbjct: 168 IPDD--QKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF-- 203
Query: 120 HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 204 QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE-----E 258
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP ++
Sbjct: 259 LNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLL 318
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIR 298
DTK++ + ++ F + +L L P +VE +
Sbjct: 319 DTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFP 362
Query: 299 SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSW 358
S + S HEAGYDA++TG F ++LG F S A ++ + N L+L
Sbjct: 363 SYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKSHVSARSKLIEPFFNKLFLM- 420
Query: 359 TNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGP 418
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 421 ---RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG- 464
Query: 419 TSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 465 --NIQISWIDDTSAFVSLSQPEQV 486
>gi|344292088|ref|XP_003417760.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Loxodonta
africana]
Length = 638
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 189/448 (42%), Gaps = 75/448 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS--WHSLKEIRDTHLF 58
+DFLA FDFN G+ YL++E+E + + Y+++ L S +L + +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRLQSNGAGALSYV-SPNTS 167
Query: 59 NIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 116
P ++ E+ K D++ E + LL++ DE + + P G
Sbjct: 168 KCPVMVPEEQKKFIDQVVEKIEDLLQS-DENKNLD----------------LEPC---TG 207
Query: 117 FTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDA 176
F + L+ Q + K+ K + + E VI ++ E K+ +++QK
Sbjct: 208 F--QRKLIYQTLSWKYPKGIHIETLETEKKERYIVISKVDEEERKR------REQQKHAK 259
Query: 177 EM-SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
E+ + ++GF VI +++ KL++GHN LD+ H +F+ PLP EF F
Sbjct: 260 ELEGLNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVF 319
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-V 294
P ++DTK++ + ++ F + +L L P +VE
Sbjct: 320 PRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESA 363
Query: 295 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLL 354
+ S + S HEAGYDA++TG F +LG F A ++ + N L
Sbjct: 364 EGFPSYDTASEQLHEAGYDAYITGLCFISMADYLG-SFLSPPKIHVSARSKLIEPFFNKL 422
Query: 355 YLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISK 414
+L ++++ N L +++H V+ FP K D+ + S
Sbjct: 423 FLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS- 466
Query: 415 VYGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I + +D+T+ FV S+ E V
Sbjct: 467 AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|326928857|ref|XP_003210589.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Meleagris
gallopavo]
Length = 574
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/448 (23%), Positives = 187/448 (41%), Gaps = 75/448 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDE--SLDSWHSLKEIRDTHLF 58
+DFLA FDFN G+ YL++E+E + + Y+++ + SL I +
Sbjct: 52 IDFLANQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRSQANGAGSLSYI-SPNAT 106
Query: 59 NIPDILFAERMK--DRLSEWLGGLLRN-RDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 115
P + ++ K D++ E + L+N +E E++P
Sbjct: 107 KCPVAIPEDQKKFIDKIVEQIEEFLKNNENESLELEP---------------------CT 145
Query: 116 GFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 175
GF + L+ Q + K+ K + + + VI ++ E K+ ++ EQ+
Sbjct: 146 GF--QRKLIYQTLSWKYPKGIHVETLESDKKERYIVISKVDEEERKRREQQKQAKEQE-- 201
Query: 176 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
+ ++GF V+ +++ KL++GHN LD+ H +F+ PLP EF + F
Sbjct: 202 ---ELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQFYCPLPDDLSEFKEVTSCVF 258
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-V 294
P ++DTK++ + ++ F + +L L P +VE
Sbjct: 259 PRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKEVPFSPPKVESA 302
Query: 295 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLL 354
+ S + S HEAGYDA++TG F + LG F + A ++ + N L
Sbjct: 303 EGFPSYDTASEQLHEAGYDAYITGLCFISMANFLG-SFLSPPKNHVSARSKLIEPFFNKL 361
Query: 355 YLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISK 414
+L ++++ N L +++H V+ FP K D+ + S
Sbjct: 362 FLM----RVMDIPYLNLQGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS- 405
Query: 415 VYGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I V +D+T+ FV S+ E V
Sbjct: 406 AFG---NIQVSWIDDTSAFVSLSQPEQV 430
>gi|380013456|ref|XP_003690772.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Apis florea]
Length = 515
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 127/272 (46%), Gaps = 38/272 (13%)
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
I+ ++G ++ ++ +KLIVGHN LD+ HI +FFG LP + EF S V+ FP I+
Sbjct: 248 IQQAVGLSILMRKIADSEKLIVGHNMLLDLCHIVHQFFGQLPESYLEFKSLVHSLFPRIL 307
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTKI+ +S Q+ K++ P LG ++ P EVE D RS
Sbjct: 308 DTKIICHS-----QQFKEN-----------IPSSNLGILLETVSKSPFKITEVEPTDGRS 351
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVN-LLYLSW 358
+ S HEAGYDA++TG F ++LG ++ S L+ + L +N LL
Sbjct: 352 YSTLSEKCHEAGYDAYITGICFIALSNYLG-SLQKPEVSIVLSDSPLLNPFLNKLLIARL 410
Query: 359 TNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGP 418
+ INL + N ++H V FP K W + IS ++ P
Sbjct: 411 KDVPYINLVGDD-------PNPSRDH---------VFHLTFP---KEWKFND-ISHLFSP 450
Query: 419 TSVISVYHVDETAVFVQFSRAEMVSKFLDLKG 450
+ V + + + +++ R + V++ + + G
Sbjct: 451 FGSVHVSWLSDISAYIELHRRDQVNEVMKVLG 482
>gi|281340599|gb|EFB16183.1| hypothetical protein PANDA_006508 [Ailuropoda melanoleuca]
Length = 615
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/447 (23%), Positives = 187/447 (41%), Gaps = 73/447 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS--WHSLKEIRDTHLF 58
+DFLA FDFN G+ YL++E+E + + Y+++ L S +L + +
Sbjct: 106 IDFLASQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRLQSNGAGTLSYV-SPNTS 160
Query: 59 NIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 116
P + ++ K D++ E + LL++ + + + P G
Sbjct: 161 KCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TG 200
Query: 117 FTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDA 176
F + L+ Q + K+ K + + E VI ++ E K+ +++ EQ+
Sbjct: 201 F--QRKLIYQTLSWKYPKGIHVDTLETEKKERYIVISKVDEEERKRREQQKLAKEQE--- 255
Query: 177 EMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP 236
+ ++GF VI +++ KLI+GHN LD+ H +F+ PLP EF FP
Sbjct: 256 --ELNDAVGFSRVIHAIANSGKLIIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFP 313
Query: 237 HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VD 295
++DTK++ + ++ F + +L L P +VE +
Sbjct: 314 RLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAE 357
Query: 296 DIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLY 355
S + + HEAGYDA++TG F ++LG F A ++ + N L+
Sbjct: 358 GFPSYDTATEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLF 416
Query: 356 LSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKV 415
L ++++ N L +++H V+ FP K D+ + S
Sbjct: 417 LM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-A 460
Query: 416 YGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I + +D+T+ FV S+ E V
Sbjct: 461 FG---NIQISWIDDTSAFVSLSQPEQV 484
>gi|89273974|emb|CAJ81781.1| Novel protein similar to poly(A)-specific ribonuclease
(deadenylation nuclease) [Xenopus (Silurana) tropicalis]
Length = 424
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 127/294 (43%), Gaps = 44/294 (14%)
Query: 151 VIVYIESESDKKM-LMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDI 209
VI ++ E K+M K+ K+ +++D ++GF +I +SS KL+VGHN LDI
Sbjct: 31 VISKVDEEERKRMEQQKQAKEREELDD------AVGFSRIIQAISSSGKLVVGHNMLLDI 84
Query: 210 AHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVL 269
H +FF LP EF N FP ++DTK++ ++N F +
Sbjct: 85 MHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMASTN----------------PFKEI 128
Query: 270 CPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+L L P +V+ + S N S HEAGYDA++TG F ++L
Sbjct: 129 IYNTSLAELEKRLKEAPFKPPKVDSAEGFPSYNTASEQLHEAGYDAYITGLCFISMANYL 188
Query: 329 GIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKI 388
G F + ++ +R N L+L I+++ N L KR N
Sbjct: 189 G-SFLSPPKGYVSSRSKIIRPFFNKLFLM----RIMDIPYLNLEGPDLQP-KRDN----- 237
Query: 389 LFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
V+ FP K D+ + S +G I V +D+T+ FV S + V
Sbjct: 238 -----VLHVAFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSHPDQV 282
>gi|443429421|gb|AGC92706.1| poly(A)-specific ribonuclease PARN-like protein [Heliconius erato]
Length = 586
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 101/379 (26%), Positives = 159/379 (41%), Gaps = 68/379 (17%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFL+ FDFN I EG+SY+S E + + N T + + I D H I
Sbjct: 107 LDFLSSQGFDFNKLIREGISYMSEPIESRLRE--NLTERQSRIINDKDPIVIPDEHKSQI 164
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
DI +R++ L E N+ + ++ N F
Sbjct: 165 EDI--CKRVRTFLDE-------NKTDEMDID---------------------RCNAFI-R 193
Query: 121 QLLLIQLVVRKHFKDLAYLRVSG-ENSCSQNVIVYIESESDKKMLMKEVKDEQK-IDAEM 178
+LL +L R FKD A++ EN + I+S S+ K KD+QK
Sbjct: 194 RLLFQELGSR--FKDEAFVETKVLENKSRVLKVTRIKSPSESKS-----KDDQKREKEWE 246
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF V ++S +KL++GHN LD+ H S FF PLP F + FP +
Sbjct: 247 EFEEAVGFSKVARMISQSEKLVIGHNMLLDVLHTLSHFFQPLPEDYASFKEFAHCMFPRL 306
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLC-PQIALGSKSTHLALQPSVKVEVEVDDI 297
+DTK + +S+ + K +ST L L P AL E+ +
Sbjct: 307 LDTKYM---SSLPPFKDKVASTVLPHLLQTLSEPPFALP----------------EIPSL 347
Query: 298 RSSNWNSGV--KHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLY 355
S + +HEAGYDA++TG F +H+ + + + L+ +N LY
Sbjct: 348 PSRGYTCAQDKQHEAGYDAYVTGLCFLAMHAHV-TRMRGERCTRVTPDAAVLKPFINKLY 406
Query: 356 LSWT---NGEIINLSTGNR 371
L+ T + I+L+ +R
Sbjct: 407 LAKTAHQDSPYIHLAGADR 425
>gi|355709311|gb|AES03549.1| polyA-specific ribonuclease [Mustela putorius furo]
Length = 482
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 102/448 (22%), Positives = 186/448 (41%), Gaps = 75/448 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS--WHSLKEIRDTH-- 56
+DFLA FDFN G+ YL++E+E + + Y+++ L S +L +
Sbjct: 103 IDFLASQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRLQSNGAGALSYVSPNTSK 158
Query: 57 -LFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 115
IP+ ++ D++ E + LL++ + + + P
Sbjct: 159 CPVTIPED--QKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---T 196
Query: 116 GFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 175
GF + L+ Q + K+ K + + E VI ++ E K+ +++ EQ+
Sbjct: 197 GF--QRKLIYQTLSWKYPKGIHVDTLETEKKERYIVISKVDEEERKRREQQKLAKEQE-- 252
Query: 176 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF F
Sbjct: 253 ---ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVF 309
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-V 294
P ++DTK++ + ++ F + +L L P +VE
Sbjct: 310 PRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESA 353
Query: 295 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLL 354
+ S + + HEAGYDA++TG F ++LG F A ++ + N L
Sbjct: 354 EGFPSYDTATEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKL 412
Query: 355 YLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISK 414
+L ++++ N L +++H V+ FP K D+ + S
Sbjct: 413 FLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS- 456
Query: 415 VYGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I + +D+T+ FV S+ E V
Sbjct: 457 AFG---NIQISWIDDTSAFVSLSQPEQV 481
>gi|345802287|ref|XP_003434899.1| PREDICTED: poly(A)-specific ribonuclease PARN [Canis lupus
familiaris]
Length = 592
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 103/447 (23%), Positives = 186/447 (41%), Gaps = 73/447 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS--WHSLKEIRDTHLF 58
+DFLA FDFN G+ YL+ E+E + + Y+++ L S +L + +
Sbjct: 67 IDFLASQGFDFNKVFRNGIPYLNHEEE----RQLREQYDEKRLQSNGAGALSYV-SPNTS 121
Query: 59 NIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 116
P + ++ K D++ E + LL++ E+ + P G
Sbjct: 122 KCPVTIPEDQKKFIDQVVEKIENLLQSE-----------------ESKNLDLEPC---TG 161
Query: 117 FTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDA 176
F + L+ Q + K+ K + + E VI ++ E K+ +++ EQ+
Sbjct: 162 F--QRKLIYQTLSWKYPKGIHVDTLETEKKERYIVISKVDEEERKRREQQKLAKEQE--- 216
Query: 177 EMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP 236
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP
Sbjct: 217 --ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFP 274
Query: 237 HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VD 295
++DTK++ + ++ F + +L L P +VE +
Sbjct: 275 RLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAE 318
Query: 296 DIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLY 355
S + + HEAGYDA++TG F ++LG F A ++ + N L+
Sbjct: 319 GFPSYDTATEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLF 377
Query: 356 LSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKV 415
L ++++ N L +++H V+ FP K D+ + S
Sbjct: 378 LM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-A 421
Query: 416 YGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I + +D+T+ FV S+ E V
Sbjct: 422 FG---NIHISWIDDTSAFVSLSQPEQV 445
>gi|449277827|gb|EMC85849.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein
1, partial [Columba livia]
Length = 485
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 150/348 (43%), Gaps = 101/348 (29%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL+ Y FD+N + +G+ Y++ EQE +H+ + SW ++
Sbjct: 66 IQFLSHYGFDYNKFLKDGIPYMNEEQEKIFSQHLLA-------GSWKVSSDLDR------ 112
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D+L ++ D ++ W+ D+ + L+ + +
Sbjct: 113 -DVL--KKAIDEVTCWIAA--AEEDD------------------------TMVLHDLSGY 143
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQK------- 173
Q+ +QLV+R+ ++ V+ + DKK+++K+V + +
Sbjct: 144 QMFEVQLVLRQALQN-----------------VWTQPLGDKKVIVKKVSFQHRQLLENSP 186
Query: 174 ---IDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISS 230
E+ + ++ GF ++ L KK +VGHN +D+ H++ KF+ PLP + EEF +
Sbjct: 187 HDCCQKELILLSARGFTNLFQTLVKAKKPLVGHNMLMDLMHLHDKFYKPLPESYEEFKRN 246
Query: 231 VNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC----------PQIALGSKST 280
++ FP +IDTK + + SI ++ ++L + + VLC P I L S +
Sbjct: 247 IHILFPVLIDTKTI--TKSIWKKYPFPRVSNLLEVYEVLCRNLNPTDPASPVITLASDCS 304
Query: 281 HLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
A + S HEAGYDAF+ G V ++ +HL
Sbjct: 305 RYAEKKS-------------------PHEAGYDAFLCGSVLLKS-AHL 332
>gi|325191502|emb|CCA26275.1| Poly(A)specific ribonuclease PARNlike protein putati [Albugo
laibachii Nc14]
Length = 713
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 148/341 (43%), Gaps = 52/341 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSY-------LSREQEDKALKHVNSTYEDESLDSWHSLKEIR 53
+ FLA++ FDFN I++G+S+ + +++ +K ++ ED S L
Sbjct: 176 LQFLAEHDFDFNKFIYDGISFCKLSKVSMMQKRLEKQVEQYRQQQEDGCKPSVLQL---- 231
Query: 54 DTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAIS 113
++ F + +++ + ++L EG +VQ +SK+ F
Sbjct: 232 -----DVQGKKFQQHVREMVDDFLKE--ETLIEGVDVQQ--QESKELF------------ 270
Query: 114 LNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQK 173
L TS+Q ++I +R +L S + + + + + +KK LM+E ++ +
Sbjct: 271 LEAKTSYQRMIIYQTIRAIDTNL------HAKSVDEGIQIRLVTSEEKKQLMEEKLEQMR 324
Query: 174 IDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNK 233
+ +IGF VI +L K IVGHN LD +IY +F PLP +EF +
Sbjct: 325 SET----NEAIGFSRVIQVLKDSNKPIVGHNALLDFIYIYHQFCQPLPNDLKEFKKELTH 380
Query: 234 YFPHIIDTKILLNS---NSILQQRMKKSSTSLSKAFSVLCPQIALGS----KSTHLALQP 286
FP I DTK + N L+ S K L P + S + H+ALQ
Sbjct: 381 SFPKIYDTKYMATHSALNDELESSSLSSLFEFMKGRIDLPPSTLISSHENFRRYHVALQS 440
Query: 287 SVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 327
E E+D + S + HEAG+DAFMT F H
Sbjct: 441 ESSDEEEMD---QPSKPSPLCHEAGFDAFMTAYCFLGLLHH 478
>gi|296219599|ref|XP_002755955.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Callithrix
jacchus]
Length = 639
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 103/459 (22%), Positives = 176/459 (38%), Gaps = 97/459 (21%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDK----------------ALKHVNSTYEDESLD 44
+DFLA FDFN G+ YL++E+E + AL +V+ +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVT 172
Query: 45 SWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETI 104
K+ D + I D+L +E K+ E G R
Sbjct: 173 VPEDQKKFIDEVVEKIEDLLQSEENKNLDLEPCTGFQRK--------------------- 211
Query: 105 FFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKML 164
L+ Q + K+ K + + E VI ++ E K+
Sbjct: 212 ------------------LIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRRE 253
Query: 165 MKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 224
++ EQ+ + ++GF VI +++ KL++GHN LD+ H +F+ PLP
Sbjct: 254 QQKHAKEQE-----ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADL 308
Query: 225 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 284
EF FP ++DTK++ + ++ F + +L L
Sbjct: 309 NEFKEMTTCVFPRLLDTKLMAS----------------TRPFKDIINNTSLAELEKRLKE 352
Query: 285 QPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAH 343
P +VE + S + S HEAGYDA++TG F ++LG F + A
Sbjct: 353 TPFSPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKTHVSAR 411
Query: 344 NEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHL 403
++ + N L+L ++++ N L +++H V+ FP
Sbjct: 412 SKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEW 456
Query: 404 KAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 457 KTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|332240353|ref|XP_003269352.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Nomascus
leucogenys]
Length = 578
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 101/446 (22%), Positives = 185/446 (41%), Gaps = 71/446 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDE--SLDSWHSLKEIR-DTHL 57
+DFLA FDFN G+ YL++E+E + + Y+++ + +L + +T
Sbjct: 52 IDFLASQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRSQANGAGALSYVSPNTSK 107
Query: 58 FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGF 117
+P ++ D++ E + LL++ + + + P GF
Sbjct: 108 CPVPIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF 147
Query: 118 TSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE 177
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 148 --QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE---- 201
Query: 178 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 237
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP
Sbjct: 202 -ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPR 260
Query: 238 IIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDD 296
++DTK++ + ++ F + +L L P +VE +
Sbjct: 261 LLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEG 304
Query: 297 IRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYL 356
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 305 FPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFL 363
Query: 357 SWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVY 416
++++ N L +++H V+ FP K D+ + S +
Sbjct: 364 M----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AF 407
Query: 417 GPTSVISVYHVDETAVFVQFSRAEMV 442
G I + +D+T+ FV S+ E V
Sbjct: 408 G---NIQISWIDDTSAFVSLSQPEQV 430
>gi|332240355|ref|XP_003269353.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Nomascus
leucogenys]
Length = 593
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 101/446 (22%), Positives = 185/446 (41%), Gaps = 71/446 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDE--SLDSWHSLKEIR-DTHL 57
+DFLA FDFN G+ YL++E+E + + Y+++ + +L + +T
Sbjct: 67 IDFLASQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRSQANGAGALSYVSPNTSK 122
Query: 58 FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGF 117
+P ++ D++ E + LL++ + + + P GF
Sbjct: 123 CPVPIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF 162
Query: 118 TSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE 177
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 163 --QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE---- 216
Query: 178 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 237
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP
Sbjct: 217 -ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPR 275
Query: 238 IIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDD 296
++DTK++ + ++ F + +L L P +VE +
Sbjct: 276 LLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEG 319
Query: 297 IRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYL 356
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 320 FPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFL 378
Query: 357 SWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVY 416
++++ N L +++H V+ FP K D+ + S +
Sbjct: 379 M----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AF 422
Query: 417 GPTSVISVYHVDETAVFVQFSRAEMV 442
G I + +D+T+ FV S+ E V
Sbjct: 423 G---NIQISWIDDTSAFVSLSQPEQV 445
>gi|332240351|ref|XP_003269351.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Nomascus
leucogenys]
Length = 639
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 101/446 (22%), Positives = 185/446 (41%), Gaps = 71/446 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDE--SLDSWHSLKEIR-DTHL 57
+DFLA FDFN G+ YL++E+E + + Y+++ + +L + +T
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRSQANGAGALSYVSPNTSK 168
Query: 58 FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGF 117
+P ++ D++ E + LL++ + + + P GF
Sbjct: 169 CPVPIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF 208
Query: 118 TSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE 177
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 209 --QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE---- 262
Query: 178 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 237
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP
Sbjct: 263 -ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPR 321
Query: 238 IIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDD 296
++DTK++ + ++ F + +L L P +VE +
Sbjct: 322 LLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEG 365
Query: 297 IRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYL 356
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 366 FPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFL 424
Query: 357 SWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVY 416
++++ N L +++H V+ FP K D+ + S +
Sbjct: 425 M----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AF 468
Query: 417 GPTSVISVYHVDETAVFVQFSRAEMV 442
G I + +D+T+ FV S+ E V
Sbjct: 469 G---NIQISWIDDTSAFVSLSQPEQV 491
>gi|73958883|ref|XP_536966.2| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Canis
lupus familiaris]
Length = 638
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 102/447 (22%), Positives = 186/447 (41%), Gaps = 73/447 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS--WHSLKEIRDTHLF 58
+DFLA FDFN G+ YL+ E+E + + Y+++ L S +L + +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNHEEE----RQLREQYDEKRLQSNGAGALSYV-SPNTS 167
Query: 59 NIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 116
P + ++ K D++ E + LL++ + + + P G
Sbjct: 168 KCPVTIPEDQKKFIDQVVEKIENLLQSEESKN-----------------LDLEPC---TG 207
Query: 117 FTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDA 176
F + L+ Q + K+ K + + E VI ++ E K+ +++ EQ+
Sbjct: 208 F--QRKLIYQTLSWKYPKGIHVDTLETEKKERYIVISKVDEEERKRREQQKLAKEQE--- 262
Query: 177 EMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP 236
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP
Sbjct: 263 --ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFP 320
Query: 237 HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VD 295
++DTK++ + ++ F + +L L P +VE +
Sbjct: 321 RLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAE 364
Query: 296 DIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLY 355
S + + HEAGYDA++TG F ++LG F A ++ + N L+
Sbjct: 365 GFPSYDTATEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLF 423
Query: 356 LSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKV 415
L ++++ N L +++H V+ FP K D+ + S
Sbjct: 424 LM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-A 467
Query: 416 YGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I + +D+T+ FV S+ E V
Sbjct: 468 FG---NIHISWIDDTSAFVSLSQPEQV 491
>gi|334333099|ref|XP_001375777.2| PREDICTED: poly(A)-specific ribonuclease PARN [Monodelphis
domestica]
Length = 709
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 103/445 (23%), Positives = 181/445 (40%), Gaps = 69/445 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 113 IDFLANQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQSNGAGALSYISPNASKC 169
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P I+ ++ K D++ E + L++N + + + P GF
Sbjct: 170 PVIIPEDQKKFIDKVVEKIEDLIQNEENKN-----------------LDLEPC---TGF- 208
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 209 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 262
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 263 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTIHQFYCPLPEDLSEFKEVTTCVFPRL 322
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 323 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKEAPFNPPKVESAEGF 366
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + S HEAGYDA++TG F + LG F A ++ + N L+L
Sbjct: 367 PSYDTASEQLHEAGYDAYITGLCFISMANFLG-SFLSPPKIHVSARSKLIEPFFNKLFLM 425
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 426 ----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG 469
Query: 418 PTSVISVYHVDETAVFVQFSRAEMV 442
I V +D+T+ FV S+ E V
Sbjct: 470 ---NIQVSWIDDTSAFVSLSQPEQV 491
>gi|410985167|ref|XP_003998895.1| PREDICTED: poly(A)-specific ribonuclease PARN [Felis catus]
Length = 638
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 102/448 (22%), Positives = 185/448 (41%), Gaps = 75/448 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS--WHSLKEIRDTH-- 56
+DFLA FDFN G+ YL++E+E + + Y+++ L S +L +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRLQSNGAGTLSYVSPNASK 168
Query: 57 -LFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 115
IP+ ++ D++ E + LL++ + + + P
Sbjct: 169 CPVTIPED--QKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---T 206
Query: 116 GFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 175
GF + L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 207 GF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE-- 262
Query: 176 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF F
Sbjct: 263 ---ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVF 319
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-V 294
P ++DTK++ + ++ F + +L L P +VE
Sbjct: 320 PRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESA 363
Query: 295 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLL 354
+ S + + HEAGYDA++TG F ++LG F A ++ + N L
Sbjct: 364 EGFPSYDTATEQLHEAGYDAYITGLCFLSMANYLG-SFLSPPKIHVSARSKLIEPFFNKL 422
Query: 355 YLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISK 414
+L ++++ N L +++H V+ FP K D+ + S
Sbjct: 423 FLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS- 466
Query: 415 VYGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I + +D+T+ FV S+ E V
Sbjct: 467 AFG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|363731664|ref|XP_426152.3| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Gallus gallus]
Length = 577
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/411 (21%), Positives = 168/411 (40%), Gaps = 91/411 (22%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL+ Y FD+N + +G+ Y++ QE+ + + +W +
Sbjct: 155 IQFLSHYGFDYNKFLKDGIPYMNELQENILSQRLLE-------GNWKVCSAL-------- 199
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
++ ++ D ++ W+ EG V L +
Sbjct: 200 -NLNVVKKAIDEVTCWIAA----AKEGDTV----------------------ILQDLSDS 232
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
Q+L +QLV+R+ ++ + + G+N V+V S +++L E E+ +
Sbjct: 233 QMLDVQLVLRQALPNV-WTQPLGDNE----VMVKKVSLQHRRLL--ESSSHDSCQKELIL 285
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
++ GF ++ ++ KK +VGHN +D+ H++ KF+ PLP + EEF +++ FP +ID
Sbjct: 286 TSARGFTNLFQIIVRAKKPLVGHNMLMDLCHLHDKFYNPLPESYEEFKKNIHHLFPVLID 345
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVL-----------CPQIALGSKSTHLALQPSVK 289
TK + + SI + ++L + + VL CP IA S S A
Sbjct: 346 TKTV--TKSIWKNYQFPRVSNLLEVYEVLCSSDLNPVDPACPVIAFASDSARYA------ 397
Query: 290 VEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLRE 349
HEA YDAF+ G V ++ L + +++ N + ++ L
Sbjct: 398 -------------EKAAPHEAAYDAFLCGSVLLKSAHLLLCELTDDAATANPSFSQYLT- 443
Query: 350 HVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFP 400
+ + N +N G +S + + YP L +V V G+P
Sbjct: 444 ----MLAEYFNK--VNFIRGGVSSINFSGEDASCRYPPPL---VVCVRGWP 485
>gi|432108569|gb|ELK33278.1| Poly(A)-specific ribonuclease PARN [Myotis davidii]
Length = 604
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 105/448 (23%), Positives = 187/448 (41%), Gaps = 75/448 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS--WHSLKEIRDTHLF 58
+DFLA FDFN G+ YL++E+E + + Y+++ L S +L + +
Sbjct: 214 IDFLASQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRLQSNGAGALSYV-SPNTS 268
Query: 59 NIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 116
P + ++ K D++ E + LL++ + + + L+
Sbjct: 269 KCPVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------------LDLDP 305
Query: 117 FTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 175
T Q LI Q + K+ K + + E V+ ++ E K+ ++ EQ+
Sbjct: 306 CTGFQRKLIYQTLNWKYPKGIHVETLETEKKERYIVVSKVDEEERKRREQQKHAKEQE-- 363
Query: 176 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
+ ++GF VI +++ KLI+GHN LD+ H +F PLP EF F
Sbjct: 364 ---ELNDAVGFSRVIHAIANSGKLIIGHNMLLDVMHTVHQFCCPLPEDLNEFKEMTTSVF 420
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-V 294
P ++DTK++ + ++ F + +L L P +VE
Sbjct: 421 PKLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESA 464
Query: 295 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLL 354
+ S + S HEAGYDA++TG F ++LG F + A ++ + +N L
Sbjct: 465 EGFPSYDTASEQLHEAGYDAYITGLCFISMTNYLG-SFLSPPKNHVSARSKLIEPFINKL 523
Query: 355 YLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISK 414
+L ++++ N L +++H V+ FP K D+ + S
Sbjct: 524 FLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS- 567
Query: 415 VYGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I V +D+T+ FV S+ E V
Sbjct: 568 AFG---NIQVSWIDDTSAFVSLSQPEQV 592
>gi|332845320|ref|XP_003315023.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Pan
troglodytes]
gi|397525569|ref|XP_003832734.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Pan
paniscus]
Length = 593
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 69/445 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 67 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 123
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 124 PVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 162
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 163 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 216
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 217 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRL 276
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 277 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGF 320
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 321 PSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM 379
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 380 ----RVVDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG 423
Query: 418 PTSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 424 ---NIQISWIDDTSAFVSLSQPEQV 445
>gi|397525567|ref|XP_003832733.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Pan
paniscus]
Length = 578
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 69/445 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 52 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 108
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 109 PVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 147
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 148 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 201
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 202 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRL 261
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 262 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGF 305
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 306 PSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM 364
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 365 ----RVVDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG 408
Query: 418 PTSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 409 ---NIQISWIDDTSAFVSLSQPEQV 430
>gi|410217846|gb|JAA06142.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410256666|gb|JAA16300.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410287506|gb|JAA22353.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410350583|gb|JAA41895.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410350585|gb|JAA41896.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
Length = 639
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 69/445 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 169
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 170 PVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 208
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 209 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 262
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 263 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRL 322
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 323 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGF 366
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 367 PSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM 425
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 426 ----RVVDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG 469
Query: 418 PTSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 470 ---NIQISWIDDTSAFVSLSQPEQV 491
>gi|410917870|ref|XP_003972409.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like [Takifugu rubripes]
Length = 559
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 108/444 (24%), Positives = 175/444 (39%), Gaps = 68/444 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E E+ L+ T E S +
Sbjct: 113 IDFLASQGFDFNKVFCNGIPYLNQE-EEAQLRE--QTEERRS-----------QANGVGT 158
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
P + K G +E E N ++ E +F + L T
Sbjct: 159 PSYISPSSSK--------GPAHVPEEHKEF---INKVIEKVEALFSGTEKTLVLEPCTGF 207
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS- 179
Q LI + F ++ + + V E ++K + +QK++ E
Sbjct: 208 QRKLIYQTLNWKFPKGLHVETIETQKKERFIQVSRVDEEERKR-----RKQQKLEREQEE 262
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++GF VI+ +S KL+VGHN LD+ H +F+ PLP ++F FP ++
Sbjct: 263 LNDAVGFSRVINAISQSGKLVVGHNMLLDVMHTIYQFYCPLPEDLQDFKEVTMCVFPRLL 322
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEV-DDIR 298
DTK++ + ++ F + +L L P +VE +
Sbjct: 323 DTKLMAS----------------TQPFKEMISNTSLAELEKQLKESPFKPPQVETAEGFP 366
Query: 299 SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSW 358
S + HEAGYDA++TG F ++LG F + A ++ + N L+L
Sbjct: 367 SYDAAKEQLHEAGYDAYITGLCFISMTNYLG-SFLTPPKAYISARSKLIEPFFNKLFLM- 424
Query: 359 TNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGP 418
II++ N T L KR N V+ FP K D+ + S +G
Sbjct: 425 ---RIIDIPYLNITGPDLQP-KRDN----------VLYVTFPKEWKTSDLYQLFS-AFG- 468
Query: 419 TSVISVYHVDETAVFVQFSRAEMV 442
I V +D+T+ FV S+ + V
Sbjct: 469 --NIQVSWIDDTSAFVSLSQTDQV 490
>gi|397525565|ref|XP_003832732.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Pan
paniscus]
Length = 639
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 69/445 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 169
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 170 PVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 208
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 209 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 262
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 263 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRL 322
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 323 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGF 366
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 367 PSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM 425
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 426 ----RVVDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG 469
Query: 418 PTSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 470 ---NIQISWIDDTSAFVSLSQPEQV 491
>gi|332845316|ref|XP_510832.3| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Pan
troglodytes]
Length = 639
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 69/445 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 169
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 170 PVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 208
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 209 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 262
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 263 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRL 322
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 323 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGF 366
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 367 PSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM 425
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 426 ----RVVDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG 469
Query: 418 PTSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 470 ---NIQISWIDDTSAFVSLSQPEQV 491
>gi|198418498|ref|XP_002129059.1| PREDICTED: similar to poly(A)-specific ribonuclease [Ciona
intestinalis]
Length = 642
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 137/334 (41%), Gaps = 44/334 (13%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV---NSTYEDESLDSWHSLKEIRDTHL 57
+DFL FDFN I EG+ +L R E+ +++ Y + S + +
Sbjct: 111 LDFLTLQDFDFNKAIKEGIPFL-RPSEEASVRSAIEEKQAYRQSTYKSPAKFDGVGRSPS 169
Query: 58 FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGF 117
P ++ +E + ++N E +E DS+ E +R
Sbjct: 170 SKGPSTPITDQKTKDFTEKVVAKIKNFLENTE------DSEIVLEPCNSYLR-------- 215
Query: 118 TSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE 177
++L + K L R + V+V S S L KE + K+ E
Sbjct: 216 ---KILFENIPAAFPGKILVESRTDEQTHQRHIVVVRGASAS----LQKERNLQAKVKEE 268
Query: 178 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 237
+++ ++GF ++ LS +KLIVGHN LD+ + +F PLP EEF S V FP
Sbjct: 269 SNLEEAVGFSKIVKKLSQSQKLIVGHNMLLDVFYTIQQFVCPLPDVLEEFKSLVGCVFPK 328
Query: 238 IIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVD-- 295
++DTK++ S+L F L ALG + L P ++ V
Sbjct: 329 LLDTKLM---GSML-------------PFRDLLSTTALGDMNARLREPPFQPPDITVPGK 372
Query: 296 -DIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
++ S+ HEA YDA++TG F ++L
Sbjct: 373 YNVGSTKSQDSNLHEAAYDAYVTGSAFLSMVNYL 406
>gi|355756570|gb|EHH60178.1| Poly(A)-specific ribonuclease PARN, partial [Macaca fascicularis]
Length = 634
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 69/445 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 108 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 164
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 165 PVTIPEDQKKFVDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 203
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 204 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 257
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 258 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRL 317
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 318 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFSPPKVESAEGF 361
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 362 PSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM 420
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 421 ----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG 464
Query: 418 PTSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 465 ---NIQISWIDDTSAFVSLSQPEQV 486
>gi|197102834|ref|NP_001125357.1| poly(A)-specific ribonuclease PARN [Pongo abelii]
gi|60390294|sp|Q5RC51.1|PARN_PONAB RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease
gi|55727812|emb|CAH90659.1| hypothetical protein [Pongo abelii]
Length = 639
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 69/445 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 169
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 170 PVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 208
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 209 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 262
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 263 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRL 322
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 323 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFSPPKVESAEGF 366
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 367 PSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM 425
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 426 ----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG 469
Query: 418 PTSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 470 ---NIQISWIDDTSAFVSLSQPEQV 491
>gi|339715201|ref|NP_001229921.1| poly(A)-specific ribonuclease PARN isoform 3 [Homo sapiens]
gi|194377130|dbj|BAG63126.1| unnamed protein product [Homo sapiens]
Length = 593
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 69/445 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 67 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 123
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 124 PVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 162
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 163 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 216
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 217 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRL 276
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 277 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGF 320
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 321 PSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM 379
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 380 ----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG 423
Query: 418 PTSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 424 ---NIQISWIDDTSAFVSLSQPEQV 445
>gi|351701243|gb|EHB04162.1| Poly(A)-specific ribonuclease PARN, partial [Heterocephalus glaber]
Length = 617
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 104/459 (22%), Positives = 182/459 (39%), Gaps = 97/459 (21%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDK----------------ALKHVNSTYEDESLD 44
+DFLA FDFN +G+ YL++E+E + AL +V+ +
Sbjct: 109 IDFLASQGFDFNKVFCKGIPYLNQEEERQLREQYDEKRSQANGAGALAYVSPNTSKCPVT 168
Query: 45 SWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETI 104
K+ D + I D+L +E K E G R K ++T+
Sbjct: 169 IPEDQKKFIDQVVEKIEDLLQSEENKTLDLEPCTGFQR---------------KLIYQTL 213
Query: 105 FFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKML 164
+K + + + K Y+ +S N E E ++
Sbjct: 214 SWKYPRGVHIETLETE-------------KKERYVVISKVN----------EEERKRREQ 250
Query: 165 MKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 224
K K++++++ ++GF VI +++ KL+VGHN LD+ H +F+ PLP
Sbjct: 251 QKHAKEQEELND------AVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADL 304
Query: 225 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 284
+EF FP ++DTK++ + ++ F + +L L
Sbjct: 305 KEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKE 348
Query: 285 QPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAH 343
P +VE + S + S HEAGYDA++TG F +HLG F +
Sbjct: 349 TPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANHLG-SFLSPPKLHVSSR 407
Query: 344 NEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHL 403
++ + N L+L ++++ N L +++H V+ FP
Sbjct: 408 SKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEW 452
Query: 404 KAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
K+ D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 453 KSSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 487
>gi|224070057|ref|XP_002197536.1| PREDICTED: poly(A)-specific ribonuclease PARN [Taeniopygia guttata]
Length = 638
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 102/448 (22%), Positives = 183/448 (40%), Gaps = 75/448 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDE--SLDSWHSLKEIRDTHL- 57
+DFLA FDFN G+ YL++E+E + + Y+++ + SL I
Sbjct: 113 IDFLANQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRSQANGAGSLSYISPNSTK 168
Query: 58 --FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 115
IP+ ++ +++ E + LL+N + S
Sbjct: 169 CPVTIPED--QKKFVEKVVEQIEDLLKNEESESLE--------------------LEPCT 206
Query: 116 GFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 175
GF + L+ Q + K+ K + + + VI ++ E K+ ++ EQ+
Sbjct: 207 GF--QRKLIYQTLSWKYPKGIHVETLESDKKERYIVITKVDEEERKRREQQKQAKEQE-- 262
Query: 176 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
+ ++GF V+ +++ KL++GHN LD+ H +F+ PLP EF + F
Sbjct: 263 ---ELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQFYCPLPDDLSEFKEVTSCVF 319
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-V 294
P ++DTK++ + ++ F + +L L P +VE
Sbjct: 320 PRLLDTKLMAS----------------TQPFKEMINNTSLAELEKRLKEVPFSPPKVESA 363
Query: 295 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLL 354
+ S + S HEAGYDA++TG F + LG F + A ++ + N L
Sbjct: 364 EGFPSYDTASEQLHEAGYDAYITGLCFISMANFLG-SFLSPPKNHVSARSKLIEPFFNKL 422
Query: 355 YLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISK 414
+L ++++ N L +++H V+ FP K D+ + S
Sbjct: 423 FLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS- 466
Query: 415 VYGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I V +D+T+ FV S+ E V
Sbjct: 467 AFG---NIQVSWIDDTSAFVSLSQPEQV 491
>gi|417403544|gb|JAA48572.1| Putative polya-specific exoribonuclease parn [Desmodus rotundus]
Length = 638
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/447 (23%), Positives = 186/447 (41%), Gaps = 73/447 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS--WHSLKEIRDTHLF 58
+DFLA FDFN G+ YL++E+E + + Y+++ L S +L + +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRLQSNGAGALSYV-SPNTS 167
Query: 59 NIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 116
P + ++ K D++ E + LL++ + + + P G
Sbjct: 168 KCPVTVPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TG 207
Query: 117 FTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDA 176
F + L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 208 F--QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE--- 262
Query: 177 EMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP 236
+ ++GF VI +++ KL++GHN LD+ H +F PLP EF FP
Sbjct: 263 --ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFCCPLPEDLNEFKEMTTCVFP 320
Query: 237 HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VD 295
++DTK++ + ++ F + +L L P +VE +
Sbjct: 321 RLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAE 364
Query: 296 DIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLY 355
S + S HEAGYDA++TG F ++LG F A ++ + +N L+
Sbjct: 365 GFPSYDTASEQLHEAGYDAYITGLCFISMTNYLG-SFLSPPKIHVSARSKLIEPFINKLF 423
Query: 356 LSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKV 415
L ++++ N L +++H V+ FP K D+ + S
Sbjct: 424 LM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-A 467
Query: 416 YGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I + +D+T+ FV S+ E V
Sbjct: 468 FG---NIQISWIDDTSAFVSLSQPEQV 491
>gi|322801460|gb|EFZ22121.1| hypothetical protein SINV_07959 [Solenopsis invicta]
Length = 571
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 140/329 (42%), Gaps = 59/329 (17%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPD 62
FLA FDFN G+ YL E+K +K ++ LKE + + I D
Sbjct: 111 FLANQDFDFNKLFKHGIPYLCASDEEKLVKR---------MEEKQKLKEENNQDIIPISD 161
Query: 63 ILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQL 122
DR P + + E ++++
Sbjct: 162 -------NDR-------------------PQIEEICSRIENFLASDAKELTIDRCNGFMR 195
Query: 123 LLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE-MSIK 181
L+ R + D + EN+ Q ++V +++ E KD +K + E + +K
Sbjct: 196 RLVYQEARARWPDKVRIETKIENTW-QCLLVQRAGTKEEE----EGKDNEKREKEKLEVK 250
Query: 182 ASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDT 241
++G ++ + +K+IVGHN LD+ HI +FF PLP EF S ++ FP+++DT
Sbjct: 251 QAVGLSSLLKKIVESEKIIVGHNMLLDLCHIIHQFFTPLPSDYLEFKSLIHGLFPNLLDT 310
Query: 242 KILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKV-EVEVDDIRSS 300
K++ S+ Q + SS++L+ L +P + E+E + RS
Sbjct: 311 KVICQSH---QFKELVSSSNLNFLLETLS--------------KPPFSIPEIESVEGRSY 353
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLG 329
+ ++ HEAGYDA++TG F ++LG
Sbjct: 354 SVSTEKSHEAGYDAYITGLCFIAMSNYLG 382
>gi|197333695|ref|NP_001127949.1| poly(A)-specific ribonuclease PARN isoform 2 [Homo sapiens]
gi|194375568|dbj|BAG56729.1| unnamed protein product [Homo sapiens]
Length = 578
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 69/445 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 52 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 108
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 109 PVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 147
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 148 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 201
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 202 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRL 261
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 262 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGF 305
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 306 PSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM 364
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 365 ----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG 408
Query: 418 PTSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 409 ---NIQISWIDDTSAFVSLSQPEQV 430
>gi|4505611|ref|NP_002573.1| poly(A)-specific ribonuclease PARN isoform 1 [Homo sapiens]
gi|60390262|sp|O95453.1|PARN_HUMAN RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Deadenylating nuclease; AltName: Full=Deadenylation
nuclease; AltName: Full=Polyadenylate-specific
ribonuclease
gi|3776076|emb|CAA06683.1| poly(A)-specific ribonuclease [Homo sapiens]
gi|29477165|gb|AAH50029.1| PARN protein [Homo sapiens]
gi|119605516|gb|EAW85110.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_a [Homo sapiens]
gi|189054660|dbj|BAG37510.1| unnamed protein product [Homo sapiens]
gi|325463607|gb|ADZ15574.1| poly(A)-specific ribonuclease (deadenylation nuclease) [synthetic
construct]
Length = 639
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 69/445 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 169
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 170 PVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 208
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 209 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 262
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 263 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRL 322
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 323 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGF 366
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 367 PSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM 425
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 426 ----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG 469
Query: 418 PTSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 470 ---NIQISWIDDTSAFVSLSQPEQV 491
>gi|119605517|gb|EAW85111.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_b [Homo sapiens]
Length = 640
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 69/445 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 114 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 170
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 171 PVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 209
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 210 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 263
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 264 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRL 323
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 324 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGF 367
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 368 PSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM 426
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 427 ----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG 470
Query: 418 PTSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 471 ---NIQISWIDDTSAFVSLSQPEQV 492
>gi|328776032|ref|XP_392167.3| PREDICTED: poly(A)-specific ribonuclease PARN-like [Apis mellifera]
Length = 897
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 109/453 (24%), Positives = 186/453 (41%), Gaps = 90/453 (19%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FLA FDFN G+ YL+ +E+K +K
Sbjct: 109 ISFLASQGFDFNKLFKLGIPYLTTNEEEKLMK---------------------------- 140
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
RL E R RDEG+E+ P + + Q E I ++ ++ +
Sbjct: 141 -----------RLEEKQ----RIRDEGTEILPISDVERPQIEEICSRIDEFVTSE---TE 182
Query: 121 QLLL------IQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKI 174
+LL+ I+ +V + K ++ E+ + + + K ++ + E++
Sbjct: 183 ELLIEKCNAFIRRLVYQEVKLRWPNKLKVESKMNNFGCILVVQRLGTKEEEEQREIEKRE 242
Query: 175 DAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKY 234
+ I+ ++G ++ ++ KLIVGHN LD+ HI +FFG LP + EF S V+
Sbjct: 243 REKTEIQQAVGLSILMRKIADSGKLIVGHNMLLDLCHIVHQFFGQLPESYFEFKSLVHSL 302
Query: 235 FPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEV 294
FP I+DTKI+ + S+ F P LG ++ P EVE
Sbjct: 303 FPRILDTKIICH----------------SQQFKENIPSSNLGILLETVSKSPFKITEVEP 346
Query: 295 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVN-L 353
D RS + S HEAGYDA++TG F ++LG ++ L+ + L +N L
Sbjct: 347 IDGRSYSTLSEKCHEAGYDAYITGICFIALSNYLG-SLQKPEVPIVLSDSPLLNPFLNKL 405
Query: 354 LYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECIS 413
L + INL + N ++H V FP K W + IS
Sbjct: 406 LIARLKDVPYINLVGDD-------PNPSRDH---------VFHLTFP---KEWKFND-IS 445
Query: 414 KVYGPTSVISVYHVDETAVFVQFSRAEMVSKFL 446
++ P + V + + + +++ R + V++ +
Sbjct: 446 HLFSPFGSVHVSWLSDISAYIELHRRDQVNEVM 478
>gi|432956699|ref|XP_004085743.1| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial
[Oryzias latipes]
Length = 542
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 123/279 (44%), Gaps = 38/279 (13%)
Query: 166 KEVKDEQKIDAEMS-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 224
++ +++QK++ E + ++GF VI +S KL+VGHN LD+ H +F+ LP
Sbjct: 121 RKRREQQKLEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFYCSLPEDL 180
Query: 225 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 284
++F FP ++DTK++ + ++ F L +L +
Sbjct: 181 QDFKEVTMCVFPRLLDTKLMAS----------------TQPFKELINNTSLAELEKQVKE 224
Query: 285 QPSVKVEVEV-DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAH 343
P VE + S + HEAGYDAF+TG F +HLG F + AH
Sbjct: 225 SPFKAPAVETAEGFPSYDTAQEQLHEAGYDAFITGLCFISMANHLG-SFLTPPKAHISAH 283
Query: 344 NEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHL 403
++ + N L+L II++ N T L +++H V+ FP
Sbjct: 284 SKLIEPFFNKLFLM----RIIDIPYLNITGPDL--QPKRDH---------VLYVTFPKEW 328
Query: 404 KAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
K D+ + S +G I V +DET+ FV S+ + V
Sbjct: 329 KTSDLYQLFS-AFG---NIQVSWIDETSAFVCLSQTDQV 363
>gi|145495491|ref|XP_001433738.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400858|emb|CAK66341.1| unnamed protein product [Paramecium tetraurelia]
Length = 526
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 84/159 (52%), Gaps = 19/159 (11%)
Query: 185 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 244
G R ++D +S +K I+ HN +DI HIY KFF LP + EFIS VN FP I DTK L
Sbjct: 254 GVRILLDQISQQKTPIILHNGLMDIMHIYDKFFETLPDSRGEFISKVNSLFPVIYDTKFL 313
Query: 245 LNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQ---PSVKVEVEVDDIRSSN 301
+N + + ++ + FS L K++++ LQ P+V E + +
Sbjct: 314 INQSYSVYNKVGQ--------FSEL--------KNSYINLQNLEPNVVFGDECQEYNNLE 357
Query: 302 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSEN 340
N +HEAG+D++M G VF +A + +D K+ +N
Sbjct: 358 ENQAFEHEAGFDSYMAGSVFYKAKKLMNLDQKKLDLYQN 396
>gi|355709980|gb|EHH31444.1| Poly(A)-specific ribonuclease PARN, partial [Macaca mulatta]
Length = 634
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 69/445 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 108 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 164
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 165 PVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 203
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 204 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 257
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 258 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRL 317
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 318 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKEIPFSPPKVESAEGF 361
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 362 PSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM 420
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 421 ----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG 464
Query: 418 PTSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 465 ---NIQISWIDDTSAFVSLSQPEQV 486
>gi|307174505|gb|EFN64967.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Camponotus floridanus]
Length = 509
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 105/430 (24%), Positives = 193/430 (44%), Gaps = 78/430 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FL Y+FDFN + G+SYL+ ++D+A+ +++ + LF+
Sbjct: 109 LEFLTAYEFDFNKFAYNGISYLN--EDDQAILQ----------------QQLEENVLFHN 150
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + R +D L +++ + + S+ ET K+ + + +H
Sbjct: 151 VERSMSYREEDSLKDYINQVFEWLNTASD------------ETNSLKIDTPTPILQYLTH 198
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+ L R F ++ SG N++ ++ D + ++++ +E I + +
Sbjct: 199 KEL------RNRFPNV--WTFSG-----NNMVTVMKIRPDSRAILEQ--EEGSILENVLL 243
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
++ IGF V LL + KK IV HN LD+ +Y +F+ PLP F S+++ FP I D
Sbjct: 244 ESYIGFSKVFKLLVTLKKPIVAHNALLDLMFMYQQFYKPLPKKYTNFKDSLHQLFPTIYD 303
Query: 241 TKIL---LNSNSILQQRMKKSSTS-LSKAFSVLCPQ-IALGSKSTHLALQPSVKVEVEVD 295
TK L L + +Q+ K +S S L + F+ + +ALGS P++ + +++
Sbjct: 304 TKFLSFELREHLSTEQKWKFNSLSGLVEYFTEKQGKYLALGS--------PNINLTCKIN 355
Query: 296 DIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGID-FKQQSSSENLAHNEKLREHVNLL 354
+S+ S H AG+D++ G VF + + Q S+ ++ H E L +V
Sbjct: 356 SDKSNVVPSTKYHTAGWDSYFAGYVFIRLIHVFSAKCYGQSSTLKHFTHTE-LMNNVK-- 412
Query: 355 YLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFP----------SHLK 404
S+ N IN+ G+ + L + + PK LF + + P S
Sbjct: 413 --SFAN--CINIIRGSTSHLKLDGPEPGSTRPKWLF--VKTLASKPITAMQIAEKMSSFG 466
Query: 405 AWDIRECISK 414
A DI++C SK
Sbjct: 467 AVDIKQCTSK 476
>gi|380813232|gb|AFE78490.1| poly(A)-specific ribonuclease PARN isoform 1 [Macaca mulatta]
gi|383411569|gb|AFH28998.1| poly(A)-specific ribonuclease PARN isoform 1 [Macaca mulatta]
gi|384943224|gb|AFI35217.1| poly(A)-specific ribonuclease PARN isoform 1 [Macaca mulatta]
Length = 639
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 69/445 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 169
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 170 PVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 208
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 209 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 262
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 263 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRL 322
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 323 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKEIPFSPPKVESAEGF 366
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 367 PSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM 425
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 426 ----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG 469
Query: 418 PTSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 470 ---NIQISWIDDTSAFVSLSQPEQV 491
>gi|118362492|ref|XP_001014473.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila]
gi|89296240|gb|EAR94228.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila SB210]
Length = 419
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 148/340 (43%), Gaps = 85/340 (25%)
Query: 10 DFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERM 69
DFN GV Y SR+QE E DS+ SL+ +R
Sbjct: 2 DFNEVFKNGVYYFSRQQE-------------EQFDSFKSLQGVR---------------- 32
Query: 70 KDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQF-ETIFFKMRPAISLNGFTSHQLLLIQLV 128
ND +QQ ++ F + +SLN TSH + +
Sbjct: 33 -------------------------NDIRQQIIQSQSFHFKEFMSLNEKTSHGAKICNFL 67
Query: 129 -----VRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKAS 183
V+KH++ +++ + +N I ++ + K + Q E I +
Sbjct: 68 QRIGTVQKHYQRR---KINIQKITEKNDI----DDTQNQNSAKNTQQSQYSFEEYEI-MN 119
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
FR +ID + + K I+ HN F+DI H+Y KF LP ++EF +NK+FP I D+K+
Sbjct: 120 YNFRSIIDEIINLKIPIIVHNGFIDILHLYDKFLYNLPEGSQEFKKEINKHFPVIFDSKL 179
Query: 244 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSK---STHLALQPSVKVEVEVDDIRS- 299
++NS+ L Q + S L + + + S+ ST + +P K ++D+I+
Sbjct: 180 IINSSQKLSQEVNFQS-DLRNCYEKMLKYKDIDSQIFISTDIN-EPQEK--EDIDNIQQN 235
Query: 300 ---SNWN-SGVK-----HEAGYDAFMTGCVFAQACSHLGI 330
SN+ +G+K HEAGYDA MTG +F ++ L I
Sbjct: 236 TLFSNYQINGLKENNKMHEAGYDAMMTGYIFFKSLQILNI 275
>gi|327287978|ref|XP_003228705.1| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial [Anolis
carolinensis]
Length = 593
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 106/448 (23%), Positives = 179/448 (39%), Gaps = 74/448 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSL--KEIRDTHLF 58
+DFLA FDFN G+ YL++E+E + + S +
Sbjct: 113 IDFLANQGFDFNKVFRNGIPYLNQEEERQLQEQYEEKRSQAGRVGSLSFASPNAQSKCPV 172
Query: 59 NIPD--ILFAERMKDRLSEWLGGLLRNRDEGS-EVQPSFNDSKQQFETIFFKMRPAISLN 115
IP+ F +++ DR+ LL+N + S E++P
Sbjct: 173 TIPEDQKTFIDKVVDRVDT----LLQNEESASLELEP---------------------CT 207
Query: 116 GFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 175
GF + L+ Q + K+ K + + E ++ ++ E K+ + EQ+
Sbjct: 208 GF--QRKLIYQTLSWKYPKGIHVETLETEKKERYIIVSKVDEEERKRREQQRQAKEQE-- 263
Query: 176 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
+K ++GF VI +++ KL+VGHN LD+ H +F+ PLP EF F
Sbjct: 264 ---ELKDAVGFSRVIHAMANSGKLVVGHNMLLDVMHTIHQFYCPLPEDLGEFKELTTCVF 320
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEV- 294
P ++DTK++ + ++ F L +L + P VE
Sbjct: 321 PRLLDTKLM----------------ATTQPFKDLISNTSLAELEKRVKETPFSPPNVETA 364
Query: 295 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLL 354
+ S + S HEAGYDA++TG F ++LG F S ++ + N L
Sbjct: 365 EGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKSHVSTRSKLIEPFFNKL 423
Query: 355 YLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISK 414
+L ++++ N L +++H V+ FP K D+ S
Sbjct: 424 FLM----RVMDIPYLNLEGPDL--QPKRDH---------VLYVTFPKEWKTSDLYRLFS- 467
Query: 415 VYGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I V +D+T+ FV S+AE V
Sbjct: 468 AFG---NIQVSWIDDTSAFVSLSQAEQV 492
>gi|380022861|ref|XP_003695254.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1-like [Apis florea]
Length = 633
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 156/345 (45%), Gaps = 93/345 (26%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHL-FN 59
++FL K+ F+FN ++EG+S+L E ++K LK+ I+ L +N
Sbjct: 110 LEFLCKHNFEFNKFLNEGISFLD-ETDEKLLKNY-----------------IKGGSLAYN 151
Query: 60 IPDILFAER-----MKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISL 114
+ + + E K ++SEW+ N S+Q +L
Sbjct: 152 LNHLTYEEENEFIDYKTKISEWIAN---------------NKSEQ-------------TL 183
Query: 115 NGFTSHQLL--LIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQ 172
N TS+ +L LI +R ++K++ +S S I +E D L+K+ DE+
Sbjct: 184 NIQTSNPILQYLIHKDIRYNYKNI--WSISDHKS-----IGIVEISPDMHELLKK-NDEE 235
Query: 173 KIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVN 232
++ E+ + IGF V LLSS KK+I+GHN LD+ ++ +F+ PLP + EF ++++
Sbjct: 236 NLEKEL-LDYYIGFSKVFKLLSSSKKIIIGHNILLDLMFMHQQFYKPLPNSYNEFKNNIH 294
Query: 233 KYFPHIIDTKIL------LNSNSILQQRMKKSS------TSLSKAFSVLCPQIALGSKST 280
+ FP I DTK L L S + ++ S T+ K ++ P+I + +S+
Sbjct: 295 ELFPQIYDTKFLSYEVRKLFSKEEVSWKISSLSTLYEYFTTKGKLLTLNSPKIVINEESS 354
Query: 281 HLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQAC 325
++ L + H AG+DA+ G ++ +
Sbjct: 355 NIIL------------------DEKKYHTAGWDAYFAGYIYIKMA 381
>gi|348669379|gb|EGZ09202.1| hypothetical protein PHYSODRAFT_525456 [Phytophthora sojae]
Length = 465
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 140/337 (41%), Gaps = 52/337 (15%)
Query: 168 VKDEQKIDAEMSIK--ASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAE 225
+ D+Q D EM + + IGF V+D + + +K IVGHN LD+ Y KF GPLP
Sbjct: 85 LADQQLADDEMRERNLSLIGFTAVLDAIVAARKPIVGHNMLLDLMQCYEKFHGPLPARCA 144
Query: 226 EFISSVNKYF---PHIIDTKILLNSNSILQQRMKK-----SSTSLSKAFSVLCPQIALGS 277
EF ++ + + DTK L++ Q++ + T+L F VL G
Sbjct: 145 EFQRELHAWLGAGGGVFDTKTLVD---YAMQKVDSFATHLAHTALENCFEVLSKHPFYGP 201
Query: 278 KSTHLALQPSVKVEVEVDDIR-------SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 330
+ + QPSV+ VD R S+ H+AGYDAFMTG VF + CS LG+
Sbjct: 202 EVQ--SAQPSVR---GVDAAREYGAELMGSSQAPLQAHQAGYDAFMTGFVFLRVCSGLGV 256
Query: 331 DFK---------QQSSSENLAHNEKLREHVNLLYLS-WTNGEIINLSTGNRTSESLASNK 380
+ Q+ S++ + L N+L++S + +++L S
Sbjct: 257 SNESIASLGRSSQRPESKSKRADNALESLRNVLFVSHFLPTYVLDLPGPFPQPTPTPSRS 316
Query: 381 RKNHYPKILFECIVIVWGFP----------SHLKAWDIRECIS---KVYGPTSVISVYHV 427
R V P LK + I+ C+ + T +++V+
Sbjct: 317 RFVRMKLTRTRAPVAAGATPLPNGAGNNSCPALKTFHIKHCVGWALNLQSATRLVNVHWE 376
Query: 428 DETAVFVQFSRAEMVSKFLDLKGSLDR----NNDPIS 460
+ V+V+ AE + L ++ NDP+
Sbjct: 377 GQQCVYVELPSAEAAEQLLAVRAQTKECWGSANDPMP 413
>gi|393716306|ref|NP_001257344.1| poly(A)-specific ribonuclease PARN [Rattus norvegicus]
gi|306415570|gb|ADM86746.1| poly(A)-specific ribonuclease [Rattus norvegicus]
Length = 624
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 102/444 (22%), Positives = 183/444 (41%), Gaps = 74/444 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + DE + + + I
Sbjct: 113 IDFLASQGFDFNKVFCSGIPYLNQEEERQLREQF-----DEKRSQANGAGALTKCPV-TI 166
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
P+ ++ D++ E + G L+ ++ + + LN T
Sbjct: 167 PED--QKKFIDQVIEKIEGFLQREEKRT-----------------------LELNPCTGF 201
Query: 121 QLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q LI Q + K+ K + + + VI ++ E K+ ++ EQ+
Sbjct: 202 QRKLIYQTLSWKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYAKEQE-----E 256
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++GF VI +++ KL+VGHN LD+ H +F+ PLP+ EF FP ++
Sbjct: 257 LNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPVDLNEFKEMTTCVFPRLL 316
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIR 298
DTK++ + ++ F + +L L P +VE +
Sbjct: 317 DTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFP 360
Query: 299 SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSW 358
S + S HEAGYDA++TG F ++LG + + A ++ + N L+L
Sbjct: 361 SYDTASEQLHEAGYDAYITGLCFISMANYLGSLLSPPKTCVS-ARSKLIEPFFNKLFLM- 418
Query: 359 TNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGP 418
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 419 ---RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG- 462
Query: 419 TSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 463 --NIQISWIDDTSAFVSLSQPEQV 484
>gi|194227480|ref|XP_001491677.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Equus caballus]
Length = 627
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 143/329 (43%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y FD+N + G+ Y++ EQE K +KH N + S+ S
Sbjct: 208 VQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKH-NILTGNWSVHS--------------S 251
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
PD + + D ++ WL D +E ++L G
Sbjct: 252 PDKDQIKVVIDEVTRWL-------DLAAEGD-------------------WMTLPGIAGF 285
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ D+ LR Q V+V S+ + L D + E
Sbjct: 286 QAFEVQLVLRQALPDIWTVLR-------DQGVVVKKVSKQHRWYLENTSGDRESCWKEKI 338
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + E+F +V+ FP +I
Sbjct: 339 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYEQFKLNVHNLFPVLI 398
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + S + + S K E V+
Sbjct: 399 DTKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLNPSKNSGPVIIHAS-KCEKYVE---- 451
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 452 ----TKYPHEAAYDAFLCGSVLLKV-AHL 475
>gi|47218930|emb|CAF98128.1| unnamed protein product [Tetraodon nigroviridis]
Length = 614
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 135/333 (40%), Gaps = 51/333 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + +E R+ H +
Sbjct: 108 IDFLASQGFDFNKVFCNGIPYLNQEEEAQLREQT---------------EERRNQHANGV 152
Query: 61 --PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + K G DE + N ++ E +F ++ L T
Sbjct: 153 GTPSYISPSSSK--------GPAHVPDEHKDF---INKVIERVEALFGSSEKSLDLEPCT 201
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
Q LI + F ++ + + V E ++K +++QK++ E
Sbjct: 202 GFQRKLIYQTLNWKFPKGLHVETIETQKKERFIQVSKVDEEERKK-----REQQKLEREQ 256
Query: 179 S-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 237
+ ++GF VI +S KL+VGHN LD+ H +F+ PLP +EF FP
Sbjct: 257 EELNDAVGFSRVIHAISQSGKLVVGHNMLLDVMHTIHQFYCPLPEELQEFKEVTMCVFPR 316
Query: 238 IIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEV-DD 296
++DTK++ + ++ F L +L L +P +VE +
Sbjct: 317 LLDTKLMAS----------------TQPFKELISNTSLAELEKQLKEKPFKPPQVETAEG 360
Query: 297 IRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 329
S + HEAGYDA++TG F ++LG
Sbjct: 361 FPSYDAAKEQLHEAGYDAYITGLCFISMTNYLG 393
>gi|354468609|ref|XP_003496745.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Cricetulus
griseus]
Length = 625
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/443 (23%), Positives = 183/443 (41%), Gaps = 72/443 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E +H+ + DE + + + I
Sbjct: 113 IDFLASQGFDFNKVFCSGIPYLNQEEE----RHLREQF-DEKRSQANGAGALAKCPV-TI 166
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
P+ + D++ E + L+N+++ S + P GF
Sbjct: 167 PED--QRKFIDQVIEKIENFLQNKEKKS-----------------LDLEPC---TGF--Q 202
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+ L+ Q + K K + + E VI ++ E K+ ++ EQ+ +
Sbjct: 203 RKLIYQTLSWKFPKGIHVETLETEKKERHIVISKVDEEERKRREQEKYAKEQE-----EL 257
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
++GF VI +++ +KL+VGHN LD+ H +F+ PLP EF FP ++D
Sbjct: 258 NDAVGFSRVIHAIANSRKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMTICVFPRLLD 317
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRS 299
TK++ + ++ F + +L L P +VE + S
Sbjct: 318 TKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPS 361
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT 359
+ S HEAGYDA++TG F ++LG + A ++ + N L+L
Sbjct: 362 YDTASEQLHEAGYDAYITGLCFISMANYLGSLLGPPKVCVS-ARSKLIEPFFNKLFLM-- 418
Query: 360 NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPT 419
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 419 --RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG-- 462
Query: 420 SVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 463 -NIQISWIDDTSAFVSLSQPEQV 484
>gi|398404580|ref|XP_003853756.1| hypothetical protein MYCGRDRAFT_91566 [Zymoseptoria tritici IPO323]
gi|339473639|gb|EGP88732.1| hypothetical protein MYCGRDRAFT_91566 [Zymoseptoria tritici IPO323]
Length = 677
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 95/403 (23%), Positives = 154/403 (38%), Gaps = 102/403 (25%)
Query: 2 DFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIP 61
+FL K FD GV YLSR E K + D + ++K +
Sbjct: 159 EFLLKVGFDMGRPFTHGVPYLSR-AESKTAREKFVKRNDRGAVADIAIKPT------EVE 211
Query: 62 DILFAERMKDRLSEWLGGLLRNRDEGSEVQP----SFNDSKQQFETIFFKMRPAISLNGF 117
+ F R++ ++ EW+ E + P + ++ ++Q E F+ R
Sbjct: 212 SLAFLARVRSQVDEWVASTSMKTPEYLNIVPFDSDNVSNEQKQEELSRFEKR-------- 263
Query: 118 TSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE 177
L+ +VR + +L + G VI + + D+ + + +K D E
Sbjct: 264 ------LVHQIVRAEYPELTTISRRG----MIQVIKFDQEREDR------IAEGRKRDLE 307
Query: 178 MSIKASIGFRHVID-----------------------------------------LLSSE 196
I GFR +ID LL +
Sbjct: 308 ERIARQKGFRWIIDAMHGGNITSLDLRECARDSVTGEYIFVNMDDMKGQFHRAQALLRNN 367
Query: 197 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMK 256
K++VGHNCFLD+ +IY F G LP T EEF ++K +P I+DTK + N
Sbjct: 368 PKVLVGHNCFLDLVYIYRTFIGTLPDTVEEFQRKLHKLWPVIVDTKYMSTHN-------- 419
Query: 257 KSSTSLSKAFSVLCPQIALGSKSTHLALQPSV--KVEVEVDDIRSSNWNSGVKHEAGYDA 314
C I+ S +A Q S VEVD S + HEAGYD+
Sbjct: 420 -------------CGDISPASSLEQIAEQLSAFQTPGVEVDPQHSKYTDLAAFHEAGYDS 466
Query: 315 FMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
F+T V + + L ++ + ++ AH +L++ + + L+
Sbjct: 467 FLTAQVAVRLSAKLE---REGAYVDDDAHGAELKDGMAAVKLT 506
>gi|354468613|ref|XP_003496747.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Cricetulus
griseus]
Length = 590
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/443 (23%), Positives = 183/443 (41%), Gaps = 72/443 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E +H+ + DE + + + I
Sbjct: 70 IDFLASQGFDFNKVFCSGIPYLNQEEE----RHLREQF-DEKRSQANGAGALAKCPV-TI 123
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
P+ + D++ E + L+N+++ S + P GF
Sbjct: 124 PED--QRKFIDQVIEKIENFLQNKEKKS-----------------LDLEPC---TGF--Q 159
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+ L+ Q + K K + + E VI ++ E K+ ++ EQ+ +
Sbjct: 160 RKLIYQTLSWKFPKGIHVETLETEKKERHIVISKVDEEERKRREQEKYAKEQE-----EL 214
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
++GF VI +++ +KL+VGHN LD+ H +F+ PLP EF FP ++D
Sbjct: 215 NDAVGFSRVIHAIANSRKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMTICVFPRLLD 274
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRS 299
TK++ + ++ F + +L L P +VE + S
Sbjct: 275 TKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPS 318
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT 359
+ S HEAGYDA++TG F ++LG + A ++ + N L+L
Sbjct: 319 YDTASEQLHEAGYDAYITGLCFISMANYLGSLLGPPKVCVS-ARSKLIEPFFNKLFLM-- 375
Query: 360 NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPT 419
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 376 --RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG-- 419
Query: 420 SVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 420 -NIQISWIDDTSAFVSLSQPEQV 441
>gi|301108964|ref|XP_002903563.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262097287|gb|EEY55339.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 456
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 168 VKDEQKIDAEMSIK--ASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAE 225
+ DEQ D E+ + + IGF V+D++ + +K IVGHN LD+ Y KF GPLP
Sbjct: 85 LADEQLADDEIRERNLSLIGFTAVLDVIVAARKPIVGHNMLLDLMQCYEKFHGPLPGRCS 144
Query: 226 EFISSVNKYF---PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHL 282
EF ++ + + DTK L++ Q++ +T L+ C ++ S H
Sbjct: 145 EFQRELHTWLGAGGGVFDTKTLVD---YAMQKVDSFATHLAHTALENCYEVL----SKHP 197
Query: 283 ALQPSVKVEVEVDDIRSSNWNSGVK----HEAGYDAFMTGCVFAQACSHLGI 330
P V+ VD R + H+AGYDAFMTG VF + CS LG+
Sbjct: 198 FYGPEVQCVRSVDTARDEQVGASQPPLQAHQAGYDAFMTGFVFLRVCSGLGV 249
>gi|354468611|ref|XP_003496746.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Cricetulus
griseus]
Length = 633
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/443 (23%), Positives = 183/443 (41%), Gaps = 72/443 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E +H+ + DE + + + I
Sbjct: 113 IDFLASQGFDFNKVFCSGIPYLNQEEE----RHLREQF-DEKRSQANGAGALAKCPV-TI 166
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
P+ + D++ E + L+N+++ S + P GF
Sbjct: 167 PED--QRKFIDQVIEKIENFLQNKEKKS-----------------LDLEPC---TGF--Q 202
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+ L+ Q + K K + + E VI ++ E K+ ++ EQ+ +
Sbjct: 203 RKLIYQTLSWKFPKGIHVETLETEKKERHIVISKVDEEERKRREQEKYAKEQE-----EL 257
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
++GF VI +++ +KL+VGHN LD+ H +F+ PLP EF FP ++D
Sbjct: 258 NDAVGFSRVIHAIANSRKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMTICVFPRLLD 317
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRS 299
TK++ + ++ F + +L L P +VE + S
Sbjct: 318 TKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPS 361
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT 359
+ S HEAGYDA++TG F ++LG + A ++ + N L+L
Sbjct: 362 YDTASEQLHEAGYDAYITGLCFISMANYLGSLLGPPKVCVS-ARSKLIEPFFNKLFLM-- 418
Query: 360 NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPT 419
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 419 --RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG-- 462
Query: 420 SVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 463 -NIQISWIDDTSAFVSLSQPEQV 484
>gi|403332061|gb|EJY65020.1| Poly A-specific ribonuclease PARN, putative [Oxytricha trifallax]
Length = 560
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 11/147 (7%)
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
+GF +I LL +K I+ HN +D+ +Y KF GPLP ++F + +N P I DTK
Sbjct: 148 LGFSRIIKLLGDLQKPIISHNGVMDMMFLYEKFIGPLPENVDDFKAKLNGLLPQIFDTKH 207
Query: 244 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 303
++NS LQ +K +SLS + +C + + K+++ ++ + +
Sbjct: 208 MINSRQYLQ--LKFPESSLSTVYQSIC--------NPEQGWEYDQKIKLN-ENFKGYSLT 256
Query: 304 SGVKHEAGYDAFMTGCVFAQACSHLGI 330
V H+AG+DA MTG +F + + L
Sbjct: 257 GDVYHDAGFDALMTGILFCKFMTKLNF 283
>gi|357629823|gb|EHJ78364.1| putative poly [Danaus plexippus]
Length = 616
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 121/278 (43%), Gaps = 40/278 (14%)
Query: 169 KDEQKIDAEM-SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEF 227
+D QK + E + ++GF V ++S KL++GHN LD+ H + FF PLP F
Sbjct: 236 RDVQKKNEEWEQFEDAVGFSRVARMISQSGKLVIGHNMLLDVMHTLNHFFQPLPTDYNTF 295
Query: 228 ISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPS 287
+ FP I+DTK + +S+ K S+ L+ + + + S AL
Sbjct: 296 KEFTHCMFPRILDTKYM---SSLPPMSDKVDSSVLTHLLATM----SEAPFSVPKALCKP 348
Query: 288 VKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKL 347
+ DD +HEAGYDA++TG F +HL Q +
Sbjct: 349 GRGYTLADD---------KQHEAGYDAYITGVCFLAMINHLVRMRGDQPARLPPLEAAIW 399
Query: 348 REHVNLLYLSWT---NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLK 404
+ +N LYL+ T + INL+ + T ++H V FP K
Sbjct: 400 KPFMNKLYLAKTAHQDSPYINLTGPDPTPT-------RDH---------VFHVTFP---K 440
Query: 405 AWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
W R IS+++ P I+V +++T F+ FSR ++
Sbjct: 441 EWK-RSDISQLFSPFGQITVQFLNDTTAFIAFSRRDLA 477
>gi|383864733|ref|XP_003707832.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Megachile
rotundata]
Length = 577
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 109/451 (24%), Positives = 184/451 (40%), Gaps = 92/451 (20%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FLA FDFN G+ YL+ +E+K K L+ LKE
Sbjct: 109 LSFLANQGFDFNKLFKLGIPYLTMTEEEKLTKR---------LEKRQKLKE--------- 150
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRP-------AIS 113
E E+ P +D K Q E I +++ ++
Sbjct: 151 -------------------------ETPELVPITDDDKPQIEDICSRIQEFTESETEELT 185
Query: 114 LNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQK 173
+ ++ L+ VR + + ++ EN + K +E + ++K
Sbjct: 186 IEKCNAYMRRLVHQEVRIRWPN----KLKVENRLENFGCTLVVQRLGTKEEEEEKEIKRK 241
Query: 174 IDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNK 233
++ I+ ++G ++ ++ KLIVGHN LD+ HI +FFG LP EF + V+
Sbjct: 242 EKEKLEIQQAVGLSMLMRKIADSGKLIVGHNMLLDLCHIVHQFFGQLPENYLEFKALVHS 301
Query: 234 YFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE 293
FP ++DTKI+ +S Q R S++L+ + SKS P EVE
Sbjct: 302 LFPKVLDTKIICHSQ---QFRECVPSSNLNILLETI-------SKS------PFKVPEVE 345
Query: 294 VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNL 353
D R + + HEAGYDA++TG F ++LG + S L+ + L +N
Sbjct: 346 SIDGRGYSMLAEKCHEAGYDAYITGICFIALSNYLG-SLQTPEISVVLSDSPLLEPFLNK 404
Query: 354 LYLS-WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECI 412
L ++ + INL+ + N ++H V FP K W + + I
Sbjct: 405 LVIARLKDIPYINLTGDD-------PNPSRDH---------VFHLTFP---KEWKLND-I 444
Query: 413 SKVYGPTSVISVYHVDETAVFVQFSRAEMVS 443
+++ P + V + +T +V +R E V+
Sbjct: 445 CQLFSPFGGVHVSWLSDTTAYVGLNRREQVN 475
>gi|157118661|ref|XP_001659202.1| poly(a)-specific ribonuclease (deadenylation nuclease) [Aedes
aegypti]
gi|108883264|gb|EAT47489.1| AAEL001426-PA [Aedes aegypti]
Length = 582
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 157/364 (43%), Gaps = 63/364 (17%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFN- 59
M FLA+ FDFN EG+SY ED+ + + + +E + N
Sbjct: 104 MRFLAENGFDFNKLFREGLSYCGEADEDRLRTELKERQDQRAAALEAKEEENGNNDSLNM 163
Query: 60 IPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS 119
+P E++ +SE + L++ D+ + + NGF
Sbjct: 164 VPVPPEEEKLMKEISERIEEFLKSEDKDYTI---------------------TNCNGF-- 200
Query: 120 HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE-M 178
+ L+ Q++ + K ++ V+ EN+ + ++V E + + +E+++ E
Sbjct: 201 QRKLVYQMIDSQFRKTVSTSSVTLENN-HKAILV----ERKRTKEQELKLEEERVAQENE 255
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
++ +G V+ LS +KLI+GHN LD+ I +FF PLP +EF V + FP I
Sbjct: 256 DLERMVGLSLVLQELSRARKLIIGHNMLLDLLFIIRQFFRPLPHCYQEFKKIVRELFPLI 315
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVL------CPQIALGSKSTHLALQPSVKVEV 292
+DTK L + + ++ S+ L F + P++ G + +
Sbjct: 316 LDTKYLCTNGEL---KVHVYSSVLGHVFEAVNKAPFNIPEVTCGFEEHKYS--------- 363
Query: 293 EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVN 352
DD++ +H+AGYDA++TG F S +D K +L + L+ ++N
Sbjct: 364 -PDDMK--------QHDAGYDAYLTGLCFLGLASFFKVDLK------DLTRDPILKAYIN 408
Query: 353 LLYL 356
++L
Sbjct: 409 RIFL 412
>gi|452984862|gb|EME84619.1| hypothetical protein MYCFIDRAFT_152853 [Pseudocercospora fijiensis
CIRAD86]
Length = 574
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/373 (24%), Positives = 145/373 (38%), Gaps = 101/373 (27%)
Query: 2 DFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIP 61
+FL FD N +GV YLSR + +A +YE + E++ T
Sbjct: 112 EFLMGVGFDMNKPFRDGVPYLSRSEARQA----RESYEKRQKRGNIADIEVKPTE---TE 164
Query: 62 DILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAIS---LNGFT 118
+ F +R++ + W+ DSK + + PA S +NG +
Sbjct: 165 TLAFMDRVRKEVQAWV------------------DSKNVATHDYLNIAPAGSDVLVNGES 206
Query: 119 SHQL-----LLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQK 173
S ++ L+ +VR F +L G + Q IV + E + ++ + E+K
Sbjct: 207 SAEMPRLEKRLVHQLVRAEFPELVTF---GRRNFVQ--IVKFDKEREDRIAV-----ERK 256
Query: 174 IDAEMSIKASIGFRHVID-------------------------------------LLSSE 196
E + GFR +I+ LL
Sbjct: 257 ERFEAQLNRQKGFRWIIEAMHGSNIANLDLMECAKDAPIFADMDTLKAEFFRAQNLLRGC 316
Query: 197 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMK 256
++IVGHNCFLD+ +IY F GPLP TAEEF ++K +P +IDTK + N
Sbjct: 317 PRVIVGHNCFLDMVYIYHTFIGPLPATAEEFQQKLHKLWPMVIDTKYMSTHNC------- 369
Query: 257 KSSTSLSKAFSVLCPQIALGSKSTHLA-LQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAF 315
+ P +L + L L+ V VE D ++ HEAGYD+F
Sbjct: 370 ----------GDIPPMSSLEQIADQLKHLETPV---VETDSQHRKYIDTTPFHEAGYDSF 416
Query: 316 MTGCVFAQACSHL 328
+T V + + L
Sbjct: 417 LTAQVAVRLSAKL 429
>gi|345329209|ref|XP_001509823.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Ornithorhynchus
anatinus]
Length = 735
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 145/327 (44%), Gaps = 70/327 (21%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FL +Y FD+N + GV YL+ EQE++ + + S +W + + L
Sbjct: 112 IEFLNRYGFDYNKFLKNGVPYLNEEQEERIQQALLS-------GNWKVRRTVDRDQL--- 161
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + ++ WL L ++ D ++L G T
Sbjct: 162 ------KAVIGEVTRWLA-LAQDGDR-------------------------MTLRGVTGF 189
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
Q+ IQLV+R+ D+ E + ++ S + E + E +
Sbjct: 190 QVFNIQLVLRQALPDVWTFPKDRE--------IVVQKVSREHRWCLENSPQDPCRKESIL 241
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
++ GF + +L+ +K +VGHN +D+ ++ KF+ PLP + E+F +V+ FP ++D
Sbjct: 242 LSARGFSVLFRMLAEARKPLVGHNMLMDLLFLHEKFYRPLPESYEQFKQNVHGLFPVLVD 301
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TK + +N+I ++ +++L A+ +L S++++L + S E +R +
Sbjct: 302 TKNV--TNAIWKELNFPRASNLFDAYEIL-------SRASYLPVVGS----SERSLLRVN 348
Query: 301 NWNSGVK-------HEAGYDAFMTGCV 320
G++ HEA YDAF+ G V
Sbjct: 349 RGAGGLQLVDSKYPHEAAYDAFLCGSV 375
>gi|440902237|gb|ELR53050.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Bos grunniens mutus]
Length = 531
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 140/329 (42%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y FD+N + G+ Y++ EQE K +KH T +W + +
Sbjct: 112 VQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKHNILT------GNWKVRSSLDKDQI--- 161
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + D ++ WL +EG ++L G
Sbjct: 162 ------KVVIDEVTRWLDL----AEEGD----------------------WMTLPGIAGF 189
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+RK D+ LR Q VIV S + L D + E
Sbjct: 190 QAFEVQLVLRKALPDIWTVLR-------DQGVIVKKVSTQHRWYLETTSCDRESCWKEKI 242
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP T +EF +++ FP +I
Sbjct: 243 LLSARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKFFRPLPETYDEFKLNIHNLFPVLI 302
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + S + + S + E V+
Sbjct: 303 DTKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIIHAS-RCEKYVE---- 355
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 356 ----TKYPHEAAYDAFLCGSVLLKV-AHL 379
>gi|350427143|ref|XP_003494666.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Bombus
impatiens]
Length = 821
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 114/463 (24%), Positives = 188/463 (40%), Gaps = 102/463 (22%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
M FLA +FDFN G+ YL+ +E
Sbjct: 109 MSFLASQEFDFNKLFKLGIPYLTASEE--------------------------------- 135
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
E++ RL E + RDE E+ P + + Q E I KM I TS
Sbjct: 136 ------EKLIKRLEEKQ----KIRDETLEILPITDVERPQIEDICRKMDEFI-----TSE 180
Query: 121 QLLLIQLVVRKHFKDLAY----------LRVSG--ENSCSQNVIVYIESESDKKMLMKEV 168
+ L+ + L Y LR+ EN V+ + ++ +++ E
Sbjct: 181 EEELVIDKCSAFIRRLVYQEAKLRWPNKLRIESKMENFGCNLVVQRLGTKEEEEQREIEK 240
Query: 169 KDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFI 228
+++++ + + ++ SI R + D KL+VGHN LD+ HI +FFG LP + EF
Sbjct: 241 REKEREEIQHAVGLSILMRKISD----SGKLLVGHNMLLDLCHIIHQFFGYLPESYLEFK 296
Query: 229 SSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSV 288
S ++ FP I+DTKI+ +S Q+ K++ P LG ++ P
Sbjct: 297 SLLHGLFPRILDTKIICHS-----QQFKEN-----------VPSSNLGILLETVSKSPFK 340
Query: 289 KVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLR 348
EVE D RS + + HEAGYDA++TG F ++LG + L+ + L
Sbjct: 341 ITEVEPIDGRSYSTLTEKCHEAGYDAYITGICFIALSNYLG-SLQNPEVPIVLSDSSLLD 399
Query: 349 EHVN-LLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWD 407
+N LL + INL + N ++H I F K W
Sbjct: 400 PFLNKLLIARLKDIPYINLVGED-------PNPNRDHILHITFP------------KEWR 440
Query: 408 IRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKG 450
+ IS+++ P + V +++T+ ++ R + V+ + + G
Sbjct: 441 FND-ISQLFSPFGGVHVSWLNDTSAYIGLHRRDQVNAVMKILG 482
>gi|332245325|ref|XP_003271811.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 1 [Nomascus
leucogenys]
Length = 520
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 149/329 (45%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W +R T
Sbjct: 101 VQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH------DILTGNW----RVRST----- 144
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
PD + + D ++ WL L + D ++L G T
Sbjct: 145 PDKDQIKVVIDEVTRWLD-LAKEGD-------------------------WMTLPGITGF 178
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ ++ L+ G V+V S+ ++ L D + E
Sbjct: 179 QAFEVQLVLRQALPNIWTVLKDEG-------VVVKKVSKQHRRYLQNTSCDRESCWKENI 231
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F ++++ FP +I
Sbjct: 232 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHRLFPVLI 291
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + +K++ + + + E V+
Sbjct: 292 DTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN-PTKTSGPEIVHASRCEKYVE---- 344
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 345 ----TKCPHEAAYDAFLCGSVLLKV-AHL 368
>gi|340716096|ref|XP_003396538.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Bombus
terrestris]
Length = 809
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 170/392 (43%), Gaps = 83/392 (21%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++G ++ +S KL+VGHN LD+ HI +FFG LP + EF S ++ FP I+DTK
Sbjct: 250 AVGLSILMRKISDSGKLLVGHNMLLDLCHIIHQFFGYLPESYLEFKSLLHDLFPRILDTK 309
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNW 302
I+ +S Q+ K++ P LG ++ P EVE D RS +
Sbjct: 310 IICHS-----QQFKEN-----------VPSSNLGILLETVSKSPFKITEVEPIDDRSYST 353
Query: 303 NSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVN-LLYLSWTNG 361
+ HEAGYDA++TG F ++LG + L+ + L +N LL +
Sbjct: 354 LAEKCHEAGYDAYITGICFIALSNYLG-SLQNPKVPIVLSDSSLLDPFLNKLLIARLKDI 412
Query: 362 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 421
INL + N ++H I F K W + IS+++ P
Sbjct: 413 PYINLVGED-------PNPNRDHILHITFP------------KEWRFND-ISQLFSPFGG 452
Query: 422 ISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYET 481
+ V +++T+ ++ R + V+ + + G + T
Sbjct: 453 VHVSWLNDTSAYIGLHRRDQVNAVMKILGKTN---------------------------T 485
Query: 482 YKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTKE---HESLRKVKAVNSDPSCG-E 537
YK + + +AD ++G+ +V + D+ ++ HE++ K NS P+ G +
Sbjct: 486 YK------IQR--YADYQASLGV-----IVGAGDRKRKLSSHEAVSPKKGENSVPTNGVK 532
Query: 538 RTKNKNFDDVSNDSSYSQLSSDEIIDSFYTRE 569
TK+ + +V+ + +LSS+ II Y E
Sbjct: 533 TTKDDDGWEVATGNDL-ELSSESIIPCSYPHE 563
>gi|301111876|ref|XP_002905017.1| Poly(A)-specific ribonuclease PARN-like protein [Phytophthora
infestans T30-4]
gi|262095347|gb|EEY53399.1| Poly(A)-specific ribonuclease PARN-like protein [Phytophthora
infestans T30-4]
Length = 589
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 146/333 (43%), Gaps = 59/333 (17%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL+++ FDFN I +G+ +++ + K + + L ++ +
Sbjct: 140 LQFLSEHGFDFNKFIGDGIPFVNLAKTPAMKKRLQRRID--------GLTKVNKNLQLSD 191
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ F + +K +L++W+ G ++ E +F R N F S
Sbjct: 192 DGMAFQKDVKQQLAKWIAG-----------------GAKKGEKLFVPTR-----NSFYS- 228
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+++ R +YL + Q + Y+ + +++ +VK+ +K +
Sbjct: 229 --MIVHETARAK---ASYLYSEAADGGVQ--VSYLSKKMKDELIAAKVKEMRK-----EM 276
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+IGF VI+ LS K +VGHN LD +++ +F PLP T EF + + + FP I D
Sbjct: 277 DEAIGFSKVIEALSESKLPVVGHNALLDFVYVFHQFCKPLPETLAEFKTQLLELFPTIYD 336
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLC------PQIALGSKSTHLALQPSVKVEVEV 294
TK + S L +++K ST LS F + P+ + S + ++K E +
Sbjct: 337 TK-HVTLRSPLGEKLK--STGLSSLFEYMRENVKPEPESLIPSDKRFDTYREALKAEADG 393
Query: 295 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 327
++ S + HEAG+DAFMT F +H
Sbjct: 394 NE-------SLLCHEAGFDAFMTAVCFLGLLAH 419
>gi|390345831|ref|XP_003726420.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Strongylocentrotus
purpuratus]
Length = 536
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 151/366 (41%), Gaps = 80/366 (21%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNST------YEDESLDSWHSLKEIRD 54
++FL K+ F+FN +EGVSYL+R++E++ + Y DE L KE
Sbjct: 109 IEFLCKHNFNFNKLFYEGVSYLTRDEEEELRSQAQTKPVQLARYMDEDLQ-----KEAIS 163
Query: 55 THLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISL 114
T +SEWL SE + Q+E L
Sbjct: 164 T-----------------ISEWL----------SEAHAGDELTVGQYE----------EL 186
Query: 115 NGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKI 174
+G LL+QLV++ F L + + ++ + V + + +K+ L + D+ K+
Sbjct: 187 DG------LLLQLVIQDSF---PLLNTCFDATTTRQMKVRVMATENKEGLEE---DQVKL 234
Query: 175 DAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKY 234
+ + +GF V L KK I+GHN D+ + KF PLP + F +N+
Sbjct: 235 GHRV-VDKLLGFTAVFRALVESKKPIIGHNLLTDLMLFFQKFHNPLPRSYSTFKVQLNEL 293
Query: 235 FPHIIDTKIL---LNSNSILQQRMKKSSTSLSKAFSVLCPQ--IALGSKSTHLALQPSVK 289
FP I DTK L + N ++ + +TSL L + I + S H+
Sbjct: 294 FPKIYDTKYLSFEMRRN-LIDAGLPVQNTSLGSLLDNLSTKEGILIVLHSPHIVHGSGFD 352
Query: 290 VEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNE---K 346
V N G HEAGYDA+ G VF + ++ +S L E K
Sbjct: 353 KYV----------NGGTLHEAGYDAYAAGYVFLRLAHYITAKDINVMASRPLDFREYMWK 402
Query: 347 LREHVN 352
L+++VN
Sbjct: 403 LKDYVN 408
>gi|332245327|ref|XP_003271812.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 2 [Nomascus
leucogenys]
Length = 531
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 149/329 (45%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W +R T
Sbjct: 112 VQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH------DILTGNW----RVRST----- 155
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
PD + + D ++ WL L + D ++L G T
Sbjct: 156 PDKDQIKVVIDEVTRWLD-LAKEGD-------------------------WMTLPGITGF 189
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ ++ L+ G V+V S+ ++ L D + E
Sbjct: 190 QAFEVQLVLRQALPNIWTVLKDEG-------VVVKKVSKQHRRYLQNTSCDRESCWKENI 242
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F ++++ FP +I
Sbjct: 243 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHRLFPVLI 302
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + +K++ + + + E V+
Sbjct: 303 DTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN-PTKTSGPEIVHASRCEKYVE---- 355
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 356 ----TKCPHEAAYDAFLCGSVLLKV-AHL 379
>gi|326915669|ref|XP_003204136.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Meleagris gallopavo]
Length = 514
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 95/411 (23%), Positives = 176/411 (42%), Gaps = 81/411 (19%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL+ Y FD+N + +G+ Y++ QE K ++ + S + +L
Sbjct: 82 IQFLSHYGFDYNKFLKDGIPYMNELQE----KILSQRLLEGSWKVYSAL----------- 126
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
++ ++ D ++ W+ EG A+ L +
Sbjct: 127 -NMNVVKKAIDEVTCWIAA----AKEGD----------------------AMILQELSDS 159
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
Q+L +QLV+R+ A V + V+V S +++L D + E+ +
Sbjct: 160 QMLDVQLVLRQ-----ALPNVWTQPLRDNEVLVKKVSPQHRRLLESSSHDSCR--KELIL 212
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
++ GF ++ ++ KK +VGHN +D+ H++ KF+ PLP + EEF +++ FP +ID
Sbjct: 213 TSARGFTNLFQIIVKAKKPLVGHNMLMDLCHLHDKFYNPLPESYEEFKKNIHHLFPVLID 272
Query: 241 TKILLNSNSILQQRMKKS------STSLSKAFSVLCPQIALGSKSTHLALQPSVKV-EVE 293
TK + + SI + ++ + S K ++ CP + S + PS V ++
Sbjct: 273 TKTV--TKSIWKPQVTREQVCNFVSNITRKDKNLTCPFVF---SSDLNPMDPSCPVIDLA 327
Query: 294 VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI----DFKQQSSSENLAHNEKLRE 349
D +R + HEA YDAF+ G V ++ +HL + D ++ S + L E
Sbjct: 328 SDSVRYA--GKAAPHEAAYDAFLCGSVLLKS-AHLLLCRLTDDAAKADSSFSQYLTMLAE 384
Query: 350 HVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFP 400
++N +N G +S + + YP L +V V G+P
Sbjct: 385 YLN----------KVNFIRGGVSSINFSGEDASCRYPPPL---VVCVRGWP 422
>gi|145538409|ref|XP_001454910.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422687|emb|CAK87513.1| unnamed protein product [Paramecium tetraurelia]
Length = 516
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 99/220 (45%), Gaps = 26/220 (11%)
Query: 166 KEVKDEQKIDAEMS-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 224
K+ KDE+K + + + GF + + + + KK IVGHNCF DI YS F P++
Sbjct: 228 KQAKDEEKYLLKTNRFQTKTGFYQIWECILNSKKYIVGHNCFADIMFCYSHFVQCPPISW 287
Query: 225 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 284
EEF V K++P I DTK ++ S L++ K TS S +A K+ +
Sbjct: 288 EEFKEDVVKHWPPIYDTKYIIQSAQPLEKIRSKFETSTS------VENLAEFIKNNMNYI 341
Query: 285 QPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHN 344
Q V N + H AG+DA+MTG +F +L DF QQ E L+
Sbjct: 342 QIDV------------NLDQNAYHTAGFDAYMTGFIFI----NLTKDFTQQ---ELLSQK 382
Query: 345 EKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNH 384
KL + N ++ E I L+ +RKN
Sbjct: 383 NKLNQFKNNYSINLNTAEDIKLTQKYIIYIKFPEEERKNQ 422
>gi|358413893|ref|XP_872807.3| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Bos taurus]
Length = 502
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 140/329 (42%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y FD+N + G+ Y++ EQE K +KH T +W + +
Sbjct: 83 VQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKHNILT------GNWKVRSSLDKDQI--- 132
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + D ++ WL +EG ++L G
Sbjct: 133 ------KVVIDEVTRWLDL----AEEGD----------------------WMTLPGIAGF 160
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+RK D+ LR Q VIV S + L D + E
Sbjct: 161 QAFEVQLVLRKALPDIWTVLR-------DQGVIVKKVSTQHRWYLETTSCDRESCWKEKI 213
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + +EF +++ FP +I
Sbjct: 214 LLSARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLNIHNLFPVLI 273
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + S + + S + E V+
Sbjct: 274 DTKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIIHAS-RCEKYVE---- 326
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 327 ----TKYPHEAAYDAFLCGSVLLKV-AHL 350
>gi|395515097|ref|XP_003761743.1| PREDICTED: poly(A)-specific ribonuclease PARN [Sarcophilus
harrisii]
Length = 667
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 138/332 (41%), Gaps = 49/332 (14%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 131 IDFLANQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQSNGAGALSYVSPNASKC 187
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P ++ ++ K +++ E + L++N + + + P GF
Sbjct: 188 PVVIPEDQKKFIEKVVEKIEDLIQNEENKN-----------------LDLEPC---TGF- 226
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 227 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKYAKEQE----- 280
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 281 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTIHQFYCPLPEDLNEFKEVTTCVFPRL 340
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 341 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKEAPFNPPKVESAEGF 384
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 329
S + S HEAGYDA++TG F + LG
Sbjct: 385 PSYDTASEQLHEAGYDAYITGLCFISMANFLG 416
>gi|224129918|ref|XP_002320703.1| predicted protein [Populus trichocarpa]
gi|222861476|gb|EEE99018.1| predicted protein [Populus trichocarpa]
Length = 544
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 107/445 (24%), Positives = 189/445 (42%), Gaps = 69/445 (15%)
Query: 55 THLFNIPDILFAERMKDRLSEWLGGL--LRNRDEGSEVQPSFNDS--KQQFETIFFKMRP 110
T ++ D +F ER+K + W R EG+++Q + S K + RP
Sbjct: 136 TSTLSVADSVFVERIKSHIKNWKKACKETSTRKEGNQIQDALVRSLRKLVLGNEEYDSRP 195
Query: 111 AISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVK 169
++++ + Q L+ ++++ D+ L + + Q V +V S+ DK +L +++
Sbjct: 196 CMNIDVCSERQAQLVVEMLQEFADDVVPLIIPAKGGAMQAVRVVLTSSKEDKDLLQGKLQ 255
Query: 170 -DEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFI 228
DEQ++ ++ GFR VIDL+S+ +K +V H PLP T +EF+
Sbjct: 256 NDEQELKKKVR-----GFREVIDLISASQKPVVSHG----------SLNAPLPPTVDEFM 300
Query: 229 SSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSV 288
S+ FP +ID L+ S L++ TS+ A S L + P +
Sbjct: 301 CSLRLAFPLVIDVNHLMKEISALRK-----VTSIPVAISQL----------KNRFFTP-I 344
Query: 289 KVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLR 348
+E+ + N H G + +FA+ CS L ID S E + L
Sbjct: 345 DMEIPCQAME----NEDTIH--GQNVVKICELFARLCSILKIDPAAVKSDEEKGAS-ALE 397
Query: 349 EHVNLLYLSWT------NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSH 402
+ N+ T +GEI + +NK N+ + E +V +WGF
Sbjct: 398 AYANIFSPFCTASEEPIDGEI-----------KIWTNKWTNNTRTVSCEDLVFLWGFGDR 446
Query: 403 LKAWDIRECISKVYGPTSV-ISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISV 461
+ A ++ + + + S V VD + V F + + FL+ ++++ +D +
Sbjct: 447 VTAGVLKSLLQESHEAFSKEFDVRLVDNSCAIVIFWQHGLTETFLN---TMNKCSD---M 500
Query: 462 LHPLAKLLEGGNTCAASYETYKEIC 486
PL +++ G AA YETY C
Sbjct: 501 RGPLREMVSEGLR-AAGYETYNRAC 524
>gi|297478860|ref|XP_002690421.1| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Bos taurus]
gi|296483863|tpg|DAA25978.1| TPA: poly(A)-specific ribonuclease (PARN)-like domain containing
1-like [Bos taurus]
Length = 524
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 140/329 (42%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y FD+N + G+ Y++ EQE K +KH T +W + +
Sbjct: 105 VQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKHNILT------GNWKVRSSLDKDQI--- 154
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + D ++ WL +EG ++L G
Sbjct: 155 ------KVVIDEVTRWLDL----AEEGD----------------------WMTLPGIAGF 182
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+RK D+ LR Q VIV S + L D + E
Sbjct: 183 QAFEVQLVLRKALPDIWTVLR-------DQGVIVKKVSTQHRWYLETTSCDRESCWKEKI 235
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + +EF +++ FP +I
Sbjct: 236 LLSARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLNIHNLFPVLI 295
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + S + + S + E V+
Sbjct: 296 DTKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIIHAS-RCEKYVE---- 348
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 349 ----TKYPHEAAYDAFLCGSVLLKV-AHL 372
>gi|350581696|ref|XP_003124631.3| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial [Sus
scrofa]
Length = 523
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 125/288 (43%), Gaps = 43/288 (14%)
Query: 156 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 215
E E ++ K+ K+++++ K ++GF VI +++ KL++GHN LD+ H +
Sbjct: 131 EEERKRREQQKQAKEQEEL------KDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQ 184
Query: 216 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 275
F+ PLP EF FP ++DTK++ + ++ F + +L
Sbjct: 185 FYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSL 228
Query: 276 GSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 334
L P +VE + S + S HEAGYDA++TG F ++LG F
Sbjct: 229 AELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLS 287
Query: 335 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 394
A ++ + N L+L ++++ N L +++H V
Sbjct: 288 PPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------V 332
Query: 395 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 333 LHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 376
>gi|189240485|ref|XP_967921.2| PREDICTED: similar to Parn-A protein [Tribolium castaneum]
gi|270011407|gb|EFA07855.1| hypothetical protein TcasGA2_TC005425 [Tribolium castaneum]
Length = 584
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 108/253 (42%), Gaps = 39/253 (15%)
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
IGF V+ ++ KLIVGHN LD H KF PL + EEF + F +++DTK
Sbjct: 260 IGFTKVLRIIVESGKLIVGHNMCLDFLHTIDKFLTPLSVNYEEFKDCAHSLFRNVLDTKF 319
Query: 244 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 303
+ S S F L L S ++ P VEV+ +
Sbjct: 320 M----------------SSSDEFKDLIQSTVLKSVLETVSKTPFAIPPVEVEKGGQGYFV 363
Query: 304 SGVK-HEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSW-TNG 361
+K HEAGYDA++TG F ++LG K+ S E L+ ++N L+L +
Sbjct: 364 EDLKEHEAGYDAYITGLCFISMWNYLGT-LKKLSIEETFKDFALLKPYLNKLFLMMLRDS 422
Query: 362 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 421
+ INL G+ N ++H V FP K +I E ++ P
Sbjct: 423 QYINLEGGD-------PNPPRDH---------VFYLTFPKEWKQSNIIE----LFSPFGG 462
Query: 422 ISVYHVDETAVFV 434
+ V ++ET+ +V
Sbjct: 463 VYVSWINETSAYV 475
>gi|311243695|ref|XP_001926376.2| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Sus scrofa]
Length = 531
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 141/329 (42%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y FD+N + G+ Y++ EQE K ++ + +W + +
Sbjct: 112 VQFLNQYGFDYNKFLKNGIPYMNEEQEKKIRHNILT-------GNWRVRSSLDKDQI--- 161
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + D ++ WL +EG ++L G T
Sbjct: 162 ------KVVIDEVTRWLDL----AEEGD----------------------WMTLPGITGF 189
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+RK ++ LR Q VIV S+ + L D + E
Sbjct: 190 QAFEVQLVLRKALPNIWTVLR-------DQGVIVKKVSKQHRWYLENTSCDRESCWKEKI 242
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + E+F +++ FP +I
Sbjct: 243 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYEDFKLNIHNLFPILI 302
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + + ++ ++LS+ + VL + S + + S K E V+
Sbjct: 303 DTKNV--TKDVWKELSFPRVSNLSEVYEVLNSDLNPTKDSGPVIIHAS-KCEKYVE---- 355
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 356 ----TKYPHEAAYDAFLCGSVLLKV-AHL 379
>gi|426254331|ref|XP_004020832.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Ovis
aries]
Length = 463
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 125/288 (43%), Gaps = 43/288 (14%)
Query: 156 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 215
E E ++ K K++++++ ++GF VI +++ KL++GHN LD+ H +
Sbjct: 71 EEERKRREQQKHAKEQEELND------AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQ 124
Query: 216 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 275
F+ PLP EF FP ++DTK++ + ++ F + +L
Sbjct: 125 FYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSL 168
Query: 276 GSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 334
L P +VE + S + S HEAGYDA++TG F ++LG F
Sbjct: 169 AELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLS 227
Query: 335 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 394
S A ++ + N L+L ++++ N L +++H V
Sbjct: 228 PPKSHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------V 272
Query: 395 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 273 LHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 316
>gi|449497560|ref|XP_002188970.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Taeniopygia guttata]
Length = 496
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 132/280 (47%), Gaps = 66/280 (23%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL+ Y FD+N + +G+ Y++ QE+ +H+ + D+W D
Sbjct: 126 IQFLSHYGFDYNKFLKDGIPYMNEVQEEILRQHLLA-------DTWKVCSTNVDR----- 173
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D+L ++ D ++ W+ + ++E + + N + + G+
Sbjct: 174 -DVL--KKAIDEVTSWI---VAAKEEDTMILQDLN----------------VVVYGY--- 208
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQK------- 173
++ +QLV+R+ ++ V+ E D K+++K+V E +
Sbjct: 209 HMIEVQLVLRQALEN-----------------VWTEPLEDNKVMVKKVSPEHRQLLENSS 251
Query: 174 ---IDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISS 230
++ + ++ GF ++ +L KK +VGHN +D+ H++ KF+ PLP + EEF +
Sbjct: 252 DDHCQKKLILLSARGFTNLFQILVKVKKPLVGHNMLMDLMHLHDKFYRPLPESYEEFKRN 311
Query: 231 VNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC 270
++ FP IIDTK + + S+ ++ + +SL + ++VLC
Sbjct: 312 IHNLFPVIIDTKTV--TKSVQKKFLFPRVSSLMEVYAVLC 349
>gi|156384950|ref|XP_001633395.1| predicted protein [Nematostella vectensis]
gi|156220464|gb|EDO41332.1| predicted protein [Nematostella vectensis]
Length = 449
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 148/323 (45%), Gaps = 58/323 (17%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FL ++ FDFN +++GV +L+ EQE V S + ++L + ++RD I
Sbjct: 111 LEFLCQHDFDFNKFVYQGVPFLNEEQESM----VRSQHNQKTLHAGMQSLQLRD-----I 161
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D + + +++ EW L+ + G + + + + Q+ + +++ ++N
Sbjct: 162 DDQIISCSC-NKVDEW----LKTANIGDNMTLNAHTAVGQY-LLLLELQKQSTMNQ---- 211
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+R +DL + ++ + +CS+ + +E ++++L+
Sbjct: 212 --------LRYEVQDLYQIVITRQTNCSEEAMKKHLAEQEERILL--------------- 248
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+ IGF + LL KK ++GHN F D+ IY K + PLP ++F + +++ FP++ D
Sbjct: 249 -SVIGFSRIFKLLVKHKKPLIGHNMFTDLMLIYDKLYKPLPDCYDDFKADIHRLFPYVYD 307
Query: 241 TKIL---LNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKST--HLALQPSVKVEVEVD 295
TK + + L++ ST+L Q AL S+ ++ P + +
Sbjct: 308 TKHIAFKIRKQPQLKECEFLDSTNLEDL------QTALESREAKYYVLYNPLITLSKSAQ 361
Query: 296 DIRSSNWNSGVKHEAGYDAFMTG 318
N HEAGYD+++ G
Sbjct: 362 RYEYENH----PHEAGYDSYLAG 380
>gi|297292013|ref|XP_002808449.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1-like [Macaca
mulatta]
Length = 538
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 152/348 (43%), Gaps = 76/348 (21%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W +R +
Sbjct: 119 VQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH------DILTGNW----RVRSS----- 162
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
PD + + D+++ WL L + D ++L G
Sbjct: 163 PDKDQIKAVIDKVTRWLD-LAKEGD-------------------------WMTLPGIAGF 196
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ D+ L+ G V+V S+ + L D + E
Sbjct: 197 QAFEVQLVLRQALPDIWTVLKDEG-------VVVKKVSKQHRWYLQNTSCDRESCWKEKI 249
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +I
Sbjct: 250 LLSARGFSVXFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLI 309
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + L P+ E+ + +
Sbjct: 310 DTKNV--TKDIWKEMNFPRVSNLSEVYEVL-----------NSDLNPTKNSGPEI--VHA 354
Query: 300 SNWNSGVK----HEAGYDAFMTGCVFAQACSHL------GIDFKQQSS 337
S VK HEA YDAF+ G V + +HL GID +SS
Sbjct: 355 SRCEKYVKTKCPHEAAYDAFLCGSVLLKV-AHLLLQKIHGIDPVPESS 401
>gi|345784478|ref|XP_541182.3| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Canis lupus familiaris]
Length = 531
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 141/329 (42%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y FD+N + G+ Y++ EQE K +KH T +W + +
Sbjct: 112 VQFLNQYGFDYNKFLKNGIPYMNEEQE-KKIKHNILT------GNWRVRSSLDKDQI--- 161
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + D ++ WL +EG ++L G
Sbjct: 162 ------KVVIDEVTRWLDL----AEEGD----------------------WMTLPGIAGF 189
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ D+ LR Q +IV S+ + L D + E
Sbjct: 190 QAFEVQLVLRQALPDIWTVLR-------DQGIIVKKVSKQHRWYLENTSCDRESCWKEKI 242
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +I
Sbjct: 243 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKLNIHNLFPILI 302
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + S + + S K E V+
Sbjct: 303 DTKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVVIHAS-KCEKYVE---- 355
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 356 ----TKYPHEAAYDAFLCGSVLLKV-AHL 379
>gi|383863398|ref|XP_003707168.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Megachile rotundata]
Length = 533
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 159/380 (41%), Gaps = 93/380 (24%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKA----LKHVNSTYEDESLDSWHSLKEIRDTH 56
++FL+++ FDFN ++ G+ YL+ EQ++K+ LK NSTY + H
Sbjct: 110 LEFLSRHNFDFNKLVNHGIPYLN-EQDEKSFRQYLKETNSTY--------------KLNH 154
Query: 57 LFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 116
L + F E M +++ WL R+ EV P +
Sbjct: 155 LSYDDETNFKECM-NKIQNWLFSNSRDFAVKLEVN-----------------NPLV---- 192
Query: 117 FTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDA 176
Q L+ ++V+ EN + +I ++ + KK+ ++E D
Sbjct: 193 ----QYLIHEIVI--------------ENYDNIRIIPGYKTITLKKVSANNFQEEDNGDL 234
Query: 177 EMSIKAS-IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
E + S IGF V LL S KK I+GHN D+ Y +F+ PLP EF +++ F
Sbjct: 235 EQVVLDSYIGFSKVFKLLCSSKKPIIGHNVLFDLMFTYQQFYKPLPAQYSEFKRNIHSIF 294
Query: 236 PHIIDTKILLNSNSILQQRM----------KKSSTSLSKAFSVLCPQIALGSKSTHLALQ 285
P I DTK L SI +R+ K+SS + F S L L
Sbjct: 295 PQIYDTKFL----SIELRRLYIDEGKEIHWKQSSLNYIYEFFT-------SSAGKFLTLN 343
Query: 286 -PSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI-DFKQQSSSENLAH 343
P+V ++ D+ + H AG+D+F+ G +F + S + + + H
Sbjct: 344 SPTVNLKHTSSDVNNY-------HNAGWDSFIAGFIFIKVGSVFSLKKYGSGLVERGITH 396
Query: 344 NEKL---REHVNLLYLSWTN 360
+E L +E VN + +S +N
Sbjct: 397 SELLSGVKEFVNSINISRSN 416
>gi|426235017|ref|XP_004011487.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Ovis aries]
Length = 529
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 139/328 (42%), Gaps = 64/328 (19%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y FD+N + G+ Y++ EQE K +KH T +W + +
Sbjct: 112 VQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKHNILT------GNWKVRSSLDKDQI--- 161
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + D ++ WL +EG ++L G
Sbjct: 162 ------KVVIDEVTRWLD----LAEEGD----------------------WMTLPGIAGF 189
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+RK ++ LR Q VIV S + L D + E
Sbjct: 190 QAFEVQLVLRKALPEIWTVLR-------DQGVIVKKVSTQHRWYLENTSCDRESCWKEKI 242
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + +EF +++ FP +I
Sbjct: 243 LLSARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLNIHNLFPVLI 302
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + S + + S + E V+
Sbjct: 303 DTKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIIHAS-RCEKYVE---- 355
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSH 327
+ HEA YDAF+ G + CSH
Sbjct: 356 ----TKYPHEAAYDAFLCG---SGECSH 376
>gi|449303050|gb|EMC99058.1| hypothetical protein BAUCODRAFT_59256, partial [Baudoinia
compniacensis UAMH 10762]
Length = 438
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 145/365 (39%), Gaps = 78/365 (21%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFL K FD + + GV Y+SR+ E + + +++ +D+S + +K L
Sbjct: 112 VDFLLKVGFDISRPFYHGVPYISRD-ESREAREMHAKRQDKSAMADIQIKPTETESL--- 167
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
F +R++ ++ WL +D+ + P + + + +G +
Sbjct: 168 ---AFLDRVRSEINGWLQSSNTAKDDYININPIGAEGGNE---------DGAASDGLSRF 215
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESE----SDKKMLMKEVKDEQK--- 173
+ L+ +VR + DL L G+ Q V E E +D+K + E + QK
Sbjct: 216 EKRLVHQLVRAEYPDLVSL---GKAGFVQVVRFNKEREDKVAADRKRELNERINRQKGFR 272
Query: 174 ----------------------------IDAEMSIKASIGFRHVIDLLSSEKKLIVGHNC 205
+ A+M + S F LL ++IVGHNC
Sbjct: 273 WVVEALLGSDITRLDLRECARDPVTGEQVFADMD-EFSAQFHRAQTLLRGNPRVIVGHNC 331
Query: 206 FLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKA 265
FLD+ +IY F G LP + E F ++ +P IIDTK + N
Sbjct: 332 FLDLVYIYRTFIGQLPDSVEAFQRKLHGLWPTIIDTKYMSTHN----------------- 374
Query: 266 FSVLCPQIALGSKSTHLALQPSVK--VEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQ 323
C I+ S +A Q S + ++EVD HEAGYD+F+T + +
Sbjct: 375 ----CGDISPVSSLEQIAAQLSAESVPKIEVDPQHDKYEAVEAFHEAGYDSFLTAQIAVK 430
Query: 324 ACSHL 328
S L
Sbjct: 431 LSSKL 435
>gi|348686050|gb|EGZ25865.1| hypothetical protein PHYSODRAFT_540459 [Phytophthora sojae]
Length = 606
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 144/333 (43%), Gaps = 59/333 (17%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL+++ FDFN I +G+ +++ + K + + L ++ +
Sbjct: 149 LQFLSEHGFDFNKFIGDGIPFVNLAKTPVMKKRLQRRID--------GLTKVNKNLQLSD 200
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ F + + ++L +W+ G ++ E + R N F S
Sbjct: 201 DGVAFQKDVNEQLDQWIAG-----------------GAKKGEKLLVPTR-----NSFYS- 237
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+++ VR +YL + + Y+ + ++++ +VKD ++ +
Sbjct: 238 --MVVHETVRSK---ASYLYSEAAEGGVE--VSYVSKKIKEELIAAKVKDMRR-----EM 285
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+IGF VI+ LS K +VGHN LD +++ +F+ PLP T EF + + FP I D
Sbjct: 286 DEAIGFSKVIEALSESKLPVVGHNALLDFVYVFHQFYKPLPETLAEFKTQLLGLFPTIYD 345
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLC------PQIALGSKSTHLALQPSVKVEVEV 294
TK + S L ++K ST LS F + P+ + S + ++K E +
Sbjct: 346 TK-HVTLRSPLGDKLK--STGLSSLFEYMRENVKPEPESLIPSDEHFDTYRQALKAEADG 402
Query: 295 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 327
++ S + HEAG+DAFMT F +H
Sbjct: 403 NE-------SLLCHEAGFDAFMTAVCFLGLLAH 428
>gi|197102228|ref|NP_001126488.1| poly(A)-specific ribonuclease PARN-like domain-containing protein 1
precursor [Pongo abelii]
gi|75070545|sp|Q5R6R6.1|PNDC1_PONAB RecName: Full=Poly(A)-specific ribonuclease PARN-like
domain-containing protein 1; Flags: Precursor
gi|55731677|emb|CAH92544.1| hypothetical protein [Pongo abelii]
Length = 520
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 147/329 (44%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W +R +
Sbjct: 101 VQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH------DILTGNW----RVRSS----- 144
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
PD + + D ++ WL L + D ++L G T
Sbjct: 145 PDKDQIKVVIDEVTRWLD-LAKEGD-------------------------WMTLPGITGF 178
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ ++ L+ G V+V S+ + L D + E
Sbjct: 179 QAFEVQLVLRQALPNIWTVLKDEG-------VVVKKVSKQHRWYLQNTSCDRESCWKENI 231
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +I
Sbjct: 232 LLSARGFSAFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLI 291
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LSK + VL + +K++ + + + E V+
Sbjct: 292 DTKSV--TKDIWKEMNFPRVSNLSKVYEVLNSDLN-PTKNSGPEIVHASRCEKYVE---- 344
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 345 ----TKCPHEAAYDAFLCGSVLLKV-AHL 368
>gi|402868642|ref|XP_003898404.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Papio anubis]
Length = 531
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/384 (25%), Positives = 165/384 (42%), Gaps = 78/384 (20%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W +R +
Sbjct: 112 VQFLNQYGFNYNKFLKNGIPYMNEEQE-KKIRH------DILTGNW----RVRSS----- 155
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
PD + + D+++ WL L + D ++L G
Sbjct: 156 PDKDQIKAVIDKVTRWLD-LAKEGD-------------------------WMTLPGIAGF 189
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ D+ L+ G V+V S+ + L D + E
Sbjct: 190 QAFEVQLVLRQALPDIWTVLKDEG-------VVVKKVSKQHRWYLQNTSCDRESCWKEKI 242
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +I
Sbjct: 243 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLI 302
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + L P+ E+ + +
Sbjct: 303 DTKNV--TKDIWKEMNFPRVSNLSEVYEVL-----------NSDLNPTKNSGPEI--VHA 347
Query: 300 SNWNSGVK----HEAGYDAFMTGCVFAQACSHL------GIDFKQQSSSENLAHNEKLRE 349
S VK HEA YDAF+ G V + +HL GID +SS + + L
Sbjct: 348 SRCEKYVKTKCPHEAAYDAFLCGSVLLKV-AHLLLQKIHGIDPVPESSFPQ--YLDVLAP 404
Query: 350 HVNLLYLSWTNGEIINLSTGNRTS 373
+VN + L IN S + S
Sbjct: 405 YVNQVNLIRAGVPKINFSGPDYPS 428
>gi|328785451|ref|XP_623432.3| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Apis mellifera]
Length = 535
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 149/338 (44%), Gaps = 77/338 (22%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FL K+ F+FN + EG+S+L E ++K LK N ED + + L + N
Sbjct: 110 LEFLCKHNFEFNKFLKEGISFLD-ETDEKLLK--NYIKEDSLAYNLNHLTYEEENEFIN- 165
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
K ++SEW+ + +L TS+
Sbjct: 166 --------YKTKISEWIAN-----------------------------KSGETLKVETSN 188
Query: 121 QLL--LIQLVVRKHFKDLAYLRVSGENSC-----SQNVIVYIESESDKKMLMKEVKDEQK 173
+L LI +R ++K++ +S + S S N+ +I E+DK+ L KE+ D
Sbjct: 189 PILQYLIHKDIRHNYKNV--WSISDDKSVNIIEISPNMHEFIR-ENDKETLEKELLD--- 242
Query: 174 IDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNK 233
IGF V LL+S KK+IVGHN LD+ ++ +F+ PLP + EF ++++
Sbjct: 243 --------YYIGFSIVFKLLASSKKIIVGHNILLDLMFMHQQFYKPLPNSYNEFKKNIHE 294
Query: 234 YFPHIIDTKIL------LNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPS 287
FP I DTK L L S + ++ ST L + F+ + L S + + S
Sbjct: 295 LFPQIYDTKFLSYEVRKLFSKEEVSWKISSLST-LYEYFTTKGKLLTLNSPKIAMNNEES 353
Query: 288 VKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQAC 325
++ +D+ + H AG+DA+ G ++ +
Sbjct: 354 SNSDIILDEKKY--------HTAGWDAYFAGYIYIKMA 383
>gi|71894805|ref|NP_001025800.1| poly(A)-specific ribonuclease PARN [Gallus gallus]
gi|53133784|emb|CAG32221.1| hypothetical protein RCJMB04_20e14 [Gallus gallus]
Length = 574
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 135/303 (44%), Gaps = 49/303 (16%)
Query: 153 VYIES-ESDKK---MLMKEVKDEQKIDAEMSIKA--------SIGFRHVIDLLSSEKKLI 200
+++E+ ESDKK +++ +V +E++ E +A ++GF V+ +++ KL+
Sbjct: 164 IHVETLESDKKERYIVISKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLV 223
Query: 201 VGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSST 260
+GHN LD+ H +F+ PLP EF + FP ++DTK++ +
Sbjct: 224 IGHNMLLDVMHTIHQFYCPLPDDLSEFKEVTSCVFPRLLDTKLMAS-------------- 269
Query: 261 SLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGC 319
++ F + +L L P +VE + S + S HEAGYDA++TG
Sbjct: 270 --TQPFKDIINNTSLAELEKRLKEVPFSPPKVESAEGFPSYDTASEQLHEAGYDAYITGL 327
Query: 320 VFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASN 379
F + LG F + A ++ + N L+L ++++ N L
Sbjct: 328 CFISMANFLG-SFLSPPKNHVSARSKLIEPFFNKLFLM----RVMDIPYLNLQGPDL--Q 380
Query: 380 KRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRA 439
+++H V+ FP K D+ + S +G I V +D+T+ FV S+
Sbjct: 381 PKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---NIQVSWIDDTSAFVSLSQP 427
Query: 440 EMV 442
E V
Sbjct: 428 EQV 430
>gi|307192585|gb|EFN75773.1| Poly(A)-specific ribonuclease PARN [Harpegnathos saltator]
Length = 600
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 101/196 (51%), Gaps = 20/196 (10%)
Query: 166 KEVKDEQKIDAE-MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 224
+E K+ Q+ + E + ++G +++ + + K IVGHN LD+ HI +F PLP
Sbjct: 234 EEAKENQRREKEKLEFDQAVGVSNLLKKVLNSGKTIVGHNMLLDLCHIIRQFVTPLPADY 293
Query: 225 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 284
EF + V+ FP ++DTK++ S ++ + SST+L+ ++
Sbjct: 294 SEFKNLVHDLFPSLLDTKVICQSQP-FKEHISPSSTNLNTLLKIMS-------------- 338
Query: 285 QPSVKVEVEVDDIRSSNWNSGVK--HEAGYDAFMTGCVFAQACSHLG-IDFKQQSSSENL 341
+P + +V+ I +++ + HEAGYDA++TG F ++LG I + ++ E L
Sbjct: 339 KPPFSIP-DVEPIEGCSYSISTEKLHEAGYDAYITGLCFIALSNYLGTIKQSEDAADEVL 397
Query: 342 AHNEKLREHVNLLYLS 357
A + L+ +N L +S
Sbjct: 398 ADSSLLKPFLNKLPVS 413
>gi|449277437|gb|EMC85602.1| Poly(A)-specific ribonuclease PARN, partial [Columba livia]
Length = 552
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 113/261 (43%), Gaps = 37/261 (14%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GF VI +++ KL++GHN LD+ H +F+ PLP EF + FP ++DTK
Sbjct: 262 AVGFSRVIHAIANSGKLVIGHNMLLDVMHTIHQFYCPLPDDLSEFKELTSCVFPRLLDTK 321
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 301
++ + ++ F + +L L P +VE + S +
Sbjct: 322 LMAS----------------TQPFKEIINNTSLAELEKRLKEVPFSPPKVESAEGFPSYD 365
Query: 302 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 361
S HEAGYDA++TG F + LG F S A +E + N L+L
Sbjct: 366 TASEQLHEAGYDAYITGLCFISMANFLG-SFLSPPKSHVSARSELIEPFFNKLFLM---- 420
Query: 362 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 421
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 421 RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---N 465
Query: 422 ISVYHVDETAVFVQFSRAEMV 442
I V +D+T+ FV S+ E V
Sbjct: 466 IQVSWIDDTSAFVSLSQPEQV 486
>gi|355562180|gb|EHH18812.1| hypothetical protein EGK_15481, partial [Macaca mulatta]
gi|355749010|gb|EHH53493.1| hypothetical protein EGM_14142, partial [Macaca fascicularis]
Length = 530
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 96/384 (25%), Positives = 165/384 (42%), Gaps = 78/384 (20%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W +R +
Sbjct: 112 VQFLNQYGFNYNKFLKNGIPYMNEEQE-KKIRH------DILTGNW----RVRSS----- 155
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
PD + + D+++ WL L + D ++L G
Sbjct: 156 PDKDQIKAVIDKVTRWLD-LAKEGD-------------------------WMTLPGIAGF 189
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ D+ L+ G V+V S+ + L D + E
Sbjct: 190 QAFEVQLVLRQALPDIWTVLKDEG-------VVVKKVSKQHRWYLQNTSCDRESCWKEKI 242
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +I
Sbjct: 243 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLI 302
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + L P+ E+ + +
Sbjct: 303 DTKNV--TKDIWKEMNFPRVSNLSEVYEVL-----------NSDLNPTKNSGPEI--VHA 347
Query: 300 SNWNSGVK----HEAGYDAFMTGCVFAQACSHL------GIDFKQQSSSENLAHNEKLRE 349
S VK HEA YDAF+ G V + +HL GID +SS + + L
Sbjct: 348 SRCEKYVKTKCPHEAAYDAFLCGSVLLKV-AHLLLQKIHGIDPVPESSFPQ--YLDVLAP 404
Query: 350 HVNLLYLSWTNGEIINLSTGNRTS 373
+VN + L IN S + S
Sbjct: 405 YVNQVNLIRAGVPKINFSGPDYPS 428
>gi|85544056|pdb|2A1R|A Chain A, Crystal Structure Of Parn Nuclease Domain
gi|85544057|pdb|2A1R|B Chain B, Crystal Structure Of Parn Nuclease Domain
gi|85544060|pdb|2A1S|A Chain A, Crystal Structure Of Native Parn Nuclease Domain
gi|85544061|pdb|2A1S|B Chain B, Crystal Structure Of Native Parn Nuclease Domain
gi|85544062|pdb|2A1S|C Chain C, Crystal Structure Of Native Parn Nuclease Domain
gi|85544063|pdb|2A1S|D Chain D, Crystal Structure Of Native Parn Nuclease Domain
Length = 430
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 140/333 (42%), Gaps = 51/333 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 169
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGS-EVQPSFNDSKQQFETIFFKMRPAISLNGF 117
P + ++ K D++ E + LL++ + + +++P GF
Sbjct: 170 PVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPC---------------------TGF 208
Query: 118 TSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE 177
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 209 --QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE---- 262
Query: 178 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 237
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP
Sbjct: 263 -ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPR 321
Query: 238 IIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDD 296
++DTK++ + ++ F + +L L P +VE +
Sbjct: 322 LLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEG 365
Query: 297 IRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 329
S + S HEAGYDA++TG F ++LG
Sbjct: 366 FPSYDTASEQLHEAGYDAYITGLCFISMANYLG 398
>gi|328767409|gb|EGF77459.1| hypothetical protein BATDEDRAFT_36029 [Batrachochytrium
dendrobatidis JAM81]
Length = 581
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 97/185 (52%), Gaps = 19/185 (10%)
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
+GFR VID++ + +K IVGHN LD+ HI +F PLP T EE+ VN+ FP + DTK
Sbjct: 247 VGFRKVIDIMVAAQKPIVGHNMSLDLFHIIHRFIQPLPDTWEEYKDIVNRNFPSVFDTKF 306
Query: 244 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 303
+ SN LQ + +T+L + + + + S LA+ + +D+R
Sbjct: 307 MAISNKNLQTAI--INTTLGNLYDSILKE-PFDAPSIKLAM----GFDSYANDVRE---- 355
Query: 304 SGVKHEAGYDAFMTGCVFAQACSHLG-IDFKQQSSSENLAHNEKLREHVNLLYLSWTNGE 362
H+AG+DA+++G F + LG +D S+S + + L N LY+ +++
Sbjct: 356 ---LHKAGFDAYISGVSFLKM---LGLVDSLPVSTSIDWTSDFSLHCK-NKLYIMYSDIP 408
Query: 363 IINLS 367
+NLS
Sbjct: 409 FLNLS 413
>gi|443682487|gb|ELT87068.1| hypothetical protein CAPTEDRAFT_222843 [Capitella teleta]
Length = 590
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 151/350 (43%), Gaps = 75/350 (21%)
Query: 15 IHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLS 74
++EG+S L+ EQE KH +R+ LF+
Sbjct: 182 VYEGISVLNEEQEKTLSKH------------------LRENELFS--------------- 208
Query: 75 EWLGGLLRNRDEGS------EVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLV 128
GL+R+ DE S +V N S ++ E FF + P + + ++I+
Sbjct: 209 ----GLIRDVDESSLQSVCLQVTNWLNQSPKESE-FFFTIPPELP-------EYIIIK-E 255
Query: 129 VRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRH 188
+R+ F ++ G+ I+ +D+++ M+E D ++ + + K +GF
Sbjct: 256 LRQRFSNIWITAEKGK-------ILVQRVTTDERIKMEE--DSKQAEEKKITKKMLGFTQ 306
Query: 189 VIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNS- 247
V L KK ++GHNCF D+ +Y K + PLP + + + ++ FP I DTK + +
Sbjct: 307 VFRSLIKSKKPLIGHNCFTDLLFLYEKCYQPLPESYLTYKAKLHTLFPIIYDTKSISSGL 366
Query: 248 NSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK 307
+ + LSK F L G+K+ L L EV + S +
Sbjct: 367 RKTFDSEGYFNDSKLSKLFENLT-----GAKTPMLTL---CNPEVNHHPLSSRYKTEMLY 418
Query: 308 HEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLA-----HNEKLREHVN 352
HEAG+DA+MTG VF Q + + + SSE A ++ L+++VN
Sbjct: 419 HEAGFDAYMTGLVFLQTAHIVHYEAYRHLSSEMKAPSFHQYSVALKQYVN 468
>gi|194389110|dbj|BAG61572.1| unnamed protein product [Homo sapiens]
Length = 464
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 43/288 (14%)
Query: 156 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 215
E E ++ K K++++++ ++GF VI +++ KL++GHN LD+ H +
Sbjct: 71 EEERKRREQQKHAKEQEELND------AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQ 124
Query: 216 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 275
F+ PLP EF FP ++DTK++ + ++ F + +L
Sbjct: 125 FYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSL 168
Query: 276 GSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 334
L P +VE + S + S HEAGYDA++TG F ++LG F
Sbjct: 169 AELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLS 227
Query: 335 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 394
A ++ + N L+L ++++ N L +++H V
Sbjct: 228 PPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------V 272
Query: 395 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 273 LHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 316
>gi|402907752|ref|XP_003916630.1| PREDICTED: poly(A)-specific ribonuclease PARN [Papio anubis]
Length = 621
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 98/444 (22%), Positives = 177/444 (39%), Gaps = 85/444 (19%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 169
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 170 PVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 208
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 209 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 262
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 263 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRL 322
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIR 298
+DTK++ + ++ F VL + + +
Sbjct: 323 LDTKLMAS----------------TQPFKVLF-----------------ICYFINAEGFP 349
Query: 299 SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSW 358
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 350 SYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM- 407
Query: 359 TNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGP 418
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 408 ---RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG- 451
Query: 419 TSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 452 --NIQISWIDDTSAFVSLSQPEQV 473
>gi|115385711|ref|XP_001209402.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114187849|gb|EAU29549.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 582
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/361 (23%), Positives = 157/361 (43%), Gaps = 53/361 (14%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FL F ++ GV YLSRE+E + ++ E+ + + +++DT +
Sbjct: 156 VEFLLDCSFSLDSLYKNGVPYLSREEEAQVWT-ISQARENRPV---RTELDVKDT---DY 208
Query: 61 PDILFAERMKDRLSEWL--GGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
I F + ++ + EWL G R R + P N + + F K P ++LN F
Sbjct: 209 ESIAFLDAVRQLIDEWLASGDSKRPRASYLNIPPPSNPATA---SRFSKAMP-LTLNKF- 263
Query: 119 SHQLL---LIQLVVRKHFKDLAY----LRVSGENSCSQNVIVYIESESDKKMLMKEVKDE 171
H+ L LI+++ ++ A L+ + E +Q +I E+ + ++
Sbjct: 264 -HKSLVHRLIEIIEYDEEREKAVIEQRLKRTKERILAQRGFRWI-VEALVGGDLSDLHAR 321
Query: 172 QKIDAEMSIKASIGFR-----------HVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPL 220
D S+ A G R H++ L + ++VGHN F D+ ++Y F GPL
Sbjct: 322 LFTDRLESLSAQYGGRMPGQTVDEFSAHLLQRLKDSRPVLVGHNLFTDLIYLYRNFLGPL 381
Query: 221 PLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKST 280
P T EF V++ FP ++DTK + N + P+ +L +
Sbjct: 382 PETVAEFQRKVHELFPTVVDTKYMATHNC-----------------GSINPKSSLAEINE 424
Query: 281 HLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSEN 340
+ P+ +++ + S + V HEAGYD+ +T VF + + L + +++ +
Sbjct: 425 SMMKLPTPAIKIHPQHFKYS--ATKVDHEAGYDSMLTAQVFIKLSAQLHREMAGRTTQDG 482
Query: 341 L 341
+
Sbjct: 483 V 483
>gi|403274049|ref|XP_003928802.1| PREDICTED: poly(A)-specific ribonuclease PARN [Saimiri boliviensis
boliviensis]
Length = 464
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 43/288 (14%)
Query: 156 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSK 215
E E ++ K K++++++ ++GF VI +++ KL++GHN LD+ H +
Sbjct: 71 EEERKRREQQKHAKEQEELND------AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQ 124
Query: 216 FFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIAL 275
F+ PLP EF FP ++DTK++ + ++ F + +L
Sbjct: 125 FYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSL 168
Query: 276 GSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 334
L P +VE + S + S HEAGYDA++TG F ++LG F
Sbjct: 169 AELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLS 227
Query: 335 QSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 394
A ++ + N L+L ++++ N L +++H V
Sbjct: 228 PPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------V 272
Query: 395 IVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 273 LHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 316
>gi|302663558|ref|XP_003023421.1| CAF1 family ribonuclease, putative [Trichophyton verrucosum HKI
0517]
gi|291187415|gb|EFE42803.1| CAF1 family ribonuclease, putative [Trichophyton verrucosum HKI
0517]
Length = 425
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 193 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 252
L S ++VGHN F D+ + Y F G LP E+F ++N+ FP +IDTK + + +L+
Sbjct: 180 LRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDFQQAINELFPLVIDTKYMATTGGVLR 239
Query: 253 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVE-----VEVDDIRSSNWNSGVK 307
ST + S + P+ + S HL L K+ +E SS S
Sbjct: 240 DASSALSTLMENLGSRVVPKFGILFHSMHLLLLSPRKLTFCANGIETHPDHSSYTVSTPM 299
Query: 308 HEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVN 352
HEAGYD+ MT +F + L + +Q +EN + + H
Sbjct: 300 HEAGYDSLMTAQIFLKLAVQL-YETNEQGKAENTTQQKLVYGHAT 343
>gi|291397222|ref|XP_002715010.1| PREDICTED: poly(A)-specific ribonuclease (deadenylation nuclease)
[Oryctolagus cuniculus]
Length = 531
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 154/354 (43%), Gaps = 63/354 (17%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + +G+ Y++ EQE K +++ + W + +
Sbjct: 112 VQFLNQYGFNYNKFLKKGIPYMNEEQEKKIKQNILA-------GDWRVRSSLDKDQI--- 161
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + D ++ WL +EG +I+L G
Sbjct: 162 ------KVVIDEVTRWLDP----AEEGD----------------------SITLPGIAGF 189
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
Q +QLV+R+ ++ + Q V+V S + L D E +
Sbjct: 190 QAFEVQLVLRQALPNIWTAQRE------QGVVVKKVSRQHRWYLEHTSCDRASCWKEKIL 243
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +ID
Sbjct: 244 LSARGFSVFFQMLVRAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLID 303
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TK + + I ++ ++LS+ + VL + +K++ + + K E VD
Sbjct: 304 TKNV--TKDIWKELNFPRVSNLSEVYEVLNSNLN-PTKNSGPEIIHANKCEKYVD----- 355
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLL 354
+ HEA YDAF+ G V + +HL + Q++ S + A +++++L
Sbjct: 356 ---TKCPHEAAYDAFLCGSVLLKV-AHLLL---QRAHSNSPATEPSFPQYLDML 402
>gi|354481849|ref|XP_003503113.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Cricetulus griseus]
Length = 577
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 161/387 (41%), Gaps = 84/387 (21%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHL--- 57
+ FL +Y FD+N + G+ Y++ EQE K+IR++ L
Sbjct: 112 VQFLNQYGFDYNKFLKNGIPYMNEEQE----------------------KKIRESILRGN 149
Query: 58 FNIPDILFAERMK---DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISL 114
+ + L +++K D+++ WL +EG ++L
Sbjct: 150 WRVRSSLDKDQIKVVIDKVTRWLDL----AEEGDR----------------------MTL 183
Query: 115 NGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQK 173
G Q +Q+V+R+ ++ L+ G VIV S+ + L D+ +
Sbjct: 184 PGIAGFQAYEVQMVLRQALPNIWTVLKDEG-------VIVKKVSQPHRWYLENASCDQIR 236
Query: 174 IDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNK 233
E + ++ GF +L +K ++GHN +D+ H++ KF+ PLP + +EF +++
Sbjct: 237 CWREEIVLSARGFSVFFKMLVRAQKPLIGHNMMMDLLHLHEKFYKPLPESYDEFKQNIHN 296
Query: 234 YFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC----PQIALGSKSTHLALQPSVK 289
FP IIDTK + + I ++ ++LS+ + VL P + G + H +
Sbjct: 297 LFPVIIDTKNV--TKDIWKEMRFPRVSNLSEVYDVLSSDLNPTNSTGPEIIHAS------ 348
Query: 290 VEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEK--- 346
E E + HEAGYDAF+ G V + L S + L ++
Sbjct: 349 -ECE------KYAETKCPHEAGYDAFLCGSVLLKVAHLLLERVHDAGSVDELTFSQYLDV 401
Query: 347 LREHVNLLYLSWTNGEIINLSTGNRTS 373
L +VN + L INLS + S
Sbjct: 402 LEPYVNQVNLIRAGVPKINLSGPDYPS 428
>gi|290998593|ref|XP_002681865.1| poly(A)-specific ribonuclease [Naegleria gruberi]
gi|284095490|gb|EFC49121.1| poly(A)-specific ribonuclease [Naegleria gruberi]
Length = 707
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/364 (22%), Positives = 154/364 (42%), Gaps = 64/364 (17%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHL--- 57
+ FL + D N I +G+SY++ ++E+ ++V + ++ + + K R +
Sbjct: 222 LQFLVNNKMDINKVIGQGISYMNEDEEEAIRENVTRITKQKAASATNRRKSDRGDKIQVE 281
Query: 58 -FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 116
F E K R++EW + D+ + P ++ F +M ++
Sbjct: 282 NLKPEQREFLENCKSRVAEWFDN---SEDDDINLDPCNTFERKLLFQEFGEMITLTTIYA 338
Query: 117 FTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDA 176
+ +Q R SG ES+++ + +E+++
Sbjct: 339 NNRTAFIRVQ-------------RASG--------------ESEEEKMQREIRE------ 365
Query: 177 EMSIKASIGFRHVIDLLSSEKKL-IVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
++ IGF +I L K L +GHN LD+ HI KF PLP ++E+F + V + F
Sbjct: 366 --AVNRDIGFSRIIRELKKHKHLFFIGHNAMLDMMHIVHKFIQPLPESSEQFKTIVRENF 423
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVD 295
H+IDTK + + + + + TSL AF + L + +T + +
Sbjct: 424 EHVIDTKYICETYPQISSALGR-DTSLRTAF-----EYTLNNNNTDGPVFENF------- 470
Query: 296 DIRSSNWNSGVK---HEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVN 352
+ + S +K H A +DAFMTG VF + SH+ + + + +A ++E N
Sbjct: 471 ----TEFYSSIKDFDHVAAFDAFMTGYVFYR-ISHMIATNRNNKNFKGIADLTHIKEMTN 525
Query: 353 LLYL 356
++ +
Sbjct: 526 IINI 529
>gi|399217688|emb|CCF74575.1| unnamed protein product [Babesia microti strain RI]
Length = 587
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 107/466 (22%), Positives = 194/466 (41%), Gaps = 100/466 (21%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDT----H 56
++FL FDFN ++ G+ +L+ QE++ + S + +S K + T
Sbjct: 149 LNFLRDNNFDFNQWVNHGIGHLTPMQENEKKNSILSRINELEQLKQNSTKSVDKTPTSFD 208
Query: 57 LFNIPD---ILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAIS 113
L +IPD + A + ++ EW+ ND + E IS
Sbjct: 209 LSSIPDEKDRVVAVAVIKQVEEWIQ----------------NDDPKPLE---------IS 243
Query: 114 LNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQK 173
++ ++ Q LL+ ++ F + + E+ Q ++ S+ EV EQ
Sbjct: 244 MD--SAFQRLLMHTIIGHEFPTVFSHSIKRED---QRMLCVYRSQD-------EVYREQM 291
Query: 174 IDAEM---SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISS 230
++ ++ +G R ++D ++ K++VGHNCF DI HIY F+G LP + +EF
Sbjct: 292 NGLQLELDNLAEQVGIRTLLDCIAECNKIVVGHNCFYDILHIYQYFYGDLPESIDEFKRI 351
Query: 231 VNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSV-- 288
K F DTK + + L SS L L LG A++ S
Sbjct: 352 WIKKFAQTFDTKYISECHPTL------SSLQLPSTLKGLV-VYELGLFEYMCAVESSQKD 404
Query: 289 KVEVEVDDIRSSNWNSGV-------------------KHEAGYDAFMTGCVFAQACSHLG 329
K +++++ + ++ W V H+AGYD+ MT +F ++
Sbjct: 405 KTKLQINTLPNTKWIYPVCMRGLMDTVCHSVDDLEDKSHDAGYDSLMTCIIFILQSNY-- 462
Query: 330 IDFKQQSSSENLAH-NEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKI 388
I +Q S + L+ + + +N + L T +I L+ G+ T +
Sbjct: 463 ILREQNSQTTKLSSIGDTMSLALNRIRLVKTQPNMIYLN-GSETDTV-----------RH 510
Query: 389 LFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFV 434
+ C FPS+ K W+I + S V+ IS++ ++ET+ ++
Sbjct: 511 FYMC-----NFPSNWKKWEIMKAFSPVW-----ISIHWINETSCWI 546
>gi|281348205|gb|EFB23789.1| hypothetical protein PANDA_014878 [Ailuropoda melanoleuca]
Length = 429
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 140/329 (42%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y FD+N + G+ Y++ EQE K +KH T +W + +
Sbjct: 30 VQFLNQYGFDYNKFLKNGIPYMNEEQE-KKIKHNILT------GNWRVRSSLDKDQI--- 79
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + D ++ WL + +EG ++L G
Sbjct: 80 ------KVVIDEVTRWLD----SAEEGD----------------------WMTLPGIAGF 107
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ D+ LR Q +IV ++ + L D E
Sbjct: 108 QAFEVQLVLRQALPDIWTVLR-------DQGIIVKKVNKQHRWYLENTSCDRASCWKEKI 160
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +I
Sbjct: 161 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKLNIHNLFPVLI 220
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + S + S K E V+
Sbjct: 221 DTKNV--TRDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPEVIHAS-KCEKYVE---- 273
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 274 ----TKYPHEAAYDAFLCGSVLLKV-AHL 297
>gi|301779938|ref|XP_002925390.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Ailuropoda
melanoleuca]
Length = 526
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 140/329 (42%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y FD+N + G+ Y++ EQE K +KH T +W + +
Sbjct: 107 VQFLNQYGFDYNKFLKNGIPYMNEEQE-KKIKHNILT------GNWRVRSSLDKDQI--- 156
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + D ++ WL + +EG ++L G
Sbjct: 157 ------KVVIDEVTRWLD----SAEEGD----------------------WMTLPGIAGF 184
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ D+ LR Q +IV ++ + L D E
Sbjct: 185 QAFEVQLVLRQALPDIWTVLR-------DQGIIVKKVNKQHRWYLENTSCDRASCWKEKI 237
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +I
Sbjct: 238 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKLNIHNLFPVLI 297
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + S + S K E V+
Sbjct: 298 DTKNV--TRDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPEVIHAS-KCEKYVE---- 350
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 351 ----TKYPHEAAYDAFLCGSVLLKV-AHL 374
>gi|349605143|gb|AEQ00478.1| Poly(A)-specific ribonuclease PARN-like protein, partial [Equus
caballus]
Length = 376
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 113/261 (43%), Gaps = 37/261 (14%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP ++DTK
Sbjct: 6 AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK 65
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 301
++ + ++ F + +L L P +VE + S +
Sbjct: 66 LMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYD 109
Query: 302 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 361
S HEAGYDA++TG F ++LG F + A ++ + N L+L
Sbjct: 110 TASEQLHEAGYDAYITGLCFISMANYLGT-FLSPPKTHVSARSKLVEPFFNKLFLM---- 164
Query: 362 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 421
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 165 RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---N 209
Query: 422 ISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 210 IQISWIDDTSAFVSLSQPEQV 230
>gi|428182900|gb|EKX51759.1| hypothetical protein GUITHDRAFT_102366 [Guillardia theta CCMP2712]
Length = 654
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 137/324 (42%), Gaps = 62/324 (19%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
+ + Q DFN ++G+ Y E V + E + ++ R + D+
Sbjct: 221 IGQCQLDFNRWFYDGIPYTDALGEVYVRYDVMRQFGVEKSE----FRQSRPVAITREGDL 276
Query: 64 LFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLL 123
+ R+ D L W+ G+ G+E E +F S N F +L
Sbjct: 277 VLLNRLMDGLDAWMNGV--GEQAGNE------------EYMF------PSANSFI--RLA 314
Query: 124 LIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKAS 183
L Q V K+ K + R + C+ V+ + S D+ + + +I +++
Sbjct: 315 LQQQVAMKYPKLVVMTR---KEPCNPLVMRLVCSRGDESWRKRTTEKAHQI-----LQSR 366
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
+GFRH+ ++LSS KK +V HN D+ + S F LP T EF S V++ FP + DTK
Sbjct: 367 LGFRHIFNVLSSSKKPMVVHNGLYDLMFLISHFECRLPNTLMEFKSIVHRSFPQVYDTKY 426
Query: 244 LLNSNSILQQRMKKSSTSL-----SKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIR 298
L ++ +Q + + L S+ S C +++L S H
Sbjct: 427 L--AHVAFKQEDAQLTNLLDLYRRSRNASTAC-RVSLHSDFKH----------------- 466
Query: 299 SSNWNSGVKHEAGYDAFMTGCVFA 322
++S HE+G+DAF TGC+F
Sbjct: 467 ---YSSQKLHESGWDAFATGCIFG 487
>gi|403366643|gb|EJY83125.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Oxytricha trifallax]
Length = 554
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
IGF V++ + + KK +VGHN LDI +Y +F LPLT EFI + FP I DTK
Sbjct: 226 IGFSKVVEEMINAKKPLVGHNMMLDIMFLYQQFIDDLPLTLREFIVKFQEKFPAIYDTK- 284
Query: 244 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNW- 302
+ S + ++ + L S ST + + K +E D N+
Sbjct: 285 ---------------AISQNMGVNLFNNKTDLNSMSTQILQKQKFKSYLEFDYDIGHNFT 329
Query: 303 ---NSGVKHEAGYDAFMTGCVFAQACSHLGI 330
+ + HEAGYD+++TG VFA +L +
Sbjct: 330 KYQSKQMLHEAGYDSYLTGLVFASLIKYLEV 360
>gi|344252660|gb|EGW08764.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Cricetulus griseus]
Length = 364
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 148/345 (42%), Gaps = 94/345 (27%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHL--- 57
+ FL +Y FD+N + G+ Y++ EQE K++R++ L
Sbjct: 64 VQFLNQYGFDYNKFLKNGIPYMNEEQE----------------------KKLRESILRGN 101
Query: 58 FNIPDILFAERMK---DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISL 114
+ + L +++K D+++ WL +EG ++L
Sbjct: 102 WRVGSSLDKDQIKVVIDKVTRWLDL----AEEGDR----------------------MTL 135
Query: 115 NGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQK 173
G Q +Q+V+R+ D+ L+ G V+V S+ + L + D+ +
Sbjct: 136 PGIAGFQAYEVQMVLRQALPDIWTVLKDEG-------VVVKKVSQPHRWYLENDSCDQIR 188
Query: 174 IDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNK 233
+ + ++ GF I++L +K ++GHN +D+ H++ KFF PLP + +EF +++
Sbjct: 189 CWRQEILLSARGFSGFIEMLVRAQKPLIGHNMTMDLLHLHEKFFKPLPESYDEFKQNIHS 248
Query: 234 YFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLC----------PQIALGSKSTHLA 283
FP +IDTK + S I ++ +++LS+ + VL P+I GSK A
Sbjct: 249 LFPVVIDTKNV--SKDIWKELHFPQASNLSEVYDVLSSDLNPTNNSGPEIIHGSKCEKYA 306
Query: 284 LQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ H+AG DAF+ G + + +HL
Sbjct: 307 -------------------ENKYSHKAGNDAFLCGSILLK-VAHL 331
>gi|297679544|ref|XP_002817589.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Pongo abelii]
Length = 532
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 144/338 (42%), Gaps = 72/338 (21%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W +R +
Sbjct: 105 VQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH------DILTGNW----RVRSS----- 148
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
PD + + D ++ WL L + D ++L G T
Sbjct: 149 PDKDQIKVVIDEVTRWLD-LAKEGD-------------------------WMTLPGITGF 182
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ ++ L+ G V+V S+ + L D + E
Sbjct: 183 QAFEVQLVLRQALPNIWTVLKDEG-------VVVKKVSKQHRWYLQNTSCDRESCWKENI 235
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +I
Sbjct: 236 LLSARGFSAFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLI 295
Query: 240 DTK-----ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALG----SKSTHLALQPSVKV 290
DTK I N I +R+ ++ L + ++ ++ G + L L + V
Sbjct: 296 DTKSVTKDIWKVMNRIALRRVSRTMGRLYEPQPLVDGELGWGVFLMTAQFSLLLVENASV 355
Query: 291 EVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
E + HEA YDAF+ G V + +HL
Sbjct: 356 ETK------------CPHEAAYDAFLCGSVLLKV-AHL 380
>gi|21751916|dbj|BAC04070.1| unnamed protein product [Homo sapiens]
gi|119567997|gb|EAW47612.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1,
isoform CRA_a [Homo sapiens]
Length = 531
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 147/329 (44%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W +R +
Sbjct: 112 VQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH------DILTGNW----RVRSS----- 155
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
PD + + D ++ WL L + D ++L G T
Sbjct: 156 PDKDQIKVVIDEVTRWLE-LAKEGD-------------------------WMTLPGITGF 189
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ ++ L+ G V+V S+ + L D + E
Sbjct: 190 QAFEVQLVLRQALPNIWTVLKDEG-------VVVKKVSKQHRWYLQNTSCDRESCWKENI 242
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +I
Sbjct: 243 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLI 302
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + +K++ + + + E V+
Sbjct: 303 DTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN-PTKNSGPEIVHASRCEKYVE---- 355
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 356 ----TKCPHEAAYDAFLCGSVLLKV-AHL 379
>gi|451850236|gb|EMD63538.1| hypothetical protein COCSADRAFT_143653 [Cochliobolus sativus
ND90Pr]
Length = 620
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 142/376 (37%), Gaps = 105/376 (27%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPD 62
FL K FD GV YLSR++ DKA + E ++ LKE ++
Sbjct: 116 FLLKNGFDLGLPFANGVQYLSRQEADKAKQMACDRLEKKNPVPDLQLKE------GDVES 169
Query: 63 ILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQL 122
+ F R+++ +++W D + RP I + T +
Sbjct: 170 LDFMRRVREAINKWKTTTSSGLDITTHTG--------------LPERPKIPV--ITRFEK 213
Query: 123 LLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKA 182
L+ +VR F DL + G + C + + + E++ MK DE SI
Sbjct: 214 RLVHQLVRAEFPDLVTM---GRSECVRIIQLDPVREAENMQRMKNRVDE-------SILR 263
Query: 183 SIGFRHV----------------------------------------IDLLSSEKKLIVG 202
GFR + ++ L +++ ++VG
Sbjct: 264 QTGFRWIFEALVKGGNLSRTDLLYVARTTGMAPTADTDDTRTRFDKAMERLKTKQPVLVG 323
Query: 203 HNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-------LNSNSILQQRM 255
HN F DI ++Y F G LP T +F ++++ FP IIDTK L LN++ LQ
Sbjct: 324 HNMFTDIVYLYRTFVGELPDTLNDFQDAIHELFPKIIDTKYLATFAEGDLNASPTLQ--- 380
Query: 256 KKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAF 315
IA G L+ QP + D + + + HEAGYD+
Sbjct: 381 ----------------DIAQG-----LSSQPLPDIITHADHPKYQDIEAF--HEAGYDSL 417
Query: 316 MTGCVFAQACSHLGID 331
+T + + + LG++
Sbjct: 418 LTATIMIKLAARLGVE 433
>gi|114610057|ref|XP_001151114.1| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 isoform 3 [Pan troglodytes]
gi|397471750|ref|XP_003807445.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 2 [Pan paniscus]
Length = 531
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 147/329 (44%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W +R +
Sbjct: 112 VQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH------DILTGNW----RVRSS----- 155
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
PD + + D+++ WL L + D ++L G T
Sbjct: 156 PDKDQIKVVIDQVTRWLE-LAKEGD-------------------------WMTLPGITGF 189
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ ++ L+ G V+V S+ + L D + E
Sbjct: 190 QAFEVQLVLRQALPNIWTVLKDEG-------VVVKKVSKQHRWYLQNTSCDRESCWKENI 242
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + +F +++ FP +I
Sbjct: 243 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYNQFKQNIHSLFPVLI 302
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + +K++ + + + E V+
Sbjct: 303 DTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN-PTKNSGPEIVHASRCEKYVE---- 355
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 356 ----TKCPHEAAYDAFLCGSVLLKV-AHL 379
>gi|307167442|gb|EFN61018.1| Poly(A)-specific ribonuclease PARN [Camponotus floridanus]
Length = 571
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 125/276 (45%), Gaps = 42/276 (15%)
Query: 178 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 237
+ IK ++GF ++ + +K+IVGHN LD+ HI +FF PLP EF ++ FP
Sbjct: 247 LEIKQAVGFSSLLKKIVESEKIIVGHNMLLDLCHIVHQFFTPLPNDYIEFKILIHNLFPS 306
Query: 238 IIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDI 297
++DTK++ S Q+ K+ TS S L + + SKS P +VE +
Sbjct: 307 LLDTKVICQS-----QQFKEHVTS-----SNLNVLLDIMSKS------PFSIPDVEPVEG 350
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + ++ HEAGYDA++TG F ++LG ++ ++ L + L +N L ++
Sbjct: 351 YSYSVSTEKSHEAGYDAYITGLCFIALSNYLGT-LQKSKNATVLVDSPLLNPFLNKLPIA 409
Query: 358 -WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVY 416
+ +NL + N ++H V FP K DI + S
Sbjct: 410 RLKDFPYVNLVGKD-------PNPSRDH---------VFHITFPKEWKHTDISQLFSPFG 453
Query: 417 G--------PTSVISVYHVDETAVFVQFSRAEMVSK 444
G ++ I +Y D+ +V +Q + + K
Sbjct: 454 GGYISWLSDTSAYIGLYRRDQASVVMQALAKQTICK 489
>gi|343962531|dbj|BAK62853.1| poly(A)-specific ribonuclease [Pan troglodytes]
Length = 531
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 147/329 (44%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W +R +
Sbjct: 112 VQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH------DILTGNW----RVRSS----- 155
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
PD + + D+++ WL L + D ++L G T
Sbjct: 156 PDKDQIKVVIDQVTRWLE-LAKEGD-------------------------WMTLPGITGF 189
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ ++ L+ G V+V S+ + L D + E
Sbjct: 190 QAFEVQLVLRQALPNIWTVLKDEG-------VVVKKVSKQHRWYLQNTSCDRESCWKENI 242
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + +F +++ FP +I
Sbjct: 243 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYNQFKQNIHSLFPVLI 302
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + +K++ + + + E V+
Sbjct: 303 DTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN-PTKNSGPEIVHASRCEKYVE---- 355
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 356 ----TKCPHEAAYDAFLCGSVLLKV-AHL 379
>gi|27735155|ref|NP_775787.1| poly(A)-specific ribonuclease PARN-like domain-containing protein 1
precursor [Homo sapiens]
gi|160419239|sp|Q8NA58.2|PNDC1_HUMAN RecName: Full=Poly(A)-specific ribonuclease PARN-like
domain-containing protein 1; Flags: Precursor
gi|21757367|dbj|BAC05101.1| unnamed protein product [Homo sapiens]
gi|85567674|gb|AAI12247.1| Poly(A)-specific ribonuclease (PARN)-like domain containing 1 [Homo
sapiens]
gi|119567998|gb|EAW47613.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1,
isoform CRA_b [Homo sapiens]
gi|313883454|gb|ADR83213.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1
(PNLDC1) [synthetic construct]
Length = 520
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 147/329 (44%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W +R +
Sbjct: 101 VQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH------DILTGNW----RVRSS----- 144
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
PD + + D ++ WL L + D ++L G T
Sbjct: 145 PDKDQIKVVIDEVTRWLE-LAKEGD-------------------------WMTLPGITGF 178
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ ++ L+ G V+V S+ + L D + E
Sbjct: 179 QAFEVQLVLRQALPNIWTVLKDEG-------VVVKKVSKQHRWYLQNTSCDRESCWKENI 231
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +I
Sbjct: 232 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLI 291
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + +K++ + + + E V+
Sbjct: 292 DTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN-PTKNSGPEIVHASRCEKYVE---- 344
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 345 ----TKCPHEAAYDAFLCGSVLLKV-AHL 368
>gi|452843543|gb|EME45478.1| hypothetical protein DOTSEDRAFT_52745 [Dothistroma septosporum
NZE10]
Length = 585
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 93/388 (23%), Positives = 154/388 (39%), Gaps = 99/388 (25%)
Query: 2 DFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIP 61
+FL FD GV YLSR E K + + +D+ +S+ +I+
Sbjct: 114 EFLLGVGFDIGRPFRLGVPYLSR-AESKVAREKFAMRQDK-----NSMADIQ-IKPTETE 166
Query: 62 DILFAERMKDRLSEWLGGLLRNRDEGSEVQPSF-NDSKQQFETIFFKMRPAISLNGFTSH 120
+ F ER++ ++ W+ RN D P++ N + +ETI R A L+ F
Sbjct: 167 SLAFLERVRGDINTWVKS--RNMD-----TPAYLNIAPVGYETIHDGQRQAEELSRFEKR 219
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
L+ +VR F +L + G +I+ K + + +++ D E I
Sbjct: 220 ---LVHQLVRAEFPELVTVSKKG----------FIQIVRFNKEREERIAADRRRDLEERI 266
Query: 181 KASIGFRHVID-----------------------------------------LLSSEKKL 199
GFR +I+ +L K+
Sbjct: 267 GRQKGFRWIIEALHGSNISNLDLRECAKDSVTGEPVFADMDDYKAQFNRAQGMLRGNPKV 326
Query: 200 IVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSS 259
IVGHNCFLD+ +IY F G LP EEF ++K +P ++DTK + N
Sbjct: 327 IVGHNCFLDMVYIYRTFIGELPDNVEEFQRRLHKLWPVVVDTKYMTTHN----------- 375
Query: 260 TSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVD-DIRSSNWNS-GVKHEAGYDAFMT 317
C I+ S +A Q S + +D D + + +N+ HEAG+D+F+T
Sbjct: 376 ----------CGDISPISSLEQIAEQLSAQTTPILDTDKQHTKYNTMAAFHEAGFDSFLT 425
Query: 318 GCVFAQAC-------SHLGIDFKQQSSS 338
V + +++ +D K QS++
Sbjct: 426 AQVAVKLSAKLDCEGAYIDVDDKGQSAA 453
>gi|302497187|ref|XP_003010594.1| CAF1 family ribonuclease, putative [Arthroderma benhamiae CBS
112371]
gi|291174137|gb|EFE29954.1| CAF1 family ribonuclease, putative [Arthroderma benhamiae CBS
112371]
Length = 573
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 193 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 252
L S ++VGHN F D+ + Y F G LP E+F ++N+ FP +IDTK + + +L+
Sbjct: 301 LRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDFQQAINELFPLVIDTKYMATTGGVLR 360
Query: 253 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVE-----VEVDDIRSSNWNSGVK 307
ST + S + P+ + S HL L S + +E SS S
Sbjct: 361 DASSALSTLMENLGSRVVPKFGILFHSMHLLLPSSRNLTFCANGIETHPDHSSYTVSTPI 420
Query: 308 HEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENL 341
HEAGYD+ MT +F + L ++ SS E L
Sbjct: 421 HEAGYDSLMTAQIFLKLAVQL---YETSSSREAL 451
>gi|444722573|gb|ELW63261.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Tupaia chinensis]
Length = 721
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 143/329 (43%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K +KH T SW + +
Sbjct: 112 VQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IKHNLLT------GSWKVRSSLDKDQI--- 161
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + D ++ WL D+ E ++L G T
Sbjct: 162 ------KAVIDEVTRWL-------DQAEEGD-------------------WMTLPGITGF 189
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ ++ L+ G VIV S+ + L D + E
Sbjct: 190 QAFEVQLVLRQALPNVWTVLKDRG-------VIVKKVSKQHRWYLENTSCDRESCWKERI 242
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +I
Sbjct: 243 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHHLFPVLI 302
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + + ++ ++LS+ + VL + +K++ + S K E V
Sbjct: 303 DTKNV--TKDVWKELNFPRVSNLSEVYEVLSSDLN-PTKNSGPVIVHSSKCEKYV----- 354
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 355 ---ATKYPHEAAYDAFLCGSVLLKV-AHL 379
>gi|114610059|ref|XP_518838.2| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 isoform 4 [Pan troglodytes]
gi|397471748|ref|XP_003807444.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 1 [Pan paniscus]
gi|410307434|gb|JAA32317.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1 [Pan
troglodytes]
Length = 520
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 147/329 (44%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W +R +
Sbjct: 101 VQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH------DILTGNW----RVRSS----- 144
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
PD + + D+++ WL L + D ++L G T
Sbjct: 145 PDKDQIKVVIDQVTRWLE-LAKEGD-------------------------WMTLPGITGF 178
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ ++ L+ G V+V S+ + L D + E
Sbjct: 179 QAFEVQLVLRQALPNIWTVLKDEG-------VVVKKVSKQHRWYLQNTSCDRESCWKENI 231
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + +F +++ FP +I
Sbjct: 232 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYNQFKQNIHSLFPVLI 291
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + +K++ + + + E V+
Sbjct: 292 DTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN-PTKNSGPEIVHASRCEKYVE---- 344
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 345 ----TKCPHEAAYDAFLCGSVLLKV-AHL 368
>gi|390350398|ref|XP_785661.3| PREDICTED: poly(A)-specific ribonuclease PARN-like
[Strongylocentrotus purpuratus]
Length = 643
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 23/188 (12%)
Query: 144 ENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS-IKASIGFRHVIDLLSSEKKLIVG 202
E+ + ++V +E +KK L ++ K+ AE+ + + G V+ ++S K++VG
Sbjct: 245 EDKKGRFIVVRRVTEEEKKKLAQD-----KLQAELDEVDEASGICRVMKMISESGKVVVG 299
Query: 203 HNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSL 262
HN LD+ H+ +F GPLP T EF S V F ++DTK++ N
Sbjct: 300 HNMMLDVIHMMHQFTGPLPDTLLEFKSMVGCVFSRLLDTKVMAN---------------- 343
Query: 263 SKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK-HEAGYDAFMTGCVF 321
++ F L P L + +P + + + ++ + K HEA YDA++TG F
Sbjct: 344 TQPFKELFPMTGLNDLMSKCDEEPFRRPHIVIPPSGFVDYTANQKFHEAAYDAYVTGVCF 403
Query: 322 AQACSHLG 329
A +++G
Sbjct: 404 ATMANYIG 411
>gi|345305348|ref|XP_001505796.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Ornithorhynchus
anatinus]
Length = 392
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 113/269 (42%), Gaps = 37/269 (13%)
Query: 175 DAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKY 234
D + ++GF VI +++ KL++GHN LD+ H +F+ PLP EF
Sbjct: 15 DLREELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTIHQFYCPLPEDLNEFKEVTACV 74
Query: 235 FPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE- 293
FP ++DTK++ + ++ F + +L L P +VE
Sbjct: 75 FPRLLDTKLMAS----------------TQPFKEIINNTSLAELEKRLKATPFNPPKVES 118
Query: 294 VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNL 353
+ S + S HEAGYDA++TG F + LG F A ++ + N
Sbjct: 119 AEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLG-SFLSPPKIHVSARSKLIEPFFNK 177
Query: 354 LYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECIS 413
L+L I+++ N L +++H V+ FP K D+ + S
Sbjct: 178 LFLM----RIMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS 222
Query: 414 KVYGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I V +D+T+ FV S+ E V
Sbjct: 223 -AFG---NIQVSWIDDTSAFVSLSQPEQV 247
>gi|332020023|gb|EGI60474.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Acromyrmex echinatior]
Length = 607
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/391 (23%), Positives = 167/391 (42%), Gaps = 57/391 (14%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FL Y F+FN + G+SYL +Q DK L ++I++ LFN
Sbjct: 109 LEFLTMYGFNFNELAYNGISYL--DQTDKTLLE----------------QQIQENTLFNN 150
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + + +D ++ +++ + + ++I K P + F
Sbjct: 151 VEQSISYKEEDNF----------KNTVTQIFEWLKTASDEVDSIKVK-SPTPTFQYFMHK 199
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+L RK F ++ SG NVI I+ + + ++++ +E I +
Sbjct: 200 EL-------RKRFSNI--WTFSG-----NNVITVIKVLPESRQILEQ--EEGFILENTLL 243
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
++ +GF V + L + KK I+ HN FLD I+ +F+ PLP +F +++++ FP I D
Sbjct: 244 ESYVGFSKVFNFLITLKKPIIAHNAFLDFMFIHQQFYKPLPQKYIDFKNNIHQLFPTIYD 303
Query: 241 TKIL-LNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
TK L ILQ K SLS S + + P++++ D +
Sbjct: 304 TKFLSYELRKILQTPEKWKHNSLSGLMS----HFTKSNGKYVMPGSPAIELVTNSDKLND 359
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT 359
+ S H AG+DA+ G +F + +H+ F + + L N K H L+ +
Sbjct: 360 T-VPSKKYHTAGWDAYFAGYLFIR-MTHI---FATKQYGQGL--NFKEFTHTELMNSIKS 412
Query: 360 NGEIINLSTGNRTSESLASNKRKNHYPKILF 390
+N+ GN + + K+ PK L+
Sbjct: 413 FANCVNIVRGNTSYLRFDGPEPKSTRPKWLY 443
>gi|395860984|ref|XP_003802777.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Otolemur
garnettii]
Length = 573
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 112/261 (42%), Gaps = 37/261 (14%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GF VI +++ KL++GHN LD+ H +F+ PLP +F FP ++DTK
Sbjct: 202 AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYYPLPADLTDFKKMTTCVFPRLLDTK 261
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 301
++ + ++ F + +L L P +VE + S +
Sbjct: 262 LMAS----------------TQPFKDIINNTSLAELEKRLKETPFCSPKVESAEGFPSYD 305
Query: 302 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 361
S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 306 TASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPEIHVSARSKLIEPFFNKLFLM---- 360
Query: 362 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 421
++++ N L +++H V+ FP KA ++ +++
Sbjct: 361 RLMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKASNLY----RLFSAFGN 405
Query: 422 ISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 406 IQISWIDDTSAFVSLSQPEQV 426
>gi|395860986|ref|XP_003802778.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Otolemur
garnettii]
Length = 588
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 112/261 (42%), Gaps = 37/261 (14%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GF VI +++ KL++GHN LD+ H +F+ PLP +F FP ++DTK
Sbjct: 217 AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYYPLPADLTDFKKMTTCVFPRLLDTK 276
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 301
++ + ++ F + +L L P +VE + S +
Sbjct: 277 LMAS----------------TQPFKDIINNTSLAELEKRLKETPFCSPKVESAEGFPSYD 320
Query: 302 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 361
S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 321 TASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPEIHVSARSKLIEPFFNKLFLM---- 375
Query: 362 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 421
++++ N L +++H V+ FP KA ++ +++
Sbjct: 376 RLMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKASNLY----RLFSAFGN 420
Query: 422 ISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 421 IQISWIDDTSAFVSLSQPEQV 441
>gi|74141205|dbj|BAE35913.1| unnamed protein product [Mus musculus]
Length = 624
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 104/446 (23%), Positives = 182/446 (40%), Gaps = 78/446 (17%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E E++ L+ E D S L
Sbjct: 113 IDFLASQGFDFNKVFCSGIPYLNQE-EERQLR--------EQFDEKRSQANGAGA-LAKC 162
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGS-EVQPSFNDSKQQFETIFFKMRPAISLNGF 117
P + ++ K D++ E + L++ ++ S E+ P GF
Sbjct: 163 PVTIPEDQKKFIDQVVEKIEDFLQSEEKRSLELDPC---------------------TGF 201
Query: 118 TSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE 177
+ L+ Q + K+ K + + + VI ++ E K+ ++ EQ+
Sbjct: 202 --QRKLIYQTLSWKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQE---- 255
Query: 178 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 237
+ ++GF VI +++ KL+VGHN LD+ H +F+ PLP EF FP
Sbjct: 256 -ELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPR 314
Query: 238 IIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDD 296
++DTK++ + ++ F + +L L P +VE +
Sbjct: 315 LLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEG 358
Query: 297 IRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYL 356
S + S HEAGYDA++TG F ++LG + A ++ + N L+L
Sbjct: 359 FPSYDTASEQLHEAGYDAYITGLCFISMANYLGSLLSPPKMCVS-ARSKLIEPFFNKLFL 417
Query: 357 SWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVY 416
++++ N L +++H V+ FP K D+ + S +
Sbjct: 418 M----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AF 461
Query: 417 GPTSVISVYHVDETAVFVQFSRAEMV 442
G I + +D+T+ FV S+ E V
Sbjct: 462 G---NIQISWIDDTSAFVSLSQPEQV 484
>gi|119482273|ref|XP_001261165.1| CAF1 family ribonuclease, putative [Neosartorya fischeri NRRL 181]
gi|119409319|gb|EAW19268.1| CAF1 family ribonuclease, putative [Neosartorya fischeri NRRL 181]
Length = 581
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/379 (22%), Positives = 165/379 (43%), Gaps = 61/379 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FL + +F ++ + +GV YLSRE+E +A+ + E + H+ ++++T ++
Sbjct: 111 IEFLLENKFSIDSILKQGVQYLSREEEKQAIANA---IERRDRVATHTSIDVKETEHESL 167
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS- 119
+ R+ D +WL L R+E + P + K P+ +LN F
Sbjct: 168 AFLKAVRRLVD---DWLA-LGATREEYLNIPPPTRLGVSRSS----KSLPS-ALNRFQKR 218
Query: 120 --HQLLLIQL-----VVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVK--- 169
HQL+ ++ + R F + E S + + + + K+ + V
Sbjct: 219 LVHQLIEVEYPSLVTISRPDFIQIIDYNEERERSVREQRVTRVRERTWKQTGFRWVAEAL 278
Query: 170 ---DEQKIDAE-----MSIKASIGFRHVIDLLSSE--------KKLIVGHNCFLDIAHIY 213
D +D+ M+ A++ ++ ++ S + + ++VGHN F D+ +
Sbjct: 279 AGGDLTNLDSGYFIGIMASSAAVEPKYPLNEFSDKLKQRLKEHRPVLVGHNLFSDLIYFC 338
Query: 214 SKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQI 273
FFGPLP EEF S ++ FP ++DTK + N + P+
Sbjct: 339 RCFFGPLPSKVEEFQSMAHELFPVLMDTKYMATHNC-----------------GSINPRS 381
Query: 274 ALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL---GI 330
+L + +LA + K+ + S ++HEAGYD+ +T VF + + L G+
Sbjct: 382 SLSELNENLAKKAFPKISIHPQ--HSKYTTQKIEHEAGYDSLLTAQVFIRLSAQLREGGV 439
Query: 331 DFKQQSSSENLAHNEKLRE 349
+ QQ S+++ L++
Sbjct: 440 ELPQQKSTKDAQDTSNLQQ 458
>gi|148664946|gb|EDK97362.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_a [Mus musculus]
Length = 563
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 37/261 (14%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GF VI +++ KL+VGHN LD+ H +F+ PLP EF FP ++DTK
Sbjct: 199 AVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK 258
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 301
++ + ++ F + +L L P +VE + S +
Sbjct: 259 LMAS----------------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYD 302
Query: 302 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 361
S HEAGYDA++TG F ++LG + A ++ + N L+L
Sbjct: 303 TASEQLHEAGYDAYITGLCFISMANYLGSLLSPPKMCVS-ARSKLIEPFFNKLFLM---- 357
Query: 362 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 421
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 358 RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---N 402
Query: 422 ISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 403 IQISWIDDTSAFVSLSQPEQV 423
>gi|121717008|ref|XP_001275977.1| CAF1 family ribonuclease, putative [Aspergillus clavatus NRRL 1]
gi|119404134|gb|EAW14551.1| CAF1 family ribonuclease, putative [Aspergillus clavatus NRRL 1]
Length = 578
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 166/388 (42%), Gaps = 90/388 (23%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FL + +F +A GV YLSRE+E+ A+ E + H+L ++++T L ++
Sbjct: 111 VEFLLENKFSMDAVFKNGVCYLSREEEELAMA---KAIERRDRVATHTLIDVKETELESL 167
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ A R+ D +WL + RD + P Q K P+ +LN F
Sbjct: 168 AFLQAARRLVD---DWLA-IRTTRDSYLNIPPPTRIGHLQSS----KSLPS-TLNRF--- 215
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID-AEMS 179
Q L+ ++ + L + G I I+ + +++ ++E Q+++ +
Sbjct: 216 QKRLVHQLIEVEYPSLVTISNPG-------FIQIIDYDEERERSLRE----QRLNRVQER 264
Query: 180 IKASIGFRHVIDLLSS---------------------------------------EKKLI 200
I GFR + + L+ E + +
Sbjct: 265 IWKQTGFRWIAEALAGGDLSNLDTSFFIGIMSNSAAVKPIYSLREFSEKLRERLQEHRPV 324
Query: 201 VGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSST 260
+GHN F D+ + Y FFGPLP E+F S++++ FP ++DTK + N
Sbjct: 325 LGHNIFSDLIYFYRCFFGPLPDKVEDFQSTMHELFPVLMDTKYMATHNC----------- 373
Query: 261 SLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNS-GVKHEAGYDAFMTGC 319
+ P+ +L + L+ + + K+E+ + S +N+ ++HEAGYD+ ++
Sbjct: 374 ------GSINPRSSLPEINDSLSKRATPKIEIHS---QYSKYNTRKIEHEAGYDSLLSAQ 424
Query: 320 VFAQACSHL--GIDFKQQSSS-ENLAHN 344
+F + + L G + +SSS +L H
Sbjct: 425 IFIRLSAQLRDGRESPPESSSFADLPHQ 452
>gi|60390578|sp|Q8VDG3.1|PARN_MOUSE RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease
gi|18256918|gb|AAH21899.1| Parn protein [Mus musculus]
Length = 624
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 37/261 (14%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GF VI +++ KL+VGHN LD+ H +F+ PLP EF FP ++DTK
Sbjct: 260 AVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK 319
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 301
++ + ++ F + +L L P +VE + S +
Sbjct: 320 LMAS----------------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYD 363
Query: 302 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 361
S HEAGYDA++TG F ++LG + A ++ + N L+L
Sbjct: 364 TASEQLHEAGYDAYITGLCFISMANYLGSLLSPPKMCVS-ARSKLIEPFFNKLFLM---- 418
Query: 362 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 421
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 419 RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---N 463
Query: 422 ISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 464 IQISWIDDTSAFVSLSQPEQV 484
>gi|270013255|gb|EFA09703.1| hypothetical protein TcasGA2_TC011836 [Tribolium castaneum]
Length = 535
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 137/330 (41%), Gaps = 67/330 (20%)
Query: 1 MDFLAKYQFDFNACIHEGVSYL-SREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFN 59
+ FL Y+FDFN + GV +L S++ D LK + E+ H L E H
Sbjct: 110 LSFLTMYKFDFNKFAYSGVPFLNSKDARDLRLKLKSGDLVGENCTLRHELDEALKAH--- 166
Query: 60 IPDILFAERMKDRLSEW-----LGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISL 114
P I S+W +G L E+ +N +E ++F
Sbjct: 167 TPVI----------SKWYNSCKIGDFL-------EIPDVYNRFGPFYELLYF-------- 201
Query: 115 NGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKI 174
+ +RK FK+L +G C + V +E+D L K + I
Sbjct: 202 ----------LHKHLRKRFKNLWTYDRNGV-FCVKKV-----TEADFTELEKRCSLDDAI 245
Query: 175 DAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKY 234
+++ GF+HV D L++ KK IVGHN D+ + + F LP + ++ + ++
Sbjct: 246 LDDLT-----GFKHVFDTLTALKKPIVGHNVLQDLMIMINNFENALPESYLQYKALAHQL 300
Query: 235 FPHIIDTK-ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE 293
FP I DTK I + + + TSLS F G HLA+ S +E
Sbjct: 301 FPTIFDTKTIYYELRATIPREKLPDDTSLSALFDYF-----RGGLGRHLAVD-STAIECN 354
Query: 294 VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQ 323
+D + ++ HEAG+D+F G +F +
Sbjct: 355 IDQGKFGSY-----HEAGWDSFCAGYIFLR 379
>gi|21311877|ref|NP_083037.1| poly(A)-specific ribonuclease PARN [Mus musculus]
gi|12835834|dbj|BAB23382.1| unnamed protein product [Mus musculus]
gi|26337129|dbj|BAC32249.1| unnamed protein product [Mus musculus]
Length = 624
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 37/261 (14%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GF VI +++ KL+VGHN LD+ H +F+ PLP EF FP ++DTK
Sbjct: 260 AVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK 319
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 301
++ + ++ F + +L L P +VE + S +
Sbjct: 320 LMAS----------------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYD 363
Query: 302 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 361
S HEAGYDA++TG F ++LG + A ++ + N L+L
Sbjct: 364 TASEQLHEAGYDAYITGLCFISMANYLGSLLSPPKMCVS-ARSKLIEPFFNKLFLM---- 418
Query: 362 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 421
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 419 RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---N 463
Query: 422 ISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 464 IQISWIDDTSAFVSLSQPEQV 484
>gi|91090816|ref|XP_971302.1| PREDICTED: similar to Poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Tribolium castaneum]
Length = 510
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 137/330 (41%), Gaps = 67/330 (20%)
Query: 1 MDFLAKYQFDFNACIHEGVSYL-SREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFN 59
+ FL Y+FDFN + GV +L S++ D LK + E+ H L E H
Sbjct: 114 LSFLTMYKFDFNKFAYSGVPFLNSKDARDLRLKLKSGDLVGENCTLRHELDEALKAH--- 170
Query: 60 IPDILFAERMKDRLSEW-----LGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISL 114
P I S+W +G L E+ +N +E ++F
Sbjct: 171 TPVI----------SKWYNSCKIGDFL-------EIPDVYNRFGPFYELLYF-------- 205
Query: 115 NGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKI 174
+ +RK FK+L +G C + V +E+D L K + I
Sbjct: 206 ----------LHKHLRKRFKNLWTYDRNGV-FCVKKV-----TEADFTELEKRCSLDDAI 249
Query: 175 DAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKY 234
+++ GF+HV D L++ KK IVGHN D+ + + F LP + ++ + ++
Sbjct: 250 LDDLT-----GFKHVFDTLTALKKPIVGHNVLQDLMIMINNFENALPESYLQYKALAHQL 304
Query: 235 FPHIIDTK-ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE 293
FP I DTK I + + + TSLS F G HLA+ S +E
Sbjct: 305 FPTIFDTKTIYYELRATIPREKLPDDTSLSALFDYF-----RGGLGRHLAVD-STAIECN 358
Query: 294 VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQ 323
+D + ++ HEAG+D+F G +F +
Sbjct: 359 IDQGKFGSY-----HEAGWDSFCAGYIFLR 383
>gi|71002704|ref|XP_756033.1| CAF1 family ribonuclease [Aspergillus fumigatus Af293]
gi|66853671|gb|EAL93995.1| CAF1 family ribonuclease, putative [Aspergillus fumigatus Af293]
gi|159130086|gb|EDP55200.1| CAF1 family ribonuclease, putative [Aspergillus fumigatus A1163]
Length = 573
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 162/380 (42%), Gaps = 63/380 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FL + +F ++ + GV YLSRE+E +A + + E + H+L ++++T ++
Sbjct: 85 IEFLLENKFSIDSILKHGVQYLSREEEKRA---IANAIERRDRVATHTLIDVKETEHESL 141
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS- 119
F + ++ + +WL L R+E + P Q K P+ +LN F
Sbjct: 142 ---AFLKAVRRVVDDWLA-LGATREEYLNIPPPTRLGVSQSS----KSLPS-ALNRFQKR 192
Query: 120 --HQLLLIQL-----VVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQ 172
HQL+ ++ + R F + E S + + I+ + K+ + V +
Sbjct: 193 LVHQLIEVEYPSLVAISRPDFIQIIDYNEERERSVREQRVKKIQERTWKQTGFRWVAEAL 252
Query: 173 K-----------IDAEMSIKASIGFRHVIDLLSSE--------KKLIVGHNCFLDIAHIY 213
M+ A++ ++ ++ S + + ++VGHN F D+ +
Sbjct: 253 AGGDLTNLHSGYFIGIMASSAAVEPKYPLNEFSDKLKQRLKEHRPVLVGHNIFSDLIYFC 312
Query: 214 SKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSN----------SILQQRMKKSSTSLS 263
FFGPLP EEF S ++ FP ++DTK + N S L + + K +
Sbjct: 313 RCFFGPLPSKVEEFQSMAHELFPVLMDTKYMATHNCGSINPRSSLSELNENLAKKAIPKI 372
Query: 264 KAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQ 323
A L Q L +K T + P S + HEAGYD+ +T VF +
Sbjct: 373 SAHDFLDRQFELMAKKT-TGIHPQ----------HSKYTTQKIDHEAGYDSLLTAQVFIR 421
Query: 324 ACSHL---GIDFKQQSSSEN 340
+ L G++ QQ S+++
Sbjct: 422 LSAQLREGGVEPLQQKSTKD 441
>gi|453085288|gb|EMF13331.1| CAF1-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 563
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 23/145 (15%)
Query: 186 FRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILL 245
F + ++ +++VGHNCFLD+ +IY F G LP T EEF ++K FP I+DTK +
Sbjct: 310 FNYTQAIMRGNPRILVGHNCFLDLVYIYRTFIGALPDTVEEFQQKLHKLFPVIVDTKYMS 369
Query: 246 NSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPS--VKVEVEVDDIRSSNWN 303
N C I+ S +A Q S +E D N
Sbjct: 370 THN---------------------CGDISPASSLEQIAEQLSDLETPPLETDPDHDKYEN 408
Query: 304 SGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEAGYDA++T V + + L
Sbjct: 409 TEAFHEAGYDAYLTAQVAVRLSAKL 433
>gi|148664948|gb|EDK97364.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_c [Mus musculus]
Length = 672
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 37/261 (14%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GF VI +++ KL+VGHN LD+ H +F+ PLP EF FP ++DTK
Sbjct: 308 AVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK 367
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 301
++ + ++ F + +L L P +VE + S +
Sbjct: 368 LMAS----------------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYD 411
Query: 302 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 361
S HEAGYDA++TG F ++LG + A ++ + N L+L
Sbjct: 412 TASEQLHEAGYDAYITGLCFISMANYLGSLLSPPKMCVS-ARSKLIEPFFNKLFLM---- 466
Query: 362 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 421
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 467 RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---N 511
Query: 422 ISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 512 IQISWIDDTSAFVSLSQPEQV 532
>gi|334324288|ref|XP_001381461.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Monodelphis domestica]
Length = 615
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 139/330 (42%), Gaps = 68/330 (20%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPD 62
FL +Y FD+N + G+ Y++ EQE K +D +W ++R T
Sbjct: 114 FLNQYGFDYNKFLKNGIPYMNEEQEKK-------IKQDLLTGNW----KVRST------- 155
Query: 63 ILFAERMK---DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS 119
L ++MK D ++ WL EG ++L T
Sbjct: 156 -LDKDQMKVVIDEVTRWL----EMAQEGD----------------------WMTLPDITG 188
Query: 120 HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ + L + V+V S + L +D E
Sbjct: 189 FQAFEVQLVLRQALPTVWTLMKD------KGVLVKKVSRQYRWCLENSSRDHDDCRREKI 242
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L KK +VGHN +D+ H++ KF+ PLP + E+F +++ FP +I
Sbjct: 243 LLSARGFAVFFQMLVKAKKPLVGHNMMMDLLHLHEKFYRPLPESYEQFKLNIHGLFPVLI 302
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVE-VEVDDIR 298
DTK + + I ++ +++L + + VL + S + + S ++ VE
Sbjct: 303 DTKNV--TKEIWKELSFPRASNLLEVYEVLNSDLNPTKNSCPVIIHASECIKYVE----- 355
Query: 299 SSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 356 -----TKYPHEAAYDAFLCGSVLLKV-AHL 379
>gi|395535236|ref|XP_003769636.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Sarcophilus harrisii]
Length = 533
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 139/330 (42%), Gaps = 68/330 (20%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPD 62
FL +Y FD+N + G+ Y++ EQE K +D +W ++R T
Sbjct: 114 FLNQYGFDYNKFLKNGIPYMNEEQEKK-------IKQDLLTGNW----KVRST------- 155
Query: 63 ILFAERMK---DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS 119
L ++MK D ++ WL EG ++L T
Sbjct: 156 -LDKDQMKVVIDEVTRWL----EMAQEGD----------------------WMTLPDITG 188
Query: 120 HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ + L + V+V S + L +D E
Sbjct: 189 FQAFEVQLVLRQALPTVWTLMKD------RGVLVKKVSRQYRWCLENSSRDHDDCRREKI 242
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L KK +VGHN +D+ H++ KF+ PLP + E+F +++ FP +I
Sbjct: 243 LLSARGFAVFFQMLVKAKKPLVGHNMMMDLLHLHEKFYRPLPESYEQFKLNIHSLFPVLI 302
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVE-VEVDDIR 298
DTK + + I ++ +++L + + VL + S + + S ++ VE
Sbjct: 303 DTKNV--TKEIWKELSFPRASNLLEVYEVLNSDLNPTKNSCPVIIHASECIKYVE----- 355
Query: 299 SSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 356 -----TKYPHEAAYDAFLCGSVLLKV-AHL 379
>gi|145503682|ref|XP_001437815.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404972|emb|CAK70418.1| unnamed protein product [Paramecium tetraurelia]
Length = 516
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 33/238 (13%)
Query: 166 KEVKDE--QKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLT 223
K+ KD+ QK A+ + GF + + + + KK +VGHNCF D+ YS F P++
Sbjct: 228 KQAKDDERQKFKAD-RFQTKTGFYQIWECILNSKKYLVGHNCFADVMFCYSHFVQCPPIS 286
Query: 224 AEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLA 283
EEF + + +P I DTK ++ S L++ K TS S +A KS
Sbjct: 287 WEEFKEDIARNWPPIYDTKYIIQSAQPLEKIRGKLETSTS------IENLAEFIKSNMNY 340
Query: 284 LQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQ--SSSENL 341
+Q V++E + H AG+DA+MTG +F +L DF QQ + +N
Sbjct: 341 IQIDVELE------------QNLYHTAGFDAYMTGFIFI----NLTKDFTQQELQNQKNK 384
Query: 342 AHNEKLREHVNL-----LYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIV 394
+ K +NL + L+ I L +R + + N+R+ + K F+ IV
Sbjct: 385 LNQFKSNYSINLNSAEDIKLNQKYVIYIKLPEEDRRNLQIQKNQRQ-QFQKSAFDNIV 441
>gi|225698027|pdb|3D45|A Chain A, Crystal Structure Of Mouse Parn In Complex With M7gpppg
gi|225698028|pdb|3D45|B Chain B, Crystal Structure Of Mouse Parn In Complex With M7gpppg
Length = 507
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 37/261 (14%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GF VI +++ KL+VGHN LD+ H +F+ PLP EF FP ++DTK
Sbjct: 262 AVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK 321
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 301
++ + ++ F + +L L P +VE + S +
Sbjct: 322 LMAS----------------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYD 365
Query: 302 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 361
S HEAGYDA++TG F ++LG + A ++ + N L+L
Sbjct: 366 TASEQLHEAGYDAYITGLCFISMANYLGSLLSPPKMCVS-ARSKLIEPFFNKLFLM---- 420
Query: 362 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 421
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 421 RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---N 465
Query: 422 ISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 466 IQISWIDDTSAFVSLSQPEQV 486
>gi|391342764|ref|XP_003745685.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Metaseiulus
occidentalis]
Length = 747
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 148/349 (42%), Gaps = 73/349 (20%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQED--------KALKHVNSTYEDE----------- 41
+ FL + FD N C+ EGV +L + D + ++ + S +E E
Sbjct: 222 LSFLVDHGFDLNRCVREGVPFLRPAELDDYQERIKRRHIRELASLFEQEQAGRPVKGFNT 281
Query: 42 SLDSWHSLKEIRDTHLFNIPDI-LFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQ 100
S D+ +S D L P + ++ E + +S+W+ G + ++D S + P+ ND
Sbjct: 282 SADALNS-SLTSDNFLDMDPAVRIYLEGVMPLVSKWMSGKMPDQD--SVLLPACND---- 334
Query: 101 FETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLR--VSGENSCSQNVIVYIE-S 157
F +M + + K F D + V +N Q +I+ S
Sbjct: 335 ----FIRM---------------TVYRQIEKKFPDDKFQMEAVRADNGADQRGSKHIKIS 375
Query: 158 ESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFF 217
SD M + ++ D +++ S G V+ L + +K +VGHN DI H+ +F
Sbjct: 376 RSD--MSPHQRMSQRHRDEMEALRDSFGVGSVLKTLVTSQKPVVGHNSLRDILHVIHQFV 433
Query: 218 GPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGS 277
PLP EF + FP + DTK + + +I K+S S+ V QI
Sbjct: 434 APLPEDFGEFQLLCRELFPVLFDTKQMSVTGTI------KASIRGSRLVDVFN-QI---- 482
Query: 278 KSTHLALQPSVKVEVE----VDDIRSSNWNSGVKHEAGYDAFMTGCVFA 322
K+ H P K+ E DD+ +HEAG+DA++TG +FA
Sbjct: 483 KNQHDKAFPIPKIHSEPGFAYDDMTR-------EHEAGFDAWLTGYIFA 524
>gi|395839184|ref|XP_003792479.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Otolemur garnettii]
Length = 535
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 143/334 (42%), Gaps = 60/334 (17%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y FD+N + G+ Y++ EQE K +KH + +W + +
Sbjct: 112 VQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKH------NILCGNWRVRSALDKDQI--- 161
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + D ++ WL + +EG ++L G
Sbjct: 162 ------KVVIDEVTRWL----QLAEEGD----------------------WLTLPGIAGF 189
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
Q +QLV+R+ ++ ++ + V+V S+ + L D E +
Sbjct: 190 QAFEVQLVLRQALPNIWTVQRE------EGVVVKKVSKQHRWYLENTSCDRASCWREKIL 243
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP IID
Sbjct: 244 LSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVIID 303
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TK + + I ++ ++LS+ + VL + +K++ + S E V
Sbjct: 304 TKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLN-PTKNSGPVIVHSNSCEKYV------ 354
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQ 334
HEA YDAF+ G V + +HL ++ Q
Sbjct: 355 --QMKCPHEAAYDAFLCGSVLLKV-AHLLLERMQ 385
>gi|313234528|emb|CBY10485.1| unnamed protein product [Oikopleura dioica]
Length = 442
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 22/232 (9%)
Query: 111 AISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIES-ESDKKMLMKEVK 169
+++L S+ LI + ++ F +SG N ++ V+ +++ ++++++ + EV
Sbjct: 71 SLNLPPCNSYIRRLIYMTLKPEFAGKTQF-ISGRNENNEPVVTILKTIKTEEEVKLAEVD 129
Query: 170 DEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFF-GPLPLTAEEFI 228
E E ++K +GF H++ ++S K +V H LD+ FF LP T EEF
Sbjct: 130 AE-----EEAMKEKLGFLHILRVISVSKTPLVFHAGELDLYLTMKHFFCDELPETLEEFK 184
Query: 229 SSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ-IALGSKSTHLALQPS 287
S FP I DT +L++ N L+ + + SL + F + Q AL + + H+A
Sbjct: 185 SITTATFPQIFDT-LLMSRNEPLKSNFPEGN-SLGEIFKKVQDQPFALNAANIHIA---- 238
Query: 288 VKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSE 339
D R G HEAGYDA+MTG F +L + K ++ ++
Sbjct: 239 -------DGYRDYKAFGGQVHEAGYDAWMTGVAFIHMMGYLNLVSKTKTEAK 283
>gi|451993381|gb|EMD85855.1| hypothetical protein COCHEDRAFT_1187827 [Cochliobolus
heterostrophus C5]
gi|452000264|gb|EMD92725.1| hypothetical protein COCHEDRAFT_1172140 [Cochliobolus
heterostrophus C5]
Length = 620
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/378 (22%), Positives = 141/378 (37%), Gaps = 109/378 (28%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHL--FNI 60
FL K FD GV YLSR++ +KA + + D + D HL ++
Sbjct: 116 FLLKNGFDLGLPFANGVQYLSRQEAEKARQM--------ACDRLEKKNPVPDLHLKEGDV 167
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ F R+++ +++W D + RP + + T
Sbjct: 168 ESLDFMRRVREAINKWKTTTSSGLDITTHTG--------------LPDRPKLPV--ITRF 211
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+ L+ +VR F DL + G + C + + + E++ MK DE SI
Sbjct: 212 EKRLVHQLVRAEFPDLVTM---GRSECVRIIHLDPVREAENMQRMKNRVDE-------SI 261
Query: 181 KASIGFRHV----------------------------------------IDLLSSEKKLI 200
GFR + ++ L + + ++
Sbjct: 262 LRQTGFRWIFEALVKGGNLSRTDLLFVARTTGMAPTADTDDTRTCFDRAMERLKTRQPVL 321
Query: 201 VGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-------LNSNSILQQ 253
VGHN F DI ++Y F G LP T ++F +++ FP IIDTK L LN++ LQ
Sbjct: 322 VGHNMFTDIVYLYRTFVGELPDTLDDFQDVIHELFPKIIDTKYLATFAEGDLNASPTLQ- 380
Query: 254 RMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYD 313
IA G L+ QP + D + + + HEAGYD
Sbjct: 381 ------------------DIAQG-----LSSQPLPDIITHADHPKYQDIEAF--HEAGYD 415
Query: 314 AFMTGCVFAQACSHLGID 331
+ +T + + + LG++
Sbjct: 416 SLLTATIMIKLAARLGVE 433
>gi|148664947|gb|EDK97363.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_b [Mus musculus]
Length = 426
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 37/261 (14%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GF VI +++ KL+VGHN LD+ H +F+ PLP EF FP ++DTK
Sbjct: 76 AVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK 135
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 301
++ + ++ F + +L L P +VE + S +
Sbjct: 136 LMAS----------------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYD 179
Query: 302 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 361
S HEAGYDA++TG F ++LG + A ++ + N L+L
Sbjct: 180 TASEQLHEAGYDAYITGLCFISMANYLGSLLSPPKMCVS-ARSKLIEPFFNKLFLM---- 234
Query: 362 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 421
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 235 RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---N 279
Query: 422 ISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 280 IQISWIDDTSAFVSLSQPEQV 300
>gi|346464857|gb|AEO32273.1| hypothetical protein [Amblyomma maculatum]
Length = 498
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 149/383 (38%), Gaps = 98/383 (25%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFN- 59
++FL + FDFN C + GV Y +R S + D +L N
Sbjct: 110 VEFLCRNGFDFNKCFYGGVPYANR-----------------------SFRRALDAYLLNE 146
Query: 60 ----IPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 115
P + ++ D + WL +R +GS +D+ +++L+
Sbjct: 147 QYLEKPGL---SKLYDSVRHWLNN--NDRSKGS------SDN-------------SLTLS 182
Query: 116 GFTSHQLLLIQLVVRKHFKDLAY------LRVSGENSCSQNVIVYIESESDKKMLMKEVK 169
+ ++ + +R F L + LRV+ +C+ +
Sbjct: 183 PHDDLSIPVLMVDLRTRFPGLEFDVKPEGLRVTLPPNCAPTKVA--------------TD 228
Query: 170 DEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFIS 229
+AE+ + A GF + L S K IVGHN LD+ +Y++F PLP T E +
Sbjct: 229 GRAPTEAEL-VDAVRGFSRCFETLVSSGKPIVGHNMLLDLLMLYNQFCEPLPPTFAELKA 287
Query: 230 SVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKA--FSVLCPQIALGSKSTHLALQPS 287
+++ FP + DTK + + ++Q K T LS A FSV H AL
Sbjct: 288 ALSAVFPLVYDTK---HMSLQIRQTSKWMKTVLSGADLFSV------------HKAL--- 329
Query: 288 VKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVF---AQACSHLGIDFKQQSSSENLAHN 344
V V I HEAG DA+ GCVF A +HL + S + H
Sbjct: 330 TDVLVPYAPIVKGAPAGLRAHEAGSDAYAAGCVFIKLAHILAHLALQPTHHLSWRH--HQ 387
Query: 345 EKLREHVNLLYLSWTNGEIINLS 367
E ++ + N + L INLS
Sbjct: 388 EAVKAYANRVNLIRAQYHHINLS 410
>gi|328717201|ref|XP_001944100.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Acyrthosiphon
pisum]
Length = 534
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 157/351 (44%), Gaps = 57/351 (16%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FL K+ FDFN H V YL+ E+E K + E LD +
Sbjct: 110 VEFLCKHNFDFNKLFHSRVPYLTDEEELKI--------KSEMLDEFFF------------ 149
Query: 61 PDILFAERMKDR-LSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS 119
D F +K R + E L +L+ E + N +Q F I PA ++
Sbjct: 150 -DKYFETNIKFRSIEEELMKVLKIVSEWYDTA---NYGEQTFLEINGCNEPAYTI----- 200
Query: 120 HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
L+Q + K L Y+ + E+ N I IE+ ++ ++L K + + K++
Sbjct: 201 ----LMQYYL---LKKLKYILID-ESQLGLN-ITKIEANTNSEILNKTIHENLKLNL--- 248
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ +G ++++ L+S KK I+GHNC LDI + ++FF PLP ++F + V F I
Sbjct: 249 LNKMMGIKYLMKLISKLKKPIIGHNCALDILILSNQFFTPLPENFKDFQNFVFNNFGPIY 308
Query: 240 DTKILLNS-NSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIR 298
DTK+L I+ + K +SL + +S L + G K + +E E D++
Sbjct: 309 DTKLLCKEVKRIVSKNDKWIGSSLPEIYSFL--KDGDGKKYSDTIRIQLTGIE-EPQDMK 365
Query: 299 SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLRE 349
H AG+DA+ TG F + H+ F S +EN++ L E
Sbjct: 366 L--------HHAGWDAYYTGYCFVRMI-HIIKSF--SSKTENMSLRYTLTE 405
>gi|315042243|ref|XP_003170498.1| hypothetical protein MGYG_07743 [Arthroderma gypseum CBS 118893]
gi|311345532|gb|EFR04735.1| hypothetical protein MGYG_07743 [Arthroderma gypseum CBS 118893]
Length = 563
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 79/167 (47%), Gaps = 25/167 (14%)
Query: 193 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 252
L S ++VGHN F D+ + Y F G LP E+F S+N+ FP +IDTK L + +L+
Sbjct: 315 LKSGPPVLVGHNLFTDLVNFYKCFIGDLPRRVEDFQQSINELFPLVIDTKYLATAGGVLR 374
Query: 253 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY 312
+ S A S LC LG++ K E D S+ S HEAGY
Sbjct: 375 E--------ASSALSTLCEN--LGAREVP-------KFETHPD--HSAYTVSTPIHEAGY 415
Query: 313 DAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLRE--HVNLLYLS 357
D+ MT +F + L + + SSS N R+ V+L+ LS
Sbjct: 416 DSLMTAQIFLK----LAVQLYETSSSREALLNRANRDAAEVDLMDLS 458
>gi|431910469|gb|ELK13541.1| Poly(A)-specific ribonuclease PARN [Pteropus alecto]
Length = 635
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/474 (20%), Positives = 192/474 (40%), Gaps = 85/474 (17%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDS--WHSLKEIRDTHLF 58
+DFLA FDFN G+ YL++E+E + + Y+++ L S +L + +
Sbjct: 188 IDFLASQGFDFNKVFRNGIPYLNQEEE----RQLREQYDEKRLQSNGAGALSYV-SPNTS 242
Query: 59 NIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNG 116
P + ++ K D++ E + LL++ + + + L+
Sbjct: 243 KCPVTIPEDQKKFIDQVVEKIEDLLKSEENKN-----------------------LDLDP 279
Query: 117 FTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 175
T Q LI Q + K+ K + + E V+ ++ E K+ ++ EQ+
Sbjct: 280 CTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVVSKVDEEERKRREQQKHAKEQE-- 337
Query: 176 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP + +++V
Sbjct: 338 ---ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPAKSNTAVNTVALSL 394
Query: 236 P--HIIDTKILLN------------------------SNSILQQRMKKSSTSLSKAFSVL 269
P + + K+++ + + + + + ++ F +
Sbjct: 395 PLSYFCNLKVVIAFHDNCITVWDSKGFILDLNEFKEMTTCVFPRLLDTKLMASTQPFKDI 454
Query: 270 CPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+L L P +VE +D S + S HEAGYDA++TG F ++L
Sbjct: 455 INNTSLAELEKRLKETPFTPPKVESAEDFPSYDTASEQLHEAGYDAYITGLCFISMANYL 514
Query: 329 GIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKI 388
G F A ++ + N L+L ++++ N L +++H
Sbjct: 515 G-SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---- 563
Query: 389 LFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
V+ FP K D+ + S +G I + +D+T+ FV S+ + V
Sbjct: 564 -----VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPDQV 608
>gi|313213029|emb|CBY36908.1| unnamed protein product [Oikopleura dioica]
Length = 375
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 22/232 (9%)
Query: 111 AISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIES-ESDKKMLMKEVK 169
+++L S+ LI + ++ F +SG N ++ V+ +++ ++++++ + EV
Sbjct: 71 SLNLPPCNSYIRRLIYMTLKPEFAGKTQF-ISGRNENNEPVVTILKTIKTEEEVKLAEVD 129
Query: 170 DEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFF-GPLPLTAEEFI 228
E E ++K +GF H++ ++S K +V H LD+ FF LP T EEF
Sbjct: 130 AE-----EEAMKEKLGFLHILRVISVSKTPLVFHAGELDLYLTMKHFFCDELPETLEEFK 184
Query: 229 SSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ-IALGSKSTHLALQPS 287
S FP I DT +L++ N L+ + + SL + F + Q AL + + H+A
Sbjct: 185 SITTATFPQIFDT-LLMSRNEPLKSNFPEGN-SLGEIFKKVQDQPFALNAANIHIA---- 238
Query: 288 VKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSE 339
D R G HEAGYDA+MTG F +L + K ++ ++
Sbjct: 239 -------DGYRDYKAFGGQVHEAGYDAWMTGVAFIHMMGYLNLVSKTKTEAK 283
>gi|118349638|ref|XP_001008100.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila]
gi|89289867|gb|EAR87855.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila SB210]
Length = 578
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
+GF +++ + + K+ I+GH D+ + Y F LP T EF+ VNKYFP++IDTK+
Sbjct: 278 LGFSLIVEAIVNSKRPIIGHYMGYDLFYFYDHFIDVLPNTFVEFVEKVNKYFPYVIDTKV 337
Query: 244 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 303
L LQ ++KK L + + K + L +D + S +
Sbjct: 338 LARK---LQNKVKKLPLHLEGLYRAVAKDEKCLKKHHNTVL---------TNDPQFSKYT 385
Query: 304 -SGVKHEAGYDAFMTGCVFAQAC 325
G HEAG+D+++TG F C
Sbjct: 386 KEGQLHEAGFDSYITGASFIGMC 408
>gi|403340574|gb|EJY69575.1| Poly(A)-specific ribonuclease PARN [Oxytricha trifallax]
Length = 927
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 32/191 (16%)
Query: 157 SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKF 216
+E +K L+K+ + E+ EM GF V++ L KK I+GHN DI ++Y++F
Sbjct: 328 TEEEKAKLLKQKEFERLFTYEM------GFSLVVEDLMKAKKPIIGHNMIYDICYLYNQF 381
Query: 217 FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALG 276
LP +FI N+ FP+I DTK+L N+ T L K +
Sbjct: 382 IDKLPNEYSDFIKIWNEQFPYIYDTKVLSNAAEYF------GRTDLGKVY---------- 425
Query: 277 SKSTHLALQPSVKVEVEVD-DIRS--SNWNSGVK----HEAGYDAFMTGCVFAQACSHLG 329
K T+ P +K + ++ D++ N++ HEA YDA+MTG F +
Sbjct: 426 EKCTN---DPKLKSQFRINFDLQGGFGNYDGAAMLAHYHEAAYDAYMTGVAFVNIVKYKE 482
Query: 330 IDFKQQSSSEN 340
++ ++ EN
Sbjct: 483 VERPKEEKKEN 493
>gi|317147888|ref|XP_001822359.2| CAF1 family ribonuclease [Aspergillus oryzae RIB40]
Length = 561
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/372 (22%), Positives = 149/372 (40%), Gaps = 92/372 (24%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FL + +F N+ +GV YLSRE+E A+ Y S+ +KE L
Sbjct: 111 VEFLLENKFCLNSLYSDGVHYLSREEETIAIARAAERYGRTSVRKVIDVKETEHDSL--- 167
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS- 119
F ++ + WL E E + ++ + K+ P++ LN F
Sbjct: 168 ---AFLGAVRYLVDGWLA-----LGEAREAYLNIPPPRRYTASPKPKIMPSV-LNNFQKR 218
Query: 120 --HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE 177
HQL+ ++ A+++V I+ + D++ K +++++ A
Sbjct: 219 LVHQLIEVEYPSLVTISRPAFIQV-------------IDYDEDRE---KAIQEQRMARAR 262
Query: 178 MSIKASIGFRHVIDLLS----------------------------------------SEK 197
+ IGFR +++ LS + +
Sbjct: 263 ERVWKQIGFRWIVEALSGGDLSHLDPFCFGSIMNSSTVVEPQVSLHGFSEKLQQRLRTHR 322
Query: 198 KLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKK 257
++VGHN F D+ ++Y FFGPLP EEF + V+ FP ++DTK + +
Sbjct: 323 PVLVGHNLFTDVVYLYRCFFGPLPDKLEEFQAIVHHMFPILMDTKYMATHDC-------- 374
Query: 258 SSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSG-VKHEAGYDAFM 316
+ P+ +L + +L + K+ V + S +NS + HEAGYD+ +
Sbjct: 375 ---------GSITPKSSLSEINDNLLHIKTPKISVHE---QHSKYNSQRIDHEAGYDSLL 422
Query: 317 TGCVFAQACSHL 328
T +F + + L
Sbjct: 423 TAQIFIKLSAQL 434
>gi|350403678|ref|XP_003486873.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Bombus impatiens]
Length = 653
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 139/341 (40%), Gaps = 87/341 (25%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFL K+ FDFN + G+SY+ E H+ ++++ SL + F
Sbjct: 110 IDFLYKHGFDFNKFLVGGISYIDETDESLLRDHI----AHGDVENYLSLLSYDEEENF-- 163
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ K ++ EW+ L N EV + P + + H
Sbjct: 164 ------KECKSKVYEWISNKLENAPLKLEV-----------------ITPMVQ---YVLH 197
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+ L R ++ D+ ++ +N S NV+ I S + + K +E +D +
Sbjct: 198 KDL------RNNYNDIW---ITSDNK-SINVMK-ISSNAQDDLFKKGNLEEALLDVYL-- 244
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
GF V LLSS KK I+GHN LD+ ++ +F+ PLP + +EF S+++ FP I D
Sbjct: 245 ----GFSKVFKLLSSSKKTIIGHNILLDLMFMHQQFYKPLPDSYKEFKSNIHTLFPQIYD 300
Query: 241 TKIL----------------LNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 284
TK L +NS +IL + T+ + + P+I + +H
Sbjct: 301 TKFLSFELRKLHSRDEVNWKINSLNILYEYF----TTQGRITTYNSPEIIFNEEFSHYI- 355
Query: 285 QPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQAC 325
+ N+ H AG+D++ G VF +
Sbjct: 356 ------------VDKKNY-----HSAGWDSYFCGYVFVKMA 379
>gi|425777876|gb|EKV16031.1| CAF1 family ribonuclease, putative [Penicillium digitatum Pd1]
gi|425780003|gb|EKV18026.1| CAF1 family ribonuclease, putative [Penicillium digitatum PHI26]
Length = 553
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 141/354 (39%), Gaps = 74/354 (20%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
M+FL F + GV YLSRE E A++ Y + +K +D H
Sbjct: 111 MEFLLANHFSIDHMCTFGVRYLSREDEKLAIRRATEKYHSRNAVQVADIK--KDDH---- 164
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ F E ++ R++EWL + R+ + PS ++ P G ++
Sbjct: 165 ESLEFLEAVRVRVNEWLEQGEKRREWLNIPPPSS-----------MQLIPGSIPTGLSNM 213
Query: 121 QLLLIQLVVRKHFKDLA------YLRVSGENSCSQNVIVYIESESDKKMLMKEVK----- 169
Q L+ ++ + +L ++++ + C++ E+ K+ MK V+
Sbjct: 214 QKWLVHHLISDEYPNLTSRGASTFVQIEFRDPCNEQYTF----ETKLKVKMKRVRKQIGF 269
Query: 170 ------------DEQKIDAEMSI-----KASIGFRHVID----LLSSEKKLIVGHNCFLD 208
+E + DA + + + G + + D L + ++VGHN F D
Sbjct: 270 RWIAEALVGGSLEELETDAFHPLMKIIEQPTFGVQQLSDKVKNRLQENRPVLVGHNMFCD 329
Query: 209 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 268
+ Y F GPLP T EF + ++ FP + DTK + +
Sbjct: 330 LLFFYRCFLGPLPNTLVEFQTVIHDLFPMLADTKYMATHDC-----------------GS 372
Query: 269 LCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK-HEAGYDAFMTGCVF 321
L P +L +T LA S K+E+ D R S + + HEAGYD+ + F
Sbjct: 373 LNPMSSLEELNTTLAGIGSPKIEI---DPRFSKYKFRTRTHEAGYDSMLAAMAF 423
>gi|340723245|ref|XP_003400002.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1-like [Bombus
terrestris]
Length = 561
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 139/349 (39%), Gaps = 95/349 (27%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
MDFL K+ FDFN + G+SY+ E L H+ ++ L SL + F
Sbjct: 110 MDFLYKHGFDFNKFLVGGISYIDEIDEKLMLDHITQGDIEDCL----SLLSYDEEENF-- 163
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ K ++ EW+ N+ E + ++ ETI P
Sbjct: 164 ------KECKSKVCEWIS----NKSENAPLK---------LETI----TP---------- 190
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
++Q V+ K ++ Y + + C ++ I + + K ++ +D +
Sbjct: 191 ---MVQYVLHKDLRN-NYNDIWTTSDCKSIDVMKISGNAQDDLSKKNNLEDVLLDFYL-- 244
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
GF V LLSS KK+I+GHN LD+ ++ +F+ PLP + +EF S+++ FP I D
Sbjct: 245 ----GFSKVFKLLSSSKKMIIGHNILLDLMFMHQQFYKPLPDSYKEFKSNIHTLFPQIYD 300
Query: 241 TKIL------------------------LNSNSILQQRMKKSSTSLSKAFSVLCPQIALG 276
TK L +NS +IL + T+ + + P+I
Sbjct: 301 TKFLSFELRKLYSKDEGKEHXXRNVNWKINSLNILYEYF----TTQGRIITYNSPEIIFN 356
Query: 277 SKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQAC 325
+ +H + N+ H AG+D++ G +F +
Sbjct: 357 EEFSHYI-------------VDKKNY-----HSAGWDSYFCGYIFVKMA 387
>gi|297283531|ref|XP_002808334.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like [Macaca mulatta]
Length = 596
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 101/447 (22%), Positives = 182/447 (40%), Gaps = 70/447 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 67 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 123
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 124 PVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 162
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 163 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 216
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP
Sbjct: 217 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPR- 275
Query: 239 IDTKILLNSNSILQQRMKK---SSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVD 295
+ + I + ++ ++TSL++ L + + P KVE +
Sbjct: 276 --XAFFEDLSFIXKSQLGTDIINNTSLAE----------LEKRLKEIPFSPP-KVE-SAE 321
Query: 296 DIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLY 355
S + S HEAGYDA++TG F ++LG F A ++ + N L+
Sbjct: 322 GFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLF 380
Query: 356 LSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKV 415
L ++++ N L +++H V+ FP K D+ + S
Sbjct: 381 LM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-A 424
Query: 416 YGPTSVISVYHVDETAVFVQFSRAEMV 442
+G I + +D+T+ FV S+ E V
Sbjct: 425 FG---NIQISWIDDTSAFVSLSQPEQV 448
>gi|198278452|ref|NP_001030038.1| poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Mus musculus]
gi|187957406|gb|AAI58034.1| Poly(A)-specific ribonuclease (PARN)-like domain containing 1 [Mus
musculus]
Length = 531
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 149/355 (41%), Gaps = 65/355 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y FD+N + G+ Y++ EQE K +KH +W + +
Sbjct: 112 VQFLNQYGFDYNKFLKNGIPYMNEEQEKK-IKH------SILRGNWRVRSSLDKDQI--- 161
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + D++++WL +EG + ++L G
Sbjct: 162 ------KVVIDKVTQWLDL----AEEGDQ----------------------MTLPGIAGF 189
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
Q +QLV+R+ ++ V E + VIV S+ + L D+ E +
Sbjct: 190 QAFEVQLVLRQALPNI--WTVLKE----EWVIVKKVSQPQRWYLEHASCDQVSCWKEQIL 243
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +ID
Sbjct: 244 LSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLID 303
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQP-SVKVEVEVDDIRS 299
TK + + I ++ ++L + + VL + S + + K E
Sbjct: 304 TKNV--TKDIWKELRFPRVSNLLEVYEVLSSNLNPTKDSGPVIIHARQCKKYAE------ 355
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLL 354
+ HEA YDAF+ G V + +HL + Q+ H +++++L
Sbjct: 356 ----TKCPHEAAYDAFLCGSVLLKV-AHLLL---QRVHGNGAVHEPAFPQYLDVL 402
>gi|403284980|ref|XP_003933822.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Saimiri boliviensis
boliviensis]
Length = 531
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 146/338 (43%), Gaps = 68/338 (20%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W + +
Sbjct: 112 VQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH------DILSGNWRVRSSLDKDQI--- 161
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + D ++ WL L + D ++L G
Sbjct: 162 ------KVVIDEVTRWLD-LAKEGD-------------------------WMTLPGIAGF 189
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ ++ L+ G V+V S+ + L D + E
Sbjct: 190 QAFEVQLVLRQALHNIWTVLKDDG-------VVVKKVSKQHRWYLQSTSCDRESCWKENI 242
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ +++ KFF PLP + ++F +++ FP +I
Sbjct: 243 LLSAKGFSVFFHMLVKAQKPLVGHNMMMDLLYLHEKFFRPLPESYDQFKQNIHSLFPVLI 302
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ +SLS+ + VL + +K++ + ++ E V+
Sbjct: 303 DTKNV--TKDIWKEMNFPRVSSLSEVYEVLNSDLN-PTKNSGPEIVHAISCEKYVE---- 355
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL------GID 331
+ HEA YDAF+ G V + +HL GID
Sbjct: 356 ----TKCPHEAAYDAFLCGSVLLKV-AHLLLQKVHGID 388
>gi|330914662|ref|XP_003296730.1| hypothetical protein PTT_06908 [Pyrenophora teres f. teres 0-1]
gi|311331005|gb|EFQ95186.1| hypothetical protein PTT_06908 [Pyrenophora teres f. teres 0-1]
Length = 632
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 85/378 (22%), Positives = 145/378 (38%), Gaps = 109/378 (28%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLF--NI 60
FL FD A +GV YLSRE+ ++A + + D + I D L ++
Sbjct: 116 FLLNNGFDLGAPFAKGVQYLSREEAERAKQM--------AWDRLENKNPIPDLQLKKEDV 167
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ F R+++ + W G + D + +PAI + T
Sbjct: 168 ESLDFMRRIREAIKTWKTGSSSSLDVTTHTG--------------LPDKPAIPV--ITRF 211
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+ L+ +VR F +L + G + C + V + E+D ++ VK+ + SI
Sbjct: 212 EKRLVHQLVRAEFPELVTI---GRSECVRIVDLDPVREADN---IRRVKNRVR----ESI 261
Query: 181 KASIGFRHV----------------------------------------IDLLSSEKKLI 200
GFR + ++ L +++ ++
Sbjct: 262 VRQTGFRWIFEALVKGGAVDRADPLYVARTTGMSTTGDMYDIRDRYDRAVERLKTKQPVL 321
Query: 201 VGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-------LNSNSILQQ 253
VGHN F DI ++Y F G LP T + F ++++ FP IIDTK L LN++ LQ
Sbjct: 322 VGHNMFTDIVYLYRTFVGQLPDTLQGFQATIHDLFPKIIDTKYLATHAEGDLNASPTLQ- 380
Query: 254 RMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYD 313
IA+ L+ QP + D + ++ HEAGYD
Sbjct: 381 ------------------DIAM-----RLSTQPLPHIITHADYPKYQ--DTEAFHEAGYD 415
Query: 314 AFMTGCVFAQACSHLGID 331
+ +T + + + LG +
Sbjct: 416 SLLTATIMIKLAAKLGAE 433
>gi|403373024|gb|EJY86423.1| hypothetical protein OXYTRI_13677 [Oxytricha trifallax]
Length = 681
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 97/376 (25%), Positives = 160/376 (42%), Gaps = 90/376 (23%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQ-----EDKALKHVNSTYEDESLDSWHSLKEIRDTHL 57
FL +Y++DFN +E V YLS + +D LK E++ DS ++H
Sbjct: 131 FLQQYKYDFNKLFYESVGYLSYQDYQQYLDDIKLKQYQLALEEQQFDSPEC-TTYSNSHF 189
Query: 58 FN-----------IP--------------DILFAERMKDRLSEWLGGLLRNRDEGSEVQP 92
N IP DI FA+ + LLRN +
Sbjct: 190 LNLQTCLETVGRLIPKEDLETDPRNELKLDITFAK------FQLFHSLLRN------IPK 237
Query: 93 SFNDSKQQFETI--------FFKMRPAI------SLNGFTSHQLLLIQLVVRKHFKDLAY 138
F K +E I + K++ S+ FTS+Q + FK++
Sbjct: 238 MFPKDKLDYELIVDDQQGDMYIKVKVTTDEILRKSIKPFTSNQ---------QEFKEILE 288
Query: 139 LRVSGENSCSQNVIVY----IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLS 194
+ + E +I+ + ES K++ K V D K AE S+ ASI + ++
Sbjct: 289 IITNEE---KYEIILKNPQDFQIESLDKVVQK-VFDSIKSVAENSLGASI----IPLFIA 340
Query: 195 SEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQR 254
+ +K ++ N LD+ H+Y KF+ LP EF S+V+ +PHI D K L+N+ S ++
Sbjct: 341 ALQKPLIFQNGMLDLLHLYDKFYQSLPDDILEFRSNVSVLYPHIYDNKTLMNNFSDIEAT 400
Query: 255 MKKSS-TSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYD 313
M+ ++ +LS ++ K + +Q +V++ E + N N HEAG+D
Sbjct: 401 MRNNNGMNLSATYT-------RAMKDDYKFMQ-TVQIAPEFSEY---NLNLDESHEAGFD 449
Query: 314 AFMTGCVFAQACSHLG 329
A TG F + ++L
Sbjct: 450 ALQTGVTFFKLATYLN 465
>gi|332023541|gb|EGI63777.1| Poly(A)-specific ribonuclease PARN [Acromyrmex echinatior]
Length = 611
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 26/158 (16%)
Query: 177 EMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP 236
++ +K ++G +++ + +K+IVGHN LD+ HI +FF LP EF + ++ FP
Sbjct: 284 KLEVKEAVGLSNLMKKIVESEKIIVGHNMLLDLCHIVHQFFTSLPKDYLEFKTLLHGLFP 343
Query: 237 HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDD 296
+++DTK++ S K F +GS + +L + K + D
Sbjct: 344 NLLDTKVICQSQHF-------------KEF--------VGSSNLNLLIDIVSKPPFCIPD 382
Query: 297 I-----RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 329
I RS + ++ HEAGYDA++TG F ++LG
Sbjct: 383 IENVEGRSYSMSTEKYHEAGYDAYITGLCFIALSNYLG 420
>gi|390462231|ref|XP_002806785.2| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1 [Callithrix
jacchus]
Length = 510
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 146/338 (43%), Gaps = 68/338 (20%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W + +
Sbjct: 111 VQFLNQYGFNYNKFLKNGIPYMNEEQE-KKIRH------DILSGNWKVRSSLDKDQI--- 160
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + D ++ WL L + D ++L G
Sbjct: 161 ------KVVIDEVTRWLD-LAKEGD-------------------------WMTLPGIVGF 188
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ ++ L+ G VIV S+ + L D + E
Sbjct: 189 QAYEVQLVLRQALHNIWTVLKDDG-------VIVKKVSKQHRWYLQSTSCDRESCWKENI 241
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ +++ KFF PLP + ++F +++ FP +I
Sbjct: 242 LLSAKGFSVFFHMLVKAQKPLVGHNMMMDLLYLHEKFFRPLPESYDQFKQNIHSLFPVLI 301
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ +SLS+ + VL + +K++ + ++ E V+
Sbjct: 302 DTKNV--TKDIWKEMNFPRVSSLSEVYEVLNSDLN-PTKNSGPEIVHAISCEKYVE---- 354
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL------GID 331
+ HEA YDAF+ G V + +HL GID
Sbjct: 355 ----TKCPHEAAYDAFLCGSVLLKV-AHLILQKVHGID 387
>gi|326480283|gb|EGE04293.1| CAF1 family ribonuclease [Trichophyton equinum CBS 127.97]
Length = 585
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 193 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 252
L S ++VGHN F D+ + Y F G LP E+F ++N+ FP +IDTK + + +L+
Sbjct: 317 LRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDFQQAINELFPLVIDTKYMATTGGVLR 376
Query: 253 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS----SNWN-SGVK 307
ST + S P+ + S S + + +DI + S++N S
Sbjct: 377 DASSALSTLMENLGSRAVPKSGILSHFYASVSTFSSETNIGANDIETHPDHSSYNVSTPM 436
Query: 308 HEAGYDAFMTGCVFAQACSHL 328
HEAGYD+ MT +F + L
Sbjct: 437 HEAGYDSLMTAQIFLKLAVQL 457
>gi|426381306|ref|XP_004057290.1| PREDICTED: poly(A)-specific ribonuclease PARN [Gorilla gorilla
gorilla]
Length = 634
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 102/458 (22%), Positives = 173/458 (37%), Gaps = 128/458 (27%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDK----------------ALKHVNSTYEDESLD 44
+DFLA FDFN G+ YL++E+E + AL +V+ +
Sbjct: 113 IDFLANQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVT 172
Query: 45 SWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETI 104
K+ D + I D+L +E K+ E G R K ++T+
Sbjct: 173 IPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQR---------------KLIYQTL 217
Query: 105 FFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKML 164
+KM P L+ L ++K Y+ +S + E E ++
Sbjct: 218 SWKMFP-------------LVSLCLQKE----RYIVISKVD----------EEERKRREQ 250
Query: 165 MKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 224
K K++++++ ++GF VI +++ KL++GHN LD+ H +F+ PLP
Sbjct: 251 QKHAKEQEELND------AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADL 304
Query: 225 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 284
EF FP S S+ + +G KS
Sbjct: 305 SEFKEMTTCVFP----------------------SCSMKS--------LMMGLKS----- 329
Query: 285 QPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHN 344
+ S + S HEAGYDA++TG F ++LG F A +
Sbjct: 330 ---------AEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARS 379
Query: 345 EKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLK 404
+ + N L+L ++++ N L +++H V+ FP K
Sbjct: 380 KLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWK 424
Query: 405 AWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 425 TSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 458
>gi|326473493|gb|EGD97502.1| CAF1 family ribonuclease [Trichophyton tonsurans CBS 112818]
Length = 585
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 193 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 252
L S ++VGHN F D+ + Y F G LP E+F ++N+ FP +IDTK + + +L+
Sbjct: 317 LRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDFQQAINELFPLVIDTKYMATTGGVLR 376
Query: 253 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS----SNWN-SGVK 307
ST + S P+ + S S + + +DI + S++N S
Sbjct: 377 DASSALSTLMENLGSRAVPKSGILSHFHASVSTFSSETNIGANDIETHPDHSSYNVSTPM 436
Query: 308 HEAGYDAFMTGCVFAQACSHL 328
HEAGYD+ MT +F + L
Sbjct: 437 HEAGYDSLMTAQIFLKLAVQL 457
>gi|294934752|ref|XP_002781223.1| hypothetical protein Pmar_PMAR019548 [Perkinsus marinus ATCC 50983]
gi|239891558|gb|EER13018.1| hypothetical protein Pmar_PMAR019548 [Perkinsus marinus ATCC 50983]
Length = 672
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 103/475 (21%), Positives = 186/475 (39%), Gaps = 116/475 (24%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHV--NSTYEDESLDSWHSLKEIRDT--- 55
M+FL++ FD N CI GV +L EQE +A K V E + + K +
Sbjct: 160 MNFLSEAGFDLNECIKNGVGWLRPEQE-RAKKSVLEQRITEIRQMKEQATAKAASEATPA 218
Query: 56 --HLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAIS 113
+ PD+ +K+ + +WL RN G+ N+ + + F
Sbjct: 219 PPEISPGPDLDVINNVKETIGDWL----RNDPHGT------NNLEVPMPSAF-------- 260
Query: 114 LNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQK 173
Q LL+ V+ + +L Y S S ++ML+KE++ +
Sbjct: 261 -------QRLLMHSVIAAEYPNL-YSYSSRRAS------------DGERMLIKEIEGDDY 300
Query: 174 IDAEMSIKAS---IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISS 230
++ + +G R ++D ++ K+IVGHNCFLD+ H + + LP T EF
Sbjct: 301 TRHAGGLQQTTVQVGVRSLLD--AAADKVIVGHNCFLDVLHAQHRLYDALPSTVSEFKDK 358
Query: 231 VNKYFP-HIIDTKILLNSNSILQQRMKKSS-------------------TSLSKAFSVLC 270
+ F ++DTK + ++ L ++ TSL +
Sbjct: 359 WTERFKGGVLDTKYIAETHEFLSPLNPPATLKGLCDFMAHRHVQEHGDETSLGHLLRLEL 418
Query: 271 PQIALGSKSTHLALQPSVKV-----EVEVDDIRSSNWNSGV----------KHEAGYDAF 315
+ ++ ++QP + D +SS+ S + H+AGYDA
Sbjct: 419 VNLVSDGEADSTSIQPPHAARRLFHKEGSDAEQSSDGESTISLSEKPAVDMSHDAGYDAM 478
Query: 316 MTGCV----FAQACSHLGIDFKQQ----------SSSENLAHNEKLREHVNLLYLSWTNG 361
MT V ++ CS GID QQ S + L+ ++ L +N + L +
Sbjct: 479 MTALVCLLQLSEICSRKGIDMYQQLAFKDVSTTAMSKKALSISQLLPTSINRVRLVKSQP 538
Query: 362 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVY 416
++N++ + T + +++ Y + FP+ W++ + S V+
Sbjct: 539 SVLNIAGRDET------DMQRHFY----------MTNFPTSWTKWEVMKVWSPVW 577
>gi|221115125|ref|XP_002160561.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Hydra
magnipapillata]
Length = 502
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 140/321 (43%), Gaps = 36/321 (11%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLAK FDFN H+GVS++S +E+KA + + + + H I+ T N+
Sbjct: 110 IDFLAKNGFDFNKLFHQGVSFMSPWEEEKAREKLKKEINFIAHNELHRRTLIQTTT--NV 167
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D + E + RD+ + + ++ + K + F
Sbjct: 168 SDDV----------EKKSSVFIPRDQRDFINSVCENIEKFMKDDSLKTYDLPPCSPF--Q 215
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+ LL + + K+ + L V EN+ + +I ++ ++++ K + +E + E+
Sbjct: 216 RTLLYEYLEEKYPRGLYLKSVVNENN--EKIIRGVKITKNEEIFNKRIAEENLLLDEI-- 271
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
IGF VI LLS +K ++GHN +D+ + FF P EF + F I D
Sbjct: 272 ---IGFTKVIRLLSDCRKPLIGHNMLMDLFLTTTNFFSLPPENLSEFKVLLISLFSSIFD 328
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TK+L S+ K TSL K + + + P VK+ ++++ S
Sbjct: 329 TKLLC---SMQPLSSKVGGTSLEKLKTFV---------DDNRLPNPEVKLSNKLNNHSKS 376
Query: 301 NWNSGVKHEAGYDAFMTGCVF 321
H+AGYDA+ TG VF
Sbjct: 377 ---KNEYHQAGYDAYCTGLVF 394
>gi|426355066|ref|XP_004044958.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Gorilla gorilla gorilla]
Length = 513
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 120/270 (44%), Gaps = 52/270 (19%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W ++ D H +
Sbjct: 112 VQFLNQYGFNYNKFLKNGIPYMNEEQE-KKIRH------DILTGNWR-VRSSPDKHQIKV 163
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ D ++ WL L + D ++L G T
Sbjct: 164 --------VIDEVTRWLD-LAKEGD-------------------------WMTLPGITGF 189
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ ++ L+ G V+V S+ + L D + E
Sbjct: 190 QAFEVQLVLRQALPNIWTVLKDEG-------VVVKKVSKQHRWYLQNTSCDRESCWKENI 242
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +I
Sbjct: 243 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLI 302
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVL 269
DTK + + I ++ ++LS+ + VL
Sbjct: 303 DTKSV--TKDIWKEMNFPRVSNLSEVYEVL 330
>gi|384245538|gb|EIE19031.1| CAF1-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 600
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 132/333 (39%), Gaps = 58/333 (17%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FLA FDFN ++EG+ ++ D+ L + S + S I T
Sbjct: 77 LEFLAGQGFDFNKFVYEGIPFMRVADRDRRLAGL-------SREPCRSEISIHKTE---- 125
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDS--KQQFETIFFKMRPAISLNGFT 118
D+ F + ++S WL G R ++ E + + QQ E F A GF
Sbjct: 126 -DVEFVSSLVQQVSSWLKG--REKELMLEEVNGYQRAIQYQQLEKPQFG---AAQPPGF- 178
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+F+ A + ++ +E+ + +K KE + E+
Sbjct: 179 -------------YFESAAGPQGRRAIRLTRTTAAEVEAFNLRK---KEAEFEK------ 216
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP-H 237
++A+ GF V++ L K VGHNC D+ PLP F V +FP
Sbjct: 217 -VRAAAGFCAVLERLRDSGKPAVGHNCAFDLTFTLEHLAQPLPPDWTAFKRLVQSWFPGG 275
Query: 238 IIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIA--------LGSKSTHLALQPSVK 289
+ DTK L+ L Q + STSL + L P L S L PSV+
Sbjct: 276 LWDTKYLVKQLPGLFQALP--STSLQPLYQALNPGGTPQPEVLEYLNSTGDRL---PSVE 330
Query: 290 VEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFA 322
+ +S HEAGYDAFMTG VFA
Sbjct: 331 HAAAFARYTGPDADSHA-HEAGYDAFMTGAVFA 362
>gi|407410179|gb|EKF32714.1| ribonuclease, putative [Trypanosoma cruzi marinkellei]
Length = 487
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
+GFR + L+ KK I+GHN +LDI ++ PLP E+F V++ FP I DTK
Sbjct: 211 LGFRQIWKCLTKCKKPIIGHNFWLDIMFMFHMHEAPLPARYEDFKKQVHELFPCIYDTKT 270
Query: 244 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 303
L S +++ +KK L + C S P E +
Sbjct: 271 L--SKNMIFSALKK-CYHLDNLYRECCKINKESKNSIVFRFPPGFHFYDE-----RCIGS 322
Query: 304 SGVKHEAGYDAFMTGCVFA 322
G HEAGYDA+MTG VFA
Sbjct: 323 EGKAHEAGYDAYMTGIVFA 341
>gi|242761628|ref|XP_002340217.1| CAF1 family ribonuclease, putative [Talaromyces stipitatus ATCC
10500]
gi|218723413|gb|EED22830.1| CAF1 family ribonuclease, putative [Talaromyces stipitatus ATCC
10500]
Length = 536
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 145/360 (40%), Gaps = 81/360 (22%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPD 62
FLAK F+ GV YLS+++ D+ L + W + K R + + D
Sbjct: 118 FLAKIGFNLGETCENGVPYLSKKEVDEILDEARRFHGSR----WQTAK--RAQIILSDDD 171
Query: 63 I---LFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS 119
I F ++ + EWL D + PA++ + FT
Sbjct: 172 IESAAFLAGIRKDIEEWLNADWDKPD--------------------YLHVPALNGHAFTR 211
Query: 120 HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKI----- 174
+ LI +V + L +R SGE S ++ Y E++ KK K + +Q++
Sbjct: 212 FEKRLIHQLVETEYPSLTSIR-SGE---SIKIVKYDEAKEHKKYEGKMSRVQQRLIDHRG 267
Query: 175 ---------DAEMSIKASIGFR------------HVIDLLSSEKK-----LIVGHNCFLD 208
++S S F H +++ K IVGHN F+D
Sbjct: 268 FAWVIEALAGGDLSQMTSQMFEPLVIGEGPDAEYHKTQIITKLKARNGQIAIVGHNLFMD 327
Query: 209 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 268
+ +++ F+G LP E+F +++ FP +IDTK + + M ++T L K +
Sbjct: 328 VTYLWQCFYGDLPDRVEDFAQLLHEKFPMLIDTKYIFTHDC---GDMNPAAT-LEK-IAE 382
Query: 269 LCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
C +IA +P +K + +D++ + HEAGYD+ +T VF + L
Sbjct: 383 ACKRIA----------KPQIK--LVMDNLHTRYRKKACPHEAGYDSLLTAQVFIKQAVQL 430
>gi|432111779|gb|ELK34824.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Myotis davidii]
Length = 494
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 108/247 (43%), Gaps = 57/247 (23%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y FD+N + G+ Y++ EQE K +KH T +W +R +
Sbjct: 74 VQFLNQYGFDYNKFLKHGIPYMNEEQE-KQIKHNILT------GNW----RVRSS----- 117
Query: 61 PDILFAERMK---DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGF 117
L ++MK D ++ WL +EG ++L G
Sbjct: 118 ---LDKDQMKAVIDEVTRWL----HLAEEGD----------------------WMTLPGI 148
Query: 118 TSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDA 176
Q +QLV+R+ D+ LR Q VIV S + L D +
Sbjct: 149 AGFQAFEVQLVLRQALPDIWTVLR-------DQAVIVKKVSRQHRWYLQNTSSDRESCWK 201
Query: 177 EMSIKASIGFRHVIDLL-SSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
E + ++ GF +L ++K+ +VGHN +D+ H++ KFF PLP +F S+++ F
Sbjct: 202 EKILLSARGFSVFFQMLVKAQKQPLVGHNMLMDLLHLHEKFFRPLPENYHQFKSNIHSLF 261
Query: 236 PHIIDTK 242
P ++DTK
Sbjct: 262 PVLLDTK 268
>gi|149042528|gb|EDL96165.1| rCG49798 [Rattus norvegicus]
Length = 605
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 106/248 (42%), Gaps = 37/248 (14%)
Query: 196 EKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRM 255
+ KL+VGHN LD+ H +F+ PLP+ EF FP ++DTK++ +
Sbjct: 254 QGKLVVGHNMLLDVMHTIHQFYCPLPVDLNEFKEMTTCVFPRLLDTKLMAS--------- 304
Query: 256 KKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDA 314
++ F + +L L P +VE + S + S HEAGYDA
Sbjct: 305 -------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDA 357
Query: 315 FMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSE 374
++TG F ++LG + + A ++ + N L+L ++++ N
Sbjct: 358 YITGLCFISMANYLGSLLSPPKTCVS-ARSKLIEPFFNKLFLM----RVMDIPYLNLEGP 412
Query: 375 SLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFV 434
L +++H V+ FP K D+ + S +G I + +D+T+ FV
Sbjct: 413 DL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFV 457
Query: 435 QFSRAEMV 442
S+ E V
Sbjct: 458 SLSQPEQV 465
>gi|380479005|emb|CCF43280.1| hypothetical protein CH063_03036 [Colletotrichum higginsianum]
Length = 632
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 31/178 (17%)
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+ + + + D L + +IVGHN F+D+ +Y+ F LP T ++F++ +++ FP+I+D
Sbjct: 402 RVADALKTIEDQLKRSRPVIVGHNQFMDLLFLYNTFVDDLPATLDDFLAKIHELFPYILD 461
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TK++ ++ + + L + + A+ H+ P
Sbjct: 462 TKLM-----AIKHQAIEGEDPLVDLYDRFSDRKAM----PHIDWPPGYGYG--------- 503
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENL---AHNEKLREHVNLLY 355
SG H+AG+D++MTG VF + L + ENL +E++ + + L Y
Sbjct: 504 --RSGTAHQAGFDSYMTGTVFLRLACRL--------AYENLTGGGGDEQVGQRMKLFY 551
>gi|307105317|gb|EFN53567.1| hypothetical protein CHLNCDRAFT_136728 [Chlorella variabilis]
Length = 557
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 133/328 (40%), Gaps = 49/328 (14%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN I++G+ Y+ D L V+ +E + +
Sbjct: 76 IDFLASCGFDFNKSIYDGIGYMPVALRDARLASVD-----------RPPRERSEVLVRKA 124
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D+ F + ++EWL G + E + PA++ +
Sbjct: 125 EDVAFVKDTVASVAEWLQG-------------------EDLELVL----PAVN----SYQ 157
Query: 121 QLLLIQLVVRKHFK---DLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE 177
+LL Q + R F + RV+ E + + + + + E + +++++A
Sbjct: 158 RLLQYQELRRPQFGVADPPGFYRVAAEEGNGFQLRLTRAAPGEAEAWEAEQR-QKRVEA- 215
Query: 178 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP- 236
I + GF V++ + K VGHN D+++ + LP + E+ V ++FP
Sbjct: 216 --IHTAAGFAAVMEAMRDSGKPAVGHNLAFDLSYSLHSYAQELPGSWAEYKQLVGRWFPG 273
Query: 237 HIIDTKILLNSNS--ILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEV 294
+ DTK L + + L +++ + + ++ + GS A P V+
Sbjct: 274 GVYDTKFLSTAATGFPLFCHLEEQVEAFLQEAALRSVAASGGSSDGEAAELPLVEHAAGF 333
Query: 295 DDIRSSNWNSGVKHEAGYDAFMTGCVFA 322
+ + + HEAGYDA+MTG FA
Sbjct: 334 ERYKGAA-TEAFAHEAGYDAYMTGAAFA 360
>gi|440639009|gb|ELR08928.1| hypothetical protein GMDG_03595 [Geomyces destructans 20631-21]
Length = 576
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 82/377 (21%), Positives = 143/377 (37%), Gaps = 103/377 (27%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALK------HVNSTYEDESLDSWHSLKEIRD 54
M FL K FD A +G+SY+SR+++ +A + + NST D + +
Sbjct: 119 MHFLRKNCFDIGAVFTKGISYISRKEQTQARQAFLERQNRNSTIPDIKIGPGDQVT---- 174
Query: 55 THLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISL 114
+ F + +L EW P D + F+ + L
Sbjct: 175 --------LDFYRNARRQLLEW-------------TDPKNKDVRDAMG--FYNVSVPGGL 211
Query: 115 NGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQK 173
+G+ Q L+ +VR FK+ A+L + + ++S + K+ +V
Sbjct: 212 SGY---QRRLVYQLVRTEFKEYRAFLPRKNADFVQ---VEKMDSAKEAKIAASKV----- 260
Query: 174 IDAEMSIKASIGFRHVIDLLS--------------------------------------- 194
I E + +GFR++ + L+
Sbjct: 261 IANEAQLSKQVGFRYIFEALAGGDLSAIAPNWFCVNAAGQSAFIDTSLKKLELSSLAKAL 320
Query: 195 -SEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQ 253
++ +++VGHN F D+ +Y F G LP T EF ++ FP +IDTK + + ++
Sbjct: 321 AAKSRVLVGHNLFTDLIFLYHTFIGILPPTVTEFQEKIHALFPMVIDTKYMATRDKLIDA 380
Query: 254 RMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYD 313
R S L + KS H+ P + + E S N HEAGYD
Sbjct: 381 RQSSSLQDLHQDV-----------KSQHI---PEICLPEEF----RSYQNRHQLHEAGYD 422
Query: 314 AFMTGCVFAQACSHLGI 330
+++T +F + + L +
Sbjct: 423 SYLTAQIFLKLAAKLDV 439
>gi|258566912|ref|XP_002584200.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905646|gb|EEP80047.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 487
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 145/370 (39%), Gaps = 96/370 (25%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+D L K F A G+ Y+SRE+E A V D L + D + N+
Sbjct: 21 IDVLLKSGFCMEAPFKVGLRYISREEEQAAKARVR--------DRKTRLAAMDDINHDNL 72
Query: 61 --PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
+ F + + +W+G + K + I + + S +G
Sbjct: 73 DAESVAFLAETRRAIDDWVG---------------IPNKKVNYVNIPGPEKRSASPSGIN 117
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESD--KKMLMKEVK------- 169
++Q L+ +VR + DL VS S VI Y + + ++ M+ V+
Sbjct: 118 NYQKRLVHQLVRSEYPDL----VSIGKSTFIQVIRYDQQRENSVQEARMRRVREHIFHQT 173
Query: 170 ------------DEQKIDAEMSIKASIG-----------FRHVIDLLSSEKKLIVGHNCF 206
D ++ + + S G + ++ L S+ ++VGHN F
Sbjct: 174 GFRWIVEAMVGGDLSRLPPQTFVDPSCGSPRREEKILENYDYMQAKLRSKHLILVGHNLF 233
Query: 207 LDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLN-------SNSILQQRMKKSS 259
D+ + Y FFG LP EEF++++++ FP I+DTK L +S+L++ K
Sbjct: 234 TDLVNFYKCFFGSLPDKVEEFLATIHEIFPTIVDTKYLATHDCGSDFPSSMLEELDDK-- 291
Query: 260 TSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK-HEAGYDAFMTG 318
L +K +P++ V D N+N HEAGYD+ MT
Sbjct: 292 ---------------LNAKE-----RPTITV-----DPDHPNYNDQKPLHEAGYDSLMTA 326
Query: 319 CVFAQACSHL 328
VF + + L
Sbjct: 327 RVFLRLAAQL 336
>gi|298707724|emb|CBJ26041.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 705
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 122/282 (43%), Gaps = 25/282 (8%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
MDFL+K+ FDF A GV +LSR +E+ + +E E+ ++ R +
Sbjct: 107 MDFLSKHGFDFQAWASHGVPFLSRAEEEVVEGKLRRRWEREA-----TVAAERKEAVAAK 161
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQ----PS---FNDSKQQFETIFFK------ 107
+ A D + + G + +G+ ++ P D+ ++ E + +
Sbjct: 162 AEAEAAAGEGDGGAAAVEGPVHTARDGTTIESLQEPEKGMVKDALKKVEALLAESSSGGE 221
Query: 108 -MRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMK 166
++ ++ L Q L+ V D+ + G I + + +K +
Sbjct: 222 YVQKSVKLEPMNGRQRWLMYEFVGSSTADVKLSNLPGPAYARPMEIRTVCKDDPEKHAEE 281
Query: 167 EVK---DEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLT 223
E K DEQ ++ ++GFR V+D +S K ++ HN LD+ H + KF GP+P+
Sbjct: 282 EAKLRADEQARQL-GDLRRAVGFRRVVDEISKAGKPVICHNGLLDLLHTHDKFVGPIPVD 340
Query: 224 AEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKA 265
++ +++ P + D+K+++ + MK T L +A
Sbjct: 341 MDDGTRALHSLLPRLFDSKVVM--AKAMAAGMKLPRTVLGEA 380
>gi|242009862|ref|XP_002425701.1| poly A-specific ribonuclease,putative [Pediculus humanus corporis]
gi|212509602|gb|EEB12963.1| poly A-specific ribonuclease,putative [Pediculus humanus corporis]
Length = 500
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 132/323 (40%), Gaps = 67/323 (20%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL KY FDFN I++G++Y+S + E++ K N + +++S + I++ H
Sbjct: 107 LKFLCKYNFDFNKAIYKGINYISEKNENELKKFFNQ--DKITIESLYFSDCIKEIH---- 160
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
++ +W N E S++ ++ P SL
Sbjct: 161 ----------SKIDKW----RLNTKEKSDMIIKISE------------LPCKSLR----- 189
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
LI L + + F +L + VI IE M KE+ E K + +
Sbjct: 190 --YLILLEISQRFSNLQPTLTDDDAI----VIKKIE------MKRKEMNIEDKFFLQKKL 237
Query: 181 KASI-GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
I GF +I + + KK I+ HNC LDI IY +F PLP ++F + + K FP I
Sbjct: 238 FQDIIGFSKIIKEMRNVKKPIIAHNCILDIMTIYQQFIKPLPSNYKQFKNDIKKLFPIIY 297
Query: 240 DTKILLNS-NSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIR 298
DTK L N+++ + SK+ S + G+ + P + + D
Sbjct: 298 DTKFLTRELNNLINNEIP------SKSLSDVYLYFKNGNVVPKILYMPKIIMNTICDKF- 350
Query: 299 SSNWNSGVKHEAGYDAFMTGCVF 321
H+AG+D++ F
Sbjct: 351 ---------HDAGFDSYCAAHCF 364
>gi|242005773|ref|XP_002423735.1| poly A-specific ribonuclease PARN, putative [Pediculus humanus
corporis]
gi|212506937|gb|EEB10997.1| poly A-specific ribonuclease PARN, putative [Pediculus humanus
corporis]
Length = 550
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 120/280 (42%), Gaps = 44/280 (15%)
Query: 165 MKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTA 224
+K +++E + + I GF VI L+ KKLI+GH LDI +F PLP +
Sbjct: 232 IKNLREENFSNEKKKILNESGFTRVIKLMIDSKKLIIGHYLLLDILFTIKQFLSPLPNSY 291
Query: 225 EEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 284
EF ++ FP IIDTK + +++ + +K +S P + L
Sbjct: 292 SEFKELLHFLFPKIIDTKYMASTHDF--KGLKDTS----------LPNVV--EYFNTLGK 337
Query: 285 QPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSS--ENLA 342
P V D+ + HEA YDA+MTG F LGI +S ENL
Sbjct: 338 IPDVSTN---DNEQGYTLTEKKFHEAAYDAYMTGLAF------LGISNSLESLKVFENLP 388
Query: 343 HNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSH 402
+ L+ ++N L + +I ++ G + E + V FP
Sbjct: 389 DSSFLKPYLNKLKIQRI-FDIHCMNIGGKDEEPDRTG--------------VYHLSFP-- 431
Query: 403 LKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
K W RE IS+++ IS+ +++T+ FV+ + ++
Sbjct: 432 -KEWK-REHISELFVNCGYISISWINDTSAFVKVNEEHLI 469
>gi|344295143|ref|XP_003419273.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Loxodonta africana]
Length = 531
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 138/328 (42%), Gaps = 60/328 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y FD+N + G+ Y++ EQE K +KH +W + +
Sbjct: 112 VQFLNQYGFDYNKFLKNGIPYMNEEQERK-IKH------SILCGNWRVRSSLDKDQI--- 161
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + DR++ WL +EG ++L G T
Sbjct: 162 ------KMVIDRVTRWLAL----AEEGD----------------------WMTLPGITGF 189
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
Q +QLV+++ ++ + Q V V S+ + L + ++ E +
Sbjct: 190 QAFEVQLVLQQALPNIWTV------PKDQGVTVKKVSKQHRWYLENTSCERERCWKEKIL 243
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+ G + +L +K +VGHN +D+ H++ KFF LP + ++F +++ FP +ID
Sbjct: 244 LYAKGLSVLFQMLVKAQKPLVGHNMLMDLLHLHEKFFRHLPESYDQFKLNIHHLFPILID 303
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TK + + I ++ ++LS+ + VL + S + + S K E +
Sbjct: 304 TKNV--TKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIVHAS-KCEKYAE----- 355
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 356 ---TKCPHEAAYDAFLCGSVLLKV-AHL 379
>gi|407849616|gb|EKG04306.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 487
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
+GFR + L+ KK I+GHN +LDI + PLP E+F V + FP I DTK
Sbjct: 211 LGFRQIWKCLTKCKKPIIGHNFWLDIMFMLHMHEAPLPTMYEDFKKQVYELFPCIYDTKT 270
Query: 244 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 303
L S S+ ++ K L + C S P E +
Sbjct: 271 L--SKSMFFSKLNK-CYHLDDLYKECCKINKESKDSIVFRFPPGFHFYDE-----KCIGS 322
Query: 304 SGVKHEAGYDAFMTGCVFAQACSHL----GIDFKQ 334
G HEAGYDA+MTG VFA L GI+FK+
Sbjct: 323 EGKAHEAGYDAYMTGIVFAIMKDVLKNGDGIEFKK 357
>gi|328709367|ref|XP_001946252.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Acyrthosiphon
pisum]
Length = 631
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 101/473 (21%), Positives = 197/473 (41%), Gaps = 101/473 (21%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLK-----EIRDT 55
M+FL+ + FDFN G+ +L+ E + + Y+ L + K I D
Sbjct: 109 MEFLSNHNFDFNKLFKHGIPFLTVPDEQVLQNELLNRYKQNCLQAQTPSKVSDCIPIPDN 168
Query: 56 HLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 115
H +I E +++ E L +S+ E I A N
Sbjct: 169 HKADI------ETACEKVKELL------------------ESETISEVII-----AEKTN 199
Query: 116 GFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVI-VYIESESDKKMLMKEVKDEQKI 174
F +L+ ++ +K +VS ++ +++ V + + K+LM + E++
Sbjct: 200 SFVR------KLIYQEVYKRYPDTKVSLQSRIVEDIGNVMVAFKGRTKLLMAHERMERE- 252
Query: 175 DAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKY 234
++ ++ ++GF V+ + + K IVGHN LD+ H+ +F PLP + EF + V
Sbjct: 253 --QIELEKAVGFSAVLKKIIASNKPIVGHNMTLDVCHMIHQFCLPLPSSYSEFQAMVKTI 310
Query: 235 FPHIIDTKILLNS-------NSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPS 287
+DTK + + S + +KKS + ++ L P++ P
Sbjct: 311 SYRFLDTKYISGTEPLKGFFGSTVLNDLKKSLAEQCQNYTDLEPEV------------PE 358
Query: 288 VKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEK- 346
V E+ + H+AGYDA++T VF C+ K + E+++ +
Sbjct: 359 VGYSEEISKL----------HDAGYDAYLTSTVFVNLCNLYA---KVKGIKEHISTDSSY 405
Query: 347 LREHVNLLYL-SWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKA 405
L+++ N L++ + +NL N L +++H V FP K
Sbjct: 406 LKQYENKLFMIRYNEDPCLNL---NGPEPQL----QRSH---------VYHITFPPEWKT 449
Query: 406 WDIRECISKVYGPTSVISVYHVDETAVFVQF---SRAEMVSKFLDLKGSLDRN 455
D I+ ++ P + + + ++++T+ +V S+A+ ++K L +L +N
Sbjct: 450 ID----ITNIFSPFTNVYIKYINDTSAWVALRDGSQAKAMNKILPKLQALHKN 498
>gi|396479569|ref|XP_003840786.1| similar to CAF1 family ribonuclease [Leptosphaeria maculans JN3]
gi|312217359|emb|CBX97307.1| similar to CAF1 family ribonuclease [Leptosphaeria maculans JN3]
Length = 630
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 81/367 (22%), Positives = 139/367 (37%), Gaps = 89/367 (24%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPD 62
FL + F+ A GV YLSR++ +A + E ++ LKE ++
Sbjct: 116 FLLSHGFNLGAPFASGVQYLSRQEAARARQMAWDRIEKKNPVEDMQLKEE------HVDS 169
Query: 63 ILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQL 122
+ F R+++ +++W +S T + A + + +
Sbjct: 170 LDFVRRVREAITQW----------------KTTNSDCLEVTTHTGLPKAPHVQAISRFEK 213
Query: 123 LLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID------- 175
L+ +VR F D + G + C + + +E E+D MK EQ I
Sbjct: 214 RLVHQLVRAEFPDQVSI---GRHDCIRIIDHDVEREADNVRRMKSRVKEQIIRQTGFRWI 270
Query: 176 ------------AEM-------SIKASIG-----FRHVIDLLSSEKKLIVGHNCFLDIAH 211
AE S+ A + + ++ L + + ++VGHN F DI +
Sbjct: 271 FEALVKGGDIDRAEPLYLSRTSSLTADVSGLKDRYDRAVERLKTRQPVLVGHNMFTDIVY 330
Query: 212 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-------LNSNSILQQRMKKSSTSLSK 264
+Y F G LP T + F +++ FP I+DTK L LN++ LQ+
Sbjct: 331 LYRTFVGELPDTLQGFREVIHELFPKIVDTKYLATYTEGDLNASPTLQE----------- 379
Query: 265 AFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQA 324
IA G +L E+ S + HEAGYD+ +T + +
Sbjct: 380 --------IAQGLSHQYLP-------EIVTHPDHSKYEGAEAFHEAGYDSLLTATIMIRL 424
Query: 325 CSHLGID 331
+ LG +
Sbjct: 425 AARLGAE 431
>gi|169619537|ref|XP_001803181.1| hypothetical protein SNOG_12967 [Phaeosphaeria nodorum SN15]
gi|111058647|gb|EAT79767.1| hypothetical protein SNOG_12967 [Phaeosphaeria nodorum SN15]
Length = 606
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 84/382 (21%), Positives = 145/382 (37%), Gaps = 101/382 (26%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPD 62
FL FD GV YLSR++ ++ + E+++ + LK+ ++
Sbjct: 116 FLLGCGFDMAKPFTHGVEYLSRQEAEQIKQATADRLENKNPPADMQLKDT------DVDS 169
Query: 63 ILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQL 122
+ F R+++ + +W G ++S K +PAI + +
Sbjct: 170 LDFMRRVREAIIKWKAGT--------------SESLAITTHTGLKEQPAIPT--ISRFEK 213
Query: 123 LLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKA 182
L+ +VR + +L + G + C + + E+D +K EQ +
Sbjct: 214 RLVHQLVRAEYPELVSM---GRSECVRIINFDPLREADNNRRIKSRVKEQ-------VNR 263
Query: 183 SIGFRHV-----------------------------------IDLLSSEKKLIVGHNCFL 207
GFR V ++ L + + ++VGHN F
Sbjct: 264 QSGFRWVFEALAQGNLDHAEPLYVAGNITADSHNVRDRYDRAVERLRTRQPVLVGHNMFT 323
Query: 208 DIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-------LNSNSILQQRMKKSST 260
DI ++Y F G LP T + F +++K FP I+DTK L LN++ LQ
Sbjct: 324 DIVYLYRTFVGELPDTLQGFRDAIHKEFPKIVDTKYLATHAEGDLNASPTLQ-------- 375
Query: 261 SLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCV 320
+IA G L QP + D S HEAGYD+ +T +
Sbjct: 376 -----------EIAEG-----LTKQPLPDIVTHTD--HSKYQEKEAFHEAGYDSLLTATI 417
Query: 321 FAQACSHLGIDFKQQSSSENLA 342
+ + LG + +++ S N+A
Sbjct: 418 MIRLAAKLGAEHEKKHPS-NIA 438
>gi|260810923|ref|XP_002600172.1| hypothetical protein BRAFLDRAFT_66680 [Branchiostoma floridae]
gi|229285458|gb|EEN56184.1| hypothetical protein BRAFLDRAFT_66680 [Branchiostoma floridae]
Length = 441
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 16/180 (8%)
Query: 176 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
A+ ++ +GF HV L+ +K +VGHN +D+ +Y K + PLP ++F ++ F
Sbjct: 177 ADRALDYMLGFSHVFRTLTQTRKPVVGHNMLMDLMLLYGKMYKPLPEKYDQFKRDIHVLF 236
Query: 236 PHIIDTK-ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQ-PSVKVEVE 293
P I DTK I L + S+ L + + L K + L P+V E
Sbjct: 237 PCIYDTKHIAAELKKPLAEFGVLQSSILQELYDALN-----SHKGRFMVLHSPAVVPAAE 291
Query: 294 VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL----GIDFKQQSSSENLAHNEKLRE 349
D N HEAGYD++M G VF + SHL GI +Q + E +R
Sbjct: 292 CDRYT----NESHPHEAGYDSYMAGYVFIRM-SHLQTMQGISAQQPVPPRFRRYLEVMRR 346
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNST 37
+FL + FDFN ++EGV YL ++QE KH+ T
Sbjct: 55 FEFLCDHNFDFNEFVYEGVPYLDQDQEKHLRKHLEQT 91
>gi|401408295|ref|XP_003883596.1| hypothetical protein NCLIV_033510 [Neospora caninum Liverpool]
gi|325118013|emb|CBZ53564.1| hypothetical protein NCLIV_033510 [Neospora caninum Liverpool]
Length = 751
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 108/260 (41%), Gaps = 47/260 (18%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPD 62
FL + FDFN + +GV +L ++E KE R I D
Sbjct: 156 FLRENGFDFNQWLDQGVPFLRAQEE----------------------KEKRQALQVRIDD 193
Query: 63 ILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFET---------IFFKMRPAIS 113
+ + + R G +R+ E S + + N + + R +
Sbjct: 194 LEHLIKHRSR-----GATMRDAQESSSLLDTTNAEDRDLAASARASIQAWLASSTREPLH 248
Query: 114 LNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESD--KKMLMKEVKDE 171
L + Q LL+ +V F L L V + V+ +SE + ++ L +D
Sbjct: 249 LPVESPLQRLLLHSLVASEFPSLYSLSV---KLGDRRVLAIYQSEEEVYEEQLRGLREDI 305
Query: 172 QKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSV 231
QK++ E+ G R ++D +S K L++GHNCF D HI+ + LP + EF ++
Sbjct: 306 QKVE-ELR-----GVRQLLDDISDHKLLVIGHNCFYDFLHIFQTLYADLPQSVSEFKTAW 359
Query: 232 NKYFPHIIDTKILLNSNSIL 251
+ FP DTK++ S+ +L
Sbjct: 360 TQLFPSTFDTKLIAESHDVL 379
>gi|189207410|ref|XP_001940039.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976132|gb|EDU42758.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 634
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/374 (22%), Positives = 142/374 (37%), Gaps = 105/374 (28%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPD 62
FL FD A +GV YLSRE+ ++A + ++++ LKE ++
Sbjct: 116 FLLNNGFDLGAPFAKGVQYLSREEAERAKQMAWDRLDNKNPIPDLQLKE------EDVES 169
Query: 63 ILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQL 122
+ F R+++ + W + D + +PA+ + T +
Sbjct: 170 LDFMRRIREAIKTWKTSKALHLDVTTHTG--------------LPDKPAMPV--ITRFEK 213
Query: 123 LLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKA 182
L+ +VR F +L + G + C + V + E+D M+ +K+ + SI
Sbjct: 214 RLVHQLVRAEFPELVTI---GRSECVRIVDLDPVREADN---MRRIKNRVR----ESIVR 263
Query: 183 SIGFRHV----------------------------------------IDLLSSEKKLIVG 202
GFR V ++ L +++ ++VG
Sbjct: 264 QTGFRWVFEALVKGGAVDRADLLYVARTTGMPMTADMYAIRDRYDRAVERLKTKQPVLVG 323
Query: 203 HNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-------LNSNSILQQRM 255
HN F DI ++Y F G LP T + F +++ FP IIDTK L LN++ LQ
Sbjct: 324 HNMFTDIVYLYRTFVGQLPDTLQGFQDAIHGLFPKIIDTKYLATHAEGDLNASPTLQ--- 380
Query: 256 KKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAF 315
IA+ L QP + D + ++ HEAGYD+
Sbjct: 381 ----------------DIAM-----RLNTQPLPHIITHADYPKYQ--DTEAFHEAGYDSL 417
Query: 316 MTGCVFAQACSHLG 329
+T + + + LG
Sbjct: 418 LTATIMIKLAAKLG 431
>gi|71663249|ref|XP_818620.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70883881|gb|EAN96769.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 517
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 63/139 (45%), Gaps = 8/139 (5%)
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
+GFR + L+ KK I+GHN +LDI + PLP E+F V++ FP I DTK
Sbjct: 241 LGFRQIWKCLTKCKKPIIGHNFWLDIMFMLHMHEAPLPTMYEDFKKQVHELFPCIYDTKT 300
Query: 244 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 303
L S ++ ++ K L + C S P E +
Sbjct: 301 L--SKTMFFSKLNK-CYHLDDLYKECCKINKESKDSIVFRFPPGFHFYDE-----KCLGS 352
Query: 304 SGVKHEAGYDAFMTGCVFA 322
G HEAGYDA+MTG VFA
Sbjct: 353 EGKAHEAGYDAYMTGIVFA 371
>gi|327300148|ref|XP_003234767.1| hypothetical protein TERG_05358 [Trichophyton rubrum CBS 118892]
gi|326463661|gb|EGD89114.1| hypothetical protein TERG_05358 [Trichophyton rubrum CBS 118892]
Length = 560
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 22/151 (14%)
Query: 193 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 252
L S ++VGHN F D+ + Y F G LP E+F ++N+ FP +IDTK + +L
Sbjct: 317 LRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDFQQTINELFPLVIDTKYMATIGGVL- 375
Query: 253 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY 312
+ +S++LS LGS++ K E D SS S HEAGY
Sbjct: 376 ---RDASSALSTLME------NLGSRAVP-------KFETHPD--HSSYTVSTPVHEAGY 417
Query: 313 DAFMTGCVFAQACSHLGIDFKQQSSSENLAH 343
D+ MT +F + L ++ SS E L +
Sbjct: 418 DSLMTAQIFLKLAVKL---YETSSSREALVN 445
>gi|19112846|ref|NP_596054.1| CAF1 family ribonuclease (predicted) [Schizosaccharomyces pombe
972h-]
gi|74676190|sp|O94386.1|YGS9_SCHPO RecName: Full=Uncharacterized protein C29A10.09c
gi|4007797|emb|CAA22437.1| CAF1 family ribonuclease (predicted) [Schizosaccharomyces pombe]
Length = 427
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 139/327 (42%), Gaps = 44/327 (13%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL + FDFN + EGV YLSR +E + VN D D S+ + D
Sbjct: 108 IKFLIQQGFDFNKQLTEGVPYLSRIEERNLIDKVNERSTD---DLTSSILDACDE----- 159
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFK-MRPAISLNGFTS 119
+IL R +++ WL L S + SK T + +R AI
Sbjct: 160 -EILVDAR--NQIKNWLSSEL-----------SHSTSKYLNITTSNRFIRKAI------- 198
Query: 120 HQLLLIQLVVRKHFKDLAYLRV--SGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE 177
L+ I+ K + +L+V + ENS +Q S + K L +++ +Q I
Sbjct: 199 QSLVKIEFPTLKSYPKRTFLQVRKAIENSTTQC------SATSKSELKEDIASDQLILNN 252
Query: 178 MS-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP 236
++ IK ++G RH+ D + +KK +V HN D+ +++S F G +P T EF F
Sbjct: 253 LNLIKQNVGLRHLWDYILKKKKSVVCHNGMADLVYLFSLFEGKVPETILEFSELCLSSFK 312
Query: 237 HIIDTKILLNSNSILQQRMKKSSTSLSKAFS-VLCPQIALGSKSTHLALQPSVKVEVEVD 295
I DTK+L + LQ T L S + P + S S + + +E
Sbjct: 313 SIYDTKLLYLKSDDLQHVSDGIPTDLLSLVSKISLPPVPSNSSSQRSNVSLNSLIECPYK 372
Query: 296 DIRSSNWNSGVKHEAGYDAFMTGCVFA 322
+ S HEAG D++ T +F
Sbjct: 373 SMMSRKR----PHEAGKDSYDTALLFV 395
>gi|358374410|dbj|GAA91002.1| CAF1 family ribonuclease [Aspergillus kawachii IFO 4308]
Length = 869
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 187 RHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLN 246
R V L + ++VGHN F D+ + FFGPLP E+F + +K FP ++DTK +
Sbjct: 314 RRVKQRLQKNRPILVGHNLFTDLIYFCRCFFGPLPDRVEDFQAMAHKMFPVLMDTKYMAT 373
Query: 247 SNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNS-G 305
N + P+ +L + LA QP+ + + + + +N+
Sbjct: 374 HNC-----------------GSINPRSSLQEINDSLAAQPTPAISIHP---QFTKYNTRA 413
Query: 306 VKHEAGYDAFMTGCVFAQACSHL 328
+ HEAG+D+ +T VF + + L
Sbjct: 414 IDHEAGFDSLLTAQVFIKLSAQL 436
>gi|303314657|ref|XP_003067337.1| CAF1 family ribonuclease containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240107005|gb|EER25192.1| CAF1 family ribonuclease containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037661|gb|EFW19598.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 583
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/368 (21%), Positives = 138/368 (37%), Gaps = 92/368 (25%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHL--F 58
+D L + F +A +GV Y+SRE+E A V D L + + +
Sbjct: 117 IDLLLRSGFRMDAPFIDGVPYISREEEGMAKARVR--------DRQSRLAAMDNINFDSL 168
Query: 59 NIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
+ + F E + +++W+ S + K+++ I + + + G
Sbjct: 169 DTESMAFLEEARRLINDWV---------------SKPNRKEEYVNIPSAEKRSANQPGIN 213
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
++Q LI +VR + DL S + + V I K+ L V++ +
Sbjct: 214 NYQKRLIHQLVRSEYPDLV--------SIGRAMFVQIVKYDKKREL--NVQEGRMRQVRE 263
Query: 179 SIKASIGFRHVIDLLS--------------------------------------SEKKLI 200
I GFR +++ ++ S++ ++
Sbjct: 264 RIYNQTGFRWIVEAMTGGDLSRLSSDSVADSSRDPHGRKQKAFGHIDYLQAKLKSKRLVL 323
Query: 201 VGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSST 260
VGHN F D+ + Y F G LP EEF+ +V++ FP I+DTK L + S
Sbjct: 324 VGHNIFTDLVNFYKCFIGGLPDKVEEFLGNVHELFPMIVDTKYLATHDC--------GSA 375
Query: 261 SLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCV 320
S A L +S P+ + + + + HEAGYD+ MT V
Sbjct: 376 LPSSALEEL-------DESLRFRELPTFTTDAQ----HTKYVDEKPVHEAGYDSLMTARV 424
Query: 321 FAQACSHL 328
F + S L
Sbjct: 425 FLRLASQL 432
>gi|212529996|ref|XP_002145155.1| CAF1 family ribonuclease, putative [Talaromyces marneffei ATCC
18224]
gi|212529998|ref|XP_002145156.1| CAF1 family ribonuclease, putative [Talaromyces marneffei ATCC
18224]
gi|210074553|gb|EEA28640.1| CAF1 family ribonuclease, putative [Talaromyces marneffei ATCC
18224]
gi|210074554|gb|EEA28641.1| CAF1 family ribonuclease, putative [Talaromyces marneffei ATCC
18224]
Length = 561
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 147/361 (40%), Gaps = 70/361 (19%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALK--HVNSTYEDESLDSWHSLKEIRDTHLF 58
+ FL K FD NA EGV YLS ++E K L+ H +++ E+ + + RD
Sbjct: 114 VQFLLKSGFDLNAPFQEGVHYLSTKEEKKVLEDAHQHNSGRSETGTTAQMVLSKRDRE-- 171
Query: 59 NIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAI-SLNGF 117
+ F ++ + WL + R E V PS + + + RPA SLN F
Sbjct: 172 ---SVAFLADVRKDIEAWLS-VGEGRREYLNV-PSRDATSRN-------GRPATTSLNRF 219
Query: 118 TSHQLLLIQLVVRKHFKDLA------YLRVSGENSCSQNVIVYIESESDKKMLMKEVKDE 171
Q L+ +V + L Y+R+ + ++ I + +K L++
Sbjct: 220 ---QKRLVHQLVETEYPSLTSIGCPDYIRIVKYDKEREDRIRREKLNRVEKRLLELRGFR 276
Query: 172 QKIDA---------------------EMSIKASIGFRHVIDLLSSEKKLI--VGHNCFLD 208
I+A E A+ ++ ID L S+ I VGHN F+D
Sbjct: 277 WVIEALTGGDLSQLTPQAFHPLVGVVEEEEDAAAYWKRTIDALKSKNGRIPLVGHNLFMD 336
Query: 209 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFS- 267
+ +++ F+G LP EEF +++ FP +IDTK + ++ S ++KA +
Sbjct: 337 VVYLWQCFYGYLPDQVEEFARLLHEKFPMLIDTKYIF-THDCGDMNPVASLDDIAKACNH 395
Query: 268 VLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 327
+ P+I + SK T N HEAGYD+ +T F +
Sbjct: 396 ITKPEIIINSKHTRYQ-------------------NKTCPHEAGYDSLLTAQNFIKQAVQ 436
Query: 328 L 328
L
Sbjct: 437 L 437
>gi|397598041|gb|EJK57139.1| hypothetical protein THAOC_22852 [Thalassiosira oceanica]
Length = 742
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 156/371 (42%), Gaps = 69/371 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTY---EDE-SLDSWHSLKEIRDTH 56
+ FL DFN EGVSY + +Q + ++ Y EDE + ++ H+ +
Sbjct: 179 IQFLLGNNMDFNKVFAEGVSYTTVDQAEAMMEKHFEKYGRKEDEKAKEASHTPSKRGGVK 238
Query: 57 LFNIPDILFAERMKDRLSEWL-----------------GGLL---RNRDEGSEV-QPSFN 95
L + DI F R+ L EW+ GL+ R+ DEG+ V P N
Sbjct: 239 LSRVEDIAFCARVIAGLREWIDSDIQPGAYPNPAGAVTAGLVHENRDADEGTAVVLPPCN 298
Query: 96 D--SKQQFETIFFKMRPAISLN--------GFTSHQLLLIQLVVRKHFKDLAYLRVSGEN 145
+ +E+I + P++ L G S+Q+ +++L + + LR
Sbjct: 299 AFLRRALYESIQGEY-PSLILERADQGQNAGPRSNQIRVMRLSPEEKERRDTRLRREAWE 357
Query: 146 SCSQNV---IVY--IESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLI 200
+V I++ I + K+ KE I +D S K +
Sbjct: 358 KILGDVGFTILFQAISDACNGKVFSKEQTKSFLNGTSPDIS--------VDGKGSNKIPL 409
Query: 201 VGHNCFLDIAHIYSKFFGP-LPLTAEEFISSVNKYFPHIIDTKILLN--SNSILQQRMKK 257
+ HN +D+ + + P LP + EE +++ YFP I+DTKIL S+SI+ K
Sbjct: 410 IIHNGLMDLMFLITHCHDPTLPESFEETKATIRSYFPRIVDTKILAGEYSDSII----KG 465
Query: 258 SSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMT 317
+ L F+V+ + + S T A P++ S+ +S HEA YDA+MT
Sbjct: 466 GKSDLGSLFNVITSEREM-SWITFKA--PTI----------SNGESSQQAHEAAYDAYMT 512
Query: 318 GCVFAQACSHL 328
GCVF C +
Sbjct: 513 GCVFNGLCDRI 523
>gi|407394491|gb|EKF26952.1| ribonuclease, putative [Trypanosoma cruzi marinkellei]
Length = 590
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 142/334 (42%), Gaps = 41/334 (12%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSL--KEIRDTHLF 58
+ FL ++ DF + +++G++Y QE+ K Y + LDS H+ +E+ L
Sbjct: 118 LAFLRRHDMDFQSWVYQGMAYCDANQEEALRKRHEEKYRE--LDSIHNEGNQEVEGVSLL 175
Query: 59 NIPD-------ILFAERMKDRLSEWL-GGLLRNRDEGS---EVQPSFNDSKQQFETIFFK 107
+ + A+ +R+ L +RN + + EV + + + +F
Sbjct: 176 TEEEKKWYDNAVTLAQAFSERIQAALEKAKVRNAGQTAGMVEVSAALDLIQSGGREVFLP 235
Query: 108 MRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKE 167
+ G ++ + L + V +HF L+ L + + ++ + E ++
Sbjct: 236 PQ-----RGKSAREAL--ERHVEQHFHKLS-LTFRRQGAVYMGILRAVFPEERNRL---- 283
Query: 168 VKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEF 227
++++++ E + +GFR V L +K VGHNC D+ + + GPLP + EF
Sbjct: 284 -REKEQVFREGELMNMLGFRLVFKALVESRKPCVGHNCLADLLFLLASLDGPLPESLPEF 342
Query: 228 ISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQ-- 285
+N+ FP + DTK + + +Q+ ++ S L + S + H+ L
Sbjct: 343 KRRMNELFPIVFDTKYIAS-----RQQFFPLERFGARYLSGLFGEYGFRSANAHVTLPLG 397
Query: 286 -----PSVKVEVEVDDIRSSNWNSGVKHEAGYDA 314
P E + ++N G HEAGYDA
Sbjct: 398 FESYDPLAVGGGERHNSSAAN-AGGPTHEAGYDA 430
>gi|349806239|gb|AEQ18592.1| putative protein polyA-specific ribonuclease (deadenylation
nuclease) [Hymenochirus curtipes]
Length = 188
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 18/149 (12%)
Query: 166 KEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAE 225
+ ++ +Q D E ++ ++GF +I +S+ KL+VGHN LD+ H +FF LP
Sbjct: 1 ERIEQQQAKDRE-ELEDAVGFSRIIQAISTSGKLVVGHNMLLDVMHTIHQFFCQLPDDLN 59
Query: 226 EFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQ 285
EF N FP ++DTK++ ++N F + +L L
Sbjct: 60 EFKEVTNCVFPRVLDTKLMASTN----------------PFKEIIYNTSLAELEKRLKDS 103
Query: 286 PSVKVEVE-VDDIRSSNWNSGVKHEAGYD 313
P +V+ D +S N S HEAGYD
Sbjct: 104 PFKPPKVDGADGFQSHNTASEQLHEAGYD 132
>gi|322802707|gb|EFZ22924.1| hypothetical protein SINV_00082 [Solenopsis invicta]
Length = 486
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 143/347 (41%), Gaps = 87/347 (25%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FL Y FDFN ++G+SYL E+ + + ++++ S KE D
Sbjct: 109 LEFLTVYGFDFNKLAYQGISYLDEVDEEFLQQQIQKNTLLDNVEQSISYKEEED------ 162
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
KD ++ L L DE DS FK+ T
Sbjct: 163 --------FKDTATQILEWLKTASDE--------TDS--------FKIESC------TPT 192
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+Q +RK F ++ SG N + ++ + ES ++ML +E E I + +
Sbjct: 193 MQYFMQKTLRKRFSNI--WTFSGNNMIT---VIKVPPES-RRMLEQE---EGSILENVLL 243
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
++ IGF V LL + KK I+ HN LD ++ +F+ PLP K+
Sbjct: 244 ESYIGFSKVFKLLVTLKKPIIAHNPLLDFMFMHQQFYKPLP----------QKW------ 287
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
N++L + + +T+ K + P + L + + ++DDI S
Sbjct: 288 ------KNNVLSELVTHFTTNQGKRIPLGSPVVELANSN-------------KLDDIAVS 328
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGID--FKQQSSSENLAHNE 345
H AG+DA+ +G +F + +HL + ++Q SS++ H E
Sbjct: 329 K----KYHTAGWDAYFSGYIFIR-LAHLFVSKRYEQSISSKHFTHTE 370
>gi|71043644|ref|NP_001020895.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1
[Rattus norvegicus]
gi|68533833|gb|AAH99137.1| Poly(A)-specific ribonuclease (PARN)-like domain containing 1
[Rattus norvegicus]
Length = 341
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 50/243 (20%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y FD+N + G+ Y++ EQE K +KH +W + +
Sbjct: 112 VQFLNQYGFDYNKFLKNGIPYMNEEQE-KKIKHSILR------GNWRVRSSLDKDQI--- 161
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ + D++++WL +EG + ++L G +
Sbjct: 162 ------KVVIDKVTQWLD----LAEEGDQ----------------------MTLPGISGF 189
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ ++ L+ G VIV S+ + L D+ E
Sbjct: 190 QAFEVQLVLRQALPNIWTVLKEEG-------VIVKKVSQPHRWYLEHASCDQVTCWKEQI 242
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN D+ H++ KFF PLP + ++F +++ FP +I
Sbjct: 243 LLSARGFSVFFQMLVKAQKPLVGHNMMTDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLI 302
Query: 240 DTK 242
DTK
Sbjct: 303 DTK 305
>gi|392869996|gb|EAS28542.2| CAF1 family ribonuclease [Coccidioides immitis RS]
Length = 587
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/368 (22%), Positives = 137/368 (37%), Gaps = 92/368 (25%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHL--F 58
+D L + F +A +GV Y+SRE+E A V D L + + +
Sbjct: 121 IDLLLRSGFRMDAPFIDGVPYISREEEGMAKARVR--------DRQTRLAAMDNINFDSL 172
Query: 59 NIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
+ + F E + +++W+ S + K+++ I + + + G
Sbjct: 173 DTESMAFLEEARRLINDWV---------------SKPNRKEEYVNIPSAEKRSANQPGIN 217
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
++Q LI +VR + DL S + + V I K+ L V++ +
Sbjct: 218 NYQKRLIHQLVRSDYPDLV--------SIGRAMFVQIVKYDKKREL--NVQEGRMRQVRE 267
Query: 179 SIKASIGFRHVIDL--------------------------------------LSSEKKLI 200
I GFR +++ L S++ ++
Sbjct: 268 RIYNQTGFRWIVEAITGGDLSRLSSDAFADSSRDPHGRKQKAFGHIDYLQAKLKSKRLVL 327
Query: 201 VGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSST 260
VGHN F D+ + Y F G LP EEF+ +V++ FP I+DTK L + S
Sbjct: 328 VGHNIFTDLVNFYKCFIGGLPDKVEEFLGNVHELFPMIVDTKYLATHDC--------GSA 379
Query: 261 SLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCV 320
S A L +S P+ + + + + HEAGYD+ MT V
Sbjct: 380 LPSSALEEL-------DESLRFRELPTFTTDAQ----HTKYVDEKPVHEAGYDSLMTARV 428
Query: 321 FAQACSHL 328
F + S L
Sbjct: 429 FLRLVSQL 436
>gi|308504273|ref|XP_003114320.1| hypothetical protein CRE_27458 [Caenorhabditis remanei]
gi|308261705|gb|EFP05658.1| hypothetical protein CRE_27458 [Caenorhabditis remanei]
Length = 565
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 109/232 (46%), Gaps = 30/232 (12%)
Query: 115 NGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKI 174
+GF+S ++ ++ + F + + + +NS + NV + E KM E K++ ++
Sbjct: 199 SGFSSVEICMVIHELTNAFPQFVF-KFNSQNS-TLNVAMLPE-----KMTETENKNQTRL 251
Query: 175 DAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKY 234
S + G +++ +K+IVGHN LD ++Y FF PLP F +
Sbjct: 252 RCSESFE---GISAILEAAMMMRKVIVGHNSLLDAMYLYHYFFAPLPQNYNAFKRQFHGL 308
Query: 235 FPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV-- 292
FP IIDTK++ S I + S L F G++ ++ + P ++ +
Sbjct: 309 FPKIIDTKLIAQSLRIELPGVGDSLEKLGDYF---------GTEKSNKTVPPELRGYIGP 359
Query: 293 ---EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENL 341
+DD S N V H AG+D+++TG VF + +H I+ K +E+L
Sbjct: 360 WMNPLDD-DSEN----VYHNAGFDSYITGEVFLK-LAHTYINRKNNLKNESL 405
>gi|429861252|gb|ELA35948.1| caf1 family ribonuclease [Colletotrichum gloeosporioides Nara gc5]
Length = 619
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 25/163 (15%)
Query: 193 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 252
L ++ IVGHN F D+ IY FF LP + EF +++ + FPHIIDTK++ ++ ++
Sbjct: 391 LQLQRPPIVGHNQFFDLLFIYQTFFDDLPASCGEFFANIYELFPHIIDTKLMAIADQAIE 450
Query: 253 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY 312
L+ F + +PS+ + R +N HEAGY
Sbjct: 451 -----GEDPLADIFDRFIGDVC----------RPSIGWDPAHGYSRRAN-----AHEAGY 490
Query: 313 DAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLY 355
D+FMT + + L + + +N+ E + + LY
Sbjct: 491 DSFMTAVILLRLAHKLA-----RRTLDNVDEGESWDKKMRRLY 528
>gi|71649930|ref|XP_813674.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878580|gb|EAN91823.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 517
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
+GFR + L+ KK I+GHN +LDI + PLP E+F V++ FP I DTK
Sbjct: 241 LGFRQIWKCLTKCKKPIIGHNFWLDIMFMLHMHEAPLPARYEDFKKQVHELFPCIYDTKT 300
Query: 244 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 303
L S ++ ++ K L + C +I SK +A Q + S
Sbjct: 301 L--SKTMFFSKLNK-CYHLDDLYKECC-KINKESKDL-IAFQFPPGFHFYDEKCIGS--- 352
Query: 304 SGVKHEAGYDAFMTGCVFA 322
G HEAGYDA+MTG VFA
Sbjct: 353 EGKAHEAGYDAYMTGIVFA 371
>gi|325185583|emb|CCA20066.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 656
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH------ 237
IGF ++D + IVGHN LD+ + Y KF+ PLP T EF +S+ ++
Sbjct: 337 IGFTTIMDWILESNTPIVGHNLLLDLLYCYEKFYQPLPNTCAEFSASLLQWMKRDKDDST 396
Query: 238 ----IIDTKILLNS--NSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVE 291
I DTK +L + + Q + TSL AF ++ G + L V+
Sbjct: 397 LQNVIYDTKDMLTTVQEELDQFADRLECTSLPHAFEIVSKHPFYGPTIQSITLTDFVQRF 456
Query: 292 VEVDDIRSSNWNSGV------KHEAGYDAFMTGCVFAQACSHLG 329
+ I S + + H+AG+DAF TG +F + C LG
Sbjct: 457 PLSEAINSIKFTAKSTPKICGAHQAGHDAFATGYLFTRLCCALG 500
>gi|431904573|gb|ELK09955.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Pteropus alecto]
Length = 446
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 35/235 (14%)
Query: 112 ISLNGFTSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD 170
++L G Q +QLV+R+ D+ LR Q VIV S+ + L D
Sbjct: 143 MTLPGIAGFQAFEVQLVLRQALPDIWTVLR-------DQGVIVKKVSKQHRWYLENTSCD 195
Query: 171 EQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISS 230
+ E + ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +
Sbjct: 196 RESCWKEKILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKLN 255
Query: 231 VNKYFPHIIDTK------------ILLNSNSILQQRMKKSSTSLSKAFS----VLCPQ-- 272
++ FP +IDTK +LL +L R+ + + +F VL P
Sbjct: 256 IHNLFPVLIDTKNVTKDIWKPFFAVLLKVAHLLLWRVHSAGSIPEPSFPLYLDVLAPYVN 315
Query: 273 ----IALGSKSTHLAL--QPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVF 321
I G + + PS + + + +R W GV + Y F C F
Sbjct: 316 QVNLIRAGVPKINFSGPDHPSTRPPILILSVRK--W-PGVTEQQVYREFQNLCKF 367
>gi|307203543|gb|EFN82576.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Harpegnathos saltator]
Length = 355
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 51/224 (22%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
M+FLA+++FDFN H + Y+ EQE + L+ + ++T ++NI
Sbjct: 109 MEFLAEHEFDFNKLAHHSIPYID-EQEKEILQQ----------------QIQQNTLIYNI 151
Query: 61 PDIL-FAER--MKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGF 117
++ F E +K+ ++E L N DE + FK++ + +
Sbjct: 152 KQVISFTEEDTLKNTINEVAKWLATNIDETNS----------------FKIKTSSPNLQY 195
Query: 118 TSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE 177
H+ L RKHF ++ L SG S + I+ E + + ++ E +E I
Sbjct: 196 LMHKEL------RKHFPNIWTL--SGNESVT-----VIKVEPNTREILSE--EEDLILEN 240
Query: 178 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLP 221
+++ +GF V +LL + KK I+GHN LD+ +Y +F+ PLP
Sbjct: 241 ALLESYMGFSKVFNLLVTLKKPIIGHNVLLDLMFMYQQFYKPLP 284
>gi|296816132|ref|XP_002848403.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238841428|gb|EEQ31090.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 545
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 24/152 (15%)
Query: 193 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 252
L + ++VGHN F D+ + Y F G LP E+F ++++ FP ++DTK + +L+
Sbjct: 298 LRAGPPVLVGHNLFTDLVNFYKCFIGDLPGRVEDFQQAIHELFPVVVDTKYMATHGGVLR 357
Query: 253 QRMKKSSTSLSKAFSVLCP-QIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAG 311
AFS L LG++ E D S+ + +HEAG
Sbjct: 358 D-----------AFSALSKLNETLGAREVP---------NFETDSEHSAYIANAPQHEAG 397
Query: 312 YDAFMTGCVFAQACSHLGIDFKQQSSSENLAH 343
YD+ +T VF + L F+ +S E L H
Sbjct: 398 YDSLITAQVFLKLAVQL---FETSTSREALIH 426
>gi|238502431|ref|XP_002382449.1| hypothetical protein AFLA_002480 [Aspergillus flavus NRRL3357]
gi|220691259|gb|EED47607.1| hypothetical protein AFLA_002480 [Aspergillus flavus NRRL3357]
Length = 375
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 22/147 (14%)
Query: 187 RHVIDL---LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
R+++ L L + + ++VGHN F D+ ++Y FFGPLP EEF + V+ FP ++DTK
Sbjct: 119 RYLVKLQQRLRTHRPVLVGHNLFTDVVYLYRCFFGPLPDKLEEFQAIVHHMFPILMDTKY 178
Query: 244 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHL--ALQPSVKVEVEVDDIRSSN 301
+ + + P+ +L + +L P + E I S
Sbjct: 179 MATHDC-----------------GSITPKSSLSEINDNLLHIKTPKISAENASPYIHSKY 221
Query: 302 WNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ + HEAGYD+ +T +F + + L
Sbjct: 222 NSQRIDHEAGYDSLLTAQIFIKLSAQL 248
>gi|407929029|gb|EKG21868.1| Ribonuclease CAF1 [Macrophomina phaseolina MS6]
Length = 667
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 193 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 252
L + +VGHN F DI ++Y F GPLP T EEF ++++FP ++DTK + N
Sbjct: 308 LQRRRPALVGHNLFTDIIYLYRTFIGPLPPTLEEFRVLIHQHFPLVVDTKYMATHNC--- 364
Query: 253 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY 312
+ P+ +L + H L+ K + S + HEAGY
Sbjct: 365 --------------GDINPKSSL--EEIHNKLRAQAKPLIVTHAAHSKYHVAEPLHEAGY 408
Query: 313 DAFMTGCVFAQACSHL 328
D+FMT + + + L
Sbjct: 409 DSFMTALIMIRLSTKL 424
>gi|345569256|gb|EGX52124.1| hypothetical protein AOL_s00043g514 [Arthrobotrys oligospora ATCC
24927]
Length = 474
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 116/268 (43%), Gaps = 49/268 (18%)
Query: 77 LGGLLRNRDEGSEVQ--------PSFNDSKQQFETIFFKMR---PAISLN-----GFTSH 120
+ GL R RDE + + P D + Q + K R P LN G+ +
Sbjct: 159 IKGLKRQRDEADKKEIEPKEEDLPMLEDVRSQI-IGWIKRRESDPFDFLNIQRDAGYNGY 217
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
Q +I +R+ F D Y + E +V + ++ +++K D QK+ +
Sbjct: 218 QRRIISQFIRREFPD--YNGIWYERHLQ---VVPYNGDRERNIVLKREDDFQKV-----L 267
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
K G RH+ID + KK ++GHN F D+ ++++ F G P +F + + F I+D
Sbjct: 268 KVQRGVRHLIDKIMELKKPLIGHNLFTDLVYMHNMFIGDPPEDINDFRRFLQQSFGLIVD 327
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TK L ++ + K+S S S P+ LG + +H+ +DD
Sbjct: 328 TKFL----ALHCKETNKNSASSS------LPE--LGYRLSHMTYP-------HIDDFPV- 367
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHL 328
N+ H AGYDA+ T F + + L
Sbjct: 368 --NTEQNHVAGYDAWCTARSFVKLSAIL 393
>gi|255956365|ref|XP_002568935.1| Pc21g19440 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590646|emb|CAP96841.1| Pc21g19440 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 542
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 136/351 (38%), Gaps = 67/351 (19%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
M+FL F + GV YLSRE+E A+K E S H + ++ D +
Sbjct: 97 MEFLLANHFSIDHMCTFGVRYLSREEEKLAIKRAT-----EKCLSRHPV-QVADIKKDDH 150
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
+ F E ++ ++EWL RD + PS ++ P G +S
Sbjct: 151 ESLEFLEAVRVSINEWLAQGENRRDWLNIPPPSS-----------VQLIPGPIPTGLSSM 199
Query: 121 QLLLIQLVVRKHFKDLAY----------LRVSGENSCSQNVIVYIESESDKKML------ 164
Q LI +V + +L R G + + ++ E +K +
Sbjct: 200 QKWLIHHLVSDEYPNLTSRGASTFVQIEFRDPGNEQYTFESKLKVKKERVRKHIGFRWIA 259
Query: 165 -------MKEVKDEQKIDAEMSI--KASIGFRHVID----LLSSEKKLIVGHNCFLDIAH 211
++E++ + M I + + G + + D L + ++VGHN F D+
Sbjct: 260 EALVGGSLEELEPDAFHPLMMRIIEQPTFGIQQLADKVKNRLKESRPVLVGHNMFCDLLF 319
Query: 212 IYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 271
Y F GPLP T EF + ++ FP + DTK + + L P
Sbjct: 320 FYRCFLGPLPDTLAEFQTVIHDLFPVLADTKYMATHDC-----------------GSLNP 362
Query: 272 QIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK-HEAGYDAFMTGCVF 321
+L +T LA S K+E+ D R + + HEAGYD+ + F
Sbjct: 363 MSSLEELNTTLAGIESPKIEI---DPRFGKYKFRKRTHEAGYDSMLAAMAF 410
>gi|239607406|gb|EEQ84393.1| CAF1 family ribonuclease [Ajellomyces dermatitidis ER-3]
Length = 533
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/360 (21%), Positives = 143/360 (39%), Gaps = 66/360 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
++FL K F A EG+ YLSR +E A+ + ES +S + +I+ ++ +
Sbjct: 31 VEFLIKNGFRMEAPFVEGLPYLSRLEEQLAMTKLA-----ESENSTAKIADIKPENM-DP 84
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
F +++ + W+ + +++E + R A++ S+
Sbjct: 85 ESHTFVAKVRGLIDSWIDEI-GDKEEYLNIPEPGGLENGNMAGPLGSWRFALN-----SY 138
Query: 121 QLLLIQLVVRKHFKDLA-------------------YLRVSGENSCSQNVIVYIE----- 156
Q L+ +VR + L Y+RV + + ++ +
Sbjct: 139 QKRLVHQLVRAEYPSLVSISRKTFVQIIPYNKQREEYIRVDKWRTLRERIVQQMGFRWIV 198
Query: 157 --------SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLD 208
S D ++ + + D +DAE S R L S + ++VGHN F D
Sbjct: 199 EGMVGGDLSAMDPRVFLPCIPDSATVDAEALSNYSDDLRSK---LKSRQPVLVGHNLFTD 255
Query: 209 IAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 268
+ + Y F G LP E+F +++ FP +IDTK + N S
Sbjct: 256 LINFYKCFIGNLPDRIEDFKEAIHSLFPLVIDTKYMATHNC-----------------SS 298
Query: 269 LCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ P +L + +LA++ + K+ ++ + + HEAGYD+ +T V + + L
Sbjct: 299 VTPSSSLAEINDNLAMRKTPKIFIDPEHDKYV--GQKPLHEAGYDSLLTAKVLIKLTAEL 356
>gi|403330912|gb|EJY64371.1| Putative poly [Oxytricha trifallax]
Length = 1969
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 25/158 (15%)
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
+GF VI + KK IVGHN DI IY++F G LP + ++F + +FP DTK+
Sbjct: 362 VGFTRVIGTMVKSKKPIVGHNLMFDICFIYNQFCGDLPDSFKDFYTLWKLFFPETYDTKV 421
Query: 244 LLNSNSILQ-----------QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV 292
L S ++ Q KK + +L F V S V
Sbjct: 422 LAESTTLFPKSELQNVYRKCQCDKKLNNNLDIKFDV--------------KADSSFGVYQ 467
Query: 293 EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 330
D+ S + H+AG+DA+MTG F ++ I
Sbjct: 468 IFDENASQSQVVDKGHDAGFDAYMTGYSFLTVAKYIEI 505
>gi|350631915|gb|EHA20284.1| hypothetical protein ASPNIDRAFT_121560 [Aspergillus niger ATCC
1015]
Length = 559
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 187 RHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLN 246
R V L + ++VGHN F D+ + FFGPLP E+F + ++ FP ++DTK +
Sbjct: 314 RGVKQRLQKNRPVLVGHNLFTDLIYFCRCFFGPLPDRVEDFQAMAHEMFPVLMDTKYMAT 373
Query: 247 SNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNS-G 305
N + P+ +L + LA QP+ + + + + +N+
Sbjct: 374 HNC-----------------GSINPRSSLQEINDSLAKQPTPAISIHP---QFTKYNTRA 413
Query: 306 VKHEAGYDAFMTGCVFAQACSHL 328
+ HEAG+D+ +T VF + + L
Sbjct: 414 IDHEAGFDSLLTAQVFIKLSAQL 436
>gi|317038388|ref|XP_001402264.2| CAF1 family ribonuclease [Aspergillus niger CBS 513.88]
Length = 559
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 187 RHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLN 246
R V L + ++VGHN F D+ + FFGPLP E+F + ++ FP ++DTK +
Sbjct: 314 RGVKQRLQKNRPVLVGHNLFTDLIYFCRCFFGPLPDRVEDFQAMAHEMFPVLMDTKYMAT 373
Query: 247 SNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNS-G 305
N + P+ +L + LA QP+ + + + + +N+
Sbjct: 374 HNC-----------------GSINPRSSLQEINDSLAKQPTPAISIHP---QFTKYNTRA 413
Query: 306 VKHEAGYDAFMTGCVFAQACSHL 328
+ HEAG+D+ +T VF + + L
Sbjct: 414 IDHEAGFDSLLTAQVFIKLSAQL 436
>gi|302835828|ref|XP_002949475.1| hypothetical protein VOLCADRAFT_120753 [Volvox carteri f.
nagariensis]
gi|300265302|gb|EFJ49494.1| hypothetical protein VOLCADRAFT_120753 [Volvox carteri f.
nagariensis]
Length = 570
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 13/170 (7%)
Query: 177 EMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP 236
EM ++ S GF V+D+L + +VGHN LD+A+ S+F G LP + + + + FP
Sbjct: 373 EMLVEQS-GFSQVLDVLRDAGRPLVGHNASLDLAYTLSQFNGVLPRNWRAYKALLQRAFP 431
Query: 237 -HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVD 295
+ DTK + + ++ + + L+ + L + L + + L ++ V
Sbjct: 432 GGLYDTKHI--ATQLIAAGVPVGDSGLANLYRTLMDEQWLRAHVPGVGLPATLGGGVP-- 487
Query: 296 DIRSSNWNSGV-------KHEAGYDAFMTGCVFAQACSHLGIDFKQQSSS 338
+IR + +G HEAG+DAFMTG F + + Q+SS
Sbjct: 488 EIRHAPGFAGYVGASVEKAHEAGFDAFMTGAAFTRLLRFVAAKVAMQASS 537
>gi|341887681|gb|EGT43616.1| hypothetical protein CAEBREN_31154 [Caenorhabditis brenneri]
Length = 549
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 149/353 (42%), Gaps = 68/353 (19%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSR---EQEDKALKHVNSTYEDESLDSWHSLKEIRDTHL 57
+ FL +FD N EGV Y +R + DKALK ED +L S KEI+
Sbjct: 103 LRFLRNNKFDLNQVFSEGVEYCTRAEFQNFDKALK------EDTALRSVS--KEIQ---- 150
Query: 58 FNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKM--RPAISL- 114
I E L +L + +E N +++ + + F + +SL
Sbjct: 151 LQI--------------ELLKVMLHEKCYIAETDMITNSTEEPMQEVRFSLIGNKPVSLK 196
Query: 115 --NGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQ 172
G ++ +I + K F + E +C+ V S+K E ++
Sbjct: 197 ITQGLCCVEICMIIHELTKAFPQFTF--KMDEKNCALKV-------SNKPEFTTEAENIN 247
Query: 173 KIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVN 232
+ S +A G +++ + +K+IVGHN LD ++Y FF LP + F +
Sbjct: 248 QTRVRCS-EAFEGISAILEAVMMMRKVIVGHNSLLDTMYLYHYFFERLPEKYQTFKRKFS 306
Query: 233 KYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV 292
FP +IDTKIL +L+ + SL + G++ ++ + P ++ +
Sbjct: 307 ALFPKVIDTKIL---AQVLRLELPGVGDSLERLGDY------FGTEKSNKTVPPELRGYI 357
Query: 293 -----EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI----DFKQQS 336
+DD S N V H AG+D+++TG VF + +H I DFK +S
Sbjct: 358 GPWMNPLDD-DSEN----VYHNAGFDSYITGEVFLKL-AHTYINRKNDFKNES 404
>gi|157869668|ref|XP_001683385.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68126450|emb|CAJ04256.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 598
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GFR V L +K VGHNCF D + S G LP ++ + + FP I DT+
Sbjct: 297 TVGFRLVFTELVKSRKPCVGHNCFADWLFLMSAMDGALPEQLPQWKARTRELFPCIWDTR 356
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIR-SSN 301
L + + + S SL + LG+ S+H ++ + E E D +
Sbjct: 357 YLASRRDLFPS-GRFGSISLGGLH-----EAYLGA-SSHCTVELPLGFE-EYDPVTLLGR 408
Query: 302 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSS--SENLA 342
NS HEAGYDA MTG V +G + + S+ LA
Sbjct: 409 GNSDAAHEAGYDALMTGTVLLNLLGEVGYTLETAPAELSQKLA 451
>gi|327352392|gb|EGE81249.1| CAF1 family ribonuclease [Ajellomyces dermatitidis ATCC 18188]
Length = 493
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 22/172 (12%)
Query: 157 SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKF 216
S D ++ + + D +DAE S R L S + ++VGHN F D+ + Y F
Sbjct: 167 SAMDPRVFLPCIPDSATVDAEALSNYSDDLRSK---LKSRQPVLVGHNLFTDLINFYKCF 223
Query: 217 FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALG 276
G LP E+F +++ FP +IDTK + N S + P +L
Sbjct: 224 IGNLPDRIEDFKEAIHSLFPLVIDTKYMATHNC-----------------SSVTPSSSLA 266
Query: 277 SKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ +LA++ + K + +D HEAGYD+ +T V + + L
Sbjct: 267 EINDNLAMRKTPK--IFIDPEHDKYVGEKPLHEAGYDSLLTAKVLIKLTAEL 316
>gi|221488487|gb|EEE26701.1| CAF1 ribonuclease family protein [Toxoplasma gondii GT1]
Length = 1022
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 185 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 244
G R ++D +S +K L+VGHNCF D HI+ + LP + EF ++ + FP DTK++
Sbjct: 602 GVRQLLDDVSDQKLLVVGHNCFYDFLHIFQTLYADLPQSVSEFKTTWTQLFPATFDTKLI 661
Query: 245 LNSNSIL 251
S+ L
Sbjct: 662 AESHDAL 668
>gi|237837885|ref|XP_002368240.1| poly(A)-specific ribonuclease, putative [Toxoplasma gondii ME49]
gi|211965904|gb|EEB01100.1| poly(A)-specific ribonuclease, putative [Toxoplasma gondii ME49]
gi|221508992|gb|EEE34561.1| CAF1 ribonuclease family protein [Toxoplasma gondii VEG]
Length = 1022
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 185 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 244
G R ++D +S +K L+VGHNCF D HI+ + LP + EF ++ + FP DTK++
Sbjct: 602 GVRQLLDDVSDQKLLVVGHNCFYDFLHIFQTLYADLPQSVSEFKTTWTQLFPATFDTKLI 661
Query: 245 LNSNSIL 251
S+ L
Sbjct: 662 AESHDAL 668
>gi|119174987|ref|XP_001239804.1| hypothetical protein CIMG_09425 [Coccidioides immitis RS]
Length = 424
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 193 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 252
L S++ ++VGHN F D+ + Y F G LP EEF+ +V++ FP I+DTK L +
Sbjct: 157 LKSKRLVLVGHNIFTDLVNFYKCFIGGLPDKVEEFLGNVHELFPMIVDTKYLATHDC--- 213
Query: 253 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY 312
S S A L +S P+ + + + + HEAGY
Sbjct: 214 -----GSALPSSALEEL-------DESLRFRELPTFTTDAQ----HTKYVDEKPVHEAGY 257
Query: 313 DAFMTGCVFAQACSHL 328
D+ MT VF + S L
Sbjct: 258 DSLMTARVFLRLVSQL 273
>gi|115534690|ref|NP_506169.2| Protein K10C8.1 [Caenorhabditis elegans]
gi|83764264|emb|CAA98954.2| Protein K10C8.1 [Caenorhabditis elegans]
Length = 566
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 10/157 (6%)
Query: 185 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 244
G ++ ++ KL+VGHN LD ++Y FF LP + F N FP I+DTK+L
Sbjct: 260 GVSAILQVVHMTGKLVVGHNSLLDAMYMYHYFFSHLPANYQMFKDKFNALFPRIMDTKLL 319
Query: 245 LNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNS 304
+ + S +L F GS + + P ++ +E + +
Sbjct: 320 AQALRFELPGVGDSLENLGDYF---------GSDKSDKTVPPELRGFIEPWMNPLEDESE 370
Query: 305 GVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENL 341
V H AG+D+++TG VF + +H+ I+ + +E L
Sbjct: 371 NVYHNAGFDSYVTGEVFLK-LAHIYINRRNNFKNEIL 406
>gi|357621648|gb|EHJ73417.1| hypothetical protein KGM_05205 [Danaus plexippus]
Length = 394
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 46/242 (19%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPD 62
FL + FD+N ++G+ Y+SR +E H K++++ L N +
Sbjct: 111 FLCLHNFDYNKFTYDGLPYMSRSEEA------------------HIKKQLKEKTLLN--N 150
Query: 63 ILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQL 122
++ A M D + + SEV +S +TI+ + I
Sbjct: 151 LIQAMEMNDER--------KLQSYCSEVAKWLVNSTD--DTIYLDIDNPI--------MR 192
Query: 123 LLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKA 182
++ +R F ++ G S V++Y + D E + I
Sbjct: 193 YIVHCELRNRFPEVLTTDSLGN---SHKVLIYRNGDVDGATSASMSTLEGNL-----ITY 244
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
+GF +I+LL+ KK I+GHN +LD ++S+F GPLP F ++N FP++ DTK
Sbjct: 245 VLGFSQIIELLAEYKKPIIGHNMYLDTLLLHSQFIGPLPKRYSAFKKNINNLFPNMYDTK 304
Query: 243 IL 244
+
Sbjct: 305 YI 306
>gi|268556560|ref|XP_002636269.1| Hypothetical protein CBG08556 [Caenorhabditis briggsae]
Length = 564
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 25/181 (13%)
Query: 152 IVYIESESDKKM---LMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSE---KKLIVGHNC 205
+++ +E DK + ++ E E + + ++ + F + +L + +K+IVGHN
Sbjct: 220 LLFSLNEKDKSLDVTMLPETMTETENKKQTRMRCTESFEGISAILEAAMMMRKVIVGHNS 279
Query: 206 FLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKA 265
LD ++Y FF LPL F N FP +IDTKIL I + S L
Sbjct: 280 LLDAMYMYHYFFSSLPLKYRNFKREFNSLFPKVIDTKILAQVIRIDLPGVGDSLERLGDY 339
Query: 266 FSVLCPQIALGSKSTHLALQPSVKVEV-----EVDDIRSSNWNSGVKHEAGYDAFMTGCV 320
F G++ ++ + P ++ + +DD S N+ H AG+D+++TG V
Sbjct: 340 F---------GTEKSNKTVPPELRGYIGPWMNPLDD-DSENY----YHNAGFDSYITGEV 385
Query: 321 F 321
F
Sbjct: 386 F 386
>gi|347840116|emb|CCD54688.1| hypothetical protein [Botryotinia fuckeliana]
Length = 354
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 21/151 (13%)
Query: 189 VIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSN 248
VI L ++ +IVGHN F D+ +Y F G LP +F S ++ FP +IDTK L N
Sbjct: 66 VIKKLKEKQHVIVGHNLFTDLCFLYKTFIGDLPAGVGDFQSQIHSLFPFVIDTKYLATYN 125
Query: 249 SILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKH 308
S MK V ++ + + H+ P + + + ++ ++N N+ H
Sbjct: 126 S---DAMKP---------RVNLKELLIPFQRIHM---PLILLHEKHNNYSATNGNA---H 167
Query: 309 EAGYDAFMTGCVFAQACSHLGIDFKQQSSSE 339
EAG+D++MT + + + L + +QS S+
Sbjct: 168 EAGFDSWMTAELLVKLSAQL---YAEQSDSQ 195
>gi|154337822|ref|XP_001565137.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062184|emb|CAM36572.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 592
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 21/171 (12%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GFR V L +K VGHNCF D + S G LP ++ + + FP + DT+
Sbjct: 292 TVGFRLVFTELVKSRKPCVGHNCFADWLFLMSAMDGALPEQLPQWKARARELFPCMWDTR 351
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEV-----DDI 297
L + + + R + + SL G ++ P VE+ + D +
Sbjct: 352 YLASRHDLF-PRSRFDNISLG------------GLHEAYMGASPHCTVELPLGFEGYDPV 398
Query: 298 R-SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKL 347
S HEAGYDA MTG V G + +++ L+H L
Sbjct: 399 TLLGRGGSNAAHEAGYDALMTGTVLLNLLGEAG--YTLETAPAELSHKLAL 447
>gi|156033193|ref|XP_001585433.1| hypothetical protein SS1G_13672 [Sclerotinia sclerotiorum 1980]
gi|154699075|gb|EDN98813.1| hypothetical protein SS1G_13672 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 588
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 20/141 (14%)
Query: 189 VIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSN 248
VI L ++ +IVGHN F D+ +Y F G LP +F S ++ FP +IDTK L N
Sbjct: 311 VIKTLKKKQHVIVGHNLFTDLCFLYKTFIGTLPAGVGDFQSQIHSLFPFVIDTKYLATYN 370
Query: 249 SILQQRMKKSSTSLSKAFSVLCPQIALGSK-STHLALQPSVKVEVEVDDIRSSNWNSGVK 307
S L V P I L K +T+ + +G
Sbjct: 371 SDAMNPRVNLKELLIPFQKVHMPLILLHEKHNTYGGV-------------------NGKS 411
Query: 308 HEAGYDAFMTGCVFAQACSHL 328
HEAG+D++MT +F + + L
Sbjct: 412 HEAGFDSWMTAELFVKLSAKL 432
>gi|83282387|ref|XP_729748.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23488425|gb|EAA21313.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 771
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 123 LLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKA 182
LL ++ K+F + + V + +N+ +Y +++K +++K Q ++ E I
Sbjct: 375 LLAHTLITKYFNSIFCISVKLNDK--KNLAIY---KTEKDSYNEQIKALQ-MEIE-KINE 427
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
+IG R + D + K+++GHNCF DI HIY F+ LP + F + FP+ +DTK
Sbjct: 428 TIGVRLLFDEIIKSNKILIGHNCFYDILHIYQTFYHELPDSIHAFKRKWTELFPYTVDTK 487
Query: 243 ILLNSNSIL 251
+ +N L
Sbjct: 488 YMNETNEYL 496
>gi|401422399|ref|XP_003875687.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491926|emb|CBZ27199.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 596
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 63/153 (41%), Gaps = 19/153 (12%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GFR V L +K VGHNCF D + S G LP ++ + + FP + DT+
Sbjct: 297 TVGFRLVFTELVKSRKPCVGHNCFADWLFLMSAMDGALPEQLPQWKARARELFPCMWDTR 356
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEV-----DDI 297
L + + + S SLS G +L P VE+ + D +
Sbjct: 357 YLASRRDLFPG-GRFGSISLS------------GLHEAYLGASPHCTVELPLGFEGYDPV 403
Query: 298 R-SSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 329
S HEAGYDA MTG V +G
Sbjct: 404 TLLGRGGSDAAHEAGYDALMTGTVLLNLLGEVG 436
>gi|261200489|ref|XP_002626645.1| CAF1 family ribonuclease [Ajellomyces dermatitidis SLH14081]
gi|239593717|gb|EEQ76298.1| CAF1 family ribonuclease [Ajellomyces dermatitidis SLH14081]
Length = 493
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 26/174 (14%)
Query: 157 SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKF 216
S D ++ + + D +DAE S R L S + ++VGHN F D+ + Y F
Sbjct: 167 SAMDPRVFLPCIPDSATVDAEALSNYSDDLRSK---LKSRQPVLVGHNLFTDLINFYKCF 223
Query: 217 FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALG 276
G LP E+F +++ FP +IDTK + N S + P +L
Sbjct: 224 IGNLPDRIEDFKEAIHSLFPLVIDTKYMATHNC-----------------SSVTPSSSLA 266
Query: 277 SKSTHLALQ--PSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ +LA++ P + ++ E D HEAGYD+ +T V + L
Sbjct: 267 EINDNLAMRKTPKIFIDPEHDKYVVEK----PLHEAGYDSLLTAKVLIKLTVEL 316
>gi|68074807|ref|XP_679320.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56500041|emb|CAI00347.1| conserved hypothetical protein [Plasmodium berghei]
Length = 761
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
I +IG R + D + K+++GHNCF DI HIY F+ LP + F + FP+ +
Sbjct: 414 INETIGVRLLFDEIIKSNKILIGHNCFYDILHIYQTFYHELPDSIHVFKRKWTELFPYTV 473
Query: 240 DTKILLNSNSIL 251
DTK + +N L
Sbjct: 474 DTKYMNETNEYL 485
>gi|367049582|ref|XP_003655170.1| hypothetical protein THITE_155482 [Thielavia terrestris NRRL 8126]
gi|347002434|gb|AEO68834.1| hypothetical protein THITE_155482 [Thielavia terrestris NRRL 8126]
Length = 513
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 24/138 (17%)
Query: 193 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 252
+ + +IVGHN FLD+ I F PLP F + ++FP ++DTK L +S L
Sbjct: 319 IKQRRPVIVGHNPFLDLCFIQETFLRPLPDDVAAFRRDMGEFFPRVVDTKYL---SSQLG 375
Query: 253 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGY 312
R ++ L K +G S + P D R G H AG+
Sbjct: 376 FRTGRNLEQLYK---------LVGQGSVPITPMPGY-------DAR-----DGSAHNAGF 414
Query: 313 DAFMTGCVFAQACSHLGI 330
D++MT VF +G+
Sbjct: 415 DSWMTAAVFVSLSRKIGL 432
>gi|406865319|gb|EKD18361.1| CAF1 family ribonuclease [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 578
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 26/142 (18%)
Query: 189 VIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSN 248
V L + + LIVGHN F D+A ++ F G LP+ + F ++ FP +IDTK + N
Sbjct: 311 VTTTLRTHRPLIVGHNLFADLAFLFRTFVGHLPVNVKHFQEDIHALFPRVIDTKYVATYN 370
Query: 249 SILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEV----DDIRSSNWNS 304
+ + P++ L L P K + ++ +
Sbjct: 371 T-----------------DAMNPRVGLKD-----LLAPFRKTHTPLIVLHENHTAYGAGF 408
Query: 305 GVKHEAGYDAFMTGCVFAQACS 326
G +HEAG+D++MT +F + +
Sbjct: 409 GKEHEAGFDSWMTAELFVKLAA 430
>gi|378729834|gb|EHY56293.1| poly(A)-specific ribonuclease [Exophiala dermatitidis NIH/UT8656]
Length = 667
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/373 (19%), Positives = 140/373 (37%), Gaps = 122/373 (32%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL + F+ + I +GV YLSR++E++ K + ED D NI
Sbjct: 150 VSFLIRNGFNIDRPILQGVQYLSRQEEEQVRKKL---LED-------------DQARANI 193
Query: 61 PDILF-------AERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAIS 113
PD++ E ++ + +W Q + + ++ + I +
Sbjct: 194 PDMILKEDDSPLVEHIRQSIKDW--------------QATPKEKQEPYVNIPAENAKEPL 239
Query: 114 LNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQK 173
+Q+ L VVR + L + G Q E ++++K + +++++ +
Sbjct: 240 PAALNRYQVRLTHQVVRNEYPKL---KTQGMGHFVQITNPTAEQQANEKEVREQIREREV 296
Query: 174 IDAEMSIKASIGFRHVIDL-------------------------------------LSSE 196
++A +GFR +I+ L S+
Sbjct: 297 LNA-------VGFRWIIEAIMGGDVSRMPHRYVQAAHPEGKAPDNIQGFLDDLQAKLKSQ 349
Query: 197 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMK 256
++ +GHNC D+ ++Y F LP E+F + V + FP I+DTK +
Sbjct: 350 QRAFIGHNCLTDLINLYRCFVDNLPERVEDFSARVQELFPLILDTKYI------------ 397
Query: 257 KSSTSLSKAFSVLCPQIALGSKS-THLALQPSVKVEVEVDDIRSSNWNSG--------VK 307
LG+K +LQ +V+ +++ D+ + G
Sbjct: 398 ----------------AGLGNKRWADTSLQ-AVETDIDTLDVPRFTFAPGFDRYLHTSTY 440
Query: 308 HEAGYDAFMTGCV 320
HEAG+D+++T +
Sbjct: 441 HEAGFDSYVTAKI 453
>gi|261332931|emb|CBH15926.1| ribonuclease, putative [Trypanosoma brucei gambiense DAL972]
Length = 509
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 185 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 244
GF+H L+ KK IVGHN +LDI + GPLP + + V++ FP + DTK L
Sbjct: 237 GFQHFWKCLTDCKKPIVGHNFWLDIMFMVQMHEGPLPEDYDTYKRLVHQLFPCVYDTKTL 296
Query: 245 LNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNS 304
++ + +S L ++ LG ++ P + D + S
Sbjct: 297 --GREVIINNLSESFCLKDLYDRCLASRLKLG-RAPEFFFPPGFG-RYDPDSLESEC--- 349
Query: 305 GVKHEAGYDAFMTGCVFA 322
HEAGYD++MTG F+
Sbjct: 350 -KAHEAGYDSYMTGVAFS 366
>gi|168019851|ref|XP_001762457.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686190|gb|EDQ72580.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 594
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP-HI 238
++ S GF +V+ L++ K IVGHN LD+A++Y +F G LP T +EF + V FP +
Sbjct: 270 LERSKGFANVMQCLTTCNKPIVGHNMLLDLAYLYQQFIGTLPPTLDEFRAHVKLLFPGGV 329
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ 272
DTK L +L +TSL + + L P+
Sbjct: 330 YDTKYLAEFFPVLL-----PATSLEELHTSLAPK 358
>gi|71413865|ref|XP_809055.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70873378|gb|EAN87204.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 590
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 168 VKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEF 227
+++++++ E + +GFR V + L +K VGHNC D+ + + GPLP + +F
Sbjct: 283 LREKEQVFREGELMNMLGFRLVFNALVESRKPCVGHNCLADLLFLLASLDGPLPDSLPKF 342
Query: 228 ISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPS 287
+N+ FP + DTK + + +Q+ ++ S L + S + H+ L
Sbjct: 343 KRRMNELFPIVFDTKYIAS-----RQQFFPLERFGARYLSGLFGEYGFRSANAHVTLPLG 397
Query: 288 VKVEVEV-----DDIRSSNWNS-GVKHEAGYDA 314
+ + + SS N+ G HEAGYDA
Sbjct: 398 FESYDPLAVGGGERHHSSGVNAGGPTHEAGYDA 430
>gi|72392633|ref|XP_847117.1| ribonuclease [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62176010|gb|AAX70132.1| ribonuclease, putative [Trypanosoma brucei]
gi|70803147|gb|AAZ13051.1| ribonuclease, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 586
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 22/197 (11%)
Query: 125 IQLVVRKHFKDLAY-LRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKAS 183
+Q + +HF+D++ R SG +++ ++ ++L KE ++ +M
Sbjct: 248 LQRHIAQHFQDISLTFRRSGSTYHGTFKVLFPGEQA--RILEKECALRERELVDM----- 300
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
+GFR V L K VGHNC D+ + + G LP EF V + FP + DTK
Sbjct: 301 LGFRLVFKALVESSKPCVGHNCLADVLFLLASLDGELPAALPEFKHRVVQLFPKVFDTKY 360
Query: 244 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDI------ 297
+ + + + S L+ F + S + ++L + E D +
Sbjct: 361 IASRQDLFPA-GRFGSRYLAGYFD----ECGFCSANVRVSLPLGFE---EYDPLKLSSVG 412
Query: 298 RSSNWNSGVKHEAGYDA 314
RS+ N HEAGYDA
Sbjct: 413 RSAGGNGAPVHEAGYDA 429
>gi|71665029|ref|XP_819489.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70884792|gb|EAN97638.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 590
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 139/335 (41%), Gaps = 43/335 (12%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSL--KEIRDTHLF 58
+ FL ++ +F + +++G++Y QE+ + Y + LDS H+ +E+ L
Sbjct: 118 LAFLRRHDMNFQSWVYQGMAYCDANQEEALRQRHEEKYRE--LDSIHNEGNQEVEGVSLL 175
Query: 59 NIPD-------ILFAERMKDRLSEWL-GGLLRNRDEGS---EVQPSFNDSKQQFETIFFK 107
+ ++ A+ +R+ L ++N + + EV + + + +F
Sbjct: 176 TEEEKKWYDNAVILAKAFSERIQAALEQAKVKNAGQTAGMVEVSAALDLIQSGGREVFLP 235
Query: 108 -MRPAISLNGFTSHQLLLIQLVVRKHF-KDLAYLRVSGENSCSQNVIVYIESESDKKMLM 165
R + + H V +HF K L R G V+ E +
Sbjct: 236 PQRSKSARDALERH--------VEQHFHKLLLTFRRQGAVYIGMLRAVFPEERN------ 281
Query: 166 KEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAE 225
++++++ E + +GFR V + L +K VGHNC D+ + + GPLP +
Sbjct: 282 -RLREKEQAFREGELMNMLGFRLVFNALVESRKPCVGHNCLADLLFLLASLDGPLPDSLP 340
Query: 226 EFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQ 285
+F +N+ FP + DTK + + +Q+ ++ S L + S + H+ L
Sbjct: 341 KFKRRMNELFPTVFDTKYIAS-----RQQFFPLERFGARYLSGLFGEYGFRSANAHVTLP 395
Query: 286 PSVKVEVEV-----DDIRSSNWNS-GVKHEAGYDA 314
+ + + SS N+ G HEAGYDA
Sbjct: 396 LGFESYDPLAVGGGEHHHSSGANAGGPTHEAGYDA 430
>gi|340057431|emb|CCC51777.1| putative ribonuclease [Trypanosoma vivax Y486]
Length = 508
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 8/139 (5%)
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
+GF + L KK ++GHN +LDI + P+P T ++ V++ FP I DTK
Sbjct: 237 VGFLNFWKCLVLCKKPVIGHNFWLDIMFMVQMHEAPIPETYGKYKEFVHQLFPFIYDTKT 296
Query: 244 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 303
L + L +R ++ LS + C + S L + P + D +S N+
Sbjct: 297 L---SQQLDKRNLFKTSHLSCLYKEYC-DLNRESADPILFVSPPGH---DTYDPKSPNFV 349
Query: 304 SGVKHEAGYDAFMTGCVFA 322
S HEAGYD++MTG VF+
Sbjct: 350 SKA-HEAGYDSYMTGVVFS 367
>gi|71748030|ref|XP_823070.1| ribonuclease [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|70832738|gb|EAN78242.1| ribonuclease, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 509
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 185 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 244
GF+H L+ KK IVGHN +LDI + GPLP + + V++ FP + DTK L
Sbjct: 237 GFQHFWKCLTDCKKPIVGHNFWLDIMFMVQMHEGPLPEDYDTYKRLVHQLFPCVYDTKTL 296
Query: 245 LNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNS 304
++ + +S L ++ LG + P + D + S
Sbjct: 297 --GREVIINNLSESFCLKDLYDRCLASRLKLGG-APEFFFPPGFG-RYDPDSLESEC--- 349
Query: 305 GVKHEAGYDAFMTGCVFA 322
HEAGYD++MTG F+
Sbjct: 350 -KAHEAGYDSYMTGVAFS 366
>gi|444727164|gb|ELW67669.1| Poly(A)-specific ribonuclease PARN [Tupaia chinensis]
Length = 642
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 110/273 (40%), Gaps = 53/273 (19%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GF VI +++ KL++GHN LD+ H +F+ PLP
Sbjct: 194 AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPAD------------------- 234
Query: 243 ILLNSNSI--LQQRMKKSSTSLSKAFSVLC-PQIALGSKSTH----------LALQPSVK 289
L+N+ S+ L++R+K++ + K S P S+ H L
Sbjct: 235 -LINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMAN 293
Query: 290 VEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLRE 349
+ S + S HEAGYDA++TG F + LG F A ++ +
Sbjct: 294 FLESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLG-SFLSPPKIHVSARSKLIEP 352
Query: 350 HVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIR 409
N L+L ++++ N L +++H V+ FP K D+
Sbjct: 353 FFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLY 397
Query: 410 ECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
+ S +G I + +D+T+ FV S+ E V
Sbjct: 398 QLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 426
>gi|261330312|emb|CBH13296.1| ribonuclease, putative [Trypanosoma brucei gambiense DAL972]
Length = 586
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 22/197 (11%)
Query: 125 IQLVVRKHFKDLAY-LRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKAS 183
+Q + +HF+D++ R SG +++ ++ ++L KE ++ +M
Sbjct: 248 LQRHIAQHFQDISLTFRRSGSTYHGTFKVLFPGEQA--RILEKESALRERELVDM----- 300
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
+GFR V L K VGHNC D+ + + G LP EF V + FP + DTK
Sbjct: 301 LGFRLVFKALVESSKPCVGHNCLADVLFLLASLDGELPAALPEFKHRVVQLFPKVFDTKY 360
Query: 244 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDI------ 297
+ + + + S L+ F + S + ++L + E D +
Sbjct: 361 IASRQDLFPA-GRFGSRYLAGYFD----EYGFCSANVRVSLPLGFE---EYDPLTLSSVE 412
Query: 298 RSSNWNSGVKHEAGYDA 314
RS+ N HEAGYDA
Sbjct: 413 RSAGGNGAPVHEAGYDA 429
>gi|407868227|gb|EKG08788.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 590
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 11/153 (7%)
Query: 168 VKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEF 227
++++++ E + +GFR V + L +K VGHNC D+ + + GPLP + +F
Sbjct: 283 LREKEQAFREGELMNMLGFRLVFNALVESRKPCVGHNCLADLLFLLASLDGPLPDSLPKF 342
Query: 228 ISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPS 287
+N+ FP + DTK + + +Q+ ++ S L + S + H+ L
Sbjct: 343 KRRMNELFPIVFDTKYIAS-----RQQFFPLERFGARYLSGLFGEYGFRSANAHVTLPLG 397
Query: 288 VKVEVEV-----DDIRSSNWNS-GVKHEAGYDA 314
+ + + SS N+ G HEAGYDA
Sbjct: 398 FESYDPLAVGGGERHHSSGANAGGPTHEAGYDA 430
>gi|154290929|ref|XP_001546053.1| hypothetical protein BC1G_15528 [Botryotinia fuckeliana B05.10]
Length = 406
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 116/295 (39%), Gaps = 77/295 (26%)
Query: 2 DFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIP 61
+FL FD A GV YLS ++E +A + D+ ++ ++ I +F+
Sbjct: 120 NFLQSNGFDIGAVFTMGVPYLSEQEEVEARERY-----DQRIERNAAIPSI----VFDPS 170
Query: 62 DI---LFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
D+ F R + ++EW+ E E + +F + P LNGF
Sbjct: 171 DVGTLEFYRRARSSITEWI--------EAKEPKMTFVNVDN----------PKGPLNGF- 211
Query: 119 SHQLLLIQLVVRKHFK--------DLAYLRVS------GENSCSQNVI------------ 152
Q L+ +VR F D ++++V +CS N
Sbjct: 212 --QRRLVHQLVRSEFPQCRCFARSDGSFMQVEMIDHDREARACSSNFFNPFKIEQLKKFN 269
Query: 153 VYIESESDKKMLMKEV--KDEQKIDAEMSIK-------ASIGFRH---------VIDLLS 194
I ++S + + + + D ID S K S+ H VI L
Sbjct: 270 QRIATQSGARFIFEALCGGDLIGIDPMWSYKHDENAQPDSVDSSHATLEAELTKVIKKLK 329
Query: 195 SEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNS 249
++ +IVGHN F D+ +Y F G LP +F S ++ FP +IDTK L NS
Sbjct: 330 EKQHVIVGHNLFTDLCFLYKTFIGDLPAGVGDFQSQIHSLFPFVIDTKYLATYNS 384
>gi|302855310|ref|XP_002959151.1| hypothetical protein VOLCADRAFT_108501 [Volvox carteri f.
nagariensis]
gi|300255470|gb|EFJ39774.1| hypothetical protein VOLCADRAFT_108501 [Volvox carteri f.
nagariensis]
Length = 987
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 25/133 (18%)
Query: 201 VGHNCFLDIAHIYSKFF-GPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQ--RMKK 257
VGHNC D+A+ S+F G LP T E F +V +F L ++ I +Q +
Sbjct: 538 VGHNCMFDVAYGISQFGEGRLPATWEGFKRAVAHWF-----RGGLYDTKHICRQLPELLG 592
Query: 258 SSTSLSKAFSVLCPQIALGSKSTHLALQPSVK--------VEVEVDDIRSSNWNSGVKHE 309
S T L+ + L PQ ++ S + L + S+ V V ++ HE
Sbjct: 593 SDTMLAVMYGSLVPQNSVTSGTGPLPARVSISHARGFEKYVAVAAGEL---------AHE 643
Query: 310 AGYDAFMTGCVFA 322
AGYDAFMTG VFA
Sbjct: 644 AGYDAFMTGSVFA 656
>gi|225555913|gb|EEH04203.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 522
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 22/156 (14%)
Query: 176 AEMSIKASIGFRHVIDL---LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVN 232
A ++ S R+ DL L S + ++VGHN F D+ + Y F G LP E+F ++++
Sbjct: 213 APVNTSTSALLRYSDDLQLKLKSRQPVLVGHNLFTDLINFYKCFIGDLPDRIEDFKNAIH 272
Query: 233 KYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV 292
FP +IDTK + N SS + S + + + ++ ++ + L P V
Sbjct: 273 ALFPLVIDTKYMATHNC--------SSMTPSSSLTEINDKLE-QRRTPRILLDPEHDKYV 323
Query: 293 EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ + HEAGYD+ +T V + + L
Sbjct: 324 DEKPL----------HEAGYDSLLTAKVLIRLAAEL 349
>gi|325090486|gb|EGC43796.1| CAF1 family ribonuclease [Ajellomyces capsulatus H88]
Length = 522
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 22/156 (14%)
Query: 176 AEMSIKASIGFRHVIDL---LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVN 232
A ++ S R+ DL L S + ++VGHN F D+ + Y F G LP E+F ++++
Sbjct: 213 APVNTSTSALLRYSDDLQLKLKSRQPVLVGHNLFTDLINFYKCFIGDLPDRIEDFKNAIH 272
Query: 233 KYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV 292
FP +IDTK + N SS + S + + + ++ ++ + L P V
Sbjct: 273 ALFPLVIDTKYMATHNC--------SSMTPSSSLTEINDKLE-QRRTPRILLDPEHDKYV 323
Query: 293 EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ + HEAGYD+ +T V + + L
Sbjct: 324 DEKPL----------HEAGYDSLLTAKVLIRLAAEL 349
>gi|240278594|gb|EER42100.1| CAF1 family ribonuclease [Ajellomyces capsulatus H143]
Length = 535
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 22/156 (14%)
Query: 176 AEMSIKASIGFRHVIDL---LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVN 232
A ++ S R+ DL L S + ++VGHN F D+ + Y F G LP E+F ++++
Sbjct: 226 APVNTSTSALLRYSDDLQLKLKSRQPVLVGHNLFTDLINFYKCFIGDLPDRIEDFKNAIH 285
Query: 233 KYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV 292
FP +IDTK + N SS + S + + + ++ ++ + L P V
Sbjct: 286 ALFPLVIDTKYMATHNC--------SSMTPSSSLTEINDKLE-QRRTPRILLDPEHDKYV 336
Query: 293 EVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ + HEAGYD+ +T V + + L
Sbjct: 337 DEKPL----------HEAGYDSLLTAKVLIRLAAEL 362
>gi|146087155|ref|XP_001465741.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398015556|ref|XP_003860967.1| hypothetical protein, conserved [Leishmania donovani]
gi|134069841|emb|CAM68168.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322499191|emb|CBZ34262.1| hypothetical protein, conserved [Leishmania donovani]
Length = 601
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 21/168 (12%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GFR V L + +K VGHNCF D + S LP ++ + + FP + DT+
Sbjct: 297 TVGFRLVFTELVNSRKPCVGHNCFADWLFLMSAMDSTLPEQLPQWKARARELFPCMWDTR 356
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEV-----DDI 297
L + + + S SL G +L P VE+ + D +
Sbjct: 357 YLASRRDLFPS-GRFGSISLG------------GLHEAYLGASPHCIVELPLGFEGYDPV 403
Query: 298 R-SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSS--SENLA 342
S HEAGYDA MTG V +G + + S+ LA
Sbjct: 404 TLLGRGGSDAAHEAGYDALMTGTVLLNLLGEVGYTLETAPAELSQKLA 451
>gi|410960341|ref|XP_003986750.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Felis catus]
Length = 681
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 190 IDLLSSEKKLI--VGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNS 247
+D L ++++ + VGHN D+ H++ KFF PLP + ++F +++ FP +IDTK + +
Sbjct: 401 VDALPAKRRSVPLVGHNMMTDLLHLHEKFFRPLPESYDQFKLNIHNLFPVLIDTKNV--T 458
Query: 248 NSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK 307
I ++ ++LS+ + VL + S + + S K E + +
Sbjct: 459 KDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIIHAS-KCEKYAE--------TKYP 509
Query: 308 HEAGYDAFMTGCVFAQACSHL 328
HEA YDAF+ G V + +HL
Sbjct: 510 HEAAYDAFLCGSVLLKV-AHL 529
>gi|348561225|ref|XP_003466413.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Cavia porcellus]
Length = 535
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 133/352 (37%), Gaps = 104/352 (29%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + +G+ Y++ EQE K +KH T +W ++R T
Sbjct: 112 VQFLNQYGFNYNKFLKKGIPYMNEEQEKK-IKHSILT------GNW----KVRST----- 155
Query: 61 PDILFAERMK---DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGF 117
L +++K D ++ WL L + D+ I+L G
Sbjct: 156 ---LDKDQVKVVIDEVTRWLD-LAKEGDQ-------------------------ITLPGM 186
Query: 118 TSHQLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDA 176
+ +QLV+R+ ++ LR Q VIV S + L D
Sbjct: 187 AGFRAFEVQLVLRQALPNIWTVLR-------DQEVIVKKVSLQHRWYLEHASGDRDSCWK 239
Query: 177 EMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP 236
E + ++ GF +L +K +VGHN +D+ H++ KFF PLP P
Sbjct: 240 EEILLSARGFSVFFQMLVQAQKPLVGHNMMMDLLHLHEKFFRPLP-------------GP 286
Query: 237 HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDD 296
++ + +++ L P + L P V +EV +
Sbjct: 287 EVMGSH---------PDSEGRTTVELQAG-----PLVHLSPVWVQELHFPRVSNLLEVYE 332
Query: 297 IRSSNWN--------------------SGVKHEAGYDAFMTGCVFAQACSHL 328
+ SSN N + HEAGYDAF+ G V + +HL
Sbjct: 333 VLSSNLNPTKDSAPVIVHGNKCEKYAKTKYPHEAGYDAFLCGSVLLKV-AHL 383
>gi|193785796|dbj|BAG51231.1| unnamed protein product [Homo sapiens]
Length = 351
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 96/238 (40%), Gaps = 37/238 (15%)
Query: 206 FLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKA 265
LD+ H +F+ PLP EF FP ++DTK++ + ++
Sbjct: 2 LLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQP 45
Query: 266 FSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQA 324
F + +L L P +VE + S + S HEAGYDA++TG F
Sbjct: 46 FKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISM 105
Query: 325 CSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNH 384
++LG F A ++ + N L+L ++++ N L +++H
Sbjct: 106 ANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM----RVMDIPYLNLEGPDL--QPKRDH 158
Query: 385 YPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
V+ FP K D+ + S +G I + +D+T+ FV S+ E V
Sbjct: 159 ---------VLHVTFPKEWKTSDLYQLFS-AFG---NIQISWIDDTSAFVSLSQPEQV 203
>gi|83771094|dbj|BAE61226.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871094|gb|EIT80260.1| hypothetical protein Ao3042_03277 [Aspergillus oryzae 3.042]
Length = 205
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 193 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 244
L + + ++VGHN F D+ ++Y FFGPLP EEF + V+ FP ++DTK +
Sbjct: 111 LRTHRPVLVGHNLFTDVVYLYRCFFGPLPDKLEEFQAIVHHMFPILMDTKYM 162
>gi|124809489|ref|XP_001348587.1| CAF1 family ribonuclease, putative [Plasmodium falciparum 3D7]
gi|23497484|gb|AAN37026.1| CAF1 family ribonuclease, putative [Plasmodium falciparum 3D7]
Length = 862
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 123 LLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKD-EQKIDAEMSIK 181
LL ++ K+F + + V + +++ VY S+K +++K+ EQ+I+ I
Sbjct: 444 LLAHTLITKYFDSIFCISVKVNDR--KHLAVY---RSEKDSYKEQIKNLEQEIEK---IN 495
Query: 182 ASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDT 241
IG R + D + KK+I+GHNCF DI HIY F+ LP + F + FPH DT
Sbjct: 496 QIIGVRLLFDEIIKNKKIIIGHNCFYDILHIYQTFYHDLPKSINVFKKKWTELFPHTFDT 555
Query: 242 KILLNSNSIL 251
K + +N L
Sbjct: 556 KYINETNEYL 565
>gi|343475142|emb|CCD13380.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 586
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 19/188 (10%)
Query: 131 KHFKD--LAYLRVSGENSCSQNVIVYIESESDKKMLMKE--VKDEQKIDAEMSIKASIGF 186
+H++D L + R G + + E ++L KE +D + +D +GF
Sbjct: 254 EHYEDIFLTFRRAGGVYHGTMRALFPTER---AQLLEKERASRDRELVD-------KLGF 303
Query: 187 RHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLN 246
R V L KK VGHNC DI + + F G P T F V FP + DTK +
Sbjct: 304 RLVFKALVESKKPCVGHNCLADILFLLASFDGEPPGTLPAFKHRVGHLFPMVFDTKYIAT 363
Query: 247 SNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGV 306
+ + ++ L F + S H++L + + +
Sbjct: 364 RQDLFPP-ARFTAHYLGGYFD----EYGFNSACIHVSLPLGFEAYDPLTIAGGGGGGNSP 418
Query: 307 KHEAGYDA 314
HEAGYDA
Sbjct: 419 THEAGYDA 426
>gi|116207778|ref|XP_001229698.1| hypothetical protein CHGG_03182 [Chaetomium globosum CBS 148.51]
gi|88183779|gb|EAQ91247.1| hypothetical protein CHGG_03182 [Chaetomium globosum CBS 148.51]
Length = 406
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 18/138 (13%)
Query: 193 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 252
L + + +++GHN FLD+ ++ F PLP A F + +++FP IIDTK L
Sbjct: 177 LRAHRPILIGHNPFLDLCFLHETFLQPLPADALAFRRATHRFFPRIIDTKHLAC------ 230
Query: 253 QRMKKSSTSLSKAFSVLCPQIALGSK---------STHLALQPSVKVEVEVDDIRSSNWN 303
Q K S +L++ ++ L + GS+ H PS + +
Sbjct: 231 QLGWKPSRNLAQLYADL---VGRGSRIHPKPQHHRHHHHQQPPSPPPFSIIPEPGFDPRE 287
Query: 304 SGVKHEAGYDAFMTGCVF 321
G+ H AG+D++MT VF
Sbjct: 288 RGMAHSAGFDSWMTAVVF 305
>gi|429329360|gb|AFZ81119.1| hypothetical protein BEWA_005270 [Babesia equi]
Length = 284
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 13/141 (9%)
Query: 185 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF-PHIIDTKI 243
G H+I+ L +KK +V HN LDI HIY KF G LP ++ E + + F I DTK
Sbjct: 152 GIHHIIEELIEQKKPLVFHNGMLDILHIYDKFIGKLPESSVEISKELVRLFRGGIFDTKF 211
Query: 244 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTH----LALQPSVKVEVEVDDIRS 299
R + +K + P + H L P + D +
Sbjct: 212 F--------ARYLHENFGYNKLRNTTLPTLHSALNGFHNMKELTDIPEERAHFNYIDKET 263
Query: 300 SNWNSGVKHEAGYDAFMTGCV 320
N N HEAG+DA + V
Sbjct: 264 GNINEKFFHEAGFDATIAAMV 284
>gi|224006131|ref|XP_002292026.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972545|gb|EED90877.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 848
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 96/230 (41%), Gaps = 39/230 (16%)
Query: 196 EKKLIVGHNCFLDIAHIYSKF-FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQR 254
E LI+ HN D+ + + LP + E+ + +YFP I DTK+L S
Sbjct: 525 EVPLII-HNGLQDLMFLLTHCDNAKLPESFEDTKKLIQQYFPTIYDTKVL--STEYSDAI 581
Query: 255 MKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNW-NSGVKHEAGYD 313
+K ST+L F C +P +++ I + N +G HEA YD
Sbjct: 582 IKGGSTALGDLFDATC------------RTEPD-EMKFTAPTIANQNGEGTGQAHEAAYD 628
Query: 314 AFMTGCVFAQACSHL------GIDFKQ--QSSSENLAHNEKLRE--HVNLLYLSWTNGEI 363
A+MTGCVFA S + G+ Q Q S+NL RE +N +Y+
Sbjct: 629 AYMTGCVFAALSSRILGSGRNGLTLDQLLQGPSDNLP-----RELLGLNKIYMH------ 677
Query: 364 INLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECIS 413
++L T + S S + E V G +++ DI +C+S
Sbjct: 678 LSLYTIDLESSSGPPGLHDPLSSGLSIETTFHVSGISTNISTRDIYQCLS 727
>gi|440801102|gb|ELR22127.1| poly(A)-specific ribonuclease, putative, partial [Acanthamoeba
castellanii str. Neff]
Length = 272
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 203 HNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSL 262
HN LD+ + Y F LP + F ++NK FP I DTK + ++ + R+
Sbjct: 1 HNLLLDLLYSYFHFEDRLPSSFRNFKVAINKVFPTIFDTKHIAATDPAYKDRL------- 53
Query: 263 SKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFA 322
++ G + A++ V V V + N HEAG+DA+MTG +FA
Sbjct: 54 ----------LSTGLGDVYAAVKGGVNV-VHAEGFDRYRENEEYAHEAGFDAYMTGAIFA 102
>gi|342184465|emb|CCC93947.1| putative ribonuclease [Trypanosoma congolense IL3000]
Length = 510
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 83/211 (39%), Gaps = 19/211 (9%)
Query: 126 QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIG 185
QL + K + Y+ + + S S V + + +KE + + G
Sbjct: 179 QLTLSKLRNERIYIAMEYDKSLSMGTSVLVTVRRMEPGALKEETTRLEDPTASETGMAEG 238
Query: 186 FRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILL 245
F+ L KK +VGHN +LDI + GPLP + + VN +FP I DTK L
Sbjct: 239 FQPFWKCLIKYKKPLVGHNFWLDIMFLVQMHAGPLPDDYDAYKKLVNYHFPVIYDTKTL- 297
Query: 246 NSNSILQQRMKKSSTSLSKAFSVLCPQIALG---SKSTHLALQPSVKV-EVEVDDIRSSN 301
L +R S L + IAL K P + EVD+
Sbjct: 298 --GRQLVKRSPLESFCLKDLYD---RAIALNKSLPKPLEFISPPEFNLYNTEVDEC---- 348
Query: 302 WNSGVKHEAGYDAFMTG---CVFAQACSHLG 329
S HEAG+D+++TG C+ C G
Sbjct: 349 --SCKVHEAGFDSYITGITFCIIRHCCGSGG 377
>gi|344239262|gb|EGV95365.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Cricetulus griseus]
Length = 74
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 192 LLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
+L +K +VGHN +D+ H+ KFF PLP + +EF +++ FP IIDTK
Sbjct: 1 MLVRAQKSLVGHNMMMDLLHLLEKFFKPLPESYDEFKQNIHSLFPVIIDTK 51
>gi|312375716|gb|EFR23028.1| hypothetical protein AND_13786 [Anopheles darlingi]
Length = 330
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 106/248 (42%), Gaps = 47/248 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQED------KALKHVNSTYEDESLDSWHSLKEIRD 54
+ FLA + FDFN EG+S+ + + + K + + + D E D
Sbjct: 117 LRFLADHGFDFNKLFREGLSFATEAEAERLRSDLKERQANRAAALQAAADGTADDAETTD 176
Query: 55 THLFNIPDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAI 112
++ +P AE + D + + L++ D+ V
Sbjct: 177 VNMVPVP----AEHQEQIDETAAKIEAFLKSDDKELIVN--------------------- 211
Query: 113 SLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIE----SESDKKMLMKEV 168
+ NGF + L+ Q++ K+ + ++ ++ EN+ + + +E +E D+ + K V
Sbjct: 212 NCNGF--QRKLIYQMIEHKYQQRISTSTITLENN---HKCIKVERKRTAEEDQAIEQKRV 266
Query: 169 KDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFI 228
E + ++ IG V+ LS +KL++GHN FLD+ + +FF PLP +EF
Sbjct: 267 AQENE-----DLQTMIGLSVVLQELSKARKLVIGHNIFLDLLYTIRQFFKPLPTDFKEFK 321
Query: 229 SSVNKYFP 236
+ FP
Sbjct: 322 KLTKEIFP 329
>gi|115476612|ref|NP_001061902.1| Os08g0440200 [Oryza sativa Japonica Group]
gi|113623871|dbj|BAF23816.1| Os08g0440200 [Oryza sativa Japonica Group]
Length = 291
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
+A FDFN CI++G+SYLSR QE A + + + ++++ + +I D
Sbjct: 128 MAHSGFDFNMCIYDGISYLSRAQESLARERIFIPH----------VRQLSSSPSTSIADS 177
Query: 64 LFAERMKDRLSEWLGGLLR--NRDEGSEVQPSFNDSKQQ-FETIFFKMRPAISLNGFTSH 120
+F R+K R+ W G + +GS V N +Q + + RP+ S++ +
Sbjct: 178 VFLTRIKSRIEHWRKGYTKPCKTADGSLV----NTLRQLILGSESYGSRPSFSIDVCSDR 233
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLM 165
Q+ L+ DL L V + ++ V +++ S DK +L+
Sbjct: 234 QVQLVLEAANHISDDLVPLVVPDKAGTARAVRVIFTSSPEDKNLLL 279
>gi|221059585|ref|XP_002260438.1| CAF1 family ribonuclease [Plasmodium knowlesi strain H]
gi|193810511|emb|CAQ41705.1| CAF1 family ribonuclease, putative [Plasmodium knowlesi strain H]
Length = 857
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
I ++G R + D + KK+I+GHNCF DI HIY F+ LP + F + + FP+
Sbjct: 492 INQTVGVRLLFDEIIKNKKIIIGHNCFYDILHIYQTFYHELPNSISVFKNKWTEIFPYTF 551
Query: 240 DTKILLNSNSIL 251
DTK L +N L
Sbjct: 552 DTKYLNETNEYL 563
>gi|237844919|ref|XP_002371757.1| CAF1 family ribonuclease domain containing protein [Toxoplasma
gondii ME49]
gi|211969421|gb|EEB04617.1| CAF1 family ribonuclease domain containing protein [Toxoplasma
gondii ME49]
Length = 551
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 19/148 (12%)
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP-HIIDTK 242
G + +I+ + ++K +V HN LD+ H++ KF G +P T EF S + + F I DTK
Sbjct: 312 TGLQRLIEAIVEKEKPLVVHNGHLDLLHVFDKFIGKVPGTLPEFCSEMLRLFTGGIYDTK 371
Query: 243 ILLNSNSILQQRMKKSSTS--------LSKAFSVLCPQIALGSKST-HLALQPSVKVEVE 293
+ N ++ T+ L ++ S+ +IA +S L Q ++
Sbjct: 372 HVANEGKTFVLKIGDPRTTSLVSLRHHLLRSESLCVFEIAPHRRSAFDLTFQ-----QLN 426
Query: 294 VDDIRSSNWNSGVKHEAGYDAFMTGCVF 321
D S G HEAGYDA +T +F
Sbjct: 427 CD----SGPECGRSHEAGYDALLTAQIF 450
>gi|221480959|gb|EEE19373.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 550
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 19/148 (12%)
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP-HIIDTK 242
G + +I+ + ++K +V HN LD+ H++ KF G +P T EF S + + F I DTK
Sbjct: 311 TGLQRLIEAIVEKEKPLVVHNGHLDLLHVFDKFIGKVPGTLPEFCSEMLRLFTGGIYDTK 370
Query: 243 ILLNSNSILQQRMKKSSTS--------LSKAFSVLCPQIALGSKST-HLALQPSVKVEVE 293
+ N ++ T+ L ++ S+ +IA +S L Q ++
Sbjct: 371 HVANEGKTFVLKIGDPRTTSLVSLRHHLLRSESLCVFEIAPHRRSAFDLTFQ-----QLN 425
Query: 294 VDDIRSSNWNSGVKHEAGYDAFMTGCVF 321
D S G HEAGYDA +T +F
Sbjct: 426 CD----SGPECGRSHEAGYDALLTAQIF 449
>gi|156100457|ref|XP_001615956.1| poly(A)-specific ribonuclease [Plasmodium vivax Sal-1]
gi|148804830|gb|EDL46229.1| poly(A)-specific ribonuclease , putative [Plasmodium vivax]
Length = 836
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
I ++G R + D + KK+I+GHNCF DI HIY F+ LP + F + + FP+
Sbjct: 489 INQTVGVRLLFDEIIKNKKIIIGHNCFYDILHIYQTFYHELPNSISLFKNKWTELFPYTF 548
Query: 240 DTKILLNSNSIL 251
DTK L +N L
Sbjct: 549 DTKYLNETNEYL 560
>gi|221501679|gb|EEE27443.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 551
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 19/148 (12%)
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP-HIIDTK 242
G + +I+ + ++K +V HN LD+ H++ KF G +P T EF S + + F I DTK
Sbjct: 312 TGLQRLIEAIVEKEKPLVVHNGHLDLLHVFDKFIGKVPGTLPEFCSEMLRLFTGGIYDTK 371
Query: 243 ILLNSNSILQQRMKKSSTS--------LSKAFSVLCPQIALGSKST-HLALQPSVKVEVE 293
+ N ++ T+ L ++ S+ +IA +S L Q ++
Sbjct: 372 HVANEGKTFVLKIGDPRTTSLVSLRHHLLRSESLCVFEIAPHRRSAFDLTFQ-----QLN 426
Query: 294 VDDIRSSNWNSGVKHEAGYDAFMTGCVF 321
D S G HEAGYDA +T +F
Sbjct: 427 CD----SGPECGRSHEAGYDALLTAQIF 450
>gi|134074883|emb|CAK38993.1| unnamed protein product [Aspergillus niger]
Length = 480
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 24/122 (19%)
Query: 187 RHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-- 244
R V L + ++VGHN F D+ + FFGPLP E+F + ++ FP ++DTK +
Sbjct: 314 RGVKQRLQKNRPVLVGHNLFTDLIYFCRCFFGPLPDRVEDFQAMAHEMFPVLMDTKYMAT 373
Query: 245 -----LNSNSILQQ----RMKKSSTSLSKAFSVL-------------CPQIALGSKSTHL 282
+N S LQ+ K+ + ++S++ ++L P G T L
Sbjct: 374 HNCGSINPRSSLQEINDSLAKQPTPAISRSIAILSFLTNVDQVYTLNLPNTTRGQSITKL 433
Query: 283 AL 284
AL
Sbjct: 434 AL 435
>gi|324507288|gb|ADY43094.1| Poly(A)-specific ribonuclease PARN [Ascaris suum]
Length = 616
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 109/269 (40%), Gaps = 60/269 (22%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPD 62
FL ++ FDFN I++GV+Y + ++ + + S E+ LD + E ++HL ++
Sbjct: 110 FLGEHDFDFNKAINKGVTYANLDE----ISTIRSDLEEGLLD-YDIFGERFNSHLISVQC 164
Query: 63 IL--FAERMKDRLSE---------WLGGLLRNRDEG--------SEVQP----SFNDSKQ 99
L ER++ S + N D+ SE QP F ++
Sbjct: 165 YLSDMLERLRKAASPPTISMYQEVTFSPFVLNLDDAIFDPYACRSEAQPLNHRKFCATRL 224
Query: 100 QFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESES 159
Q F SL+ T H L+V G ++++
Sbjct: 225 QAAARLF------SLHSNTHH----------------VKLKVDGHR-------LHVQQAK 255
Query: 160 DKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGP 219
+ + VK+E+ ++ G ++ + + +VGHNC D+ +IY FF
Sbjct: 256 PNE---RRVKNERAKLLNKTVNEIAGASQILYAIIDARLPVVGHNCLFDLLYIYQYFFAD 312
Query: 220 LPLTAEEFISSVNKYFPHIIDTKILLNSN 248
LP ++ ++N FP IIDT+IL N
Sbjct: 313 LPEDYAKWKKALNTIFPVIIDTRILAEEN 341
>gi|401412380|ref|XP_003885637.1| putative CAF1 family ribonuclease domain containing protein
[Neospora caninum Liverpool]
gi|325120057|emb|CBZ55609.1| putative CAF1 family ribonuclease domain containing protein
[Neospora caninum Liverpool]
Length = 559
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 22/168 (13%)
Query: 185 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP-HIIDTKI 243
G + +I+ + ++K +V HN LD+ H + KF G +P T EF S + + F I DTK
Sbjct: 321 GLQRLIEAIVEKEKPLVVHNGHLDLLHAFDKFIGKVPDTLAEFRSEMLRLFTGGIYDTKH 380
Query: 244 LLNSNSILQQRMKKSSTS--------LSKAFSVLCPQIALGSKST-HLALQPSVKVEVEV 294
+ N ++ T+ L ++ SV +IA +S L+ Q ++
Sbjct: 381 MANEGKTFVLKIGDPRTTSLVSLRHHLLRSESVCLFEIAPHRRSDFDLSFQ-----QLNC 435
Query: 295 DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLA 342
D S G HEAGYDA +T +F L + + S SE+LA
Sbjct: 436 D----SGPECGRSHEAGYDALLTAQIFVM---ELDLYAQHHSVSESLA 476
>gi|389585420|dbj|GAB68151.1| poly(A)-specific ribonuclease, partial [Plasmodium cynomolgi strain
B]
Length = 606
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
I ++G R + D + KK+I+GHNCF DI HIY F+ LP + F + + FP+
Sbjct: 489 INQTVGVRLLFDEIIKNKKIIIGHNCFYDILHIYQTFYHELPNSISVFKNKWTEIFPYTF 548
Query: 240 DTKILLNSNSIL 251
DTK L +N L
Sbjct: 549 DTKYLNETNEYL 560
>gi|389603471|ref|XP_001569280.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505865|emb|CAM44421.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 510
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 26/163 (15%)
Query: 169 KDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFI 228
K+++++ E +GFR +L +K IVGHN DI + PLP+ EF
Sbjct: 222 KEKRRLRCERDRARQLGFRQFWKILLKSRKPIVGHNFMQDIMFMIHMHETPLPVDYLEFK 281
Query: 229 SSVNKYFPHIIDTKI----LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLAL 284
+ + P I DTK L+ N+ ++ + +L + L + L
Sbjct: 282 KLLQRTLPTIYDTKTMAAKLMGDNAFQVTHLESLYQECRRRAGLLTDEFTLQYR-----L 336
Query: 285 QPSVKVEVEVDDIRSSNWNS-GVK-----HEAGYDAFMTGCVF 321
P N+N VK HEA YDA+MTG F
Sbjct: 337 PPGF-----------YNYNDYAVKQQSKAHEAAYDAYMTGIAF 368
>gi|407408061|gb|EKF31630.1| ribonuclease, putative [Trypanosoma cruzi marinkellei]
Length = 649
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 34/149 (22%)
Query: 197 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-----LNSNSIL 251
KK++V HN D+A +Y+ LP T EF S+ FP DT+ L L + +L
Sbjct: 396 KKILVIHNGLSDLAFLYAAMHQQLPKTLGEFKRSIRDMFPFFFDTRTLTCAPSLQNIGML 455
Query: 252 QQRMKKSSTSL---SKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKH 308
+KK+ +L +K + CP S +A Q +K +H
Sbjct: 456 TATLKKTYFTLLKRNKRIQIHCPS------SFEVAEQSEMK-----------------EH 492
Query: 309 EAGYDAFMTGCVFAQA---CSHLGIDFKQ 334
+A DAFMTG +F A + +G DF++
Sbjct: 493 DAVIDAFMTGSLFLFAQEELAQVGSDFRR 521
>gi|384490758|gb|EIE81980.1| hypothetical protein RO3G_06685 [Rhizopus delemar RA 99-880]
Length = 622
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 85/322 (26%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +FDFN I EG+ + + +E NST S+ + + I+++ L
Sbjct: 110 LAFLRSNKFDFNKLIDEGIPFYNFTEEGS----FNSTQSGTSMLNRRTY--IKESSL-TT 162
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
F + + ++ WL +G+ +P + F +
Sbjct: 163 NGKNFLDNARTAIATWL--------QGNTEKPLVVQTNSHF------------------Y 196
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
+ L+ Q V+ KH N V + K + + +K+E+K E +
Sbjct: 197 KKLITQEVLEKH-----------------NGYVQVAPRDSKHVQLVRLKEEEKRQREAKV 239
Query: 181 KA-SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ FR VI+ + K +V HN LDI H +F+ LP T EE V +
Sbjct: 240 SSPTLNFRAVIEAIKDAKCPVVAHNGALDIFHTVDQFWQYLPETIEE-CKDVGCF----- 293
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
+T +L + + + +K++ ++ A P + R
Sbjct: 294 NTTVLGSLYNTVFDELKEAGQEITMA--------------------PGFE--------RY 325
Query: 300 SNWNSGVKHEAGYDAFMTGCVF 321
+ + +HEAGYDA+MTG ++
Sbjct: 326 TGEGNNTEHEAGYDAYMTGVIY 347
>gi|229593727|ref|XP_001026894.2| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila]
gi|225567345|gb|EAS06649.2| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila SB210]
Length = 1272
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 111/257 (43%), Gaps = 57/257 (22%)
Query: 128 VVRKHFKDLAY----------LRVSGENSCS-----QNVIVYIESESDKKMLMKEVKDEQ 172
V+R+ ++ +Y ++ + E+ C +N + +I+ E +L KEV EQ
Sbjct: 88 VIRRKIENTSYKPEVVLESGAIKFNAEHGCDFDQWIKNSVTHIDREQYANLL-KEV--EQ 144
Query: 173 KID--------AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLP--- 221
K D A SI S+GF +L+ IVGHNC++D+ +++ F G LP
Sbjct: 145 KNDLSQAERNKAINSIHQSLGFTKFFELVGKRNVPIVGHNCYMDLLFLHNSFIGALPQYY 204
Query: 222 ---LTAE-----------------EFISSVNKYFPHIIDT-KILLNSNSILQQRMKKSST 260
L+ E E + N Y I + + L +S +I K+ T
Sbjct: 205 SKKLSVEEEEEQKHSQEANDEESKESSTQSNNYKERIFSSFQKLYDSKAISVSFFKEFMT 264
Query: 261 SLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNW----NSGVKHEAGYDAFM 316
+K+ S+ + + T+L+ ++++ + NW N HEAG+D+++
Sbjct: 265 DDNKSTSLESLKEFI---YTNLSKYRLAEIQLGQGAYQDYNWDDPNNQQKFHEAGFDSYL 321
Query: 317 TGCVFAQACSHLGIDFK 333
TG +F Q +FK
Sbjct: 322 TGWIFLQLRQFYVENFK 338
>gi|154276184|ref|XP_001538937.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414010|gb|EDN09375.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 421
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 122/278 (43%), Gaps = 45/278 (16%)
Query: 3 FLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI-P 61
FL K F A EG+ YLSR +E +A+ + +S HS+ +I D + ++ P
Sbjct: 108 FLMKNGFRMEAPFVEGLPYLSRLEEKQAMAKLA--------ESEHSITKIMDVNPKDMDP 159
Query: 62 DI-LFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS- 119
+ F +++ + W+ D + +P ++ E+ R SLN +
Sbjct: 160 ESQAFLTQVRRLIDAWINETGDKEDYLNIPEPCPLENGNT-ESPLGSWR--FSLNSYQKR 216
Query: 120 --HQLLLIQL-----VVRKHF-KDLAY-------LRVSGENSCSQNVIV------YIE-- 156
HQL+ ++ + R+ F + + Y +RV + + VI +E
Sbjct: 217 LVHQLVRVEYPSLVSIGRQTFVQIIPYDKQREESIRVDKSRALRERVIQKTGFRWVVEGM 276
Query: 157 -----SESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDL-LSSEKKLIVGHNCFLDIA 210
S D ++ + + + ++ S A + + + L L S + ++VGHN F D+
Sbjct: 277 VGGGLSAMDPRVFLSCISNPAPVNT--STSALLSYSDDLQLKLKSRQPVLVGHNLFTDLI 334
Query: 211 HIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSN 248
+ Y F G LP E+F ++++ FP +IDTK + N
Sbjct: 335 NFYKCFIGDLPDRIEDFKNAIHALFPLVIDTKYMATHN 372
>gi|336268418|ref|XP_003348974.1| hypothetical protein SMAC_01995 [Sordaria macrospora k-hell]
gi|380094234|emb|CCC08451.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 552
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 37/57 (64%)
Query: 195 SEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSIL 251
+++ +++ H+ + H YS F GPLP T +EF +++ +P I+DT++L + ++ L
Sbjct: 309 AKRPILLVHSQLDMLCHFYSTFLGPLPKTLDEFTKRIHQIYPRIVDTRVLYSPDTFL 365
>gi|281200346|gb|EFA74567.1| hypothetical protein PPL_00067 [Polysphondylium pallidum PN500]
Length = 525
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 187 RHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 244
R +IDLLS ++ +V HN F D+ ++ F LP FI+ + K FP I DTK L
Sbjct: 232 RRIIDLLSKHQQPLVIHNGFYDLLFLFQSFIDDLPDQLNVFIAKLTKVFPKIYDTKFL 289
>gi|219125272|ref|XP_002182908.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405702|gb|EEC45644.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 663
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 23/164 (14%)
Query: 200 IVGHNCFLDIAHIYSKFF-GPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKS 258
+V HN F+DI + + F LP T +E +++YFP I DTK + S
Sbjct: 344 LVVHNGFMDICFLLTHFHHETLPDTLKECKGLISRYFPIIYDTKAVTTECST----WSNE 399
Query: 259 STSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTG 318
+++L+ F + Q + L+ ++V V D + +HEA YDA+MTG
Sbjct: 400 NSALAALFEKVVRQ--------NNGLEDRIEV---VADAGRGDATDDQEHEAAYDAYMTG 448
Query: 319 CVFAQACSHLGIDFKQQSSS----ENLAH---NEKLREHVNLLY 355
++ C + + ++ + N+ H + + E+ LLY
Sbjct: 449 AIYIGLCEQIKSTLQDETVALDGVGNMTHLTIDNEGTENTRLLY 492
>gi|340056520|emb|CCC50853.1| putative ribonuclease [Trypanosoma vivax Y486]
Length = 640
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 19/151 (12%)
Query: 175 DAEMSIKASIGFRHVIDLLSS--EKKL-IVGHNCFLDIAHIYSKFFGPLPLTAEEFISSV 231
D+ +S + G R ++ +++ E+K+ +V HN F D+A +Y P + EF +
Sbjct: 369 DSTVSDERYFGTRLLLAFITTMRERKIPLVLHNGFSDLAFLYCMLHRDTPQSLAEFKGRI 428
Query: 232 NKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVE 291
+ FP I DT+ L S+ Q ++ + L K + I L S++ + + S
Sbjct: 429 REMFPVIYDTRALTCVPSL--QNIQNMTGPLKKTY------INLRSRNVFVNINYSGSTP 480
Query: 292 VEVDDIRSSNWNSGVKHEAGYDAFMTGCVFA 322
D R +H+A +D+FMTG +FA
Sbjct: 481 CPGDTAR--------EHDACFDSFMTGSLFA 503
>gi|407860775|gb|EKG07489.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 633
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 34/149 (22%)
Query: 197 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-----LNSNSIL 251
KK++V HN D+A + + P P T EF ++ + FP DT+ L L + IL
Sbjct: 380 KKILVIHNGLSDLAFLCAAMHQPPPETLGEFKRTIREMFPFFFDTRTLTCAPSLQNIGIL 439
Query: 252 QQRMKKSSTSL---SKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKH 308
+KK+ +L +K + CP S +A Q +K +H
Sbjct: 440 TATLKKTYFTLLKRNKRIQLHCPS------SFEVAEQSEMK-----------------EH 476
Query: 309 EAGYDAFMTGCVFAQA---CSHLGIDFKQ 334
+A DAFMTG +F A + +G DF++
Sbjct: 477 DAVIDAFMTGSLFLFAQEELAQVGSDFRR 505
>gi|70951349|ref|XP_744922.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56525070|emb|CAH77554.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 759
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 123 LLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKA 182
LL ++ K+F + + V + +N+ +Y +++K +++K Q ++ E I
Sbjct: 363 LLAHTLITKYFNSIFCISVKLNDK--KNLAIY---KTEKDSYNEQIKALQ-MEIE-KINE 415
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
+IG R + D + K+++GHN F DI HIY F+ LP + F + P+ IDTK
Sbjct: 416 TIGVRLLFDEIIKSNKILIGHNWFYDILHIYQTFYHELPDSIHAFKRKWTE-LPYTIDTK 474
Query: 243 IL 244
+
Sbjct: 475 YM 476
>gi|402077830|gb|EJT73179.1| hypothetical protein GGTG_10028 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 444
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 97/255 (38%), Gaps = 71/255 (27%)
Query: 117 FTSHQLLLIQLVVRKHFKDLAYLRVSGENSCS-QNVIVYIESESDKKMLMKEVKDEQKID 175
TS Q LI ++ FK+ LR + C + + + +K L ++++D +
Sbjct: 215 LTSLQTRLIYQLLETDFKEYG-LRGKRKGDCLFMQITIKGADKYQEKTLSRQMRDRK--- 270
Query: 176 AEMSIKASIGFRHVIDLLSS---------------------------------EKK---- 198
++++ GFR+V + L+ EKK
Sbjct: 271 --LAVRHQTGFRYVFEALAGGDFAEEIDVQLLLEPGAHSQDKMDEMRRKLRSIEKKTKTR 328
Query: 199 --LIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMK 256
+++ HN LD+ +Y F G LP T +F + FP ++DTK ++
Sbjct: 329 ARVLILHNSLLDLCFLYQSFVGDLPRTLTQFKLDLQA-FPRLVDTKFMVTLGR------- 380
Query: 257 KSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFM 316
P I+LG L VK +E+ I + V HEAGYD+++
Sbjct: 381 ----------HEFDPDISLGQ------LYKMVK-NLELPLIAPPMPSIRVAHEAGYDSWL 423
Query: 317 TGCVFAQACSHLGID 331
T F + LG D
Sbjct: 424 TAVAFLKFSWKLGQD 438
>gi|405964428|gb|EKC29916.1| Poly(A)-specific ribonuclease PARN [Crassostrea gigas]
Length = 481
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 53/218 (24%)
Query: 115 NGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVKDEQK 173
NGF LI VR+ F+ +L + + + + I++E + KM K+++K
Sbjct: 157 NGFVRK---LIYQTVRQRFQSGVHLGAKTDEKKQRYIQVTRIKTEDEMKM-----KEQEK 208
Query: 174 IDAEMS-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVN 232
AE++ ++ ++GF VI L+S +EF +
Sbjct: 209 QSAELAELEEAVGFTKVIRLISQS--------------------------NYQEFKAMAK 242
Query: 233 KYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEV 292
FP I+DTK++ N+ L P LG H+ +P E+
Sbjct: 243 CVFPKILDTKLMANTAPCKD----------------LLPSSVLGDLLNHINCKPFKPPEI 286
Query: 293 EV-DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 329
+ ++ + HEA YDA++TG F + LG
Sbjct: 287 VIPENFPQYKLDDSNLHEAAYDAYITGICFTAMSNFLG 324
>gi|71649058|ref|XP_813287.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70878157|gb|EAN91436.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 670
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 34/149 (22%)
Query: 197 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-----LNSNSIL 251
KK++V HN D+A + + P P T EF ++ + FP DT+ L L + IL
Sbjct: 417 KKILVIHNGLSDLAFLCAAMHQPPPETLCEFKRTIREMFPFFFDTRTLTCAPSLQNIGIL 476
Query: 252 QQRMKKSSTSL---SKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKH 308
+KK+ +L +K + CP S +A Q +K +H
Sbjct: 477 TATLKKTYFTLLKRNKRIQLHCPS------SFEVAEQSEMK-----------------EH 513
Query: 309 EAGYDAFMTGCVFAQA---CSHLGIDFKQ 334
+A DAFMTG +F A + +G DF++
Sbjct: 514 DAVIDAFMTGSLFLFAQEELAQVGSDFRR 542
>gi|403224141|dbj|BAM42271.1| uncharacterized protein TOT_040000640 [Theileria orientalis strain
Shintoku]
Length = 253
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 185 GFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF-PHIIDTKI 243
G H+I + + +V HN LDI H+Y KF GPLP E + ++F I DTK
Sbjct: 135 GLHHLIKSIIEYRIPLVFHNGMLDILHLYDKFIGPLPENPVEISREITRFFVGGIFDTKE 194
Query: 244 LLNSNSI 250
L SN I
Sbjct: 195 HLTSNVI 201
>gi|260821597|ref|XP_002606119.1| hypothetical protein BRAFLDRAFT_125118 [Branchiostoma floridae]
gi|229291457|gb|EEN62129.1| hypothetical protein BRAFLDRAFT_125118 [Branchiostoma floridae]
Length = 490
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 22/176 (12%)
Query: 265 AFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQA 324
F L LG L +P KV V V + + +H+AGYDA++TG F
Sbjct: 209 PFKELVSNTTLGDLEATLGKEP-FKVPVIVFPEDFPGYETAQEHQAGYDAYITGRCFTIM 267
Query: 325 CSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNH 384
++LG FK QS L + L VN LYL + ++ N T + L N ++H
Sbjct: 268 ANYLG-KFKSQSKPA-LPGSALLEPFVNKLYLM----RVQDIPYVNLTGQDLKPN--RDH 319
Query: 385 YPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAE 440
V FP K+ D+ + + +GP I + +D+ + FV ++ +
Sbjct: 320 ---------VFHVTFPKEWKSNDLYQLF-RPFGP---IYIAWIDDVSAFVALNKKD 362
>gi|440469932|gb|ELQ39023.1| hypothetical protein OOU_Y34scaffold00516g58 [Magnaporthe oryzae
Y34]
gi|440483021|gb|ELQ63464.1| hypothetical protein OOW_P131scaffold00982g62 [Magnaporthe oryzae
P131]
Length = 582
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 198 KLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNS 249
++IVGHN D+ IY+ F G LP + ++F + FP +DTK + ++
Sbjct: 341 RVIVGHNSLFDLCFIYNSFIGTLPTSLQQFKIDIRAMFPRYVDTKYMATQDA 392
>gi|389630114|ref|XP_003712710.1| hypothetical protein MGG_05172 [Magnaporthe oryzae 70-15]
gi|351645042|gb|EHA52903.1| hypothetical protein MGG_05172 [Magnaporthe oryzae 70-15]
Length = 426
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 198 KLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNS 249
++IVGHN D+ IY+ F G LP + ++F + FP +DTK + ++
Sbjct: 326 RVIVGHNSLFDLCFIYNSFIGTLPTSLQQFKIDIRAMFPRYVDTKYMATQDA 377
>gi|71404979|ref|XP_805146.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70868440|gb|EAN83295.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 633
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 34/149 (22%)
Query: 197 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL-----LNSNSIL 251
KK++V HN D+A + + P P T EF ++ + FP DT+ L L + IL
Sbjct: 380 KKILVIHNGLSDLAFLCAAMHQPPPETLGEFKRTIREMFPFFFDTRTLTCAPSLQNIGIL 439
Query: 252 QQRMKKSSTSL---SKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKH 308
+KK+ +L +K + CP S +A Q +K +H
Sbjct: 440 TATLKKTYFTLLKRNKRIQLHCPS------SFEVAEQSEMK-----------------EH 476
Query: 309 EAGYDAFMTGCVFAQA---CSHLGIDFKQ 334
+A DAFMTG +F A + +G +F++
Sbjct: 477 DAVIDAFMTGSLFLFAQEELAQVGSNFRR 505
>gi|209875359|ref|XP_002139122.1| CCR4-NOT transcription complex subunit 8 protein [Cryptosporidium
muris RN66]
gi|209554728|gb|EEA04773.1| CCR4-NOT transcription complex subunit 8 protein, putative
[Cryptosporidium muris RN66]
Length = 272
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 56/135 (41%), Gaps = 37/135 (27%)
Query: 192 LLSSEKKLIVGHNCFLDIAHIYSKF-FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSI 250
+L+S+ K I H C+ D A++ PLP T EFIS VN FP + D K +L
Sbjct: 144 ILNSKIKWISFHGCY-DFAYLIKILTCSPLPETESEFISLVNMLFPSLYDIKFVLK---- 198
Query: 251 LQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEA 310
Q + TSL K S HL +Q G+ H+A
Sbjct: 199 -QLTNLNNLTSLQKL-------------SEHLQIQ-----------------RIGIAHQA 227
Query: 311 GYDAFMTGCVFAQAC 325
G DA +T C F + C
Sbjct: 228 GSDALITCCTFFKLC 242
>gi|346472889|gb|AEO36289.1| hypothetical protein [Amblyomma maculatum]
Length = 450
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 186 FRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP-HIIDTKIL 244
R + LL +K IV HN F+D +Y F+ LP T + F++ +N+ FP + DTK +
Sbjct: 151 LRKLFSLLVVHRKPIVFHNGFMDTVFLYHSFYLALPPTLQTFLADLNELFPSRVYDTKFI 210
Query: 245 LNSNSIL 251
+ + L
Sbjct: 211 AETKASL 217
>gi|346971623|gb|EGY15075.1| hypothetical protein VDAG_06565 [Verticillium dahliae VdLs.17]
Length = 364
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 193 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 244
L +++ ++VGHN D+ +Y F G LP T F + FP IIDTK+L
Sbjct: 236 LRAKRPVLVGHNMVYDLTFLYDAFVGCLPATLAGFQFRLLAIFPRIIDTKVL 287
>gi|302406542|ref|XP_003001107.1| predicted protein [Verticillium albo-atrum VaMs.102]
gi|261360365|gb|EEY22793.1| predicted protein [Verticillium albo-atrum VaMs.102]
Length = 447
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 193 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 244
L +++ ++VGHN D+ +Y F G LP T F + FP IIDTK+L
Sbjct: 313 LRAKRPVLVGHNMVYDLTFLYDAFVGCLPATLAGFQFRLLAIFPRIIDTKVL 364
>gi|320586948|gb|EFW99611.1| caf1 family ribonuclease [Grosmannia clavigera kw1407]
Length = 361
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 193 LSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILL 245
L + ++VGHN +D+ +Y FF LP +F +++ FP I+DTK L+
Sbjct: 235 LKQRQPVLVGHNMLVDLCFLYRTFFETLPENLSDFSHKIHELFPRIVDTKNLV 287
>gi|300120079|emb|CBK19633.2| unnamed protein product [Blastocystis hominis]
Length = 567
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 67/335 (20%), Positives = 137/335 (40%), Gaps = 64/335 (19%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNST-----YEDESLDSWHSLKEIRDT 55
+DFL F F EG+ L + E+K L+H+ + Y+D+ KE R++
Sbjct: 120 LDFLRNNHFKFGRLFSEGIPTLRKSDEEKILEHLRMSQDRYDYKDD--------KE-RES 170
Query: 56 HLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 115
E + ++++ W+ + NRD +++ P+ + S ++ L
Sbjct: 171 ----------MEPIFEQINSWIQAM--NRD--AQLSPNTDHSLAT---------ESLLLP 207
Query: 116 GFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 175
SH+ L+ V + L+ + +N + + ++ + + E+
Sbjct: 208 PLNSHKRKLLYQEVSNRYPTLSLKELPEDNPSTGKI-------KRTRIFVTKQPSERIEP 260
Query: 176 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
A + G R V++ + KK +VG D+ ++ + LP T EF+ + K
Sbjct: 261 AVPEVCQHAGVRRVVEAILESKKPLVGFQTMGDVMYMLGGIYKELPRTLPEFLEMM-KEV 319
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVD 295
++D K ++ + ++ ++ +L+ A+ Q A K+ +P V+ VE
Sbjct: 320 ELLVDLKEVVEMEGLKEEDIR--HCNLTHAY-----QQAEAWKNG----EPEVRRAVENS 368
Query: 296 DIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGI 330
+ + H+A DA +TGC+F + G
Sbjct: 369 EFTA--------HDAACDALITGCLFVKLLYRCGF 395
>gi|452824550|gb|EME31552.1| hypothetical protein Gasu_12240 [Galdieria sulphuraria]
Length = 433
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 200 IVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKIL 244
I+ HN LD+A +YS F LP T+EEF+ ++++ P I DTK+L
Sbjct: 233 IILHNGLLDLAFLYSSFEENLPKTSEEFVRNLHQLLPCIYDTKLL 277
>gi|336470115|gb|EGO58277.1| hypothetical protein NEUTE1DRAFT_82678 [Neurospora tetrasperma FGSC
2508]
gi|350290191|gb|EGZ71405.1| hypothetical protein NEUTE2DRAFT_109890 [Neurospora tetrasperma
FGSC 2509]
Length = 499
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 98/267 (36%), Gaps = 72/267 (26%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
LA + FN GV YL+R + T E+ L W + K + D + +
Sbjct: 119 LATNGWGFNEAWERGVPYLTRWEAQ--------TVEERFLQPWETKKPL-DINKLDAESQ 169
Query: 64 LFAERMKDRLSEWLGG-LLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQL 122
F ++++ WL L NR Q F L
Sbjct: 170 KFRAWANEQITSWLKEERLTNRRIALTRQSGF---------------------------L 202
Query: 123 LLIQLVVRKHFKD-------LAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKID 175
+++ ++ HF + LAYL V +S SQ V + + ++ ++ ++
Sbjct: 203 YVVEALLGGHFANDIEPELCLAYLLVVDRDSRSQLVSAFRDR-------LRAAENRNRL- 254
Query: 176 AEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYF 235
R I L+ S+ ++ H YS F GPLP T + F ++ F
Sbjct: 255 -----------RRPILLIHSQLDML---------CHFYSTFLGPLPETLDGFTKEIHDIF 294
Query: 236 PHIIDTKILLNSNSILQQRMKKSSTSL 262
P I+D++IL N+ + TS+
Sbjct: 295 PRIVDSRILYPLNNYPSHSFDRHKTSI 321
>gi|413922374|gb|AFW62306.1| hypothetical protein ZEAMMB73_533831 [Zea mays]
gi|413922375|gb|AFW62307.1| hypothetical protein ZEAMMB73_533831 [Zea mays]
Length = 244
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Query: 9 FDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAER 68
FDFN CI++G+SYLSR QE A + + + + L S ++ ++ D +F R
Sbjct: 131 FDFNMCIYDGISYLSRVQESLAREKIFTPRPHQLLSSPNT----------SVADSVFMNR 180
Query: 69 MKDRLSEW 76
+K R+ W
Sbjct: 181 IKSRIVNW 188
>gi|157877855|ref|XP_001687225.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68130300|emb|CAJ09612.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 510
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 63/169 (37%), Gaps = 36/169 (21%)
Query: 169 KDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFI 228
K+++++ E +GFR +L +K IVGHN DI + P+ EF
Sbjct: 222 KEKKRLQCERDRAEQLGFRQFWKILLQSRKPIVGHNFMQDIMFMVHMHEAPISHDYVEFK 281
Query: 229 SSVNKYFPHIIDTKILLNS------------NSILQQ---RMKKSSTSLSKAFSVLCPQI 273
+ + P I DTK + + Q+ R SS ++ + + P
Sbjct: 282 KVLQRTLPTIYDTKTMATKLTGGDAFPVTHLEPLYQECRCRAGLSSDQFTQEYRL--PPG 339
Query: 274 ALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFA 322
G + + LQ HEA YDA+MTG F+
Sbjct: 340 FYGYNDSAVKLQSKA-------------------HEAAYDAYMTGIAFS 369
>gi|401421012|ref|XP_003874995.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491231|emb|CBZ26497.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 510
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 20/161 (12%)
Query: 169 KDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFI 228
K+++++ E +GFR +L +K IVGHN D+ + PL EF
Sbjct: 222 KEKRRLQCERDRAQHLGFRQFWKILVQSRKPIVGHNFMQDVMFMVHMHETPLSQDYLEFK 281
Query: 229 SSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV--LCPQIALGSKSTHLALQP 286
+ + P I DTK + + + AF V L P + L+
Sbjct: 282 KVLQRTLPSIYDTKTM------------AAKLTGDDAFPVTHLEPLYQECRRRASLSSDQ 329
Query: 287 SVKVEVEVDDIRSSNWNSGVK-----HEAGYDAFMTGCVFA 322
+ E + +S VK HEA YDA+MTG F+
Sbjct: 330 FTQ-EYRLPPGFYGYNDSAVKQQSKAHEAAYDAYMTGIAFS 369
>gi|389594811|ref|XP_003722628.1| putative ribonuclease [Leishmania major strain Friedlin]
gi|323363856|emb|CBZ12862.1| putative ribonuclease [Leishmania major strain Friedlin]
Length = 677
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 196 EKKLIVGHNCFLDIAHIYSKFFGP--LPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQ 253
++K IV +N + D+ + +GP +P F S V ++FP + DT++L + + Q
Sbjct: 442 QRKPIVFYNGYTDVMFLLLALYGPQNMPPNLSSFKSLVRRHFPSLFDTRVLSCAGPL--Q 499
Query: 254 RMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSG---VKHEA 310
+ + LS + A+G V D + S ++ V H A
Sbjct: 500 GLGNFTGKLSSVVDEMSKVSAIGP-----------HVSFSFDPLVSGGRDATQHLVAHNA 548
Query: 311 GYDAFMTGCVFAQA 324
+DA +TG +FA A
Sbjct: 549 AFDALLTGKLFAFA 562
>gi|401429498|ref|XP_003879231.1| putative ribonuclease [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322495481|emb|CBZ30786.1| putative ribonuclease [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 677
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 18/134 (13%)
Query: 196 EKKLIVGHNCFLDIAHIYSKFFGP--LPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQ 253
++K IV +N + D+ + +GP +P F S V ++FP + DT+IL S + Q
Sbjct: 442 QRKPIVFYNGYTDVMFLLLALYGPQNMPPDLSSFKSLVRRHFPSLFDTRILSCSGPL--Q 499
Query: 254 RMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSG---VKHEA 310
+ + LS SV+ + S H V D + S ++ V H A
Sbjct: 500 GLGNFTGKLS---SVVDEMSKVNSIGPH--------VSFNFDPLVSGGRDATQHLVAHNA 548
Query: 311 GYDAFMTGCVFAQA 324
+DA +TG +FA A
Sbjct: 549 AFDALLTGKLFAFA 562
>gi|85090827|ref|XP_958604.1| hypothetical protein NCU07559 [Neurospora crassa OR74A]
gi|28919979|gb|EAA29368.1| predicted protein [Neurospora crassa OR74A]
Length = 499
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 197 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNS 249
+ +++ H+ + H YS F GPLP T + F ++ FP I+D +IL N+
Sbjct: 256 RPILLIHSQLDMLCHFYSTFLGPLPETFDGFTKEIHNIFPRIVDNRILYPLNN 308
>gi|342183685|emb|CCC93165.1| putative ribonuclease [Trypanosoma congolense IL3000]
Length = 623
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 197 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMK 256
+K ++ HN D+A + S LP T EF + ++ FP DT+ L S + Q +
Sbjct: 382 RKPVIVHNGLSDMAFLCSLLRKDLPDTLPEFKAFMHSAFPVFYDTRTLTCSPKL--QNIP 439
Query: 257 KSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFM 316
+ L K +++ L ++T + + ++ DI+ H + DAFM
Sbjct: 440 NLTGPLKKTYTI------LRERNTDVVMFDKRFRAIQNWDIKD--------HHSACDAFM 485
Query: 317 TGCVFA---QACSHLGIDFK 333
TG +FA Q + +G D++
Sbjct: 486 TGSLFAYVQQEFARVGADYR 505
>gi|427796785|gb|JAA63844.1| Putative caf1 family ribonuclease, partial [Rhipicephalus
pulchellus]
Length = 435
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 186 FRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP-HIIDTKIL 244
R + +L KK IV HN F+D +Y + LP + F++ +N FP I DTK +
Sbjct: 146 LRKLFSMLIVHKKPIVVHNGFMDAVFLYHSLYSALPPSLPTFLADLNDLFPGRIYDTKYI 205
Query: 245 LNSNSIL 251
+ + L
Sbjct: 206 AEAKASL 212
>gi|406859963|gb|EKD13024.1| CAF1 family ribonuclease [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 484
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 31/168 (18%)
Query: 219 PLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSK 278
PLP EF ++ KYFP I D K L+ + +I Q M +++ ++ VL K
Sbjct: 297 PLPDDEFEFDVNMKKYFPSIYDIKYLMKA-AIRQHTMGQATPLDPQSAEVLQ---KFEQK 352
Query: 279 STHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL---------- 328
S AL S+K++ + G H+AG D+ +TG VF + +
Sbjct: 353 SGLEALAESLKIKRQ-----------GFAHQAGSDSLLTGKVFFRIREKIFNGEISDEHD 401
Query: 329 ----GIDFKQQS-SSENLAHNE-KLREHVNLLYLSWTNGEIINLSTGN 370
G+ F + S+ ++ HN + +E+V +TNG +TGN
Sbjct: 402 GKVWGLGFPEYVISNAHIQHNNYQQQENVTPGQNGYTNGTPSTPNTGN 449
>gi|71745898|ref|XP_827574.1| ribonuclease [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|70831739|gb|EAN77244.1| ribonuclease, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 623
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 197 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMK 256
+K +V HN D+A + P EF V + FP DT+ L + S+ Q +
Sbjct: 378 RKPLVIHNGLSDLAFLCCLMHKEPPQNIVEFKRLVREVFPVFYDTRTLTCAPSL--QSII 435
Query: 257 KSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK-HEAGYDAF 315
+ L K + +L Q + V++ D + + + G K H+A +DAF
Sbjct: 436 GLTGPLMKTYLILSEQ--------------NKTVDIYHDAANNFSTDGGPKEHDAAWDAF 481
Query: 316 MTGCVFA---QACSHLGIDFKQ 334
MTG +FA Q + + D+++
Sbjct: 482 MTGSLFAFAQQELAQVNADYRR 503
>gi|167525212|ref|XP_001746941.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774721|gb|EDQ88348.1| predicted protein [Monosiga brevicollis MX1]
Length = 977
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 187 RHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
R V + L IV HN LD+ +Y + LP T + F++ ++ F +IDTK
Sbjct: 717 RRVFEALIQSTAPIVTHNGLLDLCFLYQHLWADLPATLDVFVADCSQLFGRVIDTK 772
>gi|443696035|gb|ELT96816.1| hypothetical protein CAPTEDRAFT_205148 [Capitella teleta]
Length = 316
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 250 ILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHE 309
IL+ K+ + A P + +G A + SVK+E V H
Sbjct: 199 ILEGEHKQKKKRKTIAMETSDPPLPVGG-----ANEGSVKLEARVRG-----------HR 242
Query: 310 AGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIINLSTG 369
AG+DAFMTG +FA C+ G + + E+ + +E+ N L+LS + + L +G
Sbjct: 243 AGFDAFMTGFIFAFFCARYG----ESNGKESFIDSVGFQEYRNKLFLSGKDIPLQVLKSG 298
>gi|261331778|emb|CBH14772.1| ribonuclease, putative [Trypanosoma brucei gambiense DAL972]
Length = 623
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 197 KKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMK 256
+K +V HN D+A + P EF V + FP DT+ L + S+ Q +
Sbjct: 378 RKPLVIHNGLSDLAFLCCLMHKEPPQNIVEFKRLVREVFPVFYDTRTLTCAPSL--QSII 435
Query: 257 KSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVK-HEAGYDAF 315
+ L K + +L + + V++ D + + + G K H+A +DAF
Sbjct: 436 GLTGPLMKTYLILSEE--------------NKTVDIYHDAANNFSTDGGPKEHDAAWDAF 481
Query: 316 MTGCVFA---QACSHLGIDFKQ 334
MTG +FA Q + + D+++
Sbjct: 482 MTGSLFAFAQQELAQVNADYRR 503
>gi|241565990|ref|XP_002402057.1| conserved hypothetical protein [Ixodes scapularis]
gi|215499948|gb|EEC09442.1| conserved hypothetical protein [Ixodes scapularis]
Length = 514
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 19/164 (11%)
Query: 184 IGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKI 243
+GF + L K +VGHN LD+ + +F PLP + F + + FP + DTK
Sbjct: 230 LGFSRCFETLVRSGKPLVGHNMLLDLLLLLHQFREPLPRSYARFKTVLGSLFPVVYDTKH 289
Query: 244 LLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN 303
+ S S+ QQ L+ A L S ++ + + K++ +R+
Sbjct: 290 I--SLSVRQQASPWLRELLTAA-----DLFTLHSALANVPVPFAPKIQGAPAVLRA---- 338
Query: 304 SGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKL 347
H+AG DA++ G VF + L QQ++S A L
Sbjct: 339 ----HDAGSDAYVAGAVFIK----LAHVLAQQAASALPAPQRAL 374
>gi|405977745|gb|EKC42179.1| Target of EGR1 protein 1 [Crassostrea gigas]
Length = 319
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 182 ASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP-HIID 240
+S+ R +L +K +V HN D+ ++Y F+ LP T FI+ + + F + D
Sbjct: 168 SSMCLRSFFTVLVKSRKPVVFHNALTDLVYLYQNFYASLPPTMSSFIADLTEIFEGGVYD 227
Query: 241 TKILLN 246
TK + +
Sbjct: 228 TKYITD 233
>gi|294947177|ref|XP_002785271.1| hypothetical protein Pmar_PMAR016656 [Perkinsus marinus ATCC 50983]
gi|239899017|gb|EER17067.1| hypothetical protein Pmar_PMAR016656 [Perkinsus marinus ATCC 50983]
Length = 132
Score = 39.7 bits (91), Expect = 4.8, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 118 TSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE 177
++ Q LL+ V+ + +L + + ++VY + + +KE++++ +
Sbjct: 41 SAFQRLLMHSVIAAEYPNLYSYSSRRASDGERMLVVYRSQDQLYETQIKEIEEDLQ---- 96
Query: 178 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAH 211
+G R ++D ++ K+IVGHNCFLD+ H
Sbjct: 97 -QTTVQVGVRSLLD--AAADKVIVGHNCFLDVLH 127
>gi|253744084|gb|EET00339.1| Hypothetical protein GL50581_2419 [Giardia intestinalis ATCC 50581]
Length = 661
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 37/155 (23%)
Query: 204 NCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSI---LQQRMKKSST 260
+ +L +A IY + + T +F++ ++ FP D KI ++ I L+ + +
Sbjct: 393 DIYLTLASIYGEHYLS---TYAQFLTLISNTFPRCFDLKIFVDLPPIINHLKTNLSLGAR 449
Query: 261 SLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCV 320
SLS+ FS+ T LQ + + DD + + H+AGYD+ MT
Sbjct: 450 SLSQLFSI-----------TSYGLQ---SAQSDADD-------TNLVHDAGYDSLMTALS 488
Query: 321 FAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLY 355
F H + L EH NLLY
Sbjct: 489 FEWILGHF----------LAITGTVTLDEHKNLLY 513
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,584,829,311
Number of Sequences: 23463169
Number of extensions: 346096511
Number of successful extensions: 897933
Number of sequences better than 100.0: 419
Number of HSP's better than 100.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 896767
Number of HSP's gapped (non-prelim): 758
length of query: 573
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 425
effective length of database: 8,886,646,355
effective search space: 3776824700875
effective search space used: 3776824700875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)