BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008236
(573 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LG26|PARN_ARATH Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN
PE=1 SV=2
Length = 689
Score = 586 bits (1510), Expect = e-166, Method: Compositional matrix adjust.
Identities = 291/509 (57%), Positives = 382/509 (75%), Gaps = 10/509 (1%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
MDFLAKYQFDFN CIHEG+SYLSR +E++A K + + ++ +DS +E++ L +
Sbjct: 150 MDFLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELK---LVRL 206
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
D+LFA RM+ L+EW GLL + SE N S Q ET+F MRPA+SL GFTSH
Sbjct: 207 ADVLFAARMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSH 266
Query: 121 QLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMSI 180
QL ++ V+RKHF DL Y+ + ++S S++++VY +S+SDK+ LMKE KDE+K AE I
Sbjct: 267 QLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVYTDSDSDKENLMKEAKDERKRLAERKI 326
Query: 181 KASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240
+++IGFR VIDLL+SEKKLIVGHNCFLDIAH+YSKF GPLP TAE+F++S+N +FP+I+D
Sbjct: 327 QSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVD 386
Query: 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSS 300
TKILLN N +L QRMKKSSTSLS AFS LCPQI S+S+ LQ V ++VE+D++R S
Sbjct: 387 TKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCS 446
Query: 301 NWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTN 360
NWN+G KHEAGYDAFMTGC+FAQAC+HLG DFKQ S ++ A NEKL +++N LYLSWT
Sbjct: 447 NWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWTR 506
Query: 361 GEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTS 420
G+II+L TG+ +++ +K K +E IV++W FP LKA I+ECI K +G S
Sbjct: 507 GDIIDLRTGHSNADNWRVSKFK-------YENIVLIWNFPRKLKARGIKECICKAFGSAS 559
Query: 421 VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPLAKLLEGGNTCAASYE 480
V SVYHVD++AVFV F +E+V FL LK L+ ++ P+SVLHPL+K+LEGGNT AA YE
Sbjct: 560 VTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYE 619
Query: 481 TYKEICSSTVSKVLFADQAKAVGIKWKTK 509
YKEICSS VS+V+F+DQA+ VG+K +T+
Sbjct: 620 AYKEICSSHVSEVMFSDQAETVGVKSRTR 648
>sp|Q8W4C3|PARNL_ARATH Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana
GN=At3g25430 PE=2 SV=1
Length = 618
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 130/534 (24%), Positives = 231/534 (43%), Gaps = 100/534 (18%)
Query: 4 LAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDI 63
+A+ FDFN CI+EG+SYLSR QE + + +S+ S + DT
Sbjct: 139 MAREGFDFNICIYEGISYLSRAQESASKFLSENPILADSVTVSSSPATVADT-------- 190
Query: 64 LFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIF-----FKMRPAISLNGFT 118
+F R++ R+ W + D GS+ +D + + R ++++ +
Sbjct: 191 VFVGRIRSRVKNWRQSCI---DSGSKTGD--DDLVSSLRRLVLGSEQYGSRLCLTIDVCS 245
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNV-IVYIESESDKKMLMKEVKDEQKIDAE 177
Q+ LI ++ + D+ L V+ ++ +Q V V++ S+ DK + +E+KD +K +
Sbjct: 246 ERQVQLILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKEEN- 304
Query: 178 MSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 237
+ GFR V+D +SS +K +V N D I++KF GPLP ++F SS++ FP+
Sbjct: 305 ---RRVRGFREVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPN 361
Query: 238 IIDTKILLNSNSILQQ--RMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVD 295
++D + S L + + +SL++ F+ V+VEV
Sbjct: 362 VVDLSQFMKEISPLSNISNLPAAMSSLNRFFA---------------------PVDVEV- 399
Query: 296 DIRSSNWNSGVKHEAGY-----DAFMTGCVFAQACSHLGIDFKQQSSSEN---LAHNEKL 347
+N VK + G+ +A M +FA+ C+ D S+E+ LA +
Sbjct: 400 ----ANQGCPVKLDEGHQSHGQNAVMISQLFAKLCTIQKSDLSTIQSNEDFQALASD--- 452
Query: 348 REHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWD 407
EH N + N N+ ++ S ++S E +V +WG + A
Sbjct: 453 -EHANSVTSCSKNAGDENVKVWSKNSRRVSS------------ENLVFIWGLGKKMTAAK 499
Query: 408 IRECISKVYGPTSV--ISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVLHPL 465
++ + K + P V ++D ++ + F + FL + ++ + S+ +
Sbjct: 500 LKNVLQKSH-PVFAREFDVKYIDRSSAILVFWESGPSETFLSAVNNEEQLDG--SLREMV 556
Query: 466 AKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTKE 519
A+ L G A YETYK C ++ F W+ L ES DK E
Sbjct: 557 AEGLRG-----AGYETYKRAC-----RLGF----------WEADLAESLDKALE 590
>sp|Q90ZA1|PARN_XENLA Poly(A)-specific ribonuclease PARN OS=Xenopus laevis GN=parn PE=1
SV=1
Length = 631
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 116/450 (25%), Positives = 184/450 (40%), Gaps = 80/450 (17%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHS-----LKEIRDT 55
+DFLA FDFN G+ YL++E+E + + YED S + +
Sbjct: 113 IDFLANQGFDFNKVFRNGIPYLNQEEE----RVLRDQYEDRRSQSNGASTMSYISPNSSK 168
Query: 56 HLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLN 115
+IPD + D++ E + L+N + V+P
Sbjct: 169 TPVSIPDE--QKGFIDKVVERVEDFLKNEQKSMNVEPC---------------------- 204
Query: 116 GFTSHQLLLI-QLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKM-LMKEVKDEQK 173
T +Q LI Q + K+ + + V E VI ++ E K+M K+ K+ ++
Sbjct: 205 --TGYQRKLIYQTLNWKYPRGIHVETVESEKKERYIVISKVDEEERKRMEQQKQAKEREE 262
Query: 174 IDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNK 233
+D ++GF +I +SS KL+VGHN LD+ H +FF LP EF N
Sbjct: 263 LDD------AVGFSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNC 316
Query: 234 YFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE 293
FP ++DTK++ ++N F + +L L P +V+
Sbjct: 317 VFPRVLDTKLMASTN----------------PFKEIIYNTSLAELEKRLKEAPFKPPKVD 360
Query: 294 -VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVN 352
+ +S N S HEAGYDA++TG F ++LG F ++ +R N
Sbjct: 361 SAEGFQSYNTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKDYVSCRSKIVRPFFN 419
Query: 353 LLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECI 412
L+L I+++ N L KR N V+ FP K D+ +
Sbjct: 420 KLFLM----RIMDIPYLNLEGPDLQP-KRDN----------VLHVTFPKEWKTSDLYQLF 464
Query: 413 SKVYGPTSVISVYHVDETAVFVQFSRAEMV 442
S +G I V +D+T+ FV S+ E V
Sbjct: 465 S-AFG---NIQVSWIDDTSAFVSLSQPEQV 490
>sp|Q7ZU92|PARN_DANRE Poly(A)-specific ribonuclease PARN OS=Danio rerio GN=parn PE=1 SV=2
Length = 660
Score = 95.9 bits (237), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 109/444 (24%), Positives = 187/444 (42%), Gaps = 69/444 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + S T + N+
Sbjct: 113 IDFLASQGFDFNKVFRSGIPYLNQEEECQLREQYEERRGQMNGAGPVSYTPPSGTGVCNV 172
Query: 61 PDILFAERMKDR-LSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS 119
P+ +R R + E + LL+N D+ +++P GF
Sbjct: 173 PE---DQREFIRSVEEKVEALLKNTDQTLDLEP---------------------CTGF-- 206
Query: 120 HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
+ L+ Q + K+ K L V + + + I D++ +E + +Q+ +
Sbjct: 207 QRKLIYQTLNSKYSKGL---HVEALETEKKERFIQISKVDDEERRRREQQKQQR--EQEE 261
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++GF VI +S KL+VGHN LD+ H +F GPLP ++F FP ++
Sbjct: 262 LNDAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLL 321
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDD-IR 298
DTK++ + ++ F + +L L +P E + ++
Sbjct: 322 DTKLMAS----------------TQPFKEIIHNTSLAELHKQLRQKPFRPPTTECPEGLQ 365
Query: 299 SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSW 358
S + ++ HEAGYDAF+TG F ++LG F S A ++ L N L+L
Sbjct: 366 SYDTSTEQLHEAGYDAFITGLCFISMANYLG-SFLTPPKSHISARSKLLEPFYNKLFLM- 423
Query: 359 TNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGP 418
+I++ N + L +++H V+ FP K D+ + S +G
Sbjct: 424 ---RVIDIPYLNMSGPDL--QPKRDH---------VLYVTFPKEWKTSDLYQLFS-AFG- 467
Query: 419 TSVISVYHVDETAVFVQFSRAEMV 442
I V VD+T+ FV S+ E V
Sbjct: 468 --NIQVSWVDDTSAFVSLSQTEQV 489
>sp|P69341|PARN_BOVIN Poly(A)-specific ribonuclease PARN OS=Bos taurus GN=PARN PE=1 SV=2
Length = 638
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 102/444 (22%), Positives = 181/444 (40%), Gaps = 67/444 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHL-FN 59
+DFLA FDFN G+ YL++E+E + + + + S +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYTSPNTSKCPVT 172
Query: 60 IPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTS 119
IPD ++ D++ E + LL++ + + + P GF
Sbjct: 173 IPDD--QKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF-- 208
Query: 120 HQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 209 QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE-----E 263
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP ++
Sbjct: 264 LNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLL 323
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIR 298
DTK++ + ++ F + +L L P +VE +
Sbjct: 324 DTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFP 367
Query: 299 SSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSW 358
S + S HEAGYDA++TG F ++LG F S A ++ + N L+L
Sbjct: 368 SYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKSHVSARSKLIEPFFNKLFLM- 425
Query: 359 TNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGP 418
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 426 ---RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG- 469
Query: 419 TSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 470 --NIQISWIDDTSAFVSLSQPEQV 491
>sp|Q5RC51|PARN_PONAB Poly(A)-specific ribonuclease PARN OS=Pongo abelii GN=PARN PE=2
SV=1
Length = 639
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 69/445 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 169
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 170 PVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 208
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 209 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 262
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 263 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRL 322
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 323 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFSPPKVESAEGF 366
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 367 PSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM 425
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 426 ----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG 469
Query: 418 PTSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 470 ---NIQISWIDDTSAFVSLSQPEQV 491
>sp|O95453|PARN_HUMAN Poly(A)-specific ribonuclease PARN OS=Homo sapiens GN=PARN PE=1
SV=1
Length = 639
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 69/445 (15%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+DFLA FDFN G+ YL++E+E + + + E S + +
Sbjct: 113 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---EKRSQANGAGALSYVSPNTSKC 169
Query: 61 PDILFAERMK--DRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFT 118
P + ++ K D++ E + LL++ + + + P GF
Sbjct: 170 PVTIPEDQKKFIDQVVEKIEDLLQSEENKN-----------------LDLEPC---TGF- 208
Query: 119 SHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEM 178
+ L+ Q + K+ K + + E VI ++ E K+ ++ EQ+
Sbjct: 209 -QRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----- 262
Query: 179 SIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHI 238
+ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP +
Sbjct: 263 ELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRL 322
Query: 239 IDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDI 297
+DTK++ + ++ F + +L L P +VE +
Sbjct: 323 LDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGF 366
Query: 298 RSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357
S + S HEAGYDA++TG F ++LG F A ++ + N L+L
Sbjct: 367 PSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFLM 425
Query: 358 WTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYG 417
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 426 ----RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG 469
Query: 418 PTSVISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 470 ---NIQISWIDDTSAFVSLSQPEQV 491
>sp|Q5R6R6|PNDC1_PONAB Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
OS=Pongo abelii GN=PNLDC1 PE=2 SV=1
Length = 520
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 147/329 (44%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W +R +
Sbjct: 101 VQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH------DILTGNW----RVRSS----- 144
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
PD + + D ++ WL L + D ++L G T
Sbjct: 145 PDKDQIKVVIDEVTRWLD-LAKEGD-------------------------WMTLPGITGF 178
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ ++ L+ G V+V S+ + L D + E
Sbjct: 179 QAFEVQLVLRQALPNIWTVLKDEG-------VVVKKVSKQHRWYLQNTSCDRESCWKENI 231
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +I
Sbjct: 232 LLSARGFSAFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLI 291
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LSK + VL + +K++ + + + E V+
Sbjct: 292 DTKSV--TKDIWKEMNFPRVSNLSKVYEVLNSDLN-PTKNSGPEIVHASRCEKYVE---- 344
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 345 ----TKCPHEAAYDAFLCGSVLLKV-AHL 368
>sp|Q8NA58|PNDC1_HUMAN Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
OS=Homo sapiens GN=PNLDC1 PE=2 SV=2
Length = 520
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 147/329 (44%), Gaps = 62/329 (18%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL +Y F++N + G+ Y++ EQE K ++H D +W +R +
Sbjct: 101 VQFLNQYGFNYNKFLKNGIPYMNEEQEKK-IRH------DILTGNW----RVRSS----- 144
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSH 120
PD + + D ++ WL L + D ++L G T
Sbjct: 145 PDKDQIKVVIDEVTRWLE-LAKEGD-------------------------WMTLPGITGF 178
Query: 121 QLLLIQLVVRKHFKDL-AYLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
Q +QLV+R+ ++ L+ G V+V S+ + L D + E
Sbjct: 179 QAFEVQLVLRQALPNIWTVLKDEG-------VVVKKVSKQHRWYLQNTSCDRESCWKENI 231
Query: 180 IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHII 239
+ ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +I
Sbjct: 232 LLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLI 291
Query: 240 DTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRS 299
DTK + + I ++ ++LS+ + VL + +K++ + + + E V+
Sbjct: 292 DTKSV--TKDIWKEMNFPRVSNLSEVYEVLNSDLN-PTKNSGPEIVHASRCEKYVE---- 344
Query: 300 SNWNSGVKHEAGYDAFMTGCVFAQACSHL 328
+ HEA YDAF+ G V + +HL
Sbjct: 345 ----TKCPHEAAYDAFLCGSVLLKV-AHL 368
>sp|Q8VDG3|PARN_MOUSE Poly(A)-specific ribonuclease PARN OS=Mus musculus GN=Parn PE=1
SV=1
Length = 624
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 37/261 (14%)
Query: 183 SIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTK 242
++GF VI +++ KL+VGHN LD+ H +F+ PLP EF FP ++DTK
Sbjct: 260 AVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK 319
Query: 243 ILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVE-VDDIRSSN 301
++ + ++ F + +L L P +VE + S +
Sbjct: 320 LMAS----------------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYD 363
Query: 302 WNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNG 361
S HEAGYDA++TG F ++LG + A ++ + N L+L
Sbjct: 364 TASEQLHEAGYDAYITGLCFISMANYLGSLLSPPKMCVS-ARSKLIEPFFNKLFLM---- 418
Query: 362 EIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSV 421
++++ N L +++H V+ FP K D+ + S +G
Sbjct: 419 RVMDIPYLNLEGPDL--QPKRDH---------VLHVTFPKEWKTSDLYQLFS-AFG---N 463
Query: 422 ISVYHVDETAVFVQFSRAEMV 442
I + +D+T+ FV S+ E V
Sbjct: 464 IQISWIDDTSAFVSLSQPEQV 484
>sp|O94386|YGS9_SCHPO Uncharacterized protein C29A10.09c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC29A10.09c PE=3 SV=1
Length = 427
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 139/327 (42%), Gaps = 44/327 (13%)
Query: 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNI 60
+ FL + FDFN + EGV YLSR +E + VN D D S+ + D
Sbjct: 108 IKFLIQQGFDFNKQLTEGVPYLSRIEERNLIDKVNERSTD---DLTSSILDACDE----- 159
Query: 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFK-MRPAISLNGFTS 119
+IL R +++ WL L S + SK T + +R AI
Sbjct: 160 -EILVDAR--NQIKNWLSSEL-----------SHSTSKYLNITTSNRFIRKAI------- 198
Query: 120 HQLLLIQLVVRKHFKDLAYLRV--SGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAE 177
L+ I+ K + +L+V + ENS +Q S + K L +++ +Q I
Sbjct: 199 QSLVKIEFPTLKSYPKRTFLQVRKAIENSTTQC------SATSKSELKEDIASDQLILNN 252
Query: 178 MS-IKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFP 236
++ IK ++G RH+ D + +KK +V HN D+ +++S F G +P T EF F
Sbjct: 253 LNLIKQNVGLRHLWDYILKKKKSVVCHNGMADLVYLFSLFEGKVPETILEFSELCLSSFK 312
Query: 237 HIIDTKILLNSNSILQQRMKKSSTSLSKAFS-VLCPQIALGSKSTHLALQPSVKVEVEVD 295
I DTK+L + LQ T L S + P + S S + + +E
Sbjct: 313 SIYDTKLLYLKSDDLQHVSDGIPTDLLSLVSKISLPPVPSNSSSQRSNVSLNSLIECPYK 372
Query: 296 DIRSSNWNSGVKHEAGYDAFMTGCVFA 322
+ S HEAG D++ T +F
Sbjct: 373 SMMSRKR----PHEAGKDSYDTALLFV 395
>sp|P61708|SYA_TREDE Alanine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=alaS PE=3 SV=1
Length = 600
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 124 LIQLVVRKHFKDLA----YLRVSGENSCSQNVIVYIESESDKKMLMKEVKDEQKIDAEMS 179
LI+ VR H K L +L V +QN Y E + ++ +++ E+K E+ E
Sbjct: 314 LIRRAVR-HGKKLGIDGNFLSVPASAVIAQNAGFYTELKENETLILTELKAEEDKFLETL 372
Query: 180 IKASIGFRHVI-DLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAE 225
K F ++ +LL + KK+I G F +Y + P+ LT E
Sbjct: 373 KKGEAEFEKMLPNLLKNPKKIIPGRMAF----KLYDTYGFPIELTEE 415
>sp|B0BC28|SYP_CHLTB Proline--tRNA ligase OS=Chlamydia trachomatis serovar L2b (strain
UCH-1/proctitis) GN=proS PE=3 SV=1
Length = 581
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 11 FNACIHEGVSYLSREQEDKALKHVNSTYED---ESLDSWHSLKEIRDTHLFNIPDILFAE 67
+ A + E + Y+ +++E+KA+ + T+E+ E + W + +E HL+ I F +
Sbjct: 86 WKAFLSEKLLYVLKDRENKAM-CLAPTHEEVVSEFVAQWLTGREQLPIHLYQI-GTKFRD 143
Query: 68 RMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPA 111
++ R GL+R ++ E +F+DS +Q E + K+R A
Sbjct: 144 EIRPRF-----GLMRAKEFLMEDSYTFSDSPEQMEEQYAKLRLA 182
>sp|B0B7W3|SYP_CHLT2 Proline--tRNA ligase OS=Chlamydia trachomatis serovar L2 (strain
434/Bu / ATCC VR-902B) GN=proS PE=3 SV=1
Length = 581
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 11 FNACIHEGVSYLSREQEDKALKHVNSTYED---ESLDSWHSLKEIRDTHLFNIPDILFAE 67
+ A + E + Y+ +++E+KA+ + T+E+ E + W + +E HL+ I F +
Sbjct: 86 WKAFLSEKLLYVLKDRENKAM-CLAPTHEEVVSEFVAQWLTGREQLPIHLYQI-GTKFRD 143
Query: 68 RMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPA 111
++ R GL+R ++ E +F+DS +Q E + K+R A
Sbjct: 144 EIRPRF-----GLMRAKEFLMEDSYTFSDSPEQMEEQYAKLRLA 182
>sp|P36431|SYP_CHLTR Proline--tRNA ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=proS PE=3 SV=2
Length = 581
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 11 FNACIHEGVSYLSREQEDKALKHVNSTYED---ESLDSWHSLKEIRDTHLFNIPDILFAE 67
+ A + E + Y+ +++E+KA+ + T+E+ E + W + +E HL+ I F +
Sbjct: 86 WKAFLSEKLLYVLKDRENKAM-CLAPTHEEVVSEFVAQWLTGREQLPIHLYQI-GTKFRD 143
Query: 68 RMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPA 111
++ R GL+R ++ E +F+DS +Q E + K+R A
Sbjct: 144 EIRPRF-----GLMRAKEFLMEDSYTFSDSPEQMEEQYAKLRLA 182
>sp|Q3KLW0|SYP_CHLTA Proline--tRNA ligase OS=Chlamydia trachomatis serovar A (strain
HAR-13 / ATCC VR-571B) GN=proS PE=3 SV=1
Length = 581
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 11 FNACIHEGVSYLSREQEDKALKHVNSTYED---ESLDSWHSLKEIRDTHLFNIPDILFAE 67
+ A + E + Y+ +++E+KA+ + T+E+ E + W + +E HL+ I F +
Sbjct: 86 WKAFLSEKLLYVLKDRENKAM-CLAPTHEEVVSEFVAQWLTGREQLPIHLYQI-GTKFRD 143
Query: 68 RMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPA 111
++ R GL+R ++ E +F+DS +Q E + K+R A
Sbjct: 144 EIRPRF-----GLMRAKEFLMEDSYTFSDSPEQMEEQYAKLRLA 182
>sp|A7TL17|YD156_VANPO WD repeat-containing protein Kpol_530p43 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=Kpol_530p43
PE=3 SV=1
Length = 536
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 349 EHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECI-------VIVWGFPS 401
E+ N+L ++ +GE +N+ + E ++SN R+ KI I +
Sbjct: 312 ENPNVLLMTTLSGEFVNIDLREKIGEQISSNLRRLSDKKIGSFSINPNRPYEIATGSLDR 371
Query: 402 HLKAWDIRECISKV-------YGPTSVISVY 425
LK WDIR+ + K Y ++SVY
Sbjct: 372 TLKIWDIRKLVKKPEWSQYEDYDSCEIVSVY 402
>sp|P23647|FUSED_DROME Serine/threonine-protein kinase fused OS=Drosophila melanogaster
GN=fu PE=1 SV=2
Length = 805
Score = 33.1 bits (74), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 32/229 (13%)
Query: 152 IVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSS-EKK---LIVGHNCFL 207
+V I+ S + KE+K+ ++ E I+A + HVI+++ S E K +V +
Sbjct: 29 VVAIKVISKRGRATKELKNLRR---ECDIQARLKHPHVIEMIESFESKTDLFVVTEFALM 85
Query: 208 DIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFS 267
D+ H Y + G + EE V H++ L+SN IL + +K + L K
Sbjct: 86 DL-HRYLSYNGAM---GEEPARRVTG---HLVSALYYLHSNRILHRDLKPQNVLLDKNMH 138
Query: 268 V------LCPQIALGS------KSTHLALQPSVKVEVEVDDIRSSNWNSG-VKHE--AGY 312
L + LG+ K T L + P + E D + W+ G + +E AG
Sbjct: 139 AKLCDFGLARNMTLGTHVLTSIKGTPLYMAPELLAEQPYDH-HADMWSLGCIAYESMAGQ 197
Query: 313 DAFMTGCV--FAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT 359
F + + H + + +SE + + L E L +SWT
Sbjct: 198 PPFCASSILHLVKMIKHEDVKWPSTLTSECRSFLQGLLEKDPGLRISWT 246
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205,711,668
Number of Sequences: 539616
Number of extensions: 8368280
Number of successful extensions: 22791
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 22752
Number of HSP's gapped (non-prelim): 38
length of query: 573
length of database: 191,569,459
effective HSP length: 123
effective length of query: 450
effective length of database: 125,196,691
effective search space: 56338510950
effective search space used: 56338510950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)