Query 008236
Match_columns 573
No_of_seqs 196 out of 432
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 21:24:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d45_A Poly(A)-specific ribonu 100.0 1.6E-73 5.5E-78 626.2 23.0 379 1-451 115-495 (507)
2 2a1r_A Poly(A)-specific ribonu 100.0 3.1E-60 1.1E-64 511.4 13.3 311 1-359 113-427 (430)
3 4gmj_B CCR4-NOT transcription 99.8 4.2E-21 1.4E-25 196.3 11.6 129 180-357 127-262 (285)
4 2d5r_A CCR4-NOT transcription 99.8 2.7E-20 9.1E-25 187.2 12.7 113 180-329 117-236 (252)
5 2p51_A SPCC18.06C protein; DED 99.8 2.6E-20 8.8E-25 192.8 12.3 128 180-357 138-272 (333)
6 1uoc_A POP2; hydrolase, DEDD n 99.8 5.1E-19 1.7E-23 180.9 13.4 139 180-357 132-285 (289)
7 1whv_A Poly(A)-specific ribonu 99.5 5.4E-14 1.8E-18 121.2 8.2 68 363-450 3-70 (100)
8 3ctr_A Poly(A)-specific ribonu 99.3 7.1E-13 2.4E-17 114.6 5.7 57 390-450 4-60 (101)
9 1ug8_A Poly(A)-specific ribonu 99.0 3.1E-10 1E-14 96.0 7.5 73 61-160 8-80 (87)
10 2gui_A DNA polymerase III epsi 96.4 0.016 5.5E-07 54.6 10.2 102 180-326 76-183 (194)
11 1zbh_A 3'-5' exonuclease ERI1; 95.8 0.034 1.2E-06 56.5 9.9 104 180-328 147-263 (299)
12 2p1j_A POLIII, DNA polymerase 95.7 0.041 1.4E-06 51.7 9.6 98 180-327 73-175 (186)
13 2dhg_A TRNA selenocysteine ass 95.7 0.055 1.9E-06 45.3 9.3 62 390-453 8-75 (104)
14 3v9w_A Ribonuclease T; DEDD nu 95.6 0.025 8.5E-07 55.1 7.8 86 196-328 133-221 (235)
15 1w0h_A 3'-5' exonuclease ERI1; 95.5 0.032 1.1E-06 52.8 7.9 86 198-328 106-195 (204)
16 1wlj_A Interferon stimulated g 95.4 0.022 7.4E-07 53.9 6.4 101 183-329 67-170 (189)
17 1x4c_A Splicing factor, argini 95.4 0.057 2E-06 45.9 8.5 58 391-451 15-72 (108)
18 2dnq_A RNA-binding protein 4B; 95.3 0.089 3E-06 43.0 9.1 58 392-453 9-66 (90)
19 2f96_A Ribonuclease T; RNAse, 95.2 0.044 1.5E-06 53.0 8.1 85 196-328 125-213 (224)
20 1x5s_A Cold-inducible RNA-bind 95.2 0.1 3.5E-06 43.5 9.2 59 391-452 12-77 (102)
21 1x5u_A Splicing factor 3B subu 95.2 0.077 2.6E-06 44.5 8.5 60 391-453 15-81 (105)
22 2dnm_A SRP46 splicing factor; 95.2 0.062 2.1E-06 45.0 7.8 59 391-452 13-78 (103)
23 2dgt_A RNA-binding protein 30; 95.1 0.088 3E-06 43.2 8.6 57 391-451 10-66 (92)
24 2cqc_A Arginine/serine-rich sp 95.1 0.074 2.5E-06 43.6 8.0 59 390-451 14-79 (95)
25 2ytc_A PRE-mRNA-splicing facto 95.1 0.05 1.7E-06 43.8 6.8 55 392-449 13-68 (85)
26 2dnp_A RNA-binding protein 14; 95.1 0.068 2.3E-06 43.7 7.7 56 392-451 10-65 (90)
27 1why_A Hypothetical protein ri 95.0 0.1 3.5E-06 43.2 8.6 58 391-451 17-75 (97)
28 1s79_A Lupus LA protein; RRM, 95.0 0.097 3.3E-06 44.7 8.7 54 391-447 11-70 (103)
29 1uoc_A POP2; hydrolase, DEDD n 94.9 0.0052 1.8E-07 62.8 0.4 22 1-22 118-139 (289)
30 2cph_A RNA binding motif prote 94.9 0.1 3.5E-06 43.8 8.4 58 391-451 15-81 (107)
31 2lkz_A RNA-binding protein 5; 94.8 0.043 1.5E-06 46.4 5.8 61 390-451 8-75 (95)
32 3bs9_A Nucleolysin TIA-1 isofo 94.8 0.099 3.4E-06 42.1 7.8 57 392-451 7-70 (87)
33 4gmj_B CCR4-NOT transcription 94.7 0.0043 1.5E-07 63.3 -0.6 23 1-23 113-135 (285)
34 2dgo_A Cytotoxic granule-assoc 94.7 0.11 3.9E-06 44.2 8.5 58 391-451 15-79 (115)
35 2dnz_A Probable RNA-binding pr 94.7 0.14 4.8E-06 42.0 8.7 64 392-458 6-76 (95)
36 3u3y_B Three prime repair exon 94.7 0.066 2.3E-06 55.3 8.1 89 198-328 119-215 (314)
37 3beg_B Splicing factor, argini 94.7 0.089 3E-06 45.4 7.8 60 391-453 16-75 (115)
38 2dgv_A HnRNP M, heterogeneous 94.7 0.16 5.6E-06 41.3 9.0 58 392-452 9-71 (92)
39 2do4_A Squamous cell carcinoma 94.6 0.12 4.3E-06 42.8 8.3 58 391-451 17-80 (100)
40 2dnh_A Bruno-like 5, RNA bindi 94.5 0.19 6.5E-06 42.0 9.3 58 391-451 15-78 (105)
41 2jrs_A RNA-binding protein 39; 94.5 0.26 9.1E-06 42.0 10.3 57 392-451 27-90 (108)
42 2d5r_A CCR4-NOT transcription 94.5 0.0066 2.3E-07 60.9 0.0 23 1-23 103-125 (252)
43 2d9p_A Polyadenylate-binding p 94.5 0.13 4.4E-06 43.0 8.1 59 391-452 15-78 (103)
44 1p27_B RNA-binding protein 8A; 94.4 0.2 6.7E-06 42.0 9.2 58 391-451 23-87 (106)
45 2kvi_A Nuclear polyadenylated 94.4 0.17 5.9E-06 41.9 8.7 58 391-452 10-68 (96)
46 2p51_A SPCC18.06C protein; DED 94.4 0.0082 2.8E-07 62.4 0.4 22 1-22 124-145 (333)
47 2cpz_A CUG triplet repeat RNA- 94.3 0.14 4.6E-06 43.8 8.1 57 392-451 26-89 (115)
48 1wex_A Hypothetical protein (r 94.3 0.16 5.4E-06 43.6 8.4 58 391-451 15-73 (104)
49 1x4a_A Splicing factor, argini 94.3 0.11 3.8E-06 44.0 7.4 58 391-451 22-83 (109)
50 3mxm_B Three prime repair exon 94.3 0.1 3.4E-06 51.5 8.1 88 198-328 119-215 (242)
51 2kt5_A RNA and export factor-b 94.3 0.19 6.5E-06 43.6 9.0 60 390-452 34-99 (124)
52 3ulh_A THO complex subunit 4; 94.3 0.13 4.3E-06 43.3 7.6 59 390-451 28-92 (107)
53 2ywk_A Putative RNA-binding pr 94.3 0.16 5.4E-06 41.6 8.1 58 391-451 16-79 (95)
54 1whw_A Hypothetical protein ri 94.3 0.12 4.2E-06 42.7 7.4 57 392-451 9-72 (99)
55 2cqi_A Nucleolysin TIAR; RNA r 94.3 0.17 6E-06 42.2 8.4 58 391-451 15-77 (103)
56 2e5j_A Methenyltetrahydrofolat 94.2 0.23 7.7E-06 41.1 9.0 60 391-452 19-79 (97)
57 1zbu_A ERI-1 homolog, 3'-5' ex 94.2 0.14 4.8E-06 53.4 9.3 104 180-328 197-313 (349)
58 2fy1_A RNA-binding motif prote 94.2 0.17 5.9E-06 43.7 8.5 57 392-451 8-70 (116)
59 3lqv_A PRE-mRNA branch site pr 94.2 0.22 7.4E-06 42.4 9.0 58 391-451 8-69 (115)
60 2cq0_A Eukaryotic translation 94.2 0.1 3.5E-06 43.6 6.8 58 391-451 15-79 (103)
61 3p5t_L Cleavage and polyadenyl 94.2 0.12 4.1E-06 42.3 7.1 59 394-453 4-69 (90)
62 2dgp_A Bruno-like 4, RNA bindi 94.1 0.21 7.3E-06 41.8 8.8 58 391-451 13-77 (106)
63 2e44_A Insulin-like growth fac 94.1 0.14 4.8E-06 42.1 7.5 58 391-451 15-76 (96)
64 2dgs_A DAZ-associated protein 94.1 0.19 6.4E-06 41.7 8.3 57 391-451 10-73 (99)
65 3s7r_A Heterogeneous nuclear r 94.1 0.15 5.1E-06 41.1 7.5 54 392-448 12-72 (87)
66 2cq3_A RNA-binding protein 9; 94.1 0.19 6.5E-06 42.0 8.3 58 391-451 15-77 (103)
67 2hvz_A Splicing factor, argini 94.1 0.2 6.7E-06 41.7 8.3 56 394-452 3-60 (101)
68 2kxn_B Transformer-2 protein h 94.0 0.15 5.1E-06 45.2 7.9 58 391-451 46-110 (129)
69 2e5h_A Zinc finger CCHC-type a 94.0 0.14 4.9E-06 41.8 7.3 58 391-451 16-80 (94)
70 4a8x_A RNA-binding protein wit 94.0 0.12 4.2E-06 41.5 6.8 56 393-451 6-69 (88)
71 2ad9_A Polypyrimidine tract-bi 94.0 0.17 5.7E-06 44.9 8.1 57 391-450 31-88 (119)
72 3ex7_B RNA-binding protein 8A; 94.0 0.17 5.9E-06 43.8 8.1 60 391-453 22-88 (126)
73 1oo0_B CG8781-PA, drosophila Y 94.0 0.15 5E-06 43.2 7.5 58 391-451 26-90 (110)
74 3md1_A Nuclear and cytoplasmic 94.0 0.14 4.9E-06 40.7 7.1 56 393-451 3-65 (83)
75 2cpd_A Apobec-1 stimulating pr 93.9 0.27 9.1E-06 40.8 8.9 59 391-451 15-73 (99)
76 3ucg_A Polyadenylate-binding p 93.9 0.15 5E-06 41.2 7.1 56 392-451 7-69 (89)
77 2cpj_A Non-POU domain-containi 93.9 0.21 7.2E-06 41.4 8.2 59 391-452 15-74 (99)
78 2x1f_A MRNA 3'-END-processing 93.8 0.15 5E-06 42.2 7.0 57 392-451 3-66 (96)
79 2la4_A Nuclear and cytoplasmic 93.8 0.2 6.8E-06 41.6 7.9 57 392-451 28-85 (101)
80 2cqd_A RNA-binding region cont 93.8 0.17 6E-06 43.2 7.7 58 391-451 17-81 (116)
81 2jvo_A Nucleolar protein 3; nu 93.8 0.16 5.6E-06 43.4 7.5 57 391-451 31-87 (108)
82 1uaw_A Mouse-musashi-1; RNP-ty 93.8 0.13 4.6E-06 40.3 6.4 54 394-450 3-63 (77)
83 2div_A TRNA selenocysteine ass 93.7 0.31 1.1E-05 40.2 8.9 58 392-451 10-74 (99)
84 4f25_A Polyadenylate-binding p 93.7 0.15 5.1E-06 43.9 7.1 56 393-451 7-67 (115)
85 2cq1_A PTB-like protein L; RRM 93.7 0.19 6.4E-06 42.9 7.5 57 391-450 15-72 (101)
86 1x4h_A RNA-binding protein 28; 93.6 0.19 6.4E-06 42.4 7.6 57 391-450 15-78 (111)
87 2krb_A Eukaryotic translation 93.6 0.19 6.6E-06 40.1 7.2 56 393-451 3-69 (81)
88 2cqg_A TDP-43, TAR DNA-binding 93.6 0.26 9E-06 41.0 8.3 54 391-447 15-75 (103)
89 1x5t_A Splicing factor 3B subu 93.6 0.12 4.1E-06 42.5 6.0 57 392-451 6-70 (96)
90 2lea_A Serine/arginine-rich sp 93.6 0.14 4.8E-06 45.6 6.9 58 391-451 47-111 (135)
91 1x4g_A Nucleolysin TIAR; struc 93.6 0.14 4.9E-06 43.3 6.7 58 391-451 25-83 (109)
92 3mdf_A Peptidyl-prolyl CIS-tra 93.6 0.17 5.8E-06 40.4 6.8 57 392-451 8-71 (85)
93 2mss_A Protein (musashi1); RNA 93.5 0.16 5.4E-06 39.8 6.4 51 394-447 2-59 (75)
94 3r27_A HnRNP L, heterogeneous 93.5 0.27 9.1E-06 42.3 8.2 58 391-451 21-79 (100)
95 2do0_A HnRNP M, heterogeneous 93.5 0.24 8.1E-06 42.1 7.9 57 392-451 16-78 (114)
96 2dgu_A Heterogeneous nuclear r 93.4 0.2 6.9E-06 41.9 7.3 56 392-451 12-67 (103)
97 2lxi_A RNA-binding protein 10; 93.4 0.079 2.7E-06 43.9 4.7 55 392-449 2-64 (91)
98 1y97_A Three prime repair exon 93.3 0.2 6.7E-06 48.6 7.9 87 198-328 114-210 (238)
99 2khc_A Testis-specific RNP-typ 93.2 0.19 6.4E-06 43.0 6.9 58 391-451 40-104 (118)
100 1h2v_Z 20 kDa nuclear CAP bind 93.1 0.27 9.4E-06 44.3 8.2 58 391-451 39-103 (156)
101 1wf1_A RNA-binding protein RAL 93.1 0.31 1.1E-05 41.3 8.0 56 392-451 28-84 (110)
102 2la6_A RNA-binding protein FUS 93.1 0.48 1.6E-05 39.2 9.1 60 391-451 13-85 (99)
103 1x4e_A RNA binding motif, sing 93.1 0.18 6.3E-06 40.4 6.3 57 392-451 6-69 (85)
104 1sjq_A Polypyrimidine tract-bi 93.0 0.21 7.3E-06 43.3 7.0 56 392-450 17-73 (105)
105 2dh8_A DAZ-associated protein 93.0 0.23 7.7E-06 41.6 7.0 54 392-448 17-77 (105)
106 1rk8_A CG8781-PA, CG8781-PA pr 93.0 0.27 9.1E-06 45.0 8.0 58 391-451 72-136 (165)
107 2cpi_A CCR4-NOT transcription 93.0 0.14 4.7E-06 43.8 5.6 60 390-452 14-86 (111)
108 1p1t_A Cleavage stimulation fa 93.0 0.39 1.3E-05 39.9 8.4 57 392-451 9-72 (104)
109 2cqh_A IGF-II mRNA-binding pro 93.0 0.24 8.4E-06 40.4 7.0 56 393-451 10-66 (93)
110 2dis_A Unnamed protein product 92.9 0.29 1E-05 41.1 7.6 57 392-450 9-73 (109)
111 2xnq_A Nuclear polyadenylated 92.9 0.29 9.9E-06 40.8 7.5 57 391-451 22-79 (97)
112 1whx_A Hypothetical protein ri 92.9 0.2 6.9E-06 43.0 6.6 58 391-451 10-68 (111)
113 2cpf_A RNA binding motif prote 92.9 0.34 1.1E-05 39.9 7.8 57 392-451 6-72 (98)
114 1x5o_A RNA binding motif, sing 92.9 0.29 9.9E-06 41.6 7.5 58 391-451 25-88 (114)
115 4fxv_A ELAV-like protein 1; RN 92.8 0.32 1.1E-05 40.9 7.7 56 393-451 21-83 (99)
116 1fxl_A Paraneoplastic encephal 92.8 0.32 1.1E-05 43.0 8.1 57 392-451 3-66 (167)
117 1u6f_A Tcubp1, RNA-binding pro 92.7 0.4 1.4E-05 42.2 8.5 59 392-453 43-108 (139)
118 2hzc_A Splicing factor U2AF 65 92.7 0.2 6.7E-06 40.3 5.9 58 392-451 7-74 (87)
119 2dng_A Eukaryotic translation 92.7 0.33 1.1E-05 40.5 7.6 56 391-451 15-77 (103)
120 1nu4_A U1A RNA binding domain; 92.6 0.26 8.9E-06 40.4 6.7 58 391-451 8-73 (97)
121 2ek1_A RNA-binding protein 12; 92.6 0.25 8.7E-06 40.3 6.6 59 392-451 16-79 (95)
122 3n9u_C Cleavage and polyadenyl 92.5 0.35 1.2E-05 44.3 8.2 59 392-451 56-121 (156)
123 1x4d_A Matrin 3; structural ge 92.5 0.25 8.6E-06 42.4 6.7 58 391-451 15-74 (102)
124 1wi8_A EIF-4B, eukaryotic tran 92.4 0.32 1.1E-05 40.7 7.1 56 391-451 15-78 (104)
125 2xri_A ERI1 exoribonuclease 3; 92.3 0.29 9.9E-06 47.3 7.6 23 305-327 191-213 (224)
126 2cqb_A Peptidyl-prolyl CIS-tra 92.2 0.27 9.2E-06 40.8 6.3 57 392-451 13-76 (102)
127 2f3j_A RNA and export factor b 92.1 0.54 1.9E-05 43.9 9.1 59 391-452 88-152 (177)
128 2e5g_A U6 snRNA-specific termi 92.0 0.42 1.4E-05 39.2 7.3 55 392-451 9-66 (94)
129 2i2y_A Fusion protein consists 91.9 0.61 2.1E-05 41.7 8.8 59 391-452 73-133 (150)
130 2dgw_A Probable RNA-binding pr 91.9 0.56 1.9E-05 38.0 7.9 56 391-451 10-71 (91)
131 2j76_E EIF-4B, EIF4B, eukaryot 91.9 0.24 8.1E-06 41.4 5.7 56 391-451 19-82 (100)
132 2err_A Ataxin-2-binding protei 91.9 0.41 1.4E-05 40.7 7.3 58 391-451 29-91 (109)
133 1x4f_A Matrin 3; structural ge 91.8 0.35 1.2E-05 42.3 6.9 63 386-451 20-84 (112)
134 2ku7_A MLL1 PHD3-CYP33 RRM chi 91.8 0.51 1.8E-05 41.2 8.0 58 391-451 63-127 (140)
135 2cq4_A RNA binding motif prote 91.7 0.31 1.1E-05 41.4 6.3 57 391-451 25-88 (114)
136 1wel_A RNA-binding protein 12; 91.7 0.39 1.3E-05 41.7 7.0 60 390-451 24-88 (124)
137 2cqp_A RNA-binding protein 12; 91.6 0.57 1.9E-05 38.5 7.7 60 391-451 15-79 (98)
138 1iqt_A AUF1, heterogeneous nuc 91.6 0.24 8.3E-06 38.6 5.1 52 394-448 2-60 (75)
139 2qfj_A FBP-interacting repress 91.5 0.61 2.1E-05 43.4 8.7 68 391-461 28-102 (216)
140 3s8s_A Histone-lysine N-methyl 91.5 0.5 1.7E-05 40.6 7.4 57 392-451 7-70 (110)
141 2cpx_A Hypothetical protein FL 91.4 0.94 3.2E-05 38.3 9.1 60 391-451 25-89 (115)
142 2kn4_A Immunoglobulin G-bindin 91.3 0.58 2E-05 42.0 8.1 59 391-452 70-135 (158)
143 3q2s_C Cleavage and polyadenyl 91.3 0.55 1.9E-05 45.7 8.4 59 392-451 69-134 (229)
144 2jwn_A Embryonic polyadenylate 91.3 0.34 1.2E-05 41.7 6.2 57 391-451 36-99 (124)
145 2xs2_A Deleted in azoospermia- 91.2 0.39 1.3E-05 39.9 6.3 54 391-447 9-68 (102)
146 2rs2_A Musashi-1, RNA-binding 91.2 0.42 1.4E-05 40.7 6.6 55 392-449 26-87 (109)
147 1b7f_A Protein (SXL-lethal pro 91.1 0.42 1.4E-05 42.5 6.8 57 392-451 4-67 (168)
148 1x4b_A Heterogeneous nuclear r 91.1 0.47 1.6E-05 40.4 6.9 55 391-448 27-88 (116)
149 2igi_A Oligoribonuclease; RNAs 91.0 0.78 2.7E-05 42.3 8.8 24 305-328 154-177 (180)
150 2adc_A Polypyrimidine tract-bi 91.0 0.45 1.5E-05 45.6 7.3 60 391-453 34-96 (229)
151 2nlw_A Eukaryotic translation 90.9 0.69 2.4E-05 38.9 7.6 58 391-451 15-83 (105)
152 2dnl_A Cytoplasmic polyadenyla 90.8 0.22 7.7E-06 42.6 4.5 56 392-451 9-74 (114)
153 3md3_A Nuclear and cytoplasmic 90.8 0.48 1.6E-05 41.9 6.9 57 393-452 2-64 (166)
154 3ns6_A Eukaryotic translation 90.7 0.48 1.6E-05 39.6 6.4 58 391-451 6-76 (100)
155 1l3k_A Heterogeneous nuclear r 90.6 0.77 2.6E-05 42.0 8.3 55 391-448 13-74 (196)
156 3cg7_A CRN-4, cell death-relat 90.5 0.39 1.3E-05 49.0 6.8 104 180-327 89-208 (308)
157 1wf0_A TDP-43, TAR DNA-binding 90.5 0.25 8.7E-06 40.0 4.4 51 392-445 6-58 (88)
158 3nmr_A Cugbp ELAV-like family 90.5 0.84 2.9E-05 40.7 8.3 58 391-451 95-158 (175)
159 2ki2_A SS-DNA binding protein 90.5 0.46 1.6E-05 38.4 5.9 55 393-451 3-64 (90)
160 3nmr_A Cugbp ELAV-like family 90.3 0.89 3E-05 40.5 8.2 56 393-451 5-69 (175)
161 2dgx_A KIAA0430 protein; RRM d 90.2 1.2 4E-05 36.7 8.3 57 392-451 10-74 (96)
162 2a3j_A U1 small nuclear ribonu 90.1 0.85 2.9E-05 40.4 7.8 59 391-452 29-95 (127)
163 2fc9_A NCL protein; structure 90.1 0.43 1.5E-05 39.6 5.5 57 391-451 15-75 (101)
164 1wez_A HnRNP H', FTP-3, hetero 90.0 0.78 2.7E-05 38.7 7.2 53 391-447 15-73 (102)
165 2lmi_A GRSF-1, G-rich sequence 89.9 0.54 1.8E-05 39.7 6.1 56 391-447 11-73 (107)
166 1fjc_A Nucleolin RBD2, protein 89.8 0.32 1.1E-05 39.9 4.5 57 391-451 16-75 (96)
167 3sde_A Paraspeckle component 1 89.5 1 3.4E-05 44.1 8.6 59 390-451 21-80 (261)
168 2diu_A KIAA0430 protein; struc 89.4 1.2 4.1E-05 38.2 7.7 60 393-455 11-72 (96)
169 2gbz_A Oligoribonuclease; ORN, 89.3 1.2 4.1E-05 41.9 8.7 24 305-328 158-181 (194)
170 1b7f_A Protein (SXL-lethal pro 89.3 1.6 5.6E-05 38.5 9.2 58 391-451 89-153 (168)
171 2qfj_A FBP-interacting repress 89.3 1.1 3.8E-05 41.6 8.3 58 392-452 126-190 (216)
172 2cpe_A RNA-binding protein EWS 89.1 0.77 2.6E-05 38.8 6.5 60 391-451 15-87 (113)
173 2g4b_A Splicing factor U2AF 65 89.0 1.2 4E-05 39.8 8.0 58 391-451 94-158 (172)
174 2fc8_A NCL protein; structure 88.9 0.77 2.6E-05 38.0 6.2 56 391-452 15-77 (102)
175 1fxl_A Paraneoplastic encephal 88.7 1.4 4.9E-05 38.7 8.3 58 391-451 88-152 (167)
176 1qm9_A Polypyrimidine tract-bi 88.7 0.85 2.9E-05 42.1 7.0 58 391-451 120-180 (198)
177 2jvr_A Nucleolar protein 3; RN 88.5 1.1 3.8E-05 38.8 7.2 59 392-453 29-91 (111)
178 3md3_A Nuclear and cytoplasmic 88.5 1.4 4.7E-05 38.8 8.0 58 391-451 87-151 (166)
179 2voo_A Lupus LA protein; RNA-b 88.3 0.85 2.9E-05 43.1 6.9 57 391-450 109-171 (193)
180 2cjk_A Nuclear polyadenylated 88.0 0.95 3.2E-05 40.2 6.7 54 392-448 4-64 (167)
181 1x5p_A Negative elongation fac 88.0 1.7 5.7E-05 35.7 7.7 56 391-451 15-71 (97)
182 3tyt_A Heterogeneous nuclear r 88.0 0.96 3.3E-05 43.0 7.0 59 392-451 124-187 (205)
183 2adc_A Polypyrimidine tract-bi 88.0 0.94 3.2E-05 43.3 7.0 57 392-451 152-211 (229)
184 2db1_A Heterogeneous nuclear r 87.9 0.85 2.9E-05 39.4 6.0 56 391-447 17-79 (118)
185 2dha_A FLJ20171 protein; RRM d 87.7 0.81 2.8E-05 40.4 5.8 56 392-448 24-87 (123)
186 3pgw_A U1-A; protein-RNA compl 87.5 1.3 4.5E-05 43.2 8.0 58 391-451 207-266 (282)
187 1qm9_A Polypyrimidine tract-bi 87.4 0.72 2.5E-05 42.6 5.6 59 392-453 4-65 (198)
188 2cq2_A Hypothetical protein LO 87.4 0.72 2.5E-05 40.5 5.3 57 392-451 26-85 (114)
189 1wg5_A Heterogeneous nuclear r 87.3 1.5 5.2E-05 36.7 7.1 55 391-448 15-76 (104)
190 3d2w_A TAR DNA-binding protein 87.0 0.79 2.7E-05 37.6 5.1 51 391-444 11-63 (89)
191 2cjk_A Nuclear polyadenylated 86.9 1.3 4.5E-05 39.3 6.9 54 391-447 87-147 (167)
192 4f02_A Polyadenylate-binding p 86.7 1.8 6.1E-05 40.9 8.1 58 392-452 16-80 (213)
193 3pgw_S U1-70K; protein-RNA com 86.6 1.1 3.6E-05 48.0 7.1 59 392-453 103-168 (437)
194 2yh0_A Splicing factor U2AF 65 86.6 1.9 6.5E-05 39.3 8.0 58 391-451 114-178 (198)
195 3egn_A RNA-binding protein 40; 86.6 1.6 5.5E-05 38.5 7.2 59 392-451 46-114 (143)
196 1fj7_A Nucleolin RBD1, protein 86.5 1.2 4E-05 36.8 5.9 56 392-451 18-79 (101)
197 1owx_A Lupus LA protein, SS-B, 86.1 1.2 4.2E-05 39.6 6.0 55 392-449 19-76 (121)
198 1sjr_A Polypyrimidine tract-bi 85.8 2.4 8.1E-05 39.6 8.2 56 393-451 48-106 (164)
199 2cpy_A RNA-binding protein 12; 85.7 1.5 5E-05 37.4 6.3 56 391-448 15-76 (114)
200 1wg1_A KIAA1579 protein, homol 85.7 1.1 3.6E-05 36.3 5.1 57 393-453 7-64 (88)
201 2bz2_A Negative elongation fac 84.6 3.2 0.00011 36.1 8.0 57 391-452 39-96 (121)
202 2hgl_A HNRPF protein, heteroge 84.4 1.8 6E-05 38.9 6.4 59 391-451 44-109 (136)
203 2g4b_A Splicing factor U2AF 65 84.4 2.6 8.8E-05 37.5 7.6 58 392-451 5-72 (172)
204 2m2b_A RNA-binding protein 10; 83.6 1.5 5.1E-05 38.3 5.5 58 392-451 24-88 (131)
205 2qxf_A Exodeoxyribonuclease I; 83.5 2.6 9E-05 45.8 8.5 104 188-327 87-200 (482)
206 1l3k_A Heterogeneous nuclear r 83.4 2.6 8.9E-05 38.3 7.3 54 392-448 105-165 (196)
207 2e5i_A Heterogeneous nuclear r 83.4 3.1 0.00011 36.8 7.5 55 394-451 28-84 (124)
208 3tyt_A Heterogeneous nuclear r 83.2 2.5 8.5E-05 40.1 7.3 58 392-452 5-65 (205)
209 3pgw_A U1-A; protein-RNA compl 83.1 3.5 0.00012 40.2 8.5 59 391-452 9-75 (282)
210 2dnn_A RNA-binding protein 12; 82.2 2.9 9.9E-05 35.9 6.7 53 391-447 16-74 (109)
211 4f02_A Polyadenylate-binding p 81.4 3.5 0.00012 38.8 7.6 57 392-451 104-165 (213)
212 3smz_A Protein raver-1, ribonu 80.7 4.2 0.00014 39.6 8.1 57 392-451 96-159 (284)
213 3zzy_A Polypyrimidine tract-bi 80.6 4.4 0.00015 36.3 7.5 56 393-451 30-88 (130)
214 2ghp_A U4/U6 snRNA-associated 80.3 3 0.0001 40.8 6.9 54 391-447 41-99 (292)
215 2ghp_A U4/U6 snRNA-associated 80.2 2.3 7.8E-05 41.7 6.0 57 391-451 210-275 (292)
216 2hgm_A HNRPF protein, heteroge 78.2 4.9 0.00017 35.5 7.0 54 391-448 42-103 (126)
217 3smz_A Protein raver-1, ribonu 78.2 4.6 0.00016 39.4 7.5 58 391-451 184-248 (284)
218 3sde_A Paraspeckle component 1 78.2 4.6 0.00016 39.3 7.5 57 392-451 97-159 (261)
219 3u1l_A PRE-mRNA-splicing facto 78.0 4.4 0.00015 40.0 7.2 57 392-451 135-201 (240)
220 2yh0_A Splicing factor U2AF 65 77.2 5.9 0.0002 35.9 7.5 57 393-451 6-72 (198)
221 1fje_B Nucleolin RBD12, protei 77.1 2.1 7.2E-05 38.4 4.3 55 391-451 99-158 (175)
222 2wbr_A GW182, gawky, LD47780P; 76.5 5 0.00017 33.8 6.1 56 394-451 10-65 (89)
223 2cpm_A Sperm-associated antige 73.2 3.5 0.00012 35.0 4.4 42 112-156 32-73 (94)
224 2lcw_A RNA-binding protein FUS 75.4 0.72 2.4E-05 39.3 0.0 59 392-451 8-79 (116)
225 1fje_B Nucleolin RBD12, protei 71.7 13 0.00043 33.1 8.1 59 391-451 13-75 (175)
226 2hgn_A Heterogeneous nuclear r 69.6 3.7 0.00013 36.9 4.0 52 391-446 46-103 (139)
227 1ufw_A Synaptojanin 2; RNP dom 66.2 8 0.00027 33.0 5.1 41 406-451 39-79 (95)
228 2d9o_A DNAJ (HSP40) homolog, s 63.6 10 0.00036 31.9 5.4 45 401-448 27-73 (100)
229 1vd2_A Protein kinase C, IOTA 62.8 15 0.0005 30.9 6.0 58 394-451 17-76 (89)
230 2dit_A HIV TAT specific factor 60.1 38 0.0013 28.3 8.4 44 405-451 40-86 (112)
231 3tht_A Alkylated DNA repair pr 57.4 12 0.0004 38.9 5.5 58 393-454 20-81 (345)
232 3tr8_A Oligoribonuclease; tran 53.7 7 0.00024 36.9 2.8 37 180-216 79-123 (186)
233 2dnr_A Synaptojanin-1; RRM dom 52.8 19 0.00064 30.4 5.0 38 406-447 30-67 (91)
234 1whr_A Hypothetical KIAA1002 p 48.9 22 0.00075 31.6 5.1 63 61-156 28-90 (124)
235 2kfn_A Klenow fragment of DNA 48.9 27 0.00091 38.7 7.0 107 189-329 82-194 (605)
236 2dhx_A Poly (ADP-ribose) polym 47.3 73 0.0025 27.5 8.0 57 391-448 8-66 (104)
237 3saf_A Exosome component 10; e 44.5 64 0.0022 34.3 8.9 100 189-329 174-278 (428)
238 1yt3_A Ribonuclease D, RNAse D 43.5 54 0.0018 33.8 7.9 102 188-329 65-171 (375)
239 2j8a_A Histone-lysine N-methyl 40.7 59 0.002 29.4 6.6 42 394-438 5-57 (136)
240 1jmt_A Splicing factor U2AF 35 39.9 52 0.0018 27.4 5.9 44 406-451 41-90 (104)
241 2hbj_A Exosome complex exonucl 39.3 64 0.0022 33.9 7.8 100 189-329 151-255 (410)
242 3v4m_A Splicing factor U2AF 65 37.7 44 0.0015 28.0 5.1 44 405-451 29-81 (105)
243 2pe8_A Splicing factor 45; RRM 35.4 64 0.0022 27.0 5.8 45 404-451 26-78 (105)
244 3gku_A Probable RNA-binding pr 29.0 55 0.0019 31.9 4.8 44 111-157 167-210 (225)
245 1vk0_A Hypothetical protein; h 28.9 51 0.0017 31.4 4.5 103 188-326 99-205 (206)
246 3ue2_A Poly(U)-binding-splicin 28.8 77 0.0026 27.3 5.3 44 405-451 39-93 (118)
247 3s6e_A RNA-binding protein 39; 27.9 78 0.0027 27.1 5.1 44 405-451 31-77 (114)
248 1msz_A DNA-binding protein smu 27.2 1.2E+02 0.0042 25.1 6.0 39 115-157 40-78 (86)
249 2e6m_A Werner syndrome ATP-dep 26.7 2.4E+02 0.0084 25.8 8.9 101 190-328 89-195 (208)
No 1
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.6e-73 Score=626.23 Aligned_cols=379 Identities=23% Similarity=0.361 Sum_probs=227.1
Q ss_pred CchhhhcCCCchhhhhhCCCCCCHHHHHHHHHHhhhhccccccccccccccccccCCCCCccHHHHHHHHHHHHHHhhhh
Q 008236 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGL 80 (573)
Q Consensus 1 i~FLa~~gFDFNk~~~~GIpYLsr~eEe~~~~rl~~~~~~~~~~~~~~~~~~~d~~l~~~~D~~F~e~v~~~I~eWl~~~ 80 (573)
|+||++||||||+|+++|||||+++||+++++++.+++.....+ ..+..+....+.+|.+|+++++++|++|++..
T Consensus 115 i~fL~~~GfDFnk~~~~GI~yl~~~ee~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~I~~wl~~~ 190 (507)
T 3d45_A 115 IDFLASQGFDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGA----GALAKCPVTIPEDQKKFIDQVIEKIEDFLQSE 190 (507)
T ss_dssp HHHHHTTTCCHHHHHTTCBCBCCHHHHHHHHHHSCC--------------------------------------------
T ss_pred HHHHHHcCCChhhHHhcCCCCCChHHHHHHHHHHHhhhhhhhcc----ccccCCcccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999999999988765532211 00111111234577889999999999999742
Q ss_pred ccCCCCCCCcCCCCCcchhhhHHHhhccccccccCCCCHHHHHHHHHHHHHhCCCeEEEEeccCCCCceeEEEEecchhh
Q 008236 81 LRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESD 160 (573)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~q~~~~~~~p~l~L~~~~s~QrrLI~q~lr~~fp~lv~v~~~~~~~~~~~ivv~~~~~ee 160 (573)
.. +.+.|++||+|||+||||+|+++||+++++++....+..+.++|.+..+++
T Consensus 191 ----~~-----------------------~~l~i~~~n~~~r~Lv~q~l~~~fp~~v~~~~~~~~~~~~~i~v~~~~~e~ 243 (507)
T 3d45_A 191 ----EK-----------------------RSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVISKVDEEE 243 (507)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----CC-----------------------CccccCCCcHHHHHHHHHHHHHhCCCceEeeeccCCCcceeEEEEeCCHHH
Confidence 11 136788999999999999999999999988764323323334455555554
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHhcCCCeEEechhhhHHHHHHHHhcCCCCCCHHHHHHHHHccCCCCcc
Q 008236 161 KKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID 240 (573)
Q Consensus 161 r~~l~~e~~e~~~~~~e~~l~~~~Gf~~v~~~l~~s~kpiVgHN~~~Dl~~l~~~F~~~LP~~~~eFk~~l~~~FP~I~D 240 (573)
+.. .++++.+++++++.+++|||+|+++|++++||||||||++|+||||++|+||||++++||++.+|.+||.|||
T Consensus 244 ~~~----~~~~~~~~~~~~~~~~~Gfr~v~~~L~~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~D 319 (507)
T 3d45_A 244 RKR----REQEKYTKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLD 319 (507)
T ss_dssp ------------CCSTHHHHHHHSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEE
T ss_pred HHH----HHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeE
Confidence 432 2333344556788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhchHHHHhhccCCCChHHHHHhhhhhhccCCccccccCCCCceeeeeeccc-cccCCCCCcccchhhhHHHHHH
Q 008236 241 TKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDI-RSSNWNSGVKHEAGYDAFMTGC 319 (573)
Q Consensus 241 TK~La~~~~~lk~~~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~-~s~~~~~~~~HEAGyDAymTG~ 319 (573)
||||++..+ ++... .+++|+++++.|...- +..|.|. .+.. .+|....++.|||||||||||+
T Consensus 320 TK~la~~~~-~~~~~--~~~~L~~l~~~l~~~~---------~~~p~i~----~~~~~~~y~~~~~~~HeAGyDA~mTg~ 383 (507)
T 3d45_A 320 TKLMASTQP-FKDII--NNTSLAELEKRLKETP---------FDPPKVE----SAEGFPSYDTASEQLHEAGYDAYITGL 383 (507)
T ss_dssp HHHHTTSTT-HHHHC--CCCCHHHHHHHTTSTT---------CCCCCEE----ECTTSCCCC----CCCCHHHHHHHHHH
T ss_pred hHhhhhcCc-ccccc--CCCCHHHHHHHHhccC---------CCCCeEE----ecccccccccCCCCcccHHHHHHHHHH
Confidence 999998653 44443 3799999998764311 2334432 3332 3344567899999999999999
Q ss_pred HHHHHHHHhCCCcccCCchhhhhhhhhhccccccccccCC-CCcccccCCCCCCCccccccccccCCCcccccceEEEeC
Q 008236 320 VFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT-NGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWG 398 (573)
Q Consensus 320 vF~kL~~~lg~~~~~~~~~~~l~~~~~l~~~~N~L~~~~~-~~~~idL~~~~~~~~~~~~~~l~~~~p~~~~~~~v~~~~ 398 (573)
||++||++|+. +...+....++.+..+++|.|+|+++++ +.++|||+|.++.+++ ++||+|+
T Consensus 384 ~F~kl~~~l~~-~~~~~~~~~~~~~~~l~~~~N~l~l~~~~d~~~i~l~g~d~~~~R----------------~~vl~v~ 446 (507)
T 3d45_A 384 CFISMANYLGS-LLSPPKMCVSARSKLIEPFFNKLFLMRVMDIPYLNLEGPDLQPKR----------------DHVLHVT 446 (507)
T ss_dssp HHHHHHHHHCC----------CCSCSSSGGGTTEECCCSBSSCCSEESSSCCCCCCG----------------GGEEEEE
T ss_pred HHHHHHHHHhh-ccCCcccccccchhHHHhhheeeeeeccCCCceeeCCCCCCCCCc----------------CcEEEEe
Confidence 99999999985 2222222234456689999999999985 4678999987655543 3499999
Q ss_pred CCCcccHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 008236 399 FPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 399 fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
||++|+++||.+||+ +||. ++|+|||||||||+|+++++|+++|+.++.
T Consensus 447 f~~~~~~~~i~~~fs-~fg~---v~V~widdt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 447 FPKEWKTSDLYQLFS-AFGN---IQISWIDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp CCTTCCHHHHHHHGG-GGCC---CEEEECSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHH-hcCC---EEEEEEcCCeEEEEECCHHHHHHHHHHHHh
Confidence 999999999999995 8995 477999999999999999999999998865
No 2
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=100.00 E-value=3.1e-60 Score=511.43 Aligned_cols=311 Identities=23% Similarity=0.366 Sum_probs=158.8
Q ss_pred CchhhhcCCCchhhhhhCCCCCCHHHHHHHHHHhhhhccccccccccc--cccccccCC-CCCccHHHHHHHHHHHHHHh
Q 008236 1 MDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDESLDSWHS--LKEIRDTHL-FNIPDILFAERMKDRLSEWL 77 (573)
Q Consensus 1 i~FLa~~gFDFNk~~~~GIpYLsr~eEe~~~~rl~~~~~~~~~~~~~~--~~~~~d~~l-~~~~D~~F~e~v~~~I~eWl 77 (573)
|+||++||||||+|+++|||||+++||+++++++.++........... .......++ ...++..|+++++++|++|+
T Consensus 113 i~fL~~~GfDFnk~~~~GI~y~~~~ee~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~l 192 (430)
T 2a1r_A 113 IDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLL 192 (430)
T ss_dssp HHHHHHTTCCHHHHHTTCBCBCCHHHHHHTC-------------------------------------------------
T ss_pred HHHHHHcCCChhhHhhcCcCccCHHHHHHHHHHHHhhhhhhcccccccccCccccccccCCcHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999988876654211100000 000011111 23456789999999999999
Q ss_pred hhhccCCCCCCCcCCCCCcchhhhHHHhhccccccccCCCCHHHHHHHHHHHHHhCCCeEEEEeccCCCCceeEEEEecc
Q 008236 78 GGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIES 157 (573)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~q~~~~~~~p~l~L~~~~s~QrrLI~q~lr~~fp~lv~v~~~~~~~~~~~ivv~~~~ 157 (573)
+.. + .+++.|++||+|||+||||+|+++||+++++.+....+..+.++|.+..
T Consensus 193 ~~~----~-----------------------~~~l~l~~~~~~qr~Lv~q~l~~~fp~~~~~~~~~~~~~~~~v~v~k~~ 245 (430)
T 2a1r_A 193 QSE----E-----------------------NKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVD 245 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCC----C-----------------------CCccccCCCcHHHHHHHHHHHHHhCCCceeeeeeeecCCceEEEEEeCC
Confidence 631 1 1247789999999999999999999999876542211212223333333
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHhcCCCeEEechhhhHHHHHHHHhcCCCCCCHHHHHHHHHccCCC
Q 008236 158 ESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH 237 (573)
Q Consensus 158 ~eer~~l~~e~~e~~~~~~e~~l~~~~Gf~~v~~~l~~s~kpiVgHN~~~Dl~~l~~~F~~~LP~~~~eFk~~l~~~FP~ 237 (573)
++++.. .++++.+++++++.+++|||+|+++|++++|||||||||+|+||+|++|+||||++++|||+.+|.+||.
T Consensus 246 ~e~~~~----~e~~~~~~~~~~l~~~~Gfr~V~~~L~~s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~ 321 (430)
T 2a1r_A 246 EEERKR----REQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPR 321 (430)
T ss_dssp ---------------CTTHHHHHHTTSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSS
T ss_pred HHHHHH----HHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCc
Confidence 333221 1122223345678899999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHhhhchHHHHhhccCCCChHHHHHhhhhhhccCCccccccCCCCceeeeeeccc-cccCCCCCcccchhhhHHH
Q 008236 238 IIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDI-RSSNWNSGVKHEAGYDAFM 316 (573)
Q Consensus 238 I~DTK~La~~~~~lk~~~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~-~s~~~~~~~~HEAGyDAym 316 (573)
|||||||++.++ ++... .+++|+++++.|.... +..|.+ +.+.. .++....++.|||||||||
T Consensus 322 i~DTK~la~~~~-~~~~~--~~~sL~~l~~~l~~~~---------~~~p~i----~~~~~~~~y~~~~~~~HeAGyDa~m 385 (430)
T 2a1r_A 322 LLDTKLMASTQP-FKDII--NNTSLAELEKRLKETP---------FNPPKV----ESAEGFPSYDTASEQLHEAGYDAYI 385 (430)
T ss_dssp EEEHHHHHTSTT-TTTTC--SCCSHHHHHHHTTSTT---------CCCCCE----EECTTCCCC-----CCCCHHHHHHH
T ss_pred eeehHHhhhccc-hhhcc--CCCCHHHHHHHHHhCC---------CCCCee----ecCCCccccccCCCCccchHHHHHH
Confidence 999999997764 44432 4799999998864321 223333 23332 2333457899999999999
Q ss_pred HHHHHHHHHHHhCCCcccCCchhhhhhhhhhccccccccccCC
Q 008236 317 TGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWT 359 (573)
Q Consensus 317 TG~vF~kL~~~lg~~~~~~~~~~~l~~~~~l~~~~N~L~~~~~ 359 (573)
||+||++||++||... ..++....+..+.+++|+|+|+++++
T Consensus 386 TG~vFi~l~~~l~~~~-~~~~~~~~~~~~~~~~~~n~~~~~r~ 427 (430)
T 2a1r_A 386 TGLCFISMANYLGSFL-SPPKIHVSARSKLIEPFFNKLFLMRV 427 (430)
T ss_dssp HHHHHHHHHHHHGGGS-SSCCSCCCSSCTTSGGGSSCCC----
T ss_pred HHHHHHHHHHHHhhcc-CCCcccccchhHHHHHhhhhhheeee
Confidence 9999999999998732 22222233456789999999999875
No 3
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=99.84 E-value=4.2e-21 Score=196.27 Aligned_cols=129 Identities=22% Similarity=0.292 Sum_probs=104.1
Q ss_pred hhhhccHHHHHHHHhcCCCe------EEechhhhHHHHHHHHh-cCCCCCCHHHHHHHHHccCCCCcchhHHhhhchHHH
Q 008236 180 IKASIGFRHVIDLLSSEKKL------IVGHNCFLDIAHIYSKF-FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 252 (573)
Q Consensus 180 l~~~~Gf~~v~~~l~~s~kp------iVgHN~~~Dl~~l~~~F-~~~LP~~~~eFk~~l~~~FP~I~DTK~La~~~~~lk 252 (573)
..+-|.+..+.+.|+.|+.+ ||+||++||++||++.| .++||+++.+|+..++.+||.|||||||+..+..+
T Consensus 127 ~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l- 205 (285)
T 4gmj_B 127 EEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNL- 205 (285)
T ss_dssp HHHCBCHHHHHHHHHTSSSSSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTC-
T ss_pred HHcCCCHHHHHHHHHHhHHHhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhcccc-
Confidence 33467788999999988774 89999999999999999 58899999999999999999999999999887544
Q ss_pred HhhccCCCChHHHHHhhhhhhccCCccccccCCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHhCCCc
Q 008236 253 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDF 332 (573)
Q Consensus 253 ~~~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~~~HEAGyDAymTG~vF~kL~~~lg~~~ 332 (573)
.++|+.+- +.| .+. +.|+.|||||||||||.||++|+..++.+
T Consensus 206 ------~ggL~~lA----~~L-------------------~v~-------r~g~~HqAGsDSllT~~~F~kl~~~~f~~- 248 (285)
T 4gmj_B 206 ------KGGLQEVA----EQL-------------------ELE-------RIGPQHQAGSDSLLTGMAFFKMREMFFED- 248 (285)
T ss_dssp ------CSCHHHHH----HHT-------------------TCC-------CCSCTTSHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred ------CChHHHHH----HhC-------------------CCC-------CCCCCCcchhHHHHHHHHHHHHHHHHhcC-
Confidence 45677763 333 111 45789999999999999999999988532
Q ss_pred ccCCchhhhhhhhhhcccccccccc
Q 008236 333 KQQSSSENLAHNEKLREHVNLLYLS 357 (573)
Q Consensus 333 ~~~~~~~~l~~~~~l~~~~N~L~~~ 357 (573)
. -...+|.|.||+-
T Consensus 249 --~---------~~~~~~~g~l~Gl 262 (285)
T 4gmj_B 249 --H---------IDDAKYCGHLYGL 262 (285)
T ss_dssp --C---------CCHHHHTTCCTTS
T ss_pred --C---------cchHHhCCEEecc
Confidence 1 1234699999984
No 4
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=99.82 E-value=2.7e-20 Score=187.25 Aligned_cols=113 Identities=22% Similarity=0.309 Sum_probs=96.0
Q ss_pred hhhhccHHHHHHHHhcCCCe------EEechhhhHHHHHHHHh-cCCCCCCHHHHHHHHHccCCCCcchhHHhhhchHHH
Q 008236 180 IKASIGFRHVIDLLSSEKKL------IVGHNCFLDIAHIYSKF-FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 252 (573)
Q Consensus 180 l~~~~Gf~~v~~~l~~s~kp------iVgHN~~~Dl~~l~~~F-~~~LP~~~~eFk~~l~~~FP~I~DTK~La~~~~~lk 252 (573)
..+-|.+..+.++|+.|+.+ ||.||+.+|++||++.+ ..+||+++.+|++.++.+||.|||||||+..+..+
T Consensus 117 ~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l- 195 (252)
T 2d5r_A 117 EEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNL- 195 (252)
T ss_dssp HHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTTC-
T ss_pred HhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhccc-
Confidence 34567888999999998764 89999999999999999 58999999999999999999999999999887543
Q ss_pred HhhccCCCChHHHHHhhhhhhccCCccccccCCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHhC
Q 008236 253 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 329 (573)
Q Consensus 253 ~~~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~~~HEAGyDAymTG~vF~kL~~~lg 329 (573)
.++|+.+.+.|. +. +.|+.|+||+||++||.||++|+..+.
T Consensus 196 ------~~gL~~la~~L~-----------------------v~-------r~g~~HqAGsDsllT~~~F~km~~~~f 236 (252)
T 2d5r_A 196 ------KGGLQEVAEQLE-----------------------LE-------RIGPQHQAGSDSLLTGMAFFKMREMFF 236 (252)
T ss_dssp ------CSSHHHHHHHHT-----------------------CC-------CCSSTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred ------CCCHHHHHHHcC-----------------------CC-------ccCcccchhhhHHHHHHHHHHHHHHhc
Confidence 456887754421 11 458899999999999999999998874
No 5
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=99.82 E-value=2.6e-20 Score=192.85 Aligned_cols=128 Identities=25% Similarity=0.258 Sum_probs=104.8
Q ss_pred hhhhccHHHHHHHHhcCCC------eEEechhhhHHHHHHHHh-cCCCCCCHHHHHHHHHccCCCCcchhHHhhhchHHH
Q 008236 180 IKASIGFRHVIDLLSSEKK------LIVGHNCFLDIAHIYSKF-FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 252 (573)
Q Consensus 180 l~~~~Gf~~v~~~l~~s~k------piVgHN~~~Dl~~l~~~F-~~~LP~~~~eFk~~l~~~FP~I~DTK~La~~~~~lk 252 (573)
..+-|.+..|.++|+.|+. .||.||+.||++||++.+ +.+||+++++|++.++.+||.|||||||+..+..+
T Consensus 138 ~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~iYD~K~l~~~~~~l- 216 (333)
T 2p51_A 138 QEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNN- 216 (333)
T ss_dssp HHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSSEEEHHHHHTTTTCC-
T ss_pred HHcCCCHHHHHHHHHhcCcccCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhccc-
Confidence 3456788889999999886 489999999999999999 58999999999999999999999999999886533
Q ss_pred HhhccCCCChHHHHHhhhhhhccCCccccccCCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHhCCCc
Q 008236 253 QRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDF 332 (573)
Q Consensus 253 ~~~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~~~HEAGyDAymTG~vF~kL~~~lg~~~ 332 (573)
.++|+.+.+.| .+. +.|..|+||+||||||.||++|+..+..+
T Consensus 217 ------~ggL~~lA~~L-----------------------~v~-------Rig~~HqAGsDSlLT~~~F~kl~~~~f~~- 259 (333)
T 2p51_A 217 ------SKGLQDIADDL-----------------------QIH-------RIGPQHQAGSDALLTARIFFEIRSRYFDG- 259 (333)
T ss_dssp ------CCCHHHHHHHT-----------------------TCC-------CCSCTTSHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred ------cCCHHHHHHHc-----------------------CCC-------ccCcchhhhhHHHHHHHHHHHHHHHhcCC-
Confidence 46788775432 111 45899999999999999999999977422
Q ss_pred ccCCchhhhhhhhhhcccccccccc
Q 008236 333 KQQSSSENLAHNEKLREHVNLLYLS 357 (573)
Q Consensus 333 ~~~~~~~~l~~~~~l~~~~N~L~~~ 357 (573)
. ...+|.|+||+.
T Consensus 260 --~----------~~~~~~g~l~Gl 272 (333)
T 2p51_A 260 --S----------IDSRMLNQLYGL 272 (333)
T ss_dssp --S----------CCGGGTTCCTTC
T ss_pred --C----------chhhhCCEEecc
Confidence 1 234688888875
No 6
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=99.79 E-value=5.1e-19 Score=180.86 Aligned_cols=139 Identities=13% Similarity=0.161 Sum_probs=104.2
Q ss_pred hhhhccHHHHHHHHhcCCC------eEEechhhhHHHHHHHHh-cCCCCCCHHHHHHHHHccCCCCcchhHHhhhchHHH
Q 008236 180 IKASIGFRHVIDLLSSEKK------LIVGHNCFLDIAHIYSKF-FGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ 252 (573)
Q Consensus 180 l~~~~Gf~~v~~~l~~s~k------piVgHN~~~Dl~~l~~~F-~~~LP~~~~eFk~~l~~~FP~I~DTK~La~~~~~lk 252 (573)
..+-|.+..+.++|+.|+. .||.||+.||++||++.+ +.+||+++.+|+..++.+||.|||||||+..+..++
T Consensus 132 ~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~ 211 (289)
T 1uoc_A 132 ENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFK 211 (289)
T ss_dssp HHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCSSEEEHHHHHHHHTTTC
T ss_pred HHcCCCHHHHHHHHHhcCCccCCCceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhCccceeHHHHHHHHHhcc
Confidence 3456788899999999876 499999999999999999 589999999999999999999999999998765442
Q ss_pred Hh--------hccCCCChHHHHHhhhhhhccCCccccccCCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHH
Q 008236 253 QR--------MKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQA 324 (573)
Q Consensus 253 ~~--------~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~~~HEAGyDAymTG~vF~kL 324 (573)
+. ......+|+.+.+. + .+. +.|..|+||+||++||.+|++|
T Consensus 212 ~~~~~~~~~~~~~~~~~L~~lA~~----L-------------------~v~-------r~g~~HqAGsDSllT~~~F~kl 261 (289)
T 1uoc_A 212 NPQLQQSSQQQQQQQYSLTTLADE----L-------------------GLP-------RFSIFTTTGGQSLLMLLSFCQL 261 (289)
T ss_dssp C-------------CCSHHHHHHH----T-------------------TCC-------CCGGGGSHHHHHHHHHHHHHHH
T ss_pred CcccccccccccccCCCHHHHHHH----c-------------------CCC-------ccCcccccHHHHHHHHHHHHHH
Confidence 10 00113456666433 2 111 5678999999999999999999
Q ss_pred HHHhCCCcccCCchhhhhhhhhhcccccccccc
Q 008236 325 CSHLGIDFKQQSSSENLAHNEKLREHVNLLYLS 357 (573)
Q Consensus 325 ~~~lg~~~~~~~~~~~l~~~~~l~~~~N~L~~~ 357 (573)
+..+...+... ....+|.|+||+.
T Consensus 262 ~~~~~~~~~~~---------~~~~~~~g~l~Gl 285 (289)
T 1uoc_A 262 SKLSMHKFPNG---------TDFAKYQGVIYGI 285 (289)
T ss_dssp HHHTTTBCTTS---------CBGGGGTTCSSCC
T ss_pred HHHHhhhhcCC---------CChHHhCCEEeCc
Confidence 98773211110 1245799999873
No 7
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=99.48 E-value=5.4e-14 Score=121.24 Aligned_cols=68 Identities=21% Similarity=0.276 Sum_probs=58.1
Q ss_pred ccccCCCCCCCccccccccccCCCcccccceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhH
Q 008236 363 IINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMV 442 (573)
Q Consensus 363 ~idL~~~~~~~~~~~~~~l~~~~p~~~~~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~ 442 (573)
..||.|+++.|.+ +|||+++||++||+.||.++|+ +||.+ +|+|||||+|||+|++++.|
T Consensus 3 ~~~l~g~d~~p~r----------------~HVf~l~FP~ewKt~DI~~lFs-~fggv---~I~WidDTsAlvvf~~~~~a 62 (100)
T 1whv_A 3 SGSSGGPDLQPKR----------------DHVLHVTFPKEWKTSDLYQLFS-AFGNI---QISWIDDTSAFVSLSQPEQV 62 (100)
T ss_dssp CSCCCCSCCCCCC----------------CSEEEEECCTTCCHHHHHHHHT-TTCSC---CCEEEETTEEEEECSCHHHH
T ss_pred ccccCCCCCCCCC----------------CeEEEEeCChhhhhHHHHHHhh-ccCCE---EEEEEcCCeEEEEecCHHHH
Confidence 4688888877765 3588889999999999999996 89954 66999999999999999999
Q ss_pred HHHHHHhc
Q 008236 443 SKFLDLKG 450 (573)
Q Consensus 443 ~~~L~~~~ 450 (573)
+..|..+.
T Consensus 63 ~~al~~i~ 70 (100)
T 1whv_A 63 QIAVNTSK 70 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99887553
No 8
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=99.34 E-value=7.1e-13 Score=114.63 Aligned_cols=57 Identities=26% Similarity=0.374 Sum_probs=50.0
Q ss_pred ccceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhc
Q 008236 390 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKG 450 (573)
Q Consensus 390 ~~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~ 450 (573)
.++|||+++||++||+.||.++|+ +||+ ++|+|||||+|||+|++++.|...|..+.
T Consensus 4 ~R~HV~~l~FP~ewKt~Di~~lFs-~fgg---v~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 4 GSDHVLHVTFPKEWKTSDLYQLFS-AFGN---IQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEEEECCTTCCHHHHHHHTT-TSEE---EEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred CCCeEEEEeCChhhhhHHHHHHHh-ccCC---EEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 356789999999999999999986 8883 58899999999999999999998877543
No 9
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=99.05 E-value=3.1e-10 Score=95.97 Aligned_cols=73 Identities=11% Similarity=0.213 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHHHHHHhhhhccCCCCCCCcCCCCCcchhhhHHHhhccccccccCCCCHHHHHHHHHHHHHhCCCeEEEE
Q 008236 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLR 140 (573)
Q Consensus 61 ~D~~F~e~v~~~I~eWl~~~l~~~~~~~~~~~~~~~~~~~~q~~~~~~~p~l~L~~~~s~QrrLI~q~lr~~fp~lv~v~ 140 (573)
.++.|++.++++|.+||+.. +. ..|+|++||+||||||||+|+++||+.++++
T Consensus 8 e~k~~id~i~~kIe~FL~s~----~~-----------------------~~l~l~pCN~f~RkLIYQ~~~~kfp~~i~ve 60 (87)
T 1ug8_A 8 DQKKFIDQVIEKIEDFLQSE----EK-----------------------RSLELDPCTGFQRKLIYQTLSWKYPKGIHVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHCS----SC-----------------------CEEECCCCCSHHHHHHHHHHHHHSSSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCC----CC-----------------------CceecCCchHHHHHHHHHHHHHhcCCceEEE
Confidence 34679999999999999832 11 2478999999999999999999999999999
Q ss_pred eccCCCCceeEEEEecchhh
Q 008236 141 VSGENSCSQNVIVYIESESD 160 (573)
Q Consensus 141 ~~~~~~~~~~ivv~~~~~ee 160 (573)
+....+..+.+++.+.+.++
T Consensus 61 t~~~e~~~~~ivv~~~~~Ee 80 (87)
T 1ug8_A 61 TLETDKKERHIVISKVDEEE 80 (87)
T ss_dssp EECCSSSCSEEEEEECCTTT
T ss_pred EEecCCceEEEEEEecCHHH
Confidence 86444433334554555543
No 10
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=96.37 E-value=0.016 Score=54.60 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=62.7
Q ss_pred hhhhccHHHHHHHHhc--CCCeEEechhhhHHHHHHHHh--cC-CCCCCHHHHHHHHHccCCCCcchhHHhhhchHHHHh
Q 008236 180 IKASIGFRHVIDLLSS--EKKLIVGHNCFLDIAHIYSKF--FG-PLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQR 254 (573)
Q Consensus 180 l~~~~Gf~~v~~~l~~--s~kpiVgHN~~~Dl~~l~~~F--~~-~LP~~~~eFk~~l~~~FP~I~DTK~La~~~~~lk~~ 254 (573)
+.++.-|..+++.+.. .+.++||||.-+|+.+|-+.| +| ++|. +. .+..++||-.++...
T Consensus 76 l~~~~~~~~v~~~~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~-~~--------~~~~~iDt~~l~~~~------ 140 (194)
T 2gui_A 76 LLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPK-TN--------TFCKVTDSLAVARKM------ 140 (194)
T ss_dssp HTTSCCHHHHHHHHHHHHTTSEEEETTHHHHHHHHHHHHHHTCSCCCC-GG--------GTSEEEEHHHHHHHH------
T ss_pred HhCCCCHHHHHHHHHHHHCCCeEEEEchHHhHHHHHHHHHHcCCCCcc-cc--------ccCceeeHHHHHHHH------
Confidence 3445556666555432 467999999999999988776 22 2231 11 013578987665421
Q ss_pred hccCCCChHHHHHhhhhhhccCCccccccCCCCceeeeeeccccccCCCCC-cccchhhhHHHHHHHHHHHHH
Q 008236 255 MKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSG-VKHEAGYDAFMTGCVFAQACS 326 (573)
Q Consensus 255 ~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~-~~HEAGyDAymTG~vF~kL~~ 326 (573)
......+|..+.+. + .++ ..+ ..|.|-.||.+|+.+|.+|..
T Consensus 141 ~p~~~~~L~~l~~~----~-------------------gi~-------~~~~~~H~Al~Da~~ta~l~~~l~~ 183 (194)
T 2gui_A 141 FPGKRNSLDALCAR----Y-------------------EID-------NSKRTLHGALLDAQILAEVYLAMTG 183 (194)
T ss_dssp STTSCCSHHHHHHH----T-------------------TCC-------CTTCSSCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCHHHHHHH----c-------------------CcC-------CCCCCCCChHHHHHHHHHHHHHHHh
Confidence 11223467765332 2 011 113 589999999999999999854
No 11
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=95.76 E-value=0.034 Score=56.54 Aligned_cols=104 Identities=12% Similarity=0.105 Sum_probs=64.9
Q ss_pred hhhhccHHHHHHHH----hcC-----CCeEEechhhhHHH-HHHHHh--cC-CCCCCHHHHHHHHHccCCCCcchhHHhh
Q 008236 180 IKASIGFRHVIDLL----SSE-----KKLIVGHNCFLDIA-HIYSKF--FG-PLPLTAEEFISSVNKYFPHIIDTKILLN 246 (573)
Q Consensus 180 l~~~~Gf~~v~~~l----~~s-----~kpiVgHN~~~Dl~-~l~~~F--~~-~LP~~~~eFk~~l~~~FP~I~DTK~La~ 246 (573)
+..+.-|..|++.+ ... ++++|+||+-+|+. +|-..| +| ++|. ++..++||+.+..
T Consensus 147 v~~ap~~~evl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~-----------~~~~~iDt~~l~~ 215 (299)
T 1zbh_A 147 VDRADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP-----------FAKKWINIRKSYG 215 (299)
T ss_dssp HHTSBCHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG-----------GGSEEEEHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCc-----------ccchHHHHHHHHH
Confidence 44456666665543 333 26999999999999 887766 22 3342 1235789987753
Q ss_pred hchHHHHhhccCCCChHHHHHhhhhhhccCCccccccCCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHH
Q 008236 247 SNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACS 326 (573)
Q Consensus 247 ~~~~lk~~~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~~~HEAGyDAymTG~vF~kL~~ 326 (573)
. +.+ ......+|..+.+. + .++ ..+..|.|-.||..|+.+|.+|..
T Consensus 216 ~---~~~-~~~~~~~L~~l~~~----~-------------------gi~-------~~g~~H~Al~DA~ata~l~~~l~~ 261 (299)
T 1zbh_A 216 N---FYK-VPRSQTKLTIMLEK----L-------------------GMD-------YDGRPNCGLDDSKNIARIAVRMLQ 261 (299)
T ss_dssp H---HHT-CCGGGCSHHHHHHH----T-------------------TCC-------CCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred H---HhC-CCCCCccHHHHHHH----c-------------------CCC-------CCCCCCChHHHHHHHHHHHHHHHH
Confidence 2 111 11113567766432 1 111 124689999999999999999987
Q ss_pred Hh
Q 008236 327 HL 328 (573)
Q Consensus 327 ~l 328 (573)
..
T Consensus 262 ~~ 263 (299)
T 1zbh_A 262 DG 263 (299)
T ss_dssp TT
T ss_pred hC
Confidence 65
No 12
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=95.72 E-value=0.041 Score=51.71 Aligned_cols=98 Identities=24% Similarity=0.155 Sum_probs=62.9
Q ss_pred hhhhccHHHHHHHHhc--CCCeEEechhhhHHHHHHHHh--cC-CCCCCHHHHHHHHHccCCCCcchhHHhhhchHHHHh
Q 008236 180 IKASIGFRHVIDLLSS--EKKLIVGHNCFLDIAHIYSKF--FG-PLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQR 254 (573)
Q Consensus 180 l~~~~Gf~~v~~~l~~--s~kpiVgHN~~~Dl~~l~~~F--~~-~LP~~~~eFk~~l~~~FP~I~DTK~La~~~~~lk~~ 254 (573)
+.++.-|..+++.+.+ .+.++||||.-+|+-+|-+.| +| +.| -+.++||-.++.. +.
T Consensus 73 l~~~~~~~~v~~~~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~~-------------~~~~iDt~~l~~~---~~-- 134 (186)
T 2p1j_A 73 LENKRSIEEVLPEFLGFLEDSIIVAHNANFDYRFLRLWIKKVMGLDW-------------ERPYIDTLALAKS---LL-- 134 (186)
T ss_dssp HTTCCBHHHHHHHHHHHSSSCEEEETTHHHHHHHHHHHHHHHHCCCC-------------CCCEEEHHHHHHH---HT--
T ss_pred HhcCCCHHHHHHHHHHHHCCCEEEEECcHHHHHHHHHHHHHcCCCCC-------------CCCEEeHHHHHHH---Hh--
Confidence 4445566666665532 467999999999999987665 22 121 1247899777643 11
Q ss_pred hccCCCChHHHHHhhhhhhccCCccccccCCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHH
Q 008236 255 MKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 327 (573)
Q Consensus 255 ~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~~~HEAGyDAymTG~vF~kL~~~ 327 (573)
..+..+|..+.+. + .++ ....|.|..||+.|+.+|.+|...
T Consensus 135 -~~~~~~L~~l~~~----~-------------------gi~--------~~~~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 135 -KLRSYSLDSVVEK----L-------------------GLG--------PFRHHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp -CCSCCSHHHHHHH----T-------------------TCC--------STTCCHHHHHHHHHHHHHHHHTTC
T ss_pred -hcCCCCHHHHHHH----c-------------------CCC--------CCCCcCHHHHHHHHHHHHHHHHHH
Confidence 2345677766432 1 011 123699999999999999998654
No 13
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.67 E-value=0.055 Score=45.31 Aligned_cols=62 Identities=18% Similarity=0.039 Sum_probs=49.3
Q ss_pred ccceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEec------CceEEEEecchhhHHHHHHHhcccc
Q 008236 390 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD------ETAVFVQFSRAEMVSKFLDLKGSLD 453 (573)
Q Consensus 390 ~~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~id------dtsa~V~l~~~e~~~~~L~~~~~~~ 453 (573)
....+|+-+.|..++..+|+++|++.||.+ .+|..+- ...|||.|.+.++|+..|..++...
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v--~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 75 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSC--RGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAV 75 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTE--EEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCe--EEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCc
Confidence 345689999999999999999997449975 4555543 3579999999999999988776533
No 14
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=95.61 E-value=0.025 Score=55.11 Aligned_cols=86 Identities=26% Similarity=0.304 Sum_probs=56.4
Q ss_pred CCCeEEechhhhHHHHHHHHh-cCCCCCCHHHHHHHHHccCC--CCcchhHHhhhchHHHHhhccCCCChHHHHHhhhhh
Q 008236 196 EKKLIVGHNCFLDIAHIYSKF-FGPLPLTAEEFISSVNKYFP--HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQ 272 (573)
Q Consensus 196 s~kpiVgHN~~~Dl~~l~~~F-~~~LP~~~~eFk~~l~~~FP--~I~DTK~La~~~~~lk~~~~~~~tsL~~l~~~l~~~ 272 (573)
.+.++||||.-+|+.+|-..| .-.++. .-|+ .++||..++... . +..+|..+.+.
T Consensus 133 ~~~~lVahN~~fD~~~L~~~~~~~g~~~----------~p~~~~~~~Dt~~la~~~------~--p~~~L~~l~~~---- 190 (235)
T 3v9w_A 133 NRAIMVAHNANFDHSFMMAAAERASLKR----------NPFHPFATFDTAALAGLA------L--GQTVLSKACQT---- 190 (235)
T ss_dssp CEEEEEETTTHHHHHHHHHHHHHTTCCC----------CCEEEEEEEEHHHHHHHH------H--SCCSHHHHHHH----
T ss_pred CCcEEEEeChHHHHHHHHHHHHHcCCCC----------CCCCCCcEEEhHHHHHHH------h--CCCCHHHHHHH----
Confidence 467999999999999987665 111210 0021 467998887531 1 13467765332
Q ss_pred hccCCccccccCCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHh
Q 008236 273 IALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328 (573)
Q Consensus 273 l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~~~HEAGyDAymTG~vF~kL~~~l 328 (573)
+ .++. ..+..|.|..||.+|+.+|.+|...+
T Consensus 191 ~-------------------gi~~------~~~~~H~Al~DA~~ta~l~~~l~~~l 221 (235)
T 3v9w_A 191 A-------------------GMDF------DSTQAHSALYDTERTAVLFCEIVNRW 221 (235)
T ss_dssp H-------------------TCCC------CTTTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred c-------------------CCCC------CCCCCcChHHHHHHHHHHHHHHHHHH
Confidence 2 0110 12368999999999999999998877
No 15
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=95.47 E-value=0.032 Score=52.76 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=54.5
Q ss_pred CeEEechhhhHHH-HHHHHh--cC-CCCCCHHHHHHHHHccCCCCcchhHHhhhchHHHHhhccCCCChHHHHHhhhhhh
Q 008236 198 KLIVGHNCFLDIA-HIYSKF--FG-PLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQI 273 (573)
Q Consensus 198 kpiVgHN~~~Dl~-~l~~~F--~~-~LP~~~~eFk~~l~~~FP~I~DTK~La~~~~~lk~~~~~~~tsL~~l~~~l~~~l 273 (573)
.++|+||.-+|+. +|-+.| +| ++|. ++..++||+.++... + .. .....+|..+.+. +
T Consensus 106 ~~lv~hn~~fD~~~~L~~~~~~~~~~~p~-----------~~~~~~dt~~l~~~~--~-~~-~~~~~~L~~l~~~----~ 166 (204)
T 1w0h_A 106 KYSLLTDGSWDMSKFLNIQCQLSRLKYPP-----------FAKKWINIRKSYGNF--Y-KV-PRSQTKLTIMLEK----L 166 (204)
T ss_dssp CEEEEESSTTTTHHHHHHHHHHHTCCCCG-----------GGSEEEEHHHHHHHH--H-TC-CGGGCSHHHHHHH----T
T ss_pred cEEEEEECcchHHHHHHHHHHHhCCCCcc-----------cccceEEHHHHHHHH--h-CC-CCccchHHHHHHH----c
Confidence 4699999999996 777665 22 2332 123578998886531 1 10 0123567766432 1
Q ss_pred ccCCccccccCCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHh
Q 008236 274 ALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328 (573)
Q Consensus 274 ~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~~~HEAGyDAymTG~vF~kL~~~l 328 (573)
.++ ..+..|.|-.||..|+.+|.+|....
T Consensus 167 -------------------gi~-------~~~~~H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 167 -------------------GMD-------YDGRPHCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp -------------------TCC-------CCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------CCC-------CCCCccCcHHHHHHHHHHHHHHHHCC
Confidence 011 12468999999999999999997754
No 16
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=95.40 E-value=0.022 Score=53.87 Aligned_cols=101 Identities=19% Similarity=0.073 Sum_probs=57.3
Q ss_pred hccHHHHHHHHhc--CCCeEEechhhhHHHHHHHHhcCCCCCCHHHHHHHHHccCCCCcchhHHhhhchHHHHhhc-cCC
Q 008236 183 SIGFRHVIDLLSS--EKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMK-KSS 259 (573)
Q Consensus 183 ~~Gf~~v~~~l~~--s~kpiVgHN~~~Dl~~l~~~F~~~LP~~~~eFk~~l~~~FP~I~DTK~La~~~~~lk~~~~-~~~ 259 (573)
+.-|..+++.+.+ .+.++||||.-+|+-+|-.. +|. ..++||-.+...... ..+. ...
T Consensus 67 a~~~~~v~~~~~~~l~~~~lV~hn~~fD~~~L~~~----~~~-------------~~~idt~~~~~~~~~--~~~p~~~~ 127 (189)
T 1wlj_A 67 ATPFAVARLEILQLLKGKLVVGHDLKHDFQALKED----MSG-------------YTIYDTSTDRLLWRE--AKLDHCRR 127 (189)
T ss_dssp CEEHHHHHHHHHHHHTTSEEEESSHHHHHHHTTCC----CTT-------------CEEEEGGGCHHHHHH--HTC-----
T ss_pred CCCHHHHHHHHHHHHCCCEEEECCcHHHHHHHHHh----CCC-------------CceechHhhhhhhhc--ccCCCCCC
Confidence 3444444443321 47899999999999776422 231 137899765321110 0111 135
Q ss_pred CChHHHHHhhhhhhccCCccccccCCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHhC
Q 008236 260 TSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 329 (573)
Q Consensus 260 tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~~~HEAGyDAymTG~vF~kL~~~lg 329 (573)
.+|..+.+.+ + . + ..+ ..+..|.|-.||++|+.+|.++...+.
T Consensus 128 ~~L~~l~~~~---l----------g-----i--~~~-------~~~~~H~Al~Da~ata~l~~~l~~~~~ 170 (189)
T 1wlj_A 128 VSLRVLSERL---L----------H-----K--SIQ-------NSLLGHSSVEDARATMELYQISQRIRA 170 (189)
T ss_dssp CCHHHHHHHH---T----------C-----C--CCS-------CCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH---c----------C-----C--CCC-------CCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 6777764321 1 0 0 111 113489999999999999999987764
No 17
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.39 E-value=0.057 Score=45.94 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=49.5
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-+..|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~i--~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g 72 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMR-EAGDV--CYADVYRDGTGVVEFVRKEDMTYAVRKLDN 72 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHG-GGSCE--EEEEEETTTEEEEEESSHHHHHHHHHHSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--eEEEEecCCEEEEEECCHHHHHHHHHHHCc
Confidence 45699999999999999999996 78974 567777669999999999999998776654
No 18
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.31 E-value=0.089 Score=42.97 Aligned_cols=58 Identities=12% Similarity=0.193 Sum_probs=48.4
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcccc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLD 453 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~~~ 453 (573)
..+|+-+.|..++..+|++.|+ .||++ .+|..+ ...|||.|.+.++|+..+..++..+
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~~~-~g~afV~f~~~~~A~~A~~~l~g~~ 66 (90)
T 2dnq_A 9 VKLFIGNLPREATEQEIRSLFE-QYGKV--LECDII-KNYGFVHIEDKTAAEDAIRNLHHYK 66 (90)
T ss_dssp EEEEEESCCSSCCHHHHHHHHH-TSSCE--EEEEEE-TTEEEEEESSHHHHHHHHHHHTTCB
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-hCCCE--EEEEEE-CCEEEEEECCHHHHHHHHHHhcCCc
Confidence 4589999999999999999996 78975 455555 8899999999999999988776533
No 19
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=95.22 E-value=0.044 Score=53.00 Aligned_cols=85 Identities=25% Similarity=0.401 Sum_probs=55.6
Q ss_pred CCCeEEechhhhHHHHHHHHh--cCCCCCCHHHHHHHHHccC-C-CCcchhHHhhhchHHHHhhccCCCChHHHHHhhhh
Q 008236 196 EKKLIVGHNCFLDIAHIYSKF--FGPLPLTAEEFISSVNKYF-P-HIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCP 271 (573)
Q Consensus 196 s~kpiVgHN~~~Dl~~l~~~F--~~~LP~~~~eFk~~l~~~F-P-~I~DTK~La~~~~~lk~~~~~~~tsL~~l~~~l~~ 271 (573)
.+.++||||.-+|+-+|-+.| +| ++. .-| + .++||..++.. + . +..+|..+.+.
T Consensus 125 ~~~~lV~hn~~FD~~fL~~~~~~~g-~~~----------~p~~~~~~iDt~~l~~~---~---~--~~~~L~~l~~~--- 182 (224)
T 2f96_A 125 KRAILVGHNSSFDLGFLNAAVARTG-IKR----------NPFHPFSSFDTATLAGL---A---Y--GQTVLAKACQA--- 182 (224)
T ss_dssp SEEEEEETTHHHHHHHHHHHHHHHT-CCC----------CCEEEEEEEEHHHHHHH---H---H--SCCSHHHHHHH---
T ss_pred CCCEEEEeChhhhHHHHHHHHHHcC-CCc----------CCccccceeeHHHHHHH---H---c--CCCCHHHHHHH---
Confidence 467899999999999888766 22 220 002 1 47899887653 1 1 13457665332
Q ss_pred hhccCCccccccCCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHh
Q 008236 272 QIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328 (573)
Q Consensus 272 ~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~~~HEAGyDAymTG~vF~kL~~~l 328 (573)
+ .++ ......|.|..||+.|+.+|.+|...+
T Consensus 183 -~-------------------gi~------~~~~~~H~Al~Da~~ta~l~~~l~~~~ 213 (224)
T 2f96_A 183 -A-------------------GME------FDNREAHSARYDTEKTAELFCGIVNRW 213 (224)
T ss_dssp -T-------------------TCC------CCTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -c-------------------CCC------cCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 2 011 012368999999999999999998766
No 20
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.17 E-value=0.1 Score=43.47 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=48.4
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhccc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
...+|+-+.|..++..+|+++|+ .||++ .+|..+-+ ..|||.|.+.++|+..+..++..
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFS-KYGQI--SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 77 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHH-HHSCC--CEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-hcCCe--EEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 34689999999999999999996 79986 45666543 38999999999999998777653
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.16 E-value=0.077 Score=44.49 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=48.9
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecCc-------eEEEEecchhhHHHHHHHhcccc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDET-------AVFVQFSRAEMVSKFLDLKGSLD 453 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddt-------sa~V~l~~~e~~~~~L~~~~~~~ 453 (573)
...+|+-+.|..++..+|++.|+ .||++ .+|..+-+. .|||.|.+.++|+..+..++...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (105)
T 1x5u_A 15 DATVYVGGLDEKVSEPLLWELFL-QAGPV--VNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK 81 (105)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHH-TTSCE--EEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 45699999999999999999996 78974 566665443 89999999999999988766533
No 22
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.15 E-value=0.062 Score=45.01 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=48.2
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhccc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-+ ..|||.|.+.++|+..+..++..
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFE-KYGRV--GDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGA 78 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHT-TTSCE--EEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCC
Confidence 45699999999999999999996 78874 55666532 57999999999999998876653
No 23
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.14 E-value=0.088 Score=43.19 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=47.4
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+ ...|||.|.+.++|+..+..++.
T Consensus 10 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~v--~~v~~~-~~~afV~f~~~~~a~~A~~~l~g 66 (92)
T 2dgt_A 10 STKLHVGNISPTCTNQELRAKFE-EYGPV--IECDIV-KDYAFVHMERAEDAVEAIRGLDN 66 (92)
T ss_dssp SEEEEEESCCSSCCHHHHHHHHH-TTSCC--CEEEEC-SSEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEE-CCEEEEEECCHHHHHHHHHHhCC
Confidence 35689999999999999999997 79975 455555 44999999999999998877665
No 24
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.10 E-value=0.074 Score=43.56 Aligned_cols=59 Identities=25% Similarity=0.370 Sum_probs=47.5
Q ss_pred ccceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 390 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 390 ~~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
....+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 79 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFS-KYGPI--ADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 79 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHH-TTSCE--EEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-hcCCe--eEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 345689999999999999999996 78975 45555422 3799999999999998877654
No 25
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.09 E-value=0.05 Score=43.77 Aligned_cols=55 Identities=16% Similarity=0.284 Sum_probs=46.2
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHh
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLK 449 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~ 449 (573)
..+|+-+.|..++..+|++.|+ .||++ .+|..+ +...|||.|.+.++++..+..+
T Consensus 13 ~~l~V~~l~~~~t~~~l~~~f~-~~G~i--~~~~~~~~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 13 TTLYVGGLGDTITETDLRNHFY-QFGEI--RTITVVQRQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp CCEEEECCTTTSCHHHHHHHHH-TTSCE--EEEEEEGGGTEEEEEESSHHHHHHHHHTT
T ss_pred cEEEEcCCCCCCCHHHHHHHHH-hCCCE--eEEEEECCCCEEEEEECCHHHHHHHHHHh
Confidence 4589999999999999999996 78975 455554 5689999999999999987755
No 26
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.09 E-value=0.068 Score=43.69 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=47.3
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+- ..|||.|.+.++++..+..++.
T Consensus 10 ~~l~V~nlp~~~t~~~l~~~F~-~~G~v--~~~~~~~-~~afV~f~~~~~a~~A~~~l~g 65 (90)
T 2dnp_A 10 WKIFVGNVSAACTSQELRSLFE-RRGRV--IECDVVK-DYAFVHMEKEADAKAAIAQLNG 65 (90)
T ss_dssp CCEEEESCCTTCCHHHHHHHHH-HHSCE--EEEEECS-SCEEEEESCHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-cCCCE--EEEEEEC-CEEEEEECCHHHHHHHHHHhCC
Confidence 4589999999999999999997 79984 5666654 4999999999999998877665
No 27
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.98 E-value=0.1 Score=43.21 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=48.1
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+ +...|||.|.+.++|+..+..++.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~v--~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g 75 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFD-RFGSI--RTIDHVKGDSFAYIQYESLDAAQAACAKMRG 75 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHH-TTSCE--EEEEECSSSCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--eEEEEeCCCCEEEEEECCHHHHHHHHHHHCC
Confidence 34589999999999999999996 79975 456554 457999999999999998887665
No 28
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.98 E-value=0.097 Score=44.68 Aligned_cols=54 Identities=26% Similarity=0.442 Sum_probs=45.4
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEec------CceEEEEecchhhHHHHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD------ETAVFVQFSRAEMVSKFLD 447 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~id------dtsa~V~l~~~e~~~~~L~ 447 (573)
...+|+-|+|..++..+|+++|+ .||++ .+|..+- ...|||.|.+.++|+..|.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~-~~G~v--~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLE-DKGQV--LNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHH-TSSCE--EEEEEECCCTTSCCCEEEEEESSHHHHHHHHT
T ss_pred CCEEEEECCCCCCCHHHHHHHHh-hcCCE--EEEEEEECCCCCCccEEEEEECCHHHHHHHHH
Confidence 45699999999999999999997 79975 5666653 3689999999999999876
No 29
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=94.88 E-value=0.0052 Score=62.77 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=21.1
Q ss_pred CchhhhcCCCchhhhhhCCCCC
Q 008236 1 MDFLAKYQFDFNACIHEGVSYL 22 (573)
Q Consensus 1 i~FLa~~gFDFNk~~~~GIpYL 22 (573)
|+||+++|||||++.++||||.
T Consensus 118 I~fL~~~G~DF~k~~~~GI~~~ 139 (289)
T 1uoc_A 118 LELLRKSGINFEKHENLGIDVF 139 (289)
T ss_dssp HHHHHHTTCCHHHHHHHCBCHH
T ss_pred HHHHHHcCCChhHHHHcCCCHH
Confidence 6899999999999999999997
No 30
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.86 E-value=0.1 Score=43.76 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=48.1
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC--------ceEEEEecchhhHHHHHHHh-cc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE--------TAVFVQFSRAEMVSKFLDLK-GS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd--------tsa~V~l~~~e~~~~~L~~~-~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||++ .+|..+-+ ..|||.|.+.++|+..+..+ +.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 81 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFS-TFGEL--KTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS 81 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHH-TTSCE--EEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHH-ccCCe--EEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccC
Confidence 45689999999999999999996 79975 45666544 58999999999999998877 44
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=94.76 E-value=0.043 Score=46.38 Aligned_cols=61 Identities=25% Similarity=0.275 Sum_probs=51.4
Q ss_pred ccceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 008236 390 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 390 ~~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+.+|+-+.|..++..+|++.|+ .||...+.+|..+ |. ..|||.|.+.++|+..|..++.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng 75 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQS 75 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcC
Confidence 357799999999999999999996 8998766677765 32 3799999999999999888876
No 32
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=94.75 E-value=0.099 Score=42.06 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=47.3
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 7 ~~l~v~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 70 (87)
T 3bs9_A 7 FHVFVGDLSPEITTAAIAAAFA-PFGRI--SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 70 (87)
T ss_dssp EEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-hcCCE--eEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 4589999999999999999996 79975 56666543 4899999999999998876665
No 33
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=94.74 E-value=0.0043 Score=63.29 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=21.2
Q ss_pred CchhhhcCCCchhhhhhCCCCCC
Q 008236 1 MDFLAKYQFDFNACIHEGVSYLS 23 (573)
Q Consensus 1 i~FLa~~gFDFNk~~~~GIpYLs 23 (573)
|+||++||||||+++++||||..
T Consensus 113 I~fL~~~G~DF~k~~~~GI~~~~ 135 (285)
T 4gmj_B 113 IELLTTSGIQFKKHEEEGIETQY 135 (285)
T ss_dssp HHHHHHHTCCHHHHHHHCBCHHH
T ss_pred HHHHHHcCCCHHHHHHcCCCHHH
Confidence 68999999999999999999953
No 34
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=94.73 E-value=0.11 Score=44.21 Aligned_cols=58 Identities=17% Similarity=0.203 Sum_probs=47.9
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-+ ..|||.|.+.++|+..|..++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 79 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFA-PFGRI--SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 79 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 45699999999999999999996 79985 55666543 4899999999999998876655
No 35
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.71 E-value=0.14 Score=41.96 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=49.9
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcccccCCCC
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGSLDRNNDP 458 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~~~~~~~~ 458 (573)
..+|+-+.|..++..+|+++|+ .||.+ .+|..+-+ ..|||.|.+.++++..+..++...=.+..
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~-~~G~v--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 6 SGLYVGSLHFNITEDMLRGIFE-PFGKI--DNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHHT-TTSCE--EEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-hcCCE--eEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 3589999999999999999996 78874 56666543 38999999999999998877663333333
No 36
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=94.71 E-value=0.066 Score=55.25 Aligned_cols=89 Identities=17% Similarity=0.123 Sum_probs=52.3
Q ss_pred CeEEech-hhhHHHHHHHHh--cC-CCC-CCHHHHHHHHHccCCCCcchhHHhhhch-H-HHHh-hccCCCChHHHHHhh
Q 008236 198 KLIVGHN-CFLDIAHIYSKF--FG-PLP-LTAEEFISSVNKYFPHIIDTKILLNSNS-I-LQQR-MKKSSTSLSKAFSVL 269 (573)
Q Consensus 198 kpiVgHN-~~~Dl~~l~~~F--~~-~LP-~~~~eFk~~l~~~FP~I~DTK~La~~~~-~-lk~~-~~~~~tsL~~l~~~l 269 (573)
.++|+|| .-+|+-+|-+.| +| ++| .. -.++||--++.... . +... ...++-+|..+++.+
T Consensus 119 ~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~------------~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l 186 (314)
T 3u3y_B 119 CCLVAHNGDRYDFPLLQTELARLSTPSPLDG------------TFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRL 186 (314)
T ss_dssp EEEEETTTTTTHHHHHHHHHHTSSSCCTTTT------------CEEEEHHHHHHHHHTTC-------CCCCSHHHHHHHH
T ss_pred cEEEEeCcHHHHHHHHHHHHHHcCCCCCCCC------------ceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHHh
Confidence 6899999 699999999887 33 222 00 02456654432100 0 0000 011355777765431
Q ss_pred hhhhccCCccccccCCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHh
Q 008236 270 CPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328 (573)
Q Consensus 270 ~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~~~HEAGyDAymTG~vF~kL~~~l 328 (573)
+ .++ ....|.|-.||++|+.+|.+++..+
T Consensus 187 ---~-------------------gi~--------~~~aHrAl~DA~ata~lf~~l~~~~ 215 (314)
T 3u3y_B 187 ---Y-------------------WQA--------PTDSHTAEGHVLTLLSICQWKPQAL 215 (314)
T ss_dssp ---H-------------------SSC--------CSCSSSHHHHHHHHHHHHHSSHHHH
T ss_pred ---c-------------------CCC--------CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 011 1358999999999999999987755
No 37
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=94.70 E-value=0.089 Score=45.44 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=50.0
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcccc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLD 453 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~~~ 453 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-+..|||.|.+.++|+..+..++..+
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~v--~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~ 75 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMR-EAGDV--CYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK 75 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHG-GGSCE--EEEEECTTSEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEecCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 45689999999999999999996 78964 56777666999999999999999888776633
No 38
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=94.68 E-value=0.16 Score=41.28 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=46.9
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-----ceEEEEecchhhHHHHHHHhccc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-----TAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-----tsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
..+|+-+.|..++..+|+++|+ .||++ .+|..+-+ ..|||.|.+.++++..+..++..
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~f~-~~G~v--~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 71 (92)
T 2dgv_A 9 CQIFVRNLPFDFTWKMLKDKFN-ECGHV--LYADIKMENGKSKGCGVVKFESPEVAERACRMMNGM 71 (92)
T ss_dssp CEEEECSCCTTCCHHHHHHHHH-TTSCE--EEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 4589999999999999999996 68975 44555433 57999999999999988876653
No 39
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.63 E-value=0.12 Score=42.84 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=47.3
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cC-----ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE-----TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-dd-----tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||++ .+|..+ |. ..|||.|.+.++|+..+..++.
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 80 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICK-AHGTV--KDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDG 80 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHT-TTSCE--EEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCe--EEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCC
Confidence 34689999999999999999996 78975 455554 33 5899999999999998877665
No 40
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=94.55 E-value=0.19 Score=42.01 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=48.2
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 78 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQ-PFGVI--DECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHG 78 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHT-TTSCE--EEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcC
Confidence 35689999999999999999996 78874 56666543 6899999999999998877665
No 41
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=94.52 E-value=0.26 Score=41.97 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=47.0
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|+++|+ .||++ .+|..+-+ ..|||.|.+.+.|+..+..++.
T Consensus 27 ~~l~V~nLp~~~te~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g 90 (108)
T 2jrs_A 27 MRLYVGSLHFNITEDMLRGIFE-PFGRI--ESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 90 (108)
T ss_dssp EEEEEECCCSSCCHHHHHHHHT-TTSCE--EEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 4589999999999999999996 78975 45666522 4899999999999998877665
No 42
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=94.49 E-value=0.0066 Score=60.88 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=21.4
Q ss_pred CchhhhcCCCchhhhhhCCCCCC
Q 008236 1 MDFLAKYQFDFNACIHEGVSYLS 23 (573)
Q Consensus 1 i~FLa~~gFDFNk~~~~GIpYLs 23 (573)
|+||+++|||||++.++||||..
T Consensus 103 i~fL~~~G~DF~k~~~~GI~~~~ 125 (252)
T 2d5r_A 103 IELLTTSGIQFKKHEEEGIETQY 125 (252)
T ss_dssp HHHHHHHTCCHHHHHHHCBCHHH
T ss_pred HHHHHHcCCChhHHHhcCCCHHH
Confidence 58999999999999999999973
No 43
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.45 E-value=0.13 Score=42.97 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=48.2
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEec-----CceEEEEecchhhHHHHHHHhccc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD-----ETAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~id-----dtsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+- ...|||.|.+.++|+..+..++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (103)
T 2d9p_A 15 VVNLYVKNLDDGIDDERLRKAFS-PFGTI--TSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 78 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHTTT-TTSCE--EEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCC
Confidence 34589999999999999999986 78874 5666653 358999999999999988876653
No 44
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=94.43 E-value=0.2 Score=41.98 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=47.4
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||++ .+|..+ | ...|||.|.+.+.|+..+..++.
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 87 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFA-EYGEI--KNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG 87 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHh-ccCCe--EEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcC
Confidence 45689999999999999999996 79975 455554 3 25799999999999998877665
No 45
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.17 Score=41.85 Aligned_cols=58 Identities=16% Similarity=0.281 Sum_probs=47.7
Q ss_pred cceEEEeCCCC-cccHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhccc
Q 008236 391 ECIVIVWGFPS-HLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 391 ~~~v~~~~fp~-~~k~~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
...+|+-+.|. .++..+|++.|+ .||++.- |. |-...|||.|.+.++++..+..++..
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~-~~G~v~~--v~-i~~g~afV~f~~~~~A~~A~~~l~g~ 68 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQ--IN-IKNAFGFIQFDNPQSVRDAIECESQE 68 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHT-TTCCCCE--EE-EETTEEEEEESCHHHHHHHHHHHTCS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHH-hcCCEEE--EE-EeCCEEEEEECCHHHHHHHHHHcCCC
Confidence 34689999997 999999999996 7998643 33 35899999999999999998876653
No 46
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=94.37 E-value=0.0082 Score=62.35 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=21.1
Q ss_pred CchhhhcCCCchhhhhhCCCCC
Q 008236 1 MDFLAKYQFDFNACIHEGVSYL 22 (573)
Q Consensus 1 i~FLa~~gFDFNk~~~~GIpYL 22 (573)
|+||+++||||||+.++||||+
T Consensus 124 I~fL~~~G~DF~k~~~~GI~~~ 145 (333)
T 2p51_A 124 IELLTKSGIDFKKHQEVGIEPA 145 (333)
T ss_dssp HHHHHHTTCCHHHHHHHCBCHH
T ss_pred HHHHHHcCCChhHHHHcCCCHH
Confidence 5899999999999999999997
No 47
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=94.35 E-value=0.14 Score=43.83 Aligned_cols=57 Identities=11% Similarity=0.185 Sum_probs=46.8
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|+++|+ .||.+. +|..+-+ ..|||.|.+.+.++..|..++.
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 89 (115)
T 2cpz_A 26 ANLFIYHLPQEFGDQDLLQMFM-PFGNVV--SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG 89 (115)
T ss_dssp CCEEEESCCSSCCHHHHHHHHG-GGSCCS--EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-hcCCeE--EEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCC
Confidence 4589999999999999999997 799863 4555433 2799999999999998877665
No 48
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.34 E-value=0.16 Score=43.57 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=48.0
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|.-+ +...|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~-~fG~V--~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 73 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALE-KFGTI--CYVMMMPFKRQALVEFENIDSAKECVTFAAD 73 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHT-TTSCE--EEEEEETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCE--EEEEEECCCCEEEEEECCHHHHHHHHHHhcc
Confidence 45799999999999999999996 79975 455544 568999999999999998876643
No 49
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.34 E-value=0.11 Score=43.96 Aligned_cols=58 Identities=17% Similarity=0.336 Sum_probs=46.9
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cC---ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE---TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-dd---tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+. +|... +. ..|||.|.+.++|+..+..++.
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~--~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g 83 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFY-KYGAIR--DIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 83 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHG-GGSCEE--EEEECCSSSSSCCEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCeE--EEEEEECCCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 45699999999999999999996 699753 44443 33 3899999999999999877665
No 50
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=94.29 E-value=0.1 Score=51.51 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=54.2
Q ss_pred CeEEechh-hhHHHHHHHHh--cCCCCCCHHHHHHHHHccCC-CCcchhHHhhhchHHHHhh-----ccCCCChHHHHHh
Q 008236 198 KLIVGHNC-FLDIAHIYSKF--FGPLPLTAEEFISSVNKYFP-HIIDTKILLNSNSILQQRM-----KKSSTSLSKAFSV 268 (573)
Q Consensus 198 kpiVgHN~-~~Dl~~l~~~F--~~~LP~~~~eFk~~l~~~FP-~I~DTK~La~~~~~lk~~~-----~~~~tsL~~l~~~ 268 (573)
.++|+||+ -+|+.+|-+.| +| +|.. .-+ .++||-.+++... +... ..++-+|..+++.
T Consensus 119 ~~lVaHNav~FD~~fL~~~~~r~g-~~~~----------~~~~~~iDtl~l~r~l~--~~~~p~~~~~~~~~~L~~l~~~ 185 (242)
T 3mxm_B 119 CCLVAHNGDRYDFPLLQTELARLS-TPSP----------LDGTFCVDSIAALKALE--QASSPSGNGSRKSYSLGSIYTR 185 (242)
T ss_dssp EEEEETTTTTTHHHHHHHHHHTSS-SCCT----------TTTCEEEEHHHHHHHHH--HHHCC------CCCSHHHHHHH
T ss_pred CEEEEcCChHhhHHHHHHHHHHcC-CCCC----------ccCCeEeehHHHHHHHH--hhcCccccCCCCCcCHHHHHHH
Confidence 67999997 99999999887 33 2210 011 3568877765311 1100 0135567776432
Q ss_pred hhhhhccCCccccccCCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHh
Q 008236 269 LCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328 (573)
Q Consensus 269 l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~~~HEAGyDAymTG~vF~kL~~~l 328 (573)
+ + .++ ....|.|-.||++|+.+|.++...+
T Consensus 186 ~---~-------------------gi~--------~~~~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 186 L---Y-------------------WQA--------PTDSHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp H---H-------------------SSC--------CSSTTSHHHHHHHHHHHHTSSHHHH
T ss_pred H---h-------------------CCC--------CCCCcChHHHHHHHHHHHHHHHHHH
Confidence 1 1 111 1247999999999999999987654
No 51
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=94.29 E-value=0.19 Score=43.56 Aligned_cols=60 Identities=15% Similarity=0.067 Sum_probs=49.1
Q ss_pred ccceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEec------CceEEEEecchhhHHHHHHHhccc
Q 008236 390 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD------ETAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 390 ~~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~id------dtsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
....+|+-+.|..++..+|+++|+ .||.+ .+|..+- ...|||.|.+.++|+..+..++..
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v--~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 99 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFA-EFGTL--KKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV 99 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHH-TTSCC--SEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCe--eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCC
Confidence 456799999999999999999997 69976 4556553 358999999999999988876653
No 52
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=94.29 E-value=0.13 Score=43.30 Aligned_cols=59 Identities=17% Similarity=0.100 Sum_probs=48.0
Q ss_pred ccceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c-----CceEEEEecchhhHHHHHHHhcc
Q 008236 390 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D-----ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 390 ~~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d-----dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
....+|+-+.|..++..+|++.|+ .||++ .+|..+ | ...|||.|.+.++|+..+..++.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 92 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFA-EFGTL--KKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG 92 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHH-TTSCE--EEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 345699999999999999999997 79975 456665 2 34899999999999998876655
No 53
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=94.28 E-value=0.16 Score=41.63 Aligned_cols=58 Identities=22% Similarity=0.217 Sum_probs=47.5
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++++..+..++.
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~-~~G~i--~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 79 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFL-QAGPL--TKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNG 79 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-hcCCE--EEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 45689999999999999999996 79975 45555433 4899999999999998876665
No 54
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.26 E-value=0.12 Score=42.71 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=47.0
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 72 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFS-AYGPL--SELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG 72 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHH-TTSCE--EEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCE--eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCC
Confidence 4589999999999999999996 78975 45665433 4899999999999998877665
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.25 E-value=0.17 Score=42.16 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=48.1
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-----ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-----TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-----tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||++ .+|..+-+ ..|||.|.+.+.|+..+..++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 77 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFS-QIGPC--KSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG 77 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHH-HHSCE--EEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCccCCHHHHHHHHH-hcCCE--eEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 34689999999999999999996 79975 45666543 5899999999999998886665
No 56
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.20 E-value=0.23 Score=41.14 Aligned_cols=60 Identities=12% Similarity=0.224 Sum_probs=48.3
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEE-ecCceEEEEecchhhHHHHHHHhccc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYH-VDETAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~-iddtsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
...+|+-+.|..++..+|+++|+ .||.+.+ .+.+ -....|||.|.+.++|+..+..++..
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~-~~G~v~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALR-ELGSVPL-RLTWQGPRRRAFLHYPDSAAAQQAVSCLQGL 79 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHH-HTTCCCS-EEEEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCcCcHHHHHHHHH-hcCCEEE-EEEcCCCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 34689999999999999999996 7998753 3333 23578999999999999988777653
No 57
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=94.19 E-value=0.14 Score=53.44 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=64.4
Q ss_pred hhhhccHHHHHHH----HhcC-----CCeEEechhhhHHH-HHHHHh--cC-CCCCCHHHHHHHHHccCCCCcchhHHhh
Q 008236 180 IKASIGFRHVIDL----LSSE-----KKLIVGHNCFLDIA-HIYSKF--FG-PLPLTAEEFISSVNKYFPHIIDTKILLN 246 (573)
Q Consensus 180 l~~~~Gf~~v~~~----l~~s-----~kpiVgHN~~~Dl~-~l~~~F--~~-~LP~~~~eFk~~l~~~FP~I~DTK~La~ 246 (573)
+..+.-|..|++. |... ++++|+||+-+|+. +|-..| ++ ++|. ++-.++||+.++.
T Consensus 197 v~~ap~~~eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~-----------~~~~~iDt~~l~~ 265 (349)
T 1zbu_A 197 VDRADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP-----------FAKKWINIRKSYG 265 (349)
T ss_dssp HHTSEEHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG-----------GGSEEEEHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCcc-----------ccchHHHHHHHHH
Confidence 4455667666654 3333 16899999999999 887765 22 3332 1224779987753
Q ss_pred hchHHHHhhccCCCChHHHHHhhhhhhccCCccccccCCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHH
Q 008236 247 SNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACS 326 (573)
Q Consensus 247 ~~~~lk~~~~~~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~~~HEAGyDAymTG~vF~kL~~ 326 (573)
. +.+ ......+|..+.+. + .++ ..+..|.|-.||..|+.+|.+|..
T Consensus 266 ~---~~~-~~~~~~~L~~l~~~----~-------------------gi~-------~~g~~HrAl~DA~ata~ll~~ll~ 311 (349)
T 1zbu_A 266 N---FYK-VPRSQTKLTIMLEK----L-------------------GMD-------YDGRPHCGLDDSKNIARIAVRMLQ 311 (349)
T ss_dssp H---HHT-CCGGGGSHHHHHHH----T-------------------TCC-------CCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred H---Hhc-CCCCCCCHHHHHHH----c-------------------CCC-------CCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 111 11112467766432 1 111 124679999999999999999987
Q ss_pred Hh
Q 008236 327 HL 328 (573)
Q Consensus 327 ~l 328 (573)
..
T Consensus 312 ~~ 313 (349)
T 1zbu_A 312 DG 313 (349)
T ss_dssp TT
T ss_pred hc
Confidence 65
No 58
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=94.17 E-value=0.17 Score=43.72 Aligned_cols=57 Identities=11% Similarity=0.157 Sum_probs=47.7
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|+++|+ .||.+ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g 70 (116)
T 2fy1_A 8 GKLFIGGLNRETNEKMLKAVFG-KHGPI--SEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG 70 (116)
T ss_dssp CEEEEECCTTTCCHHHHHHHHH-TSSCC--SEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 3589999999999999999996 79985 45666544 5899999999999998877665
No 59
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=94.16 E-value=0.22 Score=42.45 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=47.3
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC----ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE----TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd----tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~v--~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g 69 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFG-KYGPI--RQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSG 69 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHH-TTSCE--EEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 34689999999999999999996 78975 45655432 4899999999999998776655
No 60
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.16 E-value=0.1 Score=43.64 Aligned_cols=58 Identities=16% Similarity=0.300 Sum_probs=47.2
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||++ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 79 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFR-PFGSI--SRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 79 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTST-TTCCE--EEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCe--EEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCC
Confidence 45689999999999999999986 78875 45666543 2799999999999998876655
No 61
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=94.16 E-value=0.12 Score=42.32 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=46.0
Q ss_pred EEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcccc
Q 008236 394 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGSLD 453 (573)
Q Consensus 394 v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~~~ 453 (573)
+|+-+.|..++..+|++.|+ .||...|.+|..+-| ..|||.|.+.++++..+..++..+
T Consensus 4 l~V~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~ 69 (90)
T 3p5t_L 4 LYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE 69 (90)
T ss_dssp CEEESCCTTCCHHHHHHHHH-TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSC
T ss_pred EEEeCCCCCCCHHHHHHHHH-HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCe
Confidence 78889999999999999996 799433456666543 269999999999999887777633
No 62
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=94.14 E-value=0.21 Score=41.77 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=48.0
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 77 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFE-EFGKI--YELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHE 77 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHH-HHSCC--CEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--eEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 34589999999999999999997 79975 45665543 5899999999999998887765
No 63
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.14 E-value=0.14 Score=42.10 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=46.5
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEE-E-ecCce--EEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVY-H-VDETA--VFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~-~-iddts--a~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||++ .++. . .|... |||.|.+.+.++..+..++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~v--~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g 76 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLV-QYGVV--ESCEQVNTDSETAVVNVTYSSKDQARQALDKLNG 76 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHH-HHSCE--EEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCCHHHHHHHHH-hcCCe--EEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 34689999999999999999996 79975 5563 3 34333 99999999999998876665
No 64
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.14 E-value=0.19 Score=41.65 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=46.4
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|+..|. ++.
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~ 73 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFK-KFGVV--TEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHF 73 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHS-SSSCE--EEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCC
Confidence 34689999999999999999996 68875 56666533 479999999999999987 443
No 65
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=94.13 E-value=0.15 Score=41.12 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=44.4
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHH
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDL 448 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~ 448 (573)
..+|+-+.|..++..+|++.|+ .||++ .+|.++-+ ..|||.|.+.++++..|..
T Consensus 12 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 12 GKMFVGGLSWDTSKKDLKDYFT-KFGEV--VDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp TEEEEECCCTTCCHHHHHHHHT-TTSCE--EEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hCCCE--EEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 4589999999999999999996 78875 46666522 3799999999999998754
No 66
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.11 E-value=0.19 Score=41.95 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=47.6
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEec-----CceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD-----ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~id-----dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+- ...|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~-~~G~v--~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 77 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFG-QFGKI--LDVEIIFNERGSKGFGFVTFENSADADRAREKLHG 77 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGG-GTSCE--EEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 34689999999999999999996 78975 4566653 35899999999999998876665
No 67
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=94.07 E-value=0.2 Score=41.69 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=47.0
Q ss_pred EEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEec--CceEEEEecchhhHHHHHHHhccc
Q 008236 394 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD--ETAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 394 v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~id--dtsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
+|+-+.|..++..+|+++|+ .||++ .+|..+- ...|||.|.+.++|+..+..++..
T Consensus 3 l~V~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~ 60 (101)
T 2hvz_A 3 VYVGNLGTGAGKGELERAFS-YYGPL--RTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 60 (101)
T ss_dssp EEEECCCSSCSHHHHHHHHH-HHCCC--SEEEEESSSSSEEEEECSSHHHHHHHHHHHHHS
T ss_pred EEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCC
Confidence 78889999999999999996 79986 4566553 589999999999999988876653
No 68
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=94.03 E-value=0.15 Score=45.17 Aligned_cols=58 Identities=26% Similarity=0.398 Sum_probs=47.6
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||++ .+|..+-+ ..|||.|.+.++|+..|..++.
T Consensus 46 ~~~l~V~nLp~~~te~~L~~~F~-~~G~I--~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng 110 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERDLREVFS-KYGPI--ADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 110 (129)
T ss_dssp SSCBCEETCTTSCCHHHHHHHHT-TTSCE--EEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 45688999999999999999996 78975 45666532 4899999999999998887765
No 69
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.03 E-value=0.14 Score=41.79 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=46.8
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++++..+..++.
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~-~~G~v--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 80 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFS-KYGKV--VKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN 80 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTT-TTSCE--EEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-hcCCe--EEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC
Confidence 34589999999999999999996 78874 45666533 4799999999999998776554
No 70
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=94.02 E-value=0.12 Score=41.47 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=46.0
Q ss_pred eEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe--------cCceEEEEecchhhHHHHHHHhcc
Q 008236 393 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV--------DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 393 ~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i--------ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
.+|+-+.|..++..+|++.|+ .||++ .+|..+ ....|||.|.+.++|+..+..++.
T Consensus 6 ~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (88)
T 4a8x_A 6 KVHIGRLTRNVTKDHIMEIFS-TYGKI--KMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG 69 (88)
T ss_dssp EEEEECCCTTCCHHHHHHHHH-TTSCE--EEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hCCCE--EEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCC
Confidence 589999999999999999996 78975 344443 345899999999999998886665
No 71
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.00 E-value=0.17 Score=44.87 Aligned_cols=57 Identities=7% Similarity=0.225 Sum_probs=48.1
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKG 450 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~ 450 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+ |...|||.|.+.++|+..+..++
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~-~fG~V--~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~ 88 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGL-PFGKV--TNLLMLKGKNQAFIEMNTEEAANTMVNYYT 88 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHT-TTSCC--CEEEEEGGGTEEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEeCCCCEEEEEECCHHHHHHHHHHhc
Confidence 45789999999999999999996 89986 455555 56899999999999999887665
No 72
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=94.00 E-value=0.17 Score=43.82 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=49.1
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcccc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGSLD 453 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~~~ 453 (573)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+ | ...|||.|.+.+.|+..+..++...
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 88 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFA-EYGEI--KNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD 88 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHH-TTSCE--EEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence 45699999999999999999996 78965 566664 3 4599999999999999988766633
No 73
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=94.00 E-value=0.15 Score=43.17 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=48.0
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-+ ..|||.|.+.+.++..+..++.
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 90 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFC-DYGEI--KNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG 90 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC
Confidence 45689999999999999999996 78975 56666533 5899999999999998876655
No 74
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=93.98 E-value=0.14 Score=40.69 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=45.8
Q ss_pred eEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 008236 393 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 393 ~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
.+|+-+.|..++..+|++.|+ .||++ .+|..+ | ...|||.|.+.++|+..+..++.
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~-~~G~i--~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g 65 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFK-DFPSY--LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 65 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHT-TSTTE--EEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCe--eEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcC
Confidence 378999999999999999996 78875 455555 4 35799999999999998876654
No 75
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.93 E-value=0.27 Score=40.77 Aligned_cols=59 Identities=19% Similarity=0.081 Sum_probs=48.1
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||+..|.+|. +-...|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~g~g~v~~~~-~~~g~afV~f~~~~~A~~A~~~l~g 73 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFN-NIKPGAVERVK-KIRDYAFVHFSNREDAVEAMKALNG 73 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHH-TTSTTCEEEEE-ECSSEEEEEESSHHHHHHHHHHHSS
T ss_pred cCEEEEeCCCCCCCHHHHHHHHH-hcCCcceEEEE-EeCCeEEEEeCCHHHHHHHHHHhCC
Confidence 35689999999999999999996 78554455554 4577999999999999998887665
No 76
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=93.92 E-value=0.15 Score=41.20 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=45.3
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++++..+ .++.
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g 69 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFH-GCGSV--NRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDE 69 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHG-GGCCE--EEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hCCCE--EEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCC
Confidence 4589999999999999999996 78975 56666543 38999999999999876 4443
No 77
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.88 E-value=0.21 Score=41.40 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=48.5
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhccc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
...+|+-+.|..++..+|+++|+ .||++. +|..+ +...|||.|.+.+.|+..+..++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~--~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~ 74 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFE-KYGKAG--EVFIHKDKGFGFIRLETRTLAEIAKVELDNM 74 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTS-TTCCCS--EEEEETTTTEEEEECSSSHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHh-hcCCeE--EEEEecCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 34689999999999999999996 799864 44443 6789999999999999988776653
No 78
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=93.84 E-value=0.15 Score=42.17 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=46.9
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 66 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCS-NVGPV--INLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNG 66 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHH-TTSCE--EEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCCHHHHHHHHH-hcCCE--EEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 3589999999999999999997 78974 56666533 5799999999999998877665
No 79
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.2 Score=41.64 Aligned_cols=57 Identities=11% Similarity=0.211 Sum_probs=47.9
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|+++|+ .||.+ .+|..+ +...|||.|.+.++++..+..++.
T Consensus 28 ~~l~V~nlp~~~~~~~l~~~f~-~~G~i--~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 85 (101)
T 2la4_A 28 TTAYIGNIPHFATEADLIPLFQ-NFGFI--LDFKHYPEKGCCFIKYDTHEQAAVCIVALAN 85 (101)
T ss_dssp CEEEEESCCTTCCHHHHHHHHH-TTSCC--SEEEEETTTTEEEEECSSHHHHHHHHHHHTT
T ss_pred CEEEEcCCCcccCHHHHHHHHH-hCCCE--EEEEEecCCCEEEEEECCHHHHHHHHHHhCC
Confidence 4589999999999999999996 78986 455554 678999999999999998876654
No 80
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.79 E-value=0.17 Score=43.20 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=47.5
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.+.|+..|..++.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~ 81 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFE-GFGDI--EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 81 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHH-TTSCE--EEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCe--eEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC
Confidence 35689999999999999999996 78974 56676644 3899999999999998766554
No 81
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=93.78 E-value=0.16 Score=43.36 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=48.3
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+ ...|||.|.+.++|+..+..++.
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~-~~G~i--~~v~i~-kg~afV~f~~~~~A~~Ai~~l~g 87 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFG-PFGPM--KEVKIL-NGFAFVEFEEAESAAKAIEEVHG 87 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHT-TTSCC--CEEEEE-TTEEEEECSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-hcCCE--EEEEEE-CCEEEEEECCHHHHHHHHHHcCC
Confidence 45689999999999999999996 79976 455555 89999999999999998877665
No 82
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.76 E-value=0.13 Score=40.26 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=44.7
Q ss_pred EEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhc
Q 008236 394 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKG 450 (573)
Q Consensus 394 v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~ 450 (573)
+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++++..+...+
T Consensus 3 l~v~nlp~~~t~~~l~~~F~-~~G~v--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFG-QFGEV--KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHT-TTSCC--CCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred EEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 78889999999999999996 78986 34555433 489999999999999887666
No 83
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.71 E-value=0.31 Score=40.20 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=46.7
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||++.. +|..+-+ ..|||.|.+.++++..+..++.
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 74 (99)
T 2div_A 10 ASLWMGDLEPYMDENFISRAFA-TMGETVM-SVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING 74 (99)
T ss_dssp SEEEECSCCTTCCHHHHHHHHH-HTTCCCC-EEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcC
Confidence 4589999999999999999996 7998631 4555433 4799999999999998876665
No 84
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=93.70 E-value=0.15 Score=43.92 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=45.9
Q ss_pred eEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-----ceEEEEecchhhHHHHHHHhcc
Q 008236 393 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-----TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 393 ~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-----tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
.+|+-+.|..++..+|+++|+ .||++ .+|..+-| ..|||.|.+.++|+..+..++.
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~-~~G~v--~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~ 67 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFS-AFGNI--LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 67 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCHHHHHHHHh-ccCCE--EEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCC
Confidence 489999999999999999996 79975 45555432 3699999999999998776655
No 85
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.65 E-value=0.19 Score=42.93 Aligned_cols=57 Identities=7% Similarity=0.228 Sum_probs=46.9
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKG 450 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~ 450 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|.-+ |...|||.|.+.++|+..+..++
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~-~fG~v--~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~ 72 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGL-PFGKV--TNILMLKGKNQAFLELATEEAAITMVNYYS 72 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTT-TTSCE--EEEEEETTTTEEEEEESSHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEECCCCEEEEEECCHHHHHHHHHHhc
Confidence 45789999999999999999986 79975 455544 56899999999999999877654
No 86
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.65 E-value=0.19 Score=42.39 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=47.3
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKG 450 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~ 450 (573)
...+|+-+.|..++..+|++.|+ .||++ .+|..+ | ...|||.|.+.++|+..|..++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQ-QFGDL--KYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHH-TTSCE--EEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-hcCCe--EEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 34589999999999999999996 79975 455554 2 3479999999999999988876
No 87
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=93.64 E-value=0.19 Score=40.12 Aligned_cols=56 Identities=11% Similarity=0.189 Sum_probs=44.0
Q ss_pred eEEEeCCCCcc------cHHHHHHHHHhhhCCCceeEEEEec-----CceEEEEecchhhHHHHHHHhcc
Q 008236 393 IVIVWGFPSHL------KAWDIRECISKVYGPTSVISVYHVD-----ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 393 ~v~~~~fp~~~------k~~dI~~~~~~~fg~~~v~~v~~id-----dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
.+|+-+.|..+ +..+|++.|+ .||++ .+|..+. ...|||.|.+.++|+..+..++.
T Consensus 3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~i--~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng 69 (81)
T 2krb_A 3 VIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKI--TNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG 69 (81)
T ss_dssp EEEEESCCCCCTTTHHHHHHHHHHHHH-TTCCE--EEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSS
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHh-hcCCe--EEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcC
Confidence 48888999988 6699999996 79975 4565544 35899999999999987665554
No 88
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.61 E-value=0.26 Score=41.05 Aligned_cols=54 Identities=26% Similarity=0.394 Sum_probs=44.5
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLD 447 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~ 447 (573)
...+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.+.++..|.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFS-TFGEV--LMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHG-GGSCE--EEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH
T ss_pred CCEEEEEcCCCcCCHHHHHHHHH-hcCCe--EEEEEEecCCCCCccceEEEEECCHHHHHHHHH
Confidence 34589999999999999999996 79975 45666533 279999999999999876
No 89
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.58 E-value=0.12 Score=42.46 Aligned_cols=57 Identities=9% Similarity=0.177 Sum_probs=46.1
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEE-EEe-c------CceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISV-YHV-D------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v-~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||++. +| ..+ | ...|||.|.+.++|+..+..++.
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~--~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 70 (96)
T 1x5t_A 6 SGIFIGNLDPEIDEKLLYDTFS-AFGVIL--QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 70 (96)
T ss_dssp CEEEEECCCTTCCHHHHHHHHH-TTSCBS--SCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCee--EEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCC
Confidence 4589999999999999999996 799863 44 333 3 35899999999999998876655
No 90
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=93.58 E-value=0.14 Score=45.64 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=47.1
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecCc-------eEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDET-------AVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddt-------sa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+. .|||.|.+.++++..|..++.
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~-~~G~i--~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g 111 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFE-KYGRV--GDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 111 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHG-GGSCC--SEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 45699999999999999999996 79976 456665332 799999999999998766554
No 91
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.55 E-value=0.14 Score=43.32 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=48.5
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+ |...|||.|.+.++|+..+..++.
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~-~~G~i--~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g 83 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFS-PFGQI--MEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 83 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHH-HHSCE--EEEEEETTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEeCCCCEEEEEECCHHHHHHHHHHcCC
Confidence 34589999999999999999997 79975 455554 578999999999999998877655
No 92
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=93.55 E-value=0.17 Score=40.43 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=46.4
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||++ .+|..+ | ...|||.|.+.++|+..+..++.
T Consensus 8 ~~l~V~nl~~~~~~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 71 (85)
T 3mdf_A 8 RVLYVGGLAEEVDDKVLHAAFI-PFGDI--TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 71 (85)
T ss_dssp SEEEEECCCTTCCHHHHHHHHG-GGSCE--EEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHh-ccCCE--EEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCC
Confidence 4689999999999999999996 79975 455543 3 45799999999999998876655
No 93
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=93.49 E-value=0.16 Score=39.78 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=41.7
Q ss_pred EEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHH
Q 008236 394 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLD 447 (573)
Q Consensus 394 v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~ 447 (573)
+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.+.|+..|.
T Consensus 2 l~v~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFE-QFGKV--DDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHH-TTSCC--SEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred EEEecCCCCCCHHHHHHHHH-hcCCE--EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 67889999999999999997 78986 35555433 489999999999988765
No 94
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=93.47 E-value=0.27 Score=42.30 Aligned_cols=58 Identities=16% Similarity=0.258 Sum_probs=48.9
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..++|+-+.|..++..+|+++|+ .||++ .+|.-+ +...|||.+.+.++|+..++.++.
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~-~fG~V--~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~ 79 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQ-EFGPI--SYVVVMPKKRQALVEFEDVLGACNAVNYAAD 79 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHh-ccCCE--EEEEEEcCCCEEEEEECCHHHHHHHHHHhcC
Confidence 35689999999999999999996 89985 455544 678999999999999998887765
No 95
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.45 E-value=0.24 Score=42.06 Aligned_cols=57 Identities=12% Similarity=0.136 Sum_probs=46.7
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|+++|+ .||.+ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 16 ~~l~V~nlp~~~~~~~l~~~f~-~~G~i--~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 78 (114)
T 2do0_A 16 STVFVANLDYKVGWKKLKEVFS-MAGVV--VRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNG 78 (114)
T ss_dssp SCEEEESCCTTCCHHHHHHHHT-TTSCE--EEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 4589999999999999999996 78865 45555432 4899999999999998876665
No 96
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=93.45 E-value=0.2 Score=41.93 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=46.8
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|+++|+ .||.+ .+|..+ ...|||.|.+.++|+..+..++.
T Consensus 12 ~~l~V~nl~~~~t~~~l~~~F~-~~G~i--~~v~~~-~~~afV~f~~~~~a~~A~~~l~g 67 (103)
T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFS-QFGKL--ERVKKL-KDYAFIHFDERDGAVKAMEEMNG 67 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHHHH-HHSCE--EEEEEC-SSCEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEE-CCEEEEEeCCHHHHHHHHHHHCC
Confidence 4589999999999999999996 79975 455544 66999999999999998877665
No 97
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=93.44 E-value=0.079 Score=43.90 Aligned_cols=55 Identities=22% Similarity=0.337 Sum_probs=43.9
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhC-CCceeEEEEe-c------CceEEEEecchhhHHHHHHHh
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYG-PTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLK 449 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg-~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~ 449 (573)
+++|+-|.|..++..||++.|+ .|| ++ .+|..+ | ...|||.|.+.++|+..|..+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~-~~G~~v--~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQ-SHGVQA--REVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHH-HHTCCC--SBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HhCCEe--EEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc
Confidence 5699999999999999999996 788 43 344444 3 245999999999999987654
No 98
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=93.26 E-value=0.2 Score=48.62 Aligned_cols=87 Identities=21% Similarity=0.261 Sum_probs=51.3
Q ss_pred CeEEechh-hhHHHHHHHHh--cC-CCCCCHHHHHHHHHccCCCCcchhHHhhhchHHHHhh------ccCCCChHHHHH
Q 008236 198 KLIVGHNC-FLDIAHIYSKF--FG-PLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRM------KKSSTSLSKAFS 267 (573)
Q Consensus 198 kpiVgHN~-~~Dl~~l~~~F--~~-~LP~~~~eFk~~l~~~FP~I~DTK~La~~~~~lk~~~------~~~~tsL~~l~~ 267 (573)
.++||||+ -+|+-+|-+.| +| ++|.. ..++||-.++.... +..+ ..++.+|..+.+
T Consensus 114 ~~lVahN~~~FD~~fL~~~~~~~g~~~~~~------------~~~iDt~~l~~~~~--~~~~p~~~~p~~~~~~L~~l~~ 179 (238)
T 1y97_A 114 ICLVAHNGFDYDFPLLCAELRRLGARLPRD------------TVCLDTLPALRGLD--RAHSHGTRARGRQGYSLGSLFH 179 (238)
T ss_dssp EEEEETTTTTTHHHHHHHHHHHHTCCCCTT------------CEEEEHHHHHHHHH--HHC----------CCSHHHHHH
T ss_pred CEEEecCchhhhHHHHHHHHHHcCCCCCCC------------CEEEEHHHHHHHHH--hccCccccCCCCCCCCHHHHHH
Confidence 68999999 99999988766 22 22210 13689877654321 1100 113566776643
Q ss_pred hhhhhhccCCccccccCCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHHh
Q 008236 268 VLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHL 328 (573)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~~~HEAGyDAymTG~vF~kL~~~l 328 (573)
. .+ .++ ....|.|-.||++|+.+|.+|...+
T Consensus 180 ~---~~-------------------gi~--------~~~~H~Al~Da~~ta~l~~~l~~~~ 210 (238)
T 1y97_A 180 R---YF-------------------RAE--------PSAAHSAEGDVHTLLLIFLHRAAEL 210 (238)
T ss_dssp H---HH-------------------SSC--------CC---CHHHHHHHHHHHHHHTHHHH
T ss_pred H---Hh-------------------CCC--------CccCccHHHHHHHHHHHHHHHHHHH
Confidence 1 01 011 1347999999999999999987655
No 99
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=93.17 E-value=0.19 Score=43.05 Aligned_cols=58 Identities=17% Similarity=0.343 Sum_probs=46.9
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+ | ...|||.|.+.++++..+..++.
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 104 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFL-PFGNV--ISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG 104 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTT-TSCEE--EEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC
Confidence 45689999999999999999986 68864 456665 3 24899999999999998776654
No 100
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=93.13 E-value=0.27 Score=44.30 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=47.8
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|.++-+ ..|||.|.+.++|+..|..++.
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 103 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFS-KSGDI--KKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 103 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 35699999999999999999996 79975 56666533 4899999999999998887665
No 101
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=93.07 E-value=0.31 Score=41.25 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=47.5
Q ss_pred ceEEEeCCCCc-ccHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSH-LKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~-~k~~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|.. ++..+|+++|+ .||++.- | .|....|||.|.+.++|+..+..++.
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~-~~G~v~~--v-~i~~g~afV~f~~~~~A~~A~~~l~g 84 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFS-KYGRVAG--C-SVHKGYAFVQYSNERHARAAVLGENG 84 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHG-GGSCCSE--E-EEETTEEEEECSSSHHHHHHHHHHTT
T ss_pred cEEEEeCCCcccCCHHHHHHHHH-hCCCeEE--E-EEeCCEEEEEECCHHHHHHHHHHcCC
Confidence 46899999999 99999999996 7998643 3 33889999999999999998877665
No 102
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=93.07 E-value=0.48 Score=39.19 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=46.6
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeE------EEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVIS------VYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~------v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-|.|..++..+|++.|+ .||.+.... |..+ |. ..|||.|.+.++++..+..++.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHT-TTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 45699999999999999999996 789764200 3333 32 3899999999999998876665
No 103
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.07 E-value=0.18 Score=40.40 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=46.1
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++++..+..++.
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~-~~G~i--~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 6 SGLYIRGLQPGTTDQDLVKLCQ-PYGKI--VSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp CEEEEESCCTTCCHHHHHTTST-TTSCE--EEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC
Confidence 3589999999999999999886 78875 45655432 4799999999999998876655
No 104
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.04 E-value=0.21 Score=43.28 Aligned_cols=56 Identities=7% Similarity=0.227 Sum_probs=47.2
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKG 450 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~ 450 (573)
..+|+-+.|..++..+|+++|+ .||.+ .+|.-+ |...|||.|.+.++|+..+..++
T Consensus 17 ~~LfV~nLp~~vte~dL~~lF~-~fG~V--~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~ 73 (105)
T 1sjq_A 17 RVIHIRKLPIDVTEGEVISLGL-PFGKV--TNLLMLKGKNQAFIEMNTEEAANTMVNYYT 73 (105)
T ss_dssp CEEEECSCCTTSCHHHHHHHHH-HHCCE--EEEEEETTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEcCCCEEEEEECCHHHHHHHHHHhc
Confidence 4589999999999999999996 89985 455554 67899999999999999877554
No 105
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.02 E-value=0.23 Score=41.61 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=45.1
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHH
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDL 448 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~ 448 (573)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|+..|..
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~F~-~~G~v--~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 17 GKLFVGGLDWSTTQETLRSYFS-QYGEV--VDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp SEECCBSCCTTCCHHHHHHHHH-TTSCE--EEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 4588999999999999999996 78975 45666543 4899999999999998876
No 106
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=93.01 E-value=0.27 Score=45.02 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=48.3
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||++ .+|.++-+ ..|||.|.+.+.|+..|..++.
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 136 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFC-DYGEI--KNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG 136 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhh-cCCCE--EEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC
Confidence 45699999999999999999996 79975 56666533 6899999999999998877665
No 107
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.98 E-value=0.14 Score=43.83 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=48.1
Q ss_pred ccceEEEeCCCCcccHHHHH---HHHHhhhCCCceeEEEEecC----------ceEEEEecchhhHHHHHHHhccc
Q 008236 390 FECIVIVWGFPSHLKAWDIR---ECISKVYGPTSVISVYHVDE----------TAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 390 ~~~~v~~~~fp~~~k~~dI~---~~~~~~fg~~~v~~v~~idd----------tsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
..+.+|+-+.|..++..+|+ ++|+ .||++ .+|..+-+ ..|||.|.+.++|+..+..++..
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~-~~G~i--~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFG-KFGKI--HKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV 86 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTT-TTSCE--EEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhh-ccCCE--EEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC
Confidence 35679999999999999998 8885 78875 45555533 28999999999999988876653
No 108
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.97 E-value=0.39 Score=39.89 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=46.6
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||.+. +|..+ | ...|||.|.+.++|+..+..++.
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~-~~G~i~--~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 72 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFS-EVGPVV--SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG 72 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHH-TTSCCS--EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSS
T ss_pred cEEEEeCCCCcCCHHHHHHHHH-hcCCee--EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 4589999999999999999996 799863 44444 3 35899999999999998877665
No 109
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.97 E-value=0.24 Score=40.44 Aligned_cols=56 Identities=9% Similarity=0.088 Sum_probs=47.3
Q ss_pred eEEEeCCCCcccHHHHHHHHHhhhCC-CceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 008236 393 IVIVWGFPSHLKAWDIRECISKVYGP-TSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 393 ~v~~~~fp~~~k~~dI~~~~~~~fg~-~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
.+|+-+.|..++..+|++.|+ .||. +.. +.......|||.|.+.++|+..+..++.
T Consensus 10 ~l~V~nLp~~~t~~~l~~~F~-~~G~vv~~--~~~~~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 10 KLYIGNLSPAVTADDLRQLFG-DRKLPLAG--QVLLKSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp CEEEECCCTTCCHHHHHHHHH-HTTCCCSS--CEEEETTEEEECCSCHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHH-HcCCceEE--EEEcCCCEEEEEECCHHHHHHHHHHccC
Confidence 489999999999999999996 7998 443 3446789999999999999998877665
No 110
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.91 E-value=0.29 Score=41.10 Aligned_cols=57 Identities=19% Similarity=0.206 Sum_probs=46.1
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe--------cCceEEEEecchhhHHHHHHHhc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV--------DETAVFVQFSRAEMVSKFLDLKG 450 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i--------ddtsa~V~l~~~e~~~~~L~~~~ 450 (573)
..+|+-+.|..++..+|++.|. .||.. |.+|.++ ....|||.|.+.++|+..+..++
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~-~~G~~-v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 9 CRLFIGGIPKMKKREEILEEIA-KVTEG-VLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp EEEEEECCCTTSCHHHHHHHHH-HHSTT-EEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred CEEEEeCCCCcCCHHHHHHHHH-HhcCC-ceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 4589999999999999999996 78862 3567766 23589999999999998876653
No 111
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=92.91 E-value=0.29 Score=40.82 Aligned_cols=57 Identities=16% Similarity=0.319 Sum_probs=47.1
Q ss_pred cceEEEeCCCC-cccHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPS-HLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~-~~k~~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|. .++..+|++.|+ .||.+. +|. |-...|||.|.+.++|+..+..++.
T Consensus 22 ~~~l~V~nLp~~~~t~~~L~~~F~-~~G~v~--~v~-i~~g~afV~f~~~~~A~~Ai~~l~g 79 (97)
T 2xnq_A 22 KSRLFIGNLPLKNVSKEDLFRIFS-PYGHIM--QIN-IKNAFGFIQFDNPQSVRDAIEXESQ 79 (97)
T ss_dssp TCEEEEESCCSSCCCHHHHHHHHG-GGSCEE--EEE-ECSSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCcccCCHHHHHHHHH-hcCCEE--EEE-EeCCEEEEEECCHHHHHHHHHHcCC
Confidence 45689999997 999999999996 799753 343 3589999999999999998876655
No 112
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.87 E-value=0.2 Score=42.96 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=47.7
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
.+.+|+-+.|..++..+|+++|+ .||++ .+|..+ +...|||.|.+.++|+..+..++.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~-~~G~i--~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g 68 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFS-RFGSL--GRVLLPEGGITAIVEFLEPLEARKAFRHLAY 68 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHH-TTSCE--EEEECCSSSSCEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEeCCCCEEEEEeCCHHHHHHHHHHhCC
Confidence 45688889999999999999997 79976 344443 667899999999999998777765
No 113
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.87 E-value=0.34 Score=39.92 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=45.7
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c---------CceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D---------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d---------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||++ .+|..+ | ...|||.|.+.++|+..+..++.
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g 72 (98)
T 2cpf_A 6 SGLFIKNLNFSTTEETLKGVFS-KVGAI--KSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG 72 (98)
T ss_dssp CCEEEESCCTTCCHHHHHHHHH-TTSCE--EEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC
Confidence 3489999999999999999996 79975 344443 2 24899999999999998776655
No 114
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.86 E-value=0.29 Score=41.58 Aligned_cols=58 Identities=10% Similarity=0.217 Sum_probs=47.3
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-+ ..|||.|.+.+.|+..|..++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 88 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLK-PFGQV--ISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNG 88 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTT-TTSCE--EEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 35689999999999999999986 68874 45665533 4799999999999999887665
No 115
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=92.83 E-value=0.32 Score=40.88 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=45.2
Q ss_pred eEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 008236 393 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 393 ~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
.+|+-+.|..++..+|+++|+ .||++ .+|..+ |. ..|||.|.+.++|+..+..++.
T Consensus 21 ~lfV~nLp~~~te~~L~~~F~-~~G~I--~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 83 (99)
T 4fxv_A 21 NLIVNYLPQNMTQDELRSLFS-SIGEV--ESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHH-TTSCE--EEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCE--EEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCC
Confidence 388999999999999999996 79975 456554 32 2699999999999998776654
No 116
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=92.76 E-value=0.32 Score=43.05 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=47.1
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+.+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++|+..|..++.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~-~~G~i--~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 66 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFG-SIGEI--ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 66 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHH-TTSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ceEEEcCCCCCCCHHHHHHHHH-hcCCe--EEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCC
Confidence 3589999999999999999996 79975 45565533 5899999999999999887665
No 117
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=92.72 E-value=0.4 Score=42.17 Aligned_cols=59 Identities=22% Similarity=0.301 Sum_probs=47.9
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcccc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGSLD 453 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~~~ 453 (573)
..+|+-+.|..++..+|+++|+ .||.+ .+|..+ | ...|||.|.+.++|+..+..++...
T Consensus 43 ~~l~V~nLp~~~~~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 108 (139)
T 1u6f_A 43 RNLMVNYIPTTVDEVQLRQLFE-RYGPI--ESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFN 108 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHH-HHSCE--EEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 4589999999999999999996 79975 456654 3 2379999999999999888766543
No 118
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=92.69 E-value=0.2 Score=40.26 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=45.1
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhh----CCC-----ceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVY----GPT-----SVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~f----g~~-----~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .| |.. .|.++... |...|||.|.+.++|+..+ .++.
T Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~-~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 7 RRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp GEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCC
Confidence 3589999999999999999997 56 621 23455543 5789999999999999887 5544
No 119
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.67 E-value=0.33 Score=40.48 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=44.5
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .|| |.+|..+-+ ..|||.|.+.+.++..| .++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~g---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g 77 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFK-DLS---IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDG 77 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTT-TSC---EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTT
T ss_pred CeEEEEeCCCCCCCHHHHHHHHH-hCC---ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCC
Confidence 35689999999999999998886 454 567777633 27999999999999987 4443
No 120
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=92.61 E-value=0.26 Score=40.43 Aligned_cols=58 Identities=12% Similarity=0.215 Sum_probs=46.1
Q ss_pred cceEEEeCCCCcccHHHHH----HHHHhhhCCCceeEEEEe----cCceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIR----ECISKVYGPTSVISVYHV----DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~----~~~~~~fg~~~v~~v~~i----ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+ +.|+ .||.+ .+|..+ ....|||.|.+.++++..+..++.
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~-~~G~i--~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g 73 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFS-RFGQI--LDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG 73 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHG-GGSCE--EEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH-hCCCE--EEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCC
Confidence 3568999999999999999 7775 68864 344444 246899999999999998877665
No 121
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=92.55 E-value=0.25 Score=40.34 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=45.6
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-----ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-----TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-----tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||.+.-..+..-.+ ..|||.|.+.++|+..+..++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 79 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND 79 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTT-TSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCC
Confidence 5689999999999999999986 788764222332222 4699999999999998876665
No 122
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=92.55 E-value=0.35 Score=44.29 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=49.3
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|+++|+ .||++.|.+|..+-| ..|||.|.+.++|+..|..++.
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~-~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng 121 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIR-SIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPG 121 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHH-HTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 4599999999999999999996 799655678887633 2799999999999998877665
No 123
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.54 E-value=0.25 Score=42.36 Aligned_cols=58 Identities=10% Similarity=0.208 Sum_probs=47.8
Q ss_pred cceEEEeCCCC-cccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPS-HLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~-~~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|. .++..||+++|+ .||.+ .+|.-+ |...|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~-~fG~V--~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 74 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVE-PFGVI--SNHLILNKINEAFIEMATTEDAQAAVDYYTT 74 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTG-GGSCE--EEEEECSSSSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHH-hcCCE--EEEEEEcCCCEEEEEECCHHHHHHHHHHHcC
Confidence 45688999999 999999999996 89975 455544 567899999999999998877664
No 124
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.42 E-value=0.32 Score=40.67 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=44.8
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC--------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE--------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd--------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .|| |.+|..+-+ ..|||.|.+.+.|+..| .++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G---i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g 78 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFR-GLN---ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE 78 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTT-TSC---EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGT
T ss_pred CCEEEEeCCCCcCCHHHHHHHHH-HCC---ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCC
Confidence 35689999999999999999886 677 456666522 27999999999999988 5554
No 125
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=92.26 E-value=0.29 Score=47.31 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=20.7
Q ss_pred CcccchhhhHHHHHHHHHHHHHH
Q 008236 305 GVKHEAGYDAFMTGCVFAQACSH 327 (573)
Q Consensus 305 ~~~HEAGyDAymTG~vF~kL~~~ 327 (573)
+..|.|-.||..|+.+|.+|...
T Consensus 191 ~~~H~Al~DA~~ta~l~~~l~~~ 213 (224)
T 2xri_A 191 GRPHSGIDDCKNIANIMKTLAYR 213 (224)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCcChHHHHHHHHHHHHHHHHc
Confidence 57899999999999999999764
No 126
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.20 E-value=0.27 Score=40.84 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=46.2
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+ | ...|||.|.+.++|+..+..++.
T Consensus 13 ~~l~V~nLp~~~t~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 76 (102)
T 2cqb_A 13 RVLYVGGLAEEVDDKVLHAAFI-PFGDI--TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 76 (102)
T ss_dssp SCEEEESCCSSCCHHHHHHHHT-TTSCC--CCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHhh-ccCCE--EEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 4589999999999999999996 68976 345553 3 34799999999999998876654
No 127
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=92.14 E-value=0.54 Score=43.90 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=48.4
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhccc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
...+|+-++|..++..+|+++|+ .||++ .+|..+-+ ..|||.|.+.++|+..+..++..
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~-~~G~I--~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~ 152 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFA-EFGTL--KKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV 152 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHH-HTSCC--SEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCC
Confidence 45699999999999999999997 69986 45666532 57999999999999988766653
No 128
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.05 E-value=0.42 Score=39.24 Aligned_cols=55 Identities=24% Similarity=0.388 Sum_probs=45.0
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-c--eEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-T--AVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-t--sa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|+++|+ .||.+ .+| .+|. + .|||.|.+.+.++..+. ++.
T Consensus 9 ~~l~V~nl~~~~t~~~l~~~F~-~~G~v--~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g 66 (94)
T 2e5g_A 9 RSVFVSGFPRGVDSAQLSEYFL-AFGPV--ASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQ 66 (94)
T ss_dssp CEEEEECCCTTCCHHHHHHHGG-GTSCE--EEE-EECSSSCCEEEEEESSHHHHHHHHT-CSC
T ss_pred CEEEEECCCCCCCHHHHHHHHH-hcCCe--EEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCC
Confidence 3589999999999999999996 78975 466 5554 3 79999999999999877 544
No 129
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=91.91 E-value=0.61 Score=41.68 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=49.1
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEec--CceEEEEecchhhHHHHHHHhccc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD--ETAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~id--dtsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+- ...|||.|.+.++++..+..++..
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~ 133 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFG-YYGPL--RSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 133 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHH-HHSCE--EEEEECSSSCSEEEEEESSHHHHHHHHHHHSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hhCCE--EEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 35689999999999999999997 79975 5666653 589999999999999988876663
No 130
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.91 E-value=0.56 Score=38.05 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=43.8
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCc-----eEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DET-----AVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddt-----sa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .|+ |.+|..+ |.+ .|||.|.+.++++..|. ++.
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~-~~~---i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g 71 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLA-PLK---PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNR 71 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHT-TSC---CSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCS
T ss_pred ccEEEEECCCCCCCHHHHHHHHh-hCC---ceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCC
Confidence 45689999999999999999986 453 3455554 333 79999999999999887 554
No 131
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=91.90 E-value=0.24 Score=41.41 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=44.9
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC--------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE--------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd--------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .|| |.+|..+-+ ..|||.|.+.++++..| .++.
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~-~~G---i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g 82 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFR-GLN---ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE 82 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSC-SSC---EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH-hcC---CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCC
Confidence 45689999999999999998886 577 567777643 38999999999999987 5554
No 132
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.85 E-value=0.41 Score=40.67 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=47.4
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c----CceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D----ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d----dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-|.|..++..+|++.|+ .||.+ .+|..+ | ...|||.|.+.++|+..+..++.
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~-~~G~i--~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g 91 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFG-QFGKI--LDVEIIFNERGSKGFGFVTFENSADADRAREKLHG 91 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGG-GTCCC--SCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCcCCHHHHHHHHH-hcCCE--EEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCC
Confidence 34589999999999999999996 79986 345554 3 46899999999999998876654
No 133
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.81 E-value=0.35 Score=42.28 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=49.6
Q ss_pred CcccccceEEEeCCCCc-ccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 008236 386 PKILFECIVIVWGFPSH-LKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 386 p~~~~~~~v~~~~fp~~-~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
+...+...+|+-+.|.. ++..+|+++|+ .||.+. +|.-+ +...|||.|.+.++|+..+..++.
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~-~fG~V~--~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 84 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAE-PYGKIK--NYILMRMKSQAFIEMETREDAMAMVDHCLK 84 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTT-TTSCCS--EEEEETTTTEEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHH-hcCCEE--EEEEecCCCEEEEEECCHHHHHHHHHHhcc
Confidence 33344667999999997 99999999986 899864 44444 568899999999999998876653
No 134
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=91.79 E-value=0.51 Score=41.20 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=47.2
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEec-------CceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD-------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~id-------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||++ .+|..+- ...|||.|.+.++|+..+..++.
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 127 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFI-PFGDI--TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 127 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHG-GGSCE--EEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE
T ss_pred CcEEEEEeCCCCCCHHHHHHHHH-hcCCE--EEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 45689999999999999999996 78975 4565543 35799999999999998776654
No 135
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.72 E-value=0.31 Score=41.44 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=46.1
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+ | ...|||.|.+.++|+..| .++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g 88 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFS-AVGKV--RDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTG 88 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHT-TTSCE--EEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCE--eEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCC
Confidence 45699999999999999999996 78865 566665 2 237999999999999988 5554
No 136
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.65 E-value=0.39 Score=41.66 Aligned_cols=60 Identities=12% Similarity=0.035 Sum_probs=44.7
Q ss_pred ccceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-----ceEEEEecchhhHHHHHHHhcc
Q 008236 390 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-----TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 390 ~~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-----tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
....+|+-+.|..++..+|+++|+ .||.+.-..+..-+. ..|||.|.+.++|+..|. ++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g 88 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFK-KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHK 88 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSC-SSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCC
Confidence 345699999999999999999986 788753211222222 369999999999999877 544
No 137
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.63 E-value=0.57 Score=38.50 Aligned_cols=60 Identities=12% Similarity=0.070 Sum_probs=45.5
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEec-----CceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD-----ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~id-----dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+.-..+..-. ...|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 79 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND 79 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTT-TSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 34589999999999999999996 78886421222212 24699999999999998876664
No 138
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=91.63 E-value=0.24 Score=38.58 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=42.6
Q ss_pred EEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHH
Q 008236 394 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDL 448 (573)
Q Consensus 394 v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~ 448 (573)
+|+-+.|..++..+|++.|+ .||++ .+|.++ | ...|||.|.+.+.++..+..
T Consensus 2 l~v~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFG-GFGEV--ESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHH-HHSCC--SEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 67889999999999999997 79986 455554 2 34899999999999998663
No 139
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=91.50 E-value=0.61 Score=43.37 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=51.7
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-------cCceEEEEecchhhHHHHHHHhcccccCCCCccc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-------DETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISV 461 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-------ddtsa~V~l~~~e~~~~~L~~~~~~~~~~~~~~~ 461 (573)
...||+-+.|..++..+|+++|+ .||++ .+|..+ ....|||.|.+.++|+..|..++...=.+..+.|
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFA-PFGPI--KSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHG-GGSCE--EEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-hCCCE--EEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 34699999999999999999996 78975 456664 2468999999999999998877664433333433
No 140
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=91.50 E-value=0.5 Score=40.59 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=46.3
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|+++|+ .||.+ .+|..+ |. ..|||.|.+.++|+..+..++.
T Consensus 7 ~~lfV~nL~~~~te~~L~~~F~-~~G~i--~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng 70 (110)
T 3s8s_A 7 KEVTFARLNDNVRETFLKDMCR-KYGEV--EEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHL 70 (110)
T ss_dssp CEEEEESCCTTCCHHHHHHHHT-TTSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCCHHHHHHHHH-hcCCe--eEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCC
Confidence 3589999999999999999996 79975 455554 33 2699999999999998877665
No 141
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.43 E-value=0.94 Score=38.29 Aligned_cols=60 Identities=12% Similarity=0.224 Sum_probs=47.4
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCc-e-eEEEEec---CceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTS-V-ISVYHVD---ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~-v-~~v~~id---dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+. + ..+.+.. ...|||.|.+.+.|+..+..++.
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 89 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFA-RFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNG 89 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTH-HHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 45689999999999999999996 788752 1 2445553 35899999999999998877665
No 142
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=91.34 E-value=0.58 Score=41.95 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=48.3
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhccc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+-| ..|||.|.+.+.++..|..++..
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~-~~G~v--~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 135 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFE-KYGRV--GDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHH-HHSCE--EEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 35689999999999999999996 79975 56666543 27999999999999988776653
No 143
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=91.30 E-value=0.55 Score=45.68 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=47.1
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|+++|+ .||...|.+|..+-| ..|||.|.+.+.|+..|..++.
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng 134 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK 134 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-HHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 3589999999999999999996 799434567777644 2699999999999887665554
No 144
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=91.28 E-value=0.34 Score=41.74 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=45.5
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+ .+|..+ | ...|||.|.+.+.++..| .++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g 99 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFS-SCGSI--NRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDE 99 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHH-TTSCE--EEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCC
Confidence 35699999999999999999997 78975 455554 3 348999999999999987 4443
No 145
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=91.23 E-value=0.39 Score=39.92 Aligned_cols=54 Identities=24% Similarity=0.325 Sum_probs=44.4
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLD 447 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~ 447 (573)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++++..+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFA-RYGSV--KEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCe--EEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 34589999999999999999996 79975 45666533 689999999999988765
No 146
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=91.19 E-value=0.42 Score=40.67 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=45.2
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHh
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLK 449 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~ 449 (573)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.+.++..|...
T Consensus 26 ~~lfV~nLp~~~te~~L~~~F~-~~G~i--~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 26 CKMFIGGLSWQTTQEGLREYFG-QFGEV--KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp CCEEEESCCTTCCHHHHHHHHT-TTSCE--EEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-ccCCe--EEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 3489999999999999999996 78975 56666533 38999999999999987654
No 147
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=91.13 E-value=0.42 Score=42.54 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=46.6
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 4 ~~l~v~nlp~~~~~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 67 (168)
T 1b7f_A 4 TNLIVNYLPQDMTDRELYALFR-AIGPI--NTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNG 67 (168)
T ss_dssp SEEEEECCCTTCCHHHHHHHHH-TTSCE--EEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-hcCCe--eEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCC
Confidence 4589999999999999999996 79975 45555432 3799999999999999886655
No 148
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.09 E-value=0.47 Score=40.40 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=45.3
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDL 448 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~ 448 (573)
...+|+-+.|..++..+|+++|+ .||.+ ..|..+-+ ..|||.|.+.+.|+..|..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYE-QWGKL--TDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHT-SSCCC--SEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCE--EEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 35689999999999999999996 79986 45566543 3899999999999998765
No 149
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=91.04 E-value=0.78 Score=42.34 Aligned_cols=24 Identities=21% Similarity=0.025 Sum_probs=21.4
Q ss_pred CcccchhhhHHHHHHHHHHHHHHh
Q 008236 305 GVKHEAGYDAFMTGCVFAQACSHL 328 (573)
Q Consensus 305 ~~~HEAGyDAymTG~vF~kL~~~l 328 (573)
+..|.|-.||+.|+.+|..+...+
T Consensus 154 ~~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 154 QGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcCcHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999998766
No 150
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=90.99 E-value=0.45 Score=45.60 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=49.4
Q ss_pred cceEEEeCCCC-cccHHHHHHHHHhhhCCCceeEEEEe-c-CceEEEEecchhhHHHHHHHhcccc
Q 008236 391 ECIVIVWGFPS-HLKAWDIRECISKVYGPTSVISVYHV-D-ETAVFVQFSRAEMVSKFLDLKGSLD 453 (573)
Q Consensus 391 ~~~v~~~~fp~-~~k~~dI~~~~~~~fg~~~v~~v~~i-d-dtsa~V~l~~~e~~~~~L~~~~~~~ 453 (573)
...+|+-+.|. .++..+|+++|+ .||.+ .+|..+ | .+.|||.|.+.++|+..+..++...
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~-~~G~i--~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~ 96 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFG-VYGDV--QRVKILFNKKENALVQMADGNQAQLAMSHLNGHK 96 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHH-HHTCE--EEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCB
T ss_pred CCEEEEeCCCcccCCHHHHHHHHH-hCCCe--EEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCe
Confidence 45689999999 999999999996 79984 566665 3 3689999999999999988766633
No 151
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=90.92 E-value=0.69 Score=38.91 Aligned_cols=58 Identities=10% Similarity=0.199 Sum_probs=46.1
Q ss_pred cceEEEeCCCCcc------cHHHHHHHHHhhhCCCceeEEEEec-----CceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHL------KAWDIRECISKVYGPTSVISVYHVD-----ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~------k~~dI~~~~~~~fg~~~v~~v~~id-----dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
.+.+|+-+.|..+ +..+|++.|+ .||++ .+|..+. ...|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~v--~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g 83 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKI--TNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG 83 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHG-GGSCE--EEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSS
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHh-cCCCE--EEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 4569999999988 6789999996 79975 4555553 25899999999999998776655
No 152
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.83 E-value=0.22 Score=42.64 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=45.6
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c---------CceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D---------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d---------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||++. +.++ | ...|||.|.+.++|+..|..+..
T Consensus 9 ~~lfVgnLp~~~te~~L~~~F~-~~G~i~---~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~ 74 (114)
T 2dnl_A 9 RKVFVGGLPPDIDEDEITASFR-RFGPLV---VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE 74 (114)
T ss_dssp CCEEEECCCTTCCHHHHHHHTT-TTCCCC---EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE
T ss_pred CEEEEcCCCCCCCHHHHHHHHH-hcCCEE---EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh
Confidence 3489999999999999999996 799874 3554 2 24799999999999998877643
No 153
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=90.81 E-value=0.48 Score=41.86 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=46.5
Q ss_pred eEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhccc
Q 008236 393 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 393 ~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
.+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++|+..+..++..
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~-~~G~i--~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 64 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQ-VGGPI--ANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGK 64 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHG-GGSCE--EEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcCCHHHHHHHHH-hcCCe--EEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCC
Confidence 378999999999999999996 79975 56666522 36999999999999998766653
No 154
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=90.73 E-value=0.48 Score=39.63 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=47.3
Q ss_pred cceEEEeCCCC------cccHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPS------HLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~------~~k~~dI~~~~~~~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
.+.||+-|.|. .+...+|++.|+ .||++ .+|..+ |. ..|||.|.+.++|+..+..++.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~-~~G~i--~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFS-KAGKV--VNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHH-TTSCE--EEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHH-hcCCE--eEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 45799999999 999999999997 79975 455554 33 4799999999999998876665
No 155
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=90.64 E-value=0.77 Score=41.97 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=45.6
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDL 448 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~ 448 (573)
...+|+-+.|..++..+|+++|+ .||++ .+|..+-+ ..|||.|.+.++|+..|..
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFE-QWGTL--TDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCE--EEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc
Confidence 45689999999999999999996 79985 45666532 3899999999999999865
No 156
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=90.53 E-value=0.39 Score=49.02 Aligned_cols=104 Identities=14% Similarity=0.209 Sum_probs=60.1
Q ss_pred hhhhccHHHHHHHHhc--CCCeEEechh------hhHH-HHHHHHh--cC-CCCCCHHHHHHHHHccCCCCcchhHHhhh
Q 008236 180 IKASIGFRHVIDLLSS--EKKLIVGHNC------FLDI-AHIYSKF--FG-PLPLTAEEFISSVNKYFPHIIDTKILLNS 247 (573)
Q Consensus 180 l~~~~Gf~~v~~~l~~--s~kpiVgHN~------~~Dl-~~l~~~F--~~-~LP~~~~eFk~~l~~~FP~I~DTK~La~~ 247 (573)
+..+.-|..|++.+.. .+.++||||. -+|+ .+|-+.| .| ++|. +|...+||.-++..
T Consensus 89 v~~ap~~~evl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~-----------~~~~~iDt~~l~~~ 157 (308)
T 3cg7_A 89 IDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPA-----------FFRQYINLYKIFTN 157 (308)
T ss_dssp HHTSCBHHHHHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCG-----------GGSEEEEHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCch-----------hhcceeeHHHHHHH
Confidence 4456667766665432 2234677877 7899 5776555 22 3332 22346799887653
Q ss_pred chHHHHhhcc----CCCChHHHHHhhhhhhccCCccccccCCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHH
Q 008236 248 NSILQQRMKK----SSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQ 323 (573)
Q Consensus 248 ~~~lk~~~~~----~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~~~HEAGyDAymTG~vF~k 323 (573)
. + ..... +..+|..+.+. + .++ ..+..|.|-.||..|+.+|.+
T Consensus 158 ~--~-~~~~~~~~~~~~~L~~l~~~----~-------------------gi~-------~~~~~HrAl~DA~ata~l~~~ 204 (308)
T 3cg7_A 158 E--M-DRMGPKELSATTNIGKMNEY----Y-------------------DLP-------TIGRAHDAMDDCLNIATILQR 204 (308)
T ss_dssp H--H-HHHCCCCCCCCSHHHHHHHH----T-------------------TCC-------CCSCTTCHHHHHHHHHHHHHH
T ss_pred H--h-ccccccccccCcCHHHHHHH----c-------------------CCC-------CCCCCcCHHHHHHHHHHHHHH
Confidence 2 1 11110 13456665322 1 111 224679999999999999999
Q ss_pred HHHH
Q 008236 324 ACSH 327 (573)
Q Consensus 324 L~~~ 327 (573)
|...
T Consensus 205 l~~~ 208 (308)
T 3cg7_A 205 MINM 208 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8764
No 157
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.52 E-value=0.25 Score=39.98 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=42.0
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEec--CceEEEEecchhhHHHH
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD--ETAVFVQFSRAEMVSKF 445 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~id--dtsa~V~l~~~e~~~~~ 445 (573)
..+|+-+.|..++..+|++.|+ .||++ .+|..+- ...|||.|.+.++|+.+
T Consensus 6 ~~l~V~nLp~~~te~~l~~~F~-~~G~i--~~v~i~~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 6 SGVFVGRCTGDMTEDELREFFS-QYGDV--MDVFIPKPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp CEEEEESCCSSSCHHHHHHHST-TTSCC--CEEECCSSCCSCCEEECSCHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-HcCCe--eEEEEecCCCCEEEEEECCHHHHHHH
Confidence 4589999999999999999996 78986 4555553 47899999999999753
No 158
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=90.50 E-value=0.84 Score=40.72 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=47.1
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|...+..++.
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~-~~G~i--~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFS-SFGQI--EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCeEEEcCCCCcCCHHHHHHHHH-hCCCE--EEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 45689999999999999999996 79985 45555432 3599999999999998877765
No 159
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=90.49 E-value=0.46 Score=38.43 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=43.6
Q ss_pred eEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEec-------CceEEEEecchhhHHHHHHHhcc
Q 008236 393 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD-------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 393 ~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~id-------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
.+|+-+.|..++..+|++.|+ .||++ .+|..+- ...|||.|.+.+ ++..+..++.
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g 64 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFS-QFGKV--FNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDN 64 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHH-HHTCC--SEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCS
T ss_pred EEEECCCCCCCCHHHHHHHHH-hcCCE--EEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCC
Confidence 378889999999999999997 79986 3455542 347999999999 8887666555
No 160
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=90.28 E-value=0.89 Score=40.54 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=46.1
Q ss_pred eEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEec---------CceEEEEecchhhHHHHHHHhcc
Q 008236 393 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD---------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 393 ~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~id---------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
.+|+-+.|..++..+|++.|+ .||++ .+|..+- ...|||.|.+.++|+..+..++.
T Consensus 5 ~l~V~nLp~~~te~~l~~~F~-~~G~i--~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 69 (175)
T 3nmr_A 5 KMFVGQVPRTWSEKDLRELFE-QYGAV--YEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHN 69 (175)
T ss_dssp EEEEESCCTTCCHHHHHHHHH-TTSCE--EEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hCCCE--EEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 489999999999999999996 79975 4555542 24799999999999999887665
No 161
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.15 E-value=1.2 Score=36.72 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=46.3
Q ss_pred ceEEEeCCCCcccHHHHH----HHHHhhhCCCceeEEEEe-c---CceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIR----ECISKVYGPTSVISVYHV-D---ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~----~~~~~~fg~~~v~~v~~i-d---dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|+ ++|+ .||.+ .+|..+ | ...|||.|.+.++|+..+..++.
T Consensus 10 ~~l~V~nL~~~~~~~~l~~~l~~~F~-~~G~v--~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g 74 (96)
T 2dgx_A 10 ADVQVSNIDYRLSRKELQQLLQEAFA-RHGKV--KSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHR 74 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHH-HHSCE--EEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhcc-ccCcE--EEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCC
Confidence 458999999999999999 8886 78875 456654 3 45799999999999998876665
No 162
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=90.09 E-value=0.85 Score=40.42 Aligned_cols=59 Identities=10% Similarity=0.206 Sum_probs=44.5
Q ss_pred cceEEEeCCCCcccHHHHH----HHHHhhhCCCceeEEEEe----cCceEEEEecchhhHHHHHHHhccc
Q 008236 391 ECIVIVWGFPSHLKAWDIR----ECISKVYGPTSVISVYHV----DETAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~----~~~~~~fg~~~v~~v~~i----ddtsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
...+|+-+.|..++..+++ ++|+ .||.+ .+|.-. ....|||.|.+.++|...+..++..
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~-~~G~I--~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~ 95 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALAS-SQGDI--LDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGY 95 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHH-HHSCE--EEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhc-cCCCe--EEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCC
Confidence 3568999999999998876 4665 78875 344332 1258999999999999988777663
No 163
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.08 E-value=0.43 Score=39.56 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=43.9
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe----cCceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV----DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i----ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+.+ ... ....|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~g~v~~---~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 75 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFE-KATFIKV---PQNQNGKSKGYAFIEFASFEDAKEALNSCNK 75 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCS-SCSEEEC---CBCSSSCBCSEEEEECSSHHHHHHHHHHTSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCEEEE---EECCCCCEeeEEEEEECCHHHHHHHHHHhCC
Confidence 45689999999999999998886 5775422 221 135899999999999998876665
No 164
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.00 E-value=0.78 Score=38.67 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=42.7
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCc-----eEEEEecchhhHHHHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DET-----AVFVQFSRAEMVSKFLD 447 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddt-----sa~V~l~~~e~~~~~L~ 447 (573)
...||+-+.|..++..||++.|+ .||.. +|..+ |.+ .|||.|.+.++|+..|.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~-~~G~~---~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~ 73 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFS-PLNPM---RVHIEIGPDGRVTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSC-SCCCS---EEEEEESSSSCEEEEEEEECSSSHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HcCce---EEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 45699999999999999998886 68854 44443 544 69999999999999874
No 165
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=89.88 E-value=0.54 Score=39.73 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=43.5
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCc-eeEEEEe-cC-----ceEEEEecchhhHHHHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTS-VISVYHV-DE-----TAVFVQFSRAEMVSKFLD 447 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~-v~~v~~i-dd-----tsa~V~l~~~e~~~~~L~ 447 (573)
...+|+-+.|..++..||++.|+ .||... |.+|..+ |. ..|||.|.+.++++..|.
T Consensus 11 ~~~l~V~nLp~~~te~~l~~~F~-~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 11 VFLIRAQGLPWSCTMEDVLNFFS-DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 73 (107)
T ss_dssp CCEEEEECCCSSCCSHHHHHHTT-TSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT
T ss_pred ccEEEEeCCCCCCCHHHHHHHHH-hcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 44689999999999999999986 677622 2344544 32 379999999999999877
No 166
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=89.81 E-value=0.32 Score=39.87 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=44.5
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEec---CceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD---ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~id---dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+.+ + ..+ ...|||.|.+.++|+..+..++.
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~-~~g~v~~--~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g 75 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFE-DALEIRL--V-SQDGKSKGIAYIEFKSEADAEKNLEEKQG 75 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHC-SEEEECC--E-EETTEEEEEEEEEESSHHHHHHHHHHTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHh-hCCcEEE--e-CCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 35689999999999999999986 5775433 2 222 24799999999999998887665
No 167
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=89.54 E-value=1 Score=44.08 Aligned_cols=59 Identities=17% Similarity=0.283 Sum_probs=49.4
Q ss_pred ccceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 008236 390 FECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 390 ~~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
....+|+-+.|..++..+|++.|+ .||.+. +|... +...|||.|.+.++|+..+..++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~--~v~i~~~kg~afV~f~~~~~A~~A~~~l~g 80 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFE-RYGEPS--EVFINRDRGFGFIRLESRTLAEIAKAELDG 80 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTG-GGCCCS--EEEEETTTTEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-hcCCEE--EEEEeCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 355799999999999999999996 799864 45544 688999999999999999886654
No 168
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.38 E-value=1.2 Score=38.21 Aligned_cols=60 Identities=10% Similarity=0.228 Sum_probs=46.1
Q ss_pred eEEEeCCCCcccHHHHHHHHHhhhCCCc--eeEEEEecCceEEEEecchhhHHHHHHHhcccccC
Q 008236 393 IVIVWGFPSHLKAWDIRECISKVYGPTS--VISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRN 455 (573)
Q Consensus 393 ~v~~~~fp~~~k~~dI~~~~~~~fg~~~--v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~~~~~ 455 (573)
.+|+-+.|..++..+|+..+...|++.. |.+| -...|||.|.+.|.|+.-++.++..+=-
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---tgG~AfV~F~~~esA~~A~~~l~G~~l~ 72 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---TGCSAILRFINQDSAERAQKRMENEDVF 72 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---CTTCEEEEESSHHHHHHHHHHHTTCCSS
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---ecCEEEEEECCHHHHHHHHHHhcCCccC
Confidence 4889999999999998765555555552 4444 4599999999999999988888774433
No 169
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=89.30 E-value=1.2 Score=41.90 Aligned_cols=24 Identities=13% Similarity=-0.100 Sum_probs=21.0
Q ss_pred CcccchhhhHHHHHHHHHHHHHHh
Q 008236 305 GVKHEAGYDAFMTGCVFAQACSHL 328 (573)
Q Consensus 305 ~~~HEAGyDAymTG~vF~kL~~~l 328 (573)
...|.|-.||..|+.+|..+...+
T Consensus 158 ~~~H~Al~Da~ata~ll~~~~~~~ 181 (194)
T 2gbz_A 158 SSAHTALSDVRDSIDELRHYRQFM 181 (194)
T ss_dssp CSCCSHHHHHHHHHHHHHHHHTTS
T ss_pred CCCcccHHHHHHHHHHHHHHHHHh
Confidence 457999999999999999987655
No 170
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=89.29 E-value=1.6 Score=38.55 Aligned_cols=58 Identities=14% Similarity=0.291 Sum_probs=46.4
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+++-+.|..++..+|++.|+ .||.+ .+|..+ |. ..|||.|.+.++|...+..++.
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~-~~G~i--~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFG-KYGSI--VQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHT-SSSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEeCCCCCCCHHHHHHhhh-cCCcE--EEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 34689999999999999999996 78875 344443 32 4799999999999998887766
No 171
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=89.28 E-value=1.1 Score=41.57 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=47.1
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhccc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+ | ...|||.|.+.++|...+..++..
T Consensus 126 ~~l~v~nlp~~~t~~~l~~~f~-~~G~v--~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 190 (216)
T 2qfj_A 126 NRIYVASVHQDLSDDDIKSVFE-AFGKI--KSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLF 190 (216)
T ss_dssp CEEEEECCCTTCCHHHHHHHHT-TSSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCcCCHHHHHHHHh-ccCCe--eEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCC
Confidence 4689999999999999999996 78864 455554 3 247999999999999998877653
No 172
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.07 E-value=0.77 Score=38.79 Aligned_cols=60 Identities=10% Similarity=0.132 Sum_probs=46.5
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCcee------EEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVI------SVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~------~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|+++|+ .||.+... .|..+ | ...|||.|.+.+.|+..|..++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFK-QCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHT-TTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCEEEEcCCCCCCCHHHHHHHHH-hcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 35689999999999999999996 78986410 13333 4 23899999999999998887665
No 173
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=88.98 E-value=1.2 Score=39.77 Aligned_cols=58 Identities=14% Similarity=0.304 Sum_probs=46.7
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+++-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++|+..+..++.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~-~~G~v--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLT-SFGPL--KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 158 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHH-TTSCE--EEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTT
T ss_pred CCEEEEEcCCCcCCHHHHHHHHH-hcCCc--eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 34589999999999999999997 78975 44555433 3699999999999998776655
No 174
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.89 E-value=0.77 Score=37.97 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=43.2
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhccc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
...+|+-+.|..++..+|+++|+ .|+ .|..+-+ ..|||.|.+.++|+..|..++..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~~-----~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2fc8_A 15 SKTLFVKGLSEDTTEETLKESFD-GSV-----RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 77 (102)
T ss_dssp CSSEEEECCCTTCCHHHHHHTST-TCS-----EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCccCHHHHHHHhc-CCe-----EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 35589999999999999997775 232 3444432 48999999999999998876653
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=88.71 E-value=1.4 Score=38.73 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=46.2
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+++-+.|..++..+|++.|+ .||++ .++..+ |. ..|||.|.+.++|...+..++.
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~-~~G~i--~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 152 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFS-QYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 152 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCcEEECCCCCcCCHHHHHHHHH-hcCCE--eEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC
Confidence 34589999999999999999996 78975 344443 32 4699999999999998877665
No 176
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=88.69 E-value=0.85 Score=42.08 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=48.0
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhC-CCceeEEEEe--cCceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYG-PTSVISVYHV--DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg-~~~v~~v~~i--ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+.+.|..++..+|++.|+ .|| .+ .+|..+ +...|||.|.+.++|...+..++.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~-~~G~~v--~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g 180 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFS-SNGGVV--KGFKFFQKDRKMALIQMGSVEEAVQALIDLHN 180 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHH-HTTSCC--CEEEESSTTSSCEEEECSSHHHHHHHHHHHTS
T ss_pred ccEEEEeCCCCCCCHHHHHHHHH-HcCCCc--eEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcC
Confidence 45689999999999999999996 788 54 345553 678999999999999998887765
No 177
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=88.52 E-value=1.1 Score=38.79 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=46.2
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhC-CCceeEEEEe---cCceEEEEecchhhHHHHHHHhcccc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYG-PTSVISVYHV---DETAVFVQFSRAEMVSKFLDLKGSLD 453 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg-~~~v~~v~~i---ddtsa~V~l~~~e~~~~~L~~~~~~~ 453 (573)
..+|+-+.|..++..+|++.|+ .|| .+. .+.-+ ....|||.|.+.++|+..+..++..+
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~-~~G~~v~--~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~ 91 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLAR-ENSLETT--FSSVNTRDFDGTGALEFPSEEILVEALERLNNIE 91 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHH-HHTCCCS--EEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEE
T ss_pred CEEEEECCCCCCCHHHHHHHHH-HhCCeeE--EEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCE
Confidence 4589999999999999999996 789 543 33332 25789999999999999877766533
No 178
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=88.50 E-value=1.4 Score=38.83 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=46.0
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+++-+.|..++..+|++.|+ .||.+ .++..+ | ...|||.|.+.++|...+..++.
T Consensus 87 ~~~l~v~nl~~~~t~~~l~~~f~-~~G~i--~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 151 (166)
T 3md3_A 87 TFNLFVGDLNVNVDDETLRNAFK-DFPSY--LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 151 (166)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHT-TSTTE--EEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred CceEEECCCCCCCCHHHHHHHHh-ccCCe--eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 34689999999999999999995 78875 344444 3 23699999999999998876655
No 179
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=88.35 E-value=0.85 Score=43.10 Aligned_cols=57 Identities=26% Similarity=0.422 Sum_probs=46.0
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe------cCceEEEEecchhhHHHHHHHhc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV------DETAVFVQFSRAEMVSKFLDLKG 450 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i------ddtsa~V~l~~~e~~~~~L~~~~ 450 (573)
...+|+-|+|..++..+|++.|+ .||++ .+|..+ ....|||.|.+.++|+..|...+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~-~~G~v--~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLE-DKGQV--LNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHT-TSCCE--EEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHh-cCCCE--EEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC
Confidence 35699999999999999999996 78985 455544 24689999999999999875543
No 180
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=88.04 E-value=0.95 Score=40.20 Aligned_cols=54 Identities=17% Similarity=0.348 Sum_probs=44.7
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHH
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDL 448 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~ 448 (573)
..+|+-+.|..++..+|++.|+ .||++ .+|..+-+ ..|||.|.+.++|+..|..
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFG-KYGTV--TDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHT-TTCCE--EEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-hCCCE--EEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 3589999999999999999996 78974 56666533 4899999999999998774
No 181
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.00 E-value=1.7 Score=35.74 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=43.6
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-++ .++..+|+++|+ .||.+ .+|... ....|||.|.+.++|+..+..++.
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~-~~G~i--~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g 71 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFS-PFGNI--IDLSMDPPRNCAFVTYEKMESADQAVAELNG 71 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHT-TTSCE--EEEEEETTTTEEEEEESSHHHHHHHHHHTTT
T ss_pred CCEEEEcCC--CCCHHHHHHHHh-hCCCE--EEEEecCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 345777775 789999999996 79975 344442 467999999999999998877665
No 182
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=87.99 E-value=0.96 Score=43.03 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=48.7
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-----ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-----TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-----tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+.+.|.+++..+|+++|+ .||.+.+.+|.-+.+ ..+||.|.+.++|...|..++.
T Consensus 124 ~~l~v~NLp~~~t~~~L~~~F~-~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng 187 (205)
T 3tyt_A 124 NVLHFFNAPLEVTEENFFEICD-ELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNH 187 (205)
T ss_dssp SEEEEEEECTTCCHHHHHHHHH-HHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTT
T ss_pred ceEEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 4688999999999999999996 799864345666554 4799999999999998887776
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=87.97 E-value=0.94 Score=43.33 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=47.9
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhC-CCceeEEEEe--cCceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYG-PTSVISVYHV--DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg-~~~v~~v~~i--ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|+++|+ .|| .+ .+|..+ +...|||.|.+.++|...+..++.
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~-~~G~~i--~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g 211 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFS-SNGGVV--KGFKFFQKDRKMALIQMGSVEEAVQALIDLHN 211 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHH-TTSCCE--EEEEECSSSTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEeCCCccCCHHHHHHHHH-HcCCCe--eEEEEEECCCcEEEEEECCHHHHHHHHHHHCC
Confidence 5689999999999999999996 788 53 456664 678999999999999998887765
No 184
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=87.90 E-value=0.85 Score=39.39 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=43.5
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCc-eeEEEEe-c-----CceEEEEecchhhHHHHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTS-VISVYHV-D-----ETAVFVQFSRAEMVSKFLD 447 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~-v~~v~~i-d-----dtsa~V~l~~~e~~~~~L~ 447 (573)
...+|+-+.|..++..||+++|+ .||... |.+|..+ | ...|||.|.+.++++..|.
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~-~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLS-DCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTT-TSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH-HcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 34589999999999999999996 688732 2344444 3 2379999999999998866
No 185
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.67 E-value=0.81 Score=40.40 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=44.3
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCc--eeEEEEecC------ceEEEEecchhhHHHHHHH
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTS--VISVYHVDE------TAVFVQFSRAEMVSKFLDL 448 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~--v~~v~~idd------tsa~V~l~~~e~~~~~L~~ 448 (573)
..||+-+.|...+..||++.|+ .||++. |.+|..+.| ..|||.|.+.++++..|..
T Consensus 24 ~~v~V~nLp~~~te~dl~~~F~-~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 24 VIVRMRGLPFTATAEEVVAFFG-QHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp CEEEECSCCTTCCHHHHHHHHH-TTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh
Confidence 4689999999999999999996 788752 345555532 3699999999999887653
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=87.54 E-value=1.3 Score=43.23 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=48.4
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC--ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE--TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd--tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+.+ ..|||.|.+.+++...+..++.
T Consensus 207 ~~~l~v~nl~~~~~~~~l~~~F~-~~G~i--~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g 266 (282)
T 3pgw_A 207 NHILFLTNLPEETNELMLSMLFN-QFPGF--KEVRLVPGRHDIAFVEFDNEVQAGAARDALQG 266 (282)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHH-hcCCe--EEEEEecCCCcEEEEEeCCHHHHHHHHHHcCC
Confidence 45689999999999999999996 78875 56666654 5899999999999998777665
No 187
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=87.39 E-value=0.72 Score=42.58 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=48.0
Q ss_pred ceEEEeCCCC-cccHHHHHHHHHhhhCCCceeEEEEec--CceEEEEecchhhHHHHHHHhcccc
Q 008236 392 CIVIVWGFPS-HLKAWDIRECISKVYGPTSVISVYHVD--ETAVFVQFSRAEMVSKFLDLKGSLD 453 (573)
Q Consensus 392 ~~v~~~~fp~-~~k~~dI~~~~~~~fg~~~v~~v~~id--dtsa~V~l~~~e~~~~~L~~~~~~~ 453 (573)
..+|+-+.|. .++..+|+++|+ .||.+ .+|..+- .+.|||.|.+.++|+..+..++...
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~-~~G~i--~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 65 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFG-VYGDV--QRVKILFNKKENALVQMADGNQAQLAMSHLNGHK 65 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHH-TTCCC--SEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHH-hcCCE--EEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCe
Confidence 3589999999 999999999996 79985 4555553 3689999999999999988766633
No 188
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.36 E-value=0.72 Score=40.50 Aligned_cols=57 Identities=9% Similarity=0.097 Sum_probs=45.2
Q ss_pred ceEEE--eCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIV--WGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~--~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+ -|.|..++..+|++.|+ .||.+ .+|.-+ +...|||.|.+.++|+..+..++.
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~-~fG~v--~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG 85 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLE-KCGLV--DALLMPPNKPYSFARYRTTEESKRAYVTLNG 85 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHH-HHSCE--EEEECCTTCSCEEEEESSHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCCCCHHHHHHHHH-hcCCe--EEEEEeCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 34777 67999999999999996 89965 444333 567999999999999998776665
No 189
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.29 E-value=1.5 Score=36.67 Aligned_cols=55 Identities=24% Similarity=0.217 Sum_probs=42.9
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeE-EEEe-cC-----ceEEEEecchhhHHHHHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVIS-VYHV-DE-----TAVFVQFSRAEMVSKFLDL 448 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~-v~~i-dd-----tsa~V~l~~~e~~~~~L~~ 448 (573)
...+|+-+.|..++..||++.|. .||.+ .. |..+ |+ ..|||.|.+.++++..|..
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~-~~G~v--~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFS-GLEIV--PNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTT-TCCEE--EEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCc--ceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 45689999999999999999986 67764 22 4332 32 3699999999999998765
No 190
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=87.04 E-value=0.79 Score=37.60 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=42.2
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEec--CceEEEEecchhhHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD--ETAVFVQFSRAEMVSK 444 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~id--dtsa~V~l~~~e~~~~ 444 (573)
.+.+|+-+.|..++..+|++.|+ .||++ .+|.-+- ...|||.|.+.++|+.
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~-~~G~i--~~v~i~~~srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFC-QYGEV--VDVFIPKPFRAFAFVTFADDKVAQS 63 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHT-TTSCE--EEEECCSSCCSEEEEEESCHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHh-ccCCE--EEEEEeeCCCCEEEEEECCHHHHHH
Confidence 45689999999999999999996 78975 4555543 5789999999999985
No 191
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=86.90 E-value=1.3 Score=39.26 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=44.0
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLD 447 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~ 447 (573)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|...|.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i--~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFS-QWGTI--IDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHH-TTSCC--SEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEECCCCCCCCHHHHHHHHH-hCccE--EEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 34589999999999999999997 79975 45555432 389999999999998876
No 192
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=86.75 E-value=1.8 Score=40.86 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=47.9
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhccc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
..+|+-+.|..++..+|+++|+ .||++ .+|..+ |. ..|||.|.+.++++..|..++..
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~-~~G~I--~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~ 80 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFS-PAGPI--LSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 80 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-hhCCE--EEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhh
Confidence 4689999999999999999996 79975 567765 32 37999999999999988876653
No 193
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=86.62 E-value=1.1 Score=48.05 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=48.1
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c------CceEEEEecchhhHHHHHHHhcccc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D------ETAVFVQFSRAEMVSKFLDLKGSLD 453 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~~~ 453 (573)
..||+-++|..++..+|.++|+ .||.+ ..|..+ | ...|||.|.+.++|...|..++...
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~-~~G~I--~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFE-VYGPI--KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HcCCe--eEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 4699999999999999999997 69986 455544 3 3579999999999999988776543
No 194
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=86.61 E-value=1.9 Score=39.31 Aligned_cols=58 Identities=14% Similarity=0.304 Sum_probs=47.2
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++++..+..++.
T Consensus 114 ~~~l~v~nl~~~~~~~~l~~~f~-~~G~v--~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 178 (198)
T 2yh0_A 114 AHKLFIGGLPNYLNDDQVKELLT-SFGPL--KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 178 (198)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHH-TBSCE--EEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HcCCc--cEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCC
Confidence 45689999999999999999996 78975 45555432 4799999999999998876665
No 195
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=86.59 E-value=1.6 Score=38.53 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=46.4
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCce------eEEEEe----cCceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSV------ISVYHV----DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v------~~v~~i----ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||.+.- .+|... ....|||.|.+.++|...+..++.
T Consensus 46 ~~l~V~nLp~~~te~~L~~~F~-~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng 114 (143)
T 3egn_A 46 CRIYVKNLAKHVQEKDLKYIFG-RYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANG 114 (143)
T ss_dssp SEEEEEEECTTCCHHHHHHHHG-GGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 4589999999999999999996 7998642 123332 235899999999999998887665
No 196
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=86.48 E-value=1.2 Score=36.84 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=43.3
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEec------CceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~id------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|+++|+ .||.+.. ..-.| ...|||.|.+.++++..|. ++.
T Consensus 18 ~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~--~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g 79 (101)
T 1fj7_A 18 FNLFIGNLNPNKSVAELKVAIS-ELFAKND--LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTG 79 (101)
T ss_dssp EEEEEECCCTTSCHHHHHHHHH-HHHHHHT--CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGG
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HhCCcce--EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCC
Confidence 4589999999999999999997 6775422 11122 4579999999999999987 655
No 197
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.06 E-value=1.2 Score=39.57 Aligned_cols=55 Identities=13% Similarity=0.005 Sum_probs=43.4
Q ss_pred ceEEEeCCCCc-ccHHHHHHHHHhhhCCCceeEEEE-ecCceEEEEecc-hhhHHHHHHHh
Q 008236 392 CIVIVWGFPSH-LKAWDIRECISKVYGPTSVISVYH-VDETAVFVQFSR-AEMVSKFLDLK 449 (573)
Q Consensus 392 ~~v~~~~fp~~-~k~~dI~~~~~~~fg~~~v~~v~~-iddtsa~V~l~~-~e~~~~~L~~~ 449 (573)
.++++-|.+.. .+..+|++.|+ .||.+ .+|.. .|++.+||-|.+ .+.|.+++..+
T Consensus 19 ~il~v~~l~~~~~sredLke~F~-~~G~V--~~Vd~~~g~~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFS-NHGEI--KWIDFVRGAKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTC-SSCCE--EEEECCTTCSEEEEEESSCHHHHHHHHHHT
T ss_pred eEEEEecCCCCcCCHHHHHHHHH-hcCCE--EEEEEecCCCEEEEEECCChHHHHHHHHHh
Confidence 46888889999 99999999996 58853 33333 288899999999 78888887764
No 198
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=85.80 E-value=2.4 Score=39.64 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=43.8
Q ss_pred eEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecCc---eEEEEecchhhHHHHHHHhcc
Q 008236 393 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDET---AVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 393 ~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddt---sa~V~l~~~e~~~~~L~~~~~ 451 (573)
.+|+-+.|..++..+|+++|+ .||.+ .+|.-+++. .|||.|.+.++++.-+..++.
T Consensus 48 ~l~VgNL~~~vted~L~~~Fs-~fG~V--~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG 106 (164)
T 1sjr_A 48 RIIVENLFYPVTLDVLHQIFS-KFGTV--LKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 106 (164)
T ss_dssp EEEECSCCSCCCHHHHHHHHH-HHSCE--EEEEEEESSSCEEEEEEESCHHHHHHHHHHSTT
T ss_pred EEEEeCcCCCCCHHHHHHHHH-hcCCE--EEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 367778899999999999997 79985 445544443 699999999999987665554
No 199
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.67 E-value=1.5 Score=37.40 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=43.4
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c-----CceEEEEecchhhHHHHHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D-----ETAVFVQFSRAEMVSKFLDL 448 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d-----dtsa~V~l~~~e~~~~~L~~ 448 (573)
...+|+-+.|..++..+|++.|+ .||.+. .+|..+ | ...|||.|.+.++|+..|..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~g~v~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 15 KVCAHITNIPFSITKMDVLQFLE-GIPVDE-NAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTT-TSCCCS-TTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG
T ss_pred ccEEEEeCcCCcCCHHHHHHHHH-hCCCcC-CeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 34689999999999999999996 678752 124444 2 35799999999999887554
No 200
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=85.65 E-value=1.1 Score=36.32 Aligned_cols=57 Identities=12% Similarity=0.257 Sum_probs=44.3
Q ss_pred eEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEE-ecCceEEEEecchhhHHHHHHHhcccc
Q 008236 393 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYH-VDETAVFVQFSRAEMVSKFLDLKGSLD 453 (573)
Q Consensus 393 ~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~-iddtsa~V~l~~~e~~~~~L~~~~~~~ 453 (573)
.+|+-+.|..++..+|++.|+ .| . |.++.. -....|||.|.+.++++..+..++..+
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~-~~-~--v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~ 64 (88)
T 1wg1_A 7 GILVKNLPQDSNCQEVHDLLK-DY-D--LKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYS 64 (88)
T ss_dssp CEEEESCCSSCCHHHHHHHTC-SS-C--CCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHh-hC-C--eEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 489999999999999998886 45 3 334433 345689999999999999888776543
No 201
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=84.62 E-value=3.2 Score=36.08 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=44.2
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhccc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
...+|+-++ .++..+|+++|+ .||.+. +|... ....|||.|.+.++|+..+..++..
T Consensus 39 ~~~lfVgnl--~~te~~L~~~F~-~~G~I~--~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~ 96 (121)
T 2bz2_A 39 GNTLYVYGE--DMTPTLLRGAFS-PFGNII--DLSMDPPRNCAFVTYEKMESADQAVAELNGT 96 (121)
T ss_dssp CCEEEEECS--SCCHHHHHHHHS-TTCCCS--CEEEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCEEEEcCC--CCCHHHHHHHHH-ccCCEE--EEEEeCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 345777775 589999999996 799864 34443 5789999999999999988776653
No 202
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=84.37 E-value=1.8 Score=38.86 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=45.0
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCc-eeEEEEe-cC-----ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTS-VISVYHV-DE-----TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~-v~~v~~i-dd-----tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...||+-+.|..++..||++.|+ .||... |.+|..+ |. ..|||.|.+.++|+..|. ++.
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~-~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g 109 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDR 109 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTT-TCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC
Confidence 45699999999999999999996 688721 2334443 32 379999999999999877 443
No 203
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=84.37 E-value=2.6 Score=37.49 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=45.0
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhh----CCC-----ceeEEEE-ecCceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVY----GPT-----SVISVYH-VDETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~f----g~~-----~v~~v~~-iddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .| |.. .|.++.- -+...|||.|.+.++|+..| .++.
T Consensus 5 ~~l~V~nLp~~~t~~~l~~~F~-~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~ 72 (172)
T 2g4b_A 5 RRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDG 72 (172)
T ss_dssp GEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTT
T ss_pred cEEEEcCCCcccCHHHHHHHHH-HHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCC
Confidence 4589999999999999999997 67 521 3344433 36789999999999999987 4444
No 204
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=83.64 E-value=1.5 Score=38.34 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=45.2
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
+.+|+-+.|..++..+|+++|+ .||.+....|..+ |. ..|||.|.+. ++...+..++.
T Consensus 24 ~~lfV~nL~~~~te~~L~~~F~-~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g 88 (131)
T 2m2b_A 24 DTIILRNLNPHSTMDSILGALA-PYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQA 88 (131)
T ss_dssp CEEEECSCCTTCCSHHHHHHHG-GGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcC
Confidence 4589999999999999999996 7998732114443 33 4799999999 88887777665
No 205
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=83.53 E-value=2.6 Score=45.76 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=54.4
Q ss_pred HHHHHHhcCCCeEEech-hhhHHHHHHHHhcCC-CCCCHHHHHHHHHccCCCCcchhHHhhhchHHHH-hh-------cc
Q 008236 188 HVIDLLSSEKKLIVGHN-CFLDIAHIYSKFFGP-LPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQ-RM-------KK 257 (573)
Q Consensus 188 ~v~~~l~~s~kpiVgHN-~~~Dl~~l~~~F~~~-LP~~~~eFk~~l~~~FP~I~DTK~La~~~~~lk~-~~-------~~ 257 (573)
.|.+.|...+.++|||| .-+|+.+|-+.|..- +|.-...| .. .-..+||--++...-.+.. .+ ..
T Consensus 87 ~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w----~~-~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~ 161 (482)
T 2qxf_A 87 RIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW----QH-DNSRWDLLDVMRACYALRPEGINWPENDDGL 161 (482)
T ss_dssp HHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGT----GG-GCEEEEHHHHHHHHHHHCCTTSCCCBCTTSS
T ss_pred HHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCcccccc----cc-CCceeeHHHHHHHHHHhCcccccCcccccCC
Confidence 34444444678999999 689999887776211 12100000 00 0234587666554221110 00 11
Q ss_pred CCCChHHHHHhhhhhhccCCccccccCCCCceeeeeeccccccCCCCCcccchhhhHHHHHHHHHHHHHH
Q 008236 258 SSTSLSKAFSVLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSH 327 (573)
Q Consensus 258 ~~tsL~~l~~~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~~~~~HEAGyDAymTG~vF~kL~~~ 327 (573)
.+.+|..+.. .+ ++ ..+..|.|-.||++|+.+|..|...
T Consensus 162 ~s~kL~~L~~----~~-------------------Gi--------~~~~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 162 PSFRLEHLTK----AN-------------------GI--------EHSNAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp BCCCHHHHHH----HT-------------------TC--------CCC---CTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHH----Hc-------------------CC--------CCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2345555422 11 01 1135699999999999999998754
No 206
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=83.40 E-value=2.6 Score=38.32 Aligned_cols=54 Identities=19% Similarity=0.288 Sum_probs=43.4
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-------ceEEEEecchhhHHHHHHH
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-------TAVFVQFSRAEMVSKFLDL 448 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-------tsa~V~l~~~e~~~~~L~~ 448 (573)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+-+ ..|||.|.+.++|...|..
T Consensus 105 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 105 KKIFVGGIKEDTEEHHLRDYFE-QYGKI--EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp SEEEEECCTTTCCHHHHHHHHT-TTSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred ceEEEeCCCCCCCHHHHHHHHh-cCCCe--EEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 5689999999999999999996 78975 44554422 2599999999999987754
No 207
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=83.38 E-value=3.1 Score=36.84 Aligned_cols=55 Identities=7% Similarity=-0.022 Sum_probs=42.5
Q ss_pred EEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecCc--eEEEEecchhhHHHHHHHhcc
Q 008236 394 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDET--AVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 394 v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddt--sa~V~l~~~e~~~~~L~~~~~ 451 (573)
+|+-+.|...+..+|+++|+ .||.+ .+|.-++.+ .|||.|.+.++|...+..++.
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs-~yG~V--~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG 84 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCN-PVGKV--QRIVIFKRNGIQAMVEFESVLCAQKAKAALNG 84 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHT-TTSCE--EEEEEEESSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEcCcCCCCCHHHHHHHHH-hcCCE--EEEEEEeCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 55677888999999999996 79975 344444443 499999999999887766655
No 208
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=83.16 E-value=2.5 Score=40.11 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=47.8
Q ss_pred ceEEEeCCC-CcccHHHHHHHHHhhhCCCceeEEEEec--CceEEEEecchhhHHHHHHHhccc
Q 008236 392 CIVIVWGFP-SHLKAWDIRECISKVYGPTSVISVYHVD--ETAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 392 ~~v~~~~fp-~~~k~~dI~~~~~~~fg~~~v~~v~~id--dtsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
.++|+-+.| ..++..+|+++|+ .||.+ .+|.-+- ...|||.|.+.++|+..+..++..
T Consensus 5 ~~l~V~nL~~~~~~~~~L~~~F~-~~G~v--~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~ 65 (205)
T 3tyt_A 5 PVLMVYGLDQSKMNCDRVFNVFC-LYGNV--EKVKFMKSKPGAAMVEMADGYAVDRAITHLNNN 65 (205)
T ss_dssp SEEEEECCCTTTCCHHHHHHHHT-TTSCE--EEEEECTTSTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CEEEEeCCCcccCCHHHHHHHHH-hcCCe--EEEEEecCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 358899999 7999999999996 79975 5666554 378999999999999988877653
No 209
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=83.11 E-value=3.5 Score=40.18 Aligned_cols=59 Identities=12% Similarity=0.240 Sum_probs=45.6
Q ss_pred cceEEEeCCCCcccHHHHH----HHHHhhhCCCceeEEEEec----CceEEEEecchhhHHHHHHHhccc
Q 008236 391 ECIVIVWGFPSHLKAWDIR----ECISKVYGPTSVISVYHVD----ETAVFVQFSRAEMVSKFLDLKGSL 452 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~----~~~~~~fg~~~v~~v~~id----dtsa~V~l~~~e~~~~~L~~~~~~ 452 (573)
...+|+-+.|..++..+|+ ++|+ .||.+ .+|..+. ...|||.|.+.++++..+..++..
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~-~~G~i--~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFS-QFGQI--LDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGF 75 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh-ccCCe--EEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 4569999999999999977 6664 67764 4555432 358999999999999998777663
No 210
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.20 E-value=2.9 Score=35.88 Aligned_cols=53 Identities=23% Similarity=0.229 Sum_probs=42.0
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c-----CceEEEEecchhhHHHHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D-----ETAVFVQFSRAEMVSKFLD 447 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d-----dtsa~V~l~~~e~~~~~L~ 447 (573)
...||+-+.|..++..||++.|+ .|+ |.+|..+ | ...|||.|.+.++++..|.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~-~~~---v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~ 74 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFH-GLR---VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK 74 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTT-TSC---CCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhc-cCC---eeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 45699999999999999998886 343 4566665 3 2479999999999999873
No 211
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=81.45 E-value=3.5 Score=38.80 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=45.4
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c----CceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D----ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d----dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|+++|+ .||.+ .++.-+ | ...|||.|.+.++|+..+..++.
T Consensus 104 ~~l~v~nl~~~~t~~~l~~~F~-~~G~i--~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 104 GNIFIKNLDKSIDNKALYDTFS-AFGNI--LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp TEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccceECCcccccHHHHHHHHHh-hcCCe--EEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 3589999999999999999996 79975 344443 3 23699999999999998776654
No 212
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=80.70 E-value=4.2 Score=39.60 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=46.3
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-dd------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||++ .++..+ |. ..|||.|.+.+++...+..++.
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~-~~G~i--~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~ 159 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVR-PFGSL--ERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 159 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEcCCCCcCCHHHHHHHHH-hcCCe--eEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 3589999999999999999996 79984 455555 32 2699999999999999876665
No 213
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=80.60 E-value=4.4 Score=36.27 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=44.0
Q ss_pred eEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecCc---eEEEEecchhhHHHHHHHhcc
Q 008236 393 IVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDET---AVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 393 ~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddt---sa~V~l~~~e~~~~~L~~~~~ 451 (573)
.+++-+.+...+..+|+++|+ .||.+ .+|.-+++. .|||.|.+.++|+.-+..++.
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs-~yG~V--~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG 88 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFS-KFGTV--LKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 88 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHT-TSSCE--EEEEEEEETTEEEEEEEESCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCHHHHHHHHh-CcCCE--EEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 367777888899999999996 79985 455555543 499999999999988776665
No 214
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=80.27 E-value=3 Score=40.83 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=45.0
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEec-----CceEEEEecchhhHHHHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVD-----ETAVFVQFSRAEMVSKFLD 447 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~id-----dtsa~V~l~~~e~~~~~L~ 447 (573)
...||+-+.|..++..+|++.|+ .||++ .+|..+- ...|||.|.+.++|+..|.
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~ 99 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFK-HCGPI--IHVDVADSLKKNFRFARIEFARYDGALAAIT 99 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHG-GGSCE--EEEEEEECTTSSSEEEEEEESSHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe--EEEEEEECCCCCcEEEEEEECCHHHHHHHHH
Confidence 45699999999999999999996 79975 4555553 5789999999999999984
No 215
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=80.22 E-value=2.3 Score=41.73 Aligned_cols=57 Identities=12% Similarity=0.210 Sum_probs=45.6
Q ss_pred cceEEEeCCCCc-ccHHHHHHHHHhhhCCCceeEEEEecCc--------eEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSH-LKAWDIRECISKVYGPTSVISVYHVDET--------AVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~-~k~~dI~~~~~~~fg~~~v~~v~~iddt--------sa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+.+.|.. ++..+|++.|+ .||.+ .+|..+-+. .|||.|.+.++|...| .++.
T Consensus 210 ~~~l~v~nlp~~~~t~~~l~~~F~-~~G~v--~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g 275 (292)
T 2ghp_A 210 GREIMIRNLSTELLDENLLRESFE-GFGSI--EKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNR 275 (292)
T ss_dssp TTEEEEEEECTTTCCHHHHHHHHG-GGSCE--EEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTT
T ss_pred CceEEEECCCcccCCHHHHHHHHh-ccCCe--eEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcC
Confidence 456899999999 99999999997 79975 456555443 4999999999999886 5554
No 216
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=78.23 E-value=4.9 Score=35.52 Aligned_cols=54 Identities=24% Similarity=0.320 Sum_probs=42.6
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCcee--EEEEe-c-----CceEEEEecchhhHHHHHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVI--SVYHV-D-----ETAVFVQFSRAEMVSKFLDL 448 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~--~v~~i-d-----dtsa~V~l~~~e~~~~~L~~ 448 (573)
...||+-+.|..++..||++.|+ .|+ |+ +|..+ | ...|||.|.+.++|+..|..
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~-~~~---i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFS-GLE---IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTT-TSC---EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHh-cCC---ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 45699999999999999998886 443 44 55655 2 35799999999999988764
No 217
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=78.23 E-value=4.6 Score=39.36 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=46.3
Q ss_pred cceEEEeCCCCcc-cHHHHHHHHHhhhCCCceeEEEEec------CceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHL-KAWDIRECISKVYGPTSVISVYHVD------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~-k~~dI~~~~~~~fg~~~v~~v~~id------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..+ +..+|++.|+ .||.+ .+|..+- ...|||.|.+.++|...+..++.
T Consensus 184 ~~~l~v~nlp~~~~~~~~l~~~f~-~~G~i--~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 184 SRCLCVDRLPPGFNDVDALCRALS-AVHSP--TFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CSEEEEECCCTTCCCHHHHHHHTC-SSSCC--SEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred ccEEEEecCCcccCCHHHHHHHhh-CCCCe--EEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 4568999999997 7899999986 78875 3455443 36799999999999998876665
No 218
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=78.21 E-value=4.6 Score=39.27 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=46.1
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-c-----CceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-D-----ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-d-----dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||.+ .+|..+ | ...|||.|.+.++|...|..++.
T Consensus 97 ~~l~v~nl~~~~t~~~l~~~F~-~~G~i--~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 97 AALTVKNLSPVVSNELLEQAFS-QFGPV--EKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp SEEEEESCCTTCCHHHHHHHHG-GGSCE--EEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CcccccCCCCCCCHHHHHHHHH-hcCCe--EEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 3589999999999999999996 79975 445443 4 34699999999999999888743
No 219
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=77.96 E-value=4.4 Score=39.99 Aligned_cols=57 Identities=19% Similarity=0.118 Sum_probs=46.4
Q ss_pred ceEEEeCCCCcc---------cHHHHHHHHHhhhCCCceeEEEEe-cCceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHL---------KAWDIRECISKVYGPTSVISVYHV-DETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~---------k~~dI~~~~~~~fg~~~v~~v~~i-ddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..+ ...+|+..|+ .||++ .+|.-+ +...|||.|.+.++|+..+..++.
T Consensus 135 rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~-~fG~I--~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g 201 (240)
T 3u1l_A 135 KTLYVGGIDGALNSKHLKPAQIESRIRFVFS-RLGDI--DRIRYVESKNCGFVKFKYQANAEFAKEAMSN 201 (240)
T ss_dssp CEEEEECTTGGGTTCCCCHHHHHHHHHHHHH-TTSCE--EEEEEEGGGTEEEEEESSHHHHHHHHHHHTT
T ss_pred ceeecCCCChhhhcccccccCcHHHHHHHHH-ccCCE--EEEEEECCCCEEEEEeCCHHHHHHHHHHhCC
Confidence 358888999987 6889999996 79986 445444 789999999999999998777765
No 220
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=77.25 E-value=5.9 Score=35.95 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=43.9
Q ss_pred eEEEeCCCCcccHHHHHHHHHhhh----CCC-----ceeEEEE-ecCceEEEEecchhhHHHHHHHhcc
Q 008236 393 IVIVWGFPSHLKAWDIRECISKVY----GPT-----SVISVYH-VDETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 393 ~v~~~~fp~~~k~~dI~~~~~~~f----g~~-----~v~~v~~-iddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
.+|+-+.|..++..+|++.|+ .| |-. .|.++.. -+...|||.|.+.++|+..| .++.
T Consensus 6 ~l~V~nLp~~~te~~l~~~F~-~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g 72 (198)
T 2yh0_A 6 RLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDG 72 (198)
T ss_dssp EEEEESCCTTCCHHHHHHHHH-HHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTT
T ss_pred EEEEcCCCCCCCHHHHHHHHH-HHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcC
Confidence 489999999999999999997 66 421 2334433 36789999999999999987 4443
No 221
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=77.14 E-value=2.1 Score=38.36 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=44.0
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecC-----ceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDE-----TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~idd-----tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|+ .||.+ ..++. ..|||.|.+.++|...|..++.
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~-~~g~v-----~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFE-DALEI-----RLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 158 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCT-TCSEE-----EEECSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCeE-----EEecCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 45689999999999999998886 46643 33332 5799999999999998887665
No 222
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=76.45 E-value=5 Score=33.78 Aligned_cols=56 Identities=11% Similarity=0.204 Sum_probs=45.9
Q ss_pred EEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 008236 394 VIVWGFPSHLKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 394 v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
+|+-+.+..++-.+|+.+|+ .||++.-+.+. .+...|||.+.+.+.|....+.++.
T Consensus 10 L~VgNL~~~~te~~L~~lF~-q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~ 65 (89)
T 2wbr_A 10 LLLKNLTAQIDGPTLRTLCM-QHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNN 65 (89)
T ss_dssp EEEECCCTTCCCHHHHHHHH-HHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEeCCCccCCHHHHHHHHH-hhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcC
Confidence 56778899999999999997 79997443332 3899999999999999988777765
No 223
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.24 E-value=3.5 Score=35.02 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=31.2
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCeEEEEeccCCCCceeEEEEec
Q 008236 112 ISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIE 156 (573)
Q Consensus 112 l~L~~~~s~QrrLI~q~lr~~fp~lv~v~~~~~~~~~~~ivv~~~ 156 (573)
+.|++-++++|++||.+++. +++.+.+. ++....+.+||+..
T Consensus 32 v~L~PM~~~eRriIH~~l~~--~gl~S~S~-Geep~~R~VvI~~~ 73 (94)
T 2cpm_A 32 KKFQPMNKIERSILHDVVEV--AGLTSFSF-GEDDDCRYVMIFKK 73 (94)
T ss_dssp EECCCCCSSHHHHHHHHHHH--HTCEEEEE-CSSSSCCEEEEECS
T ss_pred eEeCCCCHHHHHHHHHHHHH--CCCEEEEe-cCCCCceEEEEEeC
Confidence 56788889999999999988 78887765 44332266777743
No 224
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=75.36 E-value=0.72 Score=39.33 Aligned_cols=59 Identities=12% Similarity=0.141 Sum_probs=44.1
Q ss_pred ceEEEeCCCCcccHHHHHHHHHhhhCCCceeE------EEEe-c------CceEEEEecchhhHHHHHHHhcc
Q 008236 392 CIVIVWGFPSHLKAWDIRECISKVYGPTSVIS------VYHV-D------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 392 ~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~------v~~i-d------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|+-+.|..++..+|++.|+ .||.+.... |..+ | ...|||.|.+.++|+..+..++.
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 8 NTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 4588899999999999999996 788763200 3333 3 24799999999999887765554
No 225
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=71.69 E-value=13 Score=33.11 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=42.9
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCC---ceeEE-EEecCceEEEEecchhhHHHHHHHhcc
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPT---SVISV-YHVDETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~---~v~~v-~~iddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...+|+-+.|..++..+|++.|.+ ||.. .+.+. .......|||.|.+.++|+..|. ++.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~-~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g 75 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISE-LFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTG 75 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHH-HHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGG
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCC
Confidence 356899999999999999998874 4432 12111 11245799999999999999984 544
No 226
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=69.62 E-value=3.7 Score=36.87 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=41.6
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhhCCCceeEEEEe-cC-----ceEEEEecchhhHHHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVYGPTSVISVYHV-DE-----TAVFVQFSRAEMVSKFL 446 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i-dd-----tsa~V~l~~~e~~~~~L 446 (573)
...||+-+.|..++..||++.|+ .||.. +|..+ |. ..|||.|.+.++++..|
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~-~~Gi~---~v~i~~d~~g~srGfaFV~F~~~e~A~~Al 103 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFS-PLNPV---RVHIEIGPDGRVTGEADVEFATHEEAVAAM 103 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHC-SCCCS---EEECCCSSSSCSSCCCEEECSHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCe---EEEEEECCCCCCceEEEEEeCCHHHHHHHH
Confidence 34589999999999999999986 67843 45554 32 37999999999999876
No 227
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.19 E-value=8 Score=33.01 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 008236 406 WDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 406 ~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
.++.+.|+ .||. |+.|+.+.|+ +||.|.+.+.|...+. ++.
T Consensus 39 ~~L~~~F~-~~G~--Vilvr~v~d~-~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 39 TELMQTLG-SYGT--IVLVRINQGQ-MLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp HHHHHHHH-HHSC--CSEEEEETTE-EEEECSCSHHHHHHHH-GGG
T ss_pred HHHHHHHH-HCCC--EEEEEEecCc-EEEEEcChHHHHHHHh-cCC
Confidence 34777776 6884 4678888777 9999999999988877 554
No 228
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.60 E-value=10 Score=31.94 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=35.4
Q ss_pred CcccHHHHHHHHHhhhCCCceeEEEEe--cCceEEEEecchhhHHHHHHH
Q 008236 401 SHLKAWDIRECISKVYGPTSVISVYHV--DETAVFVQFSRAEMVSKFLDL 448 (573)
Q Consensus 401 ~~~k~~dI~~~~~~~fg~~~v~~v~~i--ddtsa~V~l~~~e~~~~~L~~ 448 (573)
..++..+|+++|+ .||.+ .+|.-+ ....|||.|.+.++|+..+..
T Consensus 27 ~~~te~~L~~~F~-~~G~V--~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 27 GGYSKDVLLRLLQ-KYGEV--LNLVLSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp CSCCHHHHHHHHH-TTSCE--EEEEEESSSSSEEEEEESCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH-hcCCE--EEEEEccCCCCEEEEEECCHHHHHHHHHh
Confidence 4568899999996 79975 455554 456899999999999988765
No 229
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=62.78 E-value=15 Score=30.94 Aligned_cols=58 Identities=9% Similarity=0.079 Sum_probs=47.6
Q ss_pred EEEeCCCCcccHHHHHHHHHhhhCC--CceeEEEEecCceEEEEecchhhHHHHHHHhcc
Q 008236 394 VIVWGFPSHLKAWDIRECISKVYGP--TSVISVYHVDETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 394 v~~~~fp~~~k~~dI~~~~~~~fg~--~~v~~v~~iddtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
+....+|+..+-.++.+.+...|+. ...+.+.|+||.--+|.+++.+..+..|.+.+.
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~ 76 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYEL 76 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHc
Confidence 5566678899999999888887774 355689999999999999999998887776554
No 230
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.08 E-value=38 Score=28.27 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhCCCceeEEEEec---CceEEEEecchhhHHHHHHHhcc
Q 008236 405 AWDIRECISKVYGPTSVISVYHVD---ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 405 ~~dI~~~~~~~fg~~~v~~v~~id---dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..+|++.|+ .||.+ .+|.-.| ...|||.|.+.++|+..+..++.
T Consensus 40 e~~l~~~f~-~~G~v--~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 40 REDLRVECS-KFGQI--RKLLLFDRHPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp HHHHHHHGG-GTSCC--SEEEEETTCTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred HHHHHHHHH-ccCCE--eEEEEecCCCCEEEEEEECCHHHHHHHHHHcCC
Confidence 358888886 78976 3452234 36899999999999998776654
No 231
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=57.41 E-value=12 Score=38.91 Aligned_cols=58 Identities=9% Similarity=0.117 Sum_probs=44.9
Q ss_pred eEEE--eCCCCcccHHHHHHHHHhhhCCCceeEEEEe--cCceEEEEecchhhHHHHHHHhccccc
Q 008236 393 IVIV--WGFPSHLKAWDIRECISKVYGPTSVISVYHV--DETAVFVQFSRAEMVSKFLDLKGSLDR 454 (573)
Q Consensus 393 ~v~~--~~fp~~~k~~dI~~~~~~~fg~~~v~~v~~i--ddtsa~V~l~~~e~~~~~L~~~~~~~~ 454 (573)
.+|+ .|.+..++..+|++.|+ .||.+ .+| +| +..-|||.|.+.++|+..++.++.-+-
T Consensus 20 ~l~VgN~gl~~~~te~~L~~~F~-~~G~V--~~v-~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 20 SLVVANGGLGNGVSRNQLLPVLE-KCGLV--DAL-LMPPNKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp EEEEETCSGGGTCCHHHHHHHHH-TTSCE--EEE-ECCTTCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred EEEEEcCCCCCCCCHHHHHHHHH-hcCCe--EEE-EEeCCCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 3555 34678899999999997 78975 333 44 778999999999999998888776433
No 232
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=53.70 E-value=7 Score=36.89 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=26.4
Q ss_pred hhhhccHHHHHHHHhc--------CCCeEEechhhhHHHHHHHHh
Q 008236 180 IKASIGFRHVIDLLSS--------EKKLIVGHNCFLDIAHIYSKF 216 (573)
Q Consensus 180 l~~~~Gf~~v~~~l~~--------s~kpiVgHN~~~Dl~~l~~~F 216 (573)
+.++..|..+++.+.+ .+.|+||||.-+|+.+|-+.|
T Consensus 79 l~~~p~~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~ 123 (186)
T 3tr8_A 79 KNSSVDEVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYM 123 (186)
T ss_dssp HTCCCCHHHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHC
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHH
Confidence 3445566666554432 466999999999999998764
No 233
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.82 E-value=19 Score=30.44 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhCCCceeEEEEecCceEEEEecchhhHHHHHH
Q 008236 406 WDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLD 447 (573)
Q Consensus 406 ~dI~~~~~~~fg~~~v~~v~~iddtsa~V~l~~~e~~~~~L~ 447 (573)
.++.+.|+ .||. |+.|+.+-|. +||.|.+.+.|...+.
T Consensus 30 ~~L~~~F~-~~G~--Vi~vr~~~d~-~fVtF~d~~sAlaAi~ 67 (91)
T 2dnr_A 30 DELLQQFA-SFGE--VILIRFVEDK-MWVTFLEGSSALNVLS 67 (91)
T ss_dssp HHHHHHHH-TTCC--EEEEEECSSS-EEEEESSHHHHHHGGG
T ss_pred HHHHHHHH-hCCC--eEEEEEecCC-EEEEECChHHHHHHHh
Confidence 34556665 5673 5677777766 8999999999877654
No 234
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=48.92 E-value=22 Score=31.60 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHHHHHhhhhccCCCCCCCcCCCCCcchhhhHHHhhccccccccCCCCHHHHHHHHHHHHHhCCCeEEEE
Q 008236 61 PDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFETIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLR 140 (573)
Q Consensus 61 ~D~~F~e~v~~~I~eWl~~~l~~~~~~~~~~~~~~~~~~~~q~~~~~~~p~l~L~~~~s~QrrLI~q~lr~~fp~lv~v~ 140 (573)
-|..|+-++-..|.+++... . .+.+.+++.|+|||.|+|++-. |=++.+-
T Consensus 28 rdR~~il~lE~~i~~Fi~d~----~-----------------------~~~~ef~pmnSy~RllvHrvAe--~ygL~h~- 77 (124)
T 1whr_A 28 RDRMMLLKLEQEILEFINDN----N-----------------------NQFKKFPQMTSYHRMLLHRVAA--YFGMDHN- 77 (124)
T ss_dssp TTHHHHHHHHHHHHHHHHCS----S-----------------------CCEEECCCCCHHHHHHHHHHHH--HHTCCEE-
T ss_pred HHHHHHHHHHHHHHHHHhCC----C-----------------------ccceECCCCCHHHHHHHHHHHH--HhCcCcc-
Confidence 35667777777888877632 1 1235678889999999999744 3344442
Q ss_pred eccCCCCceeEEEEec
Q 008236 141 VSGENSCSQNVIVYIE 156 (573)
Q Consensus 141 ~~~~~~~~~~ivv~~~ 156 (573)
+ +. ..+.++|++.
T Consensus 78 ~-d~--~~r~VvV~Kt 90 (124)
T 1whr_A 78 V-DQ--TGKAVIINKT 90 (124)
T ss_dssp E-CS--SCSSEEEECC
T ss_pred c-cC--CCCEEEEEeC
Confidence 2 22 2355666643
No 235
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=48.91 E-value=27 Score=38.70 Aligned_cols=107 Identities=18% Similarity=0.111 Sum_probs=60.0
Q ss_pred HHHHHhcCCCeEEechhhhHHHHHHHHhcCCCCCCHHHHHHHHHccCCC-CcchhHHhhhchHHHHhhccCCCChHHHHH
Q 008236 189 VIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPH-IIDTKILLNSNSILQQRMKKSSTSLSKAFS 267 (573)
Q Consensus 189 v~~~l~~s~kpiVgHN~~~Dl~~l~~~F~~~LP~~~~eFk~~l~~~FP~-I~DTK~La~~~~~lk~~~~~~~tsL~~l~~ 267 (573)
+.+.|....+++|+||.-+|+..|.+ + |- -++. ++||..++....+- ....+|..+-.
T Consensus 82 L~~~L~d~~i~kV~hnak~D~~~L~~-~-Gi--------------~l~~~~~DT~laayLL~p~-----~~~~~L~~La~ 140 (605)
T 2kfn_A 82 LKPLLEDEKALKVGQNLKYDRGILAN-Y-GI--------------ELRGIAFDTMLESYILNSV-----AGRHDMDSLAE 140 (605)
T ss_dssp HHHHHTCTTSCEEESSHHHHHHHHHT-T-TC--------------CCCCEEEEHHHHHHHHCTT-----SSCCSHHHHHH
T ss_pred HHHHHcCCCCeEEEECcHHHHHHHHH-C-CC--------------CCCCccccHHHHHHHhCCC-----CCCCCHHHHHH
Confidence 44556677789999999999998875 1 21 1333 78999887532210 12456777644
Q ss_pred hhhhhhccCCccccccCCCCceeeeeecccc-ccCCC----CCcccchhhhHHHHHHHHHHHHHHhC
Q 008236 268 VLCPQIALGSKSTHLALQPSVKVEVEVDDIR-SSNWN----SGVKHEAGYDAFMTGCVFAQACSHLG 329 (573)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~-s~~~~----~~~~HEAGyDAymTG~vF~kL~~~lg 329 (573)
.+.. . +.+..+--..... ...+. ....|-|+.||..|..+|.+|...|.
T Consensus 141 ~~Lg---~----------~~i~~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~ 194 (605)
T 2kfn_A 141 RWLK---H----------KTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQ 194 (605)
T ss_dssp HHSC---C----------CCCCHHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcC---C----------CcccHHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211 0 0000000000000 00000 12357799999999999999988774
No 236
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.33 E-value=73 Score=27.49 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=44.2
Q ss_pred cceEEEeCCCCcccHHHHHHHHHhhh--CCCceeEEEEecCceEEEEecchhhHHHHHHH
Q 008236 391 ECIVIVWGFPSHLKAWDIRECISKVY--GPTSVISVYHVDETAVFVQFSRAEMVSKFLDL 448 (573)
Q Consensus 391 ~~~v~~~~fp~~~k~~dI~~~~~~~f--g~~~v~~v~~iddtsa~V~l~~~e~~~~~L~~ 448 (573)
...|.+.|+|+......+.-.|.+.- |..-|.+|..+. .+|+|.|.+.+.++.+|.-
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-TEEEEEESSHHHHHHHHTC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-CcEEEEEcChHHHHHHhcC
Confidence 34588999999988777766776532 444566777766 9999999999999998765
No 237
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=44.54 E-value=64 Score=34.28 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=62.3
Q ss_pred HHHHHhcCCCeEEechhhhHHHHHHHHhcCCCCCCHHHHHHHHHccCCCCcchhHHhhhchHHHHhhccCCCChHHHHHh
Q 008236 189 VIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 268 (573)
Q Consensus 189 v~~~l~~s~kpiVgHN~~~Dl~~l~~~F~~~LP~~~~eFk~~l~~~FP~I~DTK~La~~~~~lk~~~~~~~tsL~~l~~~ 268 (573)
+.+.|.+...+-||||+-.|+-.|.+.|.-. | ..++||..++.... ....+|..+.+.
T Consensus 174 L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~-~--------------~~~fDT~lAa~lL~-------~~~~gL~~Lv~~ 231 (428)
T 3saf_A 174 LNESLTDPAIVKVFHGADSDIEWLQKDFGLY-V--------------VNMFDTHQAARLLN-------LGRHSLDHLLKL 231 (428)
T ss_dssp GHHHHTCTTSEEEESSCHHHHHHHHHHHCCC-C--------------SSEEEHHHHHHHTT-------CSCCSHHHHHHH
T ss_pred HHHHHcCCCceEEEeehHHHHHHHHHHcCCC-c--------------CceeechhHHHHhC-------CCCCCHHHHHHH
Confidence 3455677788899999999998877665211 1 23679988765322 224678877554
Q ss_pred hhhhhccCCccccccCCCCceeeeeeccccccCCC-----CCcccchhhhHHHHHHHHHHHHHHhC
Q 008236 269 LCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN-----SGVKHEAGYDAFMTGCVFAQACSHLG 329 (573)
Q Consensus 269 l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~-----~~~~HEAGyDAymTG~vF~kL~~~lg 329 (573)
+... ...+. ...+.+. ....+-|+-||+.+-.++-.|...|.
T Consensus 232 ~Lg~---~l~K~----------------~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~ 278 (428)
T 3saf_A 232 YCNV---DSNKQ----------------YQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMW 278 (428)
T ss_dssp HHCC---CCCCT----------------TTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HcCC---CCCcc----------------ccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 00010 0011111 23457899999999999999988873
No 238
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=43.53 E-value=54 Score=33.79 Aligned_cols=102 Identities=15% Similarity=0.045 Sum_probs=62.2
Q ss_pred HHHHHHhcCCCeEEechhhhHHHHHHHHhcCCCCCCHHHHHHHHHccCCCCcchhHHhhhchHHHHhhccCCCChHHHHH
Q 008236 188 HVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFS 267 (573)
Q Consensus 188 ~v~~~l~~s~kpiVgHN~~~Dl~~l~~~F~~~LP~~~~eFk~~l~~~FP~I~DTK~La~~~~~lk~~~~~~~tsL~~l~~ 267 (573)
.+.+.|.+...+.||||+-.|+-.|.+.|. -. ...+|||...+...++ ....+|+.+.+
T Consensus 65 ~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~G-i~--------------~~~~fDt~lAa~lL~~------~~~~~L~~L~~ 123 (375)
T 1yt3_A 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFG-EL--------------PQPLIDTQILAAFCGR------PMSWGFASMVE 123 (375)
T ss_dssp HHHHHHHCTTSEEEESSCHHHHHHHHHHHS-SC--------------CSSEEEHHHHHHHTTC------CTTCCHHHHHH
T ss_pred HHHHHHcCCCceEEEeeHHHHHHHHHHHcC-CC--------------CCcEEEcHHHHHHcCC------CCChhHHHHHH
Confidence 345566777888999999999999886542 11 1246899887654321 12567777754
Q ss_pred hhhhhhccCCccccccCCCCceeeeeeccccccCCC-----CCcccchhhhHHHHHHHHHHHHHHhC
Q 008236 268 VLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN-----SGVKHEAGYDAFMTGCVFAQACSHLG 329 (573)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~-----~~~~HEAGyDAymTG~vF~kL~~~lg 329 (573)
.+... ...++ ...+.+. ....+-|+.||+.+-.++-.|...|.
T Consensus 124 ~~l~~---~l~K~----------------~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~ 171 (375)
T 1yt3_A 124 EYSGV---TLDKS----------------ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 (375)
T ss_dssp HHHCC---CCCCT----------------TTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHcCC---CCCCC----------------cccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33210 00010 0001111 13456699999999999999988873
No 239
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=40.71 E-value=59 Score=29.39 Aligned_cols=42 Identities=14% Similarity=0.392 Sum_probs=33.1
Q ss_pred EEEeCC----CCcccHHHHHHHHHhhhCCCceeEEEEe-cC------ceEEEEecc
Q 008236 394 VIVWGF----PSHLKAWDIRECISKVYGPTSVISVYHV-DE------TAVFVQFSR 438 (573)
Q Consensus 394 v~~~~f----p~~~k~~dI~~~~~~~fg~~~v~~v~~i-dd------tsa~V~l~~ 438 (573)
+|++++ |..+.-.+|+++|+ .||.+. ++.-+ |. .=+||.+.+
T Consensus 5 I~VgnL~~~~~~~tte~~Lk~~Fs-~fGeV~--~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 5 IVVYPAQDSTTTNIQDISIKNYFK-KYGEIS--HFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp EEEEESSSSCCCCCCHHHHHHHHH-TTSCCS--EEEEEECTTTCCEEEEEEEECC-
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHH-hcCCeE--EEEEEecCCCCceeeEEEEEECC
Confidence 789999 99999999999997 899864 44443 43 348999985
No 240
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=39.85 E-value=52 Score=27.42 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhCCCceeEEEEecC------ceEEEEecchhhHHHHHHHhcc
Q 008236 406 WDIRECISKVYGPTSVISVYHVDE------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 406 ~dI~~~~~~~fg~~~v~~v~~idd------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
.||+..|+..||++ .+|.-+.+ ..|||.|.+.++|+..+..++.
T Consensus 41 edl~~~f~~~~G~V--~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng 90 (104)
T 1jmt_A 41 EEVFTEMEEKYGEV--EEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 90 (104)
T ss_dssp HHHHHHHHHHTCCE--EEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHHhhccCCce--EEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCC
Confidence 34444552378975 45555433 5899999999999987766654
No 241
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=39.26 E-value=64 Score=33.90 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=62.0
Q ss_pred HHHHHhcCCCeEEechhhhHHHHHHHHhcCCCCCCHHHHHHHHHccCCCCcchhHHhhhchHHHHhhccCCCChHHHHHh
Q 008236 189 VIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSV 268 (573)
Q Consensus 189 v~~~l~~s~kpiVgHN~~~Dl~~l~~~F~~~LP~~~~eFk~~l~~~FP~I~DTK~La~~~~~lk~~~~~~~tsL~~l~~~ 268 (573)
+.+.|....++.||||+-.|+..|++.|.- ....+|||...+... +....+|+.+.+.
T Consensus 151 L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi---------------~~~~~fDt~lAa~LL-------~~~~~~L~~L~~~ 208 (410)
T 2hbj_A 151 LNEVFTNPSIVKVFHGAFMDIIWLQRDLGL---------------YVVGLFDTYHASKAI-------GLPRHSLAYLLEN 208 (410)
T ss_dssp GHHHHTCTTSEEEESSCHHHHHHHHHHHCC---------------CCSSEEEHHHHHHHH-------TCSCCSHHHHHHH
T ss_pred HHHHHcCCCceEEEEehHHHHHHHHHHcCC---------------CcCCEEEcHHHHHHh-------CCCccCHHHHHHH
Confidence 445566778889999999999999876621 112378998776432 2224677776543
Q ss_pred hhhhhccCCccccccCCCCceeeeeeccccccCCC-----CCcccchhhhHHHHHHHHHHHHHHhC
Q 008236 269 LCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN-----SGVKHEAGYDAFMTGCVFAQACSHLG 329 (573)
Q Consensus 269 l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~-----~~~~HEAGyDAymTG~vF~kL~~~lg 329 (573)
+... ...++ ...+.+. ....+-|+.||+.+-.++-.|...|.
T Consensus 209 ~lg~---~l~K~----------------~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~ 255 (410)
T 2hbj_A 209 FANF---KTSKK----------------YQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLI 255 (410)
T ss_dssp HSCC---CCCCT----------------TTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HcCC---CCCcc----------------ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3210 00110 0001111 13556799999999999999988873
No 242
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=37.70 E-value=44 Score=27.98 Aligned_cols=44 Identities=23% Similarity=0.195 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhhCCCceeEEEEec---------CceEEEEecchhhHHHHHHHhcc
Q 008236 405 AWDIRECISKVYGPTSVISVYHVD---------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 405 ~~dI~~~~~~~fg~~~v~~v~~id---------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..||++.|+ .||++ .+|.-.. ...+||.|.+.++|+..+..++.
T Consensus 29 ~~dl~~~f~-k~G~V--~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 29 VEDVRDECS-KYGLV--KSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp HHHHHHHHH-TTSCE--EEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-ccCCE--EEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 357887776 68875 4554432 25799999999999988776665
No 243
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=35.44 E-value=64 Score=26.98 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=33.1
Q ss_pred cHHHHHHHHHhhhCCCceeEEEEe-c-------CceEEEEecchhhHHHHHHHhcc
Q 008236 404 KAWDIRECISKVYGPTSVISVYHV-D-------ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 404 k~~dI~~~~~~~fg~~~v~~v~~i-d-------dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
...||++.|+ .||.+ .+|.-+ | ...+||.|.+.++|...+..++.
T Consensus 26 ~~~dl~~~f~-~~G~V--~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG 78 (105)
T 2pe8_A 26 LEVETKEECE-KYGKV--GKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG 78 (105)
T ss_dssp CHHHHHHHGG-GGSCE--EEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-hcCCE--EEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC
Confidence 4678988886 79975 455443 2 24799999999999987666655
No 244
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=29.04 E-value=55 Score=31.92 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=31.5
Q ss_pred ccccCCCCHHHHHHHHHHHHHhCCCeEEEEeccCCCCceeEEEEecc
Q 008236 111 AISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIES 157 (573)
Q Consensus 111 ~l~L~~~~s~QrrLI~q~lr~~fp~lv~v~~~~~~~~~~~ivv~~~~ 157 (573)
...|++-|++.||+||..|. .+|++.+.+. ++ +-.+.+||+-..
T Consensus 167 ~v~L~PM~~~ERriIH~al~-~~~~V~T~Se-Ge-ep~R~VVI~~~~ 210 (225)
T 3gku_A 167 SVSLEPMNPYERRIIHAALQ-NDKYVVTRSD-GE-EPFRHVIISLKR 210 (225)
T ss_dssp CEECCCCCHHHHHHHHHHTT-TCSSEEEEEE-SS-TTSCEEEEEECC
T ss_pred EEEccCCCHHHHHHHHHHHc-cCCCcEEEEe-ec-CCCeEEEEEEcC
Confidence 35788999999999999997 4678777654 43 335666665443
No 245
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=28.93 E-value=51 Score=31.38 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=62.9
Q ss_pred HHHHHHhcCCCeEEechhhhHHHHHHHHhcCCCCCCHHHHHHHHHccCCCCcchhHHhhhchHHHHhhccCCCChHHHHH
Q 008236 188 HVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFS 267 (573)
Q Consensus 188 ~v~~~l~~s~kpiVgHN~~~Dl~~l~~~F~~~LP~~~~eFk~~l~~~FP~I~DTK~La~~~~~lk~~~~~~~tsL~~l~~ 267 (573)
.+.+.|...+..-|||.+-.|+-.|.+.| |-. ...++||..++... + +.-.....+|+.+.+
T Consensus 99 ~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~-g~~--------------~~~~~Dl~~la~~~--l-g~~~~~~~gL~~Lv~ 160 (206)
T 1vk0_A 99 DLYRFFASKFVTFVGVQIEEDLDLLRENH-GLV--------------IRNAINVGKLAAEA--R-GTLVLEFLGTRELAH 160 (206)
T ss_dssp HHHHHHTCSSSEEEESSCHHHHHHHHHHH-CCC--------------CSSEEEHHHHHHHH--H-TCGGGGGCCHHHHHH
T ss_pred HHHHHhcCCCceEEEeccHHHHHHHHHhc-CCC--------------cCCeeeHHHHHHHH--c-CCCCCCCccHHHHHH
Confidence 35567778888899999999999997765 222 23588998776431 1 100012567887765
Q ss_pred hhhhhhccCCccccccCCCCceeeeeeccccccCC----CCCcccchhhhHHHHHHHHHHHHH
Q 008236 268 VLCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNW----NSGVKHEAGYDAFMTGCVFAQACS 326 (573)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~----~~~~~HEAGyDAymTG~vF~kL~~ 326 (573)
.+... .. ++ ....+++| ...+.+-|.-|||..-.+|-+|..
T Consensus 161 ~~lg~---~l-K~--------------k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 161 RVLWS---DL-GQ--------------LDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHCC---CC-HH--------------HHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCC---cC-CC--------------CCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44221 00 00 00011222 235688899999999999998864
No 246
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=28.80 E-value=77 Score=27.26 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhCCCceeEEEEe-cC----------ceEEEEecchhhHHHHHHHhcc
Q 008236 405 AWDIRECISKVYGPTSVISVYHV-DE----------TAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 405 ~~dI~~~~~~~fg~~~v~~v~~i-dd----------tsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..||++.|+ .||++ .+|.-+ |. ..+||.|.+.+.|+..+..++.
T Consensus 39 eedl~eef~-k~G~V--~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG 93 (118)
T 3ue2_A 39 EGEVTEECG-KFGAV--NRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG 93 (118)
T ss_dssp HHHHHHHHT-TTSCE--EEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHh-ccCCE--eEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC
Confidence 467877775 68875 344333 21 3599999999999887666654
No 247
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=27.87 E-value=78 Score=27.09 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhCCCceeEEEEec---CceEEEEecchhhHHHHHHHhcc
Q 008236 405 AWDIRECISKVYGPTSVISVYHVD---ETAVFVQFSRAEMVSKFLDLKGS 451 (573)
Q Consensus 405 ~~dI~~~~~~~fg~~~v~~v~~id---dtsa~V~l~~~e~~~~~L~~~~~ 451 (573)
..||++.|+ .||.+ .+|.-.. ...+||.|.+.++|+..+..++.
T Consensus 31 ~edl~~~f~-kfG~V--~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG 77 (114)
T 3s6e_A 31 KDDVIEECN-KHGGV--IHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHG 77 (114)
T ss_dssp HHHHHHHHT-TTTCC--SEEEECTTCTTCCEEEECSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHh-ccCCE--EEEEEecCCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 346666664 68875 3443332 26899999999999887666654
No 248
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=27.18 E-value=1.2e+02 Score=25.13 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEeccCCCCceeEEEEecc
Q 008236 115 NGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIES 157 (573)
Q Consensus 115 ~~~~s~QrrLI~q~lr~~fp~lv~v~~~~~~~~~~~ivv~~~~ 157 (573)
+.+++.||++||++-++ =.|.+.+. ..|..++++|++..
T Consensus 40 ~sLs~~eR~~IH~lA~~--~GL~h~S~--G~G~~R~l~V~k~~ 78 (86)
T 1msz_A 40 PSLNSHDRLRVHQIAEE--HGLRHDSS--GEGKRRFITVSKRA 78 (86)
T ss_dssp TTCCSHHHHHHHHHHHH--TTEEEEEE--CSSSCCEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHH--cCCCccee--eCCCCeEEEEEEeC
Confidence 35788999999998776 45666554 34556778887654
No 249
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=26.70 E-value=2.4e+02 Score=25.81 Aligned_cols=101 Identities=17% Similarity=0.103 Sum_probs=57.1
Q ss_pred HHHHhcCCCeEEechhhhHHHHHHHHhcCCCCCCHHHHHHHHHccCCCCcc-hhHHhhhchHHHHhhccCCCChHHHHHh
Q 008236 190 IDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIID-TKILLNSNSILQQRMKKSSTSLSKAFSV 268 (573)
Q Consensus 190 ~~~l~~s~kpiVgHN~~~Dl~~l~~~F~~~LP~~~~eFk~~l~~~FP~I~D-TK~La~~~~~lk~~~~~~~tsL~~l~~~ 268 (573)
.+.|.....+.||||+-.|+..|.+.|.- ....++| |...+....+ ....+|+.+.+.
T Consensus 89 ~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi---------------~~~~~fDlt~lAayll~~------~~~~~L~~L~~~ 147 (208)
T 2e6m_A 89 KMLLENKSIKKAGVGIEGDQWKLLRDFDV---------------KLESFVELTDVANEKLKC------AETWSLNGLVKH 147 (208)
T ss_dssp HHHHTCTTSEEEESSHHHHHHHHHHHHCC---------------CCCSEEEHHHHHHHHTTC------CCCCCHHHHHHH
T ss_pred HHHhcCCCceEEEEeeHHHHHHHHHHCCC---------------CCCCEEEHHHHHHHHccC------CCChhHHHHHHH
Confidence 34456667889999999999888765521 1224789 6554322111 135677776543
Q ss_pred hhhhhccCCccccccCCCCceeeeeeccccccCCC-----CCcccchhhhHHHHHHHHHHHHHHh
Q 008236 269 LCPQIALGSKSTHLALQPSVKVEVEVDDIRSSNWN-----SGVKHEAGYDAFMTGCVFAQACSHL 328 (573)
Q Consensus 269 l~~~l~~~~~~~~~~~~p~v~i~v~~~~~~s~~~~-----~~~~HEAGyDAymTG~vF~kL~~~l 328 (573)
+... ...++ -. ...+.|. ....+-|+.||+.+-.++-.|...+
T Consensus 148 ~l~~---~~~K~-------------k~-~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L 195 (208)
T 2e6m_A 148 VLGK---QLLKD-------------KS-IRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLG 195 (208)
T ss_dssp HHSC---BCCCC-------------HH-HHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HcCC---CcCCC-------------CC-eeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2110 00000 00 0011111 1245669999999999999987766
Done!