BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008237
(573 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U6Z|A Chain A, Structure Of An E. Coli Exopolyphosphatase: Insight Into
The Processive Hydrolysis Of Polyphosphate And Its
Regulation
pdb|1U6Z|B Chain B, Structure Of An E. Coli Exopolyphosphatase: Insight Into
The Processive Hydrolysis Of Polyphosphate And Its
Regulation
Length = 513
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 114/480 (23%), Positives = 216/480 (45%), Gaps = 49/480 (10%)
Query: 11 PQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLXXXXXXXXXXXXXXVE 70
PQ FA++D+G++SF ++I R +G I LKQ V L L +
Sbjct: 10 PQE-FAAVDLGSNSFHMVIARVV-DGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLN 67
Query: 71 SLLMFRDIIQSHNISRDHXXXXXXXXXXXXENKDEFVECVREKVGFEVDVLTGEQEAKFV 130
L +F + +Q S N +F++ + + + +++++G +EA+ +
Sbjct: 68 CLSLFAERLQG--FSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLI 125
Query: 131 YMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF---GTCSG 187
+MGV P R L +DIGGGSTE VIG+ + + ES +G VS ++ + G +
Sbjct: 126 FMGVEHTQPEKGR-KLVIDIGGGSTELVIGENFEPILVESRRMGCVSFAQLYFPGGVINK 184
Query: 188 -NFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNV 246
NF+ +M ++ L + + + G+ VA+G+SGTI+A + ++ ++D +
Sbjct: 185 ENFQRA-RMAAAQKLETLTW----QFRIQGWNVAMGASGTIKAAHEVLMEMGEKDGI--- 236
Query: 247 GDFGGCKRDWRLSRGELKGIVERLCCGGDGXXXXXXXXXXXXXXXXXIVAGAVLLDEIFE 306
++ L+ +V+ + + V G +L +F+
Sbjct: 237 -----------ITPERLEKLVKEVLRHRN--FASLSLPGLSEERKTVFVPGLAILCGVFD 283
Query: 307 LLGIEEMEVSGYGLGEGVVADSLAKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQC 366
L I E+ +S L EGV+ + +G + + R R+ LA +++ + +
Sbjct: 284 ALAIRELRLSDGALREGVLYE-----MEGRFRHQDVRSRTASSLANQYHIDS--EQARRV 336
Query: 367 ASIAKDIFEGLR-KCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQSC 425
++E R + KL + Q++ + L A +LH +G + G H+ S
Sbjct: 337 LDTTMQMYEQWREQQPKLAHPQLEAL----------LRWAAMLHEVGLNINHSGLHRHSA 386
Query: 426 HIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVIL 485
+I+ N D L G++ ++ ++A L R+HRK F +++F L ++RL V+L
Sbjct: 387 YILQNSD-LPGFNQEQQLMMATLVRYHRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLL 445
>pdb|2FLO|A Chain A, Crystal Structure Of Exopolyphosphatase (Ppx) From E. Coli
O157:h7
pdb|2FLO|B Chain B, Crystal Structure Of Exopolyphosphatase (Ppx) From E. Coli
O157:h7
pdb|2FLO|C Chain C, Crystal Structure Of Exopolyphosphatase (Ppx) From E. Coli
O157:h7
pdb|2FLO|D Chain D, Crystal Structure Of Exopolyphosphatase (Ppx) From E. Coli
O157:h7
Length = 524
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 113/475 (23%), Positives = 205/475 (43%), Gaps = 39/475 (8%)
Query: 11 PQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLXXXXXXXXXXXXXXVE 70
PQ FA++D+G++SF +I R +G I LKQ V L L +
Sbjct: 21 PQE-FAAVDLGSNSFHXVIARVV-DGAXQIIGRLKQRVHLADGLGPDNXLSEEAXTRGLN 78
Query: 71 SLLMFRDIIQSHNISRDHXXXXXXXXXXXXENKDEFVECVREKVGFEVDVLTGEQEAKFV 130
L +F + +Q S N +F++ + + + +++++G +EA+ +
Sbjct: 79 CLSLFAERLQG--FSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLI 136
Query: 131 YMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCSGNFE 190
+ GV P R L +DIGGGSTE VIG+ + + ES G VS ++ + +
Sbjct: 137 FXGVEHTQPEKGR-KLVIDIGGGSTELVIGENFEPILVESRRXGCVSFAQLYFPGGVINK 195
Query: 191 EVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDFG 250
E + LE L + + G+ VA G+SGTI+A + + ++D +
Sbjct: 196 ENFQRARXAAAQKLE-TLTWQFRIQGWNVAXGASGTIKAAHEVLXEXGEKDGI------- 247
Query: 251 GCKRDWRLSRGELKGIVERLCCGGDGXXXXXXXXXXXXXXXXXIVAGAVLLDEIFELLGI 310
++ L+ +V+ + + V G +L +F+ L I
Sbjct: 248 -------ITPERLEKLVKEVLRHRN--FASLSLPGLSEERKTVFVPGLAILCGVFDALAI 298
Query: 311 EEMEVSGYGLGEGVVADSLAKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIA 370
E+ +S L EGV+ + +G + + R R+ LA +++ + A
Sbjct: 299 RELRLSDGALREGVLYEX-----EGRFRHQDVRSRTASSLANQYHID---------SEQA 344
Query: 371 KDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQSCHIIMN 430
+ + + + + + Q +A + + L L A LH +G + G H+ S +I+ N
Sbjct: 345 RRVLDTTXQXYEQWREQQPKLAHPQLEAL--LRWAAXLHEVGLNINHSGLHRHSAYILQN 402
Query: 431 GDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVIL 485
D L G++ ++ A L R+HRK F +++F L ++RL V+L
Sbjct: 403 SD-LPGFNQEQQLXXATLVRYHRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLL 456
>pdb|3MDQ|A Chain A, Crystal Structure Of An Exopolyphosphatase (Chu_0316) From
Cytophaga Hutchinsonii Atcc 33406 At 1.50 A Resolution
Length = 315
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 3/165 (1%)
Query: 18 IDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLXXXXXXXXXXXXXXVESLLMFRD 77
ID GT++F LLI N + T+ K V LG+ +++L FR
Sbjct: 9 IDXGTNTFHLLITDIV-NDRPHTLVNEKSAVGLGKGGITKGFITEEAXDRALDTLKKFRV 67
Query: 78 IIQSHNISRDHXXXXXXXXXXXXENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQF 137
I+ H + H NK ++ ++++V +V+V+ G +EA+ ++ GV Q
Sbjct: 68 ILDEHAVV--HVIATGTSAVRSGSNKQVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQA 125
Query: 138 LPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182
+P D + L+ DIGGGS EF+IG + ++++ +S +G L ++F
Sbjct: 126 VPXEDHISLAXDIGGGSVEFIIGNKNEILWKQSFEIGGQRLIDRF 170
>pdb|2J4R|A Chain A, Structural Study Of The Aquifex Aeolicus Ppx-Gppa Enzyme
pdb|2J4R|B Chain B, Structural Study Of The Aquifex Aeolicus Ppx-Gppa Enzyme
Length = 308
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 4/185 (2%)
Query: 10 IPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLXXXXXXXXXXXXXXV 69
+P ASID+G++S +L I + +GK I + LG + +
Sbjct: 4 MPIMRVASIDIGSNSVRLTIAQI-KDGKLSIILERGRITSLGTKVKETGRLQEDRIEETI 62
Query: 70 ESLLMFRDIIQSHNISRDHXXXXXXXXXXXXENKDEFVECVREKVGFEVDVLTGEQEAKF 129
+ L ++ +I + R +N +EF+E V+ +VG V+V+T EQE ++
Sbjct: 63 QVLKEYKKLIDEFKVER--VKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRY 120
Query: 130 VYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCSGNF 189
Y+ V L + V VD GGGSTE+V GK KV S+ +G V+L+E F
Sbjct: 121 AYLAVAYSLKP-EGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPT 179
Query: 190 EEVLK 194
EE +K
Sbjct: 180 EEEVK 184
>pdb|1T6D|A Chain A, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE:
CRYSTAL Structure Of The Type Ii Variant
pdb|1T6D|B Chain B, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE:
CRYSTAL Structure Of The Type Ii Variant
Length = 315
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 4/184 (2%)
Query: 11 PQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLXXXXXXXXXXXXXXVE 70
P ASID+G+ S +L I + +GK I + LG + ++
Sbjct: 10 PIXRVASIDIGSYSVRLTIAQI-KDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQ 68
Query: 71 SLLMFRDIIQSHNISRDHXXXXXXXXXXXXENKDEFVECVREKVGFEVDVLTGEQEAKFV 130
L ++ +I + R +N +EF+E V+ +VG V+V+T EQE ++
Sbjct: 69 VLKEYKKLIDEFKVERXKAVATEAIRRA--KNAEEFLERVKREVGLVVEVITPEQEGRYA 126
Query: 131 YMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCSGNFE 190
Y+ V L + V VD GGGSTE+V GK KV S+ +G V+L+E F E
Sbjct: 127 YLAVAYSLKP-EGEVXVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTE 185
Query: 191 EVLK 194
E +K
Sbjct: 186 EEVK 189
>pdb|1T6C|A Chain A, Structural Characterization Of The PpxGPPA PROTEIN FAMILY:
CRYSTAL Structure Of The Aquifex Aeolicus Family Member
Length = 315
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 4/184 (2%)
Query: 11 PQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLXXXXXXXXXXXXXXVE 70
P ASID+G+ S +L I + +GK I + LG + ++
Sbjct: 10 PIMRVASIDIGSYSVRLTIAQI-KDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQ 68
Query: 71 SLLMFRDIIQSHNISRDHXXXXXXXXXXXXENKDEFVECVREKVGFEVDVLTGEQEAKFV 130
L ++ +I + R +N +EF+E V+ +VG V+V+T EQE ++
Sbjct: 69 VLKEYKKLIDEFKVER--VKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYA 126
Query: 131 YMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCSGNFE 190
Y+ V L + V VD GGGSTE+V GK KV S+ +G V+L+E F E
Sbjct: 127 YLAVAYSLKP-EGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTE 185
Query: 191 EVLK 194
E +K
Sbjct: 186 EEVK 189
>pdb|3CER|A Chain A, Crystal Structure Of The Exopolyphosphatase-Like Protein
Q8g5j2. Northeast Structural Genomics Consortium Target
Blr13
pdb|3CER|B Chain B, Crystal Structure Of The Exopolyphosphatase-Like Protein
Q8g5j2. Northeast Structural Genomics Consortium Target
Blr13
pdb|3CER|C Chain C, Crystal Structure Of The Exopolyphosphatase-Like Protein
Q8g5j2. Northeast Structural Genomics Consortium Target
Blr13
pdb|3CER|D Chain D, Crystal Structure Of The Exopolyphosphatase-Like Protein
Q8g5j2. Northeast Structural Genomics Consortium Target
Blr13
pdb|3CER|E Chain E, Crystal Structure Of The Exopolyphosphatase-Like Protein
Q8g5j2. Northeast Structural Genomics Consortium Target
Blr13
Length = 343
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 16 ASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLXXXXXXXXXXXXXXVESLLMF 75
A ID GT+S +L I R +G + + + + LG+D+ + F
Sbjct: 19 AGIDCGTNSIRLKIARVDADGXHEVVPRILRVIRLGQDVDKTHRFADEALERAYVAAREF 78
Query: 76 RDIIQSHNISRDHXXXXXXXXXXXXENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVL 135
+I H I D EN++EF + + +G +V+ G +EA ++G
Sbjct: 79 AGVIAEHPI--DGLRFVATSATRDAENREEFEDEIERILGVRPEVIPGTEEADLSFLGAT 136
Query: 136 QFLPVFDRLV--LSVDIGGGSTEFVIGKRG------KVVFCESVNLGHVSLSEK 181
+ D L VD+GGGSTE VIG G +V S N+G V +E+
Sbjct: 137 SVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSXNIGSVRXTER 190
>pdb|3RF0|A Chain A, Crystal Structure Of Exopolyphosphatase From Yersinia
Pestis
pdb|3RF0|B Chain B, Crystal Structure Of Exopolyphosphatase From Yersinia
Pestis
Length = 209
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 377 LRKCDKLYNNQVKLIASFEDKDLE-YLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLY 435
L ++LY + LE L+ A LH +G + G H+ S +I+ N + L
Sbjct: 28 LETTEQLYTQWLAQNTKLVQPQLEALLKWAAXLHEVGLSINHSGXHRHSAYILQNTN-LP 86
Query: 436 GYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVIL 485
G++ ++ L+A L R HRK L F ++ + L ++RLS +L
Sbjct: 87 GFNQEQQTLLATLVRXHRKAIKLDELPRLNLFKKKYYLPLIQLLRLSTLL 136
>pdb|3HI0|A Chain A, Crystal Structure Of Putative Exopolyphosphatase
(17739545) From Agrobacterium Tumefaciens Str. C58
(Dupont) At 2.30 A Resolution
pdb|3HI0|B Chain B, Crystal Structure Of Putative Exopolyphosphatase
(17739545) From Agrobacterium Tumefaciens Str. C58
(Dupont) At 2.30 A Resolution
Length = 508
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 101 ENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160
EN +F+ +G E++VL+GE+EA + GV+ D ++ D+GGGS E +
Sbjct: 100 ENGPDFIREAEAILGCEIEVLSGEKEALYSAYGVISGFYQPDG--IAGDLGGGSLELIDI 157
Query: 161 KRGKVVFCESVNLGHVSLSEKFGTCSGNFEEVLKMREYVRMVILEFGLVEKVKESGFEVA 220
K ++ LG + LSE+ G+ E+ + R + F + E A
Sbjct: 158 KDKSCGEGITLPLGGLRLSEQ---SDGSLEKAATI---ARKHVKSFAKLLAAGEGRTFYA 211
Query: 221 VGSSGTIRAIEK--AVVSGY 238
VG GT R I K +SGY
Sbjct: 212 VG--GTWRNIAKLHXEISGY 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,674,635
Number of Sequences: 62578
Number of extensions: 631142
Number of successful extensions: 1569
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1540
Number of HSP's gapped (non-prelim): 18
length of query: 573
length of database: 14,973,337
effective HSP length: 104
effective length of query: 469
effective length of database: 8,465,225
effective search space: 3970190525
effective search space used: 3970190525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)