Query 008237
Match_columns 573
No_of_seqs 277 out of 1526
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 21:14:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11031 guanosine pentaphosph 100.0 1E-103 3E-108 860.1 58.8 489 11-551 4-494 (496)
2 PRK10854 exopolyphosphatase; P 100.0 4E-103 8E-108 860.9 58.3 495 13-556 11-509 (513)
3 COG0248 GppA Exopolyphosphatas 100.0 4.8E-93 1E-97 763.7 41.8 447 13-495 3-452 (492)
4 TIGR03706 exo_poly_only exopol 100.0 7.5E-63 1.6E-67 508.5 34.1 295 15-329 2-299 (300)
5 PF02541 Ppx-GppA: Ppx/GppA ph 100.0 2.1E-56 4.5E-61 458.1 29.0 282 28-331 1-284 (285)
6 PRK15080 ethanolamine utilizat 99.7 4.8E-15 1E-19 150.6 20.2 155 4-182 15-174 (267)
7 PF01150 GDA1_CD39: GDA1/CD39 98.9 1.1E-08 2.5E-13 111.2 13.2 149 13-162 8-183 (434)
8 TIGR02529 EutJ ethanolamine ut 98.7 1.5E-06 3.2E-11 87.0 19.2 146 18-183 2-148 (239)
9 KOG1386 Nucleoside phosphatase 98.4 1.5E-06 3.2E-11 92.3 11.1 147 13-162 9-181 (501)
10 PRK09472 ftsA cell division pr 98.4 1.4E-05 3E-10 86.7 18.4 40 143-182 204-243 (420)
11 KOG1385 Nucleoside phosphatase 98.4 7.5E-07 1.6E-11 92.5 7.7 147 13-162 67-232 (453)
12 PF01966 HD: HD domain; Inter 98.2 3.5E-07 7.5E-12 80.3 0.4 106 361-487 3-121 (122)
13 TIGR01174 ftsA cell division p 98.1 0.00014 3E-09 77.6 18.6 161 15-182 2-235 (371)
14 TIGR01175 pilM type IV pilus a 98.0 0.0015 3.4E-08 68.8 23.9 162 13-182 3-227 (348)
15 COG0849 ftsA Cell division ATP 97.9 0.00087 1.9E-08 72.0 19.2 40 144-183 204-243 (418)
16 cd00077 HDc Metal dependent ph 97.8 7.1E-05 1.5E-09 66.4 7.4 112 361-490 5-127 (145)
17 smart00471 HDc Metal dependent 97.8 0.0001 2.2E-09 64.0 8.1 101 361-490 7-117 (124)
18 PF06723 MreB_Mbl: MreB/Mbl pr 97.5 0.0022 4.8E-08 66.9 14.8 153 16-181 4-183 (326)
19 PRK10719 eutA reactivating fac 97.4 0.0021 4.7E-08 69.2 13.0 152 15-181 8-184 (475)
20 TIGR03401 cyanamide_fam HD dom 97.2 0.0042 9.1E-08 61.6 12.4 116 344-487 41-165 (228)
21 PF11104 PilM_2: Type IV pilus 97.2 0.0082 1.8E-07 63.3 14.6 40 144-183 181-220 (340)
22 TIGR00295 conserved hypothetic 97.1 0.0023 4.9E-08 60.3 9.2 117 349-487 3-125 (164)
23 PRK13928 rod shape-determining 97.1 0.014 3E-07 61.5 15.2 89 90-182 97-186 (336)
24 PF06277 EutA: Ethanolamine ut 96.9 0.028 6.1E-07 60.7 15.4 152 15-175 5-175 (473)
25 PRK13930 rod shape-determining 96.8 0.022 4.9E-07 59.7 14.3 89 90-182 102-191 (335)
26 PRK13929 rod-share determining 96.8 0.027 5.8E-07 59.3 14.9 117 56-181 67-188 (335)
27 TIGR00241 CoA_E_activ CoA-subs 96.7 0.012 2.5E-07 59.3 10.9 130 15-183 2-134 (248)
28 COG4972 PilM Tfp pilus assembl 96.7 0.14 3.1E-06 52.7 17.7 71 113-183 160-233 (354)
29 TIGR00904 mreB cell shape dete 96.6 0.043 9.3E-07 57.6 14.2 89 90-182 100-189 (333)
30 PRK13927 rod shape-determining 96.3 0.074 1.6E-06 55.8 14.4 88 91-182 99-187 (334)
31 COG4820 EutJ Ethanolamine util 96.3 0.013 2.7E-07 56.0 7.5 142 11-177 27-174 (277)
32 TIGR03319 YmdA_YtgF conserved 96.3 0.017 3.6E-07 64.2 9.7 93 361-492 332-427 (514)
33 PRK12704 phosphodiesterase; Pr 96.3 0.018 4E-07 63.9 10.0 93 361-492 338-433 (520)
34 TIGR00277 HDIG uncharacterized 96.2 0.018 3.9E-07 46.4 7.1 67 361-453 7-78 (80)
35 PRK12705 hypothetical protein; 96.1 0.032 6.8E-07 61.5 10.0 93 361-492 326-421 (508)
36 PRK12703 tRNA 2'-O-methylase; 95.9 0.05 1.1E-06 56.9 10.2 118 345-489 173-296 (339)
37 PRK07152 nadD putative nicotin 95.8 0.018 3.8E-07 60.9 6.7 93 361-490 199-311 (342)
38 PRK00106 hypothetical protein; 95.8 0.039 8.5E-07 61.1 9.3 93 361-492 353-448 (535)
39 COG3294 HD supefamily hydrolas 95.8 0.013 2.9E-07 56.7 4.9 70 357-429 56-127 (269)
40 TIGR01596 cas3_HD CRISPR-assoc 95.6 0.022 4.9E-07 53.6 5.8 85 361-458 3-106 (177)
41 smart00268 ACTIN Actin. ACTIN 95.4 0.15 3.3E-06 54.3 12.0 92 82-182 89-184 (373)
42 PF08841 DDR: Diol dehydratase 95.3 0.041 8.8E-07 55.3 6.6 87 91-181 83-171 (332)
43 PRK10119 putative hydrolase; P 95.3 0.11 2.3E-06 51.8 9.5 77 360-455 27-110 (231)
44 TIGR00488 putative HD superfam 95.2 0.073 1.6E-06 49.7 7.7 93 361-490 11-125 (158)
45 COG1077 MreB Actin-like ATPase 95.2 0.15 3.4E-06 52.3 10.3 109 67-180 80-190 (342)
46 cd00012 ACTIN Actin; An ubiqui 94.9 0.46 9.9E-06 50.6 14.0 87 88-183 95-185 (371)
47 PRK00227 glnD PII uridylyl-tra 94.9 0.033 7.2E-07 63.8 5.2 54 399-453 402-455 (693)
48 COG3437 Response regulator con 94.8 0.053 1.1E-06 56.4 6.0 109 361-487 188-308 (360)
49 COG4819 EutA Ethanolamine util 94.8 0.44 9.5E-06 49.0 12.3 153 16-175 8-177 (473)
50 COG1078 HD superfamily phospho 94.8 0.048 1E-06 59.0 5.8 57 361-431 54-110 (421)
51 PRK03381 PII uridylyl-transfer 94.7 0.036 7.8E-07 64.8 5.1 53 400-453 443-495 (774)
52 PTZ00280 Actin-related protein 94.4 0.71 1.5E-05 50.1 14.0 91 92-182 107-201 (414)
53 COG2206 c-di-GMP phosphodieste 94.0 0.12 2.5E-06 54.7 6.8 106 361-490 151-274 (344)
54 PTZ00004 actin-2; Provisional 94.0 1.2 2.7E-05 47.6 14.6 151 15-182 8-190 (378)
55 COG5371 Golgi nucleoside dipho 93.9 0.075 1.6E-06 56.7 4.9 143 13-161 120-285 (549)
56 TIGR02692 tRNA_CCA_actino tRNA 93.8 0.081 1.8E-06 58.3 5.1 55 400-454 280-344 (466)
57 PRK05007 PII uridylyl-transfer 93.6 0.094 2E-06 62.3 5.7 55 399-454 498-552 (884)
58 PRK00275 glnD PII uridylyl-tra 93.6 0.078 1.7E-06 63.0 4.9 52 400-452 498-549 (895)
59 PF00370 FGGY_N: FGGY family o 93.5 0.43 9.2E-06 47.6 9.5 80 14-99 1-80 (245)
60 PRK04374 PII uridylyl-transfer 93.2 0.11 2.4E-06 61.4 5.3 53 400-453 487-539 (869)
61 PRK01759 glnD PII uridylyl-tra 93.0 0.13 2.8E-06 60.9 5.5 55 399-454 473-527 (854)
62 smart00842 FtsA Cell division 92.9 0.45 9.7E-06 45.6 8.3 57 15-77 1-57 (187)
63 PRK03059 PII uridylyl-transfer 92.9 0.14 3.1E-06 60.5 5.7 54 399-453 477-530 (856)
64 PRK13917 plasmid segregation p 92.4 0.29 6.3E-06 51.7 6.7 40 142-181 184-225 (344)
65 PTZ00466 actin-like protein; P 92.3 2.7 5.8E-05 45.1 14.0 153 13-182 12-195 (380)
66 TIGR02261 benz_CoA_red_D benzo 92.2 1 2.2E-05 45.6 9.9 118 14-166 2-121 (262)
67 PRK05092 PII uridylyl-transfer 92.0 0.24 5.1E-06 59.4 6.0 54 399-453 530-583 (931)
68 TIGR01693 UTase_glnD [Protein- 91.6 0.26 5.7E-06 58.5 5.8 54 399-453 465-518 (850)
69 PRK10885 cca multifunctional t 91.5 0.31 6.7E-06 52.7 5.7 54 400-453 246-306 (409)
70 TIGR03192 benz_CoA_bzdQ benzoy 91.2 3.2 6.9E-05 42.7 12.4 115 14-166 33-149 (293)
71 COG1418 Predicted HD superfami 91.0 0.27 5.8E-06 48.7 4.3 54 360-431 38-94 (222)
72 PTZ00452 actin; Provisional 90.8 4.4 9.5E-05 43.4 13.7 93 82-182 94-189 (375)
73 PF14574 DUF4445: Domain of un 90.4 2.4 5.2E-05 45.9 11.1 157 16-176 4-196 (412)
74 TIGR03739 PRTRC_D PRTRC system 90.0 0.58 1.3E-05 48.9 6.0 66 117-182 141-208 (320)
75 PRK13298 tRNA CCA-pyrophosphor 90.0 0.29 6.4E-06 52.7 3.9 55 400-454 247-310 (417)
76 TIGR03286 methan_mark_15 putat 89.8 1.4 3E-05 47.2 8.6 118 13-166 144-264 (404)
77 TIGR02621 cas3_GSU0051 CRISPR- 89.7 1.1 2.4E-05 52.5 8.5 81 361-457 678-788 (844)
78 PF00022 Actin: Actin; InterP 89.7 7.1 0.00015 41.7 14.3 92 82-182 88-183 (393)
79 TIGR01991 HscA Fe-S protein as 89.7 4.7 0.0001 46.0 13.4 115 59-181 103-224 (599)
80 PTZ00281 actin; Provisional 89.0 2.5 5.5E-05 45.2 10.1 94 81-182 94-190 (376)
81 COG1940 NagC Transcriptional r 88.6 9.9 0.00021 39.3 14.1 144 13-174 6-163 (314)
82 CHL00094 dnaK heat shock prote 88.1 5.4 0.00012 45.7 12.6 106 69-180 117-229 (621)
83 PTZ00186 heat shock 70 kDa pre 87.4 5.8 0.00013 45.7 12.3 98 60-165 135-236 (657)
84 PF00480 ROK: ROK family; Int 86.6 12 0.00026 34.9 12.2 129 17-168 1-142 (179)
85 TIGR03276 Phn-HD phosphonate d 86.3 1.1 2.3E-05 42.8 4.6 43 402-449 46-99 (179)
86 PRK00290 dnaK molecular chaper 86.2 4.9 0.00011 46.1 10.9 106 68-180 114-227 (627)
87 PRK11678 putative chaperone; P 85.8 7.8 0.00017 42.6 11.8 87 69-161 131-227 (450)
88 COG2844 GlnD UTP:GlnB (protein 85.8 0.66 1.4E-05 53.2 3.5 54 398-452 482-535 (867)
89 PF00012 HSP70: Hsp70 protein; 84.5 6.8 0.00015 44.4 11.1 108 69-182 117-232 (602)
90 PRK13321 pantothenate kinase; 84.4 26 0.00057 35.3 14.1 130 15-166 2-147 (256)
91 PRK13410 molecular chaperone D 84.4 11 0.00023 43.7 12.5 95 59-161 109-205 (668)
92 PRK05183 hscA chaperone protei 84.3 6.7 0.00014 44.9 10.8 113 59-180 123-243 (616)
93 TIGR02350 prok_dnaK chaperone 84.3 6.9 0.00015 44.5 10.9 88 68-161 111-201 (595)
94 PRK10939 autoinducer-2 (AI-2) 83.5 3.5 7.7E-05 46.0 8.0 79 13-98 3-84 (520)
95 PTZ00400 DnaK-type molecular c 82.6 11 0.00023 43.7 11.6 106 68-180 155-268 (663)
96 PRK01286 deoxyguanosinetriphos 82.5 4 8.7E-05 42.9 7.3 35 361-413 65-99 (336)
97 PLN03184 chloroplast Hsp70; Pr 82.3 12 0.00026 43.3 11.9 70 107-180 191-266 (673)
98 PF14450 FtsA: Cell division p 81.9 2.8 6.1E-05 37.1 5.2 33 145-177 1-33 (120)
99 PRK13318 pantothenate kinase; 81.8 20 0.00043 36.1 12.0 128 15-166 2-147 (258)
100 PRK13480 3'-5' exoribonuclease 81.1 1.5 3.2E-05 45.7 3.6 41 361-418 162-202 (314)
101 PRK00047 glpK glycerol kinase; 80.9 5.7 0.00012 44.1 8.4 77 13-98 5-84 (498)
102 PRK01433 hscA chaperone protei 80.4 9 0.0002 43.7 9.9 88 68-161 122-211 (595)
103 PF01869 BcrAD_BadFG: BadF/Bad 80.4 23 0.0005 35.7 12.0 127 17-168 2-131 (271)
104 COG1924 Activator of 2-hydroxy 80.3 8.2 0.00018 40.9 8.6 137 10-183 132-272 (396)
105 smart00732 YqgFc Likely ribonu 80.1 7.1 0.00015 32.7 6.9 84 15-122 3-91 (99)
106 TIGR02628 fuculo_kin_coli L-fu 79.8 7.9 0.00017 42.6 9.0 77 14-99 2-81 (465)
107 TIGR00555 panK_eukar pantothen 79.6 74 0.0016 32.6 15.2 131 16-180 3-137 (279)
108 KOG2517 Ribulose kinase and re 79.4 7.2 0.00016 43.2 8.2 85 12-99 5-90 (516)
109 COG0443 DnaK Molecular chapero 79.3 12 0.00027 42.4 10.5 96 59-161 94-190 (579)
110 TIGR00744 ROK_glcA_fam ROK fam 79.0 52 0.0011 33.9 14.4 132 17-167 2-147 (318)
111 TIGR01353 dGTP_triPase deoxygu 78.8 2.4 5.2E-05 45.4 4.4 85 361-453 41-146 (381)
112 PTZ00009 heat shock 70 kDa pro 78.2 27 0.00058 40.4 12.9 89 69-161 122-212 (653)
113 PF14450 FtsA: Cell division p 77.7 1.4 3E-05 39.1 1.8 27 15-41 1-27 (120)
114 COG0554 GlpK Glycerol kinase [ 77.2 7.5 0.00016 42.4 7.4 76 12-93 4-79 (499)
115 COG1070 XylB Sugar (pentulose 76.8 12 0.00027 41.5 9.5 78 12-97 3-83 (502)
116 PRK13411 molecular chaperone D 76.6 21 0.00046 41.2 11.5 94 60-161 108-204 (653)
117 PF06406 StbA: StbA protein; 74.7 7.7 0.00017 40.5 6.7 62 118-183 143-207 (318)
118 TIGR01311 glycerol_kin glycero 74.7 8.4 0.00018 42.7 7.4 76 14-98 2-80 (493)
119 PRK04123 ribulokinase; Provisi 74.3 15 0.00031 41.4 9.3 82 13-100 3-91 (548)
120 TIGR01234 L-ribulokinase L-rib 73.5 13 0.00029 41.7 8.7 79 14-98 2-92 (536)
121 PTZ00294 glycerol kinase-like 73.4 14 0.00031 41.1 8.8 77 14-99 3-84 (504)
122 PRK10331 L-fuculokinase; Provi 72.6 21 0.00046 39.2 10.0 78 13-99 2-82 (470)
123 PRK05318 deoxyguanosinetriphos 71.8 4.8 0.0001 43.9 4.5 83 361-452 61-163 (432)
124 TIGR03123 one_C_unchar_1 proba 71.7 93 0.002 32.6 13.7 139 17-174 2-159 (318)
125 KOG2681 Metal-dependent phosph 70.5 5.7 0.00012 42.5 4.5 70 361-444 76-149 (498)
126 PRK01096 deoxyguanosinetriphos 70.4 4.7 0.0001 44.0 4.1 50 361-413 64-113 (440)
127 TIGR01315 5C_CHO_kinase FGGY-f 69.0 23 0.00051 39.8 9.4 75 15-96 2-77 (541)
128 PRK09698 D-allose kinase; Prov 68.1 1.5E+02 0.0032 30.3 14.5 136 13-168 4-154 (302)
129 KOG0100 Molecular chaperones G 67.4 47 0.001 35.6 10.3 95 56-164 143-248 (663)
130 COG1713 Predicted HD superfami 66.9 9 0.0002 36.7 4.6 38 361-416 20-57 (187)
131 PLN02295 glycerol kinase 66.8 19 0.0004 40.2 8.0 76 15-99 2-84 (512)
132 COG4341 Predicted HD phosphohy 66.7 2.8 6.1E-05 38.9 1.1 20 401-420 50-69 (186)
133 COG2971 Predicted N-acetylgluc 66.6 50 0.0011 34.1 10.2 136 12-174 4-149 (301)
134 TIGR03760 ICE_TraI_Pfluor inte 65.9 7.2 0.00016 38.5 3.9 18 398-415 104-121 (218)
135 PRK13317 pantothenate kinase; 65.8 1.3E+02 0.0029 30.7 13.3 63 114-180 67-132 (277)
136 PRK04926 dgt deoxyguanosinetri 65.2 8.4 0.00018 42.7 4.7 15 399-413 107-121 (503)
137 PF01968 Hydantoinase_A: Hydan 64.8 8.2 0.00018 39.7 4.3 32 142-173 76-107 (290)
138 PF11215 DUF3010: Protein of u 63.2 1.2E+02 0.0026 27.6 11.5 99 14-125 2-104 (138)
139 PRK03007 deoxyguanosinetriphos 62.0 8.4 0.00018 41.9 3.9 73 361-452 73-169 (428)
140 PRK13311 N-acetyl-D-glucosamin 61.5 1.1E+02 0.0024 30.5 11.8 133 15-167 2-146 (256)
141 TIGR01312 XylB D-xylulose kina 60.8 21 0.00046 39.2 7.0 72 17-97 2-76 (481)
142 COG3894 Uncharacterized metal- 60.1 16 0.00035 40.0 5.5 161 11-176 161-360 (614)
143 TIGR01314 gntK_FGGY gluconate 58.7 35 0.00077 37.9 8.3 74 15-98 2-78 (505)
144 PRK15027 xylulokinase; Provisi 57.7 40 0.00086 37.3 8.4 76 15-99 2-78 (484)
145 PRK09557 fructokinase; Reviewe 57.1 1E+02 0.0023 31.5 11.0 133 15-169 2-148 (301)
146 PRK13310 N-acetyl-D-glucosamin 54.0 1.6E+02 0.0034 30.1 11.7 132 15-168 2-147 (303)
147 COG1069 AraB Ribulose kinase [ 52.3 49 0.0011 36.8 7.7 73 13-93 3-78 (544)
148 cd08190 HOT Hydroxyacid-oxoaci 52.1 22 0.00049 38.5 5.2 78 71-155 10-92 (414)
149 PRK09860 putative alcohol dehy 49.0 75 0.0016 34.1 8.6 78 71-155 18-100 (383)
150 PRK13324 pantothenate kinase; 47.4 3.2E+02 0.0069 27.7 13.1 130 15-166 2-147 (258)
151 PRK00109 Holliday junction res 46.7 1.6E+02 0.0036 26.6 9.2 94 14-131 5-108 (138)
152 cd08188 Fe-ADH4 Iron-containin 46.4 58 0.0013 34.8 7.2 80 71-155 15-97 (377)
153 PF00633 HHH: Helix-hairpin-he 46.1 12 0.00025 24.7 1.1 27 268-296 3-29 (30)
154 PRK10854 exopolyphosphatase; P 45.6 1.1E+02 0.0023 34.3 9.4 57 14-73 138-195 (513)
155 cd08191 HHD 6-hydroxyhexanoate 45.1 54 0.0012 35.2 6.7 79 71-155 10-91 (386)
156 TIGR01175 pilM type IV pilus a 45.1 1.1E+02 0.0023 32.0 9.0 34 87-125 284-317 (348)
157 TIGR03706 exo_poly_only exopol 45.0 1.4E+02 0.003 30.8 9.5 57 15-74 127-184 (300)
158 PF01890 CbiG_C: Cobalamin syn 43.5 1E+02 0.0022 27.4 7.1 53 75-130 21-73 (121)
159 PF07318 DUF1464: Protein of u 42.9 2E+02 0.0044 30.3 10.2 66 103-169 90-180 (343)
160 TIGR02638 lactal_redase lactal 42.2 94 0.002 33.2 8.0 78 71-155 16-98 (379)
161 cd08192 Fe-ADH7 Iron-containin 42.1 37 0.00079 36.2 4.9 80 71-155 11-93 (370)
162 PLN02669 xylulokinase 42.1 91 0.002 35.3 8.3 82 11-98 6-99 (556)
163 PRK10624 L-1,2-propanediol oxi 42.1 90 0.002 33.4 7.9 77 72-155 18-99 (382)
164 PRK15454 ethanol dehydrogenase 41.6 90 0.002 33.6 7.8 80 71-155 36-118 (395)
165 cd08551 Fe-ADH iron-containing 41.4 1.1E+02 0.0024 32.4 8.4 78 71-155 10-92 (370)
166 PRK00976 hypothetical protein; 40.0 4.7E+02 0.01 27.5 13.1 61 104-169 94-174 (326)
167 PRK07027 cobalamin biosynthesi 39.0 1.2E+02 0.0026 27.1 6.9 61 60-129 14-74 (126)
168 TIGR02627 rhamnulo_kin rhamnul 36.6 56 0.0012 35.8 5.4 17 17-33 2-18 (454)
169 cd08189 Fe-ADH5 Iron-containin 35.9 1.6E+02 0.0034 31.4 8.6 80 71-155 13-95 (374)
170 PRK13331 pantothenate kinase; 34.5 3.3E+02 0.0071 27.5 10.0 18 14-31 8-25 (251)
171 COG0232 Dgt dGTP triphosphohyd 34.1 45 0.00098 36.0 3.9 41 361-414 71-111 (412)
172 COG0816 Predicted endonuclease 33.9 2.5E+02 0.0054 25.7 8.2 87 14-123 3-96 (141)
173 cd08176 LPO Lactadehyde:propan 33.1 63 0.0014 34.5 5.0 77 72-155 16-97 (377)
174 COG0248 GppA Exopolyphosphatas 32.8 1.5E+02 0.0033 32.9 7.9 79 12-97 128-211 (492)
175 PF08668 HDOD: HDOD domain; I 32.7 19 0.00041 34.3 0.8 46 361-423 97-142 (196)
176 COG1548 Predicted transcriptio 32.4 5.5E+02 0.012 26.2 10.7 128 14-163 4-150 (330)
177 cd07766 DHQ_Fe-ADH Dehydroquin 31.9 55 0.0012 34.1 4.2 78 72-155 11-90 (332)
178 TIGR02707 butyr_kinase butyrat 31.8 6.4E+02 0.014 26.7 14.0 27 142-169 173-199 (351)
179 TIGR02578 cas_TM1811_Csm1 CRIS 31.0 22 0.00048 41.0 1.0 26 403-428 2-35 (648)
180 TIGR02259 benz_CoA_red_A benzo 30.1 86 0.0019 33.9 5.1 20 13-32 2-21 (432)
181 COG1454 EutG Alcohol dehydroge 29.8 2.4E+02 0.0051 30.4 8.4 78 71-155 16-98 (377)
182 PF03610 EIIA-man: PTS system 29.6 87 0.0019 27.1 4.5 51 105-155 13-71 (116)
183 cd08194 Fe-ADH6 Iron-containin 29.6 75 0.0016 33.9 4.8 80 71-155 10-92 (375)
184 PRK13321 pantothenate kinase; 29.2 90 0.0019 31.4 5.0 29 145-173 2-30 (256)
185 PRK11031 guanosine pentaphosph 29.1 1.8E+02 0.004 32.3 7.9 57 14-73 133-190 (496)
186 PRK00292 glk glucokinase; Prov 28.1 4.1E+02 0.0088 27.3 9.9 122 12-153 1-138 (316)
187 COG4680 Uncharacterized protei 27.5 50 0.0011 27.8 2.2 19 15-33 56-74 (98)
188 cd08185 Fe-ADH1 Iron-containin 26.8 2.3E+02 0.0049 30.3 7.9 74 74-155 16-95 (380)
189 cd08169 DHQ-like Dehydroquinat 25.9 2.3E+02 0.005 29.9 7.6 79 74-156 13-96 (344)
190 PRK13318 pantothenate kinase; 25.6 1.2E+02 0.0026 30.4 5.3 29 145-173 2-30 (258)
191 PF13941 MutL: MutL protein 25.2 1.3E+02 0.0029 33.1 5.7 53 15-75 2-55 (457)
192 cd08186 Fe-ADH8 Iron-containin 25.1 2.8E+02 0.006 29.7 8.2 77 72-155 11-96 (383)
193 cd08550 GlyDH-like Glycerol_de 24.9 1.4E+02 0.0031 31.3 5.9 77 72-155 11-89 (349)
194 PF00349 Hexokinase_1: Hexokin 24.7 2.4E+02 0.0052 27.5 6.9 59 14-77 64-122 (206)
195 PF11762 Arabinose_Iso_C: L-ar 23.9 1E+02 0.0022 27.1 3.6 19 14-33 32-50 (115)
196 PRK12408 glucokinase; Provisio 23.9 3E+02 0.0065 28.8 8.0 102 8-130 10-125 (336)
197 cd08193 HVD 5-hydroxyvalerate 23.5 3.3E+02 0.0072 28.9 8.4 80 71-155 13-95 (376)
198 cd08181 PPD-like 1,3-propanedi 23.5 1.2E+02 0.0027 32.0 5.1 75 75-155 17-95 (357)
199 KOG0679 Actin-related protein 23.1 81 0.0018 33.6 3.4 78 82-167 100-178 (426)
200 PF00233 PDEase_I: 3'5'-cyclic 23.0 1.3E+02 0.0027 30.0 4.7 42 361-413 5-46 (237)
201 cd08549 G1PDH_related Glycerol 22.8 1.7E+02 0.0036 30.7 5.8 74 77-155 16-92 (332)
202 PRK03011 butyrate kinase; Prov 22.7 5.9E+02 0.013 27.0 10.0 148 12-170 1-202 (358)
203 PRK05082 N-acetylmannosamine k 22.3 8.1E+02 0.017 24.6 13.0 129 15-167 3-145 (291)
204 PF10298 WhiA_N: WhiA N-termin 22.0 3.4E+02 0.0073 22.2 6.4 61 471-560 4-64 (86)
205 cd08175 G1PDH Glycerol-1-phosp 21.4 1.3E+02 0.0029 31.6 4.8 78 72-155 11-92 (348)
206 TIGR00250 RNAse_H_YqgF RNAse H 21.3 1.9E+02 0.0042 25.9 5.1 83 17-123 2-91 (130)
207 COG3481 Predicted HD-superfami 21.2 1E+02 0.0022 31.8 3.6 25 398-422 164-188 (287)
208 PF00370 FGGY_N: FGGY family o 21.2 1.6E+02 0.0034 29.0 5.0 30 145-174 2-32 (245)
209 COG0145 HyuA N-methylhydantoin 21.0 1.1E+02 0.0024 35.5 4.2 31 144-174 279-309 (674)
210 cd08182 HEPD Hydroxyethylphosp 20.8 2.3E+02 0.005 30.0 6.5 57 396-456 230-289 (367)
No 1
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=100.00 E-value=1.4e-103 Score=860.10 Aligned_cols=489 Identities=28% Similarity=0.381 Sum_probs=440.9
Q ss_pred CCCeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEE
Q 008237 11 PQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR 90 (573)
Q Consensus 11 ~~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (573)
+.+++|||||||||+||+|+++.+ +.++++++.|++||||+|++.+|.|++++|+|+++||++|+++|++|+|+ +|+
T Consensus 4 ~~~~~A~IDIGSNSirL~I~~~~~-~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~~~~~v~--~i~ 80 (496)
T PRK11031 4 SSSLYAAIDLGSNSFHMLVVREVA-GSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERLQDIPPS--QIR 80 (496)
T ss_pred CCCEEEEEEccccceeEEEEEecC-CceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eEE
Confidence 467899999999999999999864 78999999999999999999999999999999999999999999999995 799
Q ss_pred EEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEE
Q 008237 91 AVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCES 170 (573)
Q Consensus 91 ~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~S 170 (573)
+|||+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+||.+.++.. ++++++||||||||+++++++++.+++|
T Consensus 81 ~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~-~~~lviDIGGGStEl~~~~~~~~~~~~S 159 (496)
T PRK11031 81 VVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGA-DQRLVVDIGGASTELVTGTGAQATSLFS 159 (496)
T ss_pred EEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCC-CCEEEEEecCCeeeEEEecCCceeeeeE
Confidence 999999999999999999999999999999999999999999999988753 4589999999999999999999999999
Q ss_pred EehhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhcchhHHHHhcCCcEEEeehHHHHHHHHHHHcCCCCccccCCCCC
Q 008237 171 VNLGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDF 249 (573)
Q Consensus 171 lplG~vrl~e~f~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~liG~gGt~~~la~~~~~~y~~~~~~~~~~~ 249 (573)
+|+|+||++++|+.++ +++.+..++.+|+.+.+.+. .++++..++..+||+|||+++++++.... .
T Consensus 160 l~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~lig~gGt~~~la~~~~~~-~---------- 226 (496)
T PRK11031 160 LSMGCVTWLERYFKDRNLTQENFDAAEKAAREVLRPV--ADELREHGWQVCVGASGTVQALQEIMMAQ-G---------- 226 (496)
T ss_pred EeccchHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH--HHHHhhcCCCEEEEEChHHHHHHHHHHhc-C----------
Confidence 9999999999998765 57777888899999999753 34555556677999999999999875321 1
Q ss_pred CCCccccccCHHHHHHHHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHH
Q 008237 250 GGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSL 329 (573)
Q Consensus 250 ~~~~~~~~i~~~~l~~l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~gLReGll~~~l 329 (573)
.+ ..++.++++++++++..++.+ ++.+++||+++|+|+|+||++|+.++|+.+++++|+||++|||||++++++
T Consensus 227 ---~~-~~i~~~~l~~l~~~l~~~~~~--~~~~~~gl~~~Radii~~g~~Il~~i~~~~~~~~i~vs~~glREGl~~~~~ 300 (496)
T PRK11031 227 ---MD-ERITLAKLQQLKQRAIQCGRL--EELEIEGLTLERALVFPSGLAILIAIFEELNIESMTLAGGALREGLVYGML 300 (496)
T ss_pred ---CC-CcCCHHHHHHHHHHHhcCCHH--HHhcCCCCCccHHHHHHHHHHHHHHHHHHcCcCEEEECCchHHHHHHHHHH
Confidence 01 248999999999999999987 999999999999999999999999999999999999999999999999998
Q ss_pred hcccCCCCCccchhHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHh
Q 008237 330 AKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLH 409 (573)
Q Consensus 330 ~~~~~~~~~~~~~~~~s~~~l~~ry~~~~~~~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~Lh 409 (573)
.+.. ..|++..|+.+++.||++|. .|+++|+++|++|||+|++.|+++ +++++||+|||+||
T Consensus 301 ~~~~-----~~d~~~~s~~~l~~ry~~d~--~ha~~v~~~a~~Lf~~l~~~~~l~-----------~~~~~LL~~Aa~Lh 362 (496)
T PRK11031 301 HLPV-----EQDIRSRTLRNIQRRFQIDT--EQAQRVAKLADNFLQQVENEWHLE-----------PRSRELLISACQLH 362 (496)
T ss_pred hhhc-----ccchHHHHHHHHHHHcCcCH--HHHHHHHHHHHHHHHhhhhhcCCC-----------hHHHHHHHHHHHHH
Confidence 7631 34778889999999999987 899999999999999999999753 46789999999999
Q ss_pred hcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCcccccCCCHHHHHHHHHHHHHHHHhcc-c
Q 008237 410 NIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVILQQ-N 488 (573)
Q Consensus 410 diG~~i~~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hrk~~~~~~~~~~~~l~~~~~~~L~~iLRlA~~Ld~-s 488 (573)
|||++||+++||+||||||+|++ ++||||+|+.+||++++||||+.|+..++.+..++++.+.+|++|||||++||+ +
T Consensus 363 diG~~I~~~~~~~Hs~yiI~~s~-l~G~s~~E~~~iA~i~~~h~k~~~~~~~~~~~~l~~~~v~~L~~iLRLA~~Ld~~~ 441 (496)
T PRK11031 363 EIGLSVDFKQAPQHAAYLVRNLD-LPGFTPAQKKLLATLLLNQTNPVDLSSLHQQNALPPRVAERLCRLLRLAIIFASRR 441 (496)
T ss_pred hcCCccCCCccchHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCchhhhhhhhccCHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999998 999999999999999999999988776667777888889999999999999994 5
Q ss_pred cCCCCcceEEEEeCceeEEEEeeCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCceEEEE
Q 008237 489 DCVNLRGVDFFHSYEGFKLVIKEARDQPYLPGSSQPTLDNIEAELEKELEHFKKIFKQELLVV 551 (573)
Q Consensus 489 ~~~~i~~i~~~~~~~~~~L~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~f~~~fg~~l~i~ 551 (573)
+.++++++++.++++.++|.++.. |...+|+ + .+++++++++|+++ |.+|.+.
T Consensus 442 ~~~~i~~~~~~~~~~~l~l~~~~~------~~~~~~l-~--~~~l~~e~~~~~~~-~~~l~~~ 494 (496)
T PRK11031 442 RDDLLPEVTLQANDELLTLTLPQG------WLAQHPL-G--AEELEQESQWQSYV-HWPLEVE 494 (496)
T ss_pred CCCCCCceEEEEeCCEEEEEEChh------hhhhCcc-h--HHHHHHHHHHHHhC-CceEEEe
Confidence 678999999998878888888655 6677776 2 59999999999999 8888764
No 2
>PRK10854 exopolyphosphatase; Provisional
Probab=100.00 E-value=3.6e-103 Score=860.86 Aligned_cols=495 Identities=25% Similarity=0.383 Sum_probs=438.7
Q ss_pred CeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Q 008237 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (573)
+.+|+|||||||+||+|+++. ++.++++++.|++||||+|++.+|.|++++|+|++++|++|+++|++|+|+ ++++|
T Consensus 11 ~~~A~IDIGSNSirL~I~e~~-~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~~~~~~v~--~v~~v 87 (513)
T PRK10854 11 QEFAAVDLGSNSFHMVIARVV-DGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAERLQGFSPA--NVCIV 87 (513)
T ss_pred CEEEEEEeccchheEEEEEec-CCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eEEEE
Confidence 579999999999999999997 578999999999999999999999999999999999999999999999995 79999
Q ss_pred EehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEe
Q 008237 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVN 172 (573)
Q Consensus 93 ATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~Slp 172 (573)
||+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+||.+.++. .++++++||||||||+++++++++.+..|+|
T Consensus 88 ATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~-~~~~lvvDIGGGStEl~~~~~~~~~~~~S~~ 166 (513)
T PRK10854 88 GTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPE-KGRKLVIDIGGGSTELVIGENFEPILVESRR 166 (513)
T ss_pred ehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCC-CCCeEEEEeCCCeEEEEEecCCCeeEeEEEe
Confidence 999999999999999999999999999999999999999999998874 3568999999999999999999999999999
Q ss_pred hhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhcchhHHHHhcCCcEEEeehHHHHHHHHHHHcCCCCccccCCCCCCC
Q 008237 173 LGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDFGG 251 (573)
Q Consensus 173 lG~vrl~e~f~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~liG~gGt~~~la~~~~~~y~~~~~~~~~~~~~ 251 (573)
+|+||+++.|+.++ +++.+..++.+++.+.+...+|. .+..++..+||+|||+++++++....
T Consensus 167 lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~lig~gGT~r~la~i~~~~-------------- 230 (513)
T PRK10854 167 MGCVSFAQLYFPGGVISKENFQRARLAAAQKLETLAWQ--YRIQGWNVALGASGTIKAAHEVLVEM-------------- 230 (513)
T ss_pred cceeeHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHH--hhhcCCCEEEEechHHHHHHHHHHhC--------------
Confidence 99999999988765 57777888899999999754332 22334557999999999999976321
Q ss_pred CccccccCHHHHHHHHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHHhc
Q 008237 252 CKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSLAK 331 (573)
Q Consensus 252 ~~~~~~i~~~~l~~l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~gLReGll~~~l~~ 331 (573)
..+++.|+.++++++++++.+++.+ ++.+++||+++|+|+|+||++|+.++|+.+++++|+||+.|||||++++++.+
T Consensus 231 ~~~~~~i~~~~l~~l~~~l~~~~~~--~r~~~~gl~~~Rad~I~~g~~il~~i~~~~~~~~i~vs~~gLReGll~~~~~~ 308 (513)
T PRK10854 231 GEKDGLITPERLEMLVKEVLKHKNF--AALSLPGLSEERKTVFVPGLAILCGVFDALAIRELRLSDGALREGVLYEMEGR 308 (513)
T ss_pred CCCCCccCHHHHHHHHHHHHCCCHH--HHHhCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhh
Confidence 0123479999999999999999987 99999999999999999999999999999999999999999999999998754
Q ss_pred ccCCCCCccchhHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHHhccc-ccchhhhhhcccCcchHHHHHHHHHHhh
Q 008237 332 VFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDK-LYNNQVKLIASFEDKDLEYLEAACLLHN 410 (573)
Q Consensus 332 ~~~~~~~~~~~~~~s~~~l~~ry~~~~~~~ha~~V~~~a~~LFd~l~~~~~-l~~~~~~~~~~~~~~~r~lL~~Aa~Lhd 410 (573)
. ...|++.+|+++++.||++|. .|+++|+++|++|||+|++.|+ + +++++++||++||+|||
T Consensus 309 ~-----~~~d~~~~s~~~la~ry~~d~--~ha~~V~~~a~~LFd~l~~~h~~~----------~~~~~~~LL~~Aa~Lhd 371 (513)
T PRK10854 309 F-----RHQDIRSRTAKSLANHYNIDR--EQARRVLETTMQLYEQWREQNPKL----------AHPQLEALLKWAAMLHE 371 (513)
T ss_pred c-----ccccHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHhhhhhhccc----------CCHHHHHHHHHHHHHHh
Confidence 2 124888999999999999987 8999999999999999999984 2 24567899999999999
Q ss_pred cccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCcccccCCCHHHHHHHHHHHHHHHHhccccC
Q 008237 411 IGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVILQQNDC 490 (573)
Q Consensus 411 iG~~i~~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hrk~~~~~~~~~~~~l~~~~~~~L~~iLRlA~~Ld~s~~ 490 (573)
||++||+++||+||||||+|++ |+||||+|+.+||++||||||+.|+..++.+..++.+.+.+|++|||||++||+++.
T Consensus 372 iG~~I~~~~~~~Hs~yiI~~s~-l~G~s~~E~~~iA~i~ryh~k~~p~~~~~~~~~l~~~~~~~l~~iLRLA~~Ld~~~~ 450 (513)
T PRK10854 372 VGLNINHSGLHRHSAYILQNTD-LPGFNQEQQLMLATLVRYHRKAIKLDDLPRFTLFKKKQYLPLIQLLRLGVLLNNQRQ 450 (513)
T ss_pred cCCccCCCCcchhHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCChhhhhhhhcccHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998 999999999999999999999999887777788888888899999999999997775
Q ss_pred CC--CcceEEEEeCceeEEEEeeCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCceEEEEeecCC
Q 008237 491 VN--LRGVDFFHSYEGFKLVIKEARDQPYLPGSSQPTLDNIEAELEKELEHFKKIFKQELLVVGSSSS 556 (573)
Q Consensus 491 ~~--i~~i~~~~~~~~~~L~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~f~~~fg~~l~i~~~~~~ 556 (573)
++ +.+++++.+++.+.|.++.. |. .+..+| .|.+++++++|+++||+++++.-.+.+
T Consensus 451 ~~~~~~~v~~~~~~~~l~l~l~~~------~~-~~~~le--~~~~~~~~~~f~~vfg~~~~l~~~~~~ 509 (513)
T PRK10854 451 ATTTPPTLRLITDDSHWTLRFPHD------WF-SQNALV--LLDLEKEQEYWEDVTGWRLKIEEESTP 509 (513)
T ss_pred CCCCCCeEEEEEcCCEEEEEECcc------cc-ccCcHH--HHHHHHHHHHHHHHhCceEEEEecCch
Confidence 44 45677766666677777554 32 334455 599999999999999999999865544
No 3
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-93 Score=763.69 Aligned_cols=447 Identities=35% Similarity=0.511 Sum_probs=402.8
Q ss_pred CeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Q 008237 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (573)
+++|+||||||||||+|+++.+ +.++++++.|+.||||+|++.+|.|++++|+|+++||++|+++++.++++ ++++|
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~-~~~~~l~~~k~~vrLgegl~~~g~L~~eai~R~~~aL~~f~e~~~~~~~~--~v~~v 79 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITP-GSFQVLFREKRIVRLGEGLDATGNLSEEAIERALSALKRFAELLDGFGAE--EVRVV 79 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccC-CccchhhhhhhheehhcCccccCCcCHHHHHHHHHHHHHHHHHHhhCCCC--EEEEe
Confidence 5799999999999999999986 88999999999999999999999999999999999999999999999996 79999
Q ss_pred EehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEe
Q 008237 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVN 172 (573)
Q Consensus 93 ATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~Slp 172 (573)
||+|+|+|+|+++|+.+++++||++|+||||+|||||+|+||.++++. .++++++||||||||++++++.++....|+|
T Consensus 80 ATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~-~~~~lv~DIGGGStEl~~g~~~~~~~~~Sl~ 158 (492)
T COG0248 80 ATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPR-KGDGLVIDIGGGSTELVLGDNFEIGLLISLP 158 (492)
T ss_pred hhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCC-CCCEEEEEecCCeEEEEEecCCccceeEEee
Confidence 999999999999999999999999999999999999999999999985 5669999999999999999999999999999
Q ss_pred hhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhcchhHHHHhcCCcEEEeehHHHHHHHHHHH--cCCCCccccCCCCC
Q 008237 173 LGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVV--SGYDRDFVDNVGDF 249 (573)
Q Consensus 173 lG~vrl~e~f~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~liG~gGt~~~la~~~~--~~y~~~~~~~~~~~ 249 (573)
+|||||+++|+.++ ++..+...++++++..+++.++. +....+..+||+|||+|+++++.+ ..||+..+|
T Consensus 159 ~G~v~lt~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~vg~sGT~r~la~l~~~~~~y~~~~~~----- 231 (492)
T COG0248 159 LGCVRLTERFFPDDPISEENFAKARDAVREELEEIAKE--YRIAGWAGLVGTSGTIRALAKLHMAQGSYPLRVLH----- 231 (492)
T ss_pred cceEEeehhhcCCCCCCHHHHHHHHHHHHHHHHhhhHH--HHhhhhccEEEccHHHHHHHHHHHhcccCChhhcc-----
Confidence 99999999999874 68888999999999999875432 222345569999999999999864 457755544
Q ss_pred CCCccccccCHHHHHHHHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHH
Q 008237 250 GGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSL 329 (573)
Q Consensus 250 ~~~~~~~~i~~~~l~~l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~gLReGll~~~l 329 (573)
+|.|+.+++.++++++..++.+ ++.+++|++++|+|+|++|++|+.++|+.+++++|+||+.|||||++++++
T Consensus 232 -----~~~it~~~l~~~~~~l~~~~~~--~~~~~~gl~~~Ra~vi~~G~~il~a~~~~l~~~~~~vs~~glREG~l~~~l 304 (492)
T COG0248 232 -----GYEITAEELEKLLERLIRMTSE--ERLKLEGLSKDRADVILAGAAILEAVFEALSIERMIVSDGGLREGVLYDLL 304 (492)
T ss_pred -----CceEcHHHHHHHHHHHHhCChH--hHHhccCCChhhhHhhhhHHHHHHHHHHhcCcceEEeccccccchHHHHHh
Confidence 6899999999999999999987 999999999999999999999999999999999999999999999999998
Q ss_pred hcccCCCCCccchhHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHh
Q 008237 330 AKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLH 409 (573)
Q Consensus 330 ~~~~~~~~~~~~~~~~s~~~l~~ry~~~~~~~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~Lh 409 (573)
.+... .+++.+++.+++.+|.++. .|+.+|+++|.++|+|+.+.++. .+++..++ |+|||+||
T Consensus 305 ~~~~~-----~~~r~~~~~~~~~~~~~~~--~~~~~v~~~a~~l~~~~~~~~~~---------~~~~~~~~-l~~Aa~Lh 367 (492)
T COG0248 305 LRFEA-----EDIRKRSLLELALRYLIDL--AQAKRVAKLALELFDQLLALLKI---------DEEAEERL-LEAAAMLH 367 (492)
T ss_pred hhhhh-----hhhhccHHHHHHHHhhhhH--HhHhhHHHHHHHHHHHhhhcccc---------CCChHHHH-HHHHHHHH
Confidence 76532 2377789999999999877 89999999999999999987653 34555556 99999999
Q ss_pred hcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCcccccCCCHHHHHHHHHHHHHHHHhcccc
Q 008237 410 NIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVILQQND 489 (573)
Q Consensus 410 diG~~i~~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hrk~~~~~~~~~~~~l~~~~~~~L~~iLRlA~~Ld~s~ 489 (573)
|||++|||++||+||+|+|.|++ ++||||+|+.++|++++||+++.++...+.+.......+..|+++||+|..||+.+
T Consensus 368 ~iG~~i~~~~~~~hsayiI~~s~-l~Gf~~~e~~~lA~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~llrla~~L~~~~ 446 (492)
T COG0248 368 EIGLNISHSGHHKHSAYIIRNSD-LPGFSHEERLLLALLARYHRKAVKLKKLAPFSKKKLKSVRRLLGLLRLAVILDRAR 446 (492)
T ss_pred HhccccCcccHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHHHHHHHHHHcccc
Confidence 99999999999999999999998 99999999999999999999987776555442223377889999999999999999
Q ss_pred CCCCcc
Q 008237 490 CVNLRG 495 (573)
Q Consensus 490 ~~~i~~ 495 (573)
...+..
T Consensus 447 ~~~~~~ 452 (492)
T COG0248 447 QGDIEP 452 (492)
T ss_pred cCcCCc
Confidence 877643
No 4
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=100.00 E-value=7.5e-63 Score=508.46 Aligned_cols=295 Identities=33% Similarity=0.501 Sum_probs=269.5
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEEe
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (573)
+|+|||||||+||+|+++. ++.++++++.+.+||||++++.+|.|++++|++++++|++|++++++|+++ ++++|||
T Consensus 2 ~AvIDiGSNsirl~I~~~~-~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~~~~~v~--~i~~vaT 78 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGV-EGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELLRGFPVD--EVRAVAT 78 (300)
T ss_pred eEEEEecCCeeeEEEEEec-CCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eEEEEEc
Confidence 7999999999999999986 577999999999999999999999999999999999999999999999995 7999999
Q ss_pred hhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEehh
Q 008237 95 AAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLG 174 (573)
Q Consensus 95 sA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG 174 (573)
+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+|+.+.++.. +++++||||||||+++++++++.+++|+|+|
T Consensus 79 sa~R~A~N~~~~~~~i~~~tgi~i~visg~eEa~l~~~gv~~~~~~~--~~~v~DiGGGSte~~~~~~~~~~~~~Sl~lG 156 (300)
T TIGR03706 79 AALRDAKNGPEFLREAEAILGLPIEVISGEEEARLIYLGVAHTLPIA--DGLVVDIGGGSTELILGKDFEPGEGVSLPLG 156 (300)
T ss_pred HHHHcCCCHHHHHHHHHHHHCCCeEEeChHHHHHHHHHHHHhCCCCC--CcEEEEecCCeEEEEEecCCCEeEEEEEccc
Confidence 99999999999999999999999999999999999999999888653 3699999999999999999999999999999
Q ss_pred HHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhcchhHHHHhcCCcEEEeehHHHHHHHHHHHc--CCCCccccCCCCCCC
Q 008237 175 HVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVS--GYDRDFVDNVGDFGG 251 (573)
Q Consensus 175 ~vrl~e~f~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~liG~gGt~~~la~~~~~--~y~~~~~~~~~~~~~ 251 (573)
++||++.|...+ |+..+++.+++|+.+.+... ++++..+...+||+|||+++++++... .|+..
T Consensus 157 ~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~lig~gGt~~~la~~~~~~~~~~~~---------- 223 (300)
T TIGR03706 157 CVRLTEQFFPDGPISKKSLKQARKAAREELASL---KWLKKGGWRPLYGVGGTWRALARIHQAQHGYPLH---------- 223 (300)
T ss_pred eEEhHHhhCCCCCCCHHHHHHHHHHHHHHHHHh---HHHhhCCCCEEEEehHHHHHHHHHHHhcccCCCc----------
Confidence 999999998754 57788889999999998753 334444555799999999999998643 35433
Q ss_pred CccccccCHHHHHHHHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHH
Q 008237 252 CKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSL 329 (573)
Q Consensus 252 ~~~~~~i~~~~l~~l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~gLReGll~~~l 329 (573)
..|++.+++++|+++++++..++.+ ++.+.+|++++|+|+|+||++|+.++|+.+++++++||++|||||++++++
T Consensus 224 ~~~~~~l~~~~~~~~~~~l~~~~~~--~r~~~~gl~~~Rad~i~~g~~i~~~l~~~~~~~~i~vs~~glreGl~~~~~ 299 (300)
T TIGR03706 224 GLHGYTITAEGLLELLEELIKLSRE--ERLKLPGLSKDRADILPGGAAVLEELFRALGIEQMVFSRGGLREGVLYELL 299 (300)
T ss_pred CccCCEECHHHHHHHHHHHHcCCHH--HHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEECCchHHHHHHHhhc
Confidence 2456789999999999999999988 999999999999999999999999999999999999999999999998864
No 5
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=100.00 E-value=2.1e-56 Score=458.11 Aligned_cols=282 Identities=35% Similarity=0.583 Sum_probs=247.3
Q ss_pred EEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHH
Q 008237 28 LIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFV 107 (573)
Q Consensus 28 ~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl 107 (573)
+|++++ ++.++++++.+++||||++++.+|.|++++|+|++++|++|++++++|+|+ +|+||||+|+|+|+|+++|+
T Consensus 1 ~I~~~~-~~~~~~l~~~~~~vrLg~~~~~~g~i~~e~i~r~~~~L~~f~~~~~~~~v~--~i~~vATsA~R~A~N~~~~~ 77 (285)
T PF02541_consen 1 VIAEVK-DGKFKILEEEKEIVRLGEGVFETGRISEEAIERAIDALKRFKEILKDYGVE--KIRAVATSALREAKNSDEFL 77 (285)
T ss_dssp EEEEEE-TTEEEEEEEEEEE--TTTTHHHHSSB-HHHHHHHHHHHHHHHHHHHHTTGS--EEEEEEEHHHHHSTTHHHHH
T ss_pred CEEEeC-CCCeEEeeeceEEEEcccccccCCCcCHHHHHHHHHHHHHHHHHHHHCCCC--EEEEEhhHHHHhCcCHHHHH
Confidence 689998 567999999999999999999999999999999999999999999999995 79999999999999999999
Q ss_pred HHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHhhcCCC-
Q 008237 108 ECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCS- 186 (573)
Q Consensus 108 ~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~~~~- 186 (573)
++|+++||++|+||||+|||+|+|+||.+.+ .+.++++++||||||||+++++++++.++.|+|+|++++++.|...+
T Consensus 78 ~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l-~~~~~~lviDIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~~~~~~~ 156 (285)
T PF02541_consen 78 DRIKKETGIDIEIISGEEEARLSFLGVLSSL-PPDKNGLVIDIGGGSTELILFENGKVVFSQSLPLGAVRLTERFFKSDP 156 (285)
T ss_dssp HHHHHHHSS-EEEE-HHHHHHHHHHHHHHHS-TTTSSEEEEEEESSEEEEEEEETTEEEEEEEES--HHHHHHHHSGCSS
T ss_pred HHHHHHhCCceEEecHHHHHHHHHHHHHhhc-cccCCEEEEEECCCceEEEEEECCeeeEeeeeehHHHHHHHHHhccCc
Confidence 9999999999999999999999999999988 34567999999999999999999999999999999999999998765
Q ss_pred CCHHHHHHHHHHHHHHHHhcchhHHHHhcC-CcEEEeehHHHHHHHHHHHcCCCCccccCCCCCCCCccccccCHHHHHH
Q 008237 187 GNFEEVLKMREYVRMVILEFGLVEKVKESG-FEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDFGGCKRDWRLSRGELKG 265 (573)
Q Consensus 187 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~-~~~liG~gGt~~~la~~~~~~y~~~~~~~~~~~~~~~~~~~i~~~~l~~ 265 (573)
++..+.+.+++|+.+.+....+. +...+ ...++|++|+.++++..... ++ ..++.|+.++|++
T Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~-~~-------------~~~~~i~~~~l~~ 220 (285)
T PF02541_consen 157 PTAEELEKLREFIRKELEELKWE--FPKGGGTIRIIGTSGTIRALYPLKKI-HG-------------KEGYEITREDLEE 220 (285)
T ss_dssp -HHHHHHHHHHHHHHHHCTTHHH--HHHHCHHCEEECCCHHHHHHHHHHHH-TT-------------CSSCEEEHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH--hhhcCCceeeecHHHHHHHHHHHHHh-cC-------------CCCceECHHHHHH
Confidence 46677788999999999875432 22223 46789999999998876421 11 0047899999999
Q ss_pred HHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHHhc
Q 008237 266 IVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSLAK 331 (573)
Q Consensus 266 l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~gLReGll~~~l~~ 331 (573)
+++++.+++.+ ++.+++||+++|+|+|+||++|+.++|+.+++++++||+.|||||++++++.+
T Consensus 221 ~~~~l~~~~~e--e~~~~~gl~~~Ra~~i~~g~~i~~~l~~~~~~~~i~vs~~glreG~l~~~l~~ 284 (285)
T PF02541_consen 221 LLEKLSKMSPE--ERAKIPGLSPDRADIILPGALILKALLEAFGAEEIIVSDYGLREGLLYDMLLK 284 (285)
T ss_dssp HHHHHHTSSHH--HHHTSTTSHHCHHTTHHHHHHHHHHHHHHHTHSEEEEESEEHHHHHHHHHHHH
T ss_pred HHHHHHcCChH--HHHHccCCCHHHHHhHHHHHHHHHHHHHHcCCCEEEECCCchHHHHHHHHhcc
Confidence 99999999988 99999999999999999999999999999999999999999999999998864
No 6
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.66 E-value=4.8e-15 Score=150.55 Aligned_cols=155 Identities=23% Similarity=0.269 Sum_probs=122.8
Q ss_pred ccccccCCCCeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHc-
Q 008237 4 NTSYMQIPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSH- 82 (573)
Q Consensus 4 ~~~~~~~~~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~- 82 (573)
+|+-.+-..+++++|||||||+|++|++..+ +.+.+.+..+..+|+|. +.+ ++++.++|+.|.+.++.+
T Consensus 15 ~~~~~~~~~~~~~~iDiGSssi~~vv~~~~~-~~~~~~~~~~~~vr~G~-i~d--------i~~a~~~i~~~~~~ae~~~ 84 (267)
T PRK15080 15 NKTPVATESPLKVGVDLGTANIVLAVLDEDG-QPVAGALEWADVVRDGI-VVD--------FIGAVTIVRRLKATLEEKL 84 (267)
T ss_pred cCCCCCCCCCEEEEEEccCceEEEEEEcCCC-CEEEEEeccccccCCCE-Eee--------HHHHHHHHHHHHHHHHHHh
Confidence 4444344567899999999999999997653 35778888888999988 433 999999999999999887
Q ss_pred CCCcccEEEEEehhhhhcC---ChHHHHHHHHHHcCCcEE-EeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEE
Q 008237 83 NISRDHTRAVATAAVRAAE---NKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (573)
Q Consensus 83 ~v~~~~i~~vATsA~R~A~---N~~~fl~~i~~~tG~~i~-VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~ 158 (573)
|++ +..|+| +++.+. |+..+. ++.++.|+++. ++++. .|--.+++ .. ..+++|||||+|+++
T Consensus 85 g~~---i~~v~~-~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~-~A~a~~~~------~~--~~~vvDIGggtt~i~ 150 (267)
T PRK15080 85 GRE---LTHAAT-AIPPGTSEGDPRAII-NVVESAGLEVTHVLDEP-TAAAAVLG------ID--NGAVVDIGGGTTGIS 150 (267)
T ss_pred CCC---cCeEEE-EeCCCCCchhHHHHH-HHHHHcCCceEEEechH-HHHHHHhC------CC--CcEEEEeCCCcEEEE
Confidence 774 566777 788877 888877 66677899999 55544 44333221 11 269999999999999
Q ss_pred EeeCCeEEEEEEEehhHHHHHHhh
Q 008237 159 IGKRGKVVFCESVNLGHVSLSEKF 182 (573)
Q Consensus 159 ~~~~~~~~~~~SlplG~vrl~e~f 182 (573)
++.+|++.+..++|+|.-.+++..
T Consensus 151 v~~~g~~~~~~~~~~GG~~it~~I 174 (267)
T PRK15080 151 ILKDGKVVYSADEPTGGTHMSLVL 174 (267)
T ss_pred EEECCeEEEEecccCchHHHHHHH
Confidence 999999999999999999999865
No 7
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=98.90 E-value=1.1e-08 Score=111.22 Aligned_cols=149 Identities=26% Similarity=0.323 Sum_probs=88.0
Q ss_pred CeEEEEEecccceEEEEEEEeC--CCCEEEEEeeee--e--eeeccCCCcCCCCCHHHHHHHHHHHHHHHH-HHHHcCCC
Q 008237 13 TLFASIDMGTSSFKLLIIRAYP--NGKFLTIDTLKQ--P--VILGRDLSSSCSISTQSQARSVESLLMFRD-IIQSHNIS 85 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~--~~~~~~i~~~k~--~--vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~-~~~~~~v~ 85 (573)
.+..|||.||.+.|+.||+... .....++...+. + ....-|+..- .-+++.+...+.-|-.+.. ....-..+
T Consensus 8 ~y~vviDAGSsgsR~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~pgls~~-~~~~~~~~~~l~~ll~~a~~~ip~~~~~ 86 (434)
T PF01150_consen 8 KYGVVIDAGSSGSRVHVYKWRCRDNNSLPVVPLVEQSKPVFKKVEPGLSSF-ADNPEKAAESLQPLLDFAKSVIPKSQHS 86 (434)
T ss_dssp EEEEEEEEESSEEEEEEEEEEEEECCGCEEEEEEEEBEEHCCHHCCHHHHH-TTTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cEEEEEEcCCCCceEEEEEEecCCCccCCccccceeccchhhcccchHHHh-CCChHHHHHHHHHHHHHHHhhCCHHHhC
Confidence 3457999999999999999964 122333322222 1 1111122110 0123444444444444432 22222222
Q ss_pred cccEEEEEehhhhhc--CChHHHHHHHHHH----cCCc-----EEEeChHHHHHHHHhhhhccC---CCC------CCce
Q 008237 86 RDHTRAVATAAVRAA--ENKDEFVECVREK----VGFE-----VDVLTGEQEAKFVYMGVLQFL---PVF------DRLV 145 (573)
Q Consensus 86 ~~~i~~vATsA~R~A--~N~~~fl~~i~~~----tG~~-----i~VIsg~eEA~l~~~gv~~~~---~~~------~~~~ 145 (573)
..-|.+.||+.||.- .+++.+++.+++. +++. ++||||+||+.|.|++|-.-+ ... ....
T Consensus 87 ~tpi~l~ATAGmRlL~~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~t~ 166 (434)
T PF01150_consen 87 STPIYLGATAGMRLLPEEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSNTV 166 (434)
T ss_dssp HEEEEEEE-HHHHTHHHHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS-E
T ss_pred CeeEEEecccccEECChhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHHHHHHHhCccccccccCCCCceE
Confidence 235889999999964 5678888888763 3443 799999999999999996433 211 2347
Q ss_pred EEEEeCCCceEEEEeeC
Q 008237 146 LSVDIGGGSTEFVIGKR 162 (573)
Q Consensus 146 lviDIGGGStEl~~~~~ 162 (573)
-++|+|||||+|+..-+
T Consensus 167 g~lDlGGaStQIaf~~~ 183 (434)
T PF01150_consen 167 GALDLGGASTQIAFEPS 183 (434)
T ss_dssp EEEEE-SSEEEEEEEET
T ss_pred EEEecCCcceeeeeccC
Confidence 89999999999997655
No 8
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=98.69 E-value=1.5e-06 Score=87.02 Aligned_cols=146 Identities=21% Similarity=0.307 Sum_probs=90.7
Q ss_pred EEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCcccEEEEEehh
Q 008237 18 IDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQS-HNISRDHTRAVATAA 96 (573)
Q Consensus 18 IDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~-~~v~~~~i~~vATsA 96 (573)
|||||+||++++.+.. ++.+-.. .+=.+-..+|.|.+ ++.+-..|+.+++.++. .+.+..+ .+++..+
T Consensus 2 ~dig~~~ik~v~~~~~-~~~~~~~-------~~~~~~~~~g~I~d--~~~~~~~l~~l~~~a~~~~g~~~~~-vvisVP~ 70 (239)
T TIGR02529 2 VDLGTANIVIVVLDED-GQPVAGV-------MQFADVVRDGIVVD--FLGAVEIVRRLKDTLEQKLGIELTH-AATAIPP 70 (239)
T ss_pred CCcccceEEEEEEecC-CCEEEEE-------ecccccccCCeEEE--hHHHHHHHHHHHHHHHHHhCCCcCc-EEEEECC
Confidence 7999999999998775 3422111 12223344455543 33444555555554432 3443212 2344333
Q ss_pred hhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhHH
Q 008237 97 VRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (573)
Q Consensus 97 ~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~v 176 (573)
-=...+++.+.+.+ +..|+++..+.-+-=|-..+++ . ...+++|||||+|.++++++|++.++.++|+|.-
T Consensus 71 ~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~~~----~----~~~~vvDiGggtt~i~i~~~G~i~~~~~~~~GG~ 141 (239)
T TIGR02529 71 GTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAVLQ----I----KNGAVVDVGGGTTGISILKKGKVIYSADEPTGGT 141 (239)
T ss_pred CCCcccHHHHHHHH-HHcCCceEEEeehHHHHHHHhc----C----CCcEEEEeCCCcEEEEEEECCeEEEEEeeecchH
Confidence 33334455555544 4579998776655544333322 1 1259999999999999999999999999999999
Q ss_pred HHHHhhc
Q 008237 177 SLSEKFG 183 (573)
Q Consensus 177 rl~e~f~ 183 (573)
.+++.+.
T Consensus 142 ~it~~Ia 148 (239)
T TIGR02529 142 HMSLVLA 148 (239)
T ss_pred HHHHHHH
Confidence 9998764
No 9
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=98.41 E-value=1.5e-06 Score=92.34 Aligned_cols=147 Identities=20% Similarity=0.295 Sum_probs=95.0
Q ss_pred CeEEEEEecccceEEEEEEEeC-CCC--EEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHH-H--HHcCCCc
Q 008237 13 TLFASIDMGTSSFKLLIIRAYP-NGK--FLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDI-I--QSHNISR 86 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~-~~~--~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~-~--~~~~v~~ 86 (573)
++=.|||-||...|+-|+.... +|. +.++...-..-.++-|+..-+. +++.....+.-|-+|++- . +.++=
T Consensus 9 kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~-nP~~a~~~l~pLlefA~~~IPk~~h~~-- 85 (501)
T KOG1386|consen 9 KYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFAD-NPEGASVYLTPLLEFAKEHIPKEKHKE-- 85 (501)
T ss_pred eEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhcc-ChhhhHHHHHHHHHHHHhhCCHhhcCC--
Confidence 3346899999999999998764 333 2222222122234444433222 456666666666666553 1 22232
Q ss_pred ccEEEEEehhhhhc--CChHHHHHHHHHHc----CCc-----EEEeChHHHHHHHHhhhhccC---CC------CCCceE
Q 008237 87 DHTRAVATAAVRAA--ENKDEFVECVREKV----GFE-----VDVLTGEQEAKFVYMGVLQFL---PV------FDRLVL 146 (573)
Q Consensus 87 ~~i~~vATsA~R~A--~N~~~fl~~i~~~t----G~~-----i~VIsg~eEA~l~~~gv~~~~---~~------~~~~~l 146 (573)
..+++.||+.||-- .+.+.+++-+...+ ++. ++||||+||+.|+|.++-..+ .. ..+..-
T Consensus 86 Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~LG~f~~~~~~~~~~~T~G 165 (501)
T KOG1386|consen 86 TPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLLGRFGKKNRWDSRKETFG 165 (501)
T ss_pred CCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHHHhccccCcccCCcceee
Confidence 35889999999975 56666666655433 332 799999999999999986432 11 224577
Q ss_pred EEEeCCCceEEEEeeC
Q 008237 147 SVDIGGGSTEFVIGKR 162 (573)
Q Consensus 147 viDIGGGStEl~~~~~ 162 (573)
++|+||.||+|+..-.
T Consensus 166 ~lDlGGAS~QItFe~~ 181 (501)
T KOG1386|consen 166 ALDLGGASTQITFEPP 181 (501)
T ss_pred eEecCCceeEEEEecC
Confidence 9999999999997654
No 10
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.39 E-value=1.4e-05 Score=86.72 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=36.8
Q ss_pred CceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHhh
Q 008237 143 RLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (573)
Q Consensus 143 ~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (573)
...+++|||||+|+++++++|.+.++.++|+|.-.+++..
T Consensus 204 ~gv~vvDiGggtTdisv~~~G~l~~~~~i~~GG~~it~dI 243 (420)
T PRK09472 204 LGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDI 243 (420)
T ss_pred cCeEEEEeCCCceEEEEEECCEEEEEeeeechHHHHHHHH
Confidence 3589999999999999999999999999999999888765
No 11
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=98.38 E-value=7.5e-07 Score=92.54 Aligned_cols=147 Identities=20% Similarity=0.209 Sum_probs=93.9
Q ss_pred CeEEEEEecccceEEEEEEEeCC--CC-EEEEEeeeeeeeeccCCCcCC-CCCHHHHHHHHHHHHHHHHHHHHcCCCccc
Q 008237 13 TLFASIDMGTSSFKLLIIRAYPN--GK-FLTIDTLKQPVILGRDLSSSC-SISTQSQARSVESLLMFRDIIQSHNISRDH 88 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~--~~-~~~i~~~k~~vrLg~~~~~~g-~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~ 88 (573)
++..+||-||...|+.||..+.. +. ++.-++.-.++.-|-..+.+. +=..++++.+++.-+.|.-. +.+..+ -
T Consensus 67 ~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~vP~-~~~~kT--P 143 (453)
T KOG1385|consen 67 QYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAFVPR-EHWKKT--P 143 (453)
T ss_pred EEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhhCCH-hHhccC--c
Confidence 45689999999999999998753 22 233223223443343333321 11223333333333333311 222444 4
Q ss_pred EEEEEehhhhhc--CChHHHHHHHHHHcC---------CcEEEeChHHHHHHHHhhhhccC---CCC-CCceEEEEeCCC
Q 008237 89 TRAVATAAVRAA--ENKDEFVECVREKVG---------FEVDVLTGEQEAKFVYMGVLQFL---PVF-DRLVLSVDIGGG 153 (573)
Q Consensus 89 i~~vATsA~R~A--~N~~~fl~~i~~~tG---------~~i~VIsg~eEA~l~~~gv~~~~---~~~-~~~~lviDIGGG 153 (573)
|.+-||+.+|-- .-++.+++.|++.+- =.|.|++|.+|.-|.|..+...+ .-+ ....-++|+|||
T Consensus 144 i~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGG 223 (453)
T KOG1385|consen 144 IVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGG 223 (453)
T ss_pred eEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeeeehhhhhcccCCCCCCceEEEEcCCc
Confidence 888999999975 446788888888763 23889999999999998875332 211 245789999999
Q ss_pred ceEEEEeeC
Q 008237 154 STEFVIGKR 162 (573)
Q Consensus 154 StEl~~~~~ 162 (573)
||++++.-.
T Consensus 224 STQi~f~p~ 232 (453)
T KOG1385|consen 224 STQITFLPT 232 (453)
T ss_pred eEEEEEecC
Confidence 999998653
No 12
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=98.20 E-value=3.5e-07 Score=80.30 Aligned_cols=106 Identities=22% Similarity=0.274 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC-------------CchhhhHHH
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK-------------GYHKQSCHI 427 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~~-------------~~~khs~yi 427 (573)
.|+..|+.+|..|++.+.. +.++.++.+||+|||||+...+. .|...|+++
T Consensus 3 ~Hs~~V~~~a~~l~~~~~~----------------~~~~~~l~~aaLlHDiGk~~~~~~~~~~~~~~~~~~~H~~~g~~~ 66 (122)
T PF01966_consen 3 EHSLRVAELAERLADRLGL----------------EEDRELLRIAALLHDIGKIPTPDFIEKKPEERGKFYRHEEIGAEI 66 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTH----------------HHHHHHHHHHHHHTTTTHHSTHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCC----------------chhHHHHHHHHHHHhcCCCCCchHHHHhHhhhchhhhhHHHHHHH
Confidence 6999999999999887653 13468999999999999999774 688899999
Q ss_pred HHcCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCcccccCCCHHHHHHHHHHHHHHHHhcc
Q 008237 428 IMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVILQQ 487 (573)
Q Consensus 428 I~ns~~l~G~s~~E~~~iA~ia~~hrk~~~~~~~~~~~~l~~~~~~~L~~iLRlA~~Ld~ 487 (573)
+.+.....|+. ...++.++++|.........+.. ........++.++++||.||.
T Consensus 67 ~~~~~~~~~~~---~~~i~~~i~~H~~~~~~~~~~~~--~~~~~~~~~~~iv~~aD~l~a 121 (122)
T PF01966_consen 67 LKEFLKELGLP---IEIIANAIRYHHGPWNGEGKPKE--EDYEPISLEARIVKLADRLDA 121 (122)
T ss_dssp HHHHHHHHCHC---HHHHHHHHHHTTTHHTSHHCHHC--HSCSTSSHHHHHHHHHHHHHH
T ss_pred HHHhhhhcchH---HHHHHHHHHHhcccccccccccc--cCCCCCCHHHHHHHHHHHHhC
Confidence 98875223334 67899999999765442110000 011223457889999999873
No 13
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.12 E-value=0.00014 Score=77.62 Aligned_cols=161 Identities=16% Similarity=0.268 Sum_probs=93.4
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHH-HcCCCcccEEEEE
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQ-SHNISRDHTRAVA 93 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~-~~~v~~~~i~~vA 93 (573)
+.+|||||.++++++.+..+++.++++.....+.+ ++. +|.|.+ ++.+.+++++..+.++ ..+++..++ ++|
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~---gi~-~G~I~d--~~~~~~~i~~al~~~e~~~~~~i~~v-~~~ 74 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSR---GIK-KGVIND--IEAAVGSIQRAIEAAELMAGCEIRSV-IVS 74 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC---Ccc-CcEEEc--HHHHHHHHHHHHHHHHHHhCCcccEE-EEE
Confidence 68999999999999999875566888876665533 433 465544 3334444444433322 134442222 222
Q ss_pred e--hhhhh---------c---CChHHHHHHHHHHc-------------------------------------CCcEEEeC
Q 008237 94 T--AAVRA---------A---ENKDEFVECVREKV-------------------------------------GFEVDVLT 122 (573)
Q Consensus 94 T--sA~R~---------A---~N~~~fl~~i~~~t-------------------------------------G~~i~VIs 122 (573)
. ..++- . -+.+++-+.++.+. ..++.++.
T Consensus 75 v~g~~v~~~~~~~~i~~~~~~i~~~di~~~~~~~~~~~~~~~~~il~~~~~~~~vD~~~~~~~p~g~~~~~l~~~v~lva 154 (371)
T TIGR01174 75 ISGAHIKSQNSIGVVAIKDKEVTQEDIERVLETAKAVAIPNDQEILHVIPQEYILDDQEGIKNPLGMSGVRLEVEVHIIT 154 (371)
T ss_pred EcccceEEEeeeEEEEcCCCeeCHHHHHHHHHHhhcccCCCCCEEEEEeceeEEECCCCCcCCCCCCeeeEEEEEEEEEE
Confidence 1 11110 0 22333333333221 12234444
Q ss_pred hHHHHHHHHhhhhc--------------------cCC-CCCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHh
Q 008237 123 GEQEAKFVYMGVLQ--------------------FLP-VFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (573)
Q Consensus 123 g~eEA~l~~~gv~~--------------------~~~-~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~ 181 (573)
...+.-..+.-+.. ..+ ..+...+++|||||+|.++++.+|.+.+..++|+|.-.+++.
T Consensus 155 ~~~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~~~~i~~GG~~it~~ 234 (371)
T TIGR01174 155 GSSTILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRYTKVIPIGGNHITKD 234 (371)
T ss_pred EEHHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEEEeeecchHHHHHHH
Confidence 44444444333321 001 112357999999999999999999999999999999888875
Q ss_pred h
Q 008237 182 F 182 (573)
Q Consensus 182 f 182 (573)
.
T Consensus 235 i 235 (371)
T TIGR01174 235 I 235 (371)
T ss_pred H
Confidence 4
No 14
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.02 E-value=0.0015 Score=68.82 Aligned_cols=162 Identities=20% Similarity=0.267 Sum_probs=92.8
Q ss_pred CeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccE-EE
Q 008237 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHT-RA 91 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i-~~ 91 (573)
+.+..|||||+++|++..+.. ++.++++.....++. .+....|.+.+ ++.+.++|+...+ ..++...++ .+
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~-~~~~~v~~~~~~~~p--~~~i~~g~i~d--~~~~~~~l~~~~~---~~~~~~k~v~~a 74 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRS-GDRYKLEHYAVEPLP--AGIFTEGHIVE--YQAVAEALKELLS---ELGINTKKAATA 74 (348)
T ss_pred CcEEEEEeccCeEEEEEEEec-CCceEEEEEEEEECC--CCcccCCCccC--HHHHHHHHHHHHH---HcCCCcceEEEE
Confidence 457899999999999998854 566887766655543 33344454432 2334455554433 234432222 12
Q ss_pred EEehh-----hhh--cCChHHHHHHH---------------------------------------------------HHH
Q 008237 92 VATAA-----VRA--AENKDEFVECV---------------------------------------------------REK 113 (573)
Q Consensus 92 vATsA-----~R~--A~N~~~fl~~i---------------------------------------------------~~~ 113 (573)
+.++. +.- .-+.+++-+.| -+.
T Consensus 75 lp~~~~~~r~~~~p~~i~~~el~~~i~~e~~~~ip~~~~e~~~D~~~~~~~~~~~~~~~~v~v~a~~~~~v~~~~~~~~~ 154 (348)
T TIGR01175 75 VPGSAVITKVIPVPAGLDERELEFAVYIEASHYIPYPIEEVSLDFEKLGLKANNPESTVQVLLAATRKEVVDSRLHALKL 154 (348)
T ss_pred ecCCeeEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCHHHheeeeEEccCCCCCCCceEEEEEEEecHHHHHHHHHHHHH
Confidence 21111 000 01222222222 123
Q ss_pred cCCcEEEeChHHHHHHHHhhhhc-cCC-C-CCC-ceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHhh
Q 008237 114 VGFEVDVLTGEQEAKFVYMGVLQ-FLP-V-FDR-LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (573)
Q Consensus 114 tG~~i~VIsg~eEA~l~~~gv~~-~~~-~-~~~-~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (573)
.|+++..|+-+-=|....+.+.. .+. . ... +.+++|||+++|.++++++|++.+..++|+|.-.+++..
T Consensus 155 aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~r~i~~G~~~i~~~i 227 (348)
T TIGR01175 155 AGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFTREVPFGTRQLTSEL 227 (348)
T ss_pred cCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEEEEeechHHHHHHHH
Confidence 45555555544444433332111 111 1 122 389999999999999999999999999999999988765
No 15
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=97.89 E-value=0.00087 Score=71.95 Aligned_cols=40 Identities=28% Similarity=0.501 Sum_probs=37.2
Q ss_pred ceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHhhc
Q 008237 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (573)
Q Consensus 144 ~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (573)
+.+++|||||+|.++++.+|.+.++.++|+|.-.+|+..-
T Consensus 204 Gv~lIDiG~GTTdIai~~~G~l~~~~~ipvgG~~vT~DIa 243 (418)
T COG0849 204 GVALIDIGGGTTDIAIYKNGALRYTGVIPVGGDHVTKDIA 243 (418)
T ss_pred CeEEEEeCCCcEEEEEEECCEEEEEeeEeeCccHHHHHHH
Confidence 5899999999999999999999999999999999998653
No 16
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=97.78 E-value=7.1e-05 Score=66.43 Aligned_cols=112 Identities=21% Similarity=0.166 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhccccc-----------CCCCchhhhHHHHH
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFT-----------SKKGYHKQSCHIIM 429 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i-----------~~~~~~khs~yiI~ 429 (573)
.|+..|+.+|..+++.... +..++..+.+||+|||+|... ....|.++++.++.
T Consensus 5 ~Hs~~v~~~~~~~~~~~~~---------------~~~~~~~l~~aaLlHDig~~~~~~~~~~~~~~~~~~h~~~g~~~~~ 69 (145)
T cd00077 5 EHSLRVAQLARRLAEELGL---------------SEEDIELLRLAALLHDIGKPGTPDAITEEESELEKDHAIVGAEILR 69 (145)
T ss_pred HHHHHHHHHHHHHHHHhCc---------------CHHHHHHHHHHHHHHhcCCccCccccCHHHHHHHHhhHHHHHHHHH
Confidence 6999999999988766532 113457899999999999976 46788899999987
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCcccccCCCHHHHHHHHHHHHHHHHhccccC
Q 008237 430 NGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVILQQNDC 490 (573)
Q Consensus 430 ns~~l~G~s~~E~~~iA~ia~~hrk~~~~~~~~~~~~l~~~~~~~L~~iLRlA~~Ld~s~~ 490 (573)
+.. ..+..+....++..+..+|....+....... ........++.++++|+.++....
T Consensus 70 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~AD~~~~~~~ 127 (145)
T cd00077 70 ELL-LEEVIKLIDELILAVDASHHERLDGLGYPDG--LKGEEITLEARIVKLADRLDALRR 127 (145)
T ss_pred Hhh-hcccccccHHHHHHHHHHcccCCCCCCCCCC--CCcccCCHHHHHHHHHHHHHHHhc
Confidence 643 4444454555555555555544333221111 112223567889999999986664
No 17
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=97.77 E-value=0.0001 Score=64.01 Aligned_cols=101 Identities=20% Similarity=0.180 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC----------CCchhhhHHHHHc
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK----------KGYHKQSCHIIMN 430 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~----------~~~~khs~yiI~n 430 (573)
.|+..|+.++..+.+++.. .++..+.+||+|||+|....+ ..|..++++++.+
T Consensus 7 ~H~~~v~~~~~~l~~~~~~-----------------~~~~~~~~a~LlHDig~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 69 (124)
T smart00471 7 EHSLRVAQLAAALAEELGL-----------------LDIELLLLAALLHDIGKPGTPDSFLVKTSVLEDHHFIGAEILLE 69 (124)
T ss_pred HHHHHHHHHHHHHHHHcCh-----------------HHHHHHHHHHHHHcccCccCCHHHhcCccHHHHhHHHHHHHHHh
Confidence 6999999999988766642 123578999999999999975 7899999999977
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCCcccccCCCHHHHHHHHHHHHHHHHhccccC
Q 008237 431 GDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVILQQNDC 490 (573)
Q Consensus 431 s~~l~G~s~~E~~~iA~ia~~hrk~~~~~~~~~~~~l~~~~~~~L~~iLRlA~~Ld~s~~ 490 (573)
.++++.+......++++|....... .......++.++++|+.++..+.
T Consensus 70 ----~~~~~~~~~~~~~~i~~h~~~~~~~--------~~~~~~~~~~il~~aD~~~~~~~ 117 (124)
T smart00471 70 ----EEEPRILEEILATAILSHHERPDGL--------RGEPITLEARIVKVADRLDALRR 117 (124)
T ss_pred ----CCCCHHHHHHHhhHHHHhccccCCC--------CCCcCCHHHHHHHHHHHHHHHhc
Confidence 4678888888777888987654320 01112347788999999887654
No 18
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=97.50 E-value=0.0022 Score=66.91 Aligned_cols=153 Identities=21% Similarity=0.336 Sum_probs=83.8
Q ss_pred EEEEecccceEEEEEEEeCCCC------EEEEEee-eeeeeeccCC----------------CcCCCCCHHHHHHHHHHH
Q 008237 16 ASIDMGTSSFKLLIIRAYPNGK------FLTIDTL-KQPVILGRDL----------------SSSCSISTQSQARSVESL 72 (573)
Q Consensus 16 AvIDIGSNsirL~I~e~~~~~~------~~~i~~~-k~~vrLg~~~----------------~~~g~ls~e~i~r~~~~L 72 (573)
-.||+||++++.-+- ..|- .--+++. ++.+-+|+.- -.+|.|++ .+.+-.-|
T Consensus 4 igIDLGT~~t~i~~~---~~Giv~~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D--~~~~~~~l 78 (326)
T PF06723_consen 4 IGIDLGTSNTRIYVK---GKGIVLNEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIAD--YEAAEEML 78 (326)
T ss_dssp EEEEE-SSEEEEEET---TTEEEEEEES-EEEETTT--EEEESHHHHTTTTS-GTTEEEE-SEETTEESS--HHHHHHHH
T ss_pred eEEecCcccEEEEEC---CCCEEEecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEEEccccCCcccC--HHHHHHHH
Confidence 479999999877321 1221 1112222 2444555432 13466653 34445667
Q ss_pred HHHHHHHHHc-CCCcccEE-EEEehhhhhcCChHHHHHHHHHHcC-CcEEEeChHHHHHHHHhhhhccCCCCC-CceEEE
Q 008237 73 LMFRDIIQSH-NISRDHTR-AVATAAVRAAENKDEFVECVREKVG-FEVDVLTGEQEAKFVYMGVLQFLPVFD-RLVLSV 148 (573)
Q Consensus 73 ~~f~~~~~~~-~v~~~~i~-~vATsA~R~A~N~~~fl~~i~~~tG-~~i~VIsg~eEA~l~~~gv~~~~~~~~-~~~lvi 148 (573)
+.|-+.+... .+. +.+ +++.-+==....+..+.+.++. .| -+|.+|+.. ....+|+- ++..+ ...+++
T Consensus 79 ~~~l~k~~~~~~~~--~p~vvi~vP~~~T~verrA~~~a~~~-aGa~~V~li~ep---~AaAiGaG--l~i~~~~g~miV 150 (326)
T PF06723_consen 79 RYFLKKALGRRSFF--RPRVVICVPSGITEVERRALIDAARQ-AGARKVYLIEEP---IAAAIGAG--LDIFEPRGSMIV 150 (326)
T ss_dssp HHHHHHHHTSS-SS----EEEEEE-SS--HHHHHHHHHHHHH-TT-SEEEEEEHH---HHHHHHTT----TTSSS-EEEE
T ss_pred HHHHHHhccCCCCC--CCeEEEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEecch---HHHHhcCC--CCCCCCCceEEE
Confidence 7777666543 222 222 2332221122344567887765 55 568888765 44444543 33322 347999
Q ss_pred EeCCCceEEEEeeCCeEEEEEEEehhHHHHHHh
Q 008237 149 DIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (573)
Q Consensus 149 DIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~ 181 (573)
|||||+||+.+..-|.+..+.|+++|.-.+.+.
T Consensus 151 DIG~GtTdiavislggiv~s~si~~gG~~~Dea 183 (326)
T PF06723_consen 151 DIGGGTTDIAVISLGGIVASRSIRIGGDDIDEA 183 (326)
T ss_dssp EE-SS-EEEEEEETTEEEEEEEES-SHHHHHHH
T ss_pred EECCCeEEEEEEECCCEEEEEEEEecCcchhHH
Confidence 999999999999999999999999999877653
No 19
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.38 E-value=0.0021 Score=69.15 Aligned_cols=152 Identities=22% Similarity=0.317 Sum_probs=88.1
Q ss_pred EEEEEecccceEEEEEEEeC-C--C-----CEEEEEeeeeeeeecc----CCCcCCCCCHHHHHHHHHHHHHHHHHHHHc
Q 008237 15 FASIDMGTSSFKLLIIRAYP-N--G-----KFLTIDTLKQPVILGR----DLSSSCSISTQSQARSVESLLMFRDIIQSH 82 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~-~--~-----~~~~i~~~k~~vrLg~----~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~ 82 (573)
-..|||||.+..|++.++.= + + +++++++ +.+-=++ -+.....|..+++.+.++. +|++ -
T Consensus 8 SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dk--ev~yrS~i~fTPl~~~~~ID~~~i~~~V~~--ey~~----A 79 (475)
T PRK10719 8 SVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDK--EIIYRSPIYFTPLLKQGEIDEAAIKELIEE--EYQK----A 79 (475)
T ss_pred EEEEeccCceEEEEEEEEEEecccccccCceEEEeee--EEEEecCceecCCCCCccccHHHHHHHHHH--HHHH----c
Confidence 47899999999999998762 1 1 2444443 2211111 1224467888888877664 3332 1
Q ss_pred CCCcccEE---EEEehhhhhcCChHHHHHHHHHH--------cCCcEEEeChHHHHHHHHhhhhc-cCC-CCCCceEEEE
Q 008237 83 NISRDHTR---AVATAAVRAAENKDEFVECVREK--------VGFEVDVLTGEQEAKFVYMGVLQ-FLP-VFDRLVLSVD 149 (573)
Q Consensus 83 ~v~~~~i~---~vATsA~R~A~N~~~fl~~i~~~--------tG~~i~VIsg~eEA~l~~~gv~~-~~~-~~~~~~lviD 149 (573)
|+++..|. .+-|...-...|....+++.-.. .|+++ |+.+..+|... .+. ..+...+++|
T Consensus 80 gi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~l-------e~iva~~ASg~avLseEke~gVa~ID 152 (475)
T PRK10719 80 GIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDL-------ESIIAGKGAGAQTLSEERNTRVLNID 152 (475)
T ss_pred CCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccH-------HHhhhHHHhhHHHhhhhccCceEEEE
Confidence 33322221 11222222334555666653322 34444 33333332221 111 1234589999
Q ss_pred eCCCceEEEEeeCCeEEEEEEEehhHHHHHHh
Q 008237 150 IGGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (573)
Q Consensus 150 IGGGStEl~~~~~~~~~~~~SlplG~vrl~e~ 181 (573)
||||+|.+.+|++|++.++.++|+|.-.++..
T Consensus 153 IGgGTT~iaVf~~G~l~~T~~l~vGG~~IT~D 184 (475)
T PRK10719 153 IGGGTANYALFDAGKVIDTACLNVGGRLIETD 184 (475)
T ss_pred eCCCceEEEEEECCEEEEEEEEecccceEEEC
Confidence 99999999999999999999999999777754
No 20
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=97.23 E-value=0.0042 Score=61.62 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCCchhh
Q 008237 344 WRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQ 423 (573)
Q Consensus 344 ~~s~~~l~~ry~~~~~~~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~~~~~kh 423 (573)
.+.+..+++.+..+....|+.+|..+|..|-.+-.+-++ -+.++|..||+|||||..-.+.+..+.
T Consensus 41 ~~~a~~~~~~~l~~~~~~Hs~RV~~~a~~ia~~e~~~~~--------------~D~evl~lAALLHDIG~~~~~~~~~~~ 106 (228)
T TIGR03401 41 VKFAQEYAKARLPPETYNHSLRVYYYGLAIARDQFPEWD--------------LSDETWFLTCLLHDIGTTDENMTATKM 106 (228)
T ss_pred HHHHHHHHHhhCCHhhhHHHHHHHHHHHHHHHHhccccC--------------CCHHHHHHHHHHHhhccccccCCcccC
Confidence 344455555443333448999999999875322111112 134689999999999985433322222
Q ss_pred hH---------HHHHcCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCcccccCCCHHHHHHHHHHHHHHHHhcc
Q 008237 424 SC---------HIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVILQQ 487 (573)
Q Consensus 424 s~---------yiI~ns~~l~G~s~~E~~~iA~ia~~hrk~~~~~~~~~~~~l~~~~~~~L~~iLRlA~~Ld~ 487 (573)
+| .++... .|++..+...+..++..|+...... . . ..++.|++.|+.||.
T Consensus 107 ~fe~~ga~~A~~~L~~~---~G~~~~~~~~V~~aI~~H~~~~~~~--~----~-----~~e~~lvq~Ad~lDa 165 (228)
T TIGR03401 107 SFEFYGGILALDVLKEQ---TGANQDQAEAVAEAIIRHQDLGVDG--T----I-----TTLGQLLQLATIFDN 165 (228)
T ss_pred CHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHhCCCCCC--C----c-----CHHHHHHHHHHHHhH
Confidence 22 233322 3899999999999998895421110 0 1 236889999999985
No 21
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.16 E-value=0.0082 Score=63.30 Aligned_cols=40 Identities=38% Similarity=0.553 Sum_probs=34.1
Q ss_pred ceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHhhc
Q 008237 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (573)
Q Consensus 144 ~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (573)
..+++|||..+|+++++++|++.++.++++|.-.+++...
T Consensus 181 ~~~lvdiG~~~t~~~i~~~g~~~f~R~i~~G~~~l~~~i~ 220 (340)
T PF11104_consen 181 TVALVDIGASSTTVIIFQNGKPIFSRSIPIGGNDLTEAIA 220 (340)
T ss_dssp EEEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHH
T ss_pred eEEEEEecCCeEEEEEEECCEEEEEEEEeeCHHHHHHHHH
Confidence 4699999999999999999999999999999999998654
No 22
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=97.15 E-value=0.0023 Score=60.31 Aligned_cols=117 Identities=19% Similarity=0.236 Sum_probs=68.7
Q ss_pred HHHHHhCccc-cchhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC-CCchhhhHH
Q 008237 349 RLAMRFNNKK-RVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK-KGYHKQSCH 426 (573)
Q Consensus 349 ~l~~ry~~~~-~~~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~-~~~~khs~y 426 (573)
.+.++|..+. ...|+.+|+.+|..|-..+.. .+. +.+..++.+||+|||||+...+ ..|..-++.
T Consensus 3 ~ll~~~~~~~~~~~Hs~~Va~~A~~ia~~~~~-~~~------------~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~ 69 (164)
T TIGR00295 3 RLLDKYKCDESVRRHCLAVARVAMELAENIRK-KGH------------EVDMDLVLKGALLHDIGRARTHGFEHFVKGAE 69 (164)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHhcc-ccc------------cCCHHHHHHHHHHhcCCcccCCCCCHHHHHHH
Confidence 3445554443 126999999999987655431 111 1235789999999999998765 468888999
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHHHHh-cCCCCCCCcccccCCCHH---HHHHHHHHHHHHHHhcc
Q 008237 427 IIMNGDHLYGYSTDEIKLIALLTRFH-RKKFPRSHHAFLEEFPEQ---KFRVLCAIVRLSVILQQ 487 (573)
Q Consensus 427 iI~ns~~l~G~s~~E~~~iA~ia~~h-rk~~~~~~~~~~~~l~~~---~~~~L~~iLRlA~~Ld~ 487 (573)
++.+. |++.. ++.++..| ....|......+ .+++. .....+.|+.+||.|..
T Consensus 70 iL~~~----g~~~~----i~~iI~~H~~~g~p~~~~~~~-~l~~~~~~p~t~ea~IV~~AD~l~~ 125 (164)
T TIGR00295 70 ILRKE----GVDEK----IVRIAERHFGAGINAEEASKL-GLPPKDYMPETLEEKIVAHADNLIM 125 (164)
T ss_pred HHHHc----CCCHH----HHHHHHHHhCCCCchhhHhhc-CCCcccCCCCCHHHHHHHHHHHhcc
Confidence 88754 45532 22233344 443332110000 11110 01246779999999964
No 23
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=97.07 E-value=0.014 Score=61.48 Aligned_cols=89 Identities=19% Similarity=0.234 Sum_probs=60.9
Q ss_pred EEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEE
Q 008237 90 RAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (573)
Q Consensus 90 ~~vATsA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (573)
++|-|--.---.+....+...-+..|+++ .+++...=|-+.| |. ... .+...+|+|||||+|+++++..+.+...
T Consensus 97 ~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~-g~--~~~-~~~~~lVvDiGggttdvsvv~~g~~~~~ 172 (336)
T PRK13928 97 RIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGA-GL--DIS-QPSGNMVVDIGGGTTDIAVLSLGGIVTS 172 (336)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHc-CC--ccc-CCCeEEEEEeCCCeEEEEEEEeCCEEEe
Confidence 34444333333456677777778889985 5665555554443 32 111 1234899999999999999998988888
Q ss_pred EEEehhHHHHHHhh
Q 008237 169 ESVNLGHVSLSEKF 182 (573)
Q Consensus 169 ~SlplG~vrl~e~f 182 (573)
.++++|.-.+++..
T Consensus 173 ~~~~lGG~did~~i 186 (336)
T PRK13928 173 SSIKVAGDKFDEAI 186 (336)
T ss_pred CCcCCHHHHHHHHH
Confidence 89999998887754
No 24
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=96.87 E-value=0.028 Score=60.73 Aligned_cols=152 Identities=23% Similarity=0.314 Sum_probs=98.0
Q ss_pred EEEEEecccceEEEEEEEeC---CC-----CEEEEEeeeeeeeecc----CCCcCCCCCHHHHHHHHHHHHHHHHHHHHc
Q 008237 15 FASIDMGTSSFKLLIIRAYP---NG-----KFLTIDTLKQPVILGR----DLSSSCSISTQSQARSVESLLMFRDIIQSH 82 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~---~~-----~~~~i~~~k~~vrLg~----~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~ 82 (573)
-..|||||.+..|++.++.= .+ ++.+++ |+.+-=+. -+.....|..+++.+.++. +|++ -
T Consensus 5 SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~d--keViYrS~I~fTPl~~~~~ID~~al~~iv~~--eY~~----A 76 (473)
T PF06277_consen 5 SVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVD--KEVIYRSPIYFTPLLSQTEIDAEALKEIVEE--EYRK----A 76 (473)
T ss_pred EEEEeecCCceeEEEEEeEEEeccCCCccceEEEec--cEEEecCCccccCCCCCCccCHHHHHHHHHH--HHHH----c
Confidence 36899999999999988651 11 234443 22221111 1223467778887776653 3433 2
Q ss_pred CCCcccE----EEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhcc-CC-CCCCceEEEEeCCCce
Q 008237 83 NISRDHT----RAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQF-LP-VFDRLVLSVDIGGGST 155 (573)
Q Consensus 83 ~v~~~~i----~~vATsA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~~-~~-~~~~~~lviDIGGGSt 155 (573)
|+.+++| .++.-++.|+ +|++++++.+....|==| --=--.=|+-+...|.-.. +. ......+=+|||||.|
T Consensus 77 gi~p~~I~TGAVIITGETArK-eNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTt 155 (473)
T PF06277_consen 77 GITPEDIDTGAVIITGETARK-ENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTT 155 (473)
T ss_pred CCCHHHCccccEEEecchhhh-hhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCce
Confidence 5544332 1222244444 799999999999887332 2333456888888876422 21 1234578899999999
Q ss_pred EEEEeeCCeEEEEEEEehhH
Q 008237 156 EFVIGKRGKVVFCESVNLGH 175 (573)
Q Consensus 156 El~~~~~~~~~~~~SlplG~ 175 (573)
-+++|++|++..+..|.+|.
T Consensus 156 N~avf~~G~v~~T~cl~IGG 175 (473)
T PF06277_consen 156 NIAVFDNGEVIDTACLDIGG 175 (473)
T ss_pred eEEEEECCEEEEEEEEeecc
Confidence 99999999999999999996
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=96.83 E-value=0.022 Score=59.65 Aligned_cols=89 Identities=22% Similarity=0.246 Sum_probs=56.5
Q ss_pred EEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEE
Q 008237 90 RAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (573)
Q Consensus 90 ~~vATsA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (573)
.+|.|.-.---+...+.+.++.+..|++. .+++... ...++...... ....++|+|+|||.|+++.+..|.+...
T Consensus 102 ~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep~---AAa~a~g~~~~-~~~~~lVvDiG~gttdvs~v~~g~~~~~ 177 (335)
T PRK13930 102 RIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPM---AAAIGAGLPVT-EPVGNMVVDIGGGTTEVAVISLGGIVYS 177 (335)
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccHH---HHHHhcCCCcC-CCCceEEEEeCCCeEEEEEEEeCCEEee
Confidence 33444433333334455555667788875 4554333 22222211111 1234799999999999999999998888
Q ss_pred EEEehhHHHHHHhh
Q 008237 169 ESVNLGHVSLSEKF 182 (573)
Q Consensus 169 ~SlplG~vrl~e~f 182 (573)
...++|...+++..
T Consensus 178 ~~~~lGG~~id~~l 191 (335)
T PRK13930 178 ESIRVAGDEMDEAI 191 (335)
T ss_pred cCcCchhHHHHHHH
Confidence 88999998888754
No 26
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=96.83 E-value=0.027 Score=59.32 Aligned_cols=117 Identities=23% Similarity=0.262 Sum_probs=69.2
Q ss_pred cCCCCC-HHHHHHHHHHHHHHHHHHH-HcCCCccc-EEEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHH
Q 008237 56 SSCSIS-TQSQARSVESLLMFRDIIQ-SHNISRDH-TRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVY 131 (573)
Q Consensus 56 ~~g~ls-~e~i~r~~~~L~~f~~~~~-~~~v~~~~-i~~vATsA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~ 131 (573)
.+|.+. .+.++. .|+.+...+. ..+.+... -.+++..+.-...+++.+.+ .-+..|+++ .+++..-=|-+.|
T Consensus 67 ~~G~I~d~d~~~~---~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~ 142 (335)
T PRK13929 67 KDGVIADYDMTTD---LLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGA 142 (335)
T ss_pred CCCccCCHHHHHH---HHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhc
Confidence 345553 344443 4444444332 34543221 22344334334445556666 555679885 5665554444432
Q ss_pred hhhhccCCC-CCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHh
Q 008237 132 MGVLQFLPV-FDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (573)
Q Consensus 132 ~gv~~~~~~-~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~ 181 (573)
| ++. ....++|+|||||+|+++.+..+.+..+.++++|.-.+++.
T Consensus 143 -g----~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~~~~~GG~~id~~ 188 (335)
T PRK13929 143 -D----LPVDEPVANVVVDIGGGTTEVAIISFGGVVSCHSIRIGGDQLDED 188 (335)
T ss_pred -C----CCcCCCceEEEEEeCCCeEEEEEEEeCCEEEecCcCCHHHHHHHH
Confidence 2 221 22458999999999999999777788888999998888764
No 27
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.74 E-value=0.012 Score=59.29 Aligned_cols=130 Identities=16% Similarity=0.191 Sum_probs=81.3
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEEe
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (573)
+..||+||.|++.++++ + + +++..... +.+.. .+..++++++. +++.+.+..++..++.
T Consensus 2 ~lGIDiGtts~K~vl~d-~--g--~il~~~~~---------~~~~~----~~~~~~~l~~~---~~~~~~~~~~i~~i~~ 60 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME-D--G--KVIGYKWL---------DTTPV----IEETARAILEA---LKEAGIGLEPIDKIVA 60 (248)
T ss_pred EEEEEcChhheEEEEEc-C--C--EEEEEEEe---------cCCCC----HHHHHHHHHHH---HHHcCCChhheeEEEE
Confidence 46799999999999996 3 4 44544433 11111 22233444443 4455665556766665
Q ss_pred hhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEE---EEEEE
Q 008237 95 AAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV---FCESV 171 (573)
Q Consensus 95 sA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~---~~~Sl 171 (573)
+.-+.. ++.. .+ .. ..|.---..|+....|. . -.|+||||..|-++.+++|++. .....
T Consensus 61 Tg~~~~-----~v~~----~~---~~---~~ei~~~~~g~~~~~~~--~-~~vidiGgqd~k~i~~~~g~~~~~~~n~~c 122 (248)
T TIGR00241 61 TGYGRH-----KVGF----AD---KI---VTEISCHGKGANYLAPE--A-RGVIDIGGQDSKVIKIDDGKVDDFTMNDKC 122 (248)
T ss_pred ECCCcc-----cccc----cC---Cc---eEEhhHHHHHHHHHCCC--C-CEEEEecCCeeEEEEECCCcEeeeeecCcc
Confidence 444332 1110 01 11 23555666777776663 2 3699999999999999999877 66667
Q ss_pred ehhHHHHHHhhc
Q 008237 172 NLGHVSLSEKFG 183 (573)
Q Consensus 172 plG~vrl~e~f~ 183 (573)
..|+-++.|...
T Consensus 123 a~Gtg~f~e~~a 134 (248)
T TIGR00241 123 AAGTGRFLEVTA 134 (248)
T ss_pred cccccHHHHHHH
Confidence 889999998764
No 28
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.65 E-value=0.14 Score=52.69 Aligned_cols=71 Identities=25% Similarity=0.335 Sum_probs=55.1
Q ss_pred HcCCcEEEeChHHHHHHHHhhhh-ccCCCCCC--ceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHhhc
Q 008237 113 KVGFEVDVLTGEQEAKFVYMGVL-QFLPVFDR--LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (573)
Q Consensus 113 ~tG~~i~VIsg~eEA~l~~~gv~-~~~~~~~~--~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (573)
..|+++.|++=+.=|-+..+... +.+...+. ..+++|||+-||++.+..+|++.+....|+|.--|++.+.
T Consensus 160 ~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly~r~~~~g~~Qlt~~i~ 233 (354)
T COG4972 160 LAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILYTREVPVGTDQLTQEIQ 233 (354)
T ss_pred HcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeeeEeeccCcHHHHHHHHH
Confidence 45999999998888877766632 22221111 2469999999999999999999999999999999998653
No 29
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=96.57 E-value=0.043 Score=57.61 Aligned_cols=89 Identities=22% Similarity=0.248 Sum_probs=57.0
Q ss_pred EEEEehhhhhcCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEE
Q 008237 90 RAVATAAVRAAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (573)
Q Consensus 90 ~~vATsA~R~A~N~~~fl~~i~~~tG~~-i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (573)
.+|-|.-.---++..+.+..+-+..|++ +.+++..--|-|.| |. ... .+..++|+|+|||+|+++.+..+.+...
T Consensus 100 ~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~-g~--~~~-~~~~~lVvDiG~gttdvs~v~~~~~~~~ 175 (333)
T TIGR00904 100 RIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGA-GL--PVE-EPTGSMVVDIGGGTTEVAVISLGGIVVS 175 (333)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhc-CC--ccc-CCceEEEEEcCCCeEEEEEEEeCCEEec
Confidence 3444443322333344466666777888 45666665555543 22 111 2235799999999999999976667777
Q ss_pred EEEehhHHHHHHhh
Q 008237 169 ESVNLGHVSLSEKF 182 (573)
Q Consensus 169 ~SlplG~vrl~e~f 182 (573)
.+.++|.-.+++..
T Consensus 176 ~~~~lGG~did~~l 189 (333)
T TIGR00904 176 RSIRVGGDEFDEAI 189 (333)
T ss_pred CCccchHHHHHHHH
Confidence 78889988887754
No 30
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=96.35 E-value=0.074 Score=55.79 Aligned_cols=88 Identities=23% Similarity=0.249 Sum_probs=55.5
Q ss_pred EEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEE
Q 008237 91 AVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCE 169 (573)
Q Consensus 91 ~vATsA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~ 169 (573)
+|-|.-.---.++...+...-+..|++. .+++...-|-+.| |. ... .+..++|+|+|||.|+++.+..+.+....
T Consensus 99 ~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~-g~--~~~-~~~~~lvvDiGggttdvs~v~~~~~~~~~ 174 (334)
T PRK13927 99 VVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGA-GL--PVT-EPTGSMVVDIGGGTTEVAVISLGGIVYSK 174 (334)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHc-CC--ccc-CCCeEEEEEeCCCeEEEEEEecCCeEeeC
Confidence 3444333233345556666667778874 4444444443332 22 111 12347999999999999999766677777
Q ss_pred EEehhHHHHHHhh
Q 008237 170 SVNLGHVSLSEKF 182 (573)
Q Consensus 170 SlplG~vrl~e~f 182 (573)
+.++|.-.+++.+
T Consensus 175 ~~~lGG~~id~~l 187 (334)
T PRK13927 175 SVRVGGDKFDEAI 187 (334)
T ss_pred CcCChHHHHHHHH
Confidence 8899988888755
No 31
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=96.34 E-value=0.013 Score=56.01 Aligned_cols=142 Identities=25% Similarity=0.321 Sum_probs=84.0
Q ss_pred CCCeEEEEEecccceEEEEEEEeCCCCE-EEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHH-HHcCCCccc
Q 008237 11 PQTLFASIDMGTSSFKLLIIRAYPNGKF-LTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDII-QSHNISRDH 88 (573)
Q Consensus 11 ~~~~~AvIDIGSNsirL~I~e~~~~~~~-~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~-~~~~v~~~~ 88 (573)
..+++-.+|+|+-++-..|.+- ++.+ -....+...||=|--++ .-.+++..++.++-+ +++|+.
T Consensus 27 ~sk~~vGVDLGT~~iV~~vlD~--d~~Pvag~~~~advVRDGiVvd---------f~eaveiVrrlkd~lEk~lGi~--- 92 (277)
T COG4820 27 ESKLWVGVDLGTCDIVSMVLDR--DGQPVAGCLDWADVVRDGIVVD---------FFEAVEIVRRLKDTLEKQLGIR--- 92 (277)
T ss_pred cCceEEEeecccceEEEEEEcC--CCCeEEEEehhhhhhccceEEe---------hhhHHHHHHHHHHHHHHhhCeE---
Confidence 3478899999999998888864 4543 33444545555443322 234456666666654 345662
Q ss_pred EEEEEehhhhhc---CChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCe
Q 008237 89 TRAVATAAVRAA---ENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGK 164 (573)
Q Consensus 89 i~~vATsA~R~A---~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~ 164 (573)
+.=-+|+ +--- -|....++-|+ -.|+++ .+|+...-|.+. +.+ +++.|+|||||.|.|+++++|+
T Consensus 93 ~tha~ta-iPPGt~~~~~ri~iNViE-SAGlevl~vlDEPTAaa~v-------L~l--~dg~VVDiGGGTTGIsi~kkGk 161 (277)
T COG4820 93 FTHAATA-IPPGTEQGDPRISINVIE-SAGLEVLHVLDEPTAAADV-------LQL--DDGGVVDIGGGTTGISIVKKGK 161 (277)
T ss_pred eeecccc-CCCCccCCCceEEEEeec-ccCceeeeecCCchhHHHH-------hcc--CCCcEEEeCCCcceeEEEEcCc
Confidence 2222332 2111 12223333333 357775 466665543322 333 2379999999999999999999
Q ss_pred EEEEEEEehhHHH
Q 008237 165 VVFCESVNLGHVS 177 (573)
Q Consensus 165 ~~~~~SlplG~vr 177 (573)
++++--=|-|.--
T Consensus 162 Viy~ADEpTGGtH 174 (277)
T COG4820 162 VIYSADEPTGGTH 174 (277)
T ss_pred EEEeccCCCCcee
Confidence 9988766666543
No 32
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.33 E-value=0.017 Score=64.21 Aligned_cols=93 Identities=13% Similarity=0.053 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC---CchhhhHHHHHcCCCCCCC
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---GYHKQSCHIIMNGDHLYGY 437 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~~---~~~khs~yiI~ns~~l~G~ 437 (573)
.|+..|+.+|..| +..+|++ ...+..|++|||||+.+.+. +|..-+++++...+ +
T Consensus 332 ~Hs~~VA~lA~~L----A~~lgld--------------~~~a~~AGLLHDIGK~~~~e~~~~H~~~Ga~ll~~~~----~ 389 (514)
T TIGR03319 332 QHSIEVAHLAGIM----AAELGED--------------VKLAKRAGLLHDIGKAVDHEVEGSHVEIGAELAKKYK----E 389 (514)
T ss_pred HHHHHHHHHHHHH----HHHhCcC--------------HHHHHHHHHHHhcCcccchhhcccHHHHHHHHHHHcC----C
Confidence 6999999999875 4444432 24577899999999986543 56777788886553 3
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcccccCCCHHHHHHHHHHHHHHHHhccccCCC
Q 008237 438 STDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVILQQNDCVN 492 (573)
Q Consensus 438 s~~E~~~iA~ia~~hrk~~~~~~~~~~~~l~~~~~~~L~~iLRlA~~Ld~s~~~~ 492 (573)
+ ..+...++||+...++. ..++.++.+|+.|+.++.+.
T Consensus 390 ~----~~V~~aI~~HH~~~~~~-------------~~~a~IV~~AD~lsa~rpga 427 (514)
T TIGR03319 390 S----PEVVNAIAAHHGDVEPT-------------SIEAVLVAAADALSAARPGA 427 (514)
T ss_pred C----HHHHHHHHHhCCCCCCC-------------CHHHHHHHHHHHhcCCCCCC
Confidence 3 34666666776432110 23677888899988877544
No 33
>PRK12704 phosphodiesterase; Provisional
Probab=96.32 E-value=0.018 Score=63.94 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC---CCchhhhHHHHHcCCCCCCC
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK---KGYHKQSCHIIMNGDHLYGY 437 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~---~~~~khs~yiI~ns~~l~G~ 437 (573)
.|+..|+.+|..| +...|+. ...+..|++|||||+..++ ..|...++.++...+ +
T Consensus 338 ~Hs~~Va~lA~~l----A~~lgld--------------~~~a~~AgLLHDIGK~~~~e~~~~H~~iGa~il~~~~----~ 395 (520)
T PRK12704 338 QHSIEVAHLAGLM----AAELGLD--------------VKLAKRAGLLHDIGKALDHEVEGSHVEIGAELAKKYK----E 395 (520)
T ss_pred HHHHHHHHHHHHH----HHHhCcC--------------HHHHHHHHHHHccCcCccccccCCHHHHHHHHHHHcC----C
Confidence 5999999999865 4334431 2457799999999998765 457788888887653 3
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcccccCCCHHHHHHHHHHHHHHHHhccccCCC
Q 008237 438 STDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVILQQNDCVN 492 (573)
Q Consensus 438 s~~E~~~iA~ia~~hrk~~~~~~~~~~~~l~~~~~~~L~~iLRlA~~Ld~s~~~~ 492 (573)
+ ..+..++.+|+...+.. ..++.|+.+|++|+..+.+.
T Consensus 396 ~----~~v~~aI~~HHe~~~~~-------------~~~a~IV~~ADaLsa~Rpga 433 (520)
T PRK12704 396 S----PVVINAIAAHHGDEEPT-------------SIEAVLVAAADAISAARPGA 433 (520)
T ss_pred C----HHHHHHHHHcCCCCCCC-------------CHHHHHHHHHHHHhCcCCCC
Confidence 3 34667777777532210 13677899999999887543
No 34
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=96.23 E-value=0.018 Score=46.35 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC-----CCchhhhHHHHHcCCCCC
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK-----KGYHKQSCHIIMNGDHLY 435 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~-----~~~~khs~yiI~ns~~l~ 435 (573)
.|+..|+.+|..| .+..++ + ...+.+||+|||||+...+ ..|...+++++...
T Consensus 7 ~H~~~v~~~a~~l----a~~~~~-----------~---~~~l~~AalLHDiG~~~~~~~~~~~~H~~~g~~~l~~~---- 64 (80)
T TIGR00277 7 QHSLEVAKLAEAL----ARELGL-----------D---VELARRGALLHDIGKPITREGVIFESHAVVGAEIARKY---- 64 (80)
T ss_pred HHHHHHHHHHHHH----HHHcCC-----------C---HHHHHHHHHHHccCCcccchHHHHHchHHHHHHHHHHc----
Confidence 6888999988865 333332 1 2458899999999998864 56778888887644
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 008237 436 GYSTDEIKLIALLTRFHR 453 (573)
Q Consensus 436 G~s~~E~~~iA~ia~~hr 453 (573)
|+.. .+..++++|.
T Consensus 65 ~~~~----~~~~~I~~Hh 78 (80)
T TIGR00277 65 GEPL----EVIDIIAEHH 78 (80)
T ss_pred CCCH----HHHHHHHHHc
Confidence 4443 4455556664
No 35
>PRK12705 hypothetical protein; Provisional
Probab=96.06 E-value=0.032 Score=61.49 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC---CchhhhHHHHHcCCCCCCC
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---GYHKQSCHIIMNGDHLYGY 437 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~~---~~~khs~yiI~ns~~l~G~ 437 (573)
.|+..|+.+|..| +...|+ + ..+...|++|||||..+.+. .|..-+++++... ||
T Consensus 326 ~HSl~VA~lA~~L----A~~lGl-----------d---~d~a~~AGLLHDIGK~ie~e~~~~H~~iGaeLlkk~----~~ 383 (508)
T PRK12705 326 SHSLEVAHLAGII----AAEIGL-----------D---PALAKRAGLLHDIGKSIDRESDGNHVEIGAELARKF----NE 383 (508)
T ss_pred HHHHHHHHHHHHH----HHHcCc-----------C---HHHHHHHHHHHHcCCcchhhhcccHHHHHHHHHHhc----CC
Confidence 5999999999875 433343 2 24567899999999998764 4666688888654 45
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcccccCCCHHHHHHHHHHHHHHHHhccccCCC
Q 008237 438 STDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVILQQNDCVN 492 (573)
Q Consensus 438 s~~E~~~iA~ia~~hrk~~~~~~~~~~~~l~~~~~~~L~~iLRlA~~Ld~s~~~~ 492 (573)
++ .+...+.+|+...... ...+.|+.+||+|+..+.+.
T Consensus 384 p~----~Vv~aI~~HHe~~~~~-------------~~~a~IVaiADaLSaaRpGa 421 (508)
T PRK12705 384 PD----EVINAIASHHNKVNPE-------------TVYSVLVQIADALSAARPGA 421 (508)
T ss_pred CH----HHHHHHHHhCCCCCCC-------------CHHHHHHHHHHHHcCCCCCC
Confidence 44 3456666776433211 12567899999999877654
No 36
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=95.90 E-value=0.05 Score=56.88 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=69.0
Q ss_pred HHHHHHHHHhCccc-cchhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC-Cchh
Q 008237 345 RSVVRLAMRFNNKK-RVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK-GYHK 422 (573)
Q Consensus 345 ~s~~~l~~ry~~~~-~~~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~~-~~~k 422 (573)
..+.++..+|..+. ...|..+|+++|..|-+++ ++ +..++.+||+|||||..-.+. +|..
T Consensus 173 ee~l~Ll~k~~~~e~l~~Hs~rVa~lA~~LA~~~----~~--------------D~~ll~aAALLHDIGK~k~~~~~H~~ 234 (339)
T PRK12703 173 DQCLDLLKKYGASDLLIRHVKTVYKLAMRIADCI----NA--------------DRRLVAAGALLHDIGRTKTNGIDHAV 234 (339)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHc----CC--------------CHHHHHHHHHHHhcccccccCCCHHH
Confidence 33456666664432 2379999999999864332 21 246888999999999987654 6777
Q ss_pred hhHHHHHcCCCCCCCCHHHHHHHHHHHHHhc-CCCCCCCcccccCCCHH---HHHHHHHHHHHHHHhcccc
Q 008237 423 QSCHIIMNGDHLYGYSTDEIKLIALLTRFHR-KKFPRSHHAFLEEFPEQ---KFRVLCAIVRLSVILQQND 489 (573)
Q Consensus 423 hs~yiI~ns~~l~G~s~~E~~~iA~ia~~hr-k~~~~~~~~~~~~l~~~---~~~~L~~iLRlA~~Ld~s~ 489 (573)
-++.++... ||+.. ++.++..|. ...+...... ..+++. -...-+.|+..||.|....
T Consensus 235 ~Ga~iL~e~----G~~e~----i~~iIe~H~g~G~~~~~~~~-~gL~~~~~~P~TLEakIV~dADrL~~~~ 296 (339)
T PRK12703 235 AGAEILRKE----NIDDR----VVSIVERHIGAGITSEEAQK-LGLPVKDYVPETIEEMIVAHADNLFAGD 296 (339)
T ss_pred HHHHHHHHC----CCCHH----HHHHHHHHhccCCCcchhhc-cCCccccCCCCCHHHHHHHHHHHHhcCC
Confidence 787777643 56643 333334443 3233211000 001110 0012466899999997655
No 37
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=95.84 E-value=0.018 Score=60.89 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC--------------------CCc
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK--------------------KGY 420 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~--------------------~~~ 420 (573)
.|+..|+.+|..| +..+++ ++ ..+..|++|||||+...+ ..|
T Consensus 199 ~HSl~VA~~A~~L----A~~~g~-----------d~---~~a~~AGLLHDIGK~~~~~~~~~~~~~~~~~~~~~~~~~~H 260 (342)
T PRK07152 199 KHCLRVAQLAAEL----AKKNNL-----------DP---KKAYYAGLYHDITKEWDEEKHRKFLKKYLKDVKNLPWYVLH 260 (342)
T ss_pred HHHHHHHHHHHHH----HHHhCc-----------CH---HHHHHHHHHHHhhccCCHHHHHHHHHhcCCchhhcchHHHh
Confidence 7999999999976 333332 21 568899999999996532 236
Q ss_pred hhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCcccccCCCHHHHHHHHHHHHHHHHhccccC
Q 008237 421 HKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVILQQNDC 490 (573)
Q Consensus 421 ~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hrk~~~~~~~~~~~~l~~~~~~~L~~iLRlA~~Ld~s~~ 490 (573)
..-+++++.+. .||+..+ ++..++||..... .+..++.++.+|+.++..|.
T Consensus 261 ~~~Ga~ll~~~---~~~p~~~---i~~aI~~Hh~~~~-------------~~~~l~~iV~lAD~l~~~R~ 311 (342)
T PRK07152 261 QYVGALWLKHV---YGIDDEE---ILNAIRNHTSLAE-------------EMSTLDKIVYVADKIEPGRK 311 (342)
T ss_pred HHHHHHHHHHH---cCCCcHH---HHHHHHhccCCCC-------------CcCHHHHHHHhhhhcccCCC
Confidence 66677766543 4565433 5666777764221 02347889999999997653
No 38
>PRK00106 hypothetical protein; Provisional
Probab=95.78 E-value=0.039 Score=61.13 Aligned_cols=93 Identities=11% Similarity=0.056 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC---CchhhhHHHHHcCCCCCCC
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---GYHKQSCHIIMNGDHLYGY 437 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~~---~~~khs~yiI~ns~~l~G~ 437 (573)
.|+-.|+.+|..| +..+|+. ..++..|++|||||+.+.+. .|..-++.++... |+
T Consensus 353 ~HSv~VA~lA~~l----A~~lgld--------------~e~a~~AGLLHDIGK~v~~e~~g~Ha~iGa~ll~~~----~~ 410 (535)
T PRK00106 353 RHSVEVGKLAGIL----AGELGEN--------------VALARRAGFLHDMGKAIDREVEGSHVEIGMEFARKY----KE 410 (535)
T ss_pred HHHHHHHHHHHHH----HHHhCCC--------------HHHHHHHHHHHhccCccCccccCChHHHHHHHHHHc----CC
Confidence 7888888888864 4444431 25799999999999998754 4777778887544 34
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcccccCCCHHHHHHHHHHHHHHHHhccccCCC
Q 008237 438 STDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVILQQNDCVN 492 (573)
Q Consensus 438 s~~E~~~iA~ia~~hrk~~~~~~~~~~~~l~~~~~~~L~~iLRlA~~Ld~s~~~~ 492 (573)
++ .+...+.+|+...+.. ..++.++.+||.|+..+.+.
T Consensus 411 ~~----~v~~aI~~HH~~~~~~-------------s~~a~IV~~AD~lsa~Rpga 448 (535)
T PRK00106 411 HP----VVVNTIASHHGDVEPE-------------SVIAVIVAAADALSSARPGA 448 (535)
T ss_pred CH----HHHHHHHHhCCCCCCC-------------ChHHHHHHHHHHhccCCCCC
Confidence 43 2566666776533221 13688899999998888554
No 39
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=95.78 E-value=0.013 Score=56.67 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=49.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCc--chHHHHHHHHHHhhcccccCCCCchhhhHHHHH
Q 008237 357 KKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFED--KDLEYLEAACLLHNIGHFTSKKGYHKQSCHIIM 429 (573)
Q Consensus 357 ~~~~~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~--~~r~lL~~Aa~LhdiG~~i~~~~~~khs~yiI~ 429 (573)
|-...|++-|+.-|+.||+-|... |..+.. +.++..+ +...+.-.+|+|||||..++-++|+.||+++-+
T Consensus 56 DHG~vHa~Iva~~Al~i~~lL~~~-Gv~ps~--v~dg~gd~eD~~vivlLga~LHDIGnsVHRd~H~~~sa~La~ 127 (269)
T COG3294 56 DHGPVHARIVANSALAIYKLLLEK-GVKPSG--VTDGVGDEEDSPVIVLLGAYLHDIGNSVHRDDHELYSAVLAL 127 (269)
T ss_pred CCCceeeeeccchHHHHHHHHHhc-CCCccc--ccccCCchhhhhHHHHHHHHHHhccchhccccHHHHhHHHhH
Confidence 334479999999999999999754 222211 0011111 223577889999999999999999999998753
No 40
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=95.59 E-value=0.022 Score=53.65 Aligned_cols=85 Identities=20% Similarity=0.162 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHH---HHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccC----------------CCCch
Q 008237 361 KAGAQCASIAKDIF---EGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTS----------------KKGYH 421 (573)
Q Consensus 361 ~ha~~V~~~a~~LF---d~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~----------------~~~~~ 421 (573)
.|...|+..|..|. ..+.... +.+.++++.+||+|||||+.-. ...|.
T Consensus 3 ~H~~~v~~~a~~l~~~~~~~~~~~-------------~~~~~~~~~~~~~lHDiGK~~~~FQ~~~~~~~~~~~~~~~~H~ 69 (177)
T TIGR01596 3 EHLLDVAAVAEKLKNLDIVIADLI-------------GKLLRELLDLLALLHDIGKINPGFQAKLMKAYKRGRRVASRHS 69 (177)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHH-------------hhHHHHHHHHHHHHccCccCCHHHHHHhhcccccccCCCCCHH
Confidence 57778888887664 2222221 2234689999999999999632 24466
Q ss_pred hhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhcCCCCC
Q 008237 422 KQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPR 458 (573)
Q Consensus 422 khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hrk~~~~ 458 (573)
.-|.+++...-.-.|+.......++.++.+|++..+.
T Consensus 70 ~~s~~~~~~~~~~~~~~~~~~~~~~~~I~~HHg~~~~ 106 (177)
T TIGR01596 70 LLSAKLLDALLIKKGYEEEVFKLLALAVIGHHGGLSN 106 (177)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCchh
Confidence 6677766432102577778888999999999877654
No 41
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=95.39 E-value=0.15 Score=54.26 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=61.5
Q ss_pred cCCCcccEEEEEehhhhh-cCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEE
Q 008237 82 HNISRDHTRAVATAAVRA-AENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (573)
Q Consensus 82 ~~v~~~~i~~vATsA~R~-A~N~~~fl~~i~~~tG~~-i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~ 159 (573)
+++++....++-|...-. ...++.+.+.+.+..|++ +-++ .++.+..+|.- ...++|+|||+|+|.++.
T Consensus 89 l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~---~~~~~a~~~~g------~~~~lVVDiG~~~t~v~p 159 (373)
T smart00268 89 LRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIA---IQAVLSLYASG------RTTGLVIDSGDGVTHVVP 159 (373)
T ss_pred cCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEe---ccHHHHHHhCC------CCEEEEEecCCCcceEEE
Confidence 455444445566654322 344566777777777776 3333 34555544421 345899999999999999
Q ss_pred eeCCeEEEE--EEEehhHHHHHHhh
Q 008237 160 GKRGKVVFC--ESVNLGHVSLSEKF 182 (573)
Q Consensus 160 ~~~~~~~~~--~SlplG~vrl~e~f 182 (573)
+.+|.+... ..+|+|.-.+++.+
T Consensus 160 v~~G~~~~~~~~~~~~GG~~l~~~l 184 (373)
T smart00268 160 VVDGYVLPHAIKRIDIAGRDLTDYL 184 (373)
T ss_pred EECCEEchhhheeccCcHHHHHHHH
Confidence 999998755 77899998888765
No 42
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=95.31 E-value=0.041 Score=55.27 Aligned_cols=87 Identities=25% Similarity=0.319 Sum_probs=54.9
Q ss_pred EEEehhhhhcCC--hHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEE
Q 008237 91 AVATAAVRAAEN--KDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (573)
Q Consensus 91 ~vATsA~R~A~N--~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (573)
+|+-+||-++.. -+.+.+.+++++|++++|-.-| |-...+|++.+-. .+.+..++|+|||||.=++.+.+.-+.+
T Consensus 83 AVgiAAMVkt~~l~M~~iA~~l~~~lgv~V~igGvE--AemAi~GALTTPG-t~~PlaIlDmG~GSTDAsii~~~g~v~~ 159 (332)
T PF08841_consen 83 AVGIAAMVKTDKLQMQMIADELEEELGVPVEIGGVE--AEMAILGALTTPG-TDKPLAILDMGGGSTDASIINRDGEVTA 159 (332)
T ss_dssp EEEEEEEEE-SS-TCHHHHHHHHHHHTSEEEEECEH--HHHHHHHHTTSTT---SSEEEEEE-SSEEEEEEE-TTS-EEE
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHCCceEEcccc--HHHHHhcccCCCC-CCCCeEEEecCCCcccHHHhCCCCcEEE
Confidence 455666666544 2567899999999999997765 5556678876533 3456899999999999776654444444
Q ss_pred EEEehhHHHHHHh
Q 008237 169 ESVNLGHVSLSEK 181 (573)
Q Consensus 169 ~SlplG~vrl~e~ 181 (573)
..+ -|+-.+-..
T Consensus 160 iHl-AGAG~mVTm 171 (332)
T PF08841_consen 160 IHL-AGAGNMVTM 171 (332)
T ss_dssp EEE-E-SHHHHHH
T ss_pred EEe-cCCchhhHH
Confidence 444 455444433
No 43
>PRK10119 putative hydrolase; Provisional
Probab=95.28 E-value=0.11 Score=51.75 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=51.2
Q ss_pred chhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccc-cCCCC---chhhhHHHHH---cCC
Q 008237 360 VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF-TSKKG---YHKQSCHIIM---NGD 432 (573)
Q Consensus 360 ~~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~-i~~~~---~~khs~yiI~---ns~ 432 (573)
..|..+|.++|++|-+ ..+ .+..++.+||+|||||-. -++.. +...+...+. ...
T Consensus 27 ~~Hi~RV~~lA~~Ia~----~e~--------------~D~~vv~lAAlLHDv~d~~k~~~~~~~~~~~~a~~a~~~L~~~ 88 (231)
T PRK10119 27 ICHFRRVWATAQKLAA----DDD--------------VDMLVVLTACYFHDIVSLAKNHPQRHRSSILAAEETRRILRED 88 (231)
T ss_pred hHHHHHHHHHHHHHHH----hcC--------------CCHHHHHHHHHHhhcchhhhcCccccchhhHHHHHHHHHHHHc
Confidence 3799999999998732 111 235789999999999741 22211 1222443332 331
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCC
Q 008237 433 HLYGYSTDEIKLIALLTRFHRKK 455 (573)
Q Consensus 433 ~l~G~s~~E~~~iA~ia~~hrk~ 455 (573)
..||+...+..|..++..|+-+
T Consensus 89 -~~g~~~~~i~~V~~iI~~~sfs 110 (231)
T PRK10119 89 -FPDFPAEKIEAVCHAIEAHSFS 110 (231)
T ss_pred -ccCcCHHHHHHHHHHHHHcCCC
Confidence 2799999999999999988754
No 44
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=95.20 E-value=0.073 Score=49.70 Aligned_cols=93 Identities=19% Similarity=0.198 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC----------------------
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---------------------- 418 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~~---------------------- 418 (573)
.|+..|+.+|..| +..+++ + ......|++|||||+...+.
T Consensus 11 ~Hsl~Va~~a~~l----A~~~~~-----------d---~e~a~~AGLLHDIGk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (158)
T TIGR00488 11 QHCLGVGQTAKQL----AEANKL-----------D---SKKAEIAGAYHDLAKFLPKEQLKQIAKREKMPAHLLYPSPKL 72 (158)
T ss_pred HHHHHHHHHHHHH----HHHhCc-----------C---HHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCchhhcccccc
Confidence 7999999999975 333332 1 13578999999999864321
Q ss_pred CchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCcccccCCCHHHHHHHHHHHHHHHHhccccC
Q 008237 419 GYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVILQQNDC 490 (573)
Q Consensus 419 ~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hrk~~~~~~~~~~~~l~~~~~~~L~~iLRlA~~Ld~s~~ 490 (573)
.|..-+++++.+ +.||.++ .+...++||... ... ...|+.++.+|+.++..+.
T Consensus 73 ~H~~vGa~ll~~---w~~~~~~---~i~~aI~~H~~~--~~~-----------~~~l~~iV~lAD~i~~~~~ 125 (158)
T TIGR00488 73 LHAYVGAYILKR---EFGVQDE---DILDAIRNHTSG--PPG-----------MSLLDMIIYVADKLEPNRG 125 (158)
T ss_pred cHHHHHHHHHHH---HhCCCcH---HHHHHHHHhCCC--CCC-----------CCHHHHHHHhHHHHhhccc
Confidence 144555555542 3444332 244445566531 100 1247889999999987663
No 45
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=95.15 E-value=0.15 Score=52.35 Aligned_cols=109 Identities=20% Similarity=0.237 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHH-HcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCC-c
Q 008237 67 RSVESLLMFRDIIQ-SHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDR-L 144 (573)
Q Consensus 67 r~~~~L~~f~~~~~-~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~-~ 144 (573)
-+-..|+.|-+... ..+....-..++++-.=--..-+.++.+..+.+-.-+|-+|.... -...|+- +|+.+. .
T Consensus 80 ~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~---aAAIGag--lpi~ep~G 154 (342)
T COG1077 80 VTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPM---AAAIGAG--LPIMEPTG 154 (342)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHH---HHHhcCC--CcccCCCC
Confidence 33456777777654 233111112333321111112234567777776666788876444 3444543 444332 3
Q ss_pred eEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHH
Q 008237 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSE 180 (573)
Q Consensus 145 ~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e 180 (573)
.+++|||||+||+.+..-+.+..+.|+.+|-=.+.+
T Consensus 155 ~mvvDIGgGTTevaVISlggiv~~~Sirv~GD~~De 190 (342)
T COG1077 155 SMVVDIGGGTTEVAVISLGGIVSSSSVRVGGDKMDE 190 (342)
T ss_pred CEEEEeCCCceeEEEEEecCEEEEeeEEEecchhhH
Confidence 699999999999999999999999999998755543
No 46
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=94.94 E-value=0.46 Score=50.59 Aligned_cols=87 Identities=18% Similarity=0.120 Sum_probs=56.3
Q ss_pred cEEEEEehhhhhc-CChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeE
Q 008237 88 HTRAVATAAVRAA-ENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKV 165 (573)
Q Consensus 88 ~i~~vATsA~R~A-~N~~~fl~~i~~~tG~~-i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~ 165 (573)
...++-|...-.. ..++.+.+.+.+..|++ +-+++..-=|. ++. ....++|+|||+|+|.++.+.+|.+
T Consensus 95 ~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~---~~~------g~~~~lVVDiG~~~t~i~pv~~G~~ 165 (371)
T cd00012 95 EHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSL---YAS------GRTTGLVVDSGDGVTHVVPVYDGYV 165 (371)
T ss_pred CCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHH---Hhc------CCCeEEEEECCCCeeEEEEEECCEE
Confidence 3444544433222 34556667677777765 44444433333 332 1245899999999999999999988
Q ss_pred EEE--EEEehhHHHHHHhhc
Q 008237 166 VFC--ESVNLGHVSLSEKFG 183 (573)
Q Consensus 166 ~~~--~SlplG~vrl~e~f~ 183 (573)
... ..+++|.-.+++.+.
T Consensus 166 ~~~~~~~~~~GG~~l~~~l~ 185 (371)
T cd00012 166 LPHAIKRLDLAGRDLTRYLK 185 (371)
T ss_pred chhhheeccccHHHHHHHHH
Confidence 753 788999988887653
No 47
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=94.86 E-value=0.033 Score=63.77 Aligned_cols=54 Identities=15% Similarity=0.229 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhc
Q 008237 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (573)
Q Consensus 399 r~lL~~Aa~LhdiG~~i~~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hr 453 (573)
+.+|.+||+|||||+-.. .+|.+-++.+...--.=+||+++++..+..+++||-
T Consensus 402 ~~lL~LAALlHDIGKg~g-~dHs~~GA~~A~~i~~RLgl~~~~~e~V~~LV~~HL 455 (693)
T PRK00227 402 PDLLLLGALYHDIGKGYP-RPHEQVGAEMVARAARRMGLNLRDRAVVQTLVAEHT 455 (693)
T ss_pred cHHHHHHHHHHhhcCCCC-CChhHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHhc
Confidence 368899999999999874 478999998886543358999999999999999994
No 48
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=94.81 E-value=0.053 Score=56.41 Aligned_cols=109 Identities=14% Similarity=0.273 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCC------c-hhhhHHHHHcCCC
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG------Y-HKQSCHIIMNGDH 433 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~~~------~-~khs~yiI~ns~~ 433 (573)
+|..+|+.++..+ +...| +++.+-+++..||.|||||+--=+++ + .-+-+-+...++
T Consensus 188 ~H~~Rv~~~~~~l----Ae~lg-----------Lse~~v~~i~~AapLHDIGKvaiPD~ILlKpg~Lt~ee~~imk~H~- 251 (360)
T COG3437 188 DHLERVAQYSELL----AELLG-----------LSEEEVDLIKKAAPLHDIGKVAIPDSILLKPGKLTSEEFEIMKGHP- 251 (360)
T ss_pred hHHHHHHHHHHHH----HHHhC-----------CCHHHHHHHHhccchhhcccccCChHHhcCCCCCCHHHHHHHhcch-
Confidence 6888888888764 44444 35566789999999999998643321 1 112222233332
Q ss_pred CCCC---CHHH--HHHHHHHHHHhcCCCCCCCcccccCCCHHHHHHHHHHHHHHHHhcc
Q 008237 434 LYGY---STDE--IKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVILQQ 487 (573)
Q Consensus 434 l~G~---s~~E--~~~iA~ia~~hrk~~~~~~~~~~~~l~~~~~~~L~~iLRlA~~Ld~ 487 (573)
.+|. ..-+ .+..|.||++|.-.....-. ..-|..+.+=..|.|+.+|+.+|.
T Consensus 252 ~~G~~il~~s~~~mq~a~eIa~~HHErwDGsGY--PdgLkGd~IPl~arI~aiADvfDA 308 (360)
T COG3437 252 ILGAEILKSSERLMQVAAEIARHHHERWDGSGY--PDGLKGDEIPLSARIVAIADVFDA 308 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC--CCCCCccccchhHHHHHHHHHHHH
Confidence 4443 2223 46777899999766654321 122333445556778888887764
No 49
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=94.79 E-value=0.44 Score=49.05 Aligned_cols=153 Identities=21% Similarity=0.278 Sum_probs=89.4
Q ss_pred EEEEecccceEEEEEEEeC----CC----CEEEEEe---eeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Q 008237 16 ASIDMGTSSFKLLIIRAYP----NG----KFLTIDT---LKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNI 84 (573)
Q Consensus 16 AvIDIGSNsirL~I~e~~~----~~----~~~~i~~---~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v 84 (573)
-.||||+.+..++..++.- .+ +++++++ ++.++ +---+.+.|.|...++...+ +++|+. -|+
T Consensus 8 VGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~kdi~~rS~i-~FTPv~~q~~id~~alk~~v--~eeY~~----AGi 80 (473)
T COG4819 8 VGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIKKDISWRSPI-FFTPVDKQGGIDEAALKKLV--LEEYQA----AGI 80 (473)
T ss_pred eeeeccCceeeeeeeeeEEeecccccccceEEEEecceeeecce-eeeeecccCCccHHHHHHHH--HHHHHH----cCC
Confidence 5799999998776665431 11 2333322 12222 22344566888888877654 456654 255
Q ss_pred CcccEE---EEEehhhhhcCChHHHHHHHHHHcCCcEEEeCh-HHHHHHHHhhhh-ccCCC-CCCceEEEEeCCCceEEE
Q 008237 85 SRDHTR---AVATAAVRAAENKDEFVECVREKVGFEVDVLTG-EQEAKFVYMGVL-QFLPV-FDRLVLSVDIGGGSTEFV 158 (573)
Q Consensus 85 ~~~~i~---~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg-~eEA~l~~~gv~-~~~~~-~~~~~lviDIGGGStEl~ 158 (573)
.++.|- ++-|----.-+|+..++..+..-.|-=|----| .-|.-..-.|.- +++.. .....+=+|||||.|-++
T Consensus 81 ~pesi~sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~s 160 (473)
T COG4819 81 APESIDSGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYS 160 (473)
T ss_pred ChhccccccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCcccee
Confidence 543321 122322223467778888887766632222222 234444444432 22321 113478899999999999
Q ss_pred EeeCCeEEEEEEEehhH
Q 008237 159 IGKRGKVVFCESVNLGH 175 (573)
Q Consensus 159 ~~~~~~~~~~~SlplG~ 175 (573)
+|+.|++.....|.+|.
T Consensus 161 lFD~Gkv~dTaCLdiGG 177 (473)
T COG4819 161 LFDAGKVSDTACLDIGG 177 (473)
T ss_pred eecccccccceeeecCc
Confidence 99999999999998886
No 50
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=94.75 E-value=0.048 Score=58.96 Aligned_cols=57 Identities=19% Similarity=0.341 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCCchhhhHHHHHcC
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNG 431 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~~~~~khs~yiI~ns 431 (573)
+|+-=|..+|..+++.|.....- .+++.++.++++||+|||||.. -.-|++..+.+.
T Consensus 54 eHSLGV~~la~~~~~~l~~~~~~---------~~~~~~~~~~~~AALLHDIGHg-----PFSH~fE~~~~~ 110 (421)
T COG1078 54 EHSLGVYHLARRLLEHLEKNSEE---------EIDEEERLLVRLAALLHDIGHG-----PFSHTFEYVLDK 110 (421)
T ss_pred chhhHHHHHHHHHHHHHhhcccc---------ccchHHHHHHHHHHHHHccCCC-----ccccchHHHhcc
Confidence 68888999999999988755331 2455677899999999999953 334555555444
No 51
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.72 E-value=0.036 Score=64.79 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhc
Q 008237 400 EYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (573)
Q Consensus 400 ~lL~~Aa~LhdiG~~i~~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hr 453 (573)
.+|.+||+|||||+-... +|++-++.+...--.=+||+.+++..++.+++||-
T Consensus 443 ~lL~lAaLlHDiGKg~~~-~Hs~~Ga~~a~~i~~RL~l~~~~~~~v~~LV~~Hl 495 (774)
T PRK03381 443 DLLLLGALLHDIGKGRGG-DHSVVGAELARQIGARLGLSPADVALLSALVRHHL 495 (774)
T ss_pred HHHHHHHHHHhhcCCCCC-ChHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHhh
Confidence 578999999999997654 78888888876543358999999999999999994
No 52
>PTZ00280 Actin-related protein 3; Provisional
Probab=94.41 E-value=0.71 Score=50.06 Aligned_cols=91 Identities=13% Similarity=0.056 Sum_probs=56.8
Q ss_pred EEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCC-CCCceEEEEeCCCceEEEEeeCCeEEEE-
Q 008237 92 VATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPV-FDRLVLSVDIGGGSTEFVIGKRGKVVFC- 168 (573)
Q Consensus 92 vATsA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~~~~~-~~~~~lviDIGGGStEl~~~~~~~~~~~- 168 (573)
+....+--..+++.+.+-+.+..+++- -+....-=+.|++......-.. ....++|+|+|.|+|.++-+-+|.+...
T Consensus 107 lte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~ 186 (414)
T PTZ00280 107 LTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSS 186 (414)
T ss_pred EeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccc
Confidence 333444445577788888888888774 3333333333332110110000 2245899999999999999888887643
Q ss_pred -EEEehhHHHHHHhh
Q 008237 169 -ESVNLGHVSLSEKF 182 (573)
Q Consensus 169 -~SlplG~vrl~e~f 182 (573)
..+++|.-.+++.+
T Consensus 187 ~~~~~~GG~~lt~~L 201 (414)
T PTZ00280 187 IKHIPLAGRDITNFI 201 (414)
T ss_pred eEEecCcHHHHHHHH
Confidence 56789988877754
No 53
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=94.04 E-value=0.12 Score=54.71 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC------------------CCchh
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK------------------KGYHK 422 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~------------------~~~~k 422 (573)
.|+.+|+.+|..| ++..|| +++..+.|.+||+|||||+--=+ +.|..
T Consensus 151 ~Hs~~va~~a~~i----a~~lgl-----------~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt~eE~~~ik~H~~ 215 (344)
T COG2206 151 GHSVRVAELAEAI----AKKLGL-----------SEEKIEELALAGLLHDIGKIGIPDSILNKPGKLTEEEFEIIKKHPI 215 (344)
T ss_pred HHHHHHHHHHHHH----HHHcCC-----------CHHHHHHHHHHHHHhhcccccCCHHHhCCCCCCCHHHHHHHHhchH
Confidence 6999999999875 444443 44556889999999999985432 34555
Q ss_pred hhHHHHHcCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCcccccCCCHHHHHHHHHHHHHHHHhccccC
Q 008237 423 QSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQKFRVLCAIVRLSVILQQNDC 490 (573)
Q Consensus 423 hs~yiI~ns~~l~G~s~~E~~~iA~ia~~hrk~~~~~~~~~~~~l~~~~~~~L~~iLRlA~~Ld~s~~ 490 (573)
.++.++.+.+ -|. ..+..+|.+|+-.....- +..-|..+.+-..+.|+-+|+..|.-..
T Consensus 216 ~g~~iL~~~~---~~~----~~~~~~~l~HHEr~DGtG--YP~GL~GeeI~l~aRIiAVADvydAlts 274 (344)
T COG2206 216 YGYDILKDLP---EFL----ESVRAVALRHHERWDGTG--YPRGLKGEEIPLEARIIAVADVYDALTS 274 (344)
T ss_pred HHHHHHHhcc---ccc----HHHHHHHHHhhhccCCCC--CCCCCCcccCChHhHHHHHhhHHHHHhc
Confidence 5555554432 122 233344444554433321 1122333555667889999998886553
No 54
>PTZ00004 actin-2; Provisional
Probab=93.98 E-value=1.2 Score=47.55 Aligned_cols=151 Identities=13% Similarity=0.115 Sum_probs=89.1
Q ss_pred EEEEEecccceEEEEEEEeCCCCEE-----EEEeee----------eeeeeccCC------------CcCCCCC-HHHHH
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFL-----TIDTLK----------QPVILGRDL------------SSSCSIS-TQSQA 66 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~-----~i~~~k----------~~vrLg~~~------------~~~g~ls-~e~i~ 66 (573)
.-|||+||.++|.-.+.-+ .++ .+-+.+ ..+-.|+.. .++|.+. .++++
T Consensus 8 ~vViD~Gs~~~k~G~ag~~---~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~e 84 (378)
T PTZ00004 8 AAVVDNGSGMVKAGFAGDD---APRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDME 84 (378)
T ss_pred eEEEECCCCeEEEeeCCCC---CCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHHHH
Confidence 4799999999998876321 121 111111 112234332 2334443 46666
Q ss_pred HHHHHHHHHHHHHHHcCCCcccEEEEEehh-hhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCc
Q 008237 67 RSVESLLMFRDIIQSHNISRDHTRAVATAA-VRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRL 144 (573)
Q Consensus 67 r~~~~L~~f~~~~~~~~v~~~~i~~vATsA-~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~~~~~~~~~ 144 (573)
..++-+ |. +..++++....++-|.. +--..+++.+.+-+.+..|++- -+.+. +.++.++. ....
T Consensus 85 ~i~~~~--~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~---~~ls~ya~------g~~t 150 (378)
T PTZ00004 85 KIWHHT--FY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQ---AVLSLYAS------GRTT 150 (378)
T ss_pred HHHHHH--HH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeecc---HHHHHHhc------CCce
Confidence 555531 21 23345544445566654 3333556677888888888873 33333 44444432 1245
Q ss_pred eEEEEeCCCceEEEEeeCCeEE--EEEEEehhHHHHHHhh
Q 008237 145 VLSVDIGGGSTEFVIGKRGKVV--FCESVNLGHVSLSEKF 182 (573)
Q Consensus 145 ~lviDIGGGStEl~~~~~~~~~--~~~SlplG~vrl~e~f 182 (573)
++|+|+|.++|.++-+-+|.+. ....+++|.-.+++.+
T Consensus 151 glVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L 190 (378)
T PTZ00004 151 GIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYM 190 (378)
T ss_pred EEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHH
Confidence 8999999999999999988876 4566788888777654
No 55
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.075 Score=56.71 Aligned_cols=143 Identities=22% Similarity=0.181 Sum_probs=84.8
Q ss_pred CeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHH----HHHHH-HHHcCCCcc
Q 008237 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLL----MFRDI-IQSHNISRD 87 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~----~f~~~-~~~~~v~~~ 87 (573)
+++..||-||-.-|.-|+++. +|......-+-..=+|-.++.+...-+... .....+|- .|... ++ .+.
T Consensus 120 qYv~~idagstgsr~~iyqfi-dge~~~~~~~~~~n~L~~~l~d~d~~t~G~-~~s~~~l~qiA~~~~p~e~~--r~~-- 193 (549)
T COG5371 120 QYVKMIDAGSTGSRSNIYQFI-DGEIEGQYLWLNTNYLEPGLSDFDTDTVGF-ADSGGALLQIAFEFVPSEIR--RCM-- 193 (549)
T ss_pred heecccccCCCccceeEEEee-cCccCcchhhhhhhhhcccccccccccHHH-HhhccHHHHhhhccCCHHHh--hcC--
Confidence 567899999999999999997 565554443333334444443322222222 22222222 22111 11 232
Q ss_pred cEEEEEehhhhhc--CChHHHHHHHHHHc----------CCcEEEeChHHHHHHHHhhhhccC----CC-C-CCceEEEE
Q 008237 88 HTRAVATAAVRAA--ENKDEFVECVREKV----------GFEVDVLTGEQEAKFVYMGVLQFL----PV-F-DRLVLSVD 149 (573)
Q Consensus 88 ~i~~vATsA~R~A--~N~~~fl~~i~~~t----------G~~i~VIsg~eEA~l~~~gv~~~~----~~-~-~~~~lviD 149 (573)
.+.+.||+.+|-- .-...++..++..+ |.-|+++.|.+|.-|.+.-+...+ .. . ...+-|+|
T Consensus 194 pi~~~~taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~g~~ieil~G~~Eg~~a~~~m~~~ls~~g~~~~~~~T~~v~d 273 (549)
T COG5371 194 PIIVTATAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYLGDLIEILNGVDEGNLADPCMNRGLSNDGTDAGTHGTGAVVD 273 (549)
T ss_pred cceEEEEeeeeecCccchhhHHHHHHHhhccccccceecccceeeccCccccchhhhhhhhhhccccCCCcccCccccee
Confidence 4788999999921 22345666666655 457999999999966654433221 11 1 23578999
Q ss_pred eCCCceEEEEee
Q 008237 150 IGGGSTEFVIGK 161 (573)
Q Consensus 150 IGGGStEl~~~~ 161 (573)
.|||||++++-.
T Consensus 274 ~gg~stqll~~~ 285 (549)
T COG5371 274 CGGGSTQLLLKP 285 (549)
T ss_pred ccCcceeeeecC
Confidence 999999998644
No 56
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=93.76 E-value=0.081 Score=58.30 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhccccc----------CCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhcC
Q 008237 400 EYLEAACLLHNIGHFT----------SKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (573)
Q Consensus 400 ~lL~~Aa~LhdiG~~i----------~~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hrk 454 (573)
.+|.+||+|||||+.. ++++|.+-++.+...--.=++||.+++..+..++++|-.
T Consensus 280 ~~l~lAaLLHDiGK~~t~~~~~~g~~~f~gH~~~Ga~~a~~iL~rLk~s~~~~~~V~~LV~~H~~ 344 (466)
T TIGR02692 280 LVLRWAALLHDIGKPATRRFEPDGRVSFHHHEVVGAKMVRKRMRALKYSKQMVEDVSRLVELHLR 344 (466)
T ss_pred HHHHHHHHHhhccCCCCcccccCCCcccCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc
Confidence 4799999999999763 566788888887643322479999999999999999953
No 57
>PRK05007 PII uridylyl-transferase; Provisional
Probab=93.60 E-value=0.094 Score=62.25 Aligned_cols=55 Identities=25% Similarity=0.237 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhcC
Q 008237 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (573)
Q Consensus 399 r~lL~~Aa~LhdiG~~i~~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hrk 454 (573)
+.+|.+||+|||||+-... +|.+-++.+...--.-+||+.+++..++.++++|-.
T Consensus 498 ~~lL~lAaLlHDIGKg~~~-dHs~~Ga~~a~~il~rl~l~~~~~~~v~~LV~~Hl~ 552 (884)
T PRK05007 498 KELLLLAALFHDIAKGRGG-DHSILGAQDALEFAELHGLNSRETQLVAWLVRNHLL 552 (884)
T ss_pred hhHHHHHHHHHhhcCCCCC-ChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999997644 788888887754423589999999999999999954
No 58
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.59 E-value=0.078 Score=62.99 Aligned_cols=52 Identities=19% Similarity=0.085 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHh
Q 008237 400 EYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFH 452 (573)
Q Consensus 400 ~lL~~Aa~LhdiG~~i~~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~h 452 (573)
.+|.+||+|||||+-... +|.+-++.+...--.=+||+.++...++.++++|
T Consensus 498 ~lL~lAaLlHDIGKg~~~-~Hs~~Ga~~a~~i~~rl~l~~~~~~~v~~LV~~H 549 (895)
T PRK00275 498 ELLYIAGLYHDIGKGRGG-DHSELGAVDAEAFCQRHQLPAWDTRLVVWLVENH 549 (895)
T ss_pred HHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 589999999999998754 7888898887554335899999999999999999
No 59
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=93.53 E-value=0.43 Score=47.63 Aligned_cols=80 Identities=14% Similarity=0.283 Sum_probs=48.2
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEE
Q 008237 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (573)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (573)
++.+|||||.|+|..+++ .+|++ +...+.+......-......+++.+-+.+ ..-++++++.++++..+|.+|+
T Consensus 1 y~lgiDiGTts~K~~l~d--~~g~i--v~~~~~~~~~~~~~~g~~e~d~~~~~~~~--~~~~~~~~~~~~~~~~~I~aI~ 74 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFD--EDGKI--VASASRPYPYYTPEPGWAEQDPDEIWEAI--CEALKELLSQAGIDPEQIKAIG 74 (245)
T ss_dssp EEEEEEECSSEEEEEEEE--TTSCE--EEEEEEEETEBCSSTTEEEE-HHHHHHHH--HHHHHHHHHHCTSCGGGEEEEE
T ss_pred CEEEEEEcccceEEEEEe--CCCCE--EEEEEEeeeeccccccccccChHHHHHHH--HHHHHHHHhhcCcccceeEEEE
Confidence 468999999999999998 35654 44444443332221112234555554433 2334555666678778999999
Q ss_pred ehhhhh
Q 008237 94 TAAVRA 99 (573)
Q Consensus 94 TsA~R~ 99 (573)
.++.+.
T Consensus 75 is~~~~ 80 (245)
T PF00370_consen 75 ISGQGH 80 (245)
T ss_dssp EEE-SS
T ss_pred eccccC
Confidence 887654
No 60
>PRK04374 PII uridylyl-transferase; Provisional
Probab=93.18 E-value=0.11 Score=61.45 Aligned_cols=53 Identities=19% Similarity=0.066 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhc
Q 008237 400 EYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (573)
Q Consensus 400 ~lL~~Aa~LhdiG~~i~~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hr 453 (573)
.+|.+|++|||||+-... +|.+-++.+...-=.=+|++.+++..++.++++|-
T Consensus 487 ~lL~lAaLlHDIGKg~~~-dHs~~Ga~~a~~i~~Rl~l~~~~~~~v~~LV~~Hl 539 (869)
T PRK04374 487 ELLLLAGLFHDIAKGRGG-DHSELGAVDARAFCLAHRLSEGDTELVTWLVEQHL 539 (869)
T ss_pred cHHHHHHHHHhccCCCCC-ChHHHhHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 589999999999998754 78888888875432257999999999999999994
No 61
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.03 E-value=0.13 Score=60.94 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhcC
Q 008237 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (573)
Q Consensus 399 r~lL~~Aa~LhdiG~~i~~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hrk 454 (573)
+.+|.+||+|||||+-... +|++-++.+...--.=+||+.+++..++.+++||-.
T Consensus 473 ~~~L~lAaLlHDIGKG~~~-dHs~~Ga~~a~~i~~rl~l~~~~~~~v~~LV~~Hl~ 527 (854)
T PRK01759 473 RTLLYIAALFHDIAKGRGG-DHAELGAVDMRQFAQQHGFDQREIETMAWLVQQHLL 527 (854)
T ss_pred HHHHHHHHHHHhhcCCCCC-ChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhH
Confidence 4689999999999997654 788888887765422589999999999999999953
No 62
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=92.93 E-value=0.45 Score=45.59 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=37.8
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHH
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRD 77 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~ 77 (573)
+++|||||.++++++.+..+++.++++.....+ ..|+ .+|.|.+ ++.+.+++++..+
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~---s~gi-~~G~I~d--~~~~~~~I~~ai~ 57 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVP---SRGI-RKGVIVD--IEAAARAIREAVE 57 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEec---CCCc-cCcEEEC--HHHHHHHHHHHHH
Confidence 478999999999999998766788888666554 3343 3455544 3344444444433
No 63
>PRK03059 PII uridylyl-transferase; Provisional
Probab=92.89 E-value=0.14 Score=60.49 Aligned_cols=54 Identities=17% Similarity=0.103 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhc
Q 008237 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (573)
Q Consensus 399 r~lL~~Aa~LhdiG~~i~~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hr 453 (573)
+.+|.+||+|||||+-.. .+|.+-++.+...--.=+||+.++...++.++++|-
T Consensus 477 ~~lL~LAaLlHDIGKg~~-~~Hs~~GA~~A~~il~rl~l~~~~~~~V~~LV~~Hl 530 (856)
T PRK03059 477 PWLLYVAALFHDIAKGRG-GDHSTLGAVDARRFCRQHGLAREDAELVVWLVEHHL 530 (856)
T ss_pred hhHHHHHHHHHhhccCCC-CCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 478999999999999765 378888887765432248999999999999999995
No 64
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=92.43 E-value=0.29 Score=51.75 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=34.1
Q ss_pred CCceEEEEeCCCceEEEEeeCCeEEEEEE--EehhHHHHHHh
Q 008237 142 DRLVLSVDIGGGSTEFVIGKRGKVVFCES--VNLGHVSLSEK 181 (573)
Q Consensus 142 ~~~~lviDIGGGStEl~~~~~~~~~~~~S--lplG~vrl~e~ 181 (573)
++..+++|||||+|+++.++++++....| ++.|...+.+.
T Consensus 184 ~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~ 225 (344)
T PRK13917 184 EGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKR 225 (344)
T ss_pred cCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHH
Confidence 34579999999999999999999976665 99999888764
No 65
>PTZ00466 actin-like protein; Provisional
Probab=92.32 E-value=2.7 Score=45.11 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=89.2
Q ss_pred CeEEEEEecccceEEEEEEEeCCCCEE-----EEEeeee----------eeeeccCC------------CcCCCCC-HHH
Q 008237 13 TLFASIDMGTSSFKLLIIRAYPNGKFL-----TIDTLKQ----------PVILGRDL------------SSSCSIS-TQS 64 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~-----~i~~~k~----------~vrLg~~~------------~~~g~ls-~e~ 64 (573)
...-|||+||.++|.=.+.- ..++ .+-+.+. .+-.|+.. .++|.+. -+.
T Consensus 12 ~~~iViD~GS~~~K~G~ag~---~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~ 88 (380)
T PTZ00466 12 NQPIIIDNGTGYIKAGFAGE---DVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWND 88 (380)
T ss_pred CCeEEEECCCCcEEEeeCCC---CCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHH
Confidence 34579999999999776631 2222 1221111 11233321 1223333 466
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcccEEEEEeh-hhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCC
Q 008237 65 QARSVESLLMFRDIIQSHNISRDHTRAVATA-AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDR 143 (573)
Q Consensus 65 i~r~~~~L~~f~~~~~~~~v~~~~i~~vATs-A~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~ 143 (573)
++...+-+ |. ..++++...-++-|+ .+--..+++.+.+-+.+..+++-=.+ ...+.++.++. ...
T Consensus 89 ~e~iw~~~--f~----~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~--~~~~~lsl~a~------g~~ 154 (380)
T PTZ00466 89 MENIWIHV--YN----SMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFI--SIQAILSLYSC------GKT 154 (380)
T ss_pred HHHHHHHH--Hh----hcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEE--ecchHHHHHhc------CCc
Confidence 66666654 32 345554333444444 44444566777787888878764332 23444444432 224
Q ss_pred ceEEEEeCCCceEEEEeeCCeEEE--EEEEehhHHHHHHhh
Q 008237 144 LVLSVDIGGGSTEFVIGKRGKVVF--CESVNLGHVSLSEKF 182 (573)
Q Consensus 144 ~~lviDIGGGStEl~~~~~~~~~~--~~SlplG~vrl~e~f 182 (573)
.++|+|+|-++|.++-+-+|.+.. ...+++|.-.+++.+
T Consensus 155 tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L 195 (380)
T PTZ00466 155 NGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYL 195 (380)
T ss_pred eEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHH
Confidence 589999999999999988888763 456789988887754
No 66
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=92.23 E-value=1 Score=45.63 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=63.8
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccE-EEE
Q 008237 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHT-RAV 92 (573)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i-~~v 92 (573)
+++-||+||-+++.++.+.+ ++....+.....+++ +.=+.++ +-++ |.+++++.|++..++ .++
T Consensus 2 ~~~GIDiGStttK~Vlid~~-~~~~~~~~~~~~~~~--------~~~~~~~---~~~~---l~~~~~~~g~~~~~i~~i~ 66 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVD-GDKEECLAKRNDRIR--------QRDPFKL---AEDA---YDDLLEEAGLAAADVAYCA 66 (262)
T ss_pred eEEEEEcCcccEEEEEEecC-CCeeEEEEEEEecCC--------CCCHHHH---HHHH---HHHHHHHcCCChhheEEEE
Confidence 47899999999999999743 232333322211111 1111222 2233 344445566632233 456
Q ss_pred EehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe-eCCeEE
Q 008237 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG-KRGKVV 166 (573)
Q Consensus 93 ATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~-~~~~~~ 166 (573)
+|=-=|.. .|.+ +.-. |-.--..|+....| +- ..|+||||--+-++.+ ++|++.
T Consensus 67 ~TGYGR~~----~~a~------~~vt-------EIt~ha~GA~~~~p--~~-~tIiDIGGQD~K~I~~~~~G~v~ 121 (262)
T TIGR02261 67 TTGEGESL----AFHT------GHFY-------SMTTHARGAIYLNP--EA-RAVLDIGALHGRAIRMDERGKVE 121 (262)
T ss_pred EECCchhh----hhhc------CCee-------EEeHHHHHHHHHCC--CC-CEEEEeCCCceEEEEEcCCCcEe
Confidence 66554543 2222 1111 33444556665554 22 4999999999999887 467664
No 67
>PRK05092 PII uridylyl-transferase; Provisional
Probab=91.98 E-value=0.24 Score=59.38 Aligned_cols=54 Identities=24% Similarity=0.178 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhc
Q 008237 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (573)
Q Consensus 399 r~lL~~Aa~LhdiG~~i~~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hr 453 (573)
+.+|.+||+|||||+-- ..+|.+-++.+...--.=+||+.+++..++.++++|-
T Consensus 530 ~~~L~lAaLlHDIGKg~-~~dHs~~Ga~~a~~~~~rl~l~~~~~~~v~~LV~~Hl 583 (931)
T PRK05092 530 RRALYVAVLLHDIAKGR-PEDHSIAGARIARRLCPRLGLSPAETETVAWLVEHHL 583 (931)
T ss_pred HHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46899999999999975 3578888888875543358999999999999999994
No 68
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=91.59 E-value=0.26 Score=58.46 Aligned_cols=54 Identities=26% Similarity=0.209 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhc
Q 008237 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (573)
Q Consensus 399 r~lL~~Aa~LhdiG~~i~~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hr 453 (573)
+.+|.+||+|||||+-- ..+|++-++.+..+--.=+||+.++...++.++++|-
T Consensus 465 ~~~L~lAaLlHDiGKg~-~~~H~~~Ga~~a~~~~~rl~l~~~~~~~v~~LV~~Hl 518 (850)
T TIGR01693 465 PELLYLAALLHDIGKGR-GGDHSVLGAEDARDVCPRLGLDRPDTELVAWLVRNHL 518 (850)
T ss_pred HHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57899999999999964 4578888988876532247999999999999999995
No 69
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=91.45 E-value=0.31 Score=52.75 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhccccc-------CCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhc
Q 008237 400 EYLEAACLLHNIGHFT-------SKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (573)
Q Consensus 400 ~lL~~Aa~LhdiG~~i-------~~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hr 453 (573)
..|.+||+|||+|+.. ++++|.+-+..++..--.=++++.+.+..+..+++||-
T Consensus 246 l~lr~AaLlHDlGK~~t~~~~~~~~~gH~~~Ga~~a~~i~~RLk~p~~~~~~~~~lv~~H~ 306 (409)
T PRK10885 246 LDVRFAALCHDLGKGLTPPEEWPRHHGHEPRGVKLVEQLCQRLRVPNECRDLALLVAEEHD 306 (409)
T ss_pred HHHHHHHHhccccCCCCCcccCcccCchhHhHHHHHHHHHHHcCcCHHHHHHHHHHHHHhh
Confidence 3589999999999976 45578888888775432247999999999999999995
No 70
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=91.20 E-value=3.2 Score=42.71 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=66.0
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEE-EE
Q 008237 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR-AV 92 (573)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~-~v 92 (573)
++..|||||-|++.++.+ + + +++... ...+|.-..++.. +-+.+++++.|.+..++. ++
T Consensus 33 ~~~GIDiGStt~K~Vlld-~--~--~i~~~~---------~~~tg~~~~~~a~------~~l~~~l~~~g~~~~~v~~~~ 92 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVC-D--G--ELYGYN---------SMRTGNNSPDSAK------NALQGIMDKIGMKLEDINYVV 92 (293)
T ss_pred EEEEEEeCchhEEEEEEe-C--C--EEEEEE---------eecCCCCHHHHHH------HHHHHHHHHcCCcccceEEEE
Confidence 679999999999999996 2 3 233222 1223322333322 233344455565433344 56
Q ss_pred EehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe-eCCeEE
Q 008237 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG-KRGKVV 166 (573)
Q Consensus 93 ATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~-~~~~~~ 166 (573)
+|=-=|..- .|.+ ++ -.|----..|+....|. +-..|+||||--+-++.+ ++|++.
T Consensus 93 ~TGyGr~~~---~~a~----------~~---v~EItaha~Ga~~~~pp--~v~tIIDIGGQDsK~I~~d~~G~v~ 149 (293)
T TIGR03192 93 GTGYGRVNV---PFAH----------KA---ITEIACHARGANYMGGN--AVRTILDMGGQDCKAIHCDEKGKVT 149 (293)
T ss_pred EECcchhhc---chhh----------cc---eeeHHHHHHHHHHhcCC--CCCEEEEeCCCceEEEEEcCCCcEe
Confidence 675555421 1211 22 24555666777665532 224899999999999987 577654
No 71
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=91.05 E-value=0.27 Score=48.68 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=40.5
Q ss_pred chhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCC---chhhhHHHHHcC
Q 008237 360 VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG---YHKQSCHIIMNG 431 (573)
Q Consensus 360 ~~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~~~---~~khs~yiI~ns 431 (573)
..|+..|+.+|..| +...|. +-.+...||+|||||..+.+.. |..-++-+...-
T Consensus 38 l~H~~~Va~lA~~I----a~~~g~--------------D~~l~~~aaLLHDIg~~~~~~~~~~h~~~gae~a~~~ 94 (222)
T COG1418 38 LEHSLRVAYLAYRI----AEEEGV--------------DPDLALRAALLHDIGKAIDHEPGGSHAEIGAEIARKF 94 (222)
T ss_pred HHHHHHHHHHHHHH----HHHcCC--------------CHHHHHHHHHHHhhccccccCCccchHHHHHHHHHHH
Confidence 38999999999985 433332 2479999999999999998874 566666665444
No 72
>PTZ00452 actin; Provisional
Probab=90.80 E-value=4.4 Score=43.37 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=62.0
Q ss_pred cCCCcccEEEEEeh-hhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe
Q 008237 82 HNISRDHTRAVATA-AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (573)
Q Consensus 82 ~~v~~~~i~~vATs-A~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~ 160 (573)
.++++..-.++-|+ .+.-..|++.+.+-+.+..+++-=.+ ...+.++.++. ....++|+|+|-|+|.++-+
T Consensus 94 l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~--~~~~~lslya~------g~~tglVVDiG~~~t~v~PV 165 (375)
T PTZ00452 94 LCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYI--SNEAVLSLYTS------GKTIGLVVDSGEGVTHCVPV 165 (375)
T ss_pred cCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEE--echHHHHHHHC------CCceeeeecCCCCcceEEEE
Confidence 45655444455565 44445567788888888888865333 23344444432 22458999999999999999
Q ss_pred eCCeEE--EEEEEehhHHHHHHhh
Q 008237 161 KRGKVV--FCESVNLGHVSLSEKF 182 (573)
Q Consensus 161 ~~~~~~--~~~SlplG~vrl~e~f 182 (573)
-+|.+. ....+++|.-.+++.+
T Consensus 166 ~dG~~l~~~~~r~~~gG~~lt~~L 189 (375)
T PTZ00452 166 FEGHQIPQAITKINLAGRLCTDYL 189 (375)
T ss_pred ECCEEeccceEEeeccchHHHHHH
Confidence 888775 4466788987777744
No 73
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=90.42 E-value=2.4 Score=45.85 Aligned_cols=157 Identities=24% Similarity=0.343 Sum_probs=72.1
Q ss_pred EEEEecccceEEEEEEEeCCCC-EEEEEeeeeeeeeccCCCcC--CCCCHHHHHH----HHHHHHH-HHHHHHHcCCCcc
Q 008237 16 ASIDMGTSSFKLLIIRAYPNGK-FLTIDTLKQPVILGRDLSSS--CSISTQSQAR----SVESLLM-FRDIIQSHNISRD 87 (573)
Q Consensus 16 AvIDIGSNsirL~I~e~~~~~~-~~~i~~~k~~vrLg~~~~~~--g~ls~e~i~r----~~~~L~~-f~~~~~~~~v~~~ 87 (573)
.+|||||.++.+.+++.. +|. +......+-....|.++-.. -..+++..++ +++.|+. ..++|.+.|+++.
T Consensus 4 iAvDiGTTti~~~L~dl~-~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~~ 82 (412)
T PF14574_consen 4 IAVDIGTTTIAAYLVDLE-TGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISPE 82 (412)
T ss_dssp EEEEE-SSEEEEEEEETT-T--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--GG
T ss_pred EEEEcchhheeeEEEECC-CCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 589999999999999986 454 33444455556788876421 0012222222 2334444 4556666788766
Q ss_pred cEE---EEEehhh------------hhcCChHHHHHHH---HHHcCC------cEEEeC---hHHHHHHHHhhhh-ccCC
Q 008237 88 HTR---AVATAAV------------RAAENKDEFVECV---REKVGF------EVDVLT---GEQEAKFVYMGVL-QFLP 139 (573)
Q Consensus 88 ~i~---~vATsA~------------R~A~N~~~fl~~i---~~~tG~------~i~VIs---g~eEA~l~~~gv~-~~~~ 139 (573)
+|. ++|-.+| ..++=...|.+.. -.++|+ +|.++. |--=+-.. -|+. ..+.
T Consensus 83 ~I~~i~i~GNt~M~hLllGl~~~~L~~~Pf~p~~~~~~~~~a~~lgl~~~~~~~v~~~P~i~~fVG~Div-Agl~a~~~~ 161 (412)
T PF14574_consen 83 DIYEIVIVGNTTMLHLLLGLDPEGLGRAPFVPVFRGGVEIPAAELGLEINPDARVYILPNISGFVGADIV-AGLLATGMD 161 (412)
T ss_dssp GEEEEEEEE-HHHHHHHHT---GGGSSTTT--S-S----EEHHHHT-SS-TTSEEEE----BTTB-HHHH-HHHHHHTCC
T ss_pred HeEEEEEEecHHHHHHHcCCChHHhccCCcccccCCCcEEeHHHhCcccCCCCEEEEcCcccccccHHHH-HHHHhcCcc
Confidence 653 4444443 2222111121111 122344 333332 11111111 1111 1222
Q ss_pred CCCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhHH
Q 008237 140 VFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (573)
Q Consensus 140 ~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~v 176 (573)
..+++.|++|||. +.|++++.++++ ++.|-|-|..
T Consensus 162 ~~~~~~LliDiGT-NgEivL~~~~~~-~a~S~AAGPA 196 (412)
T PF14574_consen 162 ESDEPSLLIDIGT-NGEIVLGNGGKL-LACSTAAGPA 196 (412)
T ss_dssp C-SS-EEEEEESS-CEEEEEE-SS-E-EEEEEE--TC
T ss_pred cCCCcEEEEEecC-CeEEEEecCCEE-EEEeccCChh
Confidence 3456799999987 689999999776 5779998874
No 74
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=90.01 E-value=0.58 Score=48.89 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=45.7
Q ss_pred cEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEE--EEEEehhHHHHHHhh
Q 008237 117 EVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVF--CESVNLGHVSLSEKF 182 (573)
Q Consensus 117 ~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~--~~SlplG~vrl~e~f 182 (573)
+|.|++...=|.+.+.-=.......++..+|+||||++|.++.++++++.. +.|++.|+..+.+..
T Consensus 141 ~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I 208 (320)
T TIGR03739 141 KVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLL 208 (320)
T ss_pred EEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHH
Confidence 366777666666665421001111345689999999999999999998865 456899998888754
No 75
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=90.01 E-value=0.29 Score=52.74 Aligned_cols=55 Identities=16% Similarity=0.076 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhccccc---------CCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHhcC
Q 008237 400 EYLEAACLLHNIGHFT---------SKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (573)
Q Consensus 400 ~lL~~Aa~LhdiG~~i---------~~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~hrk 454 (573)
..+.|||+|||+|+.. ++++|.+.|..++..--.=+.++.+.+..+..+++||..
T Consensus 247 l~lR~AaLlHDiGK~~t~~~~~~~~~~~gHe~~G~~~a~~i~~RLk~pn~~~~~~~~li~~H~~ 310 (417)
T PRK13298 247 IDIRFSYLCQFLGSMIPINQIKRNYKKIFFDKYAASLIKNLCKRFKIPSYIRNIAVLNTGFYFF 310 (417)
T ss_pred HHHHHHHHHhhhcCCCCCCccCCCCcccChhHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh
Confidence 4689999999999853 457777888877754322368999999999999999954
No 76
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=89.76 E-value=1.4 Score=47.20 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=64.6
Q ss_pred CeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Q 008237 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (573)
.++..||+||.|++.++.+ ++ +++.....+ ++ ...+.+.+++ .+.+++.|++..++..+
T Consensus 144 g~~lGIDiGSTttK~Vl~d---d~--~Ii~~~~~~---------t~----~~~~~a~~~l---~~~l~~~Gl~~~di~~i 202 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVME---DN--EVIGTGWVP---------TT----KVIESAEEAV---ERALEEAGVSLEDVEAI 202 (404)
T ss_pred CEEEEEEcChhheeeEEEc---CC--eEEEEEEee---------cc----cHHHHHHHHH---HHHHHHcCCCccceeEE
Confidence 3789999999999999985 23 455432221 11 1122233333 34455567654455544
Q ss_pred -EehhhhhcCChHHHHHHHHHHcCCc--EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEE
Q 008237 93 -ATAAVRAAENKDEFVECVREKVGFE--VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV 166 (573)
Q Consensus 93 -ATsA~R~A~N~~~fl~~i~~~tG~~--i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~ 166 (573)
+|=-=|. .+.. ..|.+ +.-| --...|+....|...+...|+||||--...+..++|.+.
T Consensus 203 ~~TGyGR~------~i~~---~~~ad~iv~EI------taha~GA~~L~p~~~~v~TIIDIGGQDsK~I~l~~G~v~ 264 (404)
T TIGR03286 203 GTTGYGRF------TIGE---HFGADLIQEEL------TVNSKGAVYLADKQEGPATVIDIGGMDNKAISVWDGIPD 264 (404)
T ss_pred EeeeecHH------HHhh---hcCCCceEEEE------hhHHHHHHHhcccCCCCcEEEEeCCCceEEEEEcCCcee
Confidence 4543333 2221 12222 3333 334556655444212236999999988888887777653
No 77
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=89.74 E-value=1.1 Score=52.46 Aligned_cols=81 Identities=19% Similarity=0.110 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhccccc-------------------------
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFT------------------------- 415 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i------------------------- 415 (573)
+|...|+++|..+ ++.+|+. ....+++.|++|||+|++-
T Consensus 678 eHl~~va~lA~~f----a~~~gl~------------~~~~~~~laGllHDlGK~~~~FQ~yL~~~~~p~~~~~~~~~~~~ 741 (844)
T TIGR02621 678 DHLDNVFEVAKNF----VAKLGLG------------DLDKAVRQAARLHDLGKQRPRFQTMLGNRSYPLAKLAKSGPWAA 741 (844)
T ss_pred HHHHHHHHHHHHH----HHHcCch------------HHHHHHHHHHHhcccccCCHHHHHHhcCCCCccccccccccchh
Confidence 6888888888763 4444431 1235688999999999873
Q ss_pred ----CCCCchhhhHHHHHcCCCCCCCCHHHHH-HHHHHHHHhcCCCC
Q 008237 416 ----SKKGYHKQSCHIIMNGDHLYGYSTDEIK-LIALLTRFHRKKFP 457 (573)
Q Consensus 416 ----~~~~~~khs~yiI~ns~~l~G~s~~E~~-~iA~ia~~hrk~~~ 457 (573)
..+.|..+|..-+.|.+....+++.++. ++=+|+.+|+...|
T Consensus 742 ~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~lvl~liaaHHg~~rp 788 (844)
T TIGR02621 742 KIARSMYRHEKGSLIDVANAPGFSMLSEELSDLVLHLVATHHGRNRP 788 (844)
T ss_pred hhhhhhhcCCchhHHhhhccccccccChhHHHHHHHHHHHhccCCCC
Confidence 2456777777777776545667777775 44556777766555
No 78
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=89.73 E-value=7.1 Score=41.69 Aligned_cols=92 Identities=20% Similarity=0.181 Sum_probs=56.0
Q ss_pred cCCCcccEEEEEehhhhh-cCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEE
Q 008237 82 HNISRDHTRAVATAAVRA-AENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (573)
Q Consensus 82 ~~v~~~~i~~vATsA~R~-A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~ 159 (573)
.++++....++-|..... ..-++.+++-+.+..|++- -+++ ++.++.++.- ...++|||+|.++|.++-
T Consensus 88 l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~---~~~~a~~~~g------~~tglVVD~G~~~t~v~p 158 (393)
T PF00022_consen 88 LKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIP---SPLLALYASG------RTTGLVVDIGYSSTSVVP 158 (393)
T ss_dssp T-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEE---HHHHHHHHTT------BSSEEEEEESSS-EEEEE
T ss_pred cccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeee---cccccccccc------cccccccccceeeeeeee
Confidence 345555556666654332 2334567777788888773 3444 3344433321 235899999999999999
Q ss_pred eeCCeEEE--EEEEehhHHHHHHhh
Q 008237 160 GKRGKVVF--CESVNLGHVSLSEKF 182 (573)
Q Consensus 160 ~~~~~~~~--~~SlplG~vrl~e~f 182 (573)
+-+|.+.. ...+|+|.-.+++.+
T Consensus 159 V~dG~~~~~~~~~~~~GG~~lt~~l 183 (393)
T PF00022_consen 159 VVDGYVLPHSIKRSPIGGDDLTEYL 183 (393)
T ss_dssp EETTEE-GGGBEEES-SHHHHHHHH
T ss_pred eeeccccccccccccccHHHHHHHH
Confidence 99998863 567899998888754
No 79
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=89.65 E-value=4.7 Score=46.00 Aligned_cols=115 Identities=18% Similarity=0.216 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhc
Q 008237 59 SISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQ 136 (573)
Q Consensus 59 ~ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~ 136 (573)
.++++.+ +...|+.+++.++.+ |.+.. .+|-|==.---.+....+..+-+..|+++ ++|+...=|-+.| |.-.
T Consensus 103 ~~~p~ei--~a~iL~~lk~~a~~~lg~~v~--~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~~ 177 (599)
T TIGR01991 103 TVTPVEV--SAEILKKLKQRAEESLGGDLV--GAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAY-GLDK 177 (599)
T ss_pred EEcHHHH--HHHHHHHHHHHHHHHhCCCcc--eEEEEECCCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHH-hhcc
Confidence 4555433 345677777766554 44322 33433111111123344555666789997 6888888888776 3322
Q ss_pred cCCCCCCceEEEEeCCCceEEEEee--CCeEE---EEEEEehhHHHHHHh
Q 008237 137 FLPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSEK 181 (573)
Q Consensus 137 ~~~~~~~~~lviDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e~ 181 (573)
. .+...+|+|+|||++.+++++ ++.+. .....++|...+.+.
T Consensus 178 ~---~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~ 224 (599)
T TIGR01991 178 A---SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHA 224 (599)
T ss_pred C---CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHH
Confidence 1 245689999999999999876 44322 112247887766654
No 80
>PTZ00281 actin; Provisional
Probab=89.01 E-value=2.5 Score=45.18 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=59.4
Q ss_pred HcCCCcccEEEEEehhh-hhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEE
Q 008237 81 SHNISRDHTRAVATAAV-RAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (573)
Q Consensus 81 ~~~v~~~~i~~vATsA~-R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~ 159 (573)
..++++....++-|+.. --..+++.+.+-+.+..+++-=-+ ...+.++.++. ....++|+|+|-++|.++-
T Consensus 94 ~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~--~~~~~ls~ya~------g~~tglVVDiG~~~t~v~P 165 (376)
T PTZ00281 94 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYV--AIQAVLSLYAS------GRTTGIVMDSGDGVSHTVP 165 (376)
T ss_pred hccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEe--eccHHHHHHhc------CCceEEEEECCCceEEEEE
Confidence 34565545555666543 333556667777777777763222 22333333331 2245899999999999998
Q ss_pred eeCCeEE--EEEEEehhHHHHHHhh
Q 008237 160 GKRGKVV--FCESVNLGHVSLSEKF 182 (573)
Q Consensus 160 ~~~~~~~--~~~SlplG~vrl~e~f 182 (573)
+-+|.+. ....+++|.-.+++.+
T Consensus 166 V~dG~~~~~~~~~~~~GG~~lt~~L 190 (376)
T PTZ00281 166 IYEGYALPHAILRLDLAGRDLTDYM 190 (376)
T ss_pred EEecccchhheeeccCcHHHHHHHH
Confidence 8888776 4556788887777654
No 81
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=88.63 E-value=9.9 Score=39.28 Aligned_cols=144 Identities=16% Similarity=0.090 Sum_probs=84.7
Q ss_pred CeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Q 008237 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (573)
..+..||||.+++++.+++.. |. ++.+.+.++.- . .-.++.++...+.++++.+... ....+..|
T Consensus 6 ~~~lgidIggt~i~~~l~d~~--g~--~l~~~~~~~~~--~-----~~~~~~~~~i~~~i~~~~~~~~----~~~~~iGI 70 (314)
T COG1940 6 MTVLGIDIGGTKIKVALVDLD--GE--ILLRERIPTPT--P-----DPEEAILEAILALVAELLKQAQ----GRVAIIGI 70 (314)
T ss_pred cEEEEEEecCCEEEEEEECCC--Cc--EEEEEEEecCC--C-----CchhHHHHHHHHHHHHHHHhcC----CcCceEEE
Confidence 468999999999999999764 43 33333333111 1 0114667777777777776442 11234555
Q ss_pred Eehhhhh---------cC-----ChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEE
Q 008237 93 ATAAVRA---------AE-----NKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (573)
Q Consensus 93 ATsA~R~---------A~-----N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~ 158 (573)
+-+.--. +. +...|.+.+++.+|++|.|-+.-.=+-+.-.=.-... ..++.+.+-+|-| ..-.
T Consensus 71 gi~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~Pv~veNDan~aalaE~~~g~~~--~~~~~~~i~~gtG-IG~g 147 (314)
T COG1940 71 GIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLPVFVENDANAAALAEAWFGAGR--GIDDVVYITLGTG-IGGG 147 (314)
T ss_pred EeccceeccCCcEEeecCCCCccccccHHHHHHHHHCCCEEEecHHHHHHHHHHHhCCCC--CCCCEEEEEEccc-eeEE
Confidence 5432222 21 2255899999999999999887666555432111111 2245788887766 3344
Q ss_pred EeeCCeEEEEEEEehh
Q 008237 159 IGKRGKVVFCESVNLG 174 (573)
Q Consensus 159 ~~~~~~~~~~~SlplG 174 (573)
++-+|++....+..-|
T Consensus 148 iv~~g~l~~G~~g~ag 163 (314)
T COG1940 148 IIVNGKLLRGANGNAG 163 (314)
T ss_pred EEECCEEeecCCCccc
Confidence 5667777665444333
No 82
>CHL00094 dnaK heat shock protein 70
Probab=88.09 E-value=5.4 Score=45.67 Aligned_cols=106 Identities=17% Similarity=0.269 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHc-CCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceE
Q 008237 69 VESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVL 146 (573)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~l 146 (573)
...|+..++.++.+ |.+..++ +++--|-=. ......+...-+..|+++ ++|+...=|-+.| |... . .+...+
T Consensus 117 a~iL~~l~~~ae~~lg~~v~~~-VItVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay-~~~~--~-~~~~vl 190 (621)
T CHL00094 117 AQVLRKLVEDASKYLGETVTQA-VITVPAYFN-DSQRQATKDAGKIAGLEVLRIINEPTAASLAY-GLDK--K-NNETIL 190 (621)
T ss_pred HHHHHHHHHHHHHHhCCCCCeE-EEEECCCCC-HHHHHHHHHHHHHcCCceEEEeccHHHHHHHh-cccc--C-CCCEEE
Confidence 34456666665443 4432222 222111111 122233444445679995 6888888888776 3221 1 235689
Q ss_pred EEEeCCCceEEEEeeCCeEE-----EEEEEehhHHHHHH
Q 008237 147 SVDIGGGSTEFVIGKRGKVV-----FCESVNLGHVSLSE 180 (573)
Q Consensus 147 viDIGGGStEl~~~~~~~~~-----~~~SlplG~vrl~e 180 (573)
|+|+|||++.+++++-+... .....++|.-.+.+
T Consensus 191 V~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~ 229 (621)
T CHL00094 191 VFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDK 229 (621)
T ss_pred EEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHH
Confidence 99999999999987643221 13345677765554
No 83
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=87.44 E-value=5.8 Score=45.71 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhcc
Q 008237 60 ISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQF 137 (573)
Q Consensus 60 ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~~ 137 (573)
++++-+.. ..|+..++.++.| |.+.. .+|-|--.---.+....+...-+..|+++ ++|+...=|-+.| |.-.
T Consensus 135 ~speeisa--~iL~~Lk~~Ae~~lg~~v~--~aVITVPayF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlay-g~~~- 208 (657)
T PTZ00186 135 YSPSQIGA--FVLEKMKETAENFLGHKVS--NAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAY-GMDK- 208 (657)
T ss_pred EcHHHHHH--HHHHHHHHHHHHHhCCccc--eEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHH-hccC-
Confidence 44444332 2455556666554 44322 33433111111233444555566789996 6899998888877 3321
Q ss_pred CCCCCCceEEEEeCCCceEEEEee--CCeE
Q 008237 138 LPVFDRLVLSVDIGGGSTEFVIGK--RGKV 165 (573)
Q Consensus 138 ~~~~~~~~lviDIGGGStEl~~~~--~~~~ 165 (573)
. .+...+|+|+|||++.+++++ +|.+
T Consensus 209 -~-~~~~vlV~DlGGGT~DvSil~~~~g~~ 236 (657)
T PTZ00186 209 -T-KDSLIAVYDLGGGTFDISVLEIAGGVF 236 (657)
T ss_pred -C-CCCEEEEEECCCCeEEEEEEEEeCCEE
Confidence 1 245689999999999999876 5544
No 84
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=86.59 E-value=12 Score=34.93 Aligned_cols=129 Identities=18% Similarity=0.092 Sum_probs=82.5
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEEe--
Q 008237 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT-- 94 (573)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT-- 94 (573)
.||||.+++++.+++.. | +++.+.+.++. .-.++.++.+.+.++++..... .. -..||.
T Consensus 1 gidig~~~i~~~l~d~~--g--~ii~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~---~~---gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLD--G--EIIYSESIPTP---------TSPEELLDALAELIERLLADYG---RS---GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEETT--S--CEEEEEEEEHH---------SSHHHHHHHHHHHHHHHHHHHT---CE---EEEEEESS
T ss_pred CEEECCCEEEEEEECCC--C--CEEEEEEEECC---------CCHHHHHHHHHHHHHHHHhhcc---cc---cEEEeccc
Confidence 48999999999999864 4 45666665554 1135666666666776665443 21 122332
Q ss_pred -----------hhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCC
Q 008237 95 -----------AAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRG 163 (573)
Q Consensus 95 -----------sA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~ 163 (573)
+..-.-.| -.+.+.++++++++|.+.+.-.=+-+...-.-.... .++.+.+.+|-| ....++.+|
T Consensus 62 ~v~~~~g~i~~~~~~~~~~-~~l~~~l~~~~~~pv~i~Nd~~~~a~ae~~~~~~~~--~~~~~~l~ig~G-iG~~ii~~g 137 (179)
T PF00480_consen 62 IVDSEKGRIISSPNPGWEN-IPLKEELEERFGVPVIIENDANAAALAEYWFGAAKD--CDNFLYLYIGTG-IGAGIIING 137 (179)
T ss_dssp EEETTTTEEEECSSGTGTT-CEHHHHHHHHHTSEEEEEEHHHHHHHHHHHHSTTTT--TSSEEEEEESSS-EEEEEEETT
T ss_pred cCcCCCCeEEecCCCCccc-CCHHHHhhcccceEEEEecCCCcceeehhhcCccCC--cceEEEEEeecC-CCcceeccc
Confidence 22222333 558889999999999999887766555432222212 245899999876 677778888
Q ss_pred eEEEE
Q 008237 164 KVVFC 168 (573)
Q Consensus 164 ~~~~~ 168 (573)
++...
T Consensus 138 ~i~~G 142 (179)
T PF00480_consen 138 KIYRG 142 (179)
T ss_dssp EEETT
T ss_pred ccccC
Confidence 88754
No 85
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=86.29 E-value=1.1 Score=42.77 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=28.6
Q ss_pred HHHHHHHhhcccccC-----------CCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHH
Q 008237 402 LEAACLLHNIGHFTS-----------KKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLT 449 (573)
Q Consensus 402 L~~Aa~LhdiG~~i~-----------~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia 449 (573)
+-+||+|||||..++ ..+|..-++.+|.. + |+.+=..++..-+
T Consensus 46 lvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~---~--F~~~V~~lV~~Hv 99 (179)
T TIGR03276 46 LIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRE---L--FSPSVTEPIRLHV 99 (179)
T ss_pred HHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHH---H--cCHHHHHHHHHHH
Confidence 589999999999887 44566666777642 2 6665444544444
No 86
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=86.22 E-value=4.9 Score=46.09 Aligned_cols=106 Identities=21% Similarity=0.250 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHc-CCCcccEEEEEe-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCc
Q 008237 68 SVESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRL 144 (573)
Q Consensus 68 ~~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~~~~~~~~~ 144 (573)
+...|+..++.++.+ |-+.. .+|-| -|-=. .+....+...-+..|+++ ++|+...=|.+.| |.... .+..
T Consensus 114 ~a~iL~~lk~~ae~~~g~~v~--~~VItVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y-~~~~~---~~~~ 186 (627)
T PRK00290 114 SAMILQKLKKDAEDYLGEKVT--EAVITVPAYFN-DAQRQATKDAGKIAGLEVLRIINEPTAAALAY-GLDKK---GDEK 186 (627)
T ss_pred HHHHHHHHHHHHHHHhCCCCc--eEEEEECCCCC-HHHHHHHHHHHHHcCCceEEEecchHHHHHHh-hhccC---CCCE
Confidence 344566666666554 43322 23333 22111 122233444445679995 6888888887766 33221 3466
Q ss_pred eEEEEeCCCceEEEEeeCCe--EE---EEEEEehhHHHHHH
Q 008237 145 VLSVDIGGGSTEFVIGKRGK--VV---FCESVNLGHVSLSE 180 (573)
Q Consensus 145 ~lviDIGGGStEl~~~~~~~--~~---~~~SlplG~vrl~e 180 (573)
.+|+|+|||+|.+++++-+. +. .....++|...+.+
T Consensus 187 vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~ 227 (627)
T PRK00290 187 ILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQ 227 (627)
T ss_pred EEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHH
Confidence 89999999999998875332 21 11234566655544
No 87
>PRK11678 putative chaperone; Provisional
Probab=85.84 E-value=7.8 Score=42.58 Aligned_cols=87 Identities=23% Similarity=0.358 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHc-CCCcccEEEEEehhhh------hcCCh--HHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccC
Q 008237 69 VESLLMFRDIIQSH-NISRDHTRAVATAAVR------AAENK--DEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFL 138 (573)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R------~A~N~--~~fl~~i~~~tG~~-i~VIsg~eEA~l~~~gv~~~~ 138 (573)
...|+.+++.++.+ |.+.. .+|-|-=.. ...|+ ..++....+..|++ +++++...=|-+.| |. .+
T Consensus 131 a~iL~~lk~~ae~~~g~~v~--~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y-~~--~~ 205 (450)
T PRK11678 131 CAMMLHIKQQAEAQLQAAIT--QAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDF-EA--TL 205 (450)
T ss_pred HHHHHHHHHHHHHHhCCCCC--cEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHh-cc--cc
Confidence 33456666666554 54322 345443222 13333 34566777788998 57899888888877 32 22
Q ss_pred CCCCCceEEEEeCCCceEEEEee
Q 008237 139 PVFDRLVLSVDIGGGSTEFVIGK 161 (573)
Q Consensus 139 ~~~~~~~lviDIGGGStEl~~~~ 161 (573)
+ .++..+|+|+|||++.+++.+
T Consensus 206 ~-~~~~vlV~D~GGGT~D~Svv~ 227 (450)
T PRK11678 206 T-EEKRVLVVDIGGGTTDCSMLL 227 (450)
T ss_pred C-CCCeEEEEEeCCCeEEEEEEE
Confidence 2 245689999999999998875
No 88
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.83 E-value=0.66 Score=53.22 Aligned_cols=54 Identities=22% Similarity=0.141 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHHh
Q 008237 398 DLEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFH 452 (573)
Q Consensus 398 ~r~lL~~Aa~LhdiG~~i~~~~~~khs~yiI~ns~~l~G~s~~E~~~iA~ia~~h 452 (573)
++.+|..||++||||+-= ...|..-++.....-=.-.|++.+|..++|.+|+.|
T Consensus 482 ~~elLylAaLfHDIaKGR-ggDHs~lGA~~a~~fc~~hGL~~~e~~lvaWLVe~H 535 (867)
T COG2844 482 KRELLYLAALFHDIAKGR-GGDHSILGAEDARRFCERHGLNSRETELVAWLVENH 535 (867)
T ss_pred ChhHHHHHHHHHHhhcCC-CCchHHhhHHHHHHHHHHcCCCHHHhHHHHHHHHHH
Confidence 467999999999999875 445667777666432126999999999999999988
No 89
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=84.51 E-value=6.8 Score=44.39 Aligned_cols=108 Identities=20% Similarity=0.290 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHc-CCCcccEEEEEe-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCce
Q 008237 69 VESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLV 145 (573)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~ 145 (573)
...|+..++.++.+ +-+.. .+|-| -|.=.. +....+...-+..|+++ ++|+..+=|-+.| ++.... ..+..
T Consensus 117 ~~~l~~l~~~a~~~~~~~~~--~~vitVPa~~~~-~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y-~~~~~~--~~~~v 190 (602)
T PF00012_consen 117 AMILKYLKEMAEKYLGEKVT--DVVITVPAYFTD-EQRQALRDAAELAGLNVLRLINEPTAAALAY-GLERSD--KGKTV 190 (602)
T ss_dssp HHHHHHHHHHHHHHHTSBEE--EEEEEE-TT--H-HHHHHHHHHHHHTT-EEEEEEEHHHHHHHHT-TTTSSS--SEEEE
T ss_pred ccchhhhcccchhhcccccc--cceeeechhhhh-hhhhcccccccccccccceeecccccccccc-cccccc--cccce
Confidence 34455555555544 43322 23322 222111 12334444445689987 5777666555544 433322 34568
Q ss_pred EEEEeCCCceEEEEee--CCeEE---EEEEEehhHHHHHHhh
Q 008237 146 LSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSEKF 182 (573)
Q Consensus 146 lviDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e~f 182 (573)
+|+|+|||++.+++++ ++.+. ...+-.+|.-.+.+.+
T Consensus 191 lv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l 232 (602)
T PF00012_consen 191 LVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEAL 232 (602)
T ss_dssp EEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHH
T ss_pred eccccccceEeeeehhcccccccccccccccccccceeccee
Confidence 9999999999988764 55442 2334567776665543
No 90
>PRK13321 pantothenate kinase; Reviewed
Probab=84.42 E-value=26 Score=35.25 Aligned_cols=130 Identities=16% Similarity=0.249 Sum_probs=69.2
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEEe
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (573)
+-+||||-.++++-+++ . + +++.+.+.++....+ . + +.+..+.++++.++.+..++..++-
T Consensus 2 iL~IDIGnT~ik~gl~~-~--~--~i~~~~~~~T~~~~~--------~---~---~~~~~l~~l~~~~~~~~~~i~~i~v 62 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-G--D--RLLRSFRLPTDKSRT--------S---D---ELGILLLSLFRHAGLDPEDIRAVVI 62 (256)
T ss_pred EEEEEECCCeEEEEEEE-C--C--EEEEEEEEecCCCCC--------H---H---HHHHHHHHHHHHcCCChhhCCeEEE
Confidence 35799999999999986 2 2 345444443322111 1 1 2233334444455543334555555
Q ss_pred hhhhhcCChHHHHHHHHHHcCCcEEEeChH-----HHHH-----------HHHhhhhccCCCCCCceEEEEeCCCceEEE
Q 008237 95 AAVRAAENKDEFVECVREKVGFEVDVLTGE-----QEAK-----------FVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (573)
Q Consensus 95 sA~R~A~N~~~fl~~i~~~tG~~i~VIsg~-----eEA~-----------l~~~gv~~~~~~~~~~~lviDIGGGStEl~ 158 (573)
+.+..+. ...+.+.+.+..+.++.+++.. +.+| ....|+....+ .++.+|+|.|..-|==+
T Consensus 63 ssVvp~~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~y~~P~~lG~DR~a~~~aa~~~~~--~~~~lvid~GTA~T~d~ 139 (256)
T PRK13321 63 SSVVPPL-NYSLESACKRYFGIKPLFVGPGIKTGLKIRYDNPREVGADRIVNAVAARRLYP--DRNLIVVDFGTATTFDC 139 (256)
T ss_pred EeecccH-HHHHHHHHHHHhCCCeEEECCCCCCCcccccCChhhccHHHHHHHHHHHHHcC--CCCEEEEECCCceEEEE
Confidence 5576443 4456665666667777665321 1111 22223322222 23689999999988655
Q ss_pred EeeCCeEE
Q 008237 159 IGKRGKVV 166 (573)
Q Consensus 159 ~~~~~~~~ 166 (573)
+-.+|+..
T Consensus 140 v~~~g~~~ 147 (256)
T PRK13321 140 VSGKGEYL 147 (256)
T ss_pred EcCCCcEE
Confidence 54555544
No 91
>PRK13410 molecular chaperone DnaK; Provisional
Probab=84.39 E-value=11 Score=43.71 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhc
Q 008237 59 SISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQ 136 (573)
Q Consensus 59 ~ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~-i~VIsg~eEA~l~~~gv~~ 136 (573)
.++++.+ +...|+..++.+..+ |.+..+ .+++--|.=... ....+...-+..|++ +++|+...=|-+.| |...
T Consensus 109 ~~speel--~a~iL~~lk~~ae~~lg~~v~~-~VITVPa~f~~~-qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-g~~~ 183 (668)
T PRK13410 109 EFAPEEL--SAMILRKLADDASRYLGEPVTG-AVITVPAYFNDS-QRQATRDAGRIAGLEVERILNEPTAAALAY-GLDR 183 (668)
T ss_pred EEcHHHH--HHHHHHHHHHHHHHHhCCCcce-EEEEECCCCCHH-HHHHHHHHHHHcCCCeEEEecchHHHHHHh-cccc
Confidence 3455433 345566666666554 433222 223222221111 223344444567999 45889998888876 3322
Q ss_pred cCCCCCCceEEEEeCCCceEEEEee
Q 008237 137 FLPVFDRLVLSVDIGGGSTEFVIGK 161 (573)
Q Consensus 137 ~~~~~~~~~lviDIGGGStEl~~~~ 161 (573)
. .+...+|+|+|||++.+++++
T Consensus 184 ~---~~~~vlV~DlGgGT~Dvsv~~ 205 (668)
T PRK13410 184 S---SSQTVLVFDLGGGTFDVSLLE 205 (668)
T ss_pred C---CCCEEEEEECCCCeEEEEEEE
Confidence 1 235689999999999998876
No 92
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=84.34 E-value=6.7 Score=44.92 Aligned_cols=113 Identities=21% Similarity=0.243 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCCcccEEEEEe-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhh
Q 008237 59 SISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVL 135 (573)
Q Consensus 59 ~ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~ 135 (573)
.++++. -....|+..++.++.+ |-+.. .+|-| -|.=. .+....+...-+..|+++ ++|+...=|-+.| |.-
T Consensus 123 ~~~p~e--i~a~iL~~lk~~ae~~lg~~v~--~~VITVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~ 196 (616)
T PRK05183 123 LKSPVE--VSAEILKALRQRAEETLGGELD--GAVITVPAYFD-DAQRQATKDAARLAGLNVLRLLNEPTAAAIAY-GLD 196 (616)
T ss_pred eEcHHH--HHHHHHHHHHHHHHHHhCCCcc--eEEEEECCCCC-HHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-hcc
Confidence 344443 3345677777766654 43222 33333 22111 123344455556789997 6888888888776 332
Q ss_pred ccCCCCCCceEEEEeCCCceEEEEee--CCeEE---EEEEEehhHHHHHH
Q 008237 136 QFLPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSE 180 (573)
Q Consensus 136 ~~~~~~~~~~lviDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e 180 (573)
. . .+...+|+|+|||++.+++++ ++.+. ....-.+|.--+.+
T Consensus 197 ~--~-~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~ 243 (616)
T PRK05183 197 S--G-QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDH 243 (616)
T ss_pred c--C-CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHH
Confidence 2 1 235689999999999998876 34321 11224566655544
No 93
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=84.26 E-value=6.9 Score=44.54 Aligned_cols=88 Identities=22% Similarity=0.269 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHc-CCCcccEEEEEe-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCc
Q 008237 68 SVESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRL 144 (573)
Q Consensus 68 ~~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~~~~~~~~~ 144 (573)
+...|+..++.+..+ |-+.. .+|-| -|.=. .+....+...-+..|+++ ++|+...=|-+.| |.... ..+..
T Consensus 111 ~a~~L~~l~~~a~~~~~~~v~--~~VItVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y-~~~~~--~~~~~ 184 (595)
T TIGR02350 111 SAMILQKLKKDAEAYLGEKVT--EAVITVPAYFN-DAQRQATKDAGKIAGLEVLRIINEPTAAALAY-GLDKS--KKDEK 184 (595)
T ss_pred HHHHHHHHHHHHHHHhCCCCC--eEEEEECCCCC-HHHHHHHHHHHHHcCCceEEEecchHHHHHHH-hhccc--CCCcE
Confidence 344566666666554 43322 23333 22111 222333444455679995 6788887777766 43221 12456
Q ss_pred eEEEEeCCCceEEEEee
Q 008237 145 VLSVDIGGGSTEFVIGK 161 (573)
Q Consensus 145 ~lviDIGGGStEl~~~~ 161 (573)
.+|+|+|||++.+++.+
T Consensus 185 vlV~D~Gggt~dvsv~~ 201 (595)
T TIGR02350 185 ILVFDLGGGTFDVSILE 201 (595)
T ss_pred EEEEECCCCeEEEEEEE
Confidence 89999999999998875
No 94
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=83.50 E-value=3.5 Score=46.04 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=45.1
Q ss_pred CeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCcccE
Q 008237 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHT 89 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i 89 (573)
+++..||+||.|+|..+++. +|+. +.....+...-......| +..++. .+.+++++++ ++++.+++..+|
T Consensus 3 ~~~lgID~GTts~Ka~l~d~--~G~~--l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~---~~~~~~~~~~~I 75 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDL--NGNQ--IAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQ---ALQKAGIPASDI 75 (520)
T ss_pred cEEEEEecCCCceEEEEECC--CCCE--EEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHH---HHHHcCCCccce
Confidence 37889999999999999974 4543 333332221110111122 334444 3445555544 444456665679
Q ss_pred EEEEehhhh
Q 008237 90 RAVATAAVR 98 (573)
Q Consensus 90 ~~vATsA~R 98 (573)
.+++.++.+
T Consensus 76 ~aI~~s~~~ 84 (520)
T PRK10939 76 AAVSATSMR 84 (520)
T ss_pred EEEEEECCc
Confidence 999877653
No 95
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=82.56 E-value=11 Score=43.69 Aligned_cols=106 Identities=16% Similarity=0.234 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHc-CCCcccEEEEEe-hhhhhcCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCCCCCCc
Q 008237 68 SVESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRL 144 (573)
Q Consensus 68 ~~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~i~~~tG~~-i~VIsg~eEA~l~~~gv~~~~~~~~~~ 144 (573)
+...|+..++.++.+ |.+.. .+|-| -|.=.. .....+...-+..|++ +++|+...=|-+.| |... . ....
T Consensus 155 ~a~iL~~lk~~ae~~lg~~v~--~~VITVPa~f~~-~qR~a~~~Aa~~AGl~v~~li~EptAAAlay-~~~~--~-~~~~ 227 (663)
T PTZ00400 155 GAFVLEKMKETAESYLGRKVK--QAVITVPAYFND-SQRQATKDAGKIAGLDVLRIINEPTAAALAF-GMDK--N-DGKT 227 (663)
T ss_pred HHHHHHHHHHHHHHHhCCCCc--eEEEEECCCCCH-HHHHHHHHHHHHcCCceEEEeCchHHHHHHh-cccc--C-CCcE
Confidence 344566667666554 44322 33433 222111 2233344445567999 46888888777766 4322 1 2356
Q ss_pred eEEEEeCCCceEEEEee--CCeEE---EEEEEehhHHHHHH
Q 008237 145 VLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSE 180 (573)
Q Consensus 145 ~lviDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e 180 (573)
.+|+|+|||++.+++++ ++.+. .....++|...+.+
T Consensus 228 vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~ 268 (663)
T PTZ00400 228 IAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQ 268 (663)
T ss_pred EEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHH
Confidence 89999999999999875 55432 12233566555544
No 96
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=82.47 E-value=4 Score=42.90 Aligned_cols=35 Identities=37% Similarity=0.516 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhccc
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~ 413 (573)
.|+--|+.+|..+...|. + + ..++++||++||||.
T Consensus 65 ~Hsl~V~~iar~~~~~l~----~-----------~---~~l~~aaaL~HDiGh 99 (336)
T PRK01286 65 THTLEVAQIARTIARALR----L-----------N---EDLTEAIALGHDLGH 99 (336)
T ss_pred HHHHHHHHHHHHHHHHhC----C-----------C---HHHHHHHHHHhcCCC
Confidence 799999999999877652 1 1 268999999999995
No 97
>PLN03184 chloroplast Hsp70; Provisional
Probab=82.27 E-value=12 Score=43.29 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=44.5
Q ss_pred HHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCC--eEE---EEEEEehhHHHHHH
Q 008237 107 VECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRG--KVV---FCESVNLGHVSLSE 180 (573)
Q Consensus 107 l~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~--~~~---~~~SlplG~vrl~e 180 (573)
+...-+..|+++ ++|+...=|.+.| |... . .+...+|+|+|||++.+++.+-+ .+. .....++|.-.+.+
T Consensus 191 ~~~Aa~~AGl~v~~li~EPtAAAlay-g~~~--~-~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~ 266 (673)
T PLN03184 191 TKDAGRIAGLEVLRIINEPTAASLAY-GFEK--K-SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDK 266 (673)
T ss_pred HHHHHHHCCCCeEEEeCcHHHHHHHh-hccc--C-CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHH
Confidence 444455679995 5788887777766 3321 1 23568999999999999887533 221 12235677665554
No 98
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=81.91 E-value=2.8 Score=37.06 Aligned_cols=33 Identities=24% Similarity=0.518 Sum_probs=25.5
Q ss_pred eEEEEeCCCceEEEEeeCCeEEEEEEEehhHHH
Q 008237 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVS 177 (573)
Q Consensus 145 ~lviDIGGGStEl~~~~~~~~~~~~SlplG~vr 177 (573)
.+++|||++.|-+++++.+...+...+|+|...
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~ 33 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVP 33 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES-----
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEeccc
Confidence 368999999999999999999999999999543
No 99
>PRK13318 pantothenate kinase; Reviewed
Probab=81.78 E-value=20 Score=36.13 Aligned_cols=128 Identities=12% Similarity=0.177 Sum_probs=67.3
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEEe
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (573)
+-+||||-..+++-+++ ++ +++++.+.++.... +.+. .+..+.++++.++.+..++..++=
T Consensus 2 iL~IDIGnT~iK~al~d---~g--~i~~~~~~~t~~~~--------~~~~------~~~~l~~l~~~~~~~~~~i~~I~i 62 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE---GG--KLVAHWRISTDSRR--------TADE------YGVWLKQLLGLSGLDPEDITGIII 62 (258)
T ss_pred EEEEEECCCcEEEEEEE---CC--EEEEEEEEeCCCCC--------CHHH------HHHHHHHHHHHcCCCcccCceEEE
Confidence 45799999999999997 23 34444433322111 1122 223344555666653224555665
Q ss_pred hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHH-----------------HHHHhhhhccCCCCCCceEEEEeCCCceE
Q 008237 95 AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEA-----------------KFVYMGVLQFLPVFDRLVLSVDIGGGSTE 156 (573)
Q Consensus 95 sA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA-----------------~l~~~gv~~~~~~~~~~~lviDIGGGStE 156 (573)
+.+....+ +.+.+.++...+.++ -+.+ .++. .....|+....+ ++.+|+|.|.+-|=
T Consensus 63 ssVvp~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~gl~~~y~np~~lG~DR~a~~~aa~~~~~---~~~ivid~GTA~t~ 137 (258)
T PRK13318 63 SSVVPSVM-HSLERMCRKYFNIEPLVVVG-PGVKTGINIKVDNPKEVGADRIVNAVAAYELYG---GPLIVVDFGTATTF 137 (258)
T ss_pred EEecCchH-HHHHHHHHHHhCCCCeEEEC-CCcCCCCceecCChhhcchHHHHHHHHHHHHcC---CCEEEEEcCCceEE
Confidence 55664333 444455554444433 2222 1111 122333333332 36899999999987
Q ss_pred EEEeeCCeEE
Q 008237 157 FVIGKRGKVV 166 (573)
Q Consensus 157 l~~~~~~~~~ 166 (573)
=++-.+|+..
T Consensus 138 d~v~~~g~~~ 147 (258)
T PRK13318 138 DVVSAKGEYL 147 (258)
T ss_pred EEEcCCCcEE
Confidence 6665666544
No 100
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=81.13 E-value=1.5 Score=45.74 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK 418 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~~ 418 (573)
.|.-.|+++|..+.+... .-+|.||-++|+|||||+...++
T Consensus 162 eHtl~v~~~~~~l~~~y~-----------------~~n~dll~agalLHDiGKi~E~~ 202 (314)
T PRK13480 162 YHVVSMLRLAKSICDLYP-----------------SLNKDLLYAGIILHDLGKVIELS 202 (314)
T ss_pred HHHHHHHHHHHHHHHhcc-----------------ccCHHHHHHHHHHHHhhhHHHhc
Confidence 577788888887654321 12367999999999999866544
No 101
>PRK00047 glpK glycerol kinase; Provisional
Probab=80.88 E-value=5.7 Score=44.13 Aligned_cols=77 Identities=16% Similarity=0.273 Sum_probs=44.4
Q ss_pred CeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHHH-HHHHHHHHHHHHHHHHcCCCcccE
Q 008237 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQSQ-ARSVESLLMFRDIIQSHNISRDHT 89 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~i-~r~~~~L~~f~~~~~~~~v~~~~i 89 (573)
+++..||+||.|+|..+++. +|+. +.....++.+ .....| ...++.+ +.+++++ ++++++.+++..+|
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~--~g~~--~~~~~~~~~~--~~~~~g~~e~d~~~~~~~~~~~~---~~~~~~~~~~~~~I 75 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDH--DGNI--VSVAQKEFTQ--IFPQPGWVEHDPNEIWASQLSVI---AEALAKAGISPDQI 75 (498)
T ss_pred CEEEEEecCCCceEEEEECC--CCCE--EEEEeeeccc--cCCCCCeEeeCHHHHHHHHHHHH---HHHHHHcCCChhHe
Confidence 46889999999999999974 4543 3333333222 111123 3344443 3334444 44455567765678
Q ss_pred EEEEehhhh
Q 008237 90 RAVATAAVR 98 (573)
Q Consensus 90 ~~vATsA~R 98 (573)
.+|+-++.+
T Consensus 76 ~~Igis~~~ 84 (498)
T PRK00047 76 AAIGITNQR 84 (498)
T ss_pred eEEEEecCc
Confidence 888876663
No 102
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=80.44 E-value=9 Score=43.66 Aligned_cols=88 Identities=22% Similarity=0.345 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHc-CCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCce
Q 008237 68 SVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLV 145 (573)
Q Consensus 68 ~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~ 145 (573)
+...|+.+++.++.+ |-+. ..+|-|=-..--.++...+...-+..|+++ ++|+...=|-+.| |... . .++..
T Consensus 122 ~a~iL~~lk~~ae~~lg~~v--~~aVITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~~--~-~~~~v 195 (595)
T PRK01433 122 AAEIFIYLKNQAEEQLKTNI--TKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAY-GLNK--N-QKGCY 195 (595)
T ss_pred HHHHHHHHHHHHHHHhCCCc--ceEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHH-hccc--C-CCCEE
Confidence 345677777777655 4322 244544222222234455555666789995 6888888888876 4322 1 23458
Q ss_pred EEEEeCCCceEEEEee
Q 008237 146 LSVDIGGGSTEFVIGK 161 (573)
Q Consensus 146 lviDIGGGStEl~~~~ 161 (573)
+|+|+|||++.+++++
T Consensus 196 lV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 196 LVYDLGGGTFDVSILN 211 (595)
T ss_pred EEEECCCCcEEEEEEE
Confidence 9999999999999876
No 103
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=80.37 E-value=23 Score=35.74 Aligned_cols=127 Identities=20% Similarity=0.283 Sum_probs=74.7
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHH-HHHHHHHcCCCccc--EEEEE
Q 008237 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLM-FRDIIQSHNISRDH--TRAVA 93 (573)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~-f~~~~~~~~v~~~~--i~~vA 93 (573)
-||.|+.+++.++++. +|. ++.+.. .....+....++.+.+.|+. +.+++++.+.+..+ ..+++
T Consensus 2 GIDgGgTkt~~vl~d~--~g~--il~~~~---------~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g 68 (271)
T PF01869_consen 2 GIDGGGTKTKAVLVDE--NGN--ILGRGK---------GGGANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIG 68 (271)
T ss_dssp EEEECSSEEEEEEEET--TSE--EEEEEE---------ES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred EEeeChheeeeEEEeC--CCC--EEEEEE---------eCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeee
Confidence 4999999999999975 343 332221 11122333344454544432 34555555665433 45567
Q ss_pred ehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEE
Q 008237 94 TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (573)
Q Consensus 94 TsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (573)
++.+=.+.+...|...+... ++.+.+--.- ...+. .. ++++++=-|.||.=+.+-+++++...
T Consensus 69 ~aG~~~~~~~~~~~~~~~~~---~v~~~~Da~~---al~~~---~~---~~giv~I~GTGS~~~~~~~~g~~~r~ 131 (271)
T PF01869_consen 69 AAGYGRAGDEQEFQEEIVRS---EVIVVNDAAI---ALYGA---TA---EDGIVVIAGTGSIAYGRDRDGRVIRF 131 (271)
T ss_dssp EEEEEETTTTTHHHHHHHHH---EEEEEEHHHH---HHHHH---ST---SSEEEEEESSSEEEEEEETTSEEEEE
T ss_pred EeeecCcccccchhhcceEE---EEEEEHHHHH---HhCCC---CC---CcEEEEEcCCCceEEEEEcCCcEEEe
Confidence 77777777777777666655 7777776433 33332 22 23677777888888877667876643
No 104
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=80.31 E-value=8.2 Score=40.85 Aligned_cols=137 Identities=18% Similarity=0.138 Sum_probs=74.6
Q ss_pred CCCCeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccE
Q 008237 10 IPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHT 89 (573)
Q Consensus 10 ~~~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i 89 (573)
++...+..||.||.+.++++.+- +. .+.+.+... ..+ .+. +.+++++-.+ +.+....+|
T Consensus 132 ~~~~~~LGID~GSTtTK~VLm~d---~~-~I~~~~~~~---t~g-------~p~----~~~~l~~~le---~l~~~~~~I 190 (396)
T COG1924 132 YQGMYTLGIDSGSTTTKAVLMED---GK-EILYGFYVS---TKG-------RPI----AEKALKEALE---ELGEKLEEI 190 (396)
T ss_pred hcCcEEEEEecCCcceeEEEEeC---CC-eEEEEEEEc---CCC-------Chh----HHHHHHHHHH---HcccChhee
Confidence 34567899999999999999963 22 333333111 111 122 2333333322 333331234
Q ss_pred EEEE-ehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEE
Q 008237 90 RAVA-TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (573)
Q Consensus 90 ~~vA-TsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (573)
-.++ |-==|+.-+...+.|.+ ..|----++|+....|..+ .|+||||-=+-.+..++|.+...
T Consensus 191 ~~~~~TGYGR~~v~~~~~aD~~-------------~~Ei~ah~kgA~~f~p~~d---tIiDIGGQD~K~i~i~dG~v~df 254 (396)
T COG1924 191 LGLGVTGYGRNLVGAALGADKV-------------VVEISAHAKGARYFAPDVD---TVIDIGGQDSKVIKLEDGKVDDF 254 (396)
T ss_pred eeeeeecccHHHhhhhhcCCcc-------------eeeeehhHHHHHHhCCCCc---EEEEecCcceeEEEEeCCeeeee
Confidence 3333 33224433322233322 2344456778887766332 99999999999999999987522
Q ss_pred E---EEehhHHHHHHhhc
Q 008237 169 E---SVNLGHVSLSEKFG 183 (573)
Q Consensus 169 ~---SlplG~vrl~e~f~ 183 (573)
. -=.-|+-|+-|.+-
T Consensus 255 ~mN~~CAAGtGrFLE~~A 272 (396)
T COG1924 255 TMNDKCAAGTGRFLEVIA 272 (396)
T ss_pred EeccccccccchHHHHHH
Confidence 1 11335556666553
No 105
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=80.06 E-value=7.1 Score=32.65 Aligned_cols=84 Identities=13% Similarity=0.256 Sum_probs=47.3
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEEe
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (573)
+-+||+|...+++.+.+- +|. ++...+.+.. .+ .. +.+..+.++++++.+ ...+++.
T Consensus 3 ilgiD~Ggt~i~~a~~d~--~g~--~~~~~~~~~~--~~-----------~~---~~~~~l~~~i~~~~~---~~i~Ig~ 59 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDE--TGK--LADPLEVIPR--TN-----------KE---ADAARLKKLIKKYQP---DLIVIGL 59 (99)
T ss_pred EEEEccCCCeEEEEEECC--CCC--EecCEEEEEe--cC-----------cc---hHHHHHHHHHHHhCC---CEEEEeC
Confidence 568999999999999853 444 2333333322 00 01 123334444455554 2466773
Q ss_pred hh-----hhhcCChHHHHHHHHHHcCCcEEEeC
Q 008237 95 AA-----VRAAENKDEFVECVREKVGFEVDVLT 122 (573)
Q Consensus 95 sA-----~R~A~N~~~fl~~i~~~tG~~i~VIs 122 (573)
.. +...-+ ..|.+.+++.+|+++.+.+
T Consensus 60 pg~v~g~~~~~~~-~~l~~~l~~~~~~pv~~~n 91 (99)
T smart00732 60 PLNMNGTASRETE-EAFAELLKERFNLPVVLVD 91 (99)
T ss_pred CcCCCCCcCHHHH-HHHHHHHHHhhCCcEEEEe
Confidence 22 111123 6777888888899888765
No 106
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=79.85 E-value=7.9 Score=42.62 Aligned_cols=77 Identities=12% Similarity=0.278 Sum_probs=44.1
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHHH-HHHHHHHHHHHHHHHHcCCCcccEE
Q 008237 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQSQ-ARSVESLLMFRDIIQSHNISRDHTR 90 (573)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~i-~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (573)
++.+||+||.|+|..+++. +|+.. ...+.+..........| +.+++.+ +.+++++++... + +++.+|.
T Consensus 2 ~ilgiD~GTss~K~~l~d~--~g~~v--a~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~---~--~~~~~I~ 72 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR--QGKIV--ASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINS---E--LTEKHIR 72 (465)
T ss_pred eEEEEecCCCcEEEEEEcC--CCCEE--EEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHh---h--cChhceE
Confidence 4678999999999999984 46543 33333322111111122 3455554 455555666542 2 3334689
Q ss_pred EEEehhhhh
Q 008237 91 AVATAAVRA 99 (573)
Q Consensus 91 ~vATsA~R~ 99 (573)
+|+.++.+.
T Consensus 73 aI~~s~~~~ 81 (465)
T TIGR02628 73 GIAVTTFGV 81 (465)
T ss_pred EEEEecccc
Confidence 998877654
No 107
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=79.61 E-value=74 Score=32.64 Aligned_cols=131 Identities=20% Similarity=0.163 Sum_probs=72.5
Q ss_pred EEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEEeh
Q 008237 16 ASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATA 95 (573)
Q Consensus 16 AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATs 95 (573)
-.|||||.++++++.+. ++++.... .+ + ..++..++-|+... ..++. ...+.+|-
T Consensus 3 iGiDiGgT~~Kiv~~~~--~~~~~f~~---~~---------~-----~~~~~~~~~l~~~~---~~~~~---~~~i~~TG 57 (279)
T TIGR00555 3 IGIDIGGTLIKVVYEEP--KGRRKFKT---FE---------T-----TNIDKFIEWLKNQI---HRHSR---ITTLCATG 57 (279)
T ss_pred EEEEeCcceEEEEEEcC--CCcEEEEE---ee---------c-----ccHHHHHHHHHHHH---HhhcC---ceEEEEEC
Confidence 47999999999999752 44432111 11 1 11333444444333 22222 23344552
Q ss_pred hhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCC----CCCceEEEEeCCCceEEEEeeCCeEEEEEEE
Q 008237 96 AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPV----FDRLVLSVDIGGGSTEFVIGKRGKVVFCESV 171 (573)
Q Consensus 96 A~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~----~~~~~lviDIGGGStEl~~~~~~~~~~~~Sl 171 (573)
..+-.|-+.++...|+++. -.+|-.-...|+..-++. +-.+.+++.||.| |-++.+++.+..+.---
T Consensus 58 -----gGa~k~~~~~~~~~~v~~~---k~dE~~a~~~g~~~ll~~~~~~~~~p~llvnIGsG-vSi~~v~~~~~~Rv~Gt 128 (279)
T TIGR00555 58 -----GGAFKFAELIYESAGIQLH---KFDEFDALIQGLNYLLKEEPKDDIYPYLLVNIGTG-TSILYVDGDNYERVGGT 128 (279)
T ss_pred -----CcHHHHHHHhccccCCccc---chhHHHHHHHHHHHHhhcccCCCCCceEEEEecCC-eEEEEEcCccEEEEcCc
Confidence 2334566777776665542 234444455555443321 1235799999887 88888886666655555
Q ss_pred ehhHHHHHH
Q 008237 172 NLGHVSLSE 180 (573)
Q Consensus 172 plG~vrl~e 180 (573)
.+|--.+-.
T Consensus 129 ~iGGGTf~G 137 (279)
T TIGR00555 129 SLGGGTFLG 137 (279)
T ss_pred cccHHHHHH
Confidence 677666554
No 108
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=79.44 E-value=7.2 Score=43.17 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=50.8
Q ss_pred CCeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCcccEE
Q 008237 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSI-STQSQARSVESLLMFRDIIQSHNISRDHTR 90 (573)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~l-s~e~i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (573)
.+.++.||+||.|.|..|++.. +|.. +.....+++-...-..-..- +.|-.+..++||+.-.+.+...+.....+.
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~-~~e~--l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~ 81 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAK-NGEL--LSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGAT 81 (516)
T ss_pred cceEEEEEcCCCceEEEEEecC-CCcc--ceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccE
Confidence 4689999999999999999865 3432 22222222221111111122 456667778888887777766666555566
Q ss_pred EEEehhhhh
Q 008237 91 AVATAAVRA 99 (573)
Q Consensus 91 ~vATsA~R~ 99 (573)
+++..--|+
T Consensus 82 ~igv~~qr~ 90 (516)
T KOG2517|consen 82 CIGVVNQRE 90 (516)
T ss_pred EEEEEecCC
Confidence 666554444
No 109
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=79.34 E-value=12 Score=42.40 Aligned_cols=96 Identities=15% Similarity=0.207 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhcc
Q 008237 59 SISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQF 137 (573)
Q Consensus 59 ~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~-i~VIsg~eEA~l~~~gv~~~ 137 (573)
.++++.+. ...|+.+++.++.+--...+ .+|-|=-.--...+..-....-+..|++ +++|+...=|-|.| |.-..
T Consensus 94 ~~~~eeis--a~~L~~lk~~ae~~lg~~v~-~~VItVPayF~d~qR~at~~A~~iaGl~vlrlinEPtAAAlay-g~~~~ 169 (579)
T COG0443 94 KYTPEEIS--AMILTKLKEDAEAYLGEKVT-DAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAY-GLDKG 169 (579)
T ss_pred eeCHHHHH--HHHHHHHHHHHHHhhCCCcc-eEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-HhccC
Confidence 45555543 45677777777776433222 4455522222222344444555566776 67899988888887 33322
Q ss_pred CCCCCCceEEEEeCCCceEEEEee
Q 008237 138 LPVFDRLVLSVDIGGGSTEFVIGK 161 (573)
Q Consensus 138 ~~~~~~~~lviDIGGGStEl~~~~ 161 (573)
.+...+|+|+|||.+.+++.+
T Consensus 170 ---~~~~vlV~DlGGGTfDvSll~ 190 (579)
T COG0443 170 ---KEKTVLVYDLGGGTFDVSLLE 190 (579)
T ss_pred ---CCcEEEEEEcCCCCEEEEEEE
Confidence 345699999999999999865
No 110
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=78.98 E-value=52 Score=33.90 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=79.7
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccE--EEEEe
Q 008237 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHT--RAVAT 94 (573)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i--~~vAT 94 (573)
.||||.+.+++.+++.. |. ++.+.+.+.. .-.++.++.+.+.+++|.+-+ +.+..++ ..||+
T Consensus 2 gidig~t~~~~~l~d~~--g~--i~~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~---~~~~~~i~gIgva~ 65 (318)
T TIGR00744 2 GVDIGGTTIKLGVVDEE--GN--ILSKWKVPTD---------TTPETIVDAIASAVDSFIQHI---AKVGHEIVAIGIGA 65 (318)
T ss_pred EEEeCCCEEEEEEECCC--CC--EEEEEEeCCC---------CCHHHHHHHHHHHHHHHHHhc---CCCccceEEEEEec
Confidence 68999999999999763 43 3444333221 114566777777887776533 3322233 34444
Q ss_pred hhhhhc--------C----ChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeC
Q 008237 95 AAVRAA--------E----NKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKR 162 (573)
Q Consensus 95 sA~R~A--------~----N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~ 162 (573)
...=+. . +.-.+.+.+++++|++|-+.+.-.=+-+.-.-.-... ..++.+++.+|.|. -..++.+
T Consensus 66 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~~~alaE~~~g~~~--~~~~~~~v~igtGi-G~giv~~ 142 (318)
T TIGR00744 66 PGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPVVVENDANAAALGEYKKGAGK--GARDVICITLGTGL-GGGIIIN 142 (318)
T ss_pred cccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCEEEechHHHHHHHHHHhcccC--CCCcEEEEEeCCcc-EEEEEEC
Confidence 432221 1 2335778899999999998887666555332111111 23568999999887 5556667
Q ss_pred CeEEE
Q 008237 163 GKVVF 167 (573)
Q Consensus 163 ~~~~~ 167 (573)
|++..
T Consensus 143 G~~~~ 147 (318)
T TIGR00744 143 GEIRH 147 (318)
T ss_pred CEEee
Confidence 77764
No 111
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=78.82 E-value=2.4 Score=45.44 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccc--------------cC---CCCchhh
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF--------------TS---KKGYHKQ 423 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~--------------i~---~~~~~kh 423 (573)
.|+--|+.+|..|...+..... ... ........++++||++||||.. -. ...|..+
T Consensus 41 tHslev~~i~r~~~~~l~~~~~--~~~-----~~~~~~~~l~~~a~L~HDiGhpPfgH~gE~~l~~~~~~~g~~f~~n~q 113 (381)
T TIGR01353 41 THSLEVAQVGRSIANLIGLRYD--LEL-----EELGPFERLAETACLAHDIGNPPFGHAGERALNDWMREYGPGFEGNAQ 113 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc--ccc-----ccccccHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhcCCCCChHHH
Confidence 7999999999999887754211 000 0112345799999999999952 22 3467778
Q ss_pred hHHHHHcCCC----CCCCCHHHHHHHHHHHHHhc
Q 008237 424 SCHIIMNGDH----LYGYSTDEIKLIALLTRFHR 453 (573)
Q Consensus 424 s~yiI~ns~~----l~G~s~~E~~~iA~ia~~hr 453 (573)
|+-|+..-+. ..|++- -...++.++.|-.
T Consensus 114 ~~ri~~~Le~~~~~~~GLNL-T~~tL~~i~KYp~ 146 (381)
T TIGR01353 114 TFRILTTLEKRRRAKGGLNL-TWRTLAGILKYPR 146 (381)
T ss_pred HHHHHHHHhhccCCcCCcCC-CHHHHHHHHcCCc
Confidence 8888865321 235543 2345666676654
No 112
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=78.17 E-value=27 Score=40.37 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHc-CCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceE
Q 008237 69 VESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVL 146 (573)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~l 146 (573)
...|+..++.++.+ |-+..+ .+++.-|.=. .+....+...-+..|+++ ++|+...=|-+.|- ...... .+...+
T Consensus 122 a~iL~~lk~~ae~~~g~~v~~-~VItVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~-~~~~~~-~~~~vl 197 (653)
T PTZ00009 122 SMVLQKMKEIAEAYLGKQVKD-AVVTVPAYFN-DSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG-LDKKGD-GEKNVL 197 (653)
T ss_pred HHHHHHHHHHHHHHhCCCcce-eEEEeCCCCC-HHHHHHHHHHHHHcCCceeEEecchHHHHHHHh-hhccCC-CCCEEE
Confidence 34566666666655 433222 2233222111 122344555556779995 68888888877763 322211 245689
Q ss_pred EEEeCCCceEEEEee
Q 008237 147 SVDIGGGSTEFVIGK 161 (573)
Q Consensus 147 viDIGGGStEl~~~~ 161 (573)
|+|+|||++.+++++
T Consensus 198 v~D~GggT~dvsv~~ 212 (653)
T PTZ00009 198 IFDLGGGTFDVSLLT 212 (653)
T ss_pred EEECCCCeEEEEEEE
Confidence 999999999998865
No 113
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=77.65 E-value=1.4 Score=39.08 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=19.7
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEE
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTI 41 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i 41 (573)
+++|||||.++++.|++....+..+++
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl 27 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVL 27 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEE
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEE
Confidence 589999999999999987544444444
No 114
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=77.19 E-value=7.5 Score=42.38 Aligned_cols=76 Identities=11% Similarity=0.178 Sum_probs=46.5
Q ss_pred CCeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEE
Q 008237 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (573)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (573)
.+++.+||-|+.|.|..|++-+ |++ +....+.. -.-.-+.|-.-.++.+---.++.-..+.+.+.++++.+|.+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~--g~i--va~~q~e~--~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaa 77 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDED--GNI--VAIAQREF--TQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAA 77 (499)
T ss_pred ccEEEEEecCCcceeEEEECCC--CCc--hhhhhhhh--hhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEE
Confidence 4689999999999999999653 433 22122111 11122335555455444444455555666667888888888
Q ss_pred EE
Q 008237 92 VA 93 (573)
Q Consensus 92 vA 93 (573)
+|
T Consensus 78 IG 79 (499)
T COG0554 78 IG 79 (499)
T ss_pred EE
Confidence 87
No 115
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=76.79 E-value=12 Score=41.54 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=43.9
Q ss_pred CCeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCH-HHHHHHHHHHHHHHHHHHHcCCCccc
Q 008237 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SIST-QSQARSVESLLMFRDIIQSHNISRDH 88 (573)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~-e~i~r~~~~L~~f~~~~~~~~v~~~~ 88 (573)
.+++.+||+|+.++|.++++.+. + +++...+..-..-. ...| .-++ +-.+.+++++++..+ +..++..+
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~~-~--~~~~~~~~~~~~~~--~~~g~~e~d~~~~w~~~~~ai~~l~~---~~~~~~~~ 74 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDEDG-G--EVVATARFENPVST--PQPGWAEQDPDELWQAILEALRQLLE---ESKIDPDA 74 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCCC-C--eEEEEeeccccccC--CCCCCcccCHHHHHHHHHHHHHHHHH---hcccChhh
Confidence 35799999999999999998652 3 34433332211111 1112 2233 334445555555444 44466567
Q ss_pred EEEEEehhh
Q 008237 89 TRAVATAAV 97 (573)
Q Consensus 89 i~~vATsA~ 97 (573)
|.+|+-++.
T Consensus 75 I~aI~is~~ 83 (502)
T COG1070 75 IAAIGISGQ 83 (502)
T ss_pred ceEEEEecc
Confidence 888875544
No 116
>PRK13411 molecular chaperone DnaK; Provisional
Probab=76.65 E-value=21 Score=41.18 Aligned_cols=94 Identities=20% Similarity=0.278 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCCcccEEEEEe-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhc
Q 008237 60 ISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQ 136 (573)
Q Consensus 60 ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~i~~~tG~~i-~VIsg~eEA~l~~~gv~~ 136 (573)
++++.+- ...|+..++.++.+ |.+.. .+|-| -|.=. ......+...-+..|+++ ++|+...=|-+.| |...
T Consensus 108 ~~peei~--a~iL~~lk~~ae~~lg~~v~--~~VITVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y-~~~~ 181 (653)
T PRK13411 108 YTPQEIS--AMILQKLKQDAEAYLGEPVT--QAVITVPAYFT-DAQRQATKDAGTIAGLEVLRIINEPTAAALAY-GLDK 181 (653)
T ss_pred ECHHHHH--HHHHHHHHHHHHHHhCCCcc--eEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-cccc
Confidence 4554443 33477777766654 43322 23333 22111 223334444556679995 6888888777766 3322
Q ss_pred cCCCCCCceEEEEeCCCceEEEEee
Q 008237 137 FLPVFDRLVLSVDIGGGSTEFVIGK 161 (573)
Q Consensus 137 ~~~~~~~~~lviDIGGGStEl~~~~ 161 (573)
. ..+...+|+|+|||++.+++.+
T Consensus 182 ~--~~~~~vlV~DlGgGT~dvsi~~ 204 (653)
T PRK13411 182 Q--DQEQLILVFDLGGGTFDVSILQ 204 (653)
T ss_pred c--CCCCEEEEEEcCCCeEEEEEEE
Confidence 1 1245689999999999998765
No 117
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=74.74 E-value=7.7 Score=40.48 Aligned_cols=62 Identities=29% Similarity=0.386 Sum_probs=37.6
Q ss_pred EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeE--EEE-EEEehhHHHHHHhhc
Q 008237 118 VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKV--VFC-ESVNLGHVSLSEKFG 183 (573)
Q Consensus 118 i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~--~~~-~SlplG~vrl~e~f~ 183 (573)
|+|++..-=|.+.++.- +. ..+..+|+||||+.|.+..+.++.. ... .+.++|...+++...
T Consensus 143 V~V~PQ~~~A~~~~~~~---~~-~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~ 207 (318)
T PF06406_consen 143 VEVFPQSVGAVFDALMD---LD-EDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIA 207 (318)
T ss_dssp EEEEESSHHHHHHHHHT---S--TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHH
T ss_pred EEEEcccHHHHHHHHHh---hc-ccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHH
Confidence 44555444455555433 22 1245899999999999999886532 222 245789999888653
No 118
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=74.73 E-value=8.4 Score=42.72 Aligned_cols=76 Identities=13% Similarity=0.205 Sum_probs=44.1
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCcccEE
Q 008237 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTR 90 (573)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (573)
++..||+||.++|..+++. +|+ ++...+.+.+. .....| ...++. .+.++++++. ++++.++++.+|.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~--~g~--~l~~~~~~~~~--~~~~~g~~e~d~~~~~~~i~~~i~~---~~~~~~~~~~~i~ 72 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDK--DGN--IVAIHQKEFTQ--IFPKPGWVEHDPMEIWESVLSCIAE---ALAKAGIKPDDIA 72 (493)
T ss_pred eEEEEecCCCceEEEEECC--CCC--EEEEEeeeccc--cCCCCCcEeeCHHHHHHHHHHHHHH---HHHHcCCChhhee
Confidence 5778999999999999973 453 44444444332 112223 233444 3333344444 4456677656788
Q ss_pred EEEehhhh
Q 008237 91 AVATAAVR 98 (573)
Q Consensus 91 ~vATsA~R 98 (573)
+|+-++.+
T Consensus 73 aIgis~~~ 80 (493)
T TIGR01311 73 AIGITNQR 80 (493)
T ss_pred EEEEecCc
Confidence 88766653
No 119
>PRK04123 ribulokinase; Provisional
Probab=74.34 E-value=15 Score=41.45 Aligned_cols=82 Identities=9% Similarity=0.035 Sum_probs=47.4
Q ss_pred CeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeecc----CCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCC
Q 008237 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR----DLSSSC--SISTQS-QARSVESLLMFRDIIQSHNIS 85 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~----~~~~~g--~ls~e~-i~r~~~~L~~f~~~~~~~~v~ 85 (573)
+++.+||+||.|+|..+++.. +|+. +........... .....| ...++. .+.+++++++- +++.+++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d~~-~g~~--~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~---~~~~~~~ 76 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVDCA-TGEE--LATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAV---LKEAGVD 76 (548)
T ss_pred cEEEEEecCCCceEEEEEECC-CCcE--eEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHH---HHHcCCC
Confidence 368899999999999999742 4543 322222222110 111223 233444 55566666553 3445665
Q ss_pred cccEEEEEehhhhhc
Q 008237 86 RDHTRAVATAAVRAA 100 (573)
Q Consensus 86 ~~~i~~vATsA~R~A 100 (573)
..+|.+++-++.+..
T Consensus 77 ~~~I~aIgis~~~~~ 91 (548)
T PRK04123 77 PAAVVGIGVDFTGST 91 (548)
T ss_pred hhhEEEEEEecccce
Confidence 567999998876543
No 120
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=73.47 E-value=13 Score=41.69 Aligned_cols=79 Identities=10% Similarity=0.008 Sum_probs=43.4
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeec------c--CCC-cCC--CCCHHHH-HHHHHHHHHHHHHHHH
Q 008237 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILG------R--DLS-SSC--SISTQSQ-ARSVESLLMFRDIIQS 81 (573)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg------~--~~~-~~g--~ls~e~i-~r~~~~L~~f~~~~~~ 81 (573)
++.+||+||.|+|..|++.. +|+. +.....++.+- . +.. ..| ...++.+ +.+++ -+++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~-~G~~--~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~---~~~~~~~~ 75 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVA-TGEE--IATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEA---AIPTVLAE 75 (536)
T ss_pred eEEEEecCCCceEEEEEECC-CCcE--eeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHH---HHHHHHHH
Confidence 46899999999999999832 3543 32233332210 0 000 012 3344443 22333 34555566
Q ss_pred cCCCcccEEEEEehhhh
Q 008237 82 HNISRDHTRAVATAAVR 98 (573)
Q Consensus 82 ~~v~~~~i~~vATsA~R 98 (573)
.+++..+|.+|+.++.+
T Consensus 76 ~~~~~~~I~aI~~s~q~ 92 (536)
T TIGR01234 76 LGVDPADVVGIGVDFTA 92 (536)
T ss_pred cCCCHHHEEEEEEecCc
Confidence 67765679999877653
No 121
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=73.39 E-value=14 Score=41.08 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=43.9
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHHH-HHHHHHHHHHHHHHHHcCCCcc--c
Q 008237 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQSQ-ARSVESLLMFRDIIQSHNISRD--H 88 (573)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~i-~r~~~~L~~f~~~~~~~~v~~~--~ 88 (573)
++..||+||.|+|..+++. +|+. +...+.+..+- ....| ...++.+ +.+++++++..+ +.+.... +
T Consensus 3 ~~lgiDiGTts~Ka~l~d~--~G~~--v~~~~~~~~~~--~~~~g~~eqd~~~~~~~~~~~l~~~~~---~~~~~~~~~~ 73 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE--KGNV--VSSHQIPHEQI--TPHPGWLEHDPEEILRNVYKCMNEAIK---KLREKGPSFK 73 (504)
T ss_pred EEEEEecCCCceEEEEECC--CCCE--EEEEEEeeccc--CCCCCeEeeCHHHHHHHHHHHHHHHHH---HcCCCCccCc
Confidence 6889999999999999974 4543 44344333221 11112 2344443 344555555433 3344333 6
Q ss_pred EEEEEehhhhh
Q 008237 89 TRAVATAAVRA 99 (573)
Q Consensus 89 i~~vATsA~R~ 99 (573)
|.+|+.++.+.
T Consensus 74 I~aIgis~q~~ 84 (504)
T PTZ00294 74 IKAIGITNQRE 84 (504)
T ss_pred eEEEEeecCcc
Confidence 88898777644
No 122
>PRK10331 L-fuculokinase; Provisional
Probab=72.60 E-value=21 Score=39.24 Aligned_cols=78 Identities=13% Similarity=0.202 Sum_probs=43.3
Q ss_pred CeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHHH-HHHHHHHHHHHHHHHHcCCCcccE
Q 008237 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQSQ-ARSVESLLMFRDIIQSHNISRDHT 89 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~i-~r~~~~L~~f~~~~~~~~v~~~~i 89 (573)
+++.+||+||.|+|..+++. +|+. +...+.+...-......| ...++.+ +.+++++++.. ++. ...+|
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~--~G~~--~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~---~~~--~~~~I 72 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDR--QGKI--VARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQIN---SEL--TECHI 72 (470)
T ss_pred ceEEEEecCCCceEEEEEcC--CCcE--EEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHH---HhC--Cccce
Confidence 46789999999999999974 4644 444444322211111112 3344443 34444555443 322 22358
Q ss_pred EEEEehhhhh
Q 008237 90 RAVATAAVRA 99 (573)
Q Consensus 90 ~~vATsA~R~ 99 (573)
.+++-++.+.
T Consensus 73 ~~I~is~~~~ 82 (470)
T PRK10331 73 RGITVTTFGV 82 (470)
T ss_pred EEEEEecccc
Confidence 8888777654
No 123
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=71.82 E-value=4.8 Score=43.89 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHHHHHH-hcccccchhhhhhcccCcchHHHHHHHHHHhhcccc----------------cCCCCchhh
Q 008237 361 KAGAQCASIAKDIFEGLR-KCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF----------------TSKKGYHKQ 423 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~-~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~----------------i~~~~~~kh 423 (573)
.|+.-|+.+|..|...+. .... +.. .+ .....|+++||++||||.- .....|.-|
T Consensus 61 tHslev~~i~r~~~~~~~~~~~~-~~~------~~-~~~~~l~~a~~L~HDiGhpPfgH~gE~~L~~~~~~~ggFEgNaQ 132 (432)
T PRK05318 61 THSLEVAQIGTGIVAQLKKEKQP-ELK------PL-LPSDSLIESLCLAHDIGHPPFGHGGEVALNYMMRDHGGFEGNGQ 132 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc-ccc------cc-cccHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhcCCCchHHH
Confidence 799999999999988873 2211 000 00 0134689999999999953 123467777
Q ss_pred hHHHHHcCCC---CCCCCHHHHHHHHHHHHHh
Q 008237 424 SCHIIMNGDH---LYGYSTDEIKLIALLTRFH 452 (573)
Q Consensus 424 s~yiI~ns~~---l~G~s~~E~~~iA~ia~~h 452 (573)
|+-||..-+. -.|++- -...++.++.|-
T Consensus 133 slRIlt~Le~~~~~~GLNL-T~~tL~gilKYp 163 (432)
T PRK05318 133 TFRILTKLEPYTEHFGMNL-TRRTLLGILKYP 163 (432)
T ss_pred HHHHHHHHhccCCCCCccc-cHHHHHHHHcCC
Confidence 8888765430 246654 345566667763
No 124
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=71.66 E-value=93 Score=32.57 Aligned_cols=139 Identities=19% Similarity=0.191 Sum_probs=75.1
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEEehh
Q 008237 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAA 96 (573)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA 96 (573)
.+|||.=.+ .++.++++|....+.. .+..|=++. +++-++|+.+.+ .++.. ...-++=|.=
T Consensus 2 G~DiGGA~~--K~a~~~~~g~~~~v~~--~~~plW~~~-----------~~L~~~l~~~~~---~~~~~-~~~avtMTgE 62 (318)
T TIGR03123 2 GIDIGGANT--KAAELDEDGRIKEVHQ--LYCPLWKGN-----------DKLAETLKEISQ---DLSSA-DNVAVTMTGE 62 (318)
T ss_pred cccccccee--eeEEecCCCceeEEEE--ecCcccCCc-----------hHHHHHHHHHHH---hcCcc-ceEEEEeehh
Confidence 479996544 4455555565544432 444454442 222234444333 33332 2444555665
Q ss_pred hhhc-----CChHHHHHHHHHHcCCcEEEeCh------HHHHH-H----HHhhhh---ccCCCCCCceEEEEeCCCceEE
Q 008237 97 VRAA-----ENKDEFVECVREKVGFEVDVLTG------EQEAK-F----VYMGVL---QFLPVFDRLVLSVDIGGGSTEF 157 (573)
Q Consensus 97 ~R~A-----~N~~~fl~~i~~~tG~~i~VIsg------~eEA~-l----~~~gv~---~~~~~~~~~~lviDIGGGStEl 157 (573)
+-++ .=-..+++.+.+.++-++.+..+ -++|. . ..-|.. ..+.-..++.+++||||=||.+
T Consensus 63 LaD~f~~r~~GV~~i~~~~~~~~~~~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTTtDi 142 (318)
T TIGR03123 63 LADCFEDKAEGVEFILAAVESAFGSPVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLFVDMGSTTTDI 142 (318)
T ss_pred hhhhhcCHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEEEEcCccceee
Confidence 5443 12234567777777767766422 23332 2 111211 1111113459999999999999
Q ss_pred EEeeCCeEEEEEEEehh
Q 008237 158 VIGKRGKVVFCESVNLG 174 (573)
Q Consensus 158 ~~~~~~~~~~~~SlplG 174 (573)
+.+.+|++.......++
T Consensus 143 ~~i~~G~p~~~~~~d~~ 159 (318)
T TIGR03123 143 IPIIDGEVAAKGKTDLE 159 (318)
T ss_pred EEecCCEeeeeechhhh
Confidence 99999998876555555
No 125
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown]
Probab=70.49 E-value=5.7 Score=42.52 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCCchhhhHHHH----HcCCCCCC
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQSCHII----MNGDHLYG 436 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~~~~~khs~yiI----~ns~~l~G 436 (573)
.|+.=|..+|-.+-+.|..--+.-. .+++.+..-.+.|++|||||. +-.-|-|..- ..++ +-
T Consensus 76 eHsLG~~~lA~~~v~~L~~~q~~El-------~It~~d~~~vqvA~LLHDIGH-----GPfSHmFe~~f~~~v~s~--~e 141 (498)
T KOG2681|consen 76 EHSLGTYTLAGILVNALNKNQCPEL-------CITEVDLQAVQVAALLHDIGH-----GPFSHLFEGEFTPMVRSG--PE 141 (498)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCC-------CCCHHHHHHHHHHHHHhhcCC-----CchhhhhhheecccccCC--cc
Confidence 5777777888888777775432110 357777888999999999994 2222333221 2332 56
Q ss_pred CCHHHHHH
Q 008237 437 YSTDEIKL 444 (573)
Q Consensus 437 ~s~~E~~~ 444 (573)
|+|++-.+
T Consensus 142 ~~HE~~si 149 (498)
T KOG2681|consen 142 FYHEDMSI 149 (498)
T ss_pred cchhhhHH
Confidence 88877643
No 126
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=70.41 E-value=4.7 Score=44.02 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhccc
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~ 413 (573)
.|+.-|+.+|..|...+... |..+..+. .........++++||++||||.
T Consensus 64 tHsleV~~i~r~i~~~l~~~--l~~~~~~~-~~~~~~~~~lv~aa~L~HDiGh 113 (440)
T PRK01096 64 THSLEVSCVGRSLGMRVGET--LKEEKLPD-WISPADIGAIVQSACLAHDIGN 113 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHH--Hhhhcccc-ccccchHHHHHHHHHHHhcCCC
Confidence 78888888888887666532 11100000 0001123469999999999995
No 127
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=68.97 E-value=23 Score=39.77 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=42.1
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHH-HHHHHHHHHHHHHHHHcCCCcccEEEEE
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQ-ARSVESLLMFRDIIQSHNISRDHTRAVA 93 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i-~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (573)
+..||+||.|+|..+++. +|+ ++.....++.+-..-..-....++.+ +..+++++ ++++..+++..+|.+++
T Consensus 2 ~lgID~GTts~Ka~l~d~--~G~--i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~---~~~~~~~~~~~~I~~Ig 74 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS--TGD--ILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVK---QVLAESKVDPNSVKGIG 74 (541)
T ss_pred EEEEEecCcCEEEEEEcC--CCC--EEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHH---HHHHHcCCChhheEEEE
Confidence 568999999999999974 454 34433333322111000112344443 33344444 45556676655788888
Q ss_pred ehh
Q 008237 94 TAA 96 (573)
Q Consensus 94 TsA 96 (573)
-++
T Consensus 75 is~ 77 (541)
T TIGR01315 75 FDA 77 (541)
T ss_pred ecc
Confidence 665
No 128
>PRK09698 D-allose kinase; Provisional
Probab=68.10 E-value=1.5e+02 Score=30.32 Aligned_cols=136 Identities=15% Similarity=0.135 Sum_probs=78.5
Q ss_pred CeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Q 008237 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (573)
..+..||||...+++.+++.+ |. ++.+.+.++. ...+++.++...+.+++|.+-.. ..+ .-..|
T Consensus 4 ~~~lgidig~t~i~~~l~d~~--g~--i~~~~~~~~~--------~~~~~~~~~~l~~~i~~~~~~~~-~~i---~gigi 67 (302)
T PRK09698 4 NVVLGIDMGGTHIRFCLVDAE--GE--ILHCEKKRTA--------EVIAPDLVSGLGEMIDEYLRRFN-ARC---HGIVM 67 (302)
T ss_pred cEEEEEEcCCcEEEEEEEcCC--CC--EEEEEEeCCc--------cccchHHHHHHHHHHHHHHHHcC-CCe---eEEEE
Confidence 467889999999999999764 43 3444433321 11244557777777777765321 111 12344
Q ss_pred Eehhh--------hhcCC-------hHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEE
Q 008237 93 ATAAV--------RAAEN-------KDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEF 157 (573)
Q Consensus 93 ATsA~--------R~A~N-------~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl 157 (573)
|+... ....| .-.+.+.+++++|++|.+.+.-.=+-+.-.- .......+.+.+.+|.| +--
T Consensus 68 a~pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~~pv~v~NDa~aaa~~E~~---~~~~~~~~~~~v~lgtG-IG~ 143 (302)
T PRK09698 68 GFPALVSKDRRTVISTPNLPLTALDLYDLADKLENTLNCPVFFSRDVNLQLLWDVK---ENNLTQQLVLGAYLGTG-MGF 143 (302)
T ss_pred eCCcceeCCCCEEEecCCCCccccccCCHHHHHHHHhCCCEEEcchHhHHHHHHHH---hcCCCCceEEEEEecCc-eEE
Confidence 44432 11222 2346788889999999998875544332211 11112235788888866 444
Q ss_pred EEeeCCeEEEE
Q 008237 158 VIGKRGKVVFC 168 (573)
Q Consensus 158 ~~~~~~~~~~~ 168 (573)
.+.-+|++...
T Consensus 144 giv~~G~~~~G 154 (302)
T PRK09698 144 AVWMNGAPWTG 154 (302)
T ss_pred EEEECCEEeeC
Confidence 55667776643
No 129
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=67.43 E-value=47 Score=35.55 Aligned_cols=95 Identities=19% Similarity=0.312 Sum_probs=60.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHc-CCCcccEEEEEehhhhhcCChHHHHHHHHHHc-------CCc-EEEeChHHH
Q 008237 56 SSCSISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKV-------GFE-VDVLTGEQE 126 (573)
Q Consensus 56 ~~g~ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~t-------G~~-i~VIsg~eE 126 (573)
++..++||-|.. -+|..+++.+++| |-+. -.||-|- ..+|-+.-++.| |++ ++||+...-
T Consensus 143 ~~K~FtPeEiSa--MiL~KMKe~AEayLGkkv--~~AVvTv-------PAYFNDAQrQATKDAGtIAgLnV~RIiNePTa 211 (663)
T KOG0100|consen 143 ETKVFTPEEISA--MILTKMKETAEAYLGKKV--THAVVTV-------PAYFNDAQRQATKDAGTIAGLNVVRIINEPTA 211 (663)
T ss_pred cccccCHHHHHH--HHHHHHHHHHHHHhCCcc--cceEEec-------chhcchHHHhhhcccceeccceEEEeecCccH
Confidence 456788988874 4688999999998 3221 2344442 124444444444 777 577877766
Q ss_pred HHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe--eCCe
Q 008237 127 AKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG--KRGK 164 (573)
Q Consensus 127 A~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~--~~~~ 164 (573)
|.+.| |.-. ...+.+.+|+|+|||...+++. ++|-
T Consensus 212 AAIAY-GLDK--k~gEknilVfDLGGGTFDVSlLtIdnGV 248 (663)
T KOG0100|consen 212 AAIAY-GLDK--KDGEKNILVFDLGGGTFDVSLLTIDNGV 248 (663)
T ss_pred HHHHh-cccc--cCCcceEEEEEcCCceEEEEEEEEcCce
Confidence 65554 4321 1245679999999999998764 4554
No 130
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=66.94 E-value=9 Score=36.66 Aligned_cols=38 Identities=24% Similarity=0.132 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccC
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTS 416 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~ 416 (573)
+|...|+++|.+ |++.+++.. .-...|++|||++....
T Consensus 20 ~H~l~V~~~A~~----LA~~y~~d~--------------~kA~~AgilHD~aK~~p 57 (187)
T COG1713 20 EHCLGVAETAIE----LAEAYGLDP--------------EKAYLAGILHDIAKELP 57 (187)
T ss_pred HHHHHHHHHHHH----HHHHhCCCH--------------HHHHHHHHHHHHHhhCC
Confidence 799999999987 466665321 23888999999987765
No 131
>PLN02295 glycerol kinase
Probab=66.77 E-value=19 Score=40.25 Aligned_cols=76 Identities=11% Similarity=0.163 Sum_probs=42.8
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHHHH-HHHHHHHHHHHHHHHcCCCccc---
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQSQA-RSVESLLMFRDIIQSHNISRDH--- 88 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~i~-r~~~~L~~f~~~~~~~~v~~~~--- 88 (573)
+.+||+||.|+|..+++. +|+. +.....+..+- ....| +..++.+. .++++++ +++++.++++.+
T Consensus 2 vlgID~GTts~Ka~l~d~--~G~~--~~~~~~~~~~~--~~~~G~~Eqdp~~~w~~~~~~i~---~~~~~~~~~~~~i~~ 72 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDR--DARP--VASHQVEFTQI--YPQAGWVEHDPMEILESVLTCIA---KALEKAAAKGHNVDS 72 (512)
T ss_pred EEEEecCCCceEEEEECC--CCCE--EEEEeeccccc--CCCCCcEeeCHHHHHHHHHHHHH---HHHHHcCCCcccccc
Confidence 568999999999999974 4654 33333333221 11122 33555544 3344444 444555665544
Q ss_pred -EEEEEehhhhh
Q 008237 89 -TRAVATAAVRA 99 (573)
Q Consensus 89 -i~~vATsA~R~ 99 (573)
|.+|+-++.+.
T Consensus 73 ~i~aIg~s~q~~ 84 (512)
T PLN02295 73 GLKAIGITNQRE 84 (512)
T ss_pred ceEEEEEecCcc
Confidence 68888666543
No 132
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=66.71 E-value=2.8 Score=38.89 Aligned_cols=20 Identities=50% Similarity=0.700 Sum_probs=17.1
Q ss_pred HHHHHHHHhhcccccCCCCc
Q 008237 401 YLEAACLLHNIGHFTSKKGY 420 (573)
Q Consensus 401 lL~~Aa~LhdiG~~i~~~~~ 420 (573)
=|-+||+|||||..++.++|
T Consensus 50 ~lVaaALLHDiGhl~~~~g~ 69 (186)
T COG4341 50 ALVAAALLHDIGHLYADYGH 69 (186)
T ss_pred HHHHHHHHHhHHHHhhhcCC
Confidence 37899999999999988774
No 133
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=66.57 E-value=50 Score=34.12 Aligned_cols=136 Identities=21% Similarity=0.213 Sum_probs=73.7
Q ss_pred CCeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCc---CCCCC-HHHHHHHHHHHHHHHHHHHHcCCCcc
Q 008237 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSS---SCSIS-TQSQARSVESLLMFRDIIQSHNISRD 87 (573)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~---~g~ls-~e~i~r~~~~L~~f~~~~~~~~v~~~ 87 (573)
.+++-.||-|+.++|.+|++. +++ + ||++... ..... ++++..+.+++..+.. +-|.+++
T Consensus 4 ~~~~lGVDGGGTkt~a~l~~~--~g~--v---------lg~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~---~aG~~~~ 67 (301)
T COG2971 4 MPYFLGVDGGGTKTRAVLADE--DGN--V---------LGRGKSGPANIQLVGKEEAVRNIKDAIREALD---EAGLKPD 67 (301)
T ss_pred ccEEEEEccCCcceEEEEEcC--CCc--E---------EEEeccCCceecccchHHHHHHHHHHHHHHHH---hcCCCHH
Confidence 357889999999999999973 343 2 3333221 13334 6777777777766553 2344332
Q ss_pred c--EEEEEehhhhhcCChHHHHHHHHHHc--CCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCC
Q 008237 88 H--TRAVATAAVRAAENKDEFVECVREKV--GFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRG 163 (573)
Q Consensus 88 ~--i~~vATsA~R~A~N~~~fl~~i~~~t--G~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~ 163 (573)
+ ..+++.+..-. |.+.-......-. ..++.|-+. ++..++|... ++.++|+=.|.||.-+.. +++
T Consensus 68 ~i~~~~agla~ag~--~~~~~~~~~~~~l~~a~~v~v~~D---g~iAl~ga~~-----~~~Gii~i~GTGSi~~~~-~gg 136 (301)
T COG2971 68 EIAAIVAGLALAGA--NVEEAREELERLLPFAGKVDVEND---GLIALRGALG-----DDDGIIVIAGTGSIGYGR-KGG 136 (301)
T ss_pred HhCceeeeeeccCc--chhHHHHHHHHhcCccceEEEecC---hHHHHhhccC-----CCCCEEEEecCCeEEEEE-eCC
Confidence 2 22333332211 2222222222212 224556554 4444544331 345899999999999987 666
Q ss_pred eEEE--EEEEehh
Q 008237 164 KVVF--CESVNLG 174 (573)
Q Consensus 164 ~~~~--~~SlplG 174 (573)
+... .+.+++|
T Consensus 137 ~~~r~GG~Gf~Ig 149 (301)
T COG2971 137 RRERVGGWGFPIG 149 (301)
T ss_pred eeEEecCcCcccc
Confidence 5432 2444444
No 134
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=65.94 E-value=7.2 Score=38.48 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHhhccccc
Q 008237 398 DLEYLEAACLLHNIGHFT 415 (573)
Q Consensus 398 ~r~lL~~Aa~LhdiG~~i 415 (573)
++.++-+||+|||+|+-+
T Consensus 104 w~~~~~~aaLlHDlgK~~ 121 (218)
T TIGR03760 104 WNAAVFYAALLHDLGKLA 121 (218)
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 456899999999999983
No 135
>PRK13317 pantothenate kinase; Provisional
Probab=65.75 E-value=1.3e+02 Score=30.74 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=40.1
Q ss_pred cCCcEEEeChHHHHHHHHhhhhccC---CCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHH
Q 008237 114 VGFEVDVLTGEQEAKFVYMGVLQFL---PVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSE 180 (573)
Q Consensus 114 tG~~i~VIsg~eEA~l~~~gv~~~~---~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e 180 (573)
.|+++.= .+|-.-...|+...+ ..+..+.++++||+|-. ++.+++++....-.-.+|--.+-.
T Consensus 67 ~~~~~~~---v~E~~a~~~g~~~l~~~~~~~~~~~~i~~iG~g~s-i~~~~g~~~~r~~Gt~iGGgt~~g 132 (277)
T PRK13317 67 YGYPIAE---FVEFEATGLGVRYLLKEEGHDLNDYIFTNIGTGTS-IHYVDGNSQRRVGGTGIGGGTIQG 132 (277)
T ss_pred cCCCeee---eHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCceE-EEEEeCCceEEEccccccHHHHHH
Confidence 5655422 456555666665544 11234578888888855 888888877777777777754443
No 136
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=65.23 E-value=8.4 Score=42.71 Aligned_cols=15 Identities=47% Similarity=0.935 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhccc
Q 008237 399 LEYLEAACLLHNIGH 413 (573)
Q Consensus 399 r~lL~~Aa~LhdiG~ 413 (573)
..++++||++||||.
T Consensus 107 ~~lveaa~L~HDiGh 121 (503)
T PRK04926 107 ESIVEMACLMHDIGN 121 (503)
T ss_pred HHHHHHHHHHhcCCC
Confidence 479999999999994
No 137
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=64.84 E-value=8.2 Score=39.75 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=19.7
Q ss_pred CCceEEEEeCCCceEEEEeeCCeEEEEEEEeh
Q 008237 142 DRLVLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (573)
Q Consensus 142 ~~~~lviDIGGGStEl~~~~~~~~~~~~Slpl 173 (573)
.++.+++||||-||.++...+|++..+..-.+
T Consensus 76 ~~~~i~vDmGGTTtDi~~i~~G~p~~~~~~~~ 107 (290)
T PF01968_consen 76 LENAIVVDMGGTTTDIALIKDGRPEISSEGAI 107 (290)
T ss_dssp -SSEEEEEE-SS-EEEEEEETTEE--------
T ss_pred CCCEEEEeCCCCEEEEEEEECCeeeccccccc
Confidence 35699999999999999999999875544443
No 138
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=63.19 E-value=1.2e+02 Score=27.63 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=61.8
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEE
Q 008237 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (573)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (573)
+++.|+|=+|..++.+...+ +|.+.+.+-....+-|..+-. .+.+. +--..|++++++|+|+ +|.+-
T Consensus 2 ~vCGVELkgneaii~ll~~~-~~~~~~pdcr~~k~~l~~~~~------~~~vr---~Fq~~f~kl~~dy~Vd--~VvIk- 68 (138)
T PF11215_consen 2 KVCGVELKGNEAIICLLSLD-DGLFQLPDCRVRKFSLSDDNS------TEEVR---KFQFTFAKLMEDYKVD--KVVIK- 68 (138)
T ss_pred eEEEEEEecCeEEEEEEecC-CCceECCccceeEEEcCCCcc------HHHHH---HHHHHHHHHHHHcCCC--EEEEE-
Confidence 47899999999999999976 677877776666666765532 34433 3344688899999996 44211
Q ss_pred ehhh--hhcCChH-HHHHHHHHHc-CCcEEEeChHH
Q 008237 94 TAAV--RAAENKD-EFVECVREKV-GFEVDVLTGEQ 125 (573)
Q Consensus 94 TsA~--R~A~N~~-~fl~~i~~~t-G~~i~VIsg~e 125 (573)
--+- .-|-.+- .-++.+-+-. +++|+++|+.+
T Consensus 69 ~R~~KGKfAGga~~FKmEaaIQL~~~~~V~lvs~~~ 104 (138)
T PF11215_consen 69 ERATKGKFAGGAVGFKMEAAIQLIDDVEVELVSPAT 104 (138)
T ss_pred ecccCCCccCCchhHHHHHHHHhcCCCcEEEECHHH
Confidence 0000 0011111 2244443333 89999999865
No 139
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=61.99 E-value=8.4 Score=41.93 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccc---------c-------CCCCchhhh
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF---------T-------SKKGYHKQS 424 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~---------i-------~~~~~~khs 424 (573)
.|+--|+.+|..|...+. + + ..|+++||++||||.- + ....|.-+|
T Consensus 73 tHslev~~~~r~~~~~~~----~-----------~---~~~~~~~~l~hd~GhpPfgH~gE~~l~~~~~~~ggFEGNAQs 134 (428)
T PRK03007 73 THSLEVAQIGRGIAAGLG----C-----------D---PDLVDLAGLAHDIGHPPYGHNGERALDEVAADCGGFEGNAQT 134 (428)
T ss_pred HHHHHHHHHHHHHHHHhC----C-----------C---HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCchHHHH
Confidence 799999999999876652 1 1 3689999999999952 1 134667778
Q ss_pred HHHHHcCCC--------CCCCCHHHHHHHHHHHHHh
Q 008237 425 CHIIMNGDH--------LYGYSTDEIKLIALLTRFH 452 (573)
Q Consensus 425 ~yiI~ns~~--------l~G~s~~E~~~iA~ia~~h 452 (573)
+-|+..-+. -.|++- -...++.++.|-
T Consensus 135 lRIlt~LE~~~~~~~~~~~GLNL-T~atL~gilKYp 169 (428)
T PRK03007 135 LRILTRLEPKVLDPDGRSAGLNL-TRASLDAACKYP 169 (428)
T ss_pred HHHHHHhccccccccccccCccc-CHHHHhheecCC
Confidence 888865541 115544 234555566663
No 140
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=61.53 E-value=1.1e+02 Score=30.52 Aligned_cols=133 Identities=14% Similarity=0.031 Sum_probs=72.6
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEEe
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (573)
+..||||.+++|+.+++.. + +++.+.+.++. . .-.++-++.+.+.++.+.... +.. .-..||+
T Consensus 2 ~lgidiggt~i~~~l~d~~--g--~i~~~~~~~~~--~------~~~~~~~~~i~~~i~~~~~~~---~~~--~gIgv~~ 64 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDEN--L--QRIWHKRVPTP--R------EDYPQLLQILRDLTEEADTYC---GVQ--GSVGIGI 64 (256)
T ss_pred EEEEEECCCcEEEEEECCC--C--CEEEEEEecCC--C------cCHHHHHHHHHHHHHHHHhhc---CCC--ceEEEEe
Confidence 6799999999999999764 3 34555444421 0 113455565555566554321 110 1133333
Q ss_pred hhh--------hhc----CChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeC
Q 008237 95 AAV--------RAA----ENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKR 162 (573)
Q Consensus 95 sA~--------R~A----~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~ 162 (573)
..+ +.+ -+.-.+.+.+++++|++|.+-+.-.=+-+.-.-.-..- ..++.+.+-+|.| +-..++-+
T Consensus 65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~~pV~leNDanaaAlaE~~~g~~~--~~~~~v~i~lgtG-iG~giv~~ 141 (256)
T PRK13311 65 PGLPNADDGTVFTANVPSAMGQPLQADLSRLIQREVRIDNDANCFALSEAWDPEFR--TYPTVLGLILGTG-VGGGLIVN 141 (256)
T ss_pred cCcEECCCCEEEccCCCcccCCChHHHHHHHHCCCEEEEchhhHHHHHHHHhcCCC--CCCcEEEEEECcC-eEEEEEEC
Confidence 221 111 12346788899999999999887766655443111111 1245677777744 23334555
Q ss_pred CeEEE
Q 008237 163 GKVVF 167 (573)
Q Consensus 163 ~~~~~ 167 (573)
|++..
T Consensus 142 G~l~~ 146 (256)
T PRK13311 142 GSIVS 146 (256)
T ss_pred CEEec
Confidence 55543
No 141
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=60.79 E-value=21 Score=39.21 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=41.7
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHH-HHHHHHHHHHHHHHHHHHcCCCcccEEEEE
Q 008237 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQ-SQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (573)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e-~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (573)
.||||++++|..+++. +|+ ++.+...+..... ...| ..+++ -++.+++++++ ++++++.+..+|.+|+
T Consensus 2 gIDiGtt~ik~~l~d~--~g~--i~~~~~~~~~~~~--~~~g~~e~d~~~~~~~l~~~i~~---~~~~~~~~~~~I~gIg 72 (481)
T TIGR01312 2 GIDLGTSGVKALLVDE--QGE--VIASGSAPHTVIS--PHPGWSEQDPEDWWDATEEAIKE---LLEQASEMGQDIKGIG 72 (481)
T ss_pred ceeecCcceEEEEECC--CCC--EEEEEeecccccC--CCCCCeeeCHHHHHHHHHHHHHH---HHHhcCCCcccEEEEE
Confidence 5999999999999974 454 4444444433211 1122 23333 34445555544 4556676656788888
Q ss_pred ehhh
Q 008237 94 TAAV 97 (573)
Q Consensus 94 TsA~ 97 (573)
-++.
T Consensus 73 vs~~ 76 (481)
T TIGR01312 73 ISGQ 76 (481)
T ss_pred EecC
Confidence 7754
No 142
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=60.08 E-value=16 Score=40.03 Aligned_cols=161 Identities=20% Similarity=0.274 Sum_probs=86.1
Q ss_pred CCCeEE-EEEecccceEEEEEEEeCCCC-EEEEEeeeeeeeeccCCCcC------CCCCHHHHHH-HHH-HHHHHHHHHH
Q 008237 11 PQTLFA-SIDMGTSSFKLLIIRAYPNGK-FLTIDTLKQPVILGRDLSSS------CSISTQSQAR-SVE-SLLMFRDIIQ 80 (573)
Q Consensus 11 ~~~~~A-vIDIGSNsirL~I~e~~~~~~-~~~i~~~k~~vrLg~~~~~~------g~ls~e~i~r-~~~-~L~~f~~~~~ 80 (573)
.++.|+ ++|+||.++|+..+++. +|. .+.....+-+++.|+.+..- |.=..+++.. +++ .++.|-..|.
T Consensus 161 ~~~~YGvAvDlGTS~i~aqlVDL~-sgevv~t~~T~n~ql~~Ge~m~sr~~~i~~~~D~a~~l~~~vVe~i~~~id~~~~ 239 (614)
T COG3894 161 KNEAYGVAVDLGTSGIRAQLVDLK-SGEVVATVITSNPQLPGGEVMDSRDFAIMMGPDGAEGLQIAVVEAINQLIDKLCE 239 (614)
T ss_pred cceeeeeEEecccceeeeEEEecc-CCcEEEeeeccCCCCCCchhhHHHHHHHHhCcchhhhhHHHHHHHHHHHHhhhch
Confidence 445575 89999999999999997 454 56777888889999887521 2111222222 222 3455777788
Q ss_pred HcCCCcccE---EEEEehhhhhc---CCh-----HHHHHHHHHH-------cCCcE------EEeC---hHHHHHHHHhh
Q 008237 81 SHNISRDHT---RAVATAAVRAA---ENK-----DEFVECVREK-------VGFEV------DVLT---GEQEAKFVYMG 133 (573)
Q Consensus 81 ~~~v~~~~i---~~vATsA~R~A---~N~-----~~fl~~i~~~-------tG~~i------~VIs---g~eEA~l~~~g 133 (573)
+++|....| .+++.+-+--| .|. .+|..+.... .|+++ -++. ++-=| ..+|
T Consensus 240 e~~V~~n~I~~svfqgn~Im~h~faG~~~~~l~~~p~~~~~~r~v~~~a~~iGl~~n~n~el~vlP~Ia~~VGA--DAla 317 (614)
T COG3894 240 EGEVCGNPIQLSVFQGNPIMDHAFAGIDPTELGGSPFVKRVSRVVPASASEIGLEVNRNCELFVLPAIAHEVGA--DALA 317 (614)
T ss_pred hccccccchhheeccCchHHHHHhcCCCHHHhcCCccccccccceecchhhcchhhcCCCEEEecchhccccch--HHHH
Confidence 888654333 22333222111 111 1122222110 01111 1110 10000 1112
Q ss_pred hh--ccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhHH
Q 008237 134 VL--QFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (573)
Q Consensus 134 v~--~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~v 176 (573)
.. ..+-..++-.+++|+|. +.|++++.++++. +.|-|-|..
T Consensus 318 ~il~tg~~~sdevslvtD~GT-NaEivlg~~~ri~-t~SaaaGPA 360 (614)
T COG3894 318 MILSTGIHDSDEVSLVTDYGT-NAEIVLGNRDRIV-TASAAAGPA 360 (614)
T ss_pred HHHhccCccccceEEEEeecc-cceEEeccCCEEE-EecCCCCcc
Confidence 21 12222345689999986 7899999888765 568888874
No 143
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=58.66 E-value=35 Score=37.90 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=39.7
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHHH-HHHHHHHHHHHHHHHHcCCCcccEEE
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQSQ-ARSVESLLMFRDIIQSHNISRDHTRA 91 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~i-~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (573)
+.+|||||.++|..+++. +|++ +...+.+...- ....| ..+++.+ +.++++++ ++++..+.+ .+|.+
T Consensus 2 ~lgiDiGtt~~K~~l~d~--~g~i--~~~~~~~~~~~--~~~~g~~e~d~~~~~~~~~~~i~---~~~~~~~~~-~~I~~ 71 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEE--NGKI--VAKSSIGYPLY--TPASGMAEENPEEIFEAVLVTIR---EVSINLEDE-DEILF 71 (505)
T ss_pred EEEEeccccceEEEEEcC--CCCE--EEEEEeecccc--cCCCCCeeeCHHHHHHHHHHHHH---HHHHhCCCc-CceEE
Confidence 578999999999999974 4543 33333322211 11112 2334433 33334444 444444443 45888
Q ss_pred EEehhhh
Q 008237 92 VATAAVR 98 (573)
Q Consensus 92 vATsA~R 98 (573)
++-++.+
T Consensus 72 Igis~~~ 78 (505)
T TIGR01314 72 VSFSTQM 78 (505)
T ss_pred EEEeccc
Confidence 8765543
No 144
>PRK15027 xylulokinase; Provisional
Probab=57.70 E-value=40 Score=37.30 Aligned_cols=76 Identities=14% Similarity=0.309 Sum_probs=40.3
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHH-HHHHHHHHHHHHHHHcCCCcccEEEEE
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQA-RSVESLLMFRDIIQSHNISRDHTRAVA 93 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~-r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (573)
+-.||+||.|+|..+++. +|++ +...+.+..+...-...-..+++.+- .+++++ ++++++... .+|.+++
T Consensus 2 ~lgID~GTts~Ka~l~d~--~G~v--va~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~---~~l~~~~~~--~~I~aI~ 72 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE--QGEV--VASQTEKLTVSRPHPLWSEQDPEQWWQATDRAM---KALGDQHSL--QDVKALG 72 (484)
T ss_pred EEEEEecccceEEEEEcC--CCCE--EEEEeecccccCCCCCccccCHHHHHHHHHHHH---HHHHHhCCc--cceeEEE
Confidence 568999999999999973 4644 43333333221110111123444332 333333 344444433 4688888
Q ss_pred ehhhhh
Q 008237 94 TAAVRA 99 (573)
Q Consensus 94 TsA~R~ 99 (573)
-++.+.
T Consensus 73 is~q~~ 78 (484)
T PRK15027 73 IAGQMH 78 (484)
T ss_pred EecCCC
Confidence 776553
No 145
>PRK09557 fructokinase; Reviewed
Probab=57.07 E-value=1e+02 Score=31.46 Aligned_cols=133 Identities=17% Similarity=0.154 Sum_probs=70.7
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEEe
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (573)
+-.||||.+.+++.+++.+ |. ++.+.+.++. . .-.++.++.+.+.++++.. .++. ..-..||+
T Consensus 2 ~lgidig~t~~~~~l~d~~--g~--i~~~~~~~~~--~------~~~~~~~~~i~~~i~~~~~---~~~~--~~gIgi~~ 64 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDA--GE--ELFRKRLPTP--R------DDYQQTIEAIATLVDMAEQ---ATGQ--RGTVGVGI 64 (301)
T ss_pred EEEEEECCCcEEEEEECCC--CC--EEEEEEecCC--C------CCHHHHHHHHHHHHHHHHh---hcCC--ceEEEecC
Confidence 5689999999999999753 43 3444333221 0 1123444444444444432 2221 11234444
Q ss_pred hhhhh--------cC----ChHHHHHHHHHHcCCcEEEeChHHHHHHHH--hhhhccCCCCCCceEEEEeCCCceEEEEe
Q 008237 95 AAVRA--------AE----NKDEFVECVREKVGFEVDVLTGEQEAKFVY--MGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (573)
Q Consensus 95 sA~R~--------A~----N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~--~gv~~~~~~~~~~~lviDIGGGStEl~~~ 160 (573)
...=+ +. |.-.+.+.+++++|++|.+.+.-.=+-+.- .|... ..++.+.+.+|.| +-..++
T Consensus 65 pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~~~NDa~aaA~aE~~~g~~~----~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 65 PGSISPYTGLVKNANSTWLNGQPLDKDLSARLNREVRLANDANCLAVSEAVDGAAA----GKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred cccCcCCCCeEEecCCccccCCCHHHHHHHHHCCCEEEccchhHHHHHHHHhcccC----CCCcEEEEEEccc-eEEEEE
Confidence 33221 11 334567788899999999887655443332 12211 1245778888744 333455
Q ss_pred eCCeEEEEE
Q 008237 161 KRGKVVFCE 169 (573)
Q Consensus 161 ~~~~~~~~~ 169 (573)
-+|++....
T Consensus 140 ~~G~l~~G~ 148 (301)
T PRK09557 140 INGRVHIGG 148 (301)
T ss_pred ECCEEEecC
Confidence 677766543
No 146
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=53.96 E-value=1.6e+02 Score=30.09 Aligned_cols=132 Identities=12% Similarity=0.065 Sum_probs=72.6
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEEe
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (573)
+..||||.+.+++.+++.+ |. ++.+.+.++. . .-.++.++.+.+.++++.. +++.. .-..||.
T Consensus 2 ~lgidig~t~i~~~l~d~~--g~--i~~~~~~~~~--~------~~~~~~~~~i~~~i~~~~~---~~~~~--~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEK--LE--LQWEERVPTP--R------DSYDAFLDAVCELVAEADQ---RFGCK--GSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCC--Cc--EEEEEEecCC--C------cCHHHHHHHHHHHHHHHHh---hcCCc--ceEEEeC
Confidence 5789999999999999763 43 4444433321 0 1134455555555665542 22221 1133443
Q ss_pred hhhh-------hcCC-----hHHHHHHHHHHcCCcEEEeChHHHHHHHH--hhhhccCCCCCCceEEEEeCCCceEEEEe
Q 008237 95 AAVR-------AAEN-----KDEFVECVREKVGFEVDVLTGEQEAKFVY--MGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (573)
Q Consensus 95 sA~R-------~A~N-----~~~fl~~i~~~tG~~i~VIsg~eEA~l~~--~gv~~~~~~~~~~~lviDIGGGStEl~~~ 160 (573)
...= .+.| .-.+.+.+++++|++|.+-+.-.=+-+.- .|... ..++.+.+.+|.| +--.++
T Consensus 65 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pV~ieNDa~aaalaE~~~g~~~----~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 65 PGMPETEDGTLYAANVPAASGKPLRADLSARLGRDVRLDNDANCFALSEAWDDEFT----QYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred CCcccCCCCEEeccCcccccCCcHHHHHHHHHCCCeEEeccHhHHHHHHhhhcccc----CCCcEEEEEecCc-eEEEEE
Confidence 2211 1122 23577889999999999887765443332 22211 1245788888764 344455
Q ss_pred eCCeEEEE
Q 008237 161 KRGKVVFC 168 (573)
Q Consensus 161 ~~~~~~~~ 168 (573)
-+|++...
T Consensus 140 ~~G~l~~G 147 (303)
T PRK13310 140 FNGKPISG 147 (303)
T ss_pred ECCEEeeC
Confidence 67776544
No 147
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=52.30 E-value=49 Score=36.77 Aligned_cols=73 Identities=11% Similarity=0.134 Sum_probs=49.7
Q ss_pred CeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeecc---CCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccE
Q 008237 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR---DLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHT 89 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~---~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i 89 (573)
+++-.||+||-|.|-.|++.. +|. .|....++++-.. +.. -.=|.+-++..|.+++.-.+ +-||++.+|
T Consensus 3 ~~~iGvDvGTgSaRA~v~D~~-~G~--~la~a~~p~~~~~~~~~~~--~q~s~d~~~av~~aVr~~v~---~agv~~~~V 74 (544)
T COG1069 3 AYVIGVDVGTGSARAGVFDCQ-TGT--LLARAVRPYPMWQPGSNLA--EQHSRDYWEAVCAAVRDVVA---KAGVDPADV 74 (544)
T ss_pred cEEEEEeecCCceeEEEEEcC-CCc--chhhcccceeccccCcccc--ccCHHHHHHHHHHHHHHHHH---HcCCChhHe
Confidence 457789999999999999986 453 3555555554332 222 12356777777887776554 558988788
Q ss_pred EEEE
Q 008237 90 RAVA 93 (573)
Q Consensus 90 ~~vA 93 (573)
..++
T Consensus 75 ~gIG 78 (544)
T COG1069 75 VGIG 78 (544)
T ss_pred eEEE
Confidence 7776
No 148
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=52.15 E-value=22 Score=38.51 Aligned_cols=78 Identities=12% Similarity=0.093 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHH----HhhhhccCCCCCCce
Q 008237 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLV 145 (573)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~e-EA~l~----~~gv~~~~~~~~~~~ 145 (573)
++++..+.++.+|.. ++.+|....+.+..-.+.+.+.++ .-|+++.+.++-+ |..+. ......... .-
T Consensus 10 ~~~~l~~~l~~~g~~--~vlivt~~~~~~~g~~~~v~~~L~-~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~----~D 82 (414)
T cd08190 10 VTAEVGMDLKNLGAR--RVCLVTDPNLAQLPPVKVVLDSLE-AAGINFEVYDDVRVEPTDESFKDAIAFAKKGQ----FD 82 (414)
T ss_pred HHHHHHHHHHHcCCC--eEEEEECcchhhcchHHHHHHHHH-HcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcC----CC
Confidence 445555566677774 677777666766444566666665 3589999887632 22221 111111111 13
Q ss_pred EEEEeCCCce
Q 008237 146 LSVDIGGGST 155 (573)
Q Consensus 146 lviDIGGGSt 155 (573)
+|+-|||||+
T Consensus 83 ~IIaiGGGSv 92 (414)
T cd08190 83 AFVAVGGGSV 92 (414)
T ss_pred EEEEeCCccH
Confidence 8999999995
No 149
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=49.02 E-value=75 Score=34.08 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-----HHHHHHhhhhccCCCCCCce
Q 008237 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVFDRLV 145 (573)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~e-----EA~l~~~gv~~~~~~~~~~~ 145 (573)
++.+..+.++.+|.. ++.+|....++...-.+.+.+.++ +.|+.+.+.+|.+ |.-........... .-
T Consensus 18 ~~~~l~~~~~~~g~~--~~livt~~~~~~~g~~~~v~~~L~-~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~----~D 90 (383)
T PRK09860 18 SLTDAMNMMADYGFT--RTLIVTDNMLTKLGMAGDVQKALE-ERNIFSVIYDGTQPNPTTENVAAGLKLLKENN----CD 90 (383)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcC----CC
Confidence 455566667778874 566776666666544556666655 4689998988742 21111111122221 13
Q ss_pred EEEEeCCCce
Q 008237 146 LSVDIGGGST 155 (573)
Q Consensus 146 lviDIGGGSt 155 (573)
.|+=|||||+
T Consensus 91 ~IiaiGGGS~ 100 (383)
T PRK09860 91 SVISLGGGSP 100 (383)
T ss_pred EEEEeCCchH
Confidence 8999999995
No 150
>PRK13324 pantothenate kinase; Reviewed
Probab=47.41 E-value=3.2e+02 Score=27.66 Aligned_cols=130 Identities=13% Similarity=0.205 Sum_probs=66.8
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeecc-CCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEE
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR-DLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~-~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (573)
+-+||||=.++++-+++ +++ .+... |+.. +.. ..++| ....+..++..+++....+..+.
T Consensus 2 iL~iDiGNT~ik~gl~~---~~~--~~~~~----r~~t~~~~---~t~de-------~~~~l~~~~~~~~~~~~~i~~vi 62 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD---GDR--IVSQI----RYATSSVD---STSDQ-------MGVFLRQALRENSVDLGKIDGCG 62 (258)
T ss_pred EEEEEeCCCceEEEEEE---CCE--EEEEE----EEecCccc---cchHH-------HHHHHHHHHHhcCCCccCCCeEE
Confidence 45789999999999997 222 23322 2211 111 11111 12233444444454332344444
Q ss_pred ehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHH---------------HHHHhhhhccCCCCCCceEEEEeCCCceEEE
Q 008237 94 TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEA---------------KFVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (573)
Q Consensus 94 TsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA---------------~l~~~gv~~~~~~~~~~~lviDIGGGStEl~ 158 (573)
-|.+. .+=...|.+.+.+.+|.++.+++.+... .....|+....+ ..+.+|+|.|..-|==.
T Consensus 63 isSVv-P~l~~~l~~~~~~~~~~~~~~v~~~~~~l~~~y~~p~~lG~DR~~~~vaA~~~~~--~~~~iViD~GTA~T~d~ 139 (258)
T PRK13324 63 ISSVV-PHLNYSLGSAVIKYFNIKPFFISMDTTDLDMSAVEAHQVGADRIASCISAIADHP--NKDLLIIDLGTATTFDL 139 (258)
T ss_pred EEeCc-chhHHHHHHHHHHHhCCCeEEEecCCccceeecCChhhccHHHHHHHHHHHHhcC--CCCEEEEEcCCceEEEE
Confidence 44444 2223345466677788888777533311 011222222221 34689999999988766
Q ss_pred EeeCCeEE
Q 008237 159 IGKRGKVV 166 (573)
Q Consensus 159 ~~~~~~~~ 166 (573)
+-.+|...
T Consensus 140 v~~~g~~~ 147 (258)
T PRK13324 140 VTKDKKYL 147 (258)
T ss_pred EcCCCeEE
Confidence 65666554
No 151
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=46.69 E-value=1.6e+02 Score=26.63 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=57.4
Q ss_pred eEEEEEecccceEEEEEEEeCCCCE-EEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Q 008237 14 LFASIDMGTSSFKLLIIRAYPNGKF-LTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (573)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~-~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (573)
.+-+||.|+-.+=+.|.+. .+.+ .++..... .+ . . ..+..+.+++++|+++ ..+|
T Consensus 5 ~iLalD~G~kriGvAv~d~--~~~~a~pl~~i~~-----~~----~--~--------~~~~~l~~~i~~~~i~---~iVv 60 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDP--LGGTAQPLETIKR-----NN----G--T--------PDWDRLEKLIKEWQPD---GLVV 60 (138)
T ss_pred cEEEEEeCCCEEEEEEecC--CCCEEcCEEEEEc-----CC----C--c--------hHHHHHHHHHHHhCCC---EEEE
Confidence 4889999998888887753 2322 11211100 00 0 0 2256677788889884 4678
Q ss_pred Ee------hhhhhcCChHHHHHHHHHHcCCcEEEeCh---HHHHHHHH
Q 008237 93 AT------AAVRAAENKDEFVECVREKVGFEVDVLTG---EQEAKFVY 131 (573)
Q Consensus 93 AT------sA~R~A~N~~~fl~~i~~~tG~~i~VIsg---~eEA~l~~ 131 (573)
|- +.-..|.-...|.++++++++++|...+. ..||.-.+
T Consensus 61 GlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~TT~~A~~~l 108 (138)
T PRK00109 61 GLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERLSTVEAERAL 108 (138)
T ss_pred eccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHHHHHHHH
Confidence 81 11223333458999999999999998875 34555444
No 152
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=46.44 E-value=58 Score=34.79 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHH--HHhhhhccCCCCCCceEE
Q 008237 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKF--VYMGVLQFLPVFDRLVLS 147 (573)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eE-A~l--~~~gv~~~~~~~~~~~lv 147 (573)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++-++ ..+ ...++..... .+.-.|
T Consensus 15 ~l~~l~~~l~~~g~~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~d~I 89 (377)
T cd08188 15 ALKLAGRYARRLGAK--KVLLVSDPGVIKAGWVDRVIESLE-EAGLEYVVFSDVSPNPRDEEVMAGAELYLE--NGCDVI 89 (377)
T ss_pred HHHHHHHHHHHcCCC--eEEEEeCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHh--cCCCEE
Confidence 344555556677764 566676666666544566666554 56889988886432 211 1112211111 122389
Q ss_pred EEeCCCce
Q 008237 148 VDIGGGST 155 (573)
Q Consensus 148 iDIGGGSt 155 (573)
+=|||||+
T Consensus 90 IaiGGGsv 97 (377)
T cd08188 90 IAVGGGSP 97 (377)
T ss_pred EEeCCchH
Confidence 99999995
No 153
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=46.12 E-value=12 Score=24.75 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=20.0
Q ss_pred HHHHcCCCcHHHHHhhcCCCccchhhHHH
Q 008237 268 ERLCCGGDGEVERVRRERFFKRRSEFIVA 296 (573)
Q Consensus 268 ~~l~~~~~~~~er~~~~gl~~~Radii~~ 296 (573)
+.+...+.+ |++++||+.+..|+.|+.
T Consensus 3 ~g~~pas~e--eL~~lpGIG~~tA~~I~~ 29 (30)
T PF00633_consen 3 DGLIPASIE--ELMKLPGIGPKTANAILS 29 (30)
T ss_dssp HHHHTSSHH--HHHTSTT-SHHHHHHHHH
T ss_pred CCcCCCCHH--HHHhCCCcCHHHHHHHHh
Confidence 345566777 899999999999887753
No 154
>PRK10854 exopolyphosphatase; Provisional
Probab=45.60 E-value=1.1e+02 Score=34.29 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=40.5
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeee-eeeeccCCCcCCCCCHHHHHHHHHHHH
Q 008237 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQ-PVILGRDLSSSCSISTQSQARSVESLL 73 (573)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~-~vrLg~~~~~~g~ls~e~i~r~~~~L~ 73 (573)
..-+||||+.|+-+.+++ ++.+....+..- .|||-+..+.++..+++.+.++...+.
T Consensus 138 ~~lvvDIGGGStEl~~~~---~~~~~~~~S~~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~ 195 (513)
T PRK10854 138 RKLVIDIGGGSTELVIGE---NFEPILVESRRMGCVSFAQLYFPGGVISKENFQRARLAAA 195 (513)
T ss_pred CeEEEEeCCCeEEEEEec---CCCeeEeEEEecceeeHHhhhCCCCCCCHHHHHHHHHHHH
Confidence 468999999999999985 344544544432 568888777778888777666555543
No 155
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=45.14 E-value=54 Score=35.18 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-H-HHH-HHhhhhccCCCCCCceEE
Q 008237 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-E-AKF-VYMGVLQFLPVFDRLVLS 147 (573)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~e-E-A~l-~~~gv~~~~~~~~~~~lv 147 (573)
++.+..+.++.+| . ++.+|....+.+..-.+.+.+.++ +.|+++.+.+|.+ + -.. ...++..... .+.-.|
T Consensus 10 ~l~~l~~~~~~~g-~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~--~~~D~I 83 (386)
T cd08191 10 QRRQLPRLAARLG-S--RALIVTDERMAGTPVFAELVQALA-AAGVEVEVFDGVLPDLPRSELCDAASAAAR--AGPDVI 83 (386)
T ss_pred HHHHHHHHHHHcC-C--eEEEEECcchhhcchHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh--cCCCEE
Confidence 3445555666677 3 566777666665444445555443 4589999998775 1 111 1122221111 112389
Q ss_pred EEeCCCce
Q 008237 148 VDIGGGST 155 (573)
Q Consensus 148 iDIGGGSt 155 (573)
+=|||||+
T Consensus 84 IaiGGGS~ 91 (386)
T cd08191 84 IGLGGGSC 91 (386)
T ss_pred EEeCCchH
Confidence 99999995
No 156
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=45.14 E-value=1.1e+02 Score=31.99 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=24.1
Q ss_pred ccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH
Q 008237 87 DHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ 125 (573)
Q Consensus 87 ~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~e 125 (573)
..|...|..| +-..|.+.+.+.+|+++++++-.+
T Consensus 284 ~~I~LtGgga-----~~~gl~~~l~~~l~~~v~~~~P~~ 317 (348)
T TIGR01175 284 DGLVLAGGGA-----TLSGLDAAIYQRLGLPTEVANPFA 317 (348)
T ss_pred ceEEEECccc-----cchhHHHHHHHHHCCCeEecChHH
Confidence 3565555443 344688899999999999987543
No 157
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=44.99 E-value=1.4e+02 Score=30.82 Aligned_cols=57 Identities=18% Similarity=0.059 Sum_probs=39.0
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeee-eeeeccCCCcCCCCCHHHHHHHHHHHHH
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQ-PVILGRDLSSSCSISTQSQARSVESLLM 74 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~-~vrLg~~~~~~g~ls~e~i~r~~~~L~~ 74 (573)
..++|||+.|+-+..++ ++.+..-.+..- .+||-+....++..+++.++.+.+.++.
T Consensus 127 ~~v~DiGGGSte~~~~~---~~~~~~~~Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~ 184 (300)
T TIGR03706 127 GLVVDIGGGSTELILGK---DFEPGEGVSLPLGCVRLTEQFFPDGPISKKSLKQARKAARE 184 (300)
T ss_pred cEEEEecCCeEEEEEec---CCCEeEEEEEccceEEhHHhhCCCCCCCHHHHHHHHHHHHH
Confidence 48999999999999874 344332222322 4688888777788888777766666544
No 158
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=43.53 E-value=1e+02 Score=27.36 Aligned_cols=53 Identities=11% Similarity=0.216 Sum_probs=37.3
Q ss_pred HHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHH
Q 008237 75 FRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFV 130 (573)
Q Consensus 75 f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~ 130 (573)
+.+.++.++++...|.++||-.++ ..+.-+-++-++.|++++..+.+|=....
T Consensus 21 i~~~l~~~~~~~~~i~~iasi~~K---~~E~~l~~~A~~l~~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 21 IEQALAEAGLSPRSIAAIASIDIK---ADEPGLLELAEELGIPLRFFSAEELNAVE 73 (121)
T ss_dssp HHHHHHHCT--GGGEEEEEESSSS---S--HHHHHHHHHCTSEEEEE-HHHHHCHH
T ss_pred HHHHHHHcCCChhhccEEEecccc---CCCHHHHHHHHHhCCCeEEECHHHHhcCC
Confidence 445566788988889999998664 44456667778899999999999877555
No 159
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=42.94 E-value=2e+02 Score=30.33 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHcCCcEEEeChHH--------------------HHHHHHhhhh-----ccCCCCCCceEEEEeCCCceEE
Q 008237 103 KDEFVECVREKVGFEVDVLTGEQ--------------------EAKFVYMGVL-----QFLPVFDRLVLSVDIGGGSTEF 157 (573)
Q Consensus 103 ~~~fl~~i~~~tG~~i~VIsg~e--------------------EA~l~~~gv~-----~~~~~~~~~~lviDIGGGStEl 157 (573)
...+++.+ .+-++++-.|.|-- --.-.++++. .+.+..+-+.+++|||.|.|-.
T Consensus 90 lr~~~~~l-~~~~l~~~~iPgVi~LptVP~~RK~N~IDmGTaDKva~a~lai~~~~~~~gi~y~~~nfIlvEiG~~yta~ 168 (343)
T PF07318_consen 90 LRKLVREL-AESNLPAYFIPGVIHLPTVPAWRKINRIDMGTADKVASAALAIYDQAEREGIEYREVNFILVEIGSGYTAA 168 (343)
T ss_pred HHHHHHHH-HhCCCCEEEeCceeccCCCchHhhhcccccCcHhHHHHHHHHHHhhHHhhCCCcccceEEEEEccCCceEE
Confidence 45677777 55678877777762 2233444443 1234445579999999999999
Q ss_pred EEeeCCeEEEEE
Q 008237 158 VIGKRGKVVFCE 169 (573)
Q Consensus 158 ~~~~~~~~~~~~ 169 (573)
+..++|+++...
T Consensus 169 iaV~~GkIVDGi 180 (343)
T PF07318_consen 169 IAVKNGKIVDGI 180 (343)
T ss_pred EEEECCeEEccc
Confidence 999999998653
No 160
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=42.17 E-value=94 Score=33.21 Aligned_cols=78 Identities=12% Similarity=0.189 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHH----HhhhhccCCCCCCce
Q 008237 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLV 145 (573)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~e-EA~l~----~~gv~~~~~~~~~~~ 145 (573)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++.+ +..+. ......... .-
T Consensus 16 ~l~~l~~~l~~~g~~--r~lvvt~~~~~~~g~~~~v~~~L~-~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~----~D 88 (379)
T TIGR02638 16 AIEDIVDEVKRRGFK--KALVVTDKDLIKFGVADKVTDLLD-EAGIAYELFDEVKPNPTITVVKAGVAAFKASG----AD 88 (379)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhccchHHHHHHHH-HCCCeEEEECCCCCCcCHHHHHHHHHHHHhcC----CC
Confidence 344445556667764 566676666766545566666664 5689999987653 22111 111111221 13
Q ss_pred EEEEeCCCce
Q 008237 146 LSVDIGGGST 155 (573)
Q Consensus 146 lviDIGGGSt 155 (573)
.|+=|||||+
T Consensus 89 ~IiaiGGGSv 98 (379)
T TIGR02638 89 YLIAIGGGSP 98 (379)
T ss_pred EEEEeCChHH
Confidence 8999999996
No 161
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=42.15 E-value=37 Score=36.16 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChH-HHHHHHH--hhhhccCCCCCCceEE
Q 008237 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGE-QEAKFVY--MGVLQFLPVFDRLVLS 147 (573)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~-eEA~l~~--~gv~~~~~~~~~~~lv 147 (573)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +-|+++.+.++- .+..+.- .++.. .... +.-+|
T Consensus 11 ~~~~l~~~l~~~g~~--~~liv~~~~~~~~~~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~-~~~~-~~d~I 85 (370)
T cd08192 11 AIKELPAECAELGIK--RPLIVTDPGLAALGLVARVLALLE-DAGLAAALFDEVPPNPTEAAVEAGLAA-YRAG-GCDGV 85 (370)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHH-HHhc-CCCEE
Confidence 344555556667763 566676666655444566666554 358899888753 2222221 11111 1111 12389
Q ss_pred EEeCCCce
Q 008237 148 VDIGGGST 155 (573)
Q Consensus 148 iDIGGGSt 155 (573)
+-|||||+
T Consensus 86 IaiGGGSv 93 (370)
T cd08192 86 IAFGGGSA 93 (370)
T ss_pred EEeCCchH
Confidence 99999995
No 162
>PLN02669 xylulokinase
Probab=42.14 E-value=91 Score=35.25 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=43.6
Q ss_pred CCCeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcC---------CCC--CHHHH-HHHHHHHHHHHHH
Q 008237 11 PQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSS---------CSI--STQSQ-ARSVESLLMFRDI 78 (573)
Q Consensus 11 ~~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~---------g~l--s~e~i-~r~~~~L~~f~~~ 78 (573)
..+++-.||+||.|+|-+|++. +|+..-.......+.+-+.-... |.+ .+.-. +.+..++++..
T Consensus 6 ~~~~~LGiD~GT~s~Ka~l~d~--~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~-- 81 (556)
T PLN02669 6 EDSLFLGFDSSTQSLKATVLDS--NLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA-- 81 (556)
T ss_pred CCCeEEEEecccCCeEEEEEcC--CCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH--
Confidence 3467889999999999999973 45443332232222111111111 111 11122 44444455543
Q ss_pred HHHcCCCcccEEEEEehhhh
Q 008237 79 IQSHNISRDHTRAVATAAVR 98 (573)
Q Consensus 79 ~~~~~v~~~~i~~vATsA~R 98 (573)
+.+++..+|++++.++-+
T Consensus 82 --~~~~~~~~I~aIs~s~Q~ 99 (556)
T PLN02669 82 --KEKFPFHKVVAISGSGQQ 99 (556)
T ss_pred --HcCCChhhEEEEEecCCc
Confidence 236665679999987543
No 163
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=42.09 E-value=90 Score=33.38 Aligned_cols=77 Identities=13% Similarity=0.222 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHH----HhhhhccCCCCCCceE
Q 008237 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLVL 146 (573)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~e-EA~l~----~~gv~~~~~~~~~~~l 146 (573)
+.+..+.++.+|.. ++.+|....+.+..=.+.+.+.++ +.|+++.+.++-+ |..+. ......... .-+
T Consensus 18 l~~l~~~~~~~g~~--~~lvvtd~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~----~D~ 90 (382)
T PRK10624 18 IGALTDEVKRRGFK--KALIVTDKTLVKCGVVAKVTDVLD-AAGLAYEIYDGVKPNPTIEVVKEGVEVFKASG----ADY 90 (382)
T ss_pred HHHHHHHHHhcCCC--EEEEEeCcchhhCcchHHHHHHHH-HCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC----CCE
Confidence 44455556667763 567777676666444555555554 4689999987543 21111 111111121 138
Q ss_pred EEEeCCCce
Q 008237 147 SVDIGGGST 155 (573)
Q Consensus 147 viDIGGGSt 155 (573)
|+=|||||+
T Consensus 91 IIaiGGGS~ 99 (382)
T PRK10624 91 LIAIGGGSP 99 (382)
T ss_pred EEEeCChHH
Confidence 999999995
No 164
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=41.57 E-value=90 Score=33.64 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHH--HHhhhhccCCCCCCceEE
Q 008237 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKF--VYMGVLQFLPVFDRLVLS 147 (573)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~e-EA~l--~~~gv~~~~~~~~~~~lv 147 (573)
++++..+.++.+|.. ++.+|+...++++.=-+.+.+.++ +.|+++.+.++-+ |-.+ ...++...-. .+.-+|
T Consensus 36 ~~~~l~~~~~~~g~~--~~lvv~~~~~~~~g~~~~v~~~L~-~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~--~~~D~I 110 (395)
T PRK15454 36 AVSSCGQQAQTRGLK--HLFVMADSFLHQAGMTAGLTRSLA-VKGIAMTLWPCPVGEPCITDVCAAVAQLRE--SGCDGV 110 (395)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh--cCcCEE
Confidence 344455556667763 566776666765433466666664 4689888876544 2211 1122221111 112389
Q ss_pred EEeCCCce
Q 008237 148 VDIGGGST 155 (573)
Q Consensus 148 iDIGGGSt 155 (573)
+=|||||+
T Consensus 111 iavGGGS~ 118 (395)
T PRK15454 111 IAFGGGSV 118 (395)
T ss_pred EEeCChHH
Confidence 99999995
No 165
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=41.38 E-value=1.1e+02 Score=32.41 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHH----HhhhhccCCCCCCce
Q 008237 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLV 145 (573)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~e-EA~l~----~~gv~~~~~~~~~~~ 145 (573)
++++..+.+++++.. ++.+|....+.+..-.+.+.+.++ +.|+++.+.++-+ +..+. ......... .-
T Consensus 10 ~l~~l~~~l~~~~~~--~~lvv~~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~----~d 82 (370)
T cd08551 10 AIEKLGEEIKNLGGR--KALIVTDPGLVKTGVLDKVIDSLK-EAGIEVVIFDGVEPNPTLSNVDAAVAAYREEG----CD 82 (370)
T ss_pred HHHHHHHHHHHcCCC--eEEEEeCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCCCHHHHHHHHHHHHhcC----CC
Confidence 344555556667763 566676666655333455666665 3588888887532 22222 111111111 13
Q ss_pred EEEEeCCCce
Q 008237 146 LSVDIGGGST 155 (573)
Q Consensus 146 lviDIGGGSt 155 (573)
.|+-|||||+
T Consensus 83 ~IiaiGGGs~ 92 (370)
T cd08551 83 GVIAVGGGSV 92 (370)
T ss_pred EEEEeCCchH
Confidence 8999999995
No 166
>PRK00976 hypothetical protein; Provisional
Probab=40.01 E-value=4.7e+02 Score=27.51 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCcEEEeChHH--------------------HHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCC
Q 008237 104 DEFVECVREKVGFEVDVLTGEQ--------------------EAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRG 163 (573)
Q Consensus 104 ~~fl~~i~~~tG~~i~VIsg~e--------------------EA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~ 163 (573)
..+.+.|+ +.|+|+-+|.|-- ---..|+++. .....+.++.|||+ .|=....++|
T Consensus 94 ~~v~~~i~-~s~ip~~~iPGvh~~~~t~~p~~r~~sh~~s~eK~~ia~~a~~---~~~~~~fi~~diss-ntv~~~V~~g 168 (326)
T PRK00976 94 TRVYDEIK-ESGIPAVVIPGLHRGSPTLDPRFRVYSHIASPEKIGIAYNAYK---LFGFENFIVSDISS-NTVTLLVKDG 168 (326)
T ss_pred HHHHHHHH-hCCCCEEEeCceecCCCCCCHHHHHhccCCCHHHHHHHHHHHh---hcCCCcEEEEeccc-cEEEEEEECC
Confidence 56788884 5699988888754 1122233332 23346799999999 9988899999
Q ss_pred eEEEEE
Q 008237 164 KVVFCE 169 (573)
Q Consensus 164 ~~~~~~ 169 (573)
+++...
T Consensus 169 kIvgg~ 174 (326)
T PRK00976 169 KIVGAF 174 (326)
T ss_pred EEEccc
Confidence 998653
No 167
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=39.03 E-value=1.2e+02 Score=27.11 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHH
Q 008237 60 ISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKF 129 (573)
Q Consensus 60 ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l 129 (573)
.+.+.|..++ .+.++++++.+..|.++||-.++.. - .-+-.+-++.|++++..|.+|=...
T Consensus 14 ~~~e~i~~ai------~~~L~~~~l~~~si~~lasi~~K~~--E-~~L~~~A~~lg~pl~~~~~~eL~~~ 74 (126)
T PRK07027 14 VPAEQIEAAI------RAALAQRPLASADVRVVATLDLKAD--E-AGLLALCARHGWPLRAFSAAQLAAS 74 (126)
T ss_pred CCHHHHHHHH------HHHHHHcCCCHHHhheeEehhhhcC--C-HHHHHHHHHhCCCeEEeCHHHHHhc
Confidence 4666654433 3566778888888999999887643 2 3444555678999999998886543
No 168
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=36.63 E-value=56 Score=35.77 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=16.0
Q ss_pred EEEecccceEEEEEEEe
Q 008237 17 SIDMGTSSFKLLIIRAY 33 (573)
Q Consensus 17 vIDIGSNsirL~I~e~~ 33 (573)
+||+||.++|..+++.+
T Consensus 2 aiD~Gtt~~k~~l~~~~ 18 (454)
T TIGR02627 2 AVDLGASSGRVMLASYE 18 (454)
T ss_pred cEeccCCchheEEEEEc
Confidence 79999999999999986
No 169
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=35.87 E-value=1.6e+02 Score=31.38 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHH--HhhhhccCCCCCCceEE
Q 008237 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV--YMGVLQFLPVFDRLVLS 147 (573)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~e-EA~l~--~~gv~~~~~~~~~~~lv 147 (573)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ ..|+++.+.++-+ +..+. -.++..... . +.-.|
T Consensus 13 ~l~~l~~~l~~~g~~--~~lvvt~~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~-~~d~I 87 (374)
T cd08189 13 SLAQLPAAISQLGVK--KVLIVTDKGLVKLGLLDKVLEALE-GAGIEYAVYDGVPPDPTIENVEAGLALYRE-N-GCDAI 87 (374)
T ss_pred HHHHHHHHHHhcCCC--eEEEEeCcchhhcccHHHHHHHHH-hcCCeEEEeCCCCCCcCHHHHHHHHHHHHh-c-CCCEE
Confidence 345555566677763 677777666665322355555444 4588888887642 22221 111111111 1 11389
Q ss_pred EEeCCCce
Q 008237 148 VDIGGGST 155 (573)
Q Consensus 148 iDIGGGSt 155 (573)
+=|||||+
T Consensus 88 IaiGGGS~ 95 (374)
T cd08189 88 LAVGGGSV 95 (374)
T ss_pred EEeCCccH
Confidence 99999995
No 170
>PRK13331 pantothenate kinase; Reviewed
Probab=34.53 E-value=3.3e+02 Score=27.48 Aligned_cols=18 Identities=11% Similarity=0.181 Sum_probs=15.9
Q ss_pred eEEEEEecccceEEEEEE
Q 008237 14 LFASIDMGTSSFKLLIIR 31 (573)
Q Consensus 14 ~~AvIDIGSNsirL~I~e 31 (573)
.+-+||||=.++.+-+++
T Consensus 8 ~~L~iDiGNT~~~~g~f~ 25 (251)
T PRK13331 8 EWLALMIGNSRLHWGYFS 25 (251)
T ss_pred cEEEEEeCCCcEEEEEEE
Confidence 467999999999999997
No 171
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=34.09 E-value=45 Score=36.03 Aligned_cols=41 Identities=29% Similarity=0.290 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccc
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF 414 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~ 414 (573)
.|+--|+.+|..|=.+|.--. . .....|+++||+.||||.-
T Consensus 71 THSLEVAQIgRsia~~l~~~~------------~-~~~~dL~E~a~LaHDiGhP 111 (412)
T COG0232 71 THSLEVAQIGRSIARELGLDL------------D-LPFEDLVETACLAHDIGHP 111 (412)
T ss_pred hhhHHHHHHHHHHHHHhcccc------------C-CChHHHHHHHHHHhcCCCC
Confidence 677777777776644443110 0 1124799999999999964
No 172
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=33.85 E-value=2.5e+02 Score=25.72 Aligned_cols=87 Identities=15% Similarity=0.232 Sum_probs=55.4
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEE
Q 008237 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (573)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (573)
.+.++|.|+-+|=.-+.+... .--.++...+.. .-.+ ..++...+++++|++. ..+||
T Consensus 3 ~ilalD~G~KrIGvA~sd~~~-~~A~pl~~i~~~-----------~~~~-------~~~~~l~~li~~~~~~---~vVVG 60 (141)
T COG0816 3 RILALDVGTKRIGVAVSDILG-SLASPLETIKRK-----------NGKP-------QDFNALLKLVKEYQVD---TVVVG 60 (141)
T ss_pred eEEEEecCCceEEEEEecCCC-ccccchhhheec-----------cccH-------hhHHHHHHHHHHhCCC---EEEEe
Confidence 578999999999888886531 112222222111 0001 2345556677788774 45665
Q ss_pred -------ehhhhhcCChHHHHHHHHHHcCCcEEEeCh
Q 008237 94 -------TAAVRAAENKDEFVECVREKVGFEVDVLTG 123 (573)
Q Consensus 94 -------TsA~R~A~N~~~fl~~i~~~tG~~i~VIsg 123 (573)
|... .++-...|.++++++++++|...+.
T Consensus 61 lP~~m~g~~~~-~~~~~~~f~~~L~~r~~lpv~l~DE 96 (141)
T COG0816 61 LPLNMDGTEGP-RAELARKFAERLKKRFNLPVVLWDE 96 (141)
T ss_pred cCcCCCCCcch-hHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5555 5555789999999999999988775
No 173
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=33.09 E-value=63 Score=34.48 Aligned_cols=77 Identities=13% Similarity=0.237 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHHH--hhh--hccCCCCCCceE
Q 008237 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFVY--MGV--LQFLPVFDRLVL 146 (573)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~e-EA~l~~--~gv--~~~~~~~~~~~l 146 (573)
+++..+.++.+|.. ++.+|....+.+..=.+.+.+.++ ..|+++.+.++-+ |..+.- .++ ..... .-+
T Consensus 16 l~~l~~~l~~~g~~--~~lvv~~~~~~~~~~~~~v~~~L~-~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~----~D~ 88 (377)
T cd08176 16 IKEIGDELKNLGFK--KALIVTDKGLVKIGVVEKVTDVLD-EAGIDYVIYDGVKPNPTITNVKDGLAVFKKEG----CDF 88 (377)
T ss_pred HHHHHHHHHHhCCC--eEEEECCchHhhcCcHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcC----CCE
Confidence 44445556666763 566676655554333444555554 4589999998732 222211 111 11121 138
Q ss_pred EEEeCCCce
Q 008237 147 SVDIGGGST 155 (573)
Q Consensus 147 viDIGGGSt 155 (573)
|+=|||||+
T Consensus 89 IIavGGGS~ 97 (377)
T cd08176 89 IISIGGGSP 97 (377)
T ss_pred EEEeCCcHH
Confidence 999999996
No 174
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=32.80 E-value=1.5e+02 Score=32.94 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=54.4
Q ss_pred CCeEEEEEecccceEEEEEEEeCCCCEEEEEeee-eeeeeccCCCcCCCCCHHHHHHHHHHHHH-HHHHHHHc---CCCc
Q 008237 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLK-QPVILGRDLSSSCSISTQSQARSVESLLM-FRDIIQSH---NISR 86 (573)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k-~~vrLg~~~~~~g~ls~e~i~r~~~~L~~-f~~~~~~~---~v~~ 86 (573)
....-+||||.-|.-|++.+.. .+....+.. -.|||-+-.+.++.++++.++.+.+.++. +..+...+ +..
T Consensus 128 ~~~~lv~DIGGGStEl~~g~~~---~~~~~~Sl~~G~v~lt~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 203 (492)
T COG0248 128 KGDGLVIDIGGGSTELVLGDNF---EIGLLISLPLGCVRLTERFFPDDPISEENFAKARDAVREELEEIAKEYRIAGWA- 203 (492)
T ss_pred CCCEEEEEecCCeEEEEEecCC---ccceeEEeecceEEeehhhcCCCCCCHHHHHHHHHHHHHHHHhhhHHHHhhhhc-
Confidence 3457899999999999999632 233332332 35688888888899999999999988765 44444443 221
Q ss_pred ccEEEEEehhh
Q 008237 87 DHTRAVATAAV 97 (573)
Q Consensus 87 ~~i~~vATsA~ 97 (573)
.+|||+..
T Consensus 204 ---~~vg~sGT 211 (492)
T COG0248 204 ---GLVGTSGT 211 (492)
T ss_pred ---cEEEccHH
Confidence 26787654
No 175
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=32.71 E-value=19 Score=34.28 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCCchhh
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQ 423 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~~i~~~~~~kh 423 (573)
.|+..++.+|..|-..+ +. ....-.-.|++|||||..+-.....++
T Consensus 97 ~~s~~~a~~a~~la~~~----~~-------------~~~~~a~~~gLL~~iG~l~l~~~~~~~ 142 (196)
T PF08668_consen 97 RHSLAAAAIARRLAREL----GF-------------DDPDEAYLAGLLHDIGKLLLLSLFPEY 142 (196)
T ss_dssp HHHHHHHHHHHHHHHHC----TC-------------CHHHHHHHHHHHTTHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHc----CC-------------CCHHHHHHHHHHHHHhHHHHHHHhHHH
Confidence 46667777777654333 21 113568899999999998866554443
No 176
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=32.35 E-value=5.5e+02 Score=26.22 Aligned_cols=128 Identities=23% Similarity=0.271 Sum_probs=79.9
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEE
Q 008237 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (573)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (573)
.+..||||.-...+... +|....++..--| +-. .-+|+-++|+++.. .+.++ .+-+|-
T Consensus 4 kilGiDIGGAntk~a~~----DG~~~~~d~~YlP------MWk-------~k~rL~~~Lkei~~---k~~~~--~vgvvM 61 (330)
T COG1548 4 KILGIDIGGANTKIASS----DGDNYKIDHIYLP------MWK-------KKDRLEETLKEIVH---KDNVD--YVGVVM 61 (330)
T ss_pred eEEEeeccCccchhhhc----cCCeeeeeEEEec------ccc-------chhHHHHHHHHHhc---cCCcc--eeEEEe
Confidence 36789999887777662 4544334333222 111 12345566666654 35553 577788
Q ss_pred ehhhhhcCC-----hHHHHHHHHHHcCCcEEEeChH-----HHHHHHHhhhh--cc------C-CCCCCceEEEEeCCCc
Q 008237 94 TAAVRAAEN-----KDEFVECVREKVGFEVDVLTGE-----QEAKFVYMGVL--QF------L-PVFDRLVLSVDIGGGS 154 (573)
Q Consensus 94 TsA~R~A~N-----~~~fl~~i~~~tG~~i~VIsg~-----eEA~l~~~gv~--~~------~-~~~~~~~lviDIGGGS 154 (573)
|+-+-+|=| -+++++.++...+-++.+++-+ -||.=.+.-+. +. + ....++.+++|+|+-.
T Consensus 62 TaELaD~f~tk~eGVe~Ii~~v~~Af~~pv~~v~~~G~~~ssEa~~~~~~vAAaNW~Ata~~~~e~~~dsci~VD~GSTT 141 (330)
T COG1548 62 TAELADAFKTKAEGVEDIIDTVEKAFNCPVYVVDVNGNFLSSEALKNPREVAAANWVATARFLAEEIKDSCILVDMGSTT 141 (330)
T ss_pred eHHHHHHhhhHHhHHHHHHHHHHHhcCCceEEEeccCcCcChhHhcCHHHHHHhhhHHHHHHHHHhcCCceEEEecCCcc
Confidence 998887754 3678899999999999887532 15543333332 21 1 1123458999999999
Q ss_pred eEEEEeeCC
Q 008237 155 TEFVIGKRG 163 (573)
Q Consensus 155 tEl~~~~~~ 163 (573)
|.|+-..+|
T Consensus 142 tDIIPi~~g 150 (330)
T COG1548 142 TDIIPIKDG 150 (330)
T ss_pred cceEeecch
Confidence 999977655
No 177
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=31.90 E-value=55 Score=34.06 Aligned_cols=78 Identities=14% Similarity=0.250 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHHHHh-hhhccCCCCCCceEEEE
Q 008237 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFVYM-GVLQFLPVFDRLVLSVD 149 (573)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eE-A~l~~~-gv~~~~~~~~~~~lviD 149 (573)
+.+..+.++.++.. ++.+|....+++ .=.+.+.+.+++. +++.+.++.+. .-+.-. .+...+.. .+.-.|+=
T Consensus 11 l~~l~~~~~~~g~~--~~liv~~~~~~~-~~~~~v~~~l~~~--~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IIa 84 (332)
T cd07766 11 IEKIGEEIKRGGFD--RALVVSDEGVVK-GVGEKVADSLKKL--IAVHIFDGVGPNPTFEEVKEAVERARA-AEVDAVIA 84 (332)
T ss_pred HHHHHHHHHhcCCC--eEEEEeCCchhh-hHHHHHHHHHHhc--CcEEEeCCcCCCcCHHHHHHHHHHHHh-cCcCEEEE
Confidence 34444455566763 577777777766 3344455555443 67777765432 222111 11111110 12248999
Q ss_pred eCCCce
Q 008237 150 IGGGST 155 (573)
Q Consensus 150 IGGGSt 155 (573)
|||||+
T Consensus 85 iGGGs~ 90 (332)
T cd07766 85 VGGGST 90 (332)
T ss_pred eCCchH
Confidence 999996
No 178
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=31.83 E-value=6.4e+02 Score=26.69 Aligned_cols=27 Identities=19% Similarity=0.491 Sum_probs=21.9
Q ss_pred CCceEEEEeCCCceEEEEeeCCeEEEEE
Q 008237 142 DRLVLSVDIGGGSTEFVIGKRGKVVFCE 169 (573)
Q Consensus 142 ~~~~lviDIGGGStEl~~~~~~~~~~~~ 169 (573)
+.+.+++=+|+|.. +....+|+++...
T Consensus 173 ~~~~I~~hLGtGig-~~ai~~Gk~vdgs 199 (351)
T TIGR02707 173 EMNLIVAHMGGGIS-VAAHRKGRVIDVN 199 (351)
T ss_pred cCCEEEEEeCCCce-eeeEECCEEEEcC
Confidence 34799999999999 7788889887553
No 179
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=30.96 E-value=22 Score=40.96 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=18.3
Q ss_pred HHHHHHhhcccccCC--------CCchhhhHHHH
Q 008237 403 EAACLLHNIGHFTSK--------KGYHKQSCHII 428 (573)
Q Consensus 403 ~~Aa~LhdiG~~i~~--------~~~~khs~yiI 428 (573)
-.||+|||||+.+.- ..|+++++..+
T Consensus 2 ~~~aLLHDIGK~~~Ra~~~~~~~~~h~~~g~~~~ 35 (648)
T TIGR02578 2 AVAALLHDIGKVIRRAGDCYNEDLKHDKTGYEFI 35 (648)
T ss_pred chhhhhhccchhhhhcccCcccccchhhhhHHHH
Confidence 468999999999973 34555555444
No 180
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=30.11 E-value=86 Score=33.86 Aligned_cols=20 Identities=25% Similarity=0.581 Sum_probs=17.7
Q ss_pred CeEEEEEecccceEEEEEEE
Q 008237 13 TLFASIDMGTSSFKLLIIRA 32 (573)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~ 32 (573)
++++.||+||.+.+.+|++-
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~ 21 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDD 21 (432)
T ss_pred ceEEEEEcCchhEEEEEEcC
Confidence 46899999999999999963
No 181
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=29.75 E-value=2.4e+02 Score=30.35 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH---HHHHHHhhhh--ccCCCCCCce
Q 008237 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ---EAKFVYMGVL--QFLPVFDRLV 145 (573)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~e---EA~l~~~gv~--~~~~~~~~~~ 145 (573)
+++...+.+..+|+. ++.+|.+..+.++.=.+.+++.++.+ |+++.|-++-+ .-.-...|+. .... .=
T Consensus 16 ~l~~l~~~~~~~g~~--r~liVTd~~~~~~g~~~~v~~~L~~~-~i~~~if~~v~p~P~~~~v~~~~~~~~~~~----~D 88 (377)
T COG1454 16 SLKELGEEVKRLGAK--RALIVTDRGLAKLGLLDKVLDSLDAA-GIEYEVFDEVEPEPTIETVEAGAEVAREFG----PD 88 (377)
T ss_pred hHHHHHHHHHhcCCC--ceEEEECCccccchhHHHHHHHHHhc-CCeEEEecCCCCCCCHHHHHHHHHHHHhcC----CC
Confidence 566677777888885 68889999988888778888887764 78888876522 1111122222 2222 12
Q ss_pred EEEEeCCCce
Q 008237 146 LSVDIGGGST 155 (573)
Q Consensus 146 lviDIGGGSt 155 (573)
.||=+||||+
T Consensus 89 ~iIalGGGS~ 98 (377)
T COG1454 89 TIIALGGGSV 98 (377)
T ss_pred EEEEeCCccH
Confidence 8999999995
No 182
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=29.61 E-value=87 Score=27.14 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCC---cEEEeChHHH-----HHHHHhhhhccCCCCCCceEEEEeCCCce
Q 008237 105 EFVECVREKVGF---EVDVLTGEQE-----AKFVYMGVLQFLPVFDRLVLSVDIGGGST 155 (573)
Q Consensus 105 ~fl~~i~~~tG~---~i~VIsg~eE-----A~l~~~gv~~~~~~~~~~~lviDIGGGSt 155 (573)
.+.+.++.-+|- +++.++...+ -.-.+..+...++..++-.++.|++|||.
T Consensus 13 g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 13 GLLESAEMILGEDQDNIEAVDLYPDESIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp HHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred HHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 445555555555 4555543321 12222233344443445578899999984
No 183
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=29.60 E-value=75 Score=33.86 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeCh-HHHHHHH--HhhhhccCCCCCCceEE
Q 008237 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTG-EQEAKFV--YMGVLQFLPVFDRLVLS 147 (573)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg-~eEA~l~--~~gv~~~~~~~~~~~lv 147 (573)
++++..+.+++++.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++ +.|..+. ..++...-. . +.-.|
T Consensus 10 ~~~~l~~~~~~~~~~--r~livt~~~~~~~g~~~~v~~~L~-~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~-~-~~D~I 84 (375)
T cd08194 10 AVDETGAVLADLGGK--RPLIVTDKVMVKLGLVDKLTDSLK-KEGIESAIFDDVVSEPTDESVEEGVKLAKE-G-GCDVI 84 (375)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhcchHHHHHHHHH-HCCCeEEEECCCCCCcCHHHHHHHHHHHHh-c-CCCEE
Confidence 455555666666663 566776666664322344444443 45888888875 2233222 112111111 1 11389
Q ss_pred EEeCCCce
Q 008237 148 VDIGGGST 155 (573)
Q Consensus 148 iDIGGGSt 155 (573)
+=|||||+
T Consensus 85 IaiGGGS~ 92 (375)
T cd08194 85 IALGGGSP 92 (375)
T ss_pred EEeCCchH
Confidence 99999995
No 184
>PRK13321 pantothenate kinase; Reviewed
Probab=29.18 E-value=90 Score=31.38 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=23.9
Q ss_pred eEEEEeCCCceEEEEeeCCeEEEEEEEeh
Q 008237 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (573)
Q Consensus 145 ~lviDIGGGStEl~~~~~~~~~~~~Slpl 173 (573)
.+.+||||-++.+.+++++++...+.+|-
T Consensus 2 iL~IDIGnT~ik~gl~~~~~i~~~~~~~T 30 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDRLLRSFRLPT 30 (256)
T ss_pred EEEEEECCCeEEEEEEECCEEEEEEEEec
Confidence 47899999999999999888776666653
No 185
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=29.10 E-value=1.8e+02 Score=32.33 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=37.7
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeee-eeeeccCCCcCCCCCHHHHHHHHHHHH
Q 008237 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQ-PVILGRDLSSSCSISTQSQARSVESLL 73 (573)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~-~vrLg~~~~~~g~ls~e~i~r~~~~L~ 73 (573)
..-+||||+-|+-+.+++ ++.+....+..- .|||-+..+..+..+++.+.++.+.+.
T Consensus 133 ~~lviDIGGGStEl~~~~---~~~~~~~~Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~ 190 (496)
T PRK11031 133 QRLVVDIGGASTELVTGT---GAQATSLFSLSMGCVTWLERYFKDRNLTQENFDAAEKAAR 190 (496)
T ss_pred CEEEEEecCCeeeEEEec---CCceeeeeEEeccchHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 368999999999999885 333333322222 357777777777788777766655544
No 186
>PRK00292 glk glucokinase; Provisional
Probab=28.13 E-value=4.1e+02 Score=27.33 Aligned_cols=122 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred CCeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEE
Q 008237 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (573)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (573)
.+++.+||||..++|+.+++.. ++.+ +.+.+.++.- .+...+++..|.+......+ .-.+
T Consensus 1 ~~~~lgiDIGgT~i~~~l~~~~-~~~~--~~~~~~~~~~--------------~~~~~~~l~~~l~~~~~~~~---~gig 60 (316)
T PRK00292 1 MKPALVGDIGGTNARFALCDWA-NGEI--EQIKTYATAD--------------YPSLEDAIRAYLADEHGVQV---RSAC 60 (316)
T ss_pred CceEEEEEcCccceEEEEEecC-CCce--eeeEEEecCC--------------CCCHHHHHHHHHHhccCCCC---ceEE
Q ss_pred EEehhhhh-------cCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhh--------hhccCCCCCCceEEEEeCCC
Q 008237 92 VATAAVRA-------AENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMG--------VLQFLPVFDRLVLSVDIGGG 153 (573)
Q Consensus 92 vATsA~R~-------A~N~~~fl~~i~~~tG~~-i~VIsg~eEA~l~~~g--------v~~~~~~~~~~~lviDIGGG 153 (573)
+|....=+ ..+-....+.+++++|++ |.+.+.-+=+-|.-.- .-..-+...++.+++-+|.|
T Consensus 61 Ig~pG~vd~~~i~~~n~~w~~~~~~l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG 138 (316)
T PRK00292 61 FAIAGPVDGDEVRMTNHHWAFSIAAMKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG 138 (316)
T ss_pred EEEeCcccCCEEEecCCCcccCHHHHHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc
No 187
>COG4680 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.47 E-value=50 Score=27.78 Aligned_cols=19 Identities=26% Similarity=0.602 Sum_probs=15.6
Q ss_pred EEEEEecccceEEEEEEEe
Q 008237 15 FASIDMGTSSFKLLIIRAY 33 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~ 33 (573)
.-|+|||.|+.||++.-.-
T Consensus 56 r~Vfdi~GN~yRLIvhv~y 74 (98)
T COG4680 56 RVVFDIGGNKYRLIVHVAY 74 (98)
T ss_pred eEEEEcCCCEEEEEEEEEe
Confidence 3699999999999987443
No 188
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=26.85 E-value=2.3e+02 Score=30.26 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCCcccEEEEEehhh-hhcCChHHHHHHHHHHcCCcEEEeChHH-----HHHHHHhhhhccCCCCCCceEE
Q 008237 74 MFRDIIQSHNISRDHTRAVATAAV-RAAENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVFDRLVLS 147 (573)
Q Consensus 74 ~f~~~~~~~~v~~~~i~~vATsA~-R~A~N~~~fl~~i~~~tG~~i~VIsg~e-----EA~l~~~gv~~~~~~~~~~~lv 147 (573)
+..+.++.+| + ++.+|..... +...=.+.+.+.++ +.|+++.+.++-+ |.-........... .-.|
T Consensus 16 ~l~~~~~~~g-~--r~livt~~~~~~~~g~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~----~D~I 87 (380)
T cd08185 16 ELGEEALKPG-K--KALIVTGNGSSKKTGYLDRVIELLK-QAGVEVVVFDKVEPNPTTTTVMEGAALAREEG----CDFV 87 (380)
T ss_pred HHHHHHHhcC-C--eEEEEeCCCchhhccHHHHHHHHHH-HcCCeEEEeCCccCCCCHHHHHHHHHHHHHcC----CCEE
Confidence 3334445566 2 5666665443 44332344554444 3588998887643 21111111122222 1389
Q ss_pred EEeCCCce
Q 008237 148 VDIGGGST 155 (573)
Q Consensus 148 iDIGGGSt 155 (573)
+=|||||+
T Consensus 88 iavGGGS~ 95 (380)
T cd08185 88 VGLGGGSS 95 (380)
T ss_pred EEeCCccH
Confidence 99999995
No 189
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=25.91 E-value=2.3e+02 Score=29.86 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHHH----HhhhhccCCCCCCceEEE
Q 008237 74 MFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFV----YMGVLQFLPVFDRLVLSV 148 (573)
Q Consensus 74 ~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eE-A~l~----~~gv~~~~~~~~~~~lvi 148 (573)
++.+.++.++.. ++.+|..+.+.+. =.+.+.+.++...++++.++++-|+ ..+. .......... ++.-+|+
T Consensus 13 ~l~~~~~~~~~~--k~livtd~~v~~~-~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~-~r~d~II 88 (344)
T cd08169 13 SVESYTTRDLFD--QYFFISDSGVADL-IAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGA-NRRTAIV 88 (344)
T ss_pred HHHHHHHhcCCC--eEEEEECccHHHH-HHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCC-CCCcEEE
Confidence 333445555653 5667776666551 2233333333214777788875333 2221 1111222221 2235899
Q ss_pred EeCCCceE
Q 008237 149 DIGGGSTE 156 (573)
Q Consensus 149 DIGGGStE 156 (573)
=|||||+-
T Consensus 89 aiGGGsv~ 96 (344)
T cd08169 89 AVGGGATG 96 (344)
T ss_pred EECCcHHH
Confidence 99999864
No 190
>PRK13318 pantothenate kinase; Reviewed
Probab=25.63 E-value=1.2e+02 Score=30.42 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=24.6
Q ss_pred eEEEEeCCCceEEEEeeCCeEEEEEEEeh
Q 008237 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (573)
Q Consensus 145 ~lviDIGGGStEl~~~~~~~~~~~~Slpl 173 (573)
.+.+||||-++.+.+++++++....++|.
T Consensus 2 iL~IDIGnT~iK~al~d~g~i~~~~~~~t 30 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGKLVAHWRIST 30 (258)
T ss_pred EEEEEECCCcEEEEEEECCEEEEEEEEeC
Confidence 47899999999999999888877766654
No 191
>PF13941 MutL: MutL protein
Probab=25.18 E-value=1.3e+02 Score=33.10 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=35.9
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeecc-CCCcCCCCCHHHHHHHHHHHHHH
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR-DLSSSCSISTQSQARSVESLLMF 75 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~-~~~~~g~ls~e~i~r~~~~L~~f 75 (573)
+=++||||-..+...++.. .+..+++..-+.++-... ++ ..++.++++.|++-
T Consensus 2 ~L~~DiGST~Tk~~l~d~~-~~~~~~ig~a~apTTv~~~Dv-------~~G~~~A~~~l~~~ 55 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLV-DGEPRLIGQAEAPTTVEPGDV-------TIGLNNALEQLEEQ 55 (457)
T ss_pred EEEEEeCCcceEEeEEecc-CCccEEEEEEeCCCCcCcccH-------HHHHHHHHHHHHHh
Confidence 3589999999999999954 567888877776655533 21 24555555555443
No 192
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=25.12 E-value=2.8e+02 Score=29.66 Aligned_cols=77 Identities=16% Similarity=0.137 Sum_probs=40.2
Q ss_pred HHHHHHHHHHc---CCCcccEEEEEehhhhh-cCChHHHHHHHHHHcCCcEEEeChHH-----HHHHHHhhhhccCCCCC
Q 008237 72 LLMFRDIIQSH---NISRDHTRAVATAAVRA-AENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVFD 142 (573)
Q Consensus 72 L~~f~~~~~~~---~v~~~~i~~vATsA~R~-A~N~~~fl~~i~~~tG~~i~VIsg~e-----EA~l~~~gv~~~~~~~~ 142 (573)
+++..+.++.+ |.. ++.+|....+.+ ..-.+.+.+.++ +.|+++.+.++-+ |.--..........
T Consensus 11 ~~~l~~~l~~~~~~g~k--r~livtd~~~~~~~g~~~~v~~~L~-~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~--- 84 (383)
T cd08186 11 IEKIGEILKDLKSKGIS--KVLLVTGKSAYKKSGAWDKVEPALD-EHGIEYVLYNKVTPNPTVDQVDEAAKLGREFG--- 84 (383)
T ss_pred HHHHHHHHHHhcccCCC--EEEEEcCccHHhhcChHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcC---
Confidence 33444444444 553 566666544433 322355666554 4699999987543 11111111122222
Q ss_pred CceEEEEeCCCce
Q 008237 143 RLVLSVDIGGGST 155 (573)
Q Consensus 143 ~~~lviDIGGGSt 155 (573)
.-+|+=|||||+
T Consensus 85 -~D~IIaiGGGS~ 96 (383)
T cd08186 85 -AQAVIAIGGGSP 96 (383)
T ss_pred -CCEEEEeCCccH
Confidence 138999999995
No 193
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=24.89 E-value=1.4e+02 Score=31.34 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCc--EEEeChHHHHHHHHhhhhccCCCCCCceEEEE
Q 008237 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFE--VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVD 149 (573)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~--i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviD 149 (573)
+.+..+.++.|| . ++.+|....+.+ ...+.+.+.+++. |+. +.+.+|+-.-.-.-.++..... . +.-.|+=
T Consensus 11 ~~~l~~~~~~~g-~--~~liv~~~~~~~-~~~~~v~~~l~~~-~i~~~~~~~~~~p~~~~v~~~~~~~~~-~-~~d~IIa 83 (349)
T cd08550 11 IKEIAAILSTFG-S--KVAVVGGKTVLK-KSRPRFEAALAKS-IIVVDVIVFGGECSTEEVVKALCGAEE-Q-EADVIIG 83 (349)
T ss_pred HHHHHHHHHHcC-C--eEEEEEChHHHH-HHHHHHHHHHHhc-CCeeEEEEcCCCCCHHHHHHHHHHHHh-c-CCCEEEE
Confidence 344444556677 2 455566555554 4456666665543 664 4456664111111111111111 1 1238999
Q ss_pred eCCCce
Q 008237 150 IGGGST 155 (573)
Q Consensus 150 IGGGSt 155 (573)
|||||+
T Consensus 84 vGGGs~ 89 (349)
T cd08550 84 VGGGKT 89 (349)
T ss_pred ecCcHH
Confidence 999996
No 194
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=24.70 E-value=2.4e+02 Score=27.46 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=35.1
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHH
Q 008237 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRD 77 (573)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~ 77 (573)
.|=+||+|..++|..++++..++.+.+ ...+..+. +.+.. |. .++-.+-..+++..|..
T Consensus 64 ~~LalDlGGTnlRv~~V~L~g~~~~~~-~~~~~~ip--~~~~~-~~-~~~lFd~ia~~i~~f~~ 122 (206)
T PF00349_consen 64 DFLALDLGGTNLRVALVELSGNGKVEI-EQEKYKIP--EELMN-GS-GEELFDFIADCIAEFLK 122 (206)
T ss_dssp EEEEEEESSSSEEEEEEEEESSSEEEE-EEEEEE----HHHHT-SB-HHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecCcEEEEEEEEEcCCCCcee-eeccccCC--hHHhc-CC-cccHHHHHHHHHHHHHH
Confidence 788999999999999999986553433 33333322 22111 11 04555666666666654
No 195
>PF11762 Arabinose_Iso_C: L-arabinose isomerase C-terminal domain; InterPro: IPR024664 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source []. This entry represents a C-terminal non-catalytic domain in L-arabinose isomerase.; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=23.92 E-value=1e+02 Score=27.13 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=16.0
Q ss_pred eEEEEEecccceEEEEEEEe
Q 008237 14 LFASIDMGTSSFKLLIIRAY 33 (573)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~ 33 (573)
..+.+|+| |-+||++.+++
T Consensus 32 ~~slvD~G-~rFRLi~n~v~ 50 (115)
T PF11762_consen 32 VVSLVDMG-DRFRLIVNEVD 50 (115)
T ss_dssp EEEEEE-S-SSEEEEEEEEE
T ss_pred EEEEeecC-CcEEEEEEEEE
Confidence 46899999 99999999987
No 196
>PRK12408 glucokinase; Provisional
Probab=23.88 E-value=3e+02 Score=28.81 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=54.8
Q ss_pred ccCCC-CeEEEEEecccceEEEEEEEeCCCC----EEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHc
Q 008237 8 MQIPQ-TLFASIDMGTSSFKLLIIRAYPNGK----FLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSH 82 (573)
Q Consensus 8 ~~~~~-~~~AvIDIGSNsirL~I~e~~~~~~----~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~ 82 (573)
..|++ ..+-+||||...+|+-+++.+ +. ..++...+.++. ..+.+. ++++.|.+- ..
T Consensus 10 ~~~~~~~~~L~~DIGGT~i~~al~d~~--g~~~~~~~~~~~~~~~t~-----------~~~~~~---~~i~~~~~~--~~ 71 (336)
T PRK12408 10 VAVPRPESFVAADVGGTHVRVALVCAS--PDAAKPVELLDYRTYRCA-----------DYPSLA---AILADFLAE--CA 71 (336)
T ss_pred ccCcccccEEEEEcChhhhheeEEecc--CCccccccccceeEecCC-----------CccCHH---HHHHHHHhc--CC
Confidence 34443 347899999999999999743 32 123333333222 112232 334444321 11
Q ss_pred CCCcccEEEEEehhh-h-h----cCCh--HHHHHHHHHHcCCc-EEEeChHHHHHHH
Q 008237 83 NISRDHTRAVATAAV-R-A----AENK--DEFVECVREKVGFE-VDVLTGEQEAKFV 130 (573)
Q Consensus 83 ~v~~~~i~~vATsA~-R-~----A~N~--~~fl~~i~~~tG~~-i~VIsg~eEA~l~ 130 (573)
.+ .-.++|.... . + +.|- ..+-+.+++++|++ |.+++.-+=+-|.
T Consensus 72 ~~---~~igIg~pG~~~~~g~v~~~nl~w~~~~~~l~~~~~~~~V~l~ND~naaa~g 125 (336)
T PRK12408 72 PV---RRGVIASAGYALDDGRVITANLPWTLSPEQIRAQLGLQAVHLVNDFEAVAYA 125 (336)
T ss_pred Cc---CEEEEEecCCceECCEEEecCCCCccCHHHHHHHcCCCeEEEeecHHHHHcc
Confidence 12 2244554443 1 0 2232 22457788899995 9999987766555
No 197
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=23.50 E-value=3.3e+02 Score=28.89 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHHH--HhhhhccCCCCCCceEE
Q 008237 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFV--YMGVLQFLPVFDRLVLS 147 (573)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eE-A~l~--~~gv~~~~~~~~~~~lv 147 (573)
++++..+.++.++.. ++.+|....+++..=.+.+.+.++ +.|+++.+.++-+. ..+. -.++..... .+.-.|
T Consensus 13 ~l~~l~~~l~~~~~~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~I 87 (376)
T cd08193 13 SLARLGELLAALGAK--RVLVVTDPGILKAGLIDPLLASLE-AAGIEVTVFDDVEADPPEAVVEAAVEAARA--AGADGV 87 (376)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh--cCCCEE
Confidence 344555556666764 566676666655333455555443 45888888764322 1111 111111111 112389
Q ss_pred EEeCCCce
Q 008237 148 VDIGGGST 155 (573)
Q Consensus 148 iDIGGGSt 155 (573)
+=|||||+
T Consensus 88 IaiGGGs~ 95 (376)
T cd08193 88 IGFGGGSS 95 (376)
T ss_pred EEeCCchH
Confidence 99999995
No 198
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=23.49 E-value=1.2e+02 Score=31.98 Aligned_cols=75 Identities=13% Similarity=0.231 Sum_probs=40.7
Q ss_pred HHHHHHHcCCCcccEEEEEehhh-hhcCChHHHHHHHHHHcCCcEEEeChH-HHHHHHHh--hhhccCCCCCCceEEEEe
Q 008237 75 FRDIIQSHNISRDHTRAVATAAV-RAAENKDEFVECVREKVGFEVDVLTGE-QEAKFVYM--GVLQFLPVFDRLVLSVDI 150 (573)
Q Consensus 75 f~~~~~~~~v~~~~i~~vATsA~-R~A~N~~~fl~~i~~~tG~~i~VIsg~-eEA~l~~~--gv~~~~~~~~~~~lviDI 150 (573)
..+.++.+| . ++.+|....+ +.+.-.+.+.+.++ +.|+++.+.++- .+..+.-. ++..... .+.-+|+=|
T Consensus 17 l~~~~~~~g-~--r~lvVt~~~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIav 90 (357)
T cd08181 17 HGEELAALG-K--RALIVTGKSSAKKNGSLDDVTKALE-ELGIEYEIFDEVEENPSLETIMEAVEIAKK--FNADFVIGI 90 (357)
T ss_pred HHHHHHHcC-C--EEEEEeCCchHhhcCcHHHHHHHHH-HcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEEe
Confidence 334455566 2 5666765554 54544466666664 458889888753 23222211 1111111 112389999
Q ss_pred CCCce
Q 008237 151 GGGST 155 (573)
Q Consensus 151 GGGSt 155 (573)
||||+
T Consensus 91 GGGSv 95 (357)
T cd08181 91 GGGSP 95 (357)
T ss_pred CCchH
Confidence 99995
No 199
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=23.13 E-value=81 Score=33.62 Aligned_cols=78 Identities=19% Similarity=0.164 Sum_probs=49.8
Q ss_pred cCCCcccEEEEEehhhhh-cCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe
Q 008237 82 HNISRDHTRAVATAAVRA-AENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (573)
Q Consensus 82 ~~v~~~~i~~vATsA~R~-A~N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~ 160 (573)
..+++...=++-|++.=+ -.|++...+...+...++.=-|-- ++-+. ++......++|+|||+++|-++-+
T Consensus 100 Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k--~~v~~------AFA~GrstalVvDiGa~~~svsPV 171 (426)
T KOG0679|consen 100 LKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAK--TAVCT------AFANGRSTALVVDIGATHTSVSPV 171 (426)
T ss_pred hhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEec--hHHHH------HHhcCCCceEEEEecCCCceeeee
Confidence 356665566677776533 245566666666766666544432 22222 233334568999999999999999
Q ss_pred eCCeEEE
Q 008237 161 KRGKVVF 167 (573)
Q Consensus 161 ~~~~~~~ 167 (573)
.+|-++.
T Consensus 172 ~DG~Vlq 178 (426)
T KOG0679|consen 172 HDGYVLQ 178 (426)
T ss_pred ecceEee
Confidence 8887763
No 200
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=22.98 E-value=1.3e+02 Score=30.00 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhccc
Q 008237 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (573)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~lL~~Aa~LhdiG~ 413 (573)
.||-.|...+-.+..... +.. .+++-+..-+-.||+.||+|.
T Consensus 5 ~Ha~dV~q~~~~ll~~~~----~~~-------~l~~~e~~alliAal~HDv~H 46 (237)
T PF00233_consen 5 RHAADVLQFVYYLLSNGG----LRE-------YLSPLEIFALLIAALCHDVDH 46 (237)
T ss_dssp HHHHHHHHHHHHHHHHGG----GGT-------TS-HHHHHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHccC----ccc-------cCCHHHHHHHHHHHHHhcCCC
Confidence 577777776655543221 111 256677788999999999995
No 201
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=22.84 E-value=1.7e+02 Score=30.71 Aligned_cols=74 Identities=19% Similarity=0.181 Sum_probs=38.2
Q ss_pred HHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHH--HH-HhhhhccCCCCCCceEEEEeCCC
Q 008237 77 DIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAK--FV-YMGVLQFLPVFDRLVLSVDIGGG 153 (573)
Q Consensus 77 ~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIsg~eEA~--l~-~~gv~~~~~~~~~~~lviDIGGG 153 (573)
+.++.++.. .++.+|....+.+.. ++.+.+.++ +.|+++.+.+++.+.. +. ...+...+.. +.-+|+=||||
T Consensus 16 ~~~~~~~~~-~kvlivtd~~~~~~~-~~~i~~~L~-~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~--~~d~IIaiGGG 90 (332)
T cd08549 16 PIINKIGVN-SKIMIVCGNNTYKVA-GKEIIERLE-SNNFTKEVLERDSLLIPDEYELGEVLIKLDK--DTEFLLGIGSG 90 (332)
T ss_pred HHHHHcCCC-CcEEEEECCcHHHHH-HHHHHHHHH-HcCCeEEEEecCCCCCCCHHHHHHHHHHhhc--CCCEEEEECCc
Confidence 344445532 256667666665542 455555443 4588888876543321 11 1111111111 23489999999
Q ss_pred ce
Q 008237 154 ST 155 (573)
Q Consensus 154 St 155 (573)
|+
T Consensus 91 sv 92 (332)
T cd08549 91 TI 92 (332)
T ss_pred HH
Confidence 86
No 202
>PRK03011 butyrate kinase; Provisional
Probab=22.74 E-value=5.9e+02 Score=27.05 Aligned_cols=148 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCeEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEE
Q 008237 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (573)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (573)
...+=+|.-||.|.++-+++-...---+.|....+...-...+.+.-.+ .++...+.+++.|+...++.+
T Consensus 1 ~~~il~inpgststk~a~~~~~~~~~~~~~~h~~~~~~~~~~~~~q~~~----------r~~~i~~~l~~~g~~~~~l~a 70 (358)
T PRK03011 1 MMRILVINPGSTSTKIAVFEDEKPIFEETLRHSAEELEKFKTIIDQYEF----------RKQAILDFLKEHGIDLSELDA 70 (358)
T ss_pred CCEEEEEcCCCchheEEEEcCCceeeeeccccCHHHHhcCCCccchHHH----------HHHHHHHHHHHcCCChhcceE
Q ss_pred EEeh-----hhhhcCC----------------------hHHHHHHHHHHcCCcEEEeCh------HHHHHHHHh------
Q 008237 92 VATA-----AVRAAEN----------------------KDEFVECVREKVGFEVDVLTG------EQEAKFVYM------ 132 (573)
Q Consensus 92 vATs-----A~R~A~N----------------------~~~fl~~i~~~tG~~i~VIsg------~eEA~l~~~------ 132 (573)
|+-- .+.--.. +.....++.++.|+++-|.+- .++||+.-+
T Consensus 71 v~~RgG~~~~v~gG~~~v~~~~~~~l~~~~~~~~~~nl~~~~a~~~~~~~~~p~~v~D~~~~~~~~~~a~~~~lp~i~R~ 150 (358)
T PRK03011 71 VVGRGGLLKPIPGGTYRVNEAMLEDLKNGKYGEHASNLGAIIAYEIAKELGIPAFIVDPVVVDEMEPVARISGLPEIERK 150 (358)
T ss_pred EEEcCCCCcccCCCCEEcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCCEEEECCcccccCCHHHHHcCCCCccee
Q ss_pred ---------------hhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEE
Q 008237 133 ---------------GVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCES 170 (573)
Q Consensus 133 ---------------gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~S 170 (573)
+-....+..+.+.+++-+|+|. -+....+|+++...+
T Consensus 151 ~gfHgln~~~va~~~a~~~g~~~~~~n~I~~hLGtGi-g~gai~~Gk~idgs~ 202 (358)
T PRK03011 151 SIFHALNQKAVARRVAKELGKKYEELNLIVAHLGGGI-SVGAHRKGRVIDVNN 202 (358)
T ss_pred ecchHHhHHHHHHHHHHHhCCCcccCcEEEEEeCCCc-eeeEEECCEEEecCC
No 203
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=22.27 E-value=8.1e+02 Score=24.63 Aligned_cols=129 Identities=14% Similarity=0.125 Sum_probs=69.7
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHH-HHHHHHHHHHHHHHHHHHcCCCcccEEEEE
Q 008237 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQ-SQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (573)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e-~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (573)
+..||||.+.+++.+++.+ |. ++.+.+.++.- . -+++ -++.+.+.++++..- + .-..||
T Consensus 3 ~lgvdig~~~i~~~l~dl~--g~--i~~~~~~~~~~-------~-~~~~~~~~~i~~~i~~~~~~-----~---~~igi~ 62 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGED--GQ--IRQRRQIPTPA-------S-QTPEALRQALSALVSPLQAQ-----A---DRVAVA 62 (291)
T ss_pred EEEEEECCCEEEEEEEcCC--Cc--EEEEEEecCCC-------C-CCHHHHHHHHHHHHHHhhhc-----C---cEEEEe
Confidence 6789999999999999864 43 34333333210 0 1233 445555556655421 1 123444
Q ss_pred ehhhh--------hcC-----ChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe
Q 008237 94 TAAVR--------AAE-----NKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (573)
Q Consensus 94 TsA~R--------~A~-----N~~~fl~~i~~~tG~~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~ 160 (573)
+...= ... +.-.+.+.+++++|++|-+-+.-.=+-+.-.- .. ....++.+++-+|.| +.-.++
T Consensus 63 ~pG~vd~~~~~~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~a~a~aE~~--~g-~~~~~~~~~l~ig~G-iG~giv 138 (291)
T PRK05082 63 STGIINDGILTALNPHNLGGLLHFPLVQTLEQLTDLPTIALNDAQAAAWAEYQ--AL-PDDIRNMVFITVSTG-VGGGIV 138 (291)
T ss_pred CcccccCCeeEEecCCCCccccCCChHHHHHHHhCCCEEEECcHHHHHHHHHH--hc-CCCCCCEEEEEECCC-cceEEE
Confidence 43221 111 23357777888999999988865554433211 11 112245788888844 222344
Q ss_pred eCCeEEE
Q 008237 161 KRGKVVF 167 (573)
Q Consensus 161 ~~~~~~~ 167 (573)
-+|++..
T Consensus 139 ~~G~~~~ 145 (291)
T PRK05082 139 LNGKLLT 145 (291)
T ss_pred ECCEEee
Confidence 5666654
No 204
>PF10298 WhiA_N: WhiA N-terminal LAGLIDADG-like domain; InterPro: IPR018478 This entry represents the N-terminal domain of sporulation factor WhiA []. This domain is related to the LAGLIDADG homing endonuclease domain while the C-terminal domain of WhiA is predicted to be a DNA binding helix-turn-helix domain [].; PDB: 3HYI_A 3HYJ_D.
Probab=22.01 E-value=3.4e+02 Score=22.20 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcceEEEEeCceeEEEEeeCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCceEEE
Q 008237 471 KFRVLCAIVRLSVILQQNDCVNLRGVDFFHSYEGFKLVIKEARDQPYLPGSSQPTLDNIEAELEKELEHFKKIFKQELLV 550 (573)
Q Consensus 471 ~~~~L~~iLRlA~~Ld~s~~~~i~~i~~~~~~~~~~L~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~f~~~fg~~l~i 550 (573)
+..-|++++|++-.|..+ . +.+.|.+..+ + ..-+++-..++++.|+.+..+
T Consensus 4 ~~AELaAlir~~G~l~~~-~------------~~~~l~~~te----------n------~~vARri~~llk~~f~i~~ei 54 (86)
T PF10298_consen 4 RIAELAALIRFSGSLSIS-N------------GRISLEISTE----------N------AAVARRIYSLLKKLFDIDPEI 54 (86)
T ss_dssp HHHHHHHHHHHHEEECTT-T------------TEEEE--EES-----------------HHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHHhCCEEEEE-C------------CEEEEEEEeC----------C------HHHHHHHHHHHHHHhCCCeEE
Confidence 345699999999887755 2 2344555443 1 357788889999999999999
Q ss_pred EeecCCCccc
Q 008237 551 VGSSSSSNDR 560 (573)
Q Consensus 551 ~~~~~~~~~~ 560 (573)
...+......
T Consensus 55 ~v~~~~~l~k 64 (86)
T PF10298_consen 55 SVRRSRNLKK 64 (86)
T ss_dssp EEEE-SSSBE
T ss_pred EEecCCCCCC
Confidence 9887665443
No 205
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=21.35 E-value=1.3e+02 Score=31.57 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCCcccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeC---hHHHHHHHHh-hhhccCCCCCCceEE
Q 008237 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLT---GEQEAKFVYM-GVLQFLPVFDRLVLS 147 (573)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tG~~i~VIs---g~eEA~l~~~-gv~~~~~~~~~~~lv 147 (573)
+++..+.++.++.. ++.+|....+.++- .+.+.+.++ ..|+++.+.+ ++.+.-+.-. .+...... +.-.|
T Consensus 11 l~~l~~~~~~~~~~--~~livtd~~~~~~~-~~~v~~~l~-~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~--~~d~I 84 (348)
T cd08175 11 LERLPEILKEFGYK--KALIVADENTYAAA-GKKVEALLK-RAGVVVLLIVLPAGDLIADEKAVGRVLKELER--DTDLI 84 (348)
T ss_pred HHHHHHHHHhcCCC--cEEEEECCcHHHHH-HHHHHHHHH-HCCCeeEEeecCCCcccCCHHHHHHHHHHhhc--cCCEE
Confidence 33444455566663 56666655565544 555555554 4688776543 3212222211 11111111 22389
Q ss_pred EEeCCCce
Q 008237 148 VDIGGGST 155 (573)
Q Consensus 148 iDIGGGSt 155 (573)
+=|||||+
T Consensus 85 IaIGGGs~ 92 (348)
T cd08175 85 IAVGSGTI 92 (348)
T ss_pred EEECCcHH
Confidence 99999995
No 206
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=21.28 E-value=1.9e+02 Score=25.87 Aligned_cols=83 Identities=17% Similarity=0.206 Sum_probs=51.7
Q ss_pred EEEecccceEEEEEEEeCCCCE-EEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEE--
Q 008237 17 SIDMGTSSFKLLIIRAYPNGKF-LTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA-- 93 (573)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~-~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA-- 93 (573)
+||.|+..+=+.+.+. .+.+ .++...... . ....+..+.+++++|+++ -.+||
T Consensus 2 aiD~G~kriGvA~~d~--~~~~a~pl~~i~~~-----~--------------~~~~~~~l~~~i~~~~~~---~iVvGlP 57 (130)
T TIGR00250 2 GLDFGTKSIGVAGQDI--TGWTAQGIPTIKAQ-----D--------------GEPDWSRIEELLKEWTPD---KIVVGLP 57 (130)
T ss_pred eEccCCCeEEEEEECC--CCCEEeceEEEEec-----C--------------CcHHHHHHHHHHHHcCCC---EEEEecc
Confidence 6899998887776643 2322 222211110 0 013456777788999985 35677
Q ss_pred ----ehhhhhcCChHHHHHHHHHHcCCcEEEeCh
Q 008237 94 ----TAAVRAAENKDEFVECVREKVGFEVDVLTG 123 (573)
Q Consensus 94 ----TsA~R~A~N~~~fl~~i~~~tG~~i~VIsg 123 (573)
-+.=..|.-...|.++++.++|++|..++.
T Consensus 58 ~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DE 91 (130)
T TIGR00250 58 LNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDE 91 (130)
T ss_pred CCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 222233444568999999999999998874
No 207
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=21.24 E-value=1e+02 Score=31.76 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhhcccccCCCCchh
Q 008237 398 DLEYLEAACLLHNIGHFTSKKGYHK 422 (573)
Q Consensus 398 ~r~lL~~Aa~LhdiG~~i~~~~~~k 422 (573)
.+.++.++++|||+|.-.-+..--.
T Consensus 164 n~dli~Ag~ilHdigK~~el~~~~~ 188 (287)
T COG3481 164 NRELIYAGAILHDIGKVLELTGPEA 188 (287)
T ss_pred cHHHHHHHHHHhcccccccCCCccc
Confidence 3689999999999999887766544
No 208
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=21.21 E-value=1.6e+02 Score=29.04 Aligned_cols=30 Identities=33% Similarity=0.375 Sum_probs=24.7
Q ss_pred eEEEEeCCCceEEEEee-CCeEEEEEEEehh
Q 008237 145 VLSVDIGGGSTEFVIGK-RGKVVFCESVNLG 174 (573)
Q Consensus 145 ~lviDIGGGStEl~~~~-~~~~~~~~SlplG 174 (573)
.+.+|||..|+-.++++ +++++...+.++-
T Consensus 2 ~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~ 32 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDGKIVASASRPYP 32 (245)
T ss_dssp EEEEEECSSEEEEEEEETTSCEEEEEEEEET
T ss_pred EEEEEEcccceEEEEEeCCCCEEEEEEEeee
Confidence 47899999999999987 6778877777653
No 209
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.03 E-value=1.1e+02 Score=35.53 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=25.0
Q ss_pred ceEEEEeCCCceEEEEeeCCeEEEEEEEehh
Q 008237 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLG 174 (573)
Q Consensus 144 ~~lviDIGGGStEl~~~~~~~~~~~~SlplG 174 (573)
+.+++|+||=||-+..+.+|.+..+..--++
T Consensus 279 ~~i~~DmGGTStDva~i~~G~pe~~~e~~v~ 309 (674)
T COG0145 279 NAIVFDMGGTSTDVALIIDGEPEISSETEVA 309 (674)
T ss_pred CEEEEEcCCcceeeeeeecCcEEeeccceEE
Confidence 4899999999999999999887655444443
No 210
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=20.82 E-value=2.3e+02 Score=30.02 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=34.9
Q ss_pred cchHHHHHHHHHHhhcccccCCCC-chhhhHHHHHcCCCCCCCCHHHHHHHH--HHHHHhcCCC
Q 008237 396 DKDLEYLEAACLLHNIGHFTSKKG-YHKQSCHIIMNGDHLYGYSTDEIKLIA--LLTRFHRKKF 456 (573)
Q Consensus 396 ~~~r~lL~~Aa~LhdiG~~i~~~~-~~khs~yiI~ns~~l~G~s~~E~~~iA--~ia~~hrk~~ 456 (573)
.+.|.-+.+|++|.-+ .++... ..-|+..--+.. .+++.|-+..-+. .+.+|+....
T Consensus 230 ~~ar~~l~~as~laG~--a~~~~~~g~~H~l~h~l~~--~~~i~HG~~~a~~lp~v~~~~~~~~ 289 (367)
T cd08182 230 LEARAKMAEASLLAGL--AISNTRTTAAHAISYPLTS--RYGVPHGLACALTLPALLRINLEAL 289 (367)
T ss_pred HHHHHHHHHHHHHHHH--HHhchhHHHHHHHhchhhc--CCCCChHHHHHHHHHHHHHHhhhhC
Confidence 3557778888888744 444333 334554322333 5788999986554 4778776543
Done!