Query 008240
Match_columns 573
No_of_seqs 242 out of 1172
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 21:30:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008240.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008240hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2mysa2 c.37.1.9 (A:4-33,A:80- 97.6 2.1E-05 1.5E-09 87.7 5.1 57 97-153 717-780 (794)
2 d1kk8a2 c.37.1.9 (A:1-28,A:77- 97.4 6.8E-05 5E-09 83.4 7.1 56 98-153 714-776 (789)
3 d2mysa2 c.37.1.9 (A:4-33,A:80- 96.4 0.0023 1.7E-07 70.9 7.8 48 133-180 734-781 (794)
4 d1kk8a2 c.37.1.9 (A:1-28,A:77- 95.8 0.0062 4.5E-07 67.3 7.8 48 133-180 730-777 (789)
5 d1w7ja2 c.37.1.9 (A:63-792) My 89.9 0.089 6.5E-06 57.1 4.1 34 99-132 690-726 (730)
6 d1w7ja2 c.37.1.9 (A:63-792) My 58.9 3.8 0.00027 43.9 4.9 18 162-179 708-725 (730)
7 d2gnoa1 a.80.1.1 (A:209-306) g 6.6 2.9E+02 0.021 21.0 4.6 63 122-188 3-66 (98)
8 d1hnra_ a.155.1.1 (A:) H1 prot 3.4 1.9E+02 0.014 19.9 1.3 15 2-17 23-39 (47)
9 d1x61a2 g.39.1.3 (A:35-66) Thy 2.2 1.8E+02 0.013 18.5 -0.1 7 496-502 6-12 (32)
10 d1jjcb6 b.153.1.1 (B:191-399) 1.9 3.9E+02 0.028 23.4 1.8 16 2-18 34-51 (209)
No 1
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=97.56 E-value=2.1e-05 Score=87.67 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=45.1
Q ss_pred cchhhcccchHHhhH---HHHHHHHHHHHHhHHHHHhhh----hhhHHHHHHHHHhHHHHHHHH
Q 008240 97 TTNLSSQEVPDRIRH---EEAATKAQAAFRGYLARRAFR----TLKGIIRLQAVIRGHLVRRQA 153 (573)
Q Consensus 97 ~~~~~ar~~~e~lre---e~AAI~IQaafRGylaRr~y~----~lkaiIrLQAlvRG~lvRRq~ 153 (573)
..-......+|..|. ..+|+.||++||||++|+.|+ .+.+++.||+.+||+++||.+
T Consensus 717 Flr~~~~~~LE~~r~~~l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~ 780 (794)
T d2mysa2 717 FFKAGLLGLLEEMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHW 780 (794)
T ss_dssp EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333445556666654 478999999999999999997 256899999999999998876
No 2
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=97.43 E-value=6.8e-05 Score=83.36 Aligned_cols=56 Identities=29% Similarity=0.377 Sum_probs=43.4
Q ss_pred chhhcccchHHhhH---HHHHHHHHHHHHhHHHHHhhh-hhh---HHHHHHHHHhHHHHHHHH
Q 008240 98 TNLSSQEVPDRIRH---EEAATKAQAAFRGYLARRAFR-TLK---GIIRLQAVIRGHLVRRQA 153 (573)
Q Consensus 98 ~~~~ar~~~e~lre---e~AAI~IQaafRGylaRr~y~-~lk---aiIrLQAlvRG~lvRRq~ 153 (573)
.-..+...+|.+|. ..+|++||++||||++|+.|+ ++. +++.||+.+||+++||.+
T Consensus 714 lr~~~~~~LE~~r~~~l~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~ 776 (789)
T d1kk8a2 714 FKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 776 (789)
T ss_dssp ECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 33444455666553 578999999999999999998 332 688899999999999866
No 3
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=96.38 E-value=0.0023 Score=70.89 Aligned_cols=48 Identities=21% Similarity=-0.035 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhh
Q 008240 133 TLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRYSDI 180 (573)
Q Consensus 133 ~lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR~~~e 180 (573)
..+.++.||++|||+++|++|...+....|++.||+.+|+++.|+.+.
T Consensus 734 l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~~ 781 (794)
T d2mysa2 734 LAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWP 781 (794)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 456788999999999999999655666789999999999999988763
No 4
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=95.83 E-value=0.0062 Score=67.26 Aligned_cols=48 Identities=27% Similarity=0.115 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhh
Q 008240 133 TLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRYSDI 180 (573)
Q Consensus 133 ~lkaiIrLQAlvRG~lvRRq~~~tlr~~qAaVrIQa~iRgrrvR~~~e 180 (573)
..+.++.||++|||+++|++|........+++.||+.+|++++|+.+.
T Consensus 730 l~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~~ 777 (789)
T d1kk8a2 730 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 777 (789)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 456788999999999999999543344568999999999999998763
No 5
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=89.86 E-value=0.089 Score=57.14 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=24.9
Q ss_pred hhhcccchHHhhH---HHHHHHHHHHHHhHHHHHhhh
Q 008240 99 NLSSQEVPDRIRH---EEAATKAQAAFRGYLARRAFR 132 (573)
Q Consensus 99 ~~~ar~~~e~lre---e~AAI~IQaafRGylaRr~y~ 132 (573)
-..+...+|..|. ..+|++||++||||++|+.|+
T Consensus 690 r~~~~~~LE~~r~~~l~~~~~~iQ~~~R~~l~Rk~~~ 726 (730)
T d1w7ja2 690 RAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYM 726 (730)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666553 468999999999999999887
No 6
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=58.90 E-value=3.8 Score=43.87 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=8.6
Q ss_pred hHHHHHHHHhhhhhhhhh
Q 008240 162 GIVKFQALARGRRVRYSD 179 (573)
Q Consensus 162 AaVrIQa~iRgrrvR~~~ 179 (573)
++++||+.+|+|++|+.|
T Consensus 708 ~~~~iQ~~~R~~l~Rk~~ 725 (730)
T d1w7ja2 708 ACIRIQKTIRGWLMRKKY 725 (730)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555554444444
No 7
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=6.57 E-value=2.9e+02 Score=21.05 Aligned_cols=63 Identities=19% Similarity=0.098 Sum_probs=36.0
Q ss_pred HHhHHHHHhhhhhhHHHHHHHHHhHHH-HHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhHHhh
Q 008240 122 FRGYLARRAFRTLKGIIRLQAVIRGHL-VRRQAVITLRCLLGIVKFQALARGRRVRYSDIGIQVQKIC 188 (573)
Q Consensus 122 fRGylaRr~y~~lkaiIrLQAlvRG~l-vRRq~~~tlr~~qAaVrIQa~iRgrrvR~~~eg~~~q~~~ 188 (573)
.-||++.|.++.+-+-+ --+|+. .-.|...+..-..|+..||..+|--+.-..++|..-|+..
T Consensus 3 legylacreller~sk~----e~k~ff~lfdqv~ntitg~daflliq~~~riilhen~we~~~~q~~v 66 (98)
T d2gnoa1 3 LEGYLACRELLERFSKV----ESKEFFALFDQVTNTITGKDAFLLIQRLTRIILHENTWESVEDQKSV 66 (98)
T ss_dssp HHHHHHHHHHHHHHHHS----CGGGHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHTSCCCSHHHHHHH
T ss_pred chhHHHHHHHHHHHhhc----CcchHHHHHHHHHhhcccchHHHHHHHHHHHhcccCcccchhhccch
Confidence 35788877766211100 011221 1133334555668899999999887766667776666544
No 8
>d1hnra_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=3.45 E-value=1.9e+02 Score=19.92 Aligned_cols=15 Identities=47% Similarity=0.747 Sum_probs=11.5
Q ss_pred CCCchhhHHHhh--cccc
Q 008240 2 GKTPGKWIKSLL--LGKK 17 (573)
Q Consensus 2 gkspgkwik~~l--~gkk 17 (573)
|+-| +||+-.| -||+
T Consensus 23 GR~P-~w~~~~l~~~Gks 39 (47)
T d1hnra_ 23 GRTP-AVIKKAMDEQGKS 39 (47)
T ss_dssp SSCC-SHHHHHHHHTCCS
T ss_pred CcCC-HHHHHHHHHcCCC
Confidence 6677 8999998 3654
No 9
>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.22 E-value=1.8e+02 Score=18.52 Aligned_cols=7 Identities=71% Similarity=1.170 Sum_probs=5.1
Q ss_pred HhhhccC
Q 008240 496 KAKLRGQ 502 (573)
Q Consensus 496 kAk~r~q 502 (573)
.||||||
T Consensus 6 ~~kLRGq 12 (32)
T d1x61a2 6 RAQLRGQ 12 (32)
T ss_dssp CCBCTTS
T ss_pred CceecCC
Confidence 4678887
No 10
>d1jjcb6 b.153.1.1 (B:191-399) B3/B4 domain of PheRS, PheT {Thermus thermophilus [TaxId: 274]}
Probab=1.94 E-value=3.9e+02 Score=23.44 Aligned_cols=16 Identities=25% Similarity=0.725 Sum_probs=11.2
Q ss_pred CCCchhhHHHhh--ccccC
Q 008240 2 GKTPGKWIKSLL--LGKKS 18 (573)
Q Consensus 2 gkspgkwik~~l--~gkks 18 (573)
+.|| .|||..| .|-++
T Consensus 34 ~~SP-~wlk~rL~~~Gir~ 51 (209)
T d1jjcb6 34 APSP-LWMQRALFAAGMRP 51 (209)
T ss_dssp CCCC-HHHHHHHHHTTCCC
T ss_pred CCCH-HHHHHHHHHcCCCc
Confidence 4588 7999988 45444
Done!